Query psy13759
Match_columns 114
No_of_seqs 101 out of 397
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 19:45:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0211|consensus 99.1 8.6E-11 1.9E-15 102.2 5.4 107 5-111 304-415 (759)
2 KOG0211|consensus 99.1 1.5E-10 3.2E-15 100.8 4.5 96 10-105 392-490 (759)
3 PF12755 Vac14_Fab1_bd: Vacuol 99.0 1.9E-09 4.2E-14 72.5 6.3 66 10-75 21-88 (97)
4 KOG1240|consensus 98.7 1.4E-08 3E-13 91.3 5.9 85 17-101 579-663 (1431)
5 PF13513 HEAT_EZ: HEAT-like re 98.6 1.2E-07 2.5E-12 56.5 5.1 52 30-81 1-54 (55)
6 PF02985 HEAT: HEAT repeat; I 98.5 1.3E-07 2.9E-12 50.8 3.1 29 17-45 1-29 (31)
7 PF13646 HEAT_2: HEAT repeats; 98.5 7.8E-07 1.7E-11 56.5 7.2 58 18-83 1-59 (88)
8 PF02985 HEAT: HEAT repeat; I 98.4 4.9E-07 1.1E-11 48.5 3.8 30 56-85 1-30 (31)
9 PF12717 Cnd1: non-SMC mitotic 98.4 4.8E-06 1E-10 60.7 9.4 93 11-104 20-112 (178)
10 cd00020 ARM Armadillo/beta-cat 98.3 3E-06 6.4E-11 55.5 6.6 89 14-102 5-99 (120)
11 PRK09687 putative lyase; Provi 98.2 6.6E-06 1.4E-10 64.3 7.3 57 18-82 130-186 (280)
12 KOG2171|consensus 98.1 1.5E-05 3.2E-10 71.7 9.4 88 13-100 386-477 (1075)
13 PF13646 HEAT_2: HEAT repeats; 98.1 2.3E-05 5E-10 49.6 7.2 57 16-80 31-88 (88)
14 PF01602 Adaptin_N: Adaptin N 98.0 2.8E-05 6.1E-10 63.6 7.7 77 4-82 103-179 (526)
15 PRK09687 putative lyase; Provi 98.0 3.6E-05 7.9E-10 60.1 7.9 61 16-82 159-219 (280)
16 PF12755 Vac14_Fab1_bd: Vacuol 97.9 7.7E-05 1.7E-09 50.1 7.3 73 33-106 3-77 (97)
17 PF12348 CLASP_N: CLASP N term 97.9 8.8E-05 1.9E-09 54.9 7.8 75 15-89 129-211 (228)
18 KOG2171|consensus 97.8 8.1E-05 1.7E-09 67.1 8.6 98 3-100 335-437 (1075)
19 cd00020 ARM Armadillo/beta-cat 97.8 0.00012 2.6E-09 47.8 6.4 69 16-84 49-120 (120)
20 KOG1243|consensus 97.8 0.00011 2.3E-09 63.7 7.7 100 4-103 318-417 (690)
21 KOG2137|consensus 97.6 0.00023 5E-09 61.9 7.0 104 4-107 337-441 (700)
22 KOG1240|consensus 97.6 0.00013 2.9E-09 66.5 5.7 96 4-99 605-705 (1431)
23 KOG1242|consensus 97.5 0.00041 8.8E-09 59.3 7.2 96 2-99 241-338 (569)
24 PTZ00429 beta-adaptin; Provisi 97.4 0.0011 2.3E-08 58.4 9.5 77 10-86 134-210 (746)
25 KOG2023|consensus 97.3 0.00036 7.8E-09 60.9 4.8 95 10-104 387-483 (885)
26 PRK13800 putative oxidoreducta 97.3 0.0011 2.4E-08 59.0 7.7 56 19-82 810-865 (897)
27 PF01602 Adaptin_N: Adaptin N 97.2 0.0031 6.7E-08 51.6 9.4 86 13-103 76-161 (526)
28 PRK13800 putative oxidoreducta 97.1 0.0021 4.5E-08 57.3 8.1 62 17-86 622-683 (897)
29 KOG2137|consensus 97.1 0.0024 5.1E-08 55.8 8.2 101 2-102 375-476 (700)
30 PF12348 CLASP_N: CLASP N term 96.9 0.012 2.5E-07 43.5 9.4 73 13-87 91-163 (228)
31 COG5096 Vesicle coat complex, 96.8 0.0055 1.2E-07 54.1 7.5 77 8-85 119-196 (757)
32 KOG1242|consensus 96.7 0.004 8.7E-08 53.3 6.2 89 14-103 370-462 (569)
33 PF07571 DUF1546: Protein of u 96.6 0.0062 1.3E-07 40.3 5.3 71 26-100 16-90 (92)
34 COG5181 HSH155 U2 snRNP splice 96.4 0.0037 7.9E-08 54.6 4.0 88 14-101 314-407 (975)
35 PF10508 Proteasom_PSMB: Prote 96.4 0.02 4.3E-07 48.1 8.2 78 8-85 69-149 (503)
36 COG1413 FOG: HEAT repeat [Ener 96.3 0.021 4.5E-07 44.6 7.4 61 16-84 74-135 (335)
37 PF13513 HEAT_EZ: HEAT-like re 96.3 0.01 2.3E-07 34.7 4.3 31 13-43 25-55 (55)
38 KOG1820|consensus 96.2 0.03 6.4E-07 50.0 8.6 86 14-99 369-458 (815)
39 COG1413 FOG: HEAT repeat [Ener 96.1 0.043 9.4E-07 42.7 8.3 73 16-100 43-115 (335)
40 KOG1241|consensus 96.1 0.019 4.1E-07 50.9 6.5 80 9-88 357-439 (859)
41 TIGR02270 conserved hypothetic 96.0 0.021 4.6E-07 47.1 6.2 58 18-83 149-206 (410)
42 PTZ00429 beta-adaptin; Provisi 95.9 0.075 1.6E-06 47.1 9.5 84 14-102 103-187 (746)
43 PF00514 Arm: Armadillo/beta-c 95.8 0.021 4.6E-07 31.7 4.1 31 53-83 10-40 (41)
44 KOG0213|consensus 95.7 0.044 9.5E-07 49.0 7.4 89 14-102 509-603 (1172)
45 PF12717 Cnd1: non-SMC mitotic 95.7 0.11 2.3E-06 37.7 8.5 88 14-101 61-157 (178)
46 KOG2023|consensus 95.7 0.018 3.9E-07 50.6 4.8 91 15-106 433-526 (885)
47 KOG1949|consensus 95.6 0.076 1.6E-06 47.2 8.3 93 17-110 175-279 (1005)
48 KOG1243|consensus 95.3 0.014 2.9E-07 51.1 2.8 85 5-89 358-442 (690)
49 PF10363 DUF2435: Protein of u 95.2 0.25 5.3E-06 32.8 8.1 77 21-98 8-85 (92)
50 KOG2032|consensus 95.2 0.13 2.9E-06 43.6 8.3 91 12-102 254-347 (533)
51 KOG1060|consensus 95.1 0.058 1.3E-06 48.2 6.1 66 17-84 144-209 (968)
52 PF12460 MMS19_C: RNAPII trans 95.0 0.19 4.1E-06 41.0 8.6 95 8-103 315-415 (415)
53 smart00567 EZ_HEAT E-Z type HE 95.0 0.039 8.4E-07 28.6 3.1 30 30-67 1-30 (30)
54 KOG0212|consensus 94.7 0.058 1.3E-06 46.6 4.8 87 13-100 81-173 (675)
55 KOG0166|consensus 94.4 0.11 2.4E-06 44.3 5.9 72 13-84 106-181 (514)
56 PF12530 DUF3730: Protein of u 94.4 0.38 8.2E-06 36.5 8.4 70 26-97 94-166 (234)
57 KOG1851|consensus 94.3 0.24 5.2E-06 47.0 8.2 92 11-102 1521-1616(1710)
58 KOG1061|consensus 94.1 0.21 4.6E-06 44.1 7.2 77 10-86 115-191 (734)
59 PF12719 Cnd3: Nuclear condens 93.8 0.5 1.1E-05 36.9 8.3 87 9-96 58-158 (298)
60 PF04826 Arm_2: Armadillo-like 93.6 0.74 1.6E-05 35.7 8.7 83 19-101 16-100 (254)
61 COG5181 HSH155 U2 snRNP splice 92.9 0.57 1.2E-05 41.5 7.8 83 14-96 839-924 (975)
62 TIGR02270 conserved hypothetic 92.9 0.43 9.3E-06 39.5 6.9 25 18-42 88-112 (410)
63 PF08713 DNA_alkylation: DNA a 92.6 0.71 1.5E-05 33.6 7.0 74 15-93 119-192 (213)
64 PF12765 Cohesin_HEAT: HEAT re 92.6 0.2 4.4E-06 28.4 3.3 24 54-77 17-40 (42)
65 KOG0915|consensus 92.5 0.64 1.4E-05 44.2 8.0 91 11-101 1034-1137(1702)
66 smart00638 LPD_N Lipoprotein N 92.5 0.35 7.6E-06 40.8 5.9 65 14-82 479-543 (574)
67 COG5096 Vesicle coat complex, 92.5 0.6 1.3E-05 41.6 7.4 66 14-83 90-155 (757)
68 KOG1241|consensus 92.4 0.58 1.3E-05 41.8 7.3 97 14-111 317-423 (859)
69 KOG4224|consensus 92.4 0.11 2.3E-06 43.4 2.6 77 11-87 371-449 (550)
70 KOG1248|consensus 92.1 0.82 1.8E-05 42.4 8.0 87 10-97 821-910 (1176)
71 KOG0213|consensus 91.9 0.94 2E-05 40.9 8.0 83 14-96 1034-1119(1172)
72 KOG1967|consensus 91.9 1.2 2.6E-05 40.7 8.6 108 5-112 895-1020(1030)
73 PF10274 ParcG: Parkin co-regu 91.6 1.6 3.4E-05 32.6 7.8 90 11-100 33-130 (183)
74 KOG4224|consensus 91.6 0.33 7.1E-06 40.6 4.6 70 15-84 207-280 (550)
75 PF12830 Nipped-B_C: Sister ch 91.6 1.4 3E-05 32.3 7.5 73 13-87 5-77 (187)
76 cd06561 AlkD_like A new struct 91.3 1.8 4E-05 31.0 7.9 69 19-91 108-176 (197)
77 PLN03200 cellulose synthase-in 91.1 0.86 1.9E-05 44.7 7.4 88 15-102 608-702 (2102)
78 PLN03200 cellulose synthase-in 91.0 1.3 2.9E-05 43.5 8.5 76 15-90 693-770 (2102)
79 PF03130 HEAT_PBS: PBS lyase H 90.8 0.23 5E-06 25.4 2.0 27 32-66 1-27 (27)
80 KOG2062|consensus 90.5 0.46 9.9E-06 42.5 4.7 70 24-99 563-633 (929)
81 smart00185 ARM Armadillo/beta- 90.5 0.53 1.1E-05 25.0 3.4 29 55-83 12-40 (41)
82 PF00514 Arm: Armadillo/beta-c 90.4 0.7 1.5E-05 25.3 4.0 32 13-44 9-40 (41)
83 KOG1949|consensus 90.3 0.47 1E-05 42.4 4.5 73 10-82 256-329 (1005)
84 PF11698 V-ATPase_H_C: V-ATPas 90.2 1.1 2.4E-05 31.3 5.5 67 17-83 44-114 (119)
85 COG5116 RPN2 26S proteasome re 90.2 2 4.3E-05 37.9 8.1 90 17-110 587-687 (926)
86 KOG0567|consensus 90.1 0.89 1.9E-05 36.1 5.6 55 18-80 220-276 (289)
87 KOG0166|consensus 90.1 1.4 3E-05 37.8 7.1 92 15-106 151-249 (514)
88 PF10274 ParcG: Parkin co-regu 89.9 1.6 3.6E-05 32.5 6.6 87 14-100 78-182 (183)
89 KOG2956|consensus 89.8 2.1 4.7E-05 36.4 7.9 85 10-103 404-492 (516)
90 PF10508 Proteasom_PSMB: Prote 89.8 1.1 2.4E-05 37.7 6.3 67 18-84 162-231 (503)
91 KOG1062|consensus 89.8 1.1 2.4E-05 40.2 6.5 79 4-85 131-209 (866)
92 PF04826 Arm_2: Armadillo-like 89.7 2.4 5.2E-05 32.9 7.7 67 17-83 55-123 (254)
93 KOG2259|consensus 89.6 1.1 2.4E-05 39.7 6.3 70 14-86 196-265 (823)
94 KOG2259|consensus 89.4 0.81 1.8E-05 40.5 5.3 78 20-99 377-455 (823)
95 KOG2062|consensus 89.1 0.89 1.9E-05 40.7 5.4 63 17-83 590-652 (929)
96 PF14868 DUF4487: Domain of un 88.6 1.8 3.9E-05 37.4 6.8 79 9-88 473-556 (559)
97 cd07064 AlkD_like_1 A new stru 88.1 2.5 5.3E-05 31.6 6.6 83 18-106 117-200 (208)
98 KOG1824|consensus 88.0 1.9 4.1E-05 39.8 6.7 84 17-100 967-1054(1233)
99 KOG1061|consensus 88.0 1.6 3.4E-05 38.8 6.2 84 17-104 87-170 (734)
100 PF12765 Cohesin_HEAT: HEAT re 87.7 0.83 1.8E-05 25.9 2.9 25 15-39 17-41 (42)
101 PF12719 Cnd3: Nuclear condens 87.1 6.6 0.00014 30.5 8.7 93 13-105 111-208 (298)
102 KOG0212|consensus 87.0 3.5 7.5E-05 36.1 7.5 77 11-87 162-240 (675)
103 PF05918 API5: Apoptosis inhib 86.9 1.2 2.6E-05 38.4 4.8 57 28-86 34-90 (556)
104 KOG2025|consensus 86.9 2 4.3E-05 38.5 6.1 93 10-105 120-226 (892)
105 KOG0414|consensus 86.5 0.92 2E-05 42.2 4.0 69 9-80 954-1023(1251)
106 PF01347 Vitellogenin_N: Lipop 86.1 4 8.6E-05 34.6 7.5 71 22-101 496-569 (618)
107 KOG1820|consensus 85.9 3.7 8E-05 37.0 7.4 82 8-89 245-329 (815)
108 PF01347 Vitellogenin_N: Lipop 85.7 1.7 3.8E-05 36.7 5.1 64 16-82 521-587 (618)
109 smart00185 ARM Armadillo/beta- 85.2 1.7 3.7E-05 22.9 3.3 29 16-44 12-40 (41)
110 COG5116 RPN2 26S proteasome re 84.8 1.7 3.8E-05 38.3 4.7 64 24-93 560-624 (926)
111 KOG1077|consensus 84.7 6.3 0.00014 35.5 8.1 90 11-101 324-415 (938)
112 PF08506 Cse1: Cse1; InterPro 84.4 4.5 9.8E-05 33.0 6.8 67 10-78 303-369 (370)
113 KOG1248|consensus 84.3 11 0.00023 35.4 9.6 95 10-105 779-880 (1176)
114 PF05918 API5: Apoptosis inhib 83.9 14 0.0003 32.1 9.8 65 13-79 56-120 (556)
115 KOG2160|consensus 83.8 13 0.00029 30.3 9.1 71 17-87 125-199 (342)
116 PF12460 MMS19_C: RNAPII trans 83.5 7.2 0.00016 31.8 7.7 85 14-100 269-371 (415)
117 KOG2025|consensus 82.1 6.9 0.00015 35.2 7.3 74 11-84 80-155 (892)
118 COG5098 Chromosome condensatio 82.1 6 0.00013 35.8 7.0 71 13-83 343-414 (1128)
119 KOG2149|consensus 82.0 14 0.0003 30.7 8.7 99 2-101 83-189 (393)
120 KOG1078|consensus 80.8 3.2 7E-05 37.3 4.9 80 2-83 452-531 (865)
121 KOG1517|consensus 79.2 5.7 0.00012 37.2 6.0 69 17-85 600-672 (1387)
122 PF11865 DUF3385: Domain of un 78.8 11 0.00025 26.9 6.5 76 11-86 81-159 (160)
123 PF05004 IFRD: Interferon-rela 78.7 31 0.00067 27.3 9.5 96 7-102 120-236 (309)
124 COG5215 KAP95 Karyopherin (imp 78.5 7 0.00015 34.6 6.1 78 9-86 359-439 (858)
125 PF14663 RasGEF_N_2: Rapamycin 78.2 7.5 0.00016 26.4 5.2 31 56-86 9-39 (115)
126 KOG1060|consensus 77.9 16 0.00035 33.3 8.3 75 18-102 110-188 (968)
127 KOG1943|consensus 77.7 21 0.00045 33.4 9.0 87 12-103 337-429 (1133)
128 KOG0567|consensus 77.4 6.8 0.00015 31.2 5.3 59 15-81 66-126 (289)
129 KOG0915|consensus 77.2 12 0.00025 36.3 7.5 82 17-99 1278-1361(1702)
130 PF05004 IFRD: Interferon-rela 77.2 14 0.0003 29.3 7.2 76 29-104 199-283 (309)
131 KOG1991|consensus 77.1 21 0.00047 33.0 8.9 96 11-106 457-556 (1010)
132 COG5098 Chromosome condensatio 76.8 8.8 0.00019 34.8 6.3 68 19-86 302-377 (1128)
133 KOG0414|consensus 76.6 13 0.00028 35.0 7.5 75 13-87 356-431 (1251)
134 cd08050 TAF6 TATA Binding Prot 76.4 13 0.00027 30.0 6.8 73 11-83 253-339 (343)
135 PF09324 DUF1981: Domain of un 76.3 18 0.00038 23.3 6.4 70 8-77 9-81 (86)
136 KOG4524|consensus 75.5 9.5 0.00021 35.1 6.3 74 14-87 276-351 (1014)
137 KOG1077|consensus 75.2 7.7 0.00017 35.0 5.6 82 25-107 157-238 (938)
138 COG5218 YCG1 Chromosome conden 75.1 13 0.00028 33.1 6.8 93 11-105 127-233 (885)
139 KOG2933|consensus 75.0 29 0.00063 28.3 8.4 83 17-100 130-215 (334)
140 COG5218 YCG1 Chromosome conden 75.0 26 0.00056 31.3 8.6 76 12-87 87-164 (885)
141 KOG2081|consensus 74.8 7.8 0.00017 33.6 5.4 70 28-102 364-434 (559)
142 KOG0392|consensus 74.5 6.8 0.00015 37.3 5.2 74 16-89 816-930 (1549)
143 KOG4413|consensus 74.3 10 0.00023 31.6 5.8 76 10-85 76-158 (524)
144 COG5240 SEC21 Vesicle coat com 74.0 7.7 0.00017 34.4 5.2 84 28-111 499-594 (898)
145 PF12074 DUF3554: Domain of un 73.5 33 0.00071 27.0 8.4 94 8-102 14-111 (339)
146 KOG1062|consensus 73.0 9.6 0.00021 34.5 5.7 76 24-102 112-187 (866)
147 KOG1517|consensus 72.6 11 0.00024 35.4 6.1 63 22-84 648-732 (1387)
148 cd00256 VATPase_H VATPase_H, r 72.5 5.8 0.00013 33.2 4.1 53 30-82 368-423 (429)
149 PF11865 DUF3385: Domain of un 72.4 33 0.0007 24.5 9.0 94 10-103 4-137 (160)
150 KOG2149|consensus 72.2 19 0.00042 29.9 6.9 82 25-106 67-164 (393)
151 KOG0168|consensus 71.7 7 0.00015 35.8 4.5 80 15-100 170-260 (1051)
152 PF01816 LRV: Leucine rich rep 69.9 4 8.7E-05 21.0 1.7 10 30-39 1-10 (26)
153 KOG1059|consensus 69.2 25 0.00054 31.8 7.3 70 14-85 142-211 (877)
154 PF10521 DUF2454: Protein of u 68.4 9.1 0.0002 29.7 4.2 45 46-90 107-154 (282)
155 COG5064 SRP1 Karyopherin (impo 68.0 24 0.00053 29.6 6.7 88 17-104 158-253 (526)
156 COG5215 KAP95 Karyopherin (imp 67.5 33 0.00072 30.6 7.6 93 12-104 635-733 (858)
157 COG5064 SRP1 Karyopherin (impo 67.2 9.7 0.00021 31.9 4.2 70 15-84 113-186 (526)
158 KOG1837|consensus 67.0 14 0.00031 35.7 5.7 65 24-88 1549-1615(1621)
159 PF13001 Ecm29: Proteasome sta 64.9 18 0.00038 30.6 5.5 60 28-87 386-446 (501)
160 COG4912 Predicted DNA alkylati 64.9 33 0.00071 26.5 6.5 67 16-85 118-184 (222)
161 KOG1824|consensus 64.8 55 0.0012 30.7 8.7 84 5-89 202-291 (1233)
162 COG5330 Uncharacterized protei 64.2 27 0.00058 28.8 6.2 61 21-81 12-73 (364)
163 COG5656 SXM1 Importin, protein 64.1 50 0.0011 30.2 8.2 92 15-106 459-551 (970)
164 PF12530 DUF3730: Protein of u 63.9 32 0.00069 26.0 6.3 78 3-87 110-188 (234)
165 smart00638 LPD_N Lipoprotein N 63.8 34 0.00073 28.9 7.0 84 14-103 440-527 (574)
166 PF08167 RIX1: rRNA processing 63.7 51 0.0011 23.5 8.8 77 11-87 20-100 (165)
167 KOG2274|consensus 63.5 46 0.00099 30.8 7.9 81 19-102 494-579 (1005)
168 PF13251 DUF4042: Domain of un 62.8 9.9 0.00021 28.2 3.2 55 32-86 2-71 (182)
169 KOG4653|consensus 61.6 62 0.0013 29.9 8.4 73 16-89 847-923 (982)
170 PF12054 DUF3535: Domain of un 59.8 23 0.0005 29.6 5.3 64 25-88 96-159 (441)
171 KOG1993|consensus 59.7 55 0.0012 30.1 7.7 86 11-99 483-569 (978)
172 cd03568 VHS_STAM VHS domain fa 59.7 59 0.0013 22.9 8.2 77 13-89 34-115 (144)
173 PF08167 RIX1: rRNA processing 58.6 64 0.0014 23.0 7.5 79 4-84 52-143 (165)
174 KOG0168|consensus 58.5 64 0.0014 29.9 7.9 93 14-106 209-307 (1051)
175 KOG2032|consensus 57.6 41 0.00089 29.0 6.4 78 10-87 290-374 (533)
176 KOG4653|consensus 57.3 32 0.00069 31.7 5.9 58 30-87 820-879 (982)
177 PF14868 DUF4487: Domain of un 57.1 11 0.00025 32.6 3.1 47 3-49 506-556 (559)
178 PF14500 MMS19_N: Dos2-interac 56.4 45 0.00098 25.8 6.1 51 54-104 207-257 (262)
179 PF03224 V-ATPase_H_N: V-ATPas 55.6 26 0.00056 27.4 4.7 66 17-83 107-178 (312)
180 cd03572 ENTH_epsin_related ENT 54.9 69 0.0015 22.2 6.5 68 19-89 4-72 (122)
181 KOG1059|consensus 54.5 57 0.0012 29.6 6.9 78 20-99 303-380 (877)
182 PF09450 DUF2019: Domain of un 53.9 7.2 0.00016 26.7 1.1 28 58-85 50-77 (106)
183 KOG1967|consensus 53.9 54 0.0012 30.5 6.8 93 11-103 862-959 (1030)
184 cd03561 VHS VHS domain family; 53.2 71 0.0015 21.9 8.5 77 13-89 34-117 (133)
185 cd03568 VHS_STAM VHS domain fa 52.1 24 0.00053 24.9 3.7 59 6-64 70-129 (144)
186 KOG2160|consensus 52.0 1.1E+02 0.0024 25.0 7.8 64 26-89 93-158 (342)
187 PF05804 KAP: Kinesin-associat 51.8 67 0.0015 28.7 7.0 70 15-84 289-360 (708)
188 KOG2973|consensus 51.6 86 0.0019 25.7 7.0 49 20-69 7-58 (353)
189 KOG2549|consensus 51.3 81 0.0018 27.6 7.2 87 12-102 284-384 (576)
190 PF12777 MT: Microtubule-bindi 50.8 25 0.00054 28.1 4.0 96 9-104 114-225 (344)
191 PF00790 VHS: VHS domain; Int 49.9 83 0.0018 21.7 7.2 79 11-89 37-123 (140)
192 PF13251 DUF4042: Domain of un 49.8 14 0.00031 27.3 2.2 26 18-43 42-67 (182)
193 PF09450 DUF2019: Domain of un 47.7 9.9 0.00021 26.0 1.0 26 21-46 52-77 (106)
194 smart00288 VHS Domain present 47.4 91 0.002 21.4 7.7 91 12-102 33-129 (133)
195 PF12397 U3snoRNP10: U3 small 47.1 83 0.0018 20.9 8.0 74 11-86 1-76 (121)
196 cd08050 TAF6 TATA Binding Prot 46.2 69 0.0015 25.8 5.8 95 5-101 199-312 (343)
197 cd06561 AlkD_like A new struct 45.8 53 0.0011 23.3 4.7 35 12-46 137-171 (197)
198 PF08664 YcbB: YcbB domain; I 45.0 27 0.00059 24.8 3.0 44 29-74 68-111 (134)
199 PF12333 Ipi1_N: Rix1 complex 44.5 62 0.0013 21.4 4.6 54 14-67 9-65 (102)
200 KOG0413|consensus 44.0 82 0.0018 30.0 6.4 73 8-80 608-681 (1529)
201 PF05804 KAP: Kinesin-associat 43.9 54 0.0012 29.3 5.2 55 14-68 329-385 (708)
202 KOG2933|consensus 43.4 24 0.00051 28.8 2.7 62 17-78 206-271 (334)
203 KOG1525|consensus 43.1 84 0.0018 30.1 6.5 73 13-85 256-330 (1266)
204 smart00802 UME Domain in UVSB 42.7 1E+02 0.0023 20.7 6.6 78 11-90 3-89 (107)
205 PF08389 Xpo1: Exportin 1-like 41.7 38 0.00083 22.5 3.3 48 54-101 81-133 (148)
206 KOG1048|consensus 41.0 1.3E+02 0.0029 27.1 7.1 67 17-85 276-350 (717)
207 KOG2213|consensus 40.5 96 0.0021 26.3 5.9 49 35-85 43-91 (460)
208 KOG2956|consensus 40.5 2.4E+02 0.0053 24.4 8.7 84 17-100 330-416 (516)
209 KOG2759|consensus 40.2 47 0.001 28.1 4.1 66 17-82 367-436 (442)
210 PF09268 Clathrin-link: Clathr 40.0 19 0.00042 18.2 1.1 21 54-74 2-22 (24)
211 PF11701 UNC45-central: Myosin 39.7 57 0.0012 23.1 4.0 78 22-100 10-96 (157)
212 PF02944 BESS: BESS motif; In 39.5 30 0.00064 18.7 2.0 33 10-42 4-36 (37)
213 KOG0868|consensus 39.0 17 0.00037 27.6 1.2 14 25-38 13-26 (217)
214 cd00864 PI3Ka Phosphoinositide 38.6 1.2E+02 0.0026 21.5 5.5 32 68-103 84-115 (152)
215 PF03224 V-ATPase_H_N: V-ATPas 38.3 1.5E+02 0.0033 23.0 6.6 34 56-89 106-139 (312)
216 cd03569 VHS_Hrs_Vps27p VHS dom 37.9 1.4E+02 0.0031 20.9 8.0 76 14-89 39-119 (142)
217 KOG1293|consensus 37.8 1.5E+02 0.0033 26.5 6.9 73 15-87 376-451 (678)
218 KOG4199|consensus 37.4 95 0.0021 26.1 5.3 40 56-95 284-324 (461)
219 PF12074 DUF3554: Domain of un 36.8 1.7E+02 0.0036 23.0 6.6 65 29-96 180-246 (339)
220 KOG2011|consensus 36.1 55 0.0012 30.7 4.1 60 26-85 297-356 (1048)
221 cd03567 VHS_GGA VHS domain fam 36.0 1.5E+02 0.0033 20.8 6.7 74 15-88 37-120 (139)
222 cd03569 VHS_Hrs_Vps27p VHS dom 35.8 64 0.0014 22.6 3.7 58 8-65 76-134 (142)
223 PF08161 NUC173: NUC173 domain 35.1 1.9E+02 0.0041 21.5 6.6 38 55-92 41-78 (198)
224 KOG2274|consensus 35.1 1.2E+02 0.0027 28.2 6.1 78 10-88 84-161 (1005)
225 KOG1837|consensus 34.7 2.7E+02 0.0058 27.6 8.3 90 13-104 1496-1592(1621)
226 COG5330 Uncharacterized protei 34.6 67 0.0014 26.6 4.1 37 11-48 42-78 (364)
227 PF10363 DUF2435: Protein of u 33.4 1.4E+02 0.003 19.5 5.2 45 56-100 4-49 (92)
228 KOG1020|consensus 33.2 2.2E+02 0.0047 28.2 7.5 69 17-87 856-924 (1692)
229 KOG2081|consensus 33.0 3.2E+02 0.007 24.0 8.0 62 26-89 399-462 (559)
