RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13753
(229 letters)
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich
domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 76.1 bits (187), Expect = 1e-18
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 2 DTSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKC 54
D H+F+++ +KK CD+C++++ + + GL+C+ CKTN+H CQ V +
Sbjct: 15 DKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYVEMQR 67
Score = 43.8 bits (103), Expect = 2e-06
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKC 174
+ + GL+C+ CKTN+H CQ V +
Sbjct: 40 LNNKFGLRCKNCKTNIHEHCQSYVEMQR 67
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus
musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Length = 50
Score = 74.4 bits (183), Expect = 4e-18
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 5 HQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKC 54
H+F+ Y Y T CD C +L G +QGLKC C NVH C+EKV C
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 50
Score = 46.3 bits (110), Expect = 1e-07
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKC 174
G +QGLKC C NVH C+EKV C
Sbjct: 23 GLVKQGLKCEDCGMNVHHKCREKVANLC 50
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain,
zinc-binding domain, endocytosis/exocytosis,signaling
protein complex; NMR {Rattus norvegicus}
Length = 66
Score = 74.5 bits (183), Expect = 4e-18
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 5 HQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQP 56
H F+ +T T C C +L G RQG++C C H CQ+ + A C+
Sbjct: 14 HNFEVWTATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLLNADCKL 65
Score = 46.7 bits (111), Expect = 9e-08
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKCQP 176
G RQG++C C H CQ+ + A C+
Sbjct: 36 GIARQGMRCTECGVKCHEKCQDLLNADCKL 65
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 85
Score = 73.4 bits (180), Expect = 2e-17
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 5 HQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLRRQ 64
H+F+ +TY T CD C +L G QG+KC C NVH C VP+ C +R
Sbjct: 18 HKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLC-GMDHTEKRG 76
Query: 65 KSTSEIET 72
+ + E
Sbjct: 77 RIYLKAEV 84
Score = 46.0 bits (109), Expect = 2e-07
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLRRQKSTSEIET 192
G QG+KC C NVH C VP+ C +R + + E
Sbjct: 40 GLIHQGMKCDTCDMNVHKQCVINVPSLC-GMDHTEKRGRIYLKAEV 84
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding,
DAG/PE-binding protein, diacylglycerol, phorbol ester,
TCR, T-cell, structural genomics; NMR {Homo sapiens}
Length = 65
Score = 72.5 bits (178), Expect = 2e-17
Identities = 26/54 (48%), Positives = 31/54 (57%)
Query: 1 MDTSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKC 54
+D H+F+ Y YK T C+ C +L G RQGLKC C NVH CQ KV C
Sbjct: 9 IDMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLC 62
Score = 46.3 bits (110), Expect = 1e-07
Identities = 16/28 (57%), Positives = 16/28 (57%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKC 174
G RQGLKC C NVH CQ KV C
Sbjct: 35 GLARQGLKCDACGMNVHHRCQTKVANLC 62
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 74.7 bits (183), Expect = 1e-15
Identities = 39/204 (19%), Positives = 58/204 (28%), Gaps = 55/204 (26%)
Query: 4 SHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLRR 63
+H+F +K+ T C C+ + G +QG +C++C VH C E V C
Sbjct: 37 NHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSC--------- 87
Query: 64 QKSTSEIETRVTPAVPDEEGRLTLFITGIKVRLPYVVTFTRVPGSVSPGPTMRAAGKLSS 123
+ P + K+ TF GS+ G
Sbjct: 88 -PGADKGPASDDPRSKHK----------FKIHTYSSPTFCDHCGSLLYG----------- 125
Query: 124 HELKTYSRQNSPRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLRR 183
QG+KC C NVH C VP+ C R
Sbjct: 126 ------------------------LIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRG 161
Query: 184 QKSTSEIETRVTPAAPDEEGRPLF 207
+ R + + L
