RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13753
(229 letters)
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 67.7 bits (165), Expect = 6e-16
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 4 SHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLR 62
+H F+ +T++ C+ C+ + G QG++C C NVH C + VP CQP + ++
Sbjct: 4 THNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPNDCQPDLKRIK 62
Score = 43.1 bits (101), Expect = 7e-07
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLR 182
G QG++C C NVH C + VP CQP + ++
Sbjct: 27 GLIAQGVRCSDCGLNVHKQCSKHVPNDCQPDLKRIK 62
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 63.5 bits (154), Expect = 2e-14
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 5 HQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKC 54
H+F+ Y Y T CD C +L G +QGLKC C NVH C+EKV C
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 50
Score = 38.9 bits (90), Expect = 2e-05
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKC 174
G +QGLKC C NVH C+EKV C
Sbjct: 23 GLVKQGLKCEDCGMNVHHKCREKVANLC 50
>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus)
[TaxId: 10117]}
Length = 66
Score = 60.4 bits (146), Expect = 3e-13
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 5 HQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSR 59
H+F+ ++Y T CD C +L G QG+KC C+ NVH C VP+ C
Sbjct: 9 HKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSVPSLCGVDHT 63
Score = 37.7 bits (87), Expect = 7e-05
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSR 179
G QG+KC C+ NVH C VP+ C
Sbjct: 31 GLVHQGMKCSCCEMNVHRRCVRSVPSLCGVDHT 63
>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 57.3 bits (138), Expect = 3e-12
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKC 54
T+H F T+ K+ CDIC + L G +C+ C H C KVP C
Sbjct: 2 TTHNFARKTFLKLAFCDICQKFLL----NGFRCQTCGYKFHEHCSTKVPTMC 49
Score = 38.0 bits (88), Expect = 4e-05
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 146 GGHTRQGLKCRLCKTNVHVDCQEKVPAKC 174
G +C+ C H C KVP C
Sbjct: 21 QKFLLNGFRCQTCGYKFHEHCSTKVPTMC 49
>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 84
Score = 55.5 bits (133), Expect = 4e-11
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 5 HQFQEYTYKKITPCDICSQVLRGHTR-QGLKCRLCKTNVHVDCQEKVPAKC 54
HQ+ E C +C + R Q +C CK VH C+E + KC
Sbjct: 28 HQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTKC 78
Score = 35.4 bits (81), Expect = 6e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 146 GGHTRQGLKCRLCKTNVHVDCQEKVPAKC 174
Q +C CK VH C+E + KC
Sbjct: 50 SVLRLQDWRCLWCKAMVHTSCKESLLTKC 78
>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 49
Score = 48.7 bits (116), Expect = 5e-09
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 4 SHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPA 52
+H+F ++ C++C + + G+KC+ C+ H C ++ PA
Sbjct: 4 THRFSTKSWLSQV-CNVCQKSMI----FGVKCKHCRLKCHNKCTKEAPA 47
Score = 34.4 bits (79), Expect = 6e-04
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 150 RQGLKCRLCKTNVHVDCQEKVPA 172
G+KC+ C+ H C ++ PA
Sbjct: 25 IFGVKCKHCRLKCHNKCTKEAPA 47
>d1vlba4 d.133.1.1 (A:311-907) Aldehyde oxidoreductase
{Desulfovibrio gigas [TaxId: 879]}
Length = 597
Score = 27.7 bits (60), Expect = 1.2
Identities = 15/133 (11%), Positives = 31/133 (23%), Gaps = 28/133 (21%)
Query: 70 IETRVTPAVPDEEGRLTLF---------------ITGI---KVRLPYVVTFTRVPGS--- 108
IE V A ++G+ + G+ ++ + + G+
Sbjct: 58 IEPDVAFAYMGDDGKCYIHSKSIGVHLHLYMIAPGVGLEPDQLV----LVANPMGGTFGY 113
Query: 109 -VSPGPTMRAAGKLSSHELKTYSRQNSPRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQ 167
SP A +++ G +K K + +
Sbjct: 114 KFSPTSEALVA--VAAMATGRPVHLRYNYQQQQQYTGKRSPWEMNVKFAAKKDGTLLAME 171
Query: 168 EKVPAKCQPKSRL 180
P S
Sbjct: 172 SDWLVDHGPYSEF 184
>d1dgja4 d.133.1.1 (A:311-906) Aldehyde oxidoreductase
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 596
Score = 27.7 bits (60), Expect = 1.2
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 70 IETRVTPAVPDEEGRLTLF 88
IE V +E+G++ +
Sbjct: 59 IEPDVGYGYINEQGQVVIH 77
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 25.2 bits (54), Expect = 2.9
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 18 CDICSQVLRGHTRQGLKCRLCKTNVHVDCQ 47
C +C Q+ Q ++C+ C H DC
Sbjct: 19 CVVCRQMTVASGNQLVECQECHNLYHQDCH 48
>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii
yoelii [TaxId: 73239]}
Length = 219
Score = 25.5 bits (55), Expect = 4.6
Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 15/95 (15%)
Query: 132 QNSPRLVVTSPGGPGGHTRQGLKCRLCKTNVHVD-CQEKVPAKCQPKSRLLRRQKSTSEI 190
+ + V P G + + L R+ K+ P
Sbjct: 136 EKKIKATVLYPATTGRNAHEIL--RVLKSLQLTYTTPVATPVNWNEGD------------ 181
Query: 191 ETRVTPAAPDEEGRPLFITGIIKVRLPYVVTFTRL 225
+ V P D+E F I KV +P + R
Sbjct: 182 KCCVIPTLQDDEISKHFKNEITKVEMPSKKKYLRF 216
>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 220
Score = 25.5 bits (55), Expect = 5.9
Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 15/120 (12%)
Query: 107 GSVSPGPTMRAAGKLSSHELKTYSRQNSPRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDC 166
G + P +++ + + +L + P G + + L R+ +
Sbjct: 111 GMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEIL--RVVISLQLTAE 168
Query: 167 QEKV-PAKCQPKSRLLRRQKSTSEIETRVTPAAPDEEGRPLFITGIIKVRLPYVVTFTRL 225
+ P + V P P+EE + LF G+ LP + R
Sbjct: 169 KRVATPVDWKDGD------------SVMVLPTIPEEEAKKLFPKGVFTKELPSGKKYLRY 216
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.405
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 832,773
Number of extensions: 38567
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 24
Length of query: 229
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,281,736
Effective search space: 188415192
Effective search space used: 188415192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)