230 PF08713 DNA_alkylation: DNA a 33.0 49 0.0011 23.8 2.8 35 13-47 152-186 (213)
231 KOG3534|consensus 32.9 1E+02 0.0022 28.4 5.1 75 12-86 923-999 (1253)
232 PF04118 Dopey_N: Dopey, N-ter 32.7 2.6E+02 0.0056 22.4 7.1 79 17-96 98-179 (307)
233 PF07834 RanGAP1_C: RanGAP1 C- 31.5 67 0.0015 24.0 3.3 40 62-110 75-115 (183)
234 KOG0392|consensus 31.4 2.7E+02 0.0059 27.2 7.7 72 15-86 166-239 (1549)
235 COG4912 Predicted DNA alkylati 31.4 48 0.0011 25.5 2.6 39 8-46 146-184 (222)
236 PF08161 NUC173: NUC173 domain 31.3 88 0.0019 23.3 4.0 91 13-105 38-128 (198)
237 PF13001 Ecm29: Proteasome sta 31.3 3.2E+02 0.007 23.0 8.6 86 16-103 24-112 (501)
238 PF10521 DUF2454: Protein of u 30.9 2.5E+02 0.0054 21.7 7.4 36 16-51 119-154 (282)
239 PF08064 UME: UME (NUC010) dom 30.7 1.6E+02 0.0035 19.4 8.3 78 12-91 4-90 (107)
240 PHA02855 anti-apoptotic membra 30.0 75 0.0016 23.6 3.3 56 34-89 51-111 (180)
241 smart00549 TAFH TAF homology. 29.9 1.5E+02 0.0032 19.9 4.4 65 15-79 6-80 (92)
242 PF08158 NUC130_3NT: NUC130/3N 29.1 63 0.0014 19.1 2.4 38 43-82 5-46 (52)
243 cd00872 PI3Ka_I Phosphoinositi 29.1 1.9E+02 0.0042 21.1 5.4 33 68-104 84-116 (171)
244 PF06685 DUF1186: Protein of u 28.1 2.6E+02 0.0056 21.7 6.2 57 20-76 115-175 (249)
245 KOG1992|consensus 27.8 1.3E+02 0.0029 27.8 5.1 93 10-103 454-554 (960)
246 KOG1848|consensus 27.5 2.3E+02 0.005 27.8 6.7 49 17-65 998-1050(1610)
247 KOG0267|consensus 27.3 1.7E+02 0.0036 26.7 5.5 73 14-87 674-746 (825)
248 KOG0904|consensus 26.0 97 0.0021 28.9 3.9 39 61-103 615-655 (1076)
249 PF12685 SpoIIIAH: SpoIIIAH-li 25.5 1.4E+02 0.0029 22.0 4.1 51 46-96 92-144 (196)
250 PF12830 Nipped-B_C: Sister ch 25.4 2.7E+02 0.0057 20.1 8.0 70 16-86 45-142 (187)
251 COG4335 DNA alkylation repair 25.4 62 0.0014 23.8 2.2 67 21-87 44-114 (167)
252 PF11099 M11L: Apoptosis regul 25.3 82 0.0018 23.3 2.8 28 60-87 70-97 (167)
253 KOG2973|consensus 25.2 1.1E+02 0.0024 25.1 3.8 29 57-85 5-33 (353)
254 KOG1895|consensus 24.3 1.3E+02 0.0028 28.0 4.4 61 13-76 17-77 (957)
255 PF10475 DUF2450: Protein of u 24.3 1.7E+02 0.0038 22.7 4.7 79 23-105 171-277 (291)
256 PF14663 RasGEF_N_2: Rapamycin 24.0 1.5E+02 0.0033 19.9 3.8 35 12-46 4-38 (115)
257 COG1164 Oligoendopeptidase F [ 24.0 2.4E+02 0.0051 24.6 5.8 33 57-89 192-224 (598)
258 PF01851 PC_rep: Proteasome/cy 23.8 1.1E+02 0.0023 16.3 2.5 18 55-72 17-34 (35)
259 PF14664 RICTOR_N: Rapamycin-i 23.7 2.7E+02 0.0058 22.7 5.8 67 12-78 104-170 (371)
260 KOG1293|consensus 23.6 2E+02 0.0044 25.7 5.3 69 15-83 418-489 (678)
261 KOG1822|consensus 23.5 3.7E+02 0.0081 27.3 7.3 81 7-87 867-948 (2067)
262 PF07539 DRIM: Down-regulated 23.4 1.5E+02 0.0033 20.8 3.9 26 55-80 17-42 (141)
263 KOG1020|consensus 22.7 2.9E+02 0.0063 27.4 6.4 69 17-85 817-885 (1692)
264 cd00197 VHS_ENTH_ANTH VHS, ENT 21.9 2.4E+02 0.0052 18.4 7.1 35 14-48 35-69 (115)
265 PF14911 MMS22L_C: S-phase gen 21.9 4.5E+02 0.0098 21.7 6.8 85 17-103 257-346 (373)
266 cd00870 PI3Ka_III Phosphoinosi 21.6 2.5E+02 0.0055 20.3 4.8 33 68-104 91-123 (166)
267 PHA02861 uncharacterized prote 21.4 1.8E+02 0.004 21.0 3.9 48 35-82 96-148 (149)
268 PF14500 MMS19_N: Dos2-interac 21.2 2.6E+02 0.0057 21.6 5.1 47 22-68 5-55 (262)
269 TIGR03042 PS_II_psbQ_bact phot 21.2 2.3E+02 0.0051 20.3 4.5 52 15-75 49-101 (142)
270 PLN03076 ARF guanine nucleotid 21.0 8.7E+02 0.019 24.5 9.7 73 15-87 1136-1215(1780)
271 COG5099 RNA-binding protein of 21.0 2.2E+02 0.0047 26.0 5.1 84 13-103 544-628 (777)
272 PF04078 Rcd1: Cell differenti 21.0 3E+02 0.0065 21.8 5.4 31 10-42 202-232 (262)
273 KOG2213|consensus 20.7 3.8E+02 0.0083 22.8 6.2 67 22-100 67-133 (460)
274 KOG1058|consensus 20.7 1.8E+02 0.0039 26.8 4.5 65 17-85 100-164 (948)
275 cd07920 Pumilio Pumilio-family 20.4 3.9E+02 0.0085 20.3 7.1 15 14-28 41-55 (322)
276 PLN03076 ARF guanine nucleotid 20.4 2.4E+02 0.0053 28.2 5.6 49 56-104 1345-1404(1780)
277 PF08623 TIP120: TATA-binding 20.3 3.6E+02 0.0077 19.7 6.5 62 27-89 38-99 (169)
278 KOG1078|consensus 20.1 3.4E+02 0.0074 25.0 6.1 72 14-87 243-314 (865)
No 1
>KOG0211|consensus
Probab=99.11 E-value=8.6e-11 Score=102.23 Aligned_cols=107 Identities=24% Similarity=0.207 Sum_probs=95.9
Q ss_pred hccCChh-HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 5 LTINSDG-NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 5 ~~~~~~~-~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
+..++.+ ...+.+.|.+.++.+|.+|+||+++++.+.++++.+|++.+...+.|.+..+++|+++|+|.+++.+..+++
T Consensus 304 ~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~ 383 (759)
T KOG0211|consen 304 LDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLA 383 (759)
T ss_pred HHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHh
Confidence 3344555 778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhC----hhhHhhhHhHHHHHHHHHHHHHhh
Q psy13759 84 EVIG----IQQDVSFKLGQVDRTSFLTAVLVK 111 (114)
Q Consensus 84 ~~l~----~~~i~~~iLP~i~~l~~~~~~~~~ 111 (114)
..+. ++...++++|.++.++--.+--|+
T Consensus 384 ~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr 415 (759)
T KOG0211|consen 384 CYLNASCYPNIPDSSILPEVQVLVLDNALHVR 415 (759)
T ss_pred hhcCcccccccchhhhhHHHHHHHhcccchHH
Confidence 9999 778889999999998865554443
No 2
>KOG0211|consensus
Probab=99.05 E-value=1.5e-10 Score=100.77 Aligned_cols=96 Identities=47% Similarity=0.534 Sum_probs=91.5
Q ss_pred hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHH---HhHHHHHhhh
Q psy13759 10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNII---SNLDCVNEVI 86 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~---~~l~~~~~~l 86 (114)
++...++++|.++.++.|.+.+||.+.|..++.+.+.+|++.+.+.++|.++++++|+.++||.+.+ ..+....+++
T Consensus 392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~ 471 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVI 471 (759)
T ss_pred cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcc
Confidence 7778888999999999999999999999999999999999999999999999999999999999999 8888999999
Q ss_pred ChhhHhhhHhHHHHHHHHH
Q psy13759 87 GIQQDVSFKLGQVDRTSFL 105 (114)
Q Consensus 87 ~~~~i~~~iLP~i~~l~~~ 105 (114)
|.+...+..||.+.+++..
T Consensus 472 g~~~~s~slLp~i~el~~d 490 (759)
T KOG0211|consen 472 GISTVSNSLLPAIVELAED 490 (759)
T ss_pred cchhhhhhhhhhhhhhccc
Confidence 9999999999999887654
No 3
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.97 E-value=1.9e-09 Score=72.46 Aligned_cols=66 Identities=9% Similarity=0.112 Sum_probs=59.2
Q ss_pred hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHH
Q psy13759 10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNI 75 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a 75 (114)
.+...++|+|.+-...+|++|||||++++.+.++++..+.+... .++.+.+.+++.|.++.||.++
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 55677889999999999999999999999999999998877754 5788888999999999999887
No 4
>KOG1240|consensus
Probab=98.75 E-value=1.4e-08 Score=91.33 Aligned_cols=85 Identities=21% Similarity=0.276 Sum_probs=80.7
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKL 96 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iL 96 (114)
+-..+..|+.|+.+-||.++-+.+..+|.+||++.+.+.|++++..+|+|.++..|.+...+|.+++-.+|...+.+.|+
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyll 658 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLL 658 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHH
Confidence 45566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy13759 97 GQVDR 101 (114)
Q Consensus 97 P~i~~ 101 (114)
|++++
T Consensus 659 PLl~Q 663 (1431)
T KOG1240|consen 659 PLLQQ 663 (1431)
T ss_pred HHHHH
Confidence 99974
No 5
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.60 E-value=1.2e-07 Score=56.45 Aligned_cols=52 Identities=23% Similarity=0.186 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHccccccCcch--hhhhhHHHHHHhcCCCChHHHHHHHHhHHH
Q psy13759 30 QHVKSALASVIMGLSPILGKHN--TVDHLLPLFLSQLKDECPEVRLNIISNLDC 81 (114)
Q Consensus 30 ~~VR~~~a~~l~~la~~lg~e~--~~~~llP~~~~LL~D~e~EVR~~a~~~l~~ 81 (114)
|+||.+++..|+.+++..+... ....++|.+..+|+|++.+||.+++..|..
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 8999999999999887766543 346899999999999999999999988764
No 6
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=98.50 E-value=1.3e-07 Score=50.75 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=15.5
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHcccc
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSP 45 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~ 45 (114)
++|.+.++++|++|+||.+++..++++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35555555555555555555555555543
No 7
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.49 E-value=7.8e-07 Score=56.46 Aligned_cols=58 Identities=28% Similarity=0.373 Sum_probs=48.4
Q ss_pred HHHHHH-hcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 18 IKRTQD-LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 18 lP~l~~-L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
+|.+.+ +.+|++|.||..++..++++. ....+|.+.++++|+++.||.+++..+..++
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIG 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 345544 559999999999999999654 3377999999999999999999999999874
No 8
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=98.40 E-value=4.9e-07 Score=48.51 Aligned_cols=30 Identities=40% Similarity=0.615 Sum_probs=27.3
Q ss_pred hHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 56 LLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 56 llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
++|.++++++|++++||.+++..+..+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999875
No 9
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.36 E-value=4.8e-06 Score=60.68 Aligned_cols=93 Identities=16% Similarity=0.046 Sum_probs=80.3
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ 90 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~ 90 (114)
+.+....+|.+...++|+++.||..+...+..+... |.-..+..++..++.++.|++++||..|..-+.++....+++.
T Consensus 20 ~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~ 98 (178)
T PF12717_consen 20 PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNI 98 (178)
T ss_pred cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchH
Confidence 456777899999999999999999999999887632 4445556788999999999999999999999999999999999
Q ss_pred HhhhHhHHHHHHHH
Q psy13759 91 DVSFKLGQVDRTSF 104 (114)
Q Consensus 91 i~~~iLP~i~~l~~ 104 (114)
+.+.+..++..|+.
T Consensus 99 i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 99 IYNNFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHHhC
Confidence 98888888887765
No 10
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.30 E-value=3e-06 Score=55.53 Aligned_cols=89 Identities=15% Similarity=0.011 Sum_probs=69.1
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccc---cCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh-
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPI---LGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ- 89 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~---lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~- 89 (114)
...++|.+..+.+|.+|++|..++..+..++.. ..........+|.+.++++|++++||..++..+..++..-+..
T Consensus 5 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~ 84 (120)
T cd00020 5 QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNK 84 (120)
T ss_pred HcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHH
Confidence 445889999999999999999999999999964 2234444589999999999999999999999999998865321
Q ss_pred -h-HhhhHhHHHHHH
Q psy13759 90 -Q-DVSFKLGQVDRT 102 (114)
Q Consensus 90 -~-i~~~iLP~i~~l 102 (114)
. ....++|.+.++
T Consensus 85 ~~~~~~g~l~~l~~~ 99 (120)
T cd00020 85 LIVLEAGGVPKLVNL 99 (120)
T ss_pred HHHHHCCChHHHHHH
Confidence 1 222356665543
No 11
>PRK09687 putative lyase; Provisional
Probab=98.18 E-value=6.6e-06 Score=64.31 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=29.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759 18 IKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 18 lP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
++.+..+..|++|+||++++..++++. ....+|.++.+++|++++||..++..|..+
T Consensus 130 ~~~l~~~~~D~~~~VR~~a~~aLg~~~--------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 130 VEQSQITAFDKSTNVRFAVAFALSVIN--------DEAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 334444455555555555555554432 122445555555555555555555555544
No 12
>KOG2171|consensus
Probab=98.14 E-value=1.5e-05 Score=71.71 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=75.5
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhh---hhHHHHHHhcCCC-ChHHHHHHHHhHHHHHhhhCh
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVD---HLLPLFLSQLKDE-CPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~---~llP~~~~LL~D~-e~EVR~~a~~~l~~~~~~l~~ 88 (114)
...+|+|.+...++|+.+|||++++..+++++.-++++..+. .+.|.++..+.|. .+.|..+|+..+.+|.+....
T Consensus 386 ~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~ 465 (1075)
T KOG2171|consen 386 NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK 465 (1075)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH
Confidence 456799999999999999999999999999999999988774 5888999999996 679999999999999999988
Q ss_pred hhHhhhHhHHHH
Q psy13759 89 QQDVSFKLGQVD 100 (114)
Q Consensus 89 ~~i~~~iLP~i~ 100 (114)
+.+..++=+.++
T Consensus 466 ~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 466 SILEPYLDGLME 477 (1075)
T ss_pred HHHHHHHHHHHH
Confidence 776555433333
No 13
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.09 E-value=2.3e-05 Score=49.59 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=48.2
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCC-ChHHHHHHHHhHH
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDE-CPEVRLNIISNLD 80 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~-e~EVR~~a~~~l~ 80 (114)
+.+|.+..+++|++|.||.+++..++.+. ....+|.+.++++|+ +..||.+++.+|.
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIG--------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 57899999999999999999999999984 356889999988775 6778999988763
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.99 E-value=2.8e-05 Score=63.59 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=64.4
Q ss_pred hhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759 4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 4 l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
++... ..+....+.|.+..++.|++|.||..++..+..+.+..+...-.. ++|.+.++++|+++.|+.+|+.-+..+
T Consensus 103 l~~i~-~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 103 LSNIR-TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHH--SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred hhhhc-ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 44433 455677899999999999999999999999999997755443334 899999999999999999999999888
No 15
>PRK09687 putative lyase; Provisional
Probab=97.98 E-value=3.6e-05 Score=60.14 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=51.9
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
..+|.+..+++|++|.||+.++..++.+.. .....+|.+.++++|+.++||..++..|.++
T Consensus 159 ~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 159 AAIPLLINLLKDPNGDVRNWAAFALNSNKY------DNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcCCC------CCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 467888889999999999999999999821 1235779999999999999999999999764
No 16
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.90 E-value=7.7e-05 Score=50.05 Aligned_cols=73 Identities=19% Similarity=0.163 Sum_probs=55.6
Q ss_pred HHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHHHHHHHH
Q psy13759 33 KSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTSFLT 106 (114)
Q Consensus 33 R~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~~l~~~~ 106 (114)
|++---.+..++-.+|++... ++|+|.++..+.|+++.||..+.+++.++++..+.+.+ .++-..|..|+.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l-~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEIL-PYFNEIFDALCKLS 77 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 555556666777777776443 68999999999999999999999999999999987543 35555555555543
No 17
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.86 E-value=8.8e-05 Score=54.94 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=58.8
Q ss_pred Hhh-HHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchh----hhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 15 SKS-IKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNT----VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 15 ~~i-lP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~----~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
..+ .+.+....+++||.||..+++.+..+.+..| .... .+.++|.+..++.|..++||.++-..+..+.+..
T Consensus 129 ~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 129 PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp -HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344 7888899999999999999999999988888 2222 2569999999999999999999999999999998
Q ss_pred Chh
Q psy13759 87 GIQ 89 (114)
Q Consensus 87 ~~~ 89 (114)
|..
T Consensus 209 ~~~ 211 (228)
T PF12348_consen 209 PER 211 (228)
T ss_dssp -HH
T ss_pred CHh
Confidence 865
No 18
>KOG2171|consensus
Probab=97.85 E-value=8.1e-05 Score=67.13 Aligned_cols=98 Identities=10% Similarity=0.069 Sum_probs=83.0
Q ss_pred chhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhHH
Q psy13759 3 LLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNLD 80 (114)
Q Consensus 3 ~l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l~ 80 (114)
.|..+++++.+..-++|.+..+++.++|+=|.+.--.|..+++--++.+-. ..++|+.++.++|++|.||-+|.+.+.
T Consensus 335 rlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naig 414 (1075)
T KOG2171|consen 335 RLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIG 414 (1075)
T ss_pred HHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 356778999999999999999999999999999999999988766655544 479999999999999999999999999
Q ss_pred HHHhhhChhh---HhhhHhHHHH
Q psy13759 81 CVNEVIGIQQ---DVSFKLGQVD 100 (114)
Q Consensus 81 ~~~~~l~~~~---i~~~iLP~i~ 100 (114)
.++.-+.|+. .-+.++|.+.