Sbjct: 162 RIYIQAHIDREVLIVVVRDAKNLV 185
Score = 63.1 bits (153), Expect = 8e-12
Identities = 28/99 (28%), Positives = 41/99 (41%)
Query: 1 MDTSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRL 60
+ H+F+ +TY T CD C +L G QG+KC C NVH C VP+ C
Sbjct: 99 PRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTE 158
Query: 61 LRRQKSTSEIETRVTPAVPDEEGRLTLFITGIKVRLPYV 99
R + R V + + + + + PYV
Sbjct: 159 RRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYV 197
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 67.9 bits (166), Expect = 2e-15
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 5 HQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLRRQ 64
H+F + + T C +C + G +QG KCR C +H C +K+ +C + R
Sbjct: 18 HEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKIIGRCTGTAANSRDT 77
Query: 65 KSTS 68
S
Sbjct: 78 SGPS 81
Score = 43.3 bits (102), Expect = 3e-06
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLRRQKSTS 188
G +QG KCR C +H C +K+ +C + R S
Sbjct: 40 GLNKQGYKCRQCNAAIHKKCIDKIIGRCTGTAANSRDTSGPS 81
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding,
DAG/PE-binding protein, diacylglycerol, phorbol ester,
TCR, T-cell, structural genomics; NMR {Homo sapiens}
Length = 77
Score = 67.1 bits (164), Expect = 4e-15
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 5 HQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKS 58
H+F + + T C +C + + G +QG +CR C +H C +KV AKC +
Sbjct: 24 HEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDKVIAKCTGSA 77
Score = 42.8 bits (101), Expect = 3e-06
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 146 GGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKS 178
G +QG +CR C +H C +KV AKC +
Sbjct: 45 WGLNKQGYQCRQCNAAIHKKCIDKVIAKCTGSA 77
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto-
oncogene, zinc, ATP-binding, phorbol-ester binding; NMR
{Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Length = 52
Score = 62.1 bits (151), Expect = 1e-13
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKC 54
T+H F T+ K+ CDIC + L G +C+ C H C KVP C
Sbjct: 2 TTHNFARKTFLKLAFCDICQKFLL----NGFRCQTCGYKFHEHCSTKVPTMC 49
Score = 41.3 bits (97), Expect = 7e-06
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 151 QGLKCRLCKTNVHVDCQEKVPAKC 174
G +C+ C H C KVP C
Sbjct: 26 NGFRCQTCGYKFHEHCSTKVPTMC 49
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 84
Score = 59.8 bits (144), Expect = 3e-12
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 5 HQFQEYTYKKITPCDICSQVLRGHTR--QGLKCRLCKTNVHVDCQEKVPAKCQP 56
H+F Y T C+ C + L + L+CR C H D +K P
Sbjct: 25 HEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMDKKEEIIAP 78
Score = 35.9 bits (82), Expect = 0.001
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 148 HTRQGLKCRLCKTNVHVDCQEKVPAKCQP 176
L+CR C H D +K P
Sbjct: 50 KPPPALECRRCHIKCHKDHMDKKEEIIAP 78
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 63.0 bits (153), Expect = 8e-12
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 4 SHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLRR 63
H F+ +T++ C+ C+ + G QG+KC C NVH C + VP C+P + +++
Sbjct: 209 IHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKK 268
Score = 43.7 bits (103), Expect = 2e-05
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLRR 183
G QG+KC C NVH C + VP C+P + +++
Sbjct: 232 GLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKK 268
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction,
apoptosis, cysteine rich domain; NMR {Mus musculus}
Length = 72
Score = 56.5 bits (136), Expect = 3e-11
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 5 HQFQEYTYKKI-TPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQ 55
H+F E + CD+C + + RQ L+C CK H +C+ + C+
Sbjct: 24 HRFVELALRGGPGWCDLCGREVL---RQALRCANCKFTCHSECRSLIQLDCR 72
Score = 41.5 bits (97), Expect = 1e-05
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 150 RQGLKCRLCKTNVHVDCQEKVPAKCQ 175
