BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13759
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 129 bits (324), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 60/69 (86%), Positives = 67/69 (97%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 324 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 383
Query: 82 VNEVIGIQQ 90
VNEVIGI+Q
Sbjct: 384 VNEVIGIRQ 392
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 18 IKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS 77
I + + DPN + I LS + G+ T H+LP L D VR N+
Sbjct: 476 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAK 535
Query: 78 NLDCVNEVI 86
+L + ++
Sbjct: 536 SLQKIGPIL 544
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
++L +D V+ A AS + + +L N ++P+F + DE VRL + C
Sbjct: 164 RNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA--C 221
Query: 82 VN 83
VN
Sbjct: 222 VN 223
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 129 bits (324), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 60/69 (86%), Positives = 67/69 (97%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 322 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 381
Query: 82 VNEVIGIQQ 90
VNEVIGI+Q
Sbjct: 382 VNEVIGIRQ 390
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 18 IKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS 77
I + + DPN + I LS + G+ T H+LP L D VR N+
Sbjct: 474 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAK 533
Query: 78 NLDCVNEVI 86
+L + ++
Sbjct: 534 SLQKIGPIL 542
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
++L +D V+ A AS + + +L N ++P+F + DE VRL + C
Sbjct: 162 RNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA--C 219
Query: 82 VN 83
VN
Sbjct: 220 VN 221
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 129 bits (324), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 60/69 (86%), Positives = 67/69 (97%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 331 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 390
Query: 82 VNEVIGIQQ 90
VNEVIGI+Q
Sbjct: 391 VNEVIGIRQ 399
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 18 IKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS 77
I + + DPN + I LS + G+ T H+LP L D VR N+
Sbjct: 483 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAK 542
Query: 78 NLDCVNEVI 86
+L + ++
Sbjct: 543 SLQKIGPIL 551
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
++L +D V+ A AS + + +L N ++P+F + DE VRL + C
Sbjct: 171 RNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA--C 228
Query: 82 VN 83
VN
Sbjct: 229 VN 230
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 129 bits (324), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 60/69 (86%), Positives = 67/69 (97%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 331 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 390
Query: 82 VNEVIGIQQ 90
VNEVIGI+Q
Sbjct: 391 VNEVIGIRQ 399
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 18 IKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS 77
I + + DPN + I LS + G+ T H+LP L D VR N+
Sbjct: 483 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAK 542
Query: 78 NLDCVNEVI 86
+L + ++
Sbjct: 543 SLQKIGPIL 551
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
++L +D V+ A AS + + +L N ++P+F + DE VRL + C
Sbjct: 171 RNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA--C 228
Query: 82 VN 83
VN
Sbjct: 229 VN 230
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 129 bits (324), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 60/69 (86%), Positives = 67/69 (97%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389
Query: 82 VNEVIGIQQ 90
VNEVIGI+Q
Sbjct: 390 VNEVIGIRQ 398
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 18 IKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS 77
I + + DPN + I LS + G+ T H+LP L D VR N+
Sbjct: 482 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAK 541
Query: 78 NLDCVNEVI 86
+L + ++
Sbjct: 542 SLQKIGPIL 550
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
++L +D V+ A AS + + +L N ++P+F + DE VRL + C
Sbjct: 170 RNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA--C 227
Query: 82 VN 83
VN
Sbjct: 228 VN 229
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 129 bits (324), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 60/69 (86%), Positives = 67/69 (97%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389
Query: 82 VNEVIGIQQ 90
VNEVIGI+Q
Sbjct: 390 VNEVIGIRQ 398
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 18 IKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS 77
I + + DPN + I LS + G+ T H+LP L D VR N+
Sbjct: 482 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAK 541
Query: 78 NLDCVNEVI 86
+L + ++
Sbjct: 542 SLQKIGPIL 550
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
++L +D V+ A AS + + +L N ++P+F + DE VRL + C
Sbjct: 170 RNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA--C 227
Query: 82 VN 83
VN
Sbjct: 228 VN 229
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/69 (85%), Positives = 66/69 (95%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
++LV+D NQHVKSALASVI GLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 324 KELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 383
Query: 82 VNEVIGIQQ 90
VNEVIGI+Q
Sbjct: 384 VNEVIGIRQ 392
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 26 ADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85
DPN + I LS + G+ T H LP L D VR N+ +L + +
Sbjct: 484 GDPNYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGDPVANVRFNVAKSLQKIGPI 543
Query: 86 I 86
+
Sbjct: 544 L 544
>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 232
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 18 IKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS 77
I + + DPN + I LS + G+ T H+LP L D VR N+
Sbjct: 126 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAK 185
Query: 78 NLDCVNEVI 86
+L + ++
Sbjct: 186 SLQKIGPIL 194
>pdb|3HHG|A Chain A, Structure Of Crga, A Lysr-Type Transcriptional Regulator
From Neisseria Meningitidis.