T Consensus 415 Q~stdl~p~iqk~~~e~l~~aL~ 437 (1075)
T KOG2171|consen 415 QMSTDLQPEIQKKHHERLPPALI 437 (1075)
T ss_pred hhhhhhcHHHHHHHHHhccHHHH
Confidence 9999988874 3345555543
No 19
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.76 E-value=0.00012 Score=47.79 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=58.9
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc--c-hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGK--H-NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~--e-~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
.++|.+..+.+|++++||..++..+..++..-+. + .....++|.+.++++|.+.++|..++..+..+++
T Consensus 49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 7999999999999999999999999999976532 2 2224689999999999999999999998887763
No 20
>KOG1243|consensus
Probab=97.76 E-value=0.00011 Score=63.73 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=92.5
Q ss_pred hhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 4 l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
+|+.++.+++...++|++.+|..-..-.||..+-+.+.+..+++.++...+.++|.+..-+.|+++-+|...+..+..++
T Consensus 318 ~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La 397 (690)
T KOG1243|consen 318 LGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLA 397 (690)
T ss_pred hhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence 46777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhChhhHhhhHhHHHHHHH
Q psy13759 84 EVIGIQQDVSFKLGQVDRTS 103 (114)
Q Consensus 84 ~~l~~~~i~~~iLP~i~~l~ 103 (114)
..++..++-..++-++.++.
T Consensus 398 ~kL~~~~Ln~Ellr~~ar~q 417 (690)
T KOG1243|consen 398 PKLSKRNLNGELLRYLARLQ 417 (690)
T ss_pred hhhchhhhcHHHHHHHHhhC
Confidence 99999887777777776654
No 21
>KOG2137|consensus
Probab=97.57 E-value=0.00023 Score=61.85 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=88.5
Q ss_pred hhccCChhHHHHhhHHHHHHhcC-CCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759 4 LLTINSDGNFVSKSIKRTQDLVA-DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 4 l~~~~~~~~~~~~ilP~l~~L~~-D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
++..++..++..+++|.+....+ -.+-+++-.+-++..-|.+.+.++...++++|.+..-++|++..+...++..++.+
T Consensus 337 i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv 416 (700)
T KOG2137|consen 337 IAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTV 416 (700)
T ss_pred hhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHH
Confidence 34456777778888888877666 55667888888888889999999999999999999999999999999999999999
Q ss_pred HhhhChhhHhhhHhHHHHHHHHHHH
Q psy13759 83 NEVIGIQQDVSFKLGQVDRTSFLTA 107 (114)
Q Consensus 83 ~~~l~~~~i~~~iLP~i~~l~~~~~ 107 (114)
++.++...+.+.|+|.+..+.|.|.
T Consensus 417 ~e~iD~~~vk~~ilP~l~~l~~~tt 441 (700)
T KOG2137|consen 417 AESIDVPFVKQAILPRLKNLAFKTT 441 (700)
T ss_pred HHhccHHHHHHHHHHHhhcchhccc
Confidence 9999988899999999999977664
No 22
>KOG1240|consensus
Probab=97.57 E-value=0.00013 Score=66.45 Aligned_cols=96 Identities=17% Similarity=0.194 Sum_probs=81.6
Q ss_pred hhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 4 l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
||..+..+.--+.||+.+...++|+.|+.|.++=+.|.++|-.+|.....+.++|++.+=|.|.|.-|=..|++.+..++
T Consensus 605 LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Li 684 (1431)
T KOG1240|consen 605 LCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILI 684 (1431)
T ss_pred HHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHH
Confidence 45556666666679999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhCh-----hhHhhhHhHHH
Q psy13759 84 EVIGI-----QQDVSFKLGQV 99 (114)
Q Consensus 84 ~~l~~-----~~i~~~iLP~i 99 (114)
+.=-- -.+.+.++|++
T Consensus 685 k~~ll~K~~v~~i~~~v~PlL 705 (1431)
T KOG1240|consen 685 KLGLLRKPAVKDILQDVLPLL 705 (1431)
T ss_pred HhcccchHHHHHHHHhhhhhe
Confidence 75321 13556666664
No 23
>KOG1242|consensus
Probab=97.47 E-value=0.00041 Score=59.27 Aligned_cols=96 Identities=19% Similarity=0.095 Sum_probs=75.9
Q ss_pred cchhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc--hhhhhhHHHHHHhcCCCChHHHHHHHHhH
Q psy13759 2 KLLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH--NTVDHLLPLFLSQLKDECPEVRLNIISNL 79 (114)
Q Consensus 2 ~~l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e--~~~~~llP~~~~LL~D~e~EVR~~a~~~l 79 (114)
|.+-.++++.....-+.|.+..+..+ .||=..+..+.++.++..-++. .+...++|.+.+-|.|.-+|||.++.+.+
T Consensus 241 kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l 319 (569)
T KOG1242|consen 241 KAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETL 319 (569)
T ss_pred HHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHH
Confidence 34555667777665555555666666 9999999999999888777764 44468999999999999999999999999
Q ss_pred HHHHhhhChhhHhhhHhHHH
Q psy13759 80 DCVNEVIGIQQDVSFKLGQV 99 (114)
Q Consensus 80 ~~~~~~l~~~~i~~~iLP~i 99 (114)
.+++..+.-..| +.++|.+
T Consensus 320 ~~~~svidN~dI-~~~ip~L 338 (569)
T KOG1242|consen 320 LKFGSVIDNPDI-QKIIPTL 338 (569)
T ss_pred HHHHHhhccHHH-HHHHHHH
Confidence 999999976654 5666665
No 24
>PTZ00429 beta-adaptin; Provisional
Probab=97.43 E-value=0.0011 Score=58.43 Aligned_cols=77 Identities=18% Similarity=0.078 Sum_probs=65.8
Q ss_pred hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
-..+...+++.+++++.|+++.||.++|-.+..+-+.-+.-.....+++.+.+|+.|+++.|..+|+..+..+++.-
T Consensus 134 ~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 134 VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 34467788999999999999999999999999987666544445578999999999999999999999999998643
No 25
>KOG2023|consensus
Probab=97.29 E-value=0.00036 Score=60.87 Aligned_cols=95 Identities=14% Similarity=0.105 Sum_probs=77.2
Q ss_pred hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHcccccc--CcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPIL--GKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~l--g~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
++++...++|.++..+....|-||.+..-+++.||+-- |--.---+++|+++++|.|.-|=||....=.++.+++++-
T Consensus 387 ~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~ 466 (885)
T KOG2023|consen 387 GDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVV 466 (885)
T ss_pred HHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHh
Confidence 56678889999999999999999999888888887421 1111123689999999999999999999999999999997
Q ss_pred hhhHhhhHhHHHHHHHH
Q psy13759 88 IQQDVSFKLGQVDRTSF 104 (114)
Q Consensus 88 ~~~i~~~iLP~i~~l~~ 104 (114)
.+.--+++.|.+..|-+
T Consensus 467 ~~~~~~~f~pvL~~ll~ 483 (885)
T KOG2023|consen 467 QDSRDEYFKPVLEGLLR 483 (885)
T ss_pred cCChHhhhHHHHHHHHH
Confidence 77666778888776644
No 26
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.26 E-value=0.0011 Score=59.01 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=39.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759 19 KRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 19 P~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
+.+...++|++|.||.+++..+..+. ...-+|.+..+|+|+.+.||.+++..|..+
T Consensus 810 ~~l~~aL~d~d~~VR~~Aa~aL~~l~--------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 810 AAATAALRASAWQVRQGAARALAGAA--------ADVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhcc--------ccchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 34555667777777777777776654 123457888888888888888888888775
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.22 E-value=0.0031 Score=51.61 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=67.4
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHh
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDV 92 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~ 92 (114)
...-+...+++-++|+++.+|..+-..+..++ .....+.+.|.+.+++.|+.|.||.+|+..+.++.+. .|+.+.
T Consensus 76 ~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~ 150 (526)
T PF01602_consen 76 LLILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK-DPDLVE 150 (526)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CHCCHH
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CHHHHH
Confidence 45557888888899999999999999888877 3334467999999999999999999999999999887 454443
Q ss_pred hhHhHHHHHHH
Q psy13759 93 SFKLGQVDRTS 103 (114)
Q Consensus 93 ~~iLP~i~~l~ 103 (114)
..++|.+.++-
T Consensus 151 ~~~~~~l~~lL 161 (526)
T PF01602_consen 151 DELIPKLKQLL 161 (526)
T ss_dssp GGHHHHHHHHT
T ss_pred HHHHHHHhhhc
Confidence 22566666553
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.14 E-value=0.0021 Score=57.33 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=44.0
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
-++.+...++|+++.||..++..+.++. ....+|.+..+|+|++++||.+++..+.++.+..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~ 683 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL 683 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence 3455566667888888888888777764 2346677777788888888888888777765443
No 29
>KOG2137|consensus
Probab=97.14 E-value=0.0024 Score=55.75 Aligned_cols=101 Identities=10% Similarity=0.064 Sum_probs=93.0
Q ss_pred cchhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCC-CChHHHHHHHHhHH
Q psy13759 2 KLLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKD-ECPEVRLNIISNLD 80 (114)
Q Consensus 2 ~~l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D-~e~EVR~~a~~~l~ 80 (114)
-+|.+-++++++.++|+|++....+|..-++-..+-..+.-+++.+.-...++.++|-+-++.-- +...||.+++-.+.
T Consensus 375 dlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~ 454 (700)
T KOG2137|consen 375 DLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLA 454 (700)
T ss_pred HHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHH
Confidence 34666789999999999999999999999999999999999999999888889999999998655 68999999999999
Q ss_pred HHHhhhChhhHhhhHhHHHHHH
Q psy13759 81 CVNEVIGIQQDVSFKLGQVDRT 102 (114)
Q Consensus 81 ~~~~~l~~~~i~~~iLP~i~~l 102 (114)
++.+.++.-.++..++|+.+..
T Consensus 455 ~l~q~lD~~~v~d~~lpi~~~~ 476 (700)
T KOG2137|consen 455 GLIQRLDKAAVLDELLPILKCI 476 (700)
T ss_pred HHHHHHHHHHhHHHHHHHHHHh
Confidence 9999999999999999999876
No 30
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.93 E-value=0.012 Score=43.54 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=56.4
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
....++|.+-..+.|++.-||.++...+..+++..+ ....-+.+.+...+++..+.||..++.-+..+.+..|
T Consensus 91 ~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 91 YADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 467799999999999999999999999999999877 1122348999999999999999999999999988888
No 31
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.77 E-value=0.0055 Score=54.12 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=67.6
Q ss_pred CChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhh-hHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 8 NSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDH-LLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 8 ~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~-llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
++-.++...+++.++++.+|+++.||..+|-++.++= .++++...+. ++=+...|+.|++|.|-.+|..++..+.+-
T Consensus 119 l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly-~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 119 LRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY-RLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH-hcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 4667788889999999999999999999999998875 4567777776 888999999999999999999999988776
No 32
>KOG1242|consensus
Probab=96.74 E-value=0.004 Score=53.34 Aligned_cols=89 Identities=19% Similarity=0.223 Sum_probs=76.5
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh----hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV----DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~----~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
...++|.+++-+.++|...+...|..+..+|..+...... ..|+|-+-.-+.|..||||..++..+..+.+-+|.+
T Consensus 370 LalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 370 LALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence 5668999999999999999999999999999988433333 478889999999999999999999999999999988
Q ss_pred hHhhhHhHHHHHHH
Q psy13759 90 QDVSFKLGQVDRTS 103 (114)
Q Consensus 90 ~i~~~iLP~i~~l~ 103 (114)
.+ ...+|.+.++-
T Consensus 450 ~f-~d~~p~l~e~~ 462 (569)
T KOG1242|consen 450 SF-DDLIPELSETL 462 (569)
T ss_pred cc-cccccHHHHhh
Confidence 77 67778877654
No 33
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=96.62 E-value=0.0062 Score=40.33 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHHccccccCcch--hhhhhHHHHHHhcCCC--ChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHH
Q psy13759 26 ADPNQHVKSALASVIMGLSPILGKHN--TVDHLLPLFLSQLKDE--CPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVD 100 (114)
Q Consensus 26 ~D~s~~VR~~~a~~l~~la~~lg~e~--~~~~llP~~~~LL~D~--e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~ 100 (114)
.|..|.+|.-+|+.+..++..+|... ....+...+.+-+.|+ ....+-.|+..+..+ |++.+..-|+|.++
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l~ 90 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNLK 90 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCcC
Confidence 57899999999999999999999643 4568999999999986 444555555555444 88888888999764
No 34
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.41 E-value=0.0037 Score=54.63 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=73.5
Q ss_pred HHhhHHHHHHhcCCC-CHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh--
Q psy13759 14 VSKSIKRTQDLVADP-NQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI-- 88 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~-s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~-- 88 (114)
..+++|+++.++..+ ||.-|..--....+||..+|...-. ..++.++-.+++|...-||.-++.+++.+++..||
T Consensus 314 v~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pyg 393 (975)
T COG5181 314 VEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYG 393 (975)
T ss_pred cHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcc
Confidence 467999999999877 9999999999999999999976654 46899999999999999999999999999999875
Q ss_pred -hhHhhhHhHHHHH
Q psy13759 89 -QQDVSFKLGQVDR 101 (114)
Q Consensus 89 -~~i~~~iLP~i~~ 101 (114)
+++-+-+=|.-+.
T Consensus 394 ie~fd~vl~pLw~g 407 (975)
T COG5181 394 IEQFDEVLCPLWEG 407 (975)
T ss_pred hHHHHHHHHHHHHH
Confidence 3444444455443
No 35
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.40 E-value=0.02 Score=48.11 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=65.2
Q ss_pred CChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc--c-hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 8 NSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGK--H-NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 8 ~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~--e-~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
.++.....++.|.+...+..+++.||..++..+..+++.-+. + .....++|.+..++.|++.+|...|++.+..+++
T Consensus 69 ~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 69 LSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS 148 (503)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC
Confidence 456666888999999999999999999999998887643321 1 2335799999999999999999999999999987
Q ss_pred h
Q psy13759 85 V 85 (114)
Q Consensus 85 ~ 85 (114)
.
T Consensus 149 ~ 149 (503)
T PF10508_consen 149 H 149 (503)
T ss_pred C
Confidence 4
No 36
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.31 E-value=0.021 Score=44.57 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=35.2
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcC-CCChHHHHHHHHhHHHHHh
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK-DECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~-D~e~EVR~~a~~~l~~~~~ 84 (114)
..+|.+..++.|.++.||..++..++++. ...-+|.++++++ |+..-||..++..+.++..
T Consensus 74 ~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~ 135 (335)
T COG1413 74 EAVPLLRELLSDEDPRVRDAAADALGELG--------DPEAVPPLVELLENDENEGVRAAAARALGKLGD 135 (335)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccC--------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc
Confidence 35666666666666666666666554433 1233455555555 6666666666666665443
No 37
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.28 E-value=0.01 Score=34.72 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=27.8
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHcc
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGL 43 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~l 43 (114)
...+++|.+..+++|++.+||..++..+++|
T Consensus 25 ~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 25 YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5667999999999999999999999998864
No 38
>KOG1820|consensus
Probab=96.21 E-value=0.03 Score=50.04 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=70.1
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC----cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG----KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg----~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
.+.+.+.+-..+.+.+++.|..+..-+...-+..| ...+...++|.++...+|.+.+||.++.+.+..+.+..|.+
T Consensus 369 l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 369 LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 45577888889999999999987776666555555 45556789999999999999999999999999999999998
Q ss_pred hHhhhHhHHH
Q psy13759 90 QDVSFKLGQV 99 (114)
Q Consensus 90 ~i~~~iLP~i 99 (114)
.+...+-+.-
T Consensus 449 ~~~k~L~~~~ 458 (815)
T KOG1820|consen 449 VFKKLLKDLD 458 (815)
T ss_pred HHHHHHHhhc
Confidence 7755554443
No 39
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.11 E-value=0.043 Score=42.74 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=56.2
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhH
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFK 95 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~i 95 (114)
...+.+..+..|++|.||..++..++++. ....+|.+.+++.|+++.||..++..+.++ |.+.....+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----~~~~a~~~l 110 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGEL----GDPEAVPPL 110 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----CChhHHHHH
Confidence 36777888999999999999999977665 457899999999999999999999955544 333333445
Q ss_pred hHHHH
Q psy13759 96 LGQVD 100 (114)
Q Consensus 96 LP~i~ 100 (114)
++.+.
T Consensus 111 i~~l~ 115 (335)
T COG1413 111 VELLE 115 (335)
T ss_pred HHHHH
Confidence 55544
No 40
>KOG1241|consensus
Probab=96.06 E-value=0.019 Score=50.86 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=67.0
Q ss_pred ChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh---hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 9 SDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV---DHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 9 ~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~---~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
-.+.+..+++|+++.-.+.++||=|.+.+-.|+.+-+--.++.-+ ...+|.+++++.|+.--||-.++-.+..+++.
T Consensus 357 ~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 357 VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 456678899999999999999999999999999876433333332 35799999999999999999999999999988
Q ss_pred hCh
Q psy13759 86 IGI 88 (114)
Q Consensus 86 l~~ 88 (114)
+..
T Consensus 437 l~e 439 (859)
T KOG1241|consen 437 LPE 439 (859)
T ss_pred chh
Confidence 763
No 41
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.96 E-value=0.021 Score=47.14 Aligned_cols=58 Identities=16% Similarity=0.086 Sum_probs=43.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 18 IKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 18 lP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
.+.+..+++|.++.||.+++..++.+.. ...+|.+...++|++++||.+++..+..++
T Consensus 149 ~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 149 GPALEAALTHEDALVRAAALRALGELPR--------RLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 3455566678888888888888877662 245677778899999999999998886553
No 42
>PTZ00429 beta-adaptin; Provisional
Probab=95.87 E-value=0.075 Score=47.08 Aligned_cols=84 Identities=11% Similarity=0.014 Sum_probs=64.2
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhH-h
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQD-V 92 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i-~ 92 (114)
.--.++.+++-++|+++.||..+-..++.|. .....+.+++.+.+.+.|..|-||++|+-.+.++-+. .++.+ .
T Consensus 103 alLaINtl~KDl~d~Np~IRaLALRtLs~Ir----~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~-~pelv~~ 177 (746)
T PTZ00429 103 ALLAVNTFLQDTTNSSPVVRALAVRTMMCIR----VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD-DMQLFYQ 177 (746)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-Ccccccc
Confidence 3446888899999999999999988887755 2334567889999999999999999999999998664 33332 2
Q ss_pred hhHhHHHHHH
Q psy13759 93 SFKLGQVDRT 102 (114)
Q Consensus 93 ~~iLP~i~~l 102 (114)
..++|.+.++
T Consensus 178 ~~~~~~L~~L 187 (746)
T PTZ00429 178 QDFKKDLVEL 187 (746)
T ss_pred cchHHHHHHH
Confidence 3456666554
No 43
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=95.84 E-value=0.021 Score=31.68 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=26.7
Q ss_pred hhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 53 VDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 53 ~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
....+|.+++||++++.+||..++..+.+++
T Consensus 10 ~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 10 EAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3468999999999999999999999888776
No 44
>KOG0213|consensus
Probab=95.75 E-value=0.044 Score=48.99 Aligned_cols=89 Identities=13% Similarity=0.065 Sum_probs=73.0
Q ss_pred HHhhHHHHHHhcCCC-CHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh--
Q psy13759 14 VSKSIKRTQDLVADP-NQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI-- 88 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~-s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~-- 88 (114)
...++|+++.++..+ ||+-|..--....+||..+|-..-. ..++.++.+.++|+..-||..++..++.+++..+|
T Consensus 509 ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pyg 588 (1172)
T KOG0213|consen 509 IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYG 588 (1172)
T ss_pred cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcc
Confidence 456899999999987 9999999988889999999976554 47899999999999999999999999999998754
Q ss_pred -hhHhhhHhHHHHHH
Q psy13759 89 -QQDVSFKLGQVDRT 102 (114)
Q Consensus 89 -~~i~~~iLP~i~~l 102 (114)
+.+-+-+=|.-+..
T Consensus 589 ie~fDsVlkpLwkgi 603 (1172)
T KOG0213|consen 589 IEQFDSVLKPLWKGI 603 (1172)
T ss_pred hHHHHHHHHHHHHHH
Confidence 45544455555443
No 45
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.73 E-value=0.11 Score=37.67 Aligned_cols=88 Identities=16% Similarity=-0.002 Sum_probs=62.6
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCC--------CChHHHHHHHHhHHHHHh-
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKD--------ECPEVRLNIISNLDCVNE- 84 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D--------~e~EVR~~a~~~l~~~~~- 84 (114)
..+++..+-.+..|++++||..+...|.++....+++...+.+..++..|-+- ...+-|..+..-+-.+.+
T Consensus 61 k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 61 KGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred hhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 34455666678899999999999999999998888888888888777777763 345556666665555544
Q ss_pred hhChhhHhhhHhHHHHH
Q psy13759 85 VIGIQQDVSFKLGQVDR 101 (114)
Q Consensus 85 ~l~~~~i~~~iLP~i~~ 101 (114)
--..+.+.+++.+.+..
T Consensus 141 d~~~~~l~~kl~~~~~~ 157 (178)
T PF12717_consen 141 DKQKESLVEKLCQRFLN 157 (178)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344566666665543
No 46
>KOG2023|consensus
Probab=95.67 E-value=0.018 Score=50.63 Aligned_cols=91 Identities=16% Similarity=0.121 Sum_probs=74.7
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhc---CCCChHHHHHHHHhHHHHHhhhChhhH
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQL---KDECPEVRLNIISNLDCVNEVIGIQQD 91 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL---~D~e~EVR~~a~~~l~~~~~~l~~~~i 91 (114)
.+++|++..+..|+.+-||+..|=-+...++.+-.+...+.+.|.+..|+ -|....|..||.+++..+-+.-|.+.+
T Consensus 433 peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLV 512 (885)
T KOG2023|consen 433 PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELV 512 (885)
T ss_pred HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhH
Confidence 36899999999999999999999999999988877777777777766665 599999999999999999988888654
Q ss_pred hhhHhHHHHHHHHHH
Q psy13759 92 VSFKLGQVDRTSFLT 106 (114)
Q Consensus 92 ~~~iLP~i~~l~~~~ 106 (114)
.++=+.+++|.|-.
T Consensus 513 -p~l~~IL~~l~~af 526 (885)
T KOG2023|consen 513 -PYLEYILDQLVFAF 526 (885)
T ss_pred -HHHHHHHHHHHHHH
Confidence 45555666666643
No 47
>KOG1949|consensus
Probab=95.62 E-value=0.076 Score=47.20 Aligned_cols=93 Identities=22% Similarity=0.125 Sum_probs=70.8
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhh---hh----HHHHHHhcCCCChHHHHHHHHhHHHH----Hhh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVD---HL----LPLFLSQLKDECPEVRLNIISNLDCV----NEV 85 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~---~l----lP~~~~LL~D~e~EVR~~a~~~l~~~----~~~ 85 (114)
.=|++-+.++-+|..||..+|..|-++=+..|++.+.+ .+ .-.+..||.|+.|.||..++..+.++ =..
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 45777888899999999999999999999999887443 23 34678999999999999998877654 456
Q ss_pred hChhhHhhhHhHHH-HHHHHHHHHHh
Q psy13759 86 IGIQQDVSFKLGQV-DRTSFLTAVLV 110 (114)
Q Consensus 86 l~~~~i~~~iLP~i-~~l~~~~~~~~ 110 (114)
+++..+ ..++..+ ..++|-|.+=|
T Consensus 255 iP~~i~-~~ll~kI~d~~a~dt~s~V 279 (1005)
T KOG1949|consen 255 IPPTIL-IDLLKKITDELAFDTSSDV 279 (1005)
T ss_pred cCHHHH-HHHHHHHHHHhhhccchhe
Confidence 677655 4455544 58888776533
No 48
>KOG1243|consensus
Probab=95.32 E-value=0.014 Score=51.05 Aligned_cols=85 Identities=16% Similarity=0.130 Sum_probs=74.1
Q ss_pred hccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 5 LTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 5 ~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
..+++++...+.|.|.+.....|+|.-+|.-....+..+++.+|+.....+++.+|..+=.|+..+.|.+-.-=+.+++.
T Consensus 358 i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~ 437 (690)
T KOG1243|consen 358 IDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAP 437 (690)
T ss_pred hhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeeccccc
Confidence 45678999999999999999999999999999999999999999998888999999998888888888877777777776
Q ss_pred hhChh
Q psy13759 85 VIGIQ 89 (114)
Q Consensus 85 ~l~~~ 89 (114)
.+.+.