RQ L+C CK H +C+ + C+
Sbjct: 47 RQALRCANCKFTCHSECRSLIQLDCR 72
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal
transduction, apoptosis, cysteine rich domain, metal
binding protein; NMR {Mus musculus}
Length = 59
Score = 55.6 bits (134), Expect = 4e-11
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 5 HQFQEYTYKKI-TPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQ 55
H+F E + CD+C + + RQ L+C CK H +C+ + C+
Sbjct: 11 HRFVELALRGGPGWCDLCGREVL---RQALRCANCKFTCHSECRSLIQLDCR 59
Score = 40.6 bits (95), Expect = 1e-05
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 150 RQGLKCRLCKTNVHVDCQEKVPAKCQ 175
RQ L+C CK H +C+ + C+
Sbjct: 34 RQALRCANCKFTCHSECRSLIQLDCR 59
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 51.4 bits (123), Expect = 5e-08
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 2 DTSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVP 51
H FQ +++++ T C C +LRG QG +C C+ H +C +VP
Sbjct: 344 ANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP 393
Score = 29.4 bits (66), Expect = 0.84
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVP 171
G QG +C C+ H +C +VP
Sbjct: 369 GTFYQGYRCYRCRAPAHKECLGRVP 393
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 50.8 bits (121), Expect = 1e-07
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVP 51
H FQ +++++ T C C +LRG QG +C C+ + H +C +VP
Sbjct: 517 NGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRVP 565
Score = 30.0 bits (67), Expect = 0.74
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVP 171
G QG +C C+ + H +C +VP
Sbjct: 541 GTFYQGYRCHRCRASAHKECLGRVP 565
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 1e-07
Identities = 49/307 (15%), Positives = 92/307 (29%), Gaps = 127/307 (41%)
Query: 7 FQE----Y-TYKK-ITP-CDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSR 59
F+E Y TY + ++ L R +D ++
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRT-----------TLDAEKVFTQGLNILE- 217
Query: 60 LLRRQKSTSEIETRVTPAVPDEEGRLTLFITGIKVRLP---------YVVTFTRV----P 106
L +T PD++ ++ I + P YVVT ++ P
Sbjct: 218 WLENPSNT-----------PDKD-----YLLSIPISCPLIGVIQLAHYVVT-AKLLGFTP 260
Query: 107 GSVSP---GPTMRAAGKLS------------------------------SHELKTYSRQN 133
G + G T + G ++ +E Y +
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE--AYPNTS 318
Query: 134 -SPRLVVTSP----GGPG------GHTRQGLKCRLCKTNVHVDCQEKV------------ 170
P ++ S G P T++ ++ + KTN H+ ++V
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 171 ---PAKCQPKS-----RLLRRQKSTSEIE-TRVTPAAPDEEGRPLFITGIIKVRLPYVVT 221
P P+S LR+ K+ S ++ +R+ P E + F + V P+
Sbjct: 379 VSGP----PQSLYGLNLTLRKAKAPSGLDQSRI----PFSERKLKFSNRFLPVASPF--- 427
Query: 222 FTRLMTS 228
+ L+
Sbjct: 428 HSHLLVP 434
Score = 42.7 bits (100), Expect = 6e-05
Identities = 32/170 (18%), Positives = 63/170 (37%), Gaps = 54/170 (31%)
Query: 24 VLRGHTRQGLKCRLCKTNVHVDCQEKV---------------PAKCQPKS-----RLLRR 63
+ T++ ++ + KTN H+ ++V P P+S LR+
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP----PQSLYGLNLTLRK 395
Query: 64 QKSTSEIE-TRVTPAVPDEEGRLTLFITGIKVRLPYVVTFTRVPGSVSP--GPTMRAAGK 120
K+ S ++ +R +P E R K++ + F +P + P + A
Sbjct: 396 AKAPSGLDQSR----IPFSE-R--------KLK--FSNRF--LPVAS-PFHSHLLVPASD 437
Query: 121 LSSHELKTYSRQ-NSPRLVVTSPGGPGGHTRQGLKCRLCKTNV---HVDC 166
L + +L + N+ + + P T G R+ ++ VDC
Sbjct: 438 LINKDLVKNNVSFNAKDIQI-----PVYDTFDGSDLRVLSGSISERIVDC 482
Score = 28.9 bits (64), Expect = 1.6
Identities = 25/133 (18%), Positives = 39/133 (29%), Gaps = 34/133 (25%)
Query: 107 GSVSPGPTM--------RAAGKL----SSHELKTYS-------RQNSPRLVVTSPGGPGG 147
GS G M +AA + +H TY N L + GG G
Sbjct: 1625 GSQEQG--MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI-HFGGEKG 1681
Query: 148 HT-RQGLKCRLCKTNVHVDCQ-EKVPAKCQPKSRLLRRQKSTSEI-ETRVT-PAAPDEEG 203
R+ + +T V + EK+ + S + + T+ T PA
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA------ 1735
Query: 204 RPLFITGIIKVRL 216