pdb|3HHG|B Chain B, Structure Of Crga, A Lysr-Type Transcriptional Regulator
From Neisseria Meningitidis.
pdb|3HHG|C Chain C, Structure Of Crga, A Lysr-Type Transcriptional Regulator
From Neisseria Meningitidis.
pdb|3HHG|D Chain D, Structure Of Crga, A Lysr-Type Transcriptional Regulator
From Neisseria Meningitidis.
pdb|3HHG|E Chain E, Structure Of Crga, A Lysr-Type Transcriptional Regulator
From Neisseria Meningitidis.
pdb|3HHG|F Chain F, Structure Of Crga, A Lysr-Type Transcriptional Regulator
From Neisseria Meningitidis.
pdb|3HHG|G Chain G, Structure Of Crga, A Lysr-Type Transcriptional Regulator
From Neisseria Meningitidis.
pdb|3HHG|H Chain H, Structure Of Crga, A Lysr-Type Transcriptional Regulator
From Neisseria Meningitidis
Length = 306
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/111 (18%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 5 LTINSDG-NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQ 63
L++ +G + ++ + Q++ A + + A+ + G+ + V HLL ++
Sbjct: 57 LSLTEEGAQYFRRAQRILQEMAAAETEML--AVHEIPQGVLSVDSAMPMVLHLLAPLAAK 114
Query: 64 LKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTSFLTAVLVKSDY 114
+ P +RL+++S+ +N +I + D++ + G++D + L S +
Sbjct: 115 FNERYPHIRLSLVSSEGYIN-LIERKVDIALRAGELDDSGLRARHLFDSRF 164
>pdb|3HHF|B Chain B, Structure Of Crga Regulatory Domain, A Lysr-Type
Transcriptional Regulator From Neisseria Meningitidis.
pdb|3HHF|A Chain A, Structure Of Crga Regulatory Domain, A Lysr-Type
Transcriptional Regulator From Neisseria Meningitidis
Length = 213
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 55 HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTSFLTAVLVKSDY 114
HLL ++ + P +RL+++S+ +N +I + D++ + G++D + L S +
Sbjct: 20 HLLAPLAAKFNERYPHIRLSLVSSEGYIN-LIERKVDIALRAGELDDSGLRARHLFDSRF 78
>pdb|1M4Z|A Chain A, Crystal Structure Of The N-terminal Bah Domain Of Orc1p
pdb|1M4Z|B Chain B, Crystal Structure Of The N-terminal Bah Domain Of Orc1p
Length = 238
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQ 63
++T + GN + KR + A ++K + + +G + HN +++ Q
Sbjct: 16 IITTDEQGNIIDGGQKRLRRRGAKTEHYLKRSSDGIKLGRGDSVVMHNEAAGTYSVYMIQ 75
Query: 64 LKDECPEVRLNIISNL 79
E+RLN ++N+
Sbjct: 76 ------ELRLNTLNNV 85
>pdb|1ZHI|A Chain A, Complex Of The S. Cerevisiae Orc1 And Sir1 Interacting
Domains
Length = 225
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQ 63
++T + GN + KR + A ++K + + +G + HN +++ Q
Sbjct: 19 IITTDEQGNIIDGGQKRLRRRGAKTEHYLKRSSDGIKLGRGDSVVMHNEAAGTYSVYMIQ 78
Query: 64 LKDECPEVRLNIISNL 79
E+RLN ++N+
Sbjct: 79 ------ELRLNTLNNV 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,800,419
Number of Sequences: 62578
Number of extensions: 91890
Number of successful extensions: 266
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 55
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)