T Consensus 438 ~l~~~ 442 (690)
T KOG1243|consen 438 HLAAS 442 (690)
T ss_pred ccchh
Confidence 66544
No 49
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.21 E-value=0.25 Score=32.75 Aligned_cols=77 Identities=26% Similarity=0.244 Sum_probs=58.8
Q ss_pred HHHhcCCCCHHHHHHHHHHHHccccccC-cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHhHH
Q psy13759 21 TQDLVADPNQHVKSALASVIMGLSPILG-KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQ 98 (114)
Q Consensus 21 l~~L~~D~s~~VR~~~a~~l~~la~~lg-~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~ 98 (114)
.-..++|+..-||.-.-..+.++.+.-. .......++.+|.+.++|+++=|=.+|++.+..++...+.+ +...++-.
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~-vl~~L~~~ 85 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE-VLPILLDE 85 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-HHHHHHHH
Confidence 3445678888899877777777765554 44455689999999999999999999999999999998664 33444433
No 50
>KOG2032|consensus
Probab=95.21 E-value=0.13 Score=43.65 Aligned_cols=91 Identities=14% Similarity=0.099 Sum_probs=73.7
Q ss_pred HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh---hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh
Q psy13759 12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV---DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~---~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
.....++-.+.+-+.|++..+|.+++..++..+...+.+.-+ ..+.-++.+|+.|.+.||-..+++-+..+.+.+..
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 344556666677788999999999999999999875543322 35778899999999999999999999999999988
Q ss_pred hhHhhhHhHHHHHH
Q psy13759 89 QQDVSFKLGQVDRT 102 (114)
Q Consensus 89 ~~i~~~iLP~i~~l 102 (114)
..+...++|.-.++
T Consensus 334 ~~l~~~~l~ialrl 347 (533)
T KOG2032|consen 334 DDLESYLLNIALRL 347 (533)
T ss_pred cchhhhchhHHHHH
Confidence 88888888776655
No 51
>KOG1060|consensus
Probab=95.12 E-value=0.058 Score=48.18 Aligned_cols=66 Identities=21% Similarity=0.205 Sum_probs=55.8
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
++=.+++++.|+|+.||..+|-+|.++= .++++.-. .++-++-.||.|..+-|--+|+.....+|+
T Consensus 144 ~llAIk~~~~D~s~yVRk~AA~AIpKLY-sLd~e~k~-qL~e~I~~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 144 MLLAIKKAVTDPSPYVRKTAAHAIPKLY-SLDPEQKD-QLEEVIKKLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhHHHh-cCChhhHH-HHHHHHHHHhcCCCCcchhHHHHHHHHhch
Confidence 4455688999999999999999999976 44544433 899999999999999999999999888875
No 52
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.03 E-value=0.19 Score=41.05 Aligned_cols=95 Identities=18% Similarity=0.187 Sum_probs=76.3
Q ss_pred CChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhh---hhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 8 NSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVD---HLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 8 ~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~---~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
+-++.+-+.++|.+-+..++.+...|...-..+..+-+.++++.... .++|.+++-|.=++++||.++++.+..+..
T Consensus 315 LykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 315 LYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred HHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 34666778899999888888887788888888999999999888875 689999999988999999999999998887
Q ss_pred hhChhhH---hhhHhHHHHHHH
Q psy13759 85 VIGIQQD---VSFKLGQVDRTS 103 (114)
Q Consensus 85 ~l~~~~i---~~~iLP~i~~l~ 103 (114)
.- ++.+ .+.++|.+.+||
T Consensus 395 ~~-~~~i~~hl~sLI~~LL~ls 415 (415)
T PF12460_consen 395 EA-PELISEHLSSLIPRLLKLS 415 (415)
T ss_pred cC-HHHHHHHHHHHHHHHHhcC
Confidence 66 4443 346666665553
No 53
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=95.02 E-value=0.039 Score=28.65 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCC
Q psy13759 30 QHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDE 67 (114)
Q Consensus 30 ~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~ 67 (114)
|.||+.++..+++++ ...-+|.+.+.++|+
T Consensus 1 ~~vR~~aa~aLg~~~--------~~~a~~~L~~~l~d~ 30 (30)
T smart00567 1 PLVRHEAAFALGQLG--------DEEAVPALIKALEDE 30 (30)
T ss_pred CHHHHHHHHHHHHcC--------CHhHHHHHHHHhcCC
Confidence 789999999999884 234567888888874
No 54
>KOG0212|consensus
Probab=94.66 E-value=0.058 Score=46.63 Aligned_cols=87 Identities=11% Similarity=0.138 Sum_probs=65.9
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ 90 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~ 90 (114)
....++|.+-...+|..-+|||.+|+.+-++|+..-.+... +.+.-...++..|.++.||-++ +-++.+-+-+..+.
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~ 159 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTES 159 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhcccc
Confidence 56778999999999999999999999999999776655443 5778888899999999999654 44555555443221
Q ss_pred ----HhhhHhHHHH
Q psy13759 91 ----DVSFKLGQVD 100 (114)
Q Consensus 91 ----i~~~iLP~i~ 100 (114)
-.+.++|.+.
T Consensus 160 ~~tFsL~~~ipLL~ 173 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLR 173 (675)
T ss_pred ccccCHHHHHHHHH
Confidence 2566777775
No 55
>KOG0166|consensus
Probab=94.41 E-value=0.11 Score=44.29 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=59.0
Q ss_pred HHHhhHHHHHHhc-CCCCHHHHHHHHHHHHccccc---cCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 13 FVSKSIKRTQDLV-ADPNQHVKSALASVIMGLSPI---LGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 13 ~~~~ilP~l~~L~-~D~s~~VR~~~a~~l~~la~~---lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
+.+-++|.+-... .|.++.+|..+|-.+..||.. -.+......-+|+|+.|+..++.+||.-++-++.+++.
T Consensus 106 i~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIag 181 (514)
T KOG0166|consen 106 IQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAG 181 (514)
T ss_pred HHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhcccc
Confidence 4455888886655 699999999999999999953 33444556789999999999999999999998887764
No 56
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.40 E-value=0.38 Score=36.53 Aligned_cols=70 Identities=16% Similarity=0.045 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhc-CCCChHHHHHHHHhHHHHHh--hhChhhHhhhHhH
Q psy13759 26 ADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQL-KDECPEVRLNIISNLDCVNE--VIGIQQDVSFKLG 97 (114)
Q Consensus 26 ~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL-~D~e~EVR~~a~~~l~~~~~--~l~~~~i~~~iLP 97 (114)
.|.+|++.++.|..+.++|...+. ....+++.+.+.| +++.+.++..+++.+..+|+ +++.-..-..+.|
T Consensus 94 ~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~ 166 (234)
T PF12530_consen 94 KDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQK 166 (234)
T ss_pred CcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 477999999999999999999888 5568999999999 78899999999999999984 3443333333333
No 57
>KOG1851|consensus
Probab=94.28 E-value=0.24 Score=47.00 Aligned_cols=92 Identities=16% Similarity=0.085 Sum_probs=64.5
Q ss_pred hHHHHhhHHHHHH-hcCCCCHHHHHHHHHHHHcc--ccccC-cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 11 GNFVSKSIKRTQD-LVADPNQHVKSALASVIMGL--SPILG-KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 11 ~~~~~~ilP~l~~-L~~D~s~~VR~~~a~~l~~l--a~~lg-~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
.....+++-.+++ .+.+.+|+||+++-.-+.-. .+.++ .+..++++--...+++.|.+-+||..|+.-+.++-..=
T Consensus 1521 ~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s 1600 (1710)
T KOG1851|consen 1521 HHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGS 1600 (1710)
T ss_pred hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcc
Confidence 3345556666664 45567999999966654433 36667 67778899999999999999999999999999887655
Q ss_pred ChhhHhhhHhHHHHHH
Q psy13759 87 GIQQDVSFKLGQVDRT 102 (114)
Q Consensus 87 ~~~~i~~~iLP~i~~l 102 (114)
..+...++.-+....+
T Consensus 1601 ~~~~~~~k~d~~~~~~ 1616 (1710)
T KOG1851|consen 1601 KFQFVSDKRDTTSNIL 1616 (1710)
T ss_pred ccccchHhhhhhhhhh
Confidence 4433333344444333
No 58
>KOG1061|consensus
Probab=94.11 E-value=0.21 Score=44.11 Aligned_cols=77 Identities=17% Similarity=0.102 Sum_probs=63.9
Q ss_pred hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
-+.+...+.-.+.++.+|.++.||..+|.....+-..=+.-.....+++.+-.++.|+.|.|-.+|+.++..+.+.=
T Consensus 115 v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 115 VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 44556667778888999999999999999888877554444555689999999999999999999999999988754
No 59
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.84 E-value=0.5 Score=36.86 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=63.3
Q ss_pred ChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcch-----------hhhhhHHHHHHhcCCCChHHHHHHHH
Q psy13759 9 SDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHN-----------TVDHLLPLFLSQLKDECPEVRLNIIS 77 (114)
Q Consensus 9 ~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~-----------~~~~llP~~~~LL~D~e~EVR~~a~~ 77 (114)
++ ....+.++.+...++.....||..+...+.++.-..|.+. ....++..|.+.++++++++|..+++
T Consensus 58 d~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~E 136 (298)
T PF12719_consen 58 DK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVE 136 (298)
T ss_pred Ch-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44 3445556666555555599999999999999887777332 23468999999999999999999999
Q ss_pred hHHH--HHhhhCh-hhHhhhHh
Q psy13759 78 NLDC--VNEVIGI-QQDVSFKL 96 (114)
Q Consensus 78 ~l~~--~~~~l~~-~~i~~~iL 96 (114)
.+.+ ++..+.. ..+.+.++
T Consensus 137 Gl~KLlL~~~i~~~~~vL~~Ll 158 (298)
T PF12719_consen 137 GLCKLLLSGRISDPPKVLSRLL 158 (298)
T ss_pred HHHHHHhcCCCCcHHHHHHHHH
Confidence 9998 4555555 44434443
No 60
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=93.55 E-value=0.74 Score=35.73 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=60.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHccccc-cCcchhhh-hhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHh
Q psy13759 19 KRTQDLVADPNQHVKSALASVIMGLSPI-LGKHNTVD-HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKL 96 (114)
Q Consensus 19 P~l~~L~~D~s~~VR~~~a~~l~~la~~-lg~e~~~~-~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iL 96 (114)
+++..|-....+.++..+...++..+.. +.++...+ ..+|.+.++++|+.+.||..|+..+..++....-...++.-+
T Consensus 16 ~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i 95 (254)
T PF04826_consen 16 KLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYI 95 (254)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 3444445556788888888888887743 33444444 689999999999999999999999999988775554445555
Q ss_pred HHHHH
Q psy13759 97 GQVDR 101 (114)
Q Consensus 97 P~i~~ 101 (114)
|.+.+
T Consensus 96 ~~Vc~ 100 (254)
T PF04826_consen 96 PQVCE 100 (254)
T ss_pred HHHHH
Confidence 66554
No 61
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=92.95 E-value=0.57 Score=41.48 Aligned_cols=83 Identities=19% Similarity=0.270 Sum_probs=72.8
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccc---cccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLS---PILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ 90 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la---~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~ 90 (114)
.-.+.|.+.....|..+--|..++..+..++ +..|.+...-+++.++.-=.=|+.|+|-.++-+.++.|+.++|+..
T Consensus 839 vy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~ 918 (975)
T COG5181 839 VYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGA 918 (975)
T ss_pred HHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHH
Confidence 3458999999999999999999999887765 7788888888888888888889999999999999999999999987
Q ss_pred HhhhHh
Q psy13759 91 DVSFKL 96 (114)
Q Consensus 91 i~~~iL 96 (114)
+.+++-
T Consensus 919 ~m~Yv~ 924 (975)
T COG5181 919 MMKYVQ 924 (975)
T ss_pred HHHHHH
Confidence 766653
No 62
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=92.95 E-value=0.43 Score=39.48 Aligned_cols=25 Identities=0% Similarity=0.056 Sum_probs=13.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHc
Q psy13759 18 IKRTQDLVADPNQHVKSALASVIMG 42 (114)
Q Consensus 18 lP~l~~L~~D~s~~VR~~~a~~l~~ 42 (114)
+..+...+.|.+..||.++++.++.
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~ 112 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGW 112 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 3344445555555556555555554
No 63
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=92.59 E-value=0.71 Score=33.58 Aligned_cols=74 Identities=18% Similarity=0.172 Sum_probs=54.8
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVS 93 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~ 93 (114)
....|.+...++|.+.-+|.+....+...... ...+.++..+..+++|++..||.++.-.|..++.. .++.+.+
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-~~~~v~~ 192 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK-DPDEVLE 192 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT--HHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-CHHHHHH
Confidence 45778888888888877777776655544433 44568899999999999999999999999999887 4444433
No 64
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=92.58 E-value=0.2 Score=28.44 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=14.4
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHH
Q psy13759 54 DHLLPLFLSQLKDECPEVRLNIIS 77 (114)
Q Consensus 54 ~~llP~~~~LL~D~e~EVR~~a~~ 77 (114)
..+...+.+-+.|+++.||.++++
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHH
Confidence 355566666666666666666554
No 65
>KOG0915|consensus
Probab=92.53 E-value=0.64 Score=44.24 Aligned_cols=91 Identities=10% Similarity=0.055 Sum_probs=65.0
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHH---HHhcCCCChHHHHHHHHhHHHHHhhh-
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLF---LSQLKDECPEVRLNIISNLDCVNEVI- 86 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~---~~LL~D~e~EVR~~a~~~l~~~~~~l- 86 (114)
++..++|+--+-.-+.++.||||.+.|-++.++-+--+.+...+++..+. ..-+.|=---||.++-+....+++.+
T Consensus 1034 d~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1034 DEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777778889999999999999999988777777776655444 44556656678888765555444432
Q ss_pred --C-------hhhHhhhHhHHHHH
Q psy13759 87 --G-------IQQDVSFKLGQVDR 101 (114)
Q Consensus 87 --~-------~~~i~~~iLP~i~~ 101 (114)
+ ...+...+||++-.
T Consensus 1114 r~~d~~~~~~~~~~l~~iLPfLl~ 1137 (1702)
T KOG0915|consen 1114 RICDVTNGAKGKEALDIILPFLLD 1137 (1702)
T ss_pred hhcccCCcccHHHHHHHHHHHHhc
Confidence 2 23477889998753
No 66
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.48 E-value=0.35 Score=40.77 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=44.5
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
...+.|.+. -..+.+.++|.++...|..++... ++.+.+.++|+|. =.++.+|||.+|...+-..
T Consensus 479 i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~-p~~v~~~l~~i~~--n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 479 IKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRD-PRKVQEVLLPIYL--NRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHc--CCCCChHHHHHHHHHHHhc
Confidence 344555554 234567899999999999887543 4445566677762 2346889999998877654
No 67
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.46 E-value=0.6 Score=41.62 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=54.5
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
.-..++.+++-++|+|+.+|.++=..+..+ +.......+++.+.++++|+.+.||..|+-.+-++=
T Consensus 90 ~lLavNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 90 ALLAVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 334788889999999999999988877664 344555678999999999999999999998887654
No 68
>KOG1241|consensus
Probab=92.45 E-value=0.58 Score=41.82 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=73.8
Q ss_pred HHhhHHHHHHhc-C------CCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 14 VSKSIKRTQDLV-A------DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 14 ~~~ilP~l~~L~-~------D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
..+++|.+-+++ + |..|.+-.+++..++=+|+..|.++.. +++|.+.+=++-++++=|-+++-.+..+-+.-
T Consensus 317 ~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp 395 (859)
T KOG1241|consen 317 LQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGP 395 (859)
T ss_pred HhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCC
Confidence 446888886544 3 567999999999999999999998876 99999999999999999999998777665544
Q ss_pred Chhh---HhhhHhHHHHHHHHHHHHHhh
Q psy13759 87 GIQQ---DVSFKLGQVDRTSFLTAVLVK 111 (114)
Q Consensus 87 ~~~~---i~~~iLP~i~~l~~~~~~~~~ 111 (114)
.++. ++..-+|.+.++-.-..+.||
T Consensus 396 ~~~~Lt~iV~qalp~ii~lm~D~sl~Vk 423 (859)
T KOG1241|consen 396 EPDKLTPIVIQALPSIINLMSDPSLWVK 423 (859)
T ss_pred chhhhhHHHhhhhHHHHHHhcCchhhhc
Confidence 4443 455666666655544445554
No 69
>KOG4224|consensus
Probab=92.42 E-value=0.11 Score=43.39 Aligned_cols=77 Identities=21% Similarity=0.186 Sum_probs=62.4
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccc-cccCcch-hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLS-PILGKHN-TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la-~~lg~e~-~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
..+.+.-+|.+..|+-|.+-.||..+...|..++ .-..++. ....++|+++.+..|+..|||-+++..+.++++-+.
T Consensus 371 ~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 371 VIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred HHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence 3344557899999999999999999999988887 3333333 345799999999999999999999999988887654
No 70
>KOG1248|consensus
Probab=92.07 E-value=0.82 Score=42.37 Aligned_cols=87 Identities=20% Similarity=0.127 Sum_probs=77.0
Q ss_pred hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhh---hhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVD---HLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~---~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
.+.....++..+...+.-.+.++|.++-..+.-++..++.+.... .|+|-++.+++|...++|..+-.=+..++...
T Consensus 821 d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 821 DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 445667788889999999999999999999999999999888775 48999999999999999999999999999999
Q ss_pred ChhhHhhhHhH
Q psy13759 87 GIQQDVSFKLG 97 (114)
Q Consensus 87 ~~~~i~~~iLP 97 (114)
|.+.+ +.++|
T Consensus 901 g~~eL-e~~~p 910 (1176)
T KOG1248|consen 901 GAEEL-ESFLP 910 (1176)
T ss_pred CHHHH-HhhCH
Confidence 99876 56667
No 71
>KOG0213|consensus
Probab=91.94 E-value=0.94 Score=40.91 Aligned_cols=83 Identities=19% Similarity=0.264 Sum_probs=72.5
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccc---cccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLS---PILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ 90 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la---~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~ 90 (114)
.--+.|++.....|...--|..++..+..++ ..+|-+....+++.++--=.=|+.|+|-.+....+.++...+|+..
T Consensus 1034 iyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~ 1113 (1172)
T KOG0213|consen 1034 IYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQA 1113 (1172)
T ss_pred HHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHH
Confidence 3448999999999999999999999888776 6677788888888888888889999999999999999999999988
Q ss_pred HhhhHh
Q psy13759 91 DVSFKL 96 (114)
Q Consensus 91 i~~~iL 96 (114)
+.++++
T Consensus 1114 ~~~Y~~ 1119 (1172)
T KOG0213|consen 1114 MLKYCL 1119 (1172)
T ss_pred HHHHHH
Confidence 777665
No 72
>KOG1967|consensus
Probab=91.86 E-value=1.2 Score=40.67 Aligned_cols=108 Identities=17% Similarity=0.111 Sum_probs=81.1
Q ss_pred hccCChhHHHHh---hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchh--hhhhHHHHHHhcCCCC---hHHHHHHH
Q psy13759 5 LTINSDGNFVSK---SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNT--VDHLLPLFLSQLKDEC---PEVRLNII 76 (114)
Q Consensus 5 ~~~~~~~~~~~~---ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~--~~~llP~~~~LL~D~e---~EVR~~a~ 76 (114)
.++.|.+.+..+ ++|.+-+..+=++..||-+.-+.|..+--..|.=.+ .+.++|.++.+-+|+. .-||..|+
T Consensus 895 l~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~AL 974 (1030)
T KOG1967|consen 895 LTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDAL 974 (1030)
T ss_pred HhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHH
Confidence 345666655444 899999999988999998888877765544443222 2579999999999987 67999999
Q ss_pred HhHHHHHhhhCh-------hhHhhhHhHHH---HHHHHHHHHHhhc
Q psy13759 77 SNLDCVNEVIGI-------QQDVSFKLGQV---DRTSFLTAVLVKS 112 (114)
Q Consensus 77 ~~l~~~~~~l~~-------~~i~~~iLP~i---~~l~~~~~~~~~~ 112 (114)
+-+..+...++. +.+.+.|+|.+ +++..--|+=.+.
T Consensus 975 qcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 975 QCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 999999987763 35778888887 5777777765543
No 73
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=91.64 E-value=1.6 Score=32.65 Aligned_cols=90 Identities=13% Similarity=0.051 Sum_probs=67.6
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh---hhhHHHHHHhcCCCChHHHHHHHHhHHHH---Hh
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV---DHLLPLFLSQLKDECPEVRLNIISNLDCV---NE 84 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~---~~llP~~~~LL~D~e~EVR~~a~~~l~~~---~~ 84 (114)
..-..+.||.+-.-+.....--|.-+..-+.++-+.-|.+... -.+++.+-+-|+-.+++|..++++.+..+ ++
T Consensus 33 ~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 33 KLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 3345579999999888888888888888888888774444433 35666777788889999999999999999 88
Q ss_pred hhChhhH--hhhHhHHHH
Q psy13759 85 VIGIQQD--VSFKLGQVD 100 (114)
Q Consensus 85 ~l~~~~i--~~~iLP~i~ 100 (114)
.+|++.. -.+|||.+.
T Consensus 113 ~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 113 MVGEALVPYYRQLLPVLN 130 (183)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 8887632 344444443
No 74
>KOG4224|consensus
Probab=91.61 E-value=0.33 Score=40.59 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=57.6
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccc--cccCcchhhh--hhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLS--PILGKHNTVD--HLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la--~~lg~e~~~~--~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
.-.+|.+-.+++-.+..|||.++..+..|+ +.--+-.... .++|-++.|+.|.++-|+..|...+..++.
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas 280 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS 280 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc
Confidence 336899999999999999999999999988 2222333334 399999999999999999999988887765
No 75
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.55 E-value=1.4 Score=32.32 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=57.2
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
+.+.-++.+-+++.+++..||..+.+.+.-+-+ .|=-. ..+.+|.++.|..|+++.+|..|..-+..+.+--+
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~-qGLvn-P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILR-QGLVN-PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-cCCCC-hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 456677888889999999999999887776552 33211 23578999999999999999999988887766553
No 76
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=91.29 E-value=1.8 Score=30.97 Aligned_cols=69 Identities=17% Similarity=0.120 Sum_probs=51.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhH
Q psy13759 19 KRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQD 91 (114)
Q Consensus 19 P~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i 91 (114)
+.+.....|.+.-+|.+....+...... +...+.++.++..++.|++.-||.++...|..++.. .++.+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v 176 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERV 176 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHH
Confidence 6677767766666666555555443322 445678999999999999999999999999999988 45443
No 77
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=91.12 E-value=0.86 Score=44.70 Aligned_cols=88 Identities=10% Similarity=0.144 Sum_probs=69.2
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHcccccc---CcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh-
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPIL---GKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ- 90 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~l---g~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~- 90 (114)
+..+|.+-.|.+..+.++|..++..+..++..- .........+|.++.+|+..+.+||..++..|..+......++
T Consensus 608 ~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~ 687 (2102)
T PLN03200 608 NDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRK 687 (2102)
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHH
Confidence 348999999999999999999999999998522 2334556889999999999999999999999999997655543
Q ss_pred ---HhhhHhHHHHHH
Q psy13759 91 ---DVSFKLGQVDRT 102 (114)
Q Consensus 91 ---i~~~iLP~i~~l 102 (114)
+....+|.+.++
T Consensus 688 ~~~v~~GaV~pL~~L 702 (2102)
T PLN03200 688 VSYAAEDAIKPLIKL 702 (2102)
T ss_pred HHHHHcCCHHHHHHH
Confidence 223355555444
No 78
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=91.01 E-value=1.3 Score=43.47 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=65.2
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC-c-chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILG-K-HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ 90 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg-~-e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~ 90 (114)
...+|.+.+++++.+.+|+..++..+..++..-. . +......+|.++.+|++.++++|.+|+..+..+++.-..++
T Consensus 693 ~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~ 770 (2102)
T PLN03200 693 EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDD 770 (2102)
T ss_pred cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence 3488999999999999999999999999985542 2 33446789999999999999999999999999998877665
No 79
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=90.84 E-value=0.23 Score=25.42 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=19.2
Q ss_pred HHHHHHHHHHccccccCcchhhhhhHHHHHHhcCC
Q psy13759 32 VKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKD 66 (114)
Q Consensus 32 VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D 66 (114)
||++++..++++.. ..-+|.+.+.|+|
T Consensus 1 VR~~Aa~aLg~igd--------~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGD--------PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-S--------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--------HHHHHHHHHHhcC
Confidence 78999998888874 4556777766655
No 80
>KOG2062|consensus
Probab=90.55 E-value=0.46 Score=42.50 Aligned_cols=70 Identities=20% Similarity=0.165 Sum_probs=44.6
Q ss_pred hcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCC-ChHHHHHHHHhHHHHHhhhChhhHhhhHhHHH
Q psy13759 24 LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDE-CPEVRLNIISNLDCVNEVIGIQQDVSFKLGQV 99 (114)
Q Consensus 24 L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~-e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i 99 (114)
..+|.+..||+++...++-++-.- -+.+|-+++||.++ +|+||..++-.+.-.|.--|...-++-+=|..