L +
Sbjct: 1736 --LTLMEKAAFED 1746
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc
binding domain, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
SCOP: g.49.1.1
Length = 84
Score = 41.1 bits (96), Expect = 2e-05
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 5 HQFQEYTYKKITPCDICSQVLR-GHTRQGLKCRLCKTNVHVDCQEKVPAKC 54
HQ+ E C +C + Q +C CK VH C+E + KC
Sbjct: 28 HQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTKC 78
Score = 34.6 bits (79), Expect = 0.004
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 151 QGLKCRLCKTNVHVDCQEKVPAKC 174
Q +C CK VH C+E + KC
Sbjct: 55 QDWRCLWCKAMVHTSCKESLLTKC 78
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc-
binding protein, signaling protein; NMR {Mus musculus}
SCOP: g.49.1.1 PDB: 1kbf_A
Length = 49
Score = 35.3 bits (81), Expect = 0.001
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 4 SHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPA 52
+H+F C++C + + G+KC+ C+ H C ++ PA
Sbjct: 4 THRFST-KSWLSQVCNVCQKSMI----FGVKCKHCRLKCHNKCTKEAPA 47
Score = 28.8 bits (64), Expect = 0.20
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 151 QGLKCRLCKTNVHVDCQEKVPA 172
G+KC+ C+ H C ++ PA
Sbjct: 26 FGVKCKHCRLKCHNKCTKEAPA 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.011
Identities = 41/260 (15%), Positives = 72/260 (27%), Gaps = 58/260 (22%)
Query: 1 MDTSHQFQEYTYKKITPC-------DI-CSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPA 52
MD +Y YK I + C V + L H+
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEEID---HI---IMSK- 58
Query: 53 KCQPKSRLLR-----RQKSTSEIETRVTPAVPDEEGRLTLFITGIKV--RLP------YV 99
S LR K ++ V + L ++ IK R P Y+
Sbjct: 59 --DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL---MSPIKTEQRQPSMMTRMYI 113
Query: 100 VTFTRVPGSVSPGPTMRAAGKLSSHELKT--YSRQNSPRLVVTSPGGPGGHTRQGLKCRL 157
R+ + +L+ + + +++ G G + + +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG---KTWVALDV 170
Query: 158 CKTNVHVDCQEKVP--------AKCQ-PKSRLLRRQKSTSEIETRVTPAAPDEEGRPLFI 208
C + Q K+ C P++ L QK +I+ T + D
Sbjct: 171 CLSY---KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT-SRSDHSSNIKLR 226
Query: 209 TGIIKVRLPYVVTFTRLMTS 228
I+ L RL+ S
Sbjct: 227 IHSIQAEL------RRLLKS 240
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.022
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 120 KLSSHELKTYSRQNSPRLVVTS 141
KL + LK Y+ ++P L + +
Sbjct: 24 KLQA-SLKLYADDSAPALAIKA 44
Score = 32.2 bits (72), Expect = 0.071
Identities = 5/31 (16%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 184 QKSTSEIETRVTPAAPDEEGRP-LFITGIIK 213
+++ +++ + A D P L I ++
Sbjct: 19 KQALKKLQASLKLYADDSA--PALAIKATME 47
Score = 26.1 bits (56), Expect = 7.3
Identities = 2/24 (8%), Positives = 10/24 (41%)
Query: 64 QKSTSEIETRVTPAVPDEEGRLTL 87
+++ +++ + D L +
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI 42
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 32.8 bits (74), Expect = 0.056
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 1 MDTSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEK 49
++ +E + C+IC +L QG C C +H+ C K
Sbjct: 166 LEMEQYIRETYPDAVKICNICHSLLI----QGQSCETCGIRMHLPCVAK 210
Score = 27.4 bits (60), Expect = 3.4
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 151 QGLKCRLCKTNVHVDCQEK 169
QG C C +H+ C K
Sbjct: 192 QGQSCETCGIRMHLPCVAK 210
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 31.1 bits (70), Expect = 0.32
Identities = 9/60 (15%), Positives = 14/60 (23%), Gaps = 1/60 (1%)
Query: 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLR 62
+ C C T + C C V +C K R+ +
Sbjct: 363 GERPPTLVPVTHVMMCMNCGC-DFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAK 421
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics
consortium, GTPase activation, phosphoprotein,
polymorphism hydrolase activator, SGC; 2.30A {Homo
sapiens}
Length = 271
Score = 30.5 bits (69), Expect = 0.34