T Consensus 563 aVsD~nDDVrRaAVialGFVl~~d------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~ 633 (929)
T KOG2062|consen 563 AVSDVNDDVRRAAVIALGFVLFRD------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLT 633 (929)
T ss_pred cccccchHHHHHHHHHheeeEecC------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhh
Confidence 456777777777777776665211 14557777777775 77777777777777776666554444444444
No 81
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=90.49 E-value=0.53 Score=25.05 Aligned_cols=29 Identities=28% Similarity=0.215 Sum_probs=20.7
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 55 HLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 55 ~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
..+|.+++|++.++++++..++..+..++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 36777777777777777777777776654
No 82
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.43 E-value=0.7 Score=25.32 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=28.3
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccc
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLS 44 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la 44 (114)
+....+|.+..++++.+..||..++..+..|+
T Consensus 9 ~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 9 VEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 34458999999999999999999999998876
No 83
>KOG1949|consensus
Probab=90.26 E-value=0.47 Score=42.38 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=59.3
Q ss_pred hhHHHHhhHHHH-HHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759 10 DGNFVSKSIKRT-QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 10 ~~~~~~~ilP~l-~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
|..+..+++.-+ ..++.|++-.||.++-+-+..++-.=..+..-+.++|.+--+|.|+..-||.|+..-+..+
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 444555555555 5799999999999999999998865556677789999999999999999999998766543
No 84
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.17 E-value=1.1 Score=31.25 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=46.1
Q ss_pred hHHHHHHhc-CCCCHHHHHHHHHHHHccccccC--cchhhh-hhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 17 SIKRTQDLV-ADPNQHVKSALASVIMGLSPILG--KHNTVD-HLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 17 ilP~l~~L~-~D~s~~VR~~~a~~l~~la~~lg--~e~~~~-~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
++-.+..++ ......+-.-+|..++++++..+ +....+ ..-..+.+|+.++++|||..|+..+.++.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 444454444 33356666677888888886665 333332 56788999999999999999999887763
No 85
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=2 Score=37.91 Aligned_cols=90 Identities=14% Similarity=0.043 Sum_probs=61.4
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh------h
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ------Q 90 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~------~ 90 (114)
+...++-|+..-++|||+..|-.++-.|.--|.... +-++-.|+.|..--||.+|+-...-+.-.-.++ .
T Consensus 587 lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a----~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~ 662 (926)
T COG5116 587 LVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVA----TDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKR 662 (926)
T ss_pred hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHH----HHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHH
Confidence 445566677777999999999999988877776654 456677899999999999887776554333332 2
Q ss_pred HhhhHhHHHH-----HHHHHHHHHh
Q psy13759 91 DVSFKLGQVD-----RTSFLTAVLV 110 (114)
Q Consensus 91 i~~~iLP~i~-----~l~~~~~~~~ 110 (114)
|.+++.-.+. .|+.+.|++-
T Consensus 663 I~k~f~~vI~~Khe~glaklGA~la 687 (926)
T COG5116 663 IIKKFNRVIVDKHESGLAKLGAVLA 687 (926)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 4444444442 3566666653
No 86
>KOG0567|consensus
Probab=90.14 E-value=0.89 Score=36.11 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=33.8
Q ss_pred HHHHHHhcCCC--CHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHH
Q psy13759 18 IKRTQDLVADP--NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD 80 (114)
Q Consensus 18 lP~l~~L~~D~--s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~ 80 (114)
+|.+..-+.|. ++-||..+|+.++.+| .+.-++.+.++++|+++-||..+.-.++
T Consensus 220 i~~L~k~L~d~~E~pMVRhEaAeALGaIa--------~e~~~~vL~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 220 IPSLIKVLLDETEHPMVRHEAAEALGAIA--------DEDCVEVLKEYLGDEERVVRESCEVALD 276 (289)
T ss_pred hHHHHHHHHhhhcchHHHHHHHHHHHhhc--------CHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45555444443 5567777777766665 3445666777777777777766665554
No 87
>KOG0166|consensus
Probab=90.05 E-value=1.4 Score=37.76 Aligned_cols=92 Identities=13% Similarity=0.024 Sum_probs=68.9
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC--cchhh-hhhHHHHHHhcCCCCh-HHHHHHHHhHHHHHhhhChh-
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILG--KHNTV-DHLLPLFLSQLKDECP-EVRLNIISNLDCVNEVIGIQ- 89 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg--~e~~~-~~llP~~~~LL~D~e~-EVR~~a~~~l~~~~~~l~~~- 89 (114)
..-+|.+..|...++.+||.=++-.++++|..=+ .+.+. ...++.++.++..+.+ -...+++-.+.++|..-.|.
T Consensus 151 agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P 230 (514)
T KOG0166|consen 151 AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP 230 (514)
T ss_pred CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence 3478999999999999999999999999883322 23333 3678888888888775 44556777888888877432
Q ss_pred --hHhhhHhHHHHHHHHHH
Q psy13759 90 --QDVSFKLGQVDRTSFLT 106 (114)
Q Consensus 90 --~i~~~iLP~i~~l~~~~ 106 (114)
..+..+||.+..|-.-+
T Consensus 231 ~~~~v~~iLp~L~~ll~~~ 249 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHST 249 (514)
T ss_pred cHHHHHHHHHHHHHHHhcC
Confidence 45678888888776644
No 88
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=89.85 E-value=1.6 Score=32.52 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=64.3
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHcc---ccccCcchhh--hhhHHHHHHhcCC-----------CChHHHHHHHH
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGL---SPILGKHNTV--DHLLPLFLSQLKD-----------ECPEVRLNIIS 77 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~l---a~~lg~e~~~--~~llP~~~~LL~D-----------~e~EVR~~a~~ 77 (114)
..++++.+++.++-++.+|..++-..+-.+ ++.+|++... ..++|.+--+.+. ....++-.+..
T Consensus 78 lPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~e 157 (183)
T PF10274_consen 78 LPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQE 157 (183)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHH
Confidence 445667778889999999999999999999 7888866554 4666666533332 34677888888
Q ss_pred hHHHHHhhhChhh--HhhhHhHHHH
Q psy13759 78 NLDCVNEVIGIQQ--DVSFKLGQVD 100 (114)
Q Consensus 78 ~l~~~~~~l~~~~--i~~~iLP~i~ 100 (114)
.+..+-..-|++. .+.+.+|+++
T Consensus 158 tL~~lE~~GG~dA~~nIKy~IPTYe 182 (183)
T PF10274_consen 158 TLELLERNGGPDAFINIKYMIPTYE 182 (183)
T ss_pred HHHHHHHhcChhHHHHHHHhCCCCC
Confidence 8888888888885 3566677654
No 89
>KOG2956|consensus
Probab=89.83 E-value=2.1 Score=36.42 Aligned_cols=85 Identities=11% Similarity=0.142 Sum_probs=62.0
Q ss_pred hhHHHHhhHHHHHHhcCCCCHHHHHHHH-HHHHccccccCcchhh---hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 10 DGNFVSKSIKRTQDLVADPNQHVKSALA-SVIMGLSPILGKHNTV---DHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a-~~l~~la~~lg~e~~~---~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
|......+.|++.. .| .=|..++ .-+.++++.+.+|.-. ..+.|.+++-.+-.+..||+.++.-|-.+.+.
T Consensus 404 P~~~I~~i~~~Ilt--~D---~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 404 PLQCIVNISPLILT--AD---EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred chhHHHHHhhHHhc--Cc---chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 33344556666655 22 2233333 3677788888887666 47899999999999999999999999999999
Q ss_pred hChhhHhhhHhHHHHHHH
Q psy13759 86 IGIQQDVSFKLGQVDRTS 103 (114)
Q Consensus 86 l~~~~i~~~iLP~i~~l~ 103 (114)
+|.+.+ .|++.+|.
T Consensus 479 vG~~~m----ePhL~~Lt 492 (516)
T KOG2956|consen 479 VGMEEM----EPHLEQLT 492 (516)
T ss_pred HhHHhh----hhHhhhcc
Confidence 997654 46666554
No 90
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=89.83 E-value=1.1 Score=37.71 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=54.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 18 IKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 18 lP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
++.+..+....+..||.-+-+.+.+++..=. .....+.+++.+++.++|++.=||.++++-+..++.
T Consensus 162 ~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 162 LSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 7888888888788899888888888873322 233334699999999999999999999999999988
No 91
>KOG1062|consensus
Probab=89.77 E-value=1.1 Score=40.17 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=63.5
Q ss_pred hhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 4 l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
||..+++|- ...+.|.+.++++.+++.||.-++-+...+-...+. ..+.++|-+.++|.|..+.|=.+.+.=+-.+|
T Consensus 131 lg~i~s~Em-ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~--l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c 207 (866)
T KOG1062|consen 131 LGNICSPEM-ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD--LVEHFVIAFRKLLCEKHHGVLIAGLHLITELC 207 (866)
T ss_pred hhccCCHHH-hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHH
Confidence 455566654 677999999999999999999888877776554443 34689999999999999999888887777777
Q ss_pred hh
Q psy13759 84 EV 85 (114)
Q Consensus 84 ~~ 85 (114)
+.
T Consensus 208 ~~ 209 (866)
T KOG1062|consen 208 KI 209 (866)
T ss_pred hc
Confidence 76
No 92
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=89.74 E-value=2.4 Score=32.88 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=51.0
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHh-cCC-CChHHHHHHHHhHHHHH
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQ-LKD-ECPEVRLNIISNLDCVN 83 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~L-L~D-~e~EVR~~a~~~l~~~~ 83 (114)
.+|.+..+..|++++||..+...+..++.........+..++...+. ..+ -+.+|..+.++-|..+.
T Consensus 55 gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt 123 (254)
T PF04826_consen 55 GISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLT 123 (254)
T ss_pred CHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccC
Confidence 89999999999999999999999999987665444444445555543 333 37789888888888775
No 93
>KOG2259|consensus
Probab=89.63 E-value=1.1 Score=39.68 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=57.2
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
..+....+..+..|...+||..+++.+..+.+ |-.. ...+-..-.++++|.+-+||++|++-+.-.++..
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL-~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~ 265 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKL-SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRC 265 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccc-cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcC
Confidence 33455558889999999999999999999998 4332 2346677889999999999999999888888877
No 94
>KOG2259|consensus
Probab=89.42 E-value=0.81 Score=40.54 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=58.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh-hHhhhHhHH
Q psy13759 20 RTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ-QDVSFKLGQ 98 (114)
Q Consensus 20 ~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~-~i~~~iLP~ 98 (114)
.+-.-+.|.-..||.++...++.++..-+. +-..-+-.++.+++|+..+||.-++..+..++..+... ...+.++-.
T Consensus 377 A~VhGlEDEf~EVR~AAV~Sl~~La~ssP~--FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~ 454 (823)
T KOG2259|consen 377 ALVHGLEDEFYEVRRAAVASLCSLATSSPG--FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILES 454 (823)
T ss_pred eeeeechHHHHHHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHH
Confidence 344567899999999999999999853332 23456788999999999999999999999999986432 223444444
Q ss_pred H
Q psy13759 99 V 99 (114)
Q Consensus 99 i 99 (114)
+
T Consensus 455 L 455 (823)
T KOG2259|consen 455 L 455 (823)
T ss_pred H
Confidence 4
No 95
>KOG2062|consensus
Probab=89.10 E-value=0.89 Score=40.74 Aligned_cols=63 Identities=17% Similarity=0.074 Sum_probs=49.9
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
....+.-|+..-|+||||.+|-.++-.|.--|.... +.++.-|.+|..--||..|+-.+.-+-
T Consensus 590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA----i~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA----INLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH----HHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 334556677788999999999999999988886554 456666788999999999987776554
No 96
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=88.56 E-value=1.8 Score=37.39 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=62.1
Q ss_pred ChhHHHHhhHHHHHHhc-CCCCHHHHHHHHHHHHccccccCcchhhhhh----HHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 9 SDGNFVSKSIKRTQDLV-ADPNQHVKSALASVIMGLSPILGKHNTVDHL----LPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 9 ~~~~~~~~ilP~l~~L~-~D~s~~VR~~~a~~l~~la~~lg~e~~~~~l----lP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
.++. ..+++-.+..+. ..+..+||-++++.+..+++.+-++...+.+ --+|-.||.|..|=|+..|+++...||
T Consensus 473 ~~~~-i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FA 551 (559)
T PF14868_consen 473 DPQL-IEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFA 551 (559)
T ss_pred ChHH-HHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 4444 344555555555 6788889999999999999888877776554 456788999999999999999999999
Q ss_pred hhhCh
Q psy13759 84 EVIGI 88 (114)
Q Consensus 84 ~~l~~ 88 (114)
+.-.-
T Consensus 552 e~T~~ 556 (559)
T PF14868_consen 552 ERTSH 556 (559)
T ss_pred ccCCc
Confidence 86543
No 97
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=88.10 E-value=2.5 Score=31.59 Aligned_cols=83 Identities=16% Similarity=0.057 Sum_probs=58.5
Q ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHh
Q psy13759 18 IKRTQDLVADP-NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKL 96 (114)
Q Consensus 18 lP~l~~L~~D~-s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iL 96 (114)
.+.+...+.|. -|..|.++...+. ..+ +.-.+.+..++..++.|++.-||+++.=.|-.+++. .++.+...|-
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~-~~~----~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~-d~~~V~~fl~ 190 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLK-YKE----KTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKT-NPDWVRDFVA 190 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH-HHH----ccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc-CHHHHHHHHH
Confidence 45566655544 5677777665443 222 222357788999999999999999999999999998 7777767776
Q ss_pred HHHHHHHHHH
Q psy13759 97 GQVDRTSFLT 106 (114)
Q Consensus 97 P~i~~l~~~~ 106 (114)
....+++.++
T Consensus 191 ~~~~~m~~~s 200 (208)
T cd07064 191 AHKLRLSPLS 200 (208)
T ss_pred HhhhhcChhH
Confidence 6665555554
No 98
>KOG1824|consensus
Probab=88.03 E-value=1.9 Score=39.78 Aligned_cols=84 Identities=14% Similarity=0.048 Sum_probs=56.6
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccc--cccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh--hhHh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLS--PILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI--QQDV 92 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la--~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~--~~i~ 92 (114)
++|-++....-.+...|..+...+.-.- +.-+-+......+.-|+.+++|++.+||..++..+..+++.=+. ..+.
T Consensus 967 LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDll 1046 (1233)
T KOG1824|consen 967 LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLL 1046 (1233)
T ss_pred HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHH
Confidence 6777777777777777776666544322 11112334445667899999999999999999999888876442 1345
Q ss_pred hhHhHHHH
Q psy13759 93 SFKLGQVD 100 (114)
Q Consensus 93 ~~iLP~i~ 100 (114)
..+||.+-
T Consensus 1047 peLLp~Ly 1054 (1233)
T KOG1824|consen 1047 PELLPLLY 1054 (1233)
T ss_pred HHHHHHHH
Confidence 66666653
No 99
>KOG1061|consensus
Probab=87.99 E-value=1.6 Score=38.82 Aligned_cols=84 Identities=15% Similarity=0.077 Sum_probs=62.2
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKL 96 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iL 96 (114)
-++.+..-+.|++|-+|..+-.-.+. ++.+...+.+.-.+.+.++|..+.||..++-...++-..=+.-...+-++
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~----l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~ 162 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGC----LRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLV 162 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceee----EeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchh
Confidence 45667778899999999988775544 45666778899999999999999999999988877655433323345566
Q ss_pred HHHHHHHH
Q psy13759 97 GQVDRTSF 104 (114)
Q Consensus 97 P~i~~l~~ 104 (114)
+.++.+.+
T Consensus 163 ~~L~~ll~ 170 (734)
T KOG1061|consen 163 DALKDLLS 170 (734)
T ss_pred HHHHHHhc
Confidence 66665554
No 100
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=87.65 E-value=0.83 Score=25.88 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.8
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHH
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASV 39 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~ 39 (114)
..+...+..-+.|+++.||.++-+.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4688999999999999999998763
No 101
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=87.12 E-value=6.6 Score=30.55 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=71.5
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHc--cccccCc-chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC--
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMG--LSPILGK-HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG-- 87 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~--la~~lg~-e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~-- 87 (114)
....++..+.....+.+..+|..+++-+.+ ++..+.. ...-+.++-.+.+=-..+..++|....-=++.++..=.
T Consensus 111 ~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~ 190 (298)
T PF12719_consen 111 DSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPEN 190 (298)
T ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHH
Confidence 455688888888888899999999999999 4566766 66666666666666666677999988888888877543
Q ss_pred hhhHhhhHhHHHHHHHHH
Q psy13759 88 IQQDVSFKLGQVDRTSFL 105 (114)
Q Consensus 88 ~~~i~~~iLP~i~~l~~~ 105 (114)
.+.+.+.++|.+..++..
T Consensus 191 Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 191 QERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 456888899999887654
No 102
>KOG0212|consensus
Probab=87.00 E-value=3.5 Score=36.06 Aligned_cols=77 Identities=18% Similarity=0.057 Sum_probs=62.1
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
..-...++|.++.=..+.++.+|..+.+-+.-+=..=+-+... .++++.+.++|.|+..|||...-.-++.|-..+.
T Consensus 162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 3446679999999999999999999999887765544444443 6899999999999999999888887777777663
No 103
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.92 E-value=1.2 Score=38.45 Aligned_cols=57 Identities=16% Similarity=0.058 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 28 PNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 28 ~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
.+..++..+|+.|...-..|+.- .+.-+-..+.||.|++..||..|+..|+.+|+--
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l--~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~ 90 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDL--QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN 90 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGG--HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T-
T ss_pred CCHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH
Confidence 46778888888888888777643 2456777888888888888888888888888753
No 104
>KOG2025|consensus
Probab=86.89 E-value=2 Score=38.52 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=62.9
Q ss_pred hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhc-CCCChHHHHHHHHhHHHHHhhhC-
Q psy13759 10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQL-KDECPEVRLNIISNLDCVNEVIG- 87 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL-~D~e~EVR~~a~~~l~~~~~~l~- 87 (114)
++..-+.+.--+..-..|+.+.||.-+.-.+..+..--+.+.. .+...|..++ +|+++|||.+++.++..=++.+|
T Consensus 120 dd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~--~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~ 197 (892)
T KOG2025|consen 120 DDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC--PVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPC 197 (892)
T ss_pred CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchh
Confidence 4455566666666677899999999999999988754333332 3555555555 57999999999999875554443
Q ss_pred ------------hhhHhhhHhHHHHHHHHH
Q psy13759 88 ------------IQQDVSFKLGQVDRTSFL 105 (114)
Q Consensus 88 ------------~~~i~~~iLP~i~~l~~~ 105 (114)
-..+-+.++|-+ .+.++
T Consensus 198 IveRarDV~~anRrlvY~r~lpki-d~r~l 226 (892)
T KOG2025|consen 198 IVERARDVSGANRRLVYERCLPKI-DLRSL 226 (892)
T ss_pred HHHHhhhhhHHHHHHHHHHhhhhh-hhhhh
Confidence 112556677776 44443
No 105
>KOG0414|consensus
Probab=86.55 E-value=0.92 Score=42.19 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=52.8
Q ss_pred ChhHHHHhhHHHH-HHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHH
Q psy13759 9 SDGNFVSKSIKRT-QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD 80 (114)
Q Consensus 9 ~~~~~~~~ilP~l-~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~ 80 (114)
+.+.+. .-+|.+ ..+-+-++++||+.+.-.+++++=.++. ..+..-+++..-|+|++++||..|+.-+.
T Consensus 954 Sa~fce-s~l~llftimeksp~p~IRsN~VvalgDlav~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvls 1023 (1251)
T KOG0414|consen 954 SAEFCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLS 1023 (1251)
T ss_pred hHHHHH-HHHHHHHHHHhcCCCceeeecchheccchhhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHH
Confidence 444444 445555 5677799999999999999999966653 33456689999999999999999986554
No 106
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=86.13 E-value=4 Score=34.56 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=33.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCC---ChHHHHHHHHhHHHHHhhhChhhHhhhHhHH
Q psy13759 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDE---CPEVRLNIISNLDCVNEVIGIQQDVSFKLGQ 98 (114)
Q Consensus 22 ~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~---e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~ 98 (114)
....+..+...|..+-..+++++. ...+|.+..++.+. ..++|.+|+.++..++... ++.+.+.++|.
T Consensus 496 ~~~~~~~~~~~~~~~LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I 566 (618)
T PF01347_consen 496 KEAVSRGDEEEKIVYLKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPI 566 (618)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHH
T ss_pred HHHhhccCHHHHHHHHHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHH
Confidence 333344444555555555555441 13445555555554 5566666666666553333 33444555555
Q ss_pred HHH
Q psy13759 99 VDR 101 (114)
Q Consensus 99 i~~ 101 (114)
+.+
T Consensus 567 ~~n 569 (618)
T PF01347_consen 567 FMN 569 (618)
T ss_dssp HH-
T ss_pred hcC
Confidence 543
No 107
>KOG1820|consensus
Probab=85.94 E-value=3.7 Score=37.05 Aligned_cols=82 Identities=12% Similarity=0.021 Sum_probs=72.0
Q ss_pred CChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 8 NSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 8 ~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
+++..+.+++-|.+.....|+.|.=|..+.+.+.++.+.-+ .+.....+....-..++|.+.-|-..++..+..++.
T Consensus 245 l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~ 324 (815)
T KOG1820|consen 245 LPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAK 324 (815)
T ss_pred CchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999885555 344445678888899999999999999999999999
Q ss_pred hhChh
Q psy13759 85 VIGIQ 89 (114)
Q Consensus 85 ~l~~~ 89 (114)
.++..
T Consensus 325 ~lr~~ 329 (815)
T KOG1820|consen 325 KLRPL 329 (815)
T ss_pred hcchh
Confidence 99865
No 108
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=85.73 E-value=1.7 Score=36.72 Aligned_cols=64 Identities=22% Similarity=0.279 Sum_probs=41.3
Q ss_pred hhHHHHHHhcCCC---CHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759 16 KSIKRTQDLVADP---NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 16 ~ilP~l~~L~~D~---s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
.++|.+...+.+. +.++|.++...+..++... ++.+.+.++|+|.+- .+.+|||.+|...+-.-
T Consensus 521 ~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n~--~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 521 ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMNT--TEDPEVRIAAYLILMRC 587 (618)
T ss_dssp GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-T--TS-HHHHHHHHHHHHHT
T ss_pred hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcCC--CCChhHHHHHHHHHHhc
Confidence 4666666666666 8999999999999885433 334444555555442 24788999998777653
No 109
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=85.21 E-value=1.7 Score=22.94 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=25.7
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccc
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLS 44 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la 44 (114)
..+|.+..+++..+++++..++..+..++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 37888888888889999999999998876
No 110
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.84 E-value=1.7 Score=38.27 Aligned_cols=64 Identities=19% Similarity=0.074 Sum_probs=52.1
Q ss_pred hcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCC-ChHHHHHHHHhHHHHHhhhChhhHhh
Q psy13759 24 LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDE-CPEVRLNIISNLDCVNEVIGIQQDVS 93 (114)
Q Consensus 24 L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~-e~EVR~~a~~~l~~~~~~l~~~~i~~ 93 (114)
..+|.+..||+++...++-+|-. .-.++|-.++||.|+ .++||...+-.+.-.|..-|...-..
T Consensus 560 avsD~nDDVrRAAViAlGfvc~~------D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~d 624 (926)
T COG5116 560 AVSDGNDDVRRAAVIALGFVCCD------DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATD 624 (926)
T ss_pred ecccCchHHHHHHHHheeeeEec------CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHH
Confidence 57899999999999998888721 126788889999986 99999999999998888887664433
No 111
>KOG1077|consensus
Probab=84.67 E-value=6.3 Score=35.48 Aligned_cols=90 Identities=12% Similarity=0.160 Sum_probs=72.0
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc-chhhhhhHHHHHHhcC-CCChHHHHHHHHhHHHHHhhhCh
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGK-HNTVDHLLPLFLSQLK-DECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~-e~~~~~llP~~~~LL~-D~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
.+....-+-.+-++.+++....||-+-+.++.+|..-.. +..+.+ .-.+++.|+ +.+.-||.-++.=+..||..=..
T Consensus 324 ~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Na 402 (938)
T KOG1077|consen 324 PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA 402 (938)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhH
Confidence 344555666677788999999999999999999955333 444445 777888888 88999999999999999999998
Q ss_pred hhHhhhHhHHHHH
Q psy13759 89 QQDVSFKLGQVDR 101 (114)
Q Consensus 89 ~~i~~~iLP~i~~ 101 (114)
.+|++.+|-++..
T Consensus 403 k~IV~elLqYL~t 415 (938)
T KOG1077|consen 403 KQIVAELLQYLET 415 (938)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888876653
No 112
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=84.43 E-value=4.5 Score=33.00 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=50.7
Q ss_pred hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHh
Q psy13759 10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISN 78 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~ 78 (114)
.+.+.++|+|-++ -..+..+-+|..+..-+..+...++++.. ..++|.+++.|++++.=|+.=|+..
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l-~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQL-LQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHH-HHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHhCCCCcchhhhhhhh
Confidence 3456778999988 45566777999999999999999887654 4699999999999999999877654
No 113
>KOG1248|consensus
Probab=84.34 E-value=11 Score=35.43 Aligned_cols=95 Identities=11% Similarity=0.094 Sum_probs=72.0
Q ss_pred hhHHHHhhHHHHHHhcCCCCHHHHHH----HHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 10 DGNFVSKSIKRTQDLVADPNQHVKSA----LASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~D~s~~VR~~----~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
++...++.++.+....--.+.|++.+ +...+.+....+ .+.+...++..+...+.-+.+|+|.+|++-+.-++..
T Consensus 779 ~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l-d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~ 857 (1176)
T KOG1248|consen 779 ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL-DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYK 857 (1176)
T ss_pred hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc
Confidence 36788899999988887888888876 333344444333 3445567889999999999999999999999999999
Q ss_pred hChhhH---hhhHhHHHHHHHHH
Q psy13759 86 IGIQQD---VSFKLGQVDRTSFL 105 (114)
Q Consensus 86 l~~~~i---~~~iLP~i~~l~~~ 105 (114)
++...+ .+.|||.+-+++.-
T Consensus 858 ~pe~~l~~~~~~LL~sll~ls~d 880 (1176)
T KOG1248|consen 858 FPEECLSPHLEELLPSLLALSHD 880 (1176)
T ss_pred CCHHHHhhhHHHHHHHHHHHHHh
Confidence 987754 44567877776654
No 114
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=83.94 E-value=14 Score=32.07 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=45.2
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhH
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNL 79 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l 79 (114)
..+.-+-.+..|+.|.+..||..+-..+..+|..-+.. ...+.-++.+||+-+++..+.++-+++
T Consensus 56 l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~--v~kvaDvL~QlL~tdd~~E~~~v~~sL 120 (556)
T PF05918_consen 56 LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEH--VSKVADVLVQLLQTDDPVELDAVKNSL 120 (556)
T ss_dssp GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T---HHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHH--HhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34556777788999999999999999999999764433 346788888999988877777776666
No 115
>KOG2160|consensus
Probab=83.82 E-value=13 Score=30.32 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=51.6
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCc--chhhh-h-hHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGK--HNTVD-H-LLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~--e~~~~-~-llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
.++.+....++++..||..+|..++..++.-++ +...+ . +-+++..|-+|..-+||..|..+++.....-.
T Consensus 125 gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 125 GLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCc
Confidence 444444499999999999999999998865553 33333 2 44455556678899999999999987766543
No 116
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=83.46 E-value=7.2 Score=31.81 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=64.3
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---------------cchhhhhhHHHHHHhcCCCChHHHHHHHHh
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG---------------KHNTVDHLLPLFLSQLKDECPEVRLNIISN 78 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---------------~e~~~~~llP~~~~LL~D~e~EVR~~a~~~ 78 (114)
..+++..+-.+..| +.+...+|+.|.-+....+ ++..-..++|.+++-.++...+.|.+....
T Consensus 269 ~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~A 346 (415)
T PF12460_consen 269 ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTA 346 (415)
T ss_pred HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHH
Confidence 44566666667777 8889999998888764421 222224589999999999999999999999
Q ss_pred HHHHHhhhChhhH---hhhHhHHHH
Q psy13759 79 LDCVNEVIGIQQD---VSFKLGQVD 100 (114)
Q Consensus 79 l~~~~~~l~~~~i---~~~iLP~i~ 100 (114)
+..+.+.++.+.+ ...++|.+.
T Consensus 347 Ls~ll~~vP~~vl~~~l~~LlPLLl 371 (415)
T PF12460_consen 347 LSHLLKNVPKSVLLPELPTLLPLLL 371 (415)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 9999999998754 356778764
No 117
>KOG2025|consensus
Probab=82.12 E-value=6.9 Score=35.23 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=58.3
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC--cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG--KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg--~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
+.+.+.++-.+-+-..-++-.||+-++..+..+....+ .|..-+.+.--+..=+.|.||-||..|+..++.+-.
T Consensus 80 ~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 80 EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG 155 (892)
T ss_pred hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc
Confidence 34555566666666777888999999999888876333 455557788888888999999999999999999884
No 118
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.11 E-value=6 Score=35.80 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=57.5
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchh-hhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNT-VDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~-~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
..+.++..+..-.+|.++-+|+-+-..+..++..=.+-.- ..++......-++|....||.++++-.+++.
T Consensus 343 ~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 343 KLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4556788888889999999999999988888855444333 3478899999999999999999998877654
No 119
>KOG2149|consensus
Probab=81.96 E-value=14 Score=30.75 Aligned_cols=99 Identities=21% Similarity=0.219 Sum_probs=73.3
Q ss_pred cchhccCChhHHHHh---hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcch---hhhhhHHHHHHhcCCCChHHHHHH
Q psy13759 2 KLLLTINSDGNFVSK---SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHN---TVDHLLPLFLSQLKDECPEVRLNI 75 (114)
Q Consensus 2 ~~l~~~~~~~~~~~~---ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~---~~~~llP~~~~LL~D~e~EVR~~a 75 (114)
|++.+. .|.....+ +++.+..+..|.+..||...-+.+..+....+++. -..-+.|++..-+.--.++||.-+
T Consensus 83 kd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi~~AMThit~~i~~ds 161 (393)
T KOG2149|consen 83 KDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYISSAMTHITPEIQEDS 161 (393)
T ss_pred HHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHHHHHHhhccHHHHHhh
Confidence 344444 45555544 66777788999999999999998888777777666 113578888888888999999999
Q ss_pred HHhHHHHHhhhChhhHh--hhHhHHHHH
Q psy13759 76 ISNLDCVNEVIGIQQDV--SFKLGQVDR 101 (114)
Q Consensus 76 ~~~l~~~~~~l~~~~i~--~~iLP~i~~ 101 (114)
+.-+.-+....++.... ..+++.+..
T Consensus 162 lkfL~~Ll~~~~p~~~~~~~~il~n~~d 189 (393)
T KOG2149|consen 162 LKFLSLLLERYPDTFSRYASKILENFKD 189 (393)
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 99999999999877432 235665543
No 120
>KOG1078|consensus
Probab=80.79 E-value=3.2 Score=37.35 Aligned_cols=80 Identities=23% Similarity=0.125 Sum_probs=57.5
Q ss_pred cchhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHH
Q psy13759 2 KLLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81 (114)
Q Consensus 2 ~~l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~ 81 (114)
++||+-.|....-+.-+-.+.+.+-=.+..||.++...+.+++ .|.+.....+.-.+...+.|.+-|||-.|.-.+..
T Consensus 452 hlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~ 529 (865)
T KOG1078|consen 452 HLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKN 529 (865)
T ss_pred HHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 3455555422222222223333444467899999999999998 77777788899999999999999999999887776
Q ss_pred HH
Q psy13759 82 VN 83 (114)
Q Consensus 82 ~~ 83 (114)
+-
T Consensus 530 l~ 531 (865)
T KOG1078|consen 530 LE 531 (865)
T ss_pred hh
Confidence 65
No 121
>KOG1517|consensus
Probab=79.21 E-value=5.7 Score=37.17 Aligned_cols=69 Identities=19% Similarity=0.146 Sum_probs=47.3
Q ss_pred hHHHHHHhcCC-CCHHHHHHHHHHHHccccccCcchhh---hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 17 SIKRTQDLVAD-PNQHVKSALASVIMGLSPILGKHNTV---DHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 17 ilP~l~~L~~D-~s~~VR~~~a~~l~~la~~lg~e~~~---~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
++..=.....| +.|-.|.=+|-.++.|=+-+...... ..----+..+|+|+.||||.+|+..+..|...
T Consensus 600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 44433344455 57999999999998865444432221 12233456788999999999999999988775
No 122
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=78.81 E-value=11 Score=26.93 Aligned_cols=76 Identities=17% Similarity=0.269 Sum_probs=55.0
Q ss_pred hHHHHhhHHHHHHhcCCCCHH-HHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 11 GNFVSKSIKRTQDLVADPNQH-VKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~-VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
+...+..+..+-+.++|+|-. -+.++.+.++.+-+.+|..... ..++|.|++.++..+...|.....++..+...+
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~iv 159 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIV 159 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 334444566666677777653 3447888888888888877644 479999999999888888888888887766554
No 123
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=78.71 E-value=31 Score=27.34 Aligned_cols=96 Identities=9% Similarity=0.057 Sum_probs=59.6
Q ss_pred cCChhHHHHhhHHHHHHhcCCCCH--HHHHHHHHHHHccccccCcchh-hhhhHHHHH-----Hhc-CCC---------C
Q psy13759 7 INSDGNFVSKSIKRTQDLVADPNQ--HVKSALASVIMGLSPILGKHNT-VDHLLPLFL-----SQL-KDE---------C 68 (114)
Q Consensus 7 ~~~~~~~~~~ilP~l~~L~~D~s~--~VR~~~a~~l~~la~~lg~e~~-~~~llP~~~-----~LL-~D~---------e 68 (114)
--+.+++...+.|.++..+.|.+. .+|.+++..++-++=.-|.+.. ...++..+- ... .|. .
T Consensus 120 g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 120 GEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred CccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCc
Confidence 345778888999999999998864 6777777766665532232221 122223322 111 122 3
Q ss_pred hHHHHHHHHhHHHHHhhhChhhH---hhhHhHHHHHH
Q psy13759 69 PEVRLNIISNLDCVNEVIGIQQD---VSFKLGQVDRT 102 (114)
Q Consensus 69 ~EVR~~a~~~l~~~~~~l~~~~i---~~~iLP~i~~l 102 (114)
+.|..+|++.-.-+...++...+ .+..+|.+.++
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~l 236 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSEL 236 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57999999999988888887443 34455665543
No 124
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=78.54 E-value=7 Score=34.61 Aligned_cols=78 Identities=8% Similarity=0.065 Sum_probs=60.7
Q ss_pred ChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh---hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 9 SDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV---DHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 9 ~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~---~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
-.+.+.+.++.++.+-.+.++|+=|.+.+-.|+.+-+-=.++.-+ ...+|.+.+++.|+.--|+...+--+..++..
T Consensus 359 ~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 359 KGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 356677778999999999999999999999998876433232222 35799999999999999988877777766665
Q ss_pred h
Q psy13759 86 I 86 (114)
Q Consensus 86 l 86 (114)
+
T Consensus 439 v 439 (858)
T COG5215 439 V 439 (858)
T ss_pred H
Confidence 4
No 125
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=78.17 E-value=7.5 Score=26.43 Aligned_cols=31 Identities=29% Similarity=0.294 Sum_probs=20.0
Q ss_pred hHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 56 LLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 56 llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
.++.+++-|.|++++|+.+|++-+.+.|..=
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 4566666666776677766666666665543
No 126
>KOG1060|consensus
Probab=77.88 E-value=16 Score=33.28 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=53.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHH----HHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhh
Q psy13759 18 IKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPL----FLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVS 93 (114)
Q Consensus 18 lP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~----~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~ 93 (114)
+..+++.+.|+|+-+|..+-..+..|- ...+.|+ +-+...|..+-||..|+..++++=.. ++++= .
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIR--------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL-d~e~k-~ 179 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIR--------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL-DPEQK-D 179 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcc--------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC-ChhhH-H
Confidence 566788999999999999988887765 2234444 45677899999999999999986553 44432 2
Q ss_pred hHhHHHHHH
Q psy13759 94 FKLGQVDRT 102 (114)
Q Consensus 94 ~iLP~i~~l 102 (114)
+++-+++.|
T Consensus 180 qL~e~I~~L 188 (968)
T KOG1060|consen 180 QLEEVIKKL 188 (968)
T ss_pred HHHHHHHHH
Confidence 455555444
No 127
>KOG1943|consensus
Probab=77.70 E-value=21 Score=33.44 Aligned_cols=87 Identities=9% Similarity=0.026 Sum_probs=60.8
Q ss_pred HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhh---hhHHHHHHhcC-CCChHHHHHHHHhHHHHHh--h
Q psy13759 12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVD---HLLPLFLSQLK-DECPEVRLNIISNLDCVNE--V 85 (114)
Q Consensus 12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~---~llP~~~~LL~-D~e~EVR~~a~~~l~~~~~--~ 85 (114)
++...++-.+-..++|+.-.||+++|.-++.++..++.+...+ +++- +.+-.. |+.|+ .+.-.+.+++. +
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid-~~~p~e~~~aWH---gacLaLAELA~rGl 412 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVID-LFNPAEDDSAWH---GACLALAELALRGL 412 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHH-hcCcCCchhHHH---HHHHHHHHHHhcCC
Confidence 4455677778888999999999999999999999999766654 2333 233333 34555 77777777665 4
Q ss_pred hChhhHhhhHhHHHHHHH
Q psy13759 86 IGIQQDVSFKLGQVDRTS 103 (114)
Q Consensus 86 l~~~~i~~~iLP~i~~l~ 103 (114)
+-+.. ...++|.+.+..
T Consensus 413 Llps~-l~dVvplI~kaL 429 (1133)
T KOG1943|consen 413 LLPSL-LEDVVPLILKAL 429 (1133)
T ss_pred cchHH-HHHHHHHHHHHh
Confidence 44543 467889886433
No 128
>KOG0567|consensus
Probab=77.42 E-value=6.8 Score=31.22 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=43.5
Q ss_pred HhhHHHHHHhcCC--CCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHH
Q psy13759 15 SKSIKRTQDLVAD--PNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81 (114)
Q Consensus 15 ~~ilP~l~~L~~D--~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~ 81 (114)
.+-+|.+..-..| ..+.||..+|+.++.+. ....+++..++.+|+..+||-.+-..+..
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~--------~~~~~~~l~k~~~dp~~~v~ETc~lAi~r 126 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--------DPESLEILTKYIKDPCKEVRETCELAIKR 126 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc--------chhhHHHHHHHhcCCccccchHHHHHHHH
Confidence 3456777665554 46799999999998876 24567888888899999999865554443
No 129
>KOG0915|consensus
Probab=77.24 E-value=12 Score=36.26 Aligned_cols=82 Identities=17% Similarity=0.129 Sum_probs=56.7
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCCh--HHHHHHHHhHHHHHhhhChhhHhhh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECP--EVRLNIISNLDCVNEVIGIQQDVSF 94 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~--EVR~~a~~~l~~~~~~l~~~~i~~~ 94 (114)
++-.+-.-++|+|..||.++|.+++.++..-.++.+.+-+--....++.+.+. -++.+.+.++.+.+.-+= ..-.+.
T Consensus 1278 ll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~L-kn~asa 1356 (1702)
T KOG0915|consen 1278 LLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEML-KNYASA 1356 (1702)
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHH-HhhHHH
Confidence 44444456779999999999999999998877777776666666667777665 566666665444443331 134577
Q ss_pred HhHHH
Q psy13759 95 KLGQV 99 (114)
Q Consensus 95 iLP~i 99 (114)
|+|.+
T Consensus 1357 ILPLi 1361 (1702)
T KOG0915|consen 1357 ILPLI 1361 (1702)
T ss_pred HHHHH
Confidence 88876
No 130
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=77.18 E-value=14 Score=29.30 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHccccccCcchh---hhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh---h---hHhhhHhHHH
Q psy13759 29 NQHVKSALASVIMGLSPILGKHNT---VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI---Q---QDVSFKLGQV 99 (114)
Q Consensus 29 s~~VR~~~a~~l~~la~~lg~e~~---~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~---~---~i~~~iLP~i 99 (114)
+..|..++-..-+=|.-.++.... .+..+|.|..+|+-++.+||.+|..+|.-+.+.... + .-.+.++-.+
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l 278 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQL 278 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHH
Confidence 356888887777777777776322 345799999999999999999999999987776642 1 1234555555
Q ss_pred HHHHH
Q psy13759 100 DRTSF 104 (114)
Q Consensus 100 ~~l~~ 104 (114)
.+|+.
T Consensus 279 ~~La~ 283 (309)
T PF05004_consen 279 RELAT 283 (309)
T ss_pred HHHHH
Confidence 55553
No 131
>KOG1991|consensus
Probab=77.12 E-value=21 Score=32.97 Aligned_cols=96 Identities=13% Similarity=0.018 Sum_probs=74.2
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccc-cccCcchhhhhhHHHHHHhcC-CCChHHHHHHHHhHHHHHhhhCh
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLS-PILGKHNTVDHLLPLFLSQLK-DECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la-~~lg~e~~~~~llP~~~~LL~-D~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
+....-+.+.+--..+++.-+.|.-+|..+..+| .-+.......+.+-...+.|. |++-=||.-|+-++..|...-..
T Consensus 457 ~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 457 SQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQ 536 (1010)
T ss_pred HHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence 3444446666666778999999999999999999 667766666778887777777 99999999999999988776642
Q ss_pred --hhHhhhHhHHHHHHHHHH
Q psy13759 89 --QQDVSFKLGQVDRTSFLT 106 (114)
Q Consensus 89 --~~i~~~iLP~i~~l~~~~ 106 (114)
+-+..++-|..++|-+|.
T Consensus 537 ~~e~~~~hvp~~mq~lL~L~ 556 (1010)
T KOG1991|consen 537 ADEKVSAHVPPIMQELLKLS 556 (1010)
T ss_pred hhhhHhhhhhHHHHHHHHHH
Confidence 337777777777776653
No 132
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=76.82 E-value=8.8 Score=34.80 Aligned_cols=68 Identities=15% Similarity=0.300 Sum_probs=57.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHccccccCcch--------hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 19 KRTQDLVADPNQHVKSALASVIMGLSPILGKHN--------TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 19 P~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~--------~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
..+..|+...|.-.|+++.+.++++...+-++. ..+.++..+.+=+.|..|=+|..|+..+.+++..-
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~ 377 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN 377 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc
Confidence 445668899999999999999999998877665 33468889999999999999999999999998754
No 133
>KOG0414|consensus
Probab=76.60 E-value=13 Score=35.04 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=61.5
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccc-cCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPI-LGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~-lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
.....+..+..=..|.+..||+-+-+.+..|++. .-+.....+++-...+=+.|.+.-||.+|++=+..+-...+
T Consensus 356 ~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 356 LRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 3345777888888999999999999999999843 33455567899999999999999999999998887765543
No 134
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=76.42 E-value=13 Score=29.98 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=48.1
Q ss_pred hHHHHhhHHHHHHhc----------CCCCHHHHHHHHHHHHccccccCcchh--hhhhHHHHHHhcCCCC--hHHHHHHH
Q psy13759 11 GNFVSKSIKRTQDLV----------ADPNQHVKSALASVIMGLSPILGKHNT--VDHLLPLFLSQLKDEC--PEVRLNII 76 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~----------~D~s~~VR~~~a~~l~~la~~lg~e~~--~~~llP~~~~LL~D~e--~EVR~~a~ 76 (114)
+....+++|.+-.++ .|..|..|..+|..+..+|..+|.... ...+.-.+.+-+-|+. ....-.|+
T Consensus 253 e~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi 332 (343)
T cd08050 253 EPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAI 332 (343)
T ss_pred HHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHH
Confidence 444555777775433 478899999999999999999997643 3456666666666643 22355555
Q ss_pred HhHHHHH
Q psy13759 77 SNLDCVN 83 (114)
Q Consensus 77 ~~l~~~~ 83 (114)
..+..++
T Consensus 333 ~GL~~lG 339 (343)
T cd08050 333 VGLSALG 339 (343)
T ss_pred HHHHHhC
Confidence 5554443
No 135
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=76.32 E-value=18 Score=23.30 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=48.6
Q ss_pred CChhHHHHhhHHHHHHh-cCCCCHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHH
Q psy13759 8 NSDGNFVSKSIKRTQDL-VADPNQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIIS 77 (114)
Q Consensus 8 ~~~~~~~~~ilP~l~~L-~~D~s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~ 77 (114)
++...+...++-.+..+ .+-++..||..+-+.+..+.+.-|..... ..++-++..-.+|++.++-..|..
T Consensus 9 l~~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~ 81 (86)
T PF09324_consen 9 LSNFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQ 81 (86)
T ss_pred ccccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHH
Confidence 45555666666555554 66678899999999999999888866644 367777777778765555444433
No 136
>KOG4524|consensus
Probab=75.48 E-value=9.5 Score=35.14 Aligned_cols=74 Identities=24% Similarity=0.291 Sum_probs=55.3
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHcccccc--CcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPIL--GKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~l--g~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
.+..+|.+..+.+..+|+||.++++-+..+-..- .-....-+++-..+.|-+|+.++.+....+.+.-+.+-+.
T Consensus 276 L~~~~~~~~~~~~~~~~~v~~aL~d~~~~Ll~~C~~sL~~c~~~llesll~L~ndEn~ki~~~~~~~l~~~~eq~~ 351 (1014)
T KOG4524|consen 276 LNIALKAIIPLRKHNNESVREALADFVSILLTRCENSLNNCEKHLLESLVHLENDENPKLPSHCVKLLEVLNEQLH 351 (1014)
T ss_pred HHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Confidence 3445666666779999999999998777664221 1223334789999999999999999999998887766554
No 137
>KOG1077|consensus
Probab=75.22 E-value=7.7 Score=34.97 Aligned_cols=82 Identities=13% Similarity=-0.028 Sum_probs=67.7
Q ss_pred cCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHHHHHH
Q psy13759 25 VADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTSF 104 (114)
Q Consensus 25 ~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~~l~~ 104 (114)
+.|...-||...|-++..+=+..+.-.-...-..-++.||+|.+-.|-.++++=+..+++..+++ -..-+.|++.+|+.
T Consensus 157 S~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~-yk~~~~~avs~L~r 235 (938)
T KOG1077|consen 157 SGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES-YKTCLPLAVSRLSR 235 (938)
T ss_pred CCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH-HhhhHHHHHHHHHH
Confidence 45788899999999999888776555555567788999999999999999999999999998775 45678899998888
Q ss_pred HHH
Q psy13759 105 LTA 107 (114)
Q Consensus 105 ~~~ 107 (114)
...
T Consensus 236 iv~ 238 (938)
T KOG1077|consen 236 IVV 238 (938)
T ss_pred HHh
Confidence 654
No 138
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=75.10 E-value=13 Score=33.13 Aligned_cols=93 Identities=13% Similarity=0.107 Sum_probs=61.7
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhc-CCCChHHHHHHHHhHHHHHhhhC--
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQL-KDECPEVRLNIISNLDCVNEVIG-- 87 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL-~D~e~EVR~~a~~~l~~~~~~l~-- 87 (114)
+...+.++--+..-.=|+..-||..+...+..+.+.-|.+... +..++..++ +|++.|||.+++.++..=....|
T Consensus 127 e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~--~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~I 204 (885)
T COG5218 127 EVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR--IVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCI 204 (885)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH--HHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhH
Confidence 3344445555555566999999999999999998776654432 233444333 68999999999998864333322
Q ss_pred -----------hhhHhhhHhHHHHHHHHH
Q psy13759 88 -----------IQQDVSFKLGQVDRTSFL 105 (114)
Q Consensus 88 -----------~~~i~~~iLP~i~~l~~~ 105 (114)
-..+-+.+||.+-.+.|+
T Consensus 205 lERarDv~~anRr~vY~r~Lp~iGd~~~l 233 (885)
T COG5218 205 LERARDVSGANRRMVYERCLPRIGDLKSL 233 (885)
T ss_pred HHHhhhhhHHHHHHHHHHHhhhhcchhhc
Confidence 123567788887666554
No 139
>KOG2933|consensus
Probab=75.03 E-value=29 Score=28.28 Aligned_cols=83 Identities=13% Similarity=0.031 Sum_probs=63.0
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhc---CCCChHHHHHHHHhHHHHHhhhChhhHhh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQL---KDECPEVRLNIISNLDCVNEVIGIQQDVS 93 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL---~D~e~EVR~~a~~~l~~~~~~l~~~~i~~ 93 (114)
++..+-+-++...-.|=.+++..+.+|...++..... .+=.+...|+ .+...-||..+-..|..+.+...|.-+.+
T Consensus 130 vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~ 208 (334)
T KOG2933|consen 130 VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLR 208 (334)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHH
Confidence 5555555666777777778888888888888877665 3334444444 34567899999999999999999999999
Q ss_pred hHhHHHH
Q psy13759 94 FKLGQVD 100 (114)
Q Consensus 94 ~iLP~i~ 100 (114)
+|+|+.+
T Consensus 209 ~L~~~~~ 215 (334)
T KOG2933|consen 209 KLIPILQ 215 (334)
T ss_pred HHHHHHh
Confidence 9999976
No 140
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=74.97 E-value=26 Score=31.32 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=61.1
Q ss_pred HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc--chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~--e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
.+...++-.+-+-..-+.-.||+-.++.+.-+...+|+ |..-+.++--+.+=+=|.|+-||..|+..+..+-+.-+
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 34444555555566677889999999999999999987 66667787778888889999999999999999987654
No 141
>KOG2081|consensus
Probab=74.78 E-value=7.8 Score=33.57 Aligned_cols=70 Identities=10% Similarity=0.137 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcC-CCChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHHHH
Q psy13759 28 PNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK-DECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRT 102 (114)
Q Consensus 28 ~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~-D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~~l 102 (114)
.-.+-|+.+++.+.+++-.+|.+.+-+. .+..+.. .+.||.-.+++.-+..+++.+.++. +.++|.+.++
T Consensus 364 ~f~~fR~~v~dvl~Dv~~iigs~e~lk~---~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e--~~i~pevl~~ 434 (559)
T KOG2081|consen 364 EFFEFRLKVGDVLKDVAFIIGSDECLKQ---MYIRLKENNASWEEVEAALFILRAVAKNVSPEE--NTIMPEVLKL 434 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHH---HHHHHccCCCchHHHHHHHHHHHHHhccCCccc--cchHHHHHHH
Confidence 3458999999999999999998877544 3444444 6799999999999999999998874 3455555444
No 142
>KOG0392|consensus
Probab=74.55 E-value=6.8 Score=37.27 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=56.0
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhh-----------------------------------------
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVD----------------------------------------- 54 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~----------------------------------------- 54 (114)
..+|.+-.+.......||+++|..++.++..-..|.-..
T Consensus 816 ~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~ 895 (1549)
T KOG0392|consen 816 SLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNP 895 (1549)
T ss_pred hhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccce
Confidence 467777788888899999999998888664433221110
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759 55 HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 55 ~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
-++|.++..+.|..-.||.++.+.+..+-+.++-+
T Consensus 896 Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le 930 (1549)
T KOG0392|consen 896 LLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLE 930 (1549)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcccccc
Confidence 07888899999999999999999999888887643
No 143
>KOG4413|consensus
Probab=74.32 E-value=10 Score=31.55 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=60.6
Q ss_pred hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcch-------hhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759 10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHN-------TVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~-------~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
+-....+++|-++.-+..++..|+.-.+..++.+-+--..+. +..+++|.++.....++-||-.++++++..+
T Consensus 76 gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikri 155 (524)
T KOG4413|consen 76 GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRI 155 (524)
T ss_pred chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 444566788889988888999999999998888765544222 2356899999999999999999999999987
Q ss_pred Hhh
Q psy13759 83 NEV 85 (114)
Q Consensus 83 ~~~ 85 (114)
+-.
T Consensus 156 alf 158 (524)
T KOG4413|consen 156 ALF 158 (524)
T ss_pred Hhc
Confidence 653
No 144
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=74.03 E-value=7.7 Score=34.41 Aligned_cols=84 Identities=19% Similarity=0.103 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh------hhChh------hHhhhH
Q psy13759 28 PNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE------VIGIQ------QDVSFK 95 (114)
Q Consensus 28 ~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~------~l~~~------~i~~~i 95 (114)
.+..||.++..++.++|=....-...+.+...+-..++|.+-|||--|.-.+..+-. .+..+ .....+
T Consensus 499 EN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da~~pl~~sd~~~dipsle~~l 578 (898)
T COG5240 499 ENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDACEPLFSSDELGDIPSLELEL 578 (898)
T ss_pred hhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhhhhccccccccCCcchhHHhh
Confidence 467899999999999886666666667888899999999999999988877765431 11111 234455
Q ss_pred hHHHHHHHHHHHHHhh
Q psy13759 96 LGQVDRTSFLTAVLVK 111 (114)
Q Consensus 96 LP~i~~l~~~~~~~~~ 111 (114)
+..+.+=+|-||+=|+
T Consensus 579 ~~yIse~sf~t~fdvn 594 (898)
T COG5240 579 IGYISEDSFATAFDVN 594 (898)
T ss_pred heeecccccccccccc
Confidence 5555555666665443
No 145
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=73.51 E-value=33 Score=27.02 Aligned_cols=94 Identities=19% Similarity=0.111 Sum_probs=65.9
Q ss_pred CChhHHHHhhHHHHHH-hcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 8 NSDGNFVSKSIKRTQD-LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 8 ~~~~~~~~~ilP~l~~-L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
+|+....+.++..+-. +.++.+..+..+....|..=+..+ .....+.++..|.+=++|..+-||..-+..+.......
T Consensus 14 l~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~ 92 (339)
T PF12074_consen 14 LPSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWES 92 (339)
T ss_pred CCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhc
Confidence 3443345555555543 556789999999999888877777 44445789999999999998889999999888877611
Q ss_pred ---ChhhHhhhHhHHHHHH
Q psy13759 87 ---GIQQDVSFKLGQVDRT 102 (114)
Q Consensus 87 ---~~~~i~~~iLP~i~~l 102 (114)
+...+.+.++|.+.++
T Consensus 93 ~~~~~~~~~~~~~~~L~~~ 111 (339)
T PF12074_consen 93 PNSDSLKFAEPFLPKLLQS 111 (339)
T ss_pred cCchHHHHHHHHHHHHHHH
Confidence 1223445566666544
No 146
>KOG1062|consensus
Probab=72.98 E-value=9.6 Score=34.50 Aligned_cols=76 Identities=14% Similarity=0.034 Sum_probs=54.0
Q ss_pred hcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHHHH
Q psy13759 24 LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRT 102 (114)
Q Consensus 24 L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~~l 102 (114)
+-+|=+..=-+.++-+++-++...++|.. ..+.|.+.+||+-..+-||+.|+.-...|-.-.+. .+++++|.+.++
T Consensus 112 lknDL~s~nq~vVglAL~alg~i~s~Ema-rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~--l~e~f~~~~~~l 187 (866)
T KOG1062|consen 112 LKNDLNSSNQYVVGLALCALGNICSPEMA-RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD--LVEHFVIAFRKL 187 (866)
T ss_pred HHhhccCCCeeehHHHHHHhhccCCHHHh-HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--HHHHhhHHHHHH
Confidence 33344444445566666677766677765 57899999999999999999999888887766543 446666666543
No 147
>KOG1517|consensus
Probab=72.56 E-value=11 Score=35.36 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=46.9
Q ss_pred HHhcCCCCHHHHHHHHHHHHcccccc----C--------------cchhhhhhHH----HHHHhcCCCChHHHHHHHHhH
Q psy13759 22 QDLVADPNQHVKSALASVIMGLSPIL----G--------------KHNTVDHLLP----LFLSQLKDECPEVRLNIISNL 79 (114)
Q Consensus 22 ~~L~~D~s~~VR~~~a~~l~~la~~l----g--------------~e~~~~~llP----~~~~LL~D~e~EVR~~a~~~l 79 (114)
..+.+|+.++||.++.-+++-+-... . ++.+.++.++ .++.+++|..+-||...+-.+
T Consensus 648 ~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~l 727 (1387)
T KOG1517|consen 648 ILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVAL 727 (1387)
T ss_pred HHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHH
Confidence 44778999999999999888765432 1 1122445555 788999999999999988888
Q ss_pred HHHHh
Q psy13759 80 DCVNE 84 (114)
Q Consensus 80 ~~~~~ 84 (114)
..++-
T Consensus 728 s~~~~ 732 (1387)
T KOG1517|consen 728 SHFVV 732 (1387)
T ss_pred HHHHH
Confidence 76654
No 148
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=72.53 E-value=5.8 Score=33.23 Aligned_cols=53 Identities=15% Similarity=0.089 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcccccc--Ccchhhh-hhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759 30 QHVKSALASVIMGLSPIL--GKHNTVD-HLLPLFLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 30 ~~VR~~~a~~l~~la~~l--g~e~~~~-~llP~~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
+.+=.-+|..++++++.. |+....+ ..=..+.+|++++++|||..|+..+.++
T Consensus 368 ~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 368 PIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred cceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 344466777888888775 5655554 4667799999999999999999988876
No 149
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=72.43 E-value=33 Score=24.55 Aligned_cols=94 Identities=10% Similarity=0.064 Sum_probs=60.7
Q ss_pred hhHHHHhhHHHHHH-hcCCCCHHHHHHHHHHHHccccccC---c---------------------------------chh
Q psy13759 10 DGNFVSKSIKRTQD-LVADPNQHVKSALASVIMGLSPILG---K---------------------------------HNT 52 (114)
Q Consensus 10 ~~~~~~~ilP~l~~-L~~D~s~~VR~~~a~~l~~la~~lg---~---------------------------------e~~ 52 (114)
|-...-++++.+.+ +-++.+|.+|..+-..++-|+..-+ + |..
T Consensus 4 PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y 83 (160)
T PF11865_consen 4 PYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYY 83 (160)
T ss_pred hHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHH
Confidence 44445567777755 4457889999999998888763322 1 111
Q ss_pred hhhhHHHHHHhcCCC-ChHHHHHHHHhHHHHHhhhChhh--HhhhHhHHHHHHH
Q psy13759 53 VDHLLPLFLSQLKDE-CPEVRLNIISNLDCVNEVIGIQQ--DVSFKLGQVDRTS 103 (114)
Q Consensus 53 ~~~llP~~~~LL~D~-e~EVR~~a~~~l~~~~~~l~~~~--i~~~iLP~i~~l~ 103 (114)
....+..+.+.|+|+ -..=+.+++..+-.+.+.+|... ...+++|.+.+..
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i 137 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVI 137 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHH
Confidence 112455677788885 44455678888888887777653 4667777776543
No 150
>KOG2149|consensus
Probab=72.16 E-value=19 Score=29.94 Aligned_cols=82 Identities=13% Similarity=0.055 Sum_probs=62.7
Q ss_pred cCCCCHHHHHHHHHHHHccccccCcchh--hhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh------------
Q psy13759 25 VADPNQHVKSALASVIMGLSPILGKHNT--VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ------------ 90 (114)
Q Consensus 25 ~~D~s~~VR~~~a~~l~~la~~lg~e~~--~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~------------ 90 (114)
.+.-|..||..+-..+.++-..-+.+.. ...+++....+.-|.+..||.+...-+..+...+.++.
T Consensus 67 lkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi 146 (393)
T KOG2149|consen 67 LKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYI 146 (393)
T ss_pred hcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHH
Confidence 4577889999999888887766443333 34789999999999999999999999998777776554
Q ss_pred --HhhhHhHHHHHHHHHH
Q psy13759 91 --DVSFKLGQVDRTSFLT 106 (114)
Q Consensus 91 --i~~~iLP~i~~l~~~~ 106 (114)
.++++.|.++.-|+..
T Consensus 147 ~~AMThit~~i~~dslkf 164 (393)
T KOG2149|consen 147 SSAMTHITPEIQEDSLKF 164 (393)
T ss_pred HHHHhhccHHHHHhhHHH
Confidence 4567777776555443
No 151
>KOG0168|consensus
Probab=71.73 E-value=7 Score=35.81 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=56.0
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccc--cCcchhh-----hhhHHHHHHhcCCC-ChHHHHHHHHhHHHHHhhh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPI--LGKHNTV-----DHLLPLFLSQLKDE-CPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~--lg~e~~~-----~~llP~~~~LL~D~-e~EVR~~a~~~l~~~~~~l 86 (114)
+++|.-++.-. |++.++ +.+.++|+. +|.|.+. +.++|.+++||+++ .+|.-..|+..+..+++++
T Consensus 170 kkLL~gL~~~~-Des~Ql-----eal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl 243 (1051)
T KOG0168|consen 170 KKLLQGLQAES-DESQQL-----EALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVL 243 (1051)
T ss_pred HHHHHhccccC-ChHHHH-----HHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc
Confidence 33444443332 776665 455566654 4555554 57999999999996 8999999999999999999
Q ss_pred Chhh---HhhhHhHHHH
Q psy13759 87 GIQQ---DVSFKLGQVD 100 (114)
Q Consensus 87 ~~~~---i~~~iLP~i~ 100 (114)
+... +-.+-+|++.
T Consensus 244 P~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 244 PRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred cchhheeecccchHHHH
Confidence 8663 3334667764
No 152
>PF01816 LRV: Leucine rich repeat variant; InterPro: IPR004830 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This signature describes a leucine-rich repeat variant (LRV), which has a novel repetitive structural motif consisting of alternating alpha- and 3(10)-helices arranged in a right-handed superhelix, with the absence of the beta-sheets present in other LRRs [].; PDB: 1LRV_A.
Probab=69.86 E-value=4 Score=21.01 Aligned_cols=10 Identities=30% Similarity=0.312 Sum_probs=8.1
Q ss_pred HHHHHHHHHH
Q psy13759 30 QHVKSALASV 39 (114)
Q Consensus 30 ~~VR~~~a~~ 39 (114)
|+||.++|.+
T Consensus 1 ~~VR~avA~~ 10 (26)
T PF01816_consen 1 WEVRAAVARR 10 (26)
T ss_dssp HHHHHHHHHH
T ss_pred CHHHHHHHHc
Confidence 7888888876
No 153
>KOG1059|consensus
Probab=69.24 E-value=25 Score=31.82 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=32.6
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
..++-+-+-.|.+.+-+.||.-+.-.+-.+.-..+.. ..--.|-+.+-|.|++|.|..+|++-+++++.-
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA--lr~~FprL~EkLeDpDp~V~SAAV~VICELArK 211 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA--LRPCFPRLVEKLEDPDPSVVSAAVSVICELARK 211 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh--HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhh
Confidence 3344444444555555555555444444444333221 122334444455555555555555555555543
No 154
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=68.35 E-value=9.1 Score=29.74 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=35.7
Q ss_pred ccCcchhhh---hhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh
Q psy13759 46 ILGKHNTVD---HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ 90 (114)
Q Consensus 46 ~lg~e~~~~---~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~ 90 (114)
..+.....+ -++|.++.++.|.++++|...+.-+..+.+.++...
T Consensus 107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~ 154 (282)
T PF10521_consen 107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE 154 (282)
T ss_pred cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 444444443 479999999999999999999999999988776544
No 155
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=68.04 E-value=24 Score=29.55 Aligned_cols=88 Identities=11% Similarity=0.086 Sum_probs=62.1
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHcccccc-C-cchhh-hhhHHHHHHhcCCCChHH--HHHHHHhHHHHHhhhChh--
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPIL-G-KHNTV-DHLLPLFLSQLKDECPEV--RLNIISNLDCVNEVIGIQ-- 89 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~l-g-~e~~~-~~llP~~~~LL~D~e~EV--R~~a~~~l~~~~~~l~~~-- 89 (114)
-+|.+.+++.+++..||.-+.=.++++|.-- | .+... ...+..+++++.-+-.++ -.++.=.++++|.-=.|.
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~ 237 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPD 237 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCc
Confidence 5899999999999999999999999988211 1 12222 346677888888776644 345666778888765433
Q ss_pred -hHhhhHhHHHHHHHH
Q psy13759 90 -QDVSFKLGQVDRTSF 104 (114)
Q Consensus 90 -~i~~~iLP~i~~l~~ 104 (114)
..+.+-+|.+.+|-.
T Consensus 238 w~~isqalpiL~KLiy 253 (526)
T COG5064 238 WSNISQALPILAKLIY 253 (526)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 456677888877754
No 156
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=67.53 E-value=33 Score=30.57 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=72.4
Q ss_pred HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCC--ChHHHHHHHHhHHHHHhhhC
Q psy13759 12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDE--CPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~--e~EVR~~a~~~l~~~~~~l~ 87 (114)
.....++|++.+..+-....|-..+..-++++++.+|.+.-. +.+...+.+.++.+ ..+++-++++-+..++-.+|
T Consensus 635 ~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaig 714 (858)
T COG5215 635 QYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIG 714 (858)
T ss_pred HHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHh
Confidence 345669999988888888899999999999999999976543 56777777777775 66889999999999999999
Q ss_pred hhh--HhhhHhHHHHHHHH
Q psy13759 88 IQQ--DVSFKLGQVDRTSF 104 (114)
Q Consensus 88 ~~~--i~~~iLP~i~~l~~ 104 (114)
.+- -.+.|.-.+++.+.
T Consensus 715 a~F~~YL~~im~L~qqas~ 733 (858)
T COG5215 715 ANFESYLDMIMMLFQQASE 733 (858)
T ss_pred hhHHHHHHHHHHHHHHHhc
Confidence 752 34555555555554
No 157
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=67.18 E-value=9.7 Score=31.86 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=48.0
Q ss_pred HhhHHHHHHhc-CCCCHHHHHHHHHHHHccccccCc---chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 15 SKSIKRTQDLV-ADPNQHVKSALASVIMGLSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 15 ~~ilP~l~~L~-~D~s~~VR~~~a~~l~~la~~lg~---e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
.-++|-+-.+. +....-....+|=.+.++|.--.. -.....-+|.|++||.|.+.+||-.++=.+.+++.
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAG 186 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAG 186 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccC
Confidence 33566666555 333334455777788888743332 22224689999999999999999999888876653
No 158
>KOG1837|consensus
Probab=67.04 E-value=14 Score=35.68 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=53.0
Q ss_pred hcCCCCHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh
Q psy13759 24 LVADPNQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 24 L~~D~s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
-..|.+.++|+++-..+..+...+|..... ..++|.+.+|+.|++-+|-..+..-+..+=+.+|.
T Consensus 1549 ~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1549 KTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred HhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch
Confidence 344788899999999999999999877655 58999999999999999988887766666566665
No 159
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=64.92 E-value=18 Score=30.58 Aligned_cols=60 Identities=22% Similarity=0.292 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHccccccCcchhhh-hhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 28 PNQHVKSALASVIMGLSPILGKHNTVD-HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 28 ~s~~VR~~~a~~l~~la~~lg~e~~~~-~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
.+-..|..+=+.++.|++..+.-...+ .++..+..=|.++.+|||.++-+.+..++....
T Consensus 386 ~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 386 EDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred ccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 467899999999999998888755343 566666666699999999999999999888774
No 160
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=64.89 E-value=33 Score=26.46 Aligned_cols=67 Identities=13% Similarity=-0.025 Sum_probs=43.4
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
.++|.+....++.+...|.++.-.... ...++.....+++++-.++.|.|.-||.++.-.|..+++.
T Consensus 118 ~li~~~~a~~~~~~~w~rraaiv~~l~---~~k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~ 184 (222)
T COG4912 118 DLIEEWAADAEEDNRWERRAAIVHQLV---YKKKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKH 184 (222)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHH---HhcCccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHhh
Confidence 455666444444444444433322211 2233333447999999999999999999999999988883
No 161
>KOG1824|consensus
Probab=64.79 E-value=55 Score=30.74 Aligned_cols=84 Identities=11% Similarity=0.111 Sum_probs=59.2
Q ss_pred hccCChhHHHHhhHHHHHHhcCCC-CHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhc---CCCChHHHHHHHHh
Q psy13759 5 LTINSDGNFVSKSIKRTQDLVADP-NQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQL---KDECPEVRLNIISN 78 (114)
Q Consensus 5 ~~~~~~~~~~~~ilP~l~~L~~D~-s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL---~D~e~EVR~~a~~~ 78 (114)
...++.+.+..-+--.++.|.+-. ...+|.. -..+..+|..-|.+... ..++|.+.+.+ +-+.-|.|...++.
T Consensus 202 a~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~-Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQa 280 (1233)
T KOG1824|consen 202 ASSCNRDLYVELIEHLLKGLSNRTQMSATRTY-IQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQA 280 (1233)
T ss_pred HHhcCHHHHHHHHHHHHhccCCCCchHHHHHH-HHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHH
Confidence 344555555555555556677644 4466654 35677777777765444 57999999999 66778999999999
Q ss_pred HHHHHhhhChh
Q psy13759 79 LDCVNEVIGIQ 89 (114)
Q Consensus 79 l~~~~~~l~~~ 89 (114)
+..|...-+.+
T Consensus 281 le~fl~rcp~e 291 (1233)
T KOG1824|consen 281 LESFLRRCPKE 291 (1233)
T ss_pred HHHHHHhChhh
Confidence 99998887765
No 162
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.24 E-value=27 Score=28.84 Aligned_cols=61 Identities=18% Similarity=0.135 Sum_probs=37.3
Q ss_pred HHHhcCCCCHHHHHHHHHHHHccccccC-cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHH
Q psy13759 21 TQDLVADPNQHVKSALASVIMGLSPILG-KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81 (114)
Q Consensus 21 l~~L~~D~s~~VR~~~a~~l~~la~~lg-~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~ 81 (114)
+..+.++.+.-=|..+|..++-..-.-+ .....+.+-+.+.-|+.|.+++||..++..|..
T Consensus 12 ~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~ 73 (364)
T COG5330 12 LIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQ 73 (364)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHh
Confidence 4455666666666555554444332222 233445677778888888888888877777763
No 163
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=64.10 E-value=50 Score=30.22 Aligned_cols=92 Identities=9% Similarity=-0.055 Sum_probs=73.1
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC-hhhHhh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG-IQQDVS 93 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~-~~~i~~ 93 (114)
..++|.+.-..+++.--.|+-+|+.+..+.+-+.......++.....+.++|+.--||..|+-++..+-..-. .+.+.+
T Consensus 459 ~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sa 538 (970)
T COG5656 459 YFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSA 538 (970)
T ss_pred HHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHh
Confidence 3366666667788888999999999999977777777677888888999999999999999999988766553 335777
Q ss_pred hHhHHHHHHHHHH
Q psy13759 94 FKLGQVDRTSFLT 106 (114)
Q Consensus 94 ~iLP~i~~l~~~~ 106 (114)
++-|..++|-+|.
T Consensus 539 hVp~tmekLLsLS 551 (970)
T COG5656 539 HVPETMEKLLSLS 551 (970)
T ss_pred hhhHHHHHHHHhc
Confidence 8888888887764
No 164
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=63.88 E-value=32 Score=25.98 Aligned_cols=78 Identities=6% Similarity=-0.014 Sum_probs=50.3
Q ss_pred chhccCChhHHHHhhHHHHHHhc-CCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHH
Q psy13759 3 LLLTINSDGNFVSKSIKRTQDLV-ADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81 (114)
Q Consensus 3 ~l~~~~~~~~~~~~ilP~l~~L~-~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~ 81 (114)
.+++..|. ...++++.+...+ ++.+..++...-+.+..+|+.---| +.+...-+.++=+-+-|-.++..+..
T Consensus 110 ~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd-----~~s~w~vl~~~l~~~~rp~v~~~l~~ 182 (234)
T PF12530_consen 110 DICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD-----FYSAWKVLQKKLSLDYRPLVLKSLCS 182 (234)
T ss_pred HHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc-----HHHHHHHHHHhcCCccchHHHHHHHH
Confidence 34444444 5667899999988 8999999999999999999333333 33333333333355556666666666
Q ss_pred HHhhhC
Q psy13759 82 VNEVIG 87 (114)
Q Consensus 82 ~~~~l~ 87 (114)
++..++
T Consensus 183 l~~l~~ 188 (234)
T PF12530_consen 183 LFALVP 188 (234)
T ss_pred HHHHhc
Confidence 665554
No 165
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=63.76 E-value=34 Score=28.87 Aligned_cols=84 Identities=11% Similarity=0.058 Sum_probs=49.0
Q ss_pred HHhhHHHHHH----hcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759 14 VSKSIKRTQD----LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 14 ~~~ilP~l~~----L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
..+++|.+.. ..++.+...+...-..+++++ -..+...+.|++.+ -.+.+..+|.+|+.++..+++.. ++
T Consensus 440 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g----~~~~i~~l~~~l~~-~~~~~~~iR~~Av~Alr~~a~~~-p~ 513 (574)
T smart00638 440 LEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG----HPSSIKVLEPYLEG-AEPLSTFIRLAAILALRNLAKRD-PR 513 (574)
T ss_pred HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC----ChhHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHhC-ch
Confidence 3455555543 333444555555555565544 22233334444330 12347889999999999887744 44
Q ss_pred hHhhhHhHHHHHHH
Q psy13759 90 QDVSFKLGQVDRTS 103 (114)
Q Consensus 90 ~i~~~iLP~i~~l~ 103 (114)
.+.+.++|.+.+-.
T Consensus 514 ~v~~~l~~i~~n~~ 527 (574)
T smart00638 514 KVQEVLLPIYLNRA 527 (574)
T ss_pred HHHHHHHHHHcCCC
Confidence 66788889886543
No 166
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=63.68 E-value=51 Score=23.50 Aligned_cols=77 Identities=17% Similarity=0.105 Sum_probs=61.0
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhh---hhHHHHHHhcCCC-ChHHHHHHHHhHHHHHhhh
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVD---HLLPLFLSQLKDE-CPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~---~llP~~~~LL~D~-e~EVR~~a~~~l~~~~~~l 86 (114)
....+++.--+.++.++++++-|++-+.-+..+++.=|.|...+ ..+..+++.++.+ .+-++..++..+..+...+
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 44566778888999999999999988888888887777776643 4677777777774 5677899999999998888
Q ss_pred C
Q psy13759 87 G 87 (114)
Q Consensus 87 ~ 87 (114)
+
T Consensus 100 ~ 100 (165)
T PF08167_consen 100 R 100 (165)
T ss_pred c
Confidence 5
No 167
>KOG2274|consensus
Probab=63.52 E-value=46 Score=30.82 Aligned_cols=81 Identities=15% Similarity=0.020 Sum_probs=63.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh---hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh--hHhh
Q psy13759 19 KRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV---DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ--QDVS 93 (114)
Q Consensus 19 P~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~---~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~--~i~~ 93 (114)
-.++.+..|..+-||.++++.+...| +.+... ..++-.+.+|..+.+.||=-..++.++-+++.=... ...+
T Consensus 494 ~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~s 570 (1005)
T KOG2274|consen 494 ATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMES 570 (1005)
T ss_pred HHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhc
Confidence 34567888999999999999999998 333333 357778899999999999999999999888876533 4567
Q ss_pred hHhHHHHHH
Q psy13759 94 FKLGQVDRT 102 (114)
Q Consensus 94 ~iLP~i~~l 102 (114)
+|.|.+..+
T Consensus 571 kI~P~~i~l 579 (1005)
T KOG2274|consen 571 KICPLTINL 579 (1005)
T ss_pred chhHHHHHH
Confidence 788877654
No 168
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=62.78 E-value=9.9 Score=28.18 Aligned_cols=55 Identities=25% Similarity=0.237 Sum_probs=34.4
Q ss_pred HHHHHHHHHHccccccCcch---------------hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 32 VKSALASVIMGLSPILGKHN---------------TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 32 VR~~~a~~l~~la~~lg~e~---------------~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
||.++-..+..+++..++.. ....--+++.-+++|+++-||.+|++.+..+-+..
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs 71 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS 71 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc
Confidence 56666666666665522111 11223456677888888888888888887766543
No 169
>KOG4653|consensus
Probab=61.61 E-value=62 Score=29.90 Aligned_cols=73 Identities=19% Similarity=0.179 Sum_probs=54.4
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHh-cCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQ-LKDECPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~L-L~D~e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
.++-.+-.-..|+..+-|.+-..+++.+|+... .+ ..-+.+..++++ -.|.++-||.+|+.-+...-.-.|.+
T Consensus 847 ~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d 923 (982)
T KOG4653|consen 847 VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGED 923 (982)
T ss_pred HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchh
Confidence 355556667779999999999999999996654 44 333444444444 45889999999999999888888854
No 170
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=59.80 E-value=23 Score=29.56 Aligned_cols=64 Identities=17% Similarity=0.061 Sum_probs=56.4
Q ss_pred cCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh
Q psy13759 25 VADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 25 ~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
..|.-+|-|.++|..++.++..++.+.....+-|.+...|+....-=|..++--+.+.+.....
T Consensus 96 ~~d~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~ 159 (441)
T PF12054_consen 96 GMDVVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKE 159 (441)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCcc
Confidence 3366799999999999999999988777777778999999999999999999999999988763
No 171
>KOG1993|consensus
Probab=59.72 E-value=55 Score=30.10 Aligned_cols=86 Identities=15% Similarity=0.062 Sum_probs=61.2
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCC-ChHHHHHHHHhHHHHHhhhChh
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDE-CPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~-e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
..+.+.++|.+. -..+.+--.|+-+|-.+++=...--++.++..+--.|++|++|+ +.-||.+++..+.-+.+=-.-
T Consensus 483 ~Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF- 560 (978)
T KOG1993|consen 483 KWLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNF- 560 (978)
T ss_pred HHHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccC-
Confidence 345556777777 34455666799999988887765556777777788899999998 899999999988876553321
Q ss_pred hHhhhHhHHH
Q psy13759 90 QDVSFKLGQV 99 (114)
Q Consensus 90 ~i~~~iLP~i 99 (114)
-.+.++|++
T Consensus 561 -~~dsFlp~l 569 (978)
T KOG1993|consen 561 -SEDSFLPYL 569 (978)
T ss_pred -ChhhhhhhH
Confidence 134455655
No 172
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=59.67 E-value=59 Score=22.93 Aligned_cols=77 Identities=6% Similarity=0.038 Sum_probs=57.5
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHcc---c-cccCcchhhhhhHHHHHHhcCC-CChHHHHHHHHhHHHHHhhhC
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGL---S-PILGKHNTVDHLLPLFLSQLKD-ECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~l---a-~~lg~e~~~~~llP~~~~LL~D-~e~EVR~~a~~~l~~~~~~l~ 87 (114)
-..+.+-.++.-++.++++|=..+-..+.-+ | ..+..+.+...++..+.+++++ ..++||.-+..-+..-+....
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 3445666777667778888766443333333 3 3566788889999999999999 799999999999999888886
Q ss_pred hh
Q psy13759 88 IQ 89 (114)
Q Consensus 88 ~~ 89 (114)
.+
T Consensus 114 ~~ 115 (144)
T cd03568 114 ND 115 (144)
T ss_pred CC
Confidence 43
No 173
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=58.61 E-value=64 Score=22.98 Aligned_cols=79 Identities=13% Similarity=0.069 Sum_probs=47.4
Q ss_pred hhccCChhHHHHhhHHHHHH----hcCCCCHHHHHHHHHHHHccccccCc------chhh---hhhHHHHHHhcCCCChH
Q psy13759 4 LLTINSDGNFVSKSIKRTQD----LVADPNQHVKSALASVIMGLSPILGK------HNTV---DHLLPLFLSQLKDECPE 70 (114)
Q Consensus 4 l~~~~~~~~~~~~ilP~l~~----L~~D~s~~VR~~~a~~l~~la~~lg~------e~~~---~~llP~~~~LL~D~e~E 70 (114)
+...++++.+.++--+.++. +-++....++.++...+..|....+. |.+. ..+++.++++++| .+
T Consensus 52 ~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~ 129 (165)
T PF08167_consen 52 TVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SS 129 (165)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cc
Confidence 34445666666664444433 33466778899988888887755553 2211 2477888888887 44
Q ss_pred HHHHHHHhHHHHHh
Q psy13759 71 VRLNIISNLDCVNE 84 (114)
Q Consensus 71 VR~~a~~~l~~~~~ 84 (114)
+...++..+..+.+
T Consensus 130 ~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 130 CPETALDALATLLP 143 (165)
T ss_pred cHHHHHHHHHHHHH
Confidence 44455555544444
No 174
>KOG0168|consensus
Probab=58.46 E-value=64 Score=29.91 Aligned_cols=93 Identities=14% Similarity=0.184 Sum_probs=69.2
Q ss_pred HHhhHHHHHHhcCCC-CHHHHHHHHHHHHccccccCcchhh---hhhHHHHHHhcCC-CChHHHHHHHHhHHHHHhhhCh
Q psy13759 14 VSKSIKRTQDLVADP-NQHVKSALASVIMGLSPILGKHNTV---DHLLPLFLSQLKD-ECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~-s~~VR~~~a~~l~~la~~lg~e~~~---~~llP~~~~LL~D-~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
.+.++|.+-.|++|. +...=.-+|.++..+|+.++..... .+.+|+|++-|.- +.-+|-..+++.+.++...=+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 456899998888876 7888889999999999999975543 4689999876665 7889999999999988887766
Q ss_pred hhH-hhhHhHHHHHHHHHH
Q psy13759 89 QQD-VSFKLGQVDRTSFLT 106 (114)
Q Consensus 89 ~~i-~~~iLP~i~~l~~~~ 106 (114)
..+ ...|.-++..|=|++
T Consensus 289 AiL~AG~l~a~LsylDFFS 307 (1051)
T KOG0168|consen 289 AILQAGALSAVLSYLDFFS 307 (1051)
T ss_pred HHHhcccHHHHHHHHHHHH
Confidence 543 223334444444443
No 175
>KOG2032|consensus
Probab=57.58 E-value=41 Score=29.04 Aligned_cols=78 Identities=12% Similarity=0.111 Sum_probs=59.6
Q ss_pred hhHHHHh----hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHH---HHHhcCCCChHHHHHHHHhHHHH
Q psy13759 10 DGNFVSK----SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPL---FLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 10 ~~~~~~~----ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~---~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
|....++ +--.+..|..|.+..|=..+-..+..+.+..........++|+ ..++.+|+..++|.++..-+..+
T Consensus 290 P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L 369 (533)
T KOG2032|consen 290 PDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGAL 369 (533)
T ss_pred cHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHH
Confidence 4444554 5556678899889888887777777777766666667777776 45678999999999999988888
Q ss_pred HhhhC
Q psy13759 83 NEVIG 87 (114)
Q Consensus 83 ~~~l~ 87 (114)
++.-|
T Consensus 370 ~~l~g 374 (533)
T KOG2032|consen 370 AKLAG 374 (533)
T ss_pred HHHcC
Confidence 88876
No 176
>KOG4653|consensus
Probab=57.34 E-value=32 Score=31.69 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 30 QHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 30 ~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
..-|.-++++|+++++..|+=..+ .-++..|+.-.+|++.+-|.....++..+|....
T Consensus 820 ~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 820 TDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred ccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 567888899999999999975444 5789999999999999999999999999998774
No 177
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=57.14 E-value=11 Score=32.56 Aligned_cols=47 Identities=9% Similarity=-0.091 Sum_probs=38.3
Q ss_pred chhccCChhHHHHhhHHHH----HHhcCCCCHHHHHHHHHHHHccccccCc
Q psy13759 3 LLLTINSDGNFVSKSIKRT----QDLVADPNQHVKSALASVIMGLSPILGK 49 (114)
Q Consensus 3 ~l~~~~~~~~~~~~ilP~l----~~L~~D~s~~VR~~~a~~l~~la~~lg~ 49 (114)
-+|+..-|+...+.++|.+ ..|..|++|-|+.-+-+.|+.+|+.-.-
T Consensus 506 ~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~~ 556 (559)
T PF14868_consen 506 SLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTSH 556 (559)
T ss_pred HhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCCc
Confidence 4677777777777788876 4588899999999999999999976543
No 178
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=56.40 E-value=45 Score=25.84 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=45.1
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHHHHHH
Q psy13759 54 DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTSF 104 (114)
Q Consensus 54 ~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~~l~~ 104 (114)
...+|.++.-|..+.+.|+.-+++.+...++.-|++.+.+++.+....|-+
T Consensus 207 ~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 207 PFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999888888888776644
No 179
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=55.64 E-value=26 Score=27.35 Aligned_cols=66 Identities=15% Similarity=0.124 Sum_probs=41.4
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCC----CChHHHHHHHHhHHHHH
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKD----ECPEVRLNIISNLDCVN 83 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D----~e~EVR~~a~~~l~~~~ 83 (114)
.-|+++ +.+-+.+-++..++..+..+...-+..... +++++.|++.+++ ++.+++..++..+..+.
T Consensus 107 ~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL 178 (312)
T PF03224_consen 107 YSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL 178 (312)
T ss_dssp HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence 556666 666669999999999999988666654444 4677888887776 45556666666665554
No 180
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=54.92 E-value=69 Score=22.24 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=44.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHccccccCcc-hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759 19 KRTQDLVADPNQHVKSALASVIMGLSPILGKH-NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 19 P~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e-~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
|.+.+..+|..|-.-...=+ +||+..-.+ ....++.-.+.+=|+|..+.|+.-++.-|..+|..-+++
T Consensus 4 ~ll~~ATsdd~~p~pgy~~~---Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~ 72 (122)
T cd03572 4 SLLSKATSDDDEPTPGYLYE---EIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD 72 (122)
T ss_pred HHHHHHhcCCCCCCchHHHH---HHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH
Confidence 45666666666655444433 444333222 334578888888889988999888888888888775543
No 181
>KOG1059|consensus
Probab=54.54 E-value=57 Score=29.65 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=58.2
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHhHHH
Q psy13759 20 RTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQV 99 (114)
Q Consensus 20 ~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i 99 (114)
=+..++.|..+..||--.-.+..|++.-++.. +.--.++++.|.|.+.-+|.-|+.=+.++.+-=..-.|++.++-++
T Consensus 303 KLr~fiedsDqNLKYlgLlam~KI~ktHp~~V--qa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~ 380 (877)
T KOG1059|consen 303 KLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV--QAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHV 380 (877)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH--HHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 34568899999999999999999887665543 3455778999999999999999988877766444444555554444
No 182
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=53.92 E-value=7.2 Score=26.69 Aligned_cols=28 Identities=21% Similarity=0.067 Sum_probs=20.0
Q ss_pred HHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 58 PLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 58 P~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
..++.|++++++.||..|+..+-.+.+.
T Consensus 50 ~aLl~LL~hpn~~VRl~AA~~~L~~~p~ 77 (106)
T PF09450_consen 50 DALLPLLKHPNMQVRLWAAAHTLRYAPE 77 (106)
T ss_dssp GGGGGGGGSS-HHHHHHHHHTTTTT-HH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHhCHH
Confidence 3467789999999999998877665543
No 183
>KOG1967|consensus
Probab=53.89 E-value=54 Score=30.47 Aligned_cols=93 Identities=14% Similarity=0.078 Sum_probs=66.8
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh---hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV---DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~---~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
+-+-..+.|.+.+...-.--.+|...-..+..+-..++++... ..++|.+++-|.=++.+||.....-++.+...-+
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 4455668888887777444456666666666666677766555 3699999999999999999999999887776655
Q ss_pred hh--hHhhhHhHHHHHHH
Q psy13759 88 IQ--QDVSFKLGQVDRTS 103 (114)
Q Consensus 88 ~~--~i~~~iLP~i~~l~ 103 (114)
+= .-...++|.+..|+
T Consensus 942 tL~t~~~~Tlvp~lLsls 959 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLS 959 (1030)
T ss_pred ccchHHHhHHHHHHHhcC
Confidence 32 23466778776664
No 184
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=53.20 E-value=71 Score=21.86 Aligned_cols=77 Identities=14% Similarity=0.081 Sum_probs=58.9
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccc----cCcchhhhhhHHHHHHhcCC---CChHHHHHHHHhHHHHHhh
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPI----LGKHNTVDHLLPLFLSQLKD---ECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~----lg~e~~~~~llP~~~~LL~D---~e~EVR~~a~~~l~~~~~~ 85 (114)
-..+.+-.++.-.+.++++|...+-..+..+... |..+....+++-.+.+++.+ ..++||.-++.-+...+..
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455777788888889999998776666555544 44566666788889999987 4889999999999999888
Q ss_pred hChh
Q psy13759 86 IGIQ 89 (114)
Q Consensus 86 l~~~ 89 (114)
.+.+
T Consensus 114 f~~~ 117 (133)
T cd03561 114 FGGH 117 (133)
T ss_pred hcCC
Confidence 8754
No 185
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=52.11 E-value=24 Score=24.93 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=41.9
Q ss_pred ccCChhHHHHhhHHHHHHhcCC-CCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhc
Q psy13759 6 TINSDGNFVSKSIKRTQDLVAD-PNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQL 64 (114)
Q Consensus 6 ~~~~~~~~~~~ilP~l~~L~~D-~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL 64 (114)
+.+..+....+++..+..++++ ....||..+.+.+.+-+..++.+.....+--.|-.|-
T Consensus 70 ~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~ 129 (144)
T cd03568 70 KRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDLYKKLK 129 (144)
T ss_pred HHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 3334455566678888888888 8899999999999999988886654444444444443
No 186
>KOG2160|consensus
Probab=51.96 E-value=1.1e+02 Score=25.04 Aligned_cols=64 Identities=13% Similarity=-0.029 Sum_probs=48.5
Q ss_pred CCCCHHHHHHHHHHHHccccccCcch--hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759 26 ADPNQHVKSALASVIMGLSPILGKHN--TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 26 ~D~s~~VR~~~a~~l~~la~~lg~e~--~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
+-.+.+=|..+=+.+.++++.+...+ ..-..++.++.++++.+++||..|+.-+...++.-+..
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~ 158 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS 158 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH
Confidence 44556667777788888888776433 33456777777999999999999999999888877543
No 187
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=51.79 E-value=67 Score=28.73 Aligned_cols=70 Identities=11% Similarity=0.020 Sum_probs=54.0
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC-c-chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILG-K-HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg-~-e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
..+++.+..+.+..+..+...+...+..++-.-. + +.....++|-+.++++-+..+++..++.-+.+++.
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf 360 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF 360 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc
Confidence 3477888787888889999999999998883322 2 34445799999999998888888888887776654
No 188
>KOG2973|consensus
Probab=51.56 E-value=86 Score=25.73 Aligned_cols=49 Identities=24% Similarity=0.307 Sum_probs=38.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHccccccCcchhh---hhhHHHHHHhcCCCCh
Q psy13759 20 RTQDLVADPNQHVKSALASVIMGLSPILGKHNTV---DHLLPLFLSQLKDECP 69 (114)
Q Consensus 20 ~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~---~~llP~~~~LL~D~e~ 69 (114)
.+-.+..|.|+.||.++.+++..+... |-.... ...++-+.+|++|..+
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~ 58 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP 58 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc
Confidence 355688999999999999999888755 432222 4689999999999876
No 189
>KOG2549|consensus
Probab=51.26 E-value=81 Score=27.59 Aligned_cols=87 Identities=10% Similarity=0.101 Sum_probs=61.4
Q ss_pred HHHHhhHHHHHH------h----cCCCCHHHHHHHHHHHHccccccCc--chhhhhhHHHHHHhcCCCC--hHHHHHHHH
Q psy13759 12 NFVSKSIKRTQD------L----VADPNQHVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDEC--PEVRLNIIS 77 (114)
Q Consensus 12 ~~~~~ilP~l~~------L----~~D~s~~VR~~~a~~l~~la~~lg~--e~~~~~llP~~~~LL~D~e--~EVR~~a~~ 77 (114)
....+++|.+-. + ..|..|-+|--+|.-+..+|..+|. ......++..+.+-+.|+. +--.-.++.
T Consensus 284 pYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~ 363 (576)
T KOG2549|consen 284 PYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIA 363 (576)
T ss_pred hHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHH
Confidence 345567777743 2 3488999999999999999999995 3344578899999999973 334555555
Q ss_pred hHHHHHhhhChhhHhhhHhHHHHHH
Q psy13759 78 NLDCVNEVIGIQQDVSFKLGQVDRT 102 (114)
Q Consensus 78 ~l~~~~~~l~~~~i~~~iLP~i~~l 102 (114)
.+..++ .+.+..-|+|-++..
T Consensus 364 gL~~lg----~~~I~~~ilp~L~~~ 384 (576)
T KOG2549|consen 364 GLSELG----HEVIRTVILPNLKEY 384 (576)
T ss_pred HHHHhh----hhhhhheeccchHHH
Confidence 554443 356677788877644
No 190
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=50.83 E-value=25 Score=28.14 Aligned_cols=96 Identities=11% Similarity=0.012 Sum_probs=56.4
Q ss_pred ChhHHHHhhHHHHHHhc-------CCCCH-HHHHHHHH--HHHccccccCcchhhhhhHHHHHHhcCCC--ChHHHHHHH
Q psy13759 9 SDGNFVSKSIKRTQDLV-------ADPNQ-HVKSALAS--VIMGLSPILGKHNTVDHLLPLFLSQLKDE--CPEVRLNII 76 (114)
Q Consensus 9 ~~~~~~~~ilP~l~~L~-------~D~s~-~VR~~~a~--~l~~la~~lg~e~~~~~llP~~~~LL~D~--e~EVR~~a~ 76 (114)
.|......++..+.-|+ .|.+| ..|..+++ .|.+--..+.++......+.-+-.+++|+ .++.=..+.
T Consensus 114 ~PP~~V~~V~~aV~iLl~~~~~~~k~~~W~~ak~~l~~~~~Fl~~L~~fd~~~i~~~~~~~l~~~~~~p~F~~e~v~~~S 193 (344)
T PF12777_consen 114 NPPEAVKLVMEAVCILLGPKGKLPKDTSWESAKKLLSDSDNFLQRLKNFDKDNIPEATIKKLKKYLKNPDFNPEKVRKAS 193 (344)
T ss_dssp S--HHHHHHHHHHHHHTT-S-SEE---HHHHHHCHHCSSTTHHHHHHHS-GGG--HHHHHHHHCTTTSTTSSHHHHHHH-
T ss_pred CCcHHHHHHHHHHhhHHhccccccccccHHHHHHHHHhHHHHHHHHHhhccccccHHHHHHHHHHhcCCCCCHHHHHHHh
Confidence 45555777888887777 47889 56666653 34443455667777777788888899887 455555566
Q ss_pred HhHHHHHhhhChh----hHhhhHhHHHHHHHH
Q psy13759 77 SNLDCVNEVIGIQ----QDVSFKLGQVDRTSF 104 (114)
Q Consensus 77 ~~l~~~~~~l~~~----~i~~~iLP~i~~l~~ 104 (114)
.....+|.|+-.- .+...+-|.-.++..
T Consensus 194 ~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~ 225 (344)
T PF12777_consen 194 KAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEE 225 (344)
T ss_dssp TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 7777888887432 244555566555543
No 191
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=49.92 E-value=83 Score=21.67 Aligned_cols=79 Identities=13% Similarity=0.147 Sum_probs=58.3
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHH---HHHccc-cccCcchhhhhhHHHHHHhcCCCCh--H