Identities = 15/115 (13%), Positives = 29/115 (25%), Gaps = 26/115 (22%)
Query: 5 HQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPK---SRLL 61
FQ +++ + + G+K + + E + K
Sbjct: 14 LYFQGMWDQRLVRLALLQHLR---AFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFN 70
Query: 62 RRQKSTSEIETRVTPAVPD------EEGRLTLFITGIKVRLPYVVTFTRVPGSVS 110
S + P+ E+ + G+ F R GSV
Sbjct: 71 ALPHSAVPEYGHI-PSFLVDACTSLEDH---IHTEGL---------F-RKSGSVI 111
Score = 27.8 bits (62), Expect = 2.5
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 151 QGLKCRLCKTNVHVDCQEKVPAKCQPK 177
G+K + + E + K
Sbjct: 37 YGIKVKGVRGQCDRRRHETAATEIGGK 63
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 28.4 bits (63), Expect = 0.49
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 15 ITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEK 49
+ C+IC +L QG C C +H+ C K
Sbjct: 15 VKICNICHSLLI----QGQSCETCGIRMHLPCVAK 45
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Length = 907
Score = 29.6 bits (67), Expect = 0.98
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 70 IETRVTPAVPDEEGRLTLF 88
IE V +E+G++ +
Sbjct: 369 IEPDVGYGYINEQGQVVIH 387
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 28.4 bits (62), Expect = 0.99
Identities = 10/45 (22%), Positives = 15/45 (33%)
Query: 18 CDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLR 62
C +C + L + C CK NV C + L +
Sbjct: 58 CILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCK 102
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A
{Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1
d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Length = 907
Score = 29.6 bits (67), Expect = 1.0
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 70 IETRVTPAVPDEEGRLTLF 88
IE V A ++G+ +
Sbjct: 368 IEPDVAFAYMGDDGKCYIH 386
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium
ligand, iron, iron-sulfur, metal-binding,
oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium
barkeri}
Length = 425
Score = 29.1 bits (66), Expect = 1.3
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 70 IETRVTPAVPDEEGRLTLF 88
IE + D EG LT+
Sbjct: 186 IEPDAGVSYYDNEGMLTVV 204
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 28.0 bits (61), Expect = 1.8
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 18 CDICSQVLRGHTRQG--LKCRLCKTNVHVDCQEKVPAKCQPKSRL 60
C +C + + ++C C VH C+ + S L
Sbjct: 5 CPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNL 49
>3pty_A Arabinosyltransferase C; beta-sandwich, carbohydrate binding,
carbohydrate; HET: AFO; 2.00A {Mycobacterium
tuberculosis}
Length = 406
Score = 28.0 bits (62), Expect = 2.6
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 66 STSEIETRVTPAVPDEEGRLTLFITGIKVRLPYVVTFTRVPGSVSPGPTMRAAGKLSS-- 123
+ + + I G + RLPY + R P S ++ L S
Sbjct: 91 LNDDGLITGSEPGTEGGTTAAPGINGSRARLPYNLDPARTPVLGSWRAGVQVPAMLRSGW 150
Query: 124 HELKTYSRQNSPRLVVTSPGGPGG 147
+ L T +++ L+V + G
Sbjct: 151 YRLPTNEQRDRAPLLVVTAAGRFD 174
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 25.0 bits (54), Expect = 8.7
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 16 TPCDICSQVLRGHTRQGLKCRLCKTNVHVDC 46
C IC ++ L C +C VH +C
Sbjct: 26 AVCSICMDGESQNSNVILFCDMCNLAVHQEC 56
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 26.0 bits (58), Expect = 9.4
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 84 RLTLFITGIK-VRLPYVVTFTRVPGS 108
RL FI G K + V F R+PG
Sbjct: 267 RLVRFIVGAKHIA--EVQPFPRIPGI 290
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.405
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,382,047
Number of extensions: 193366
Number of successful extensions: 431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 60
Length of query: 229
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,188,903
Effective search space: 582257517
Effective search space used: 582257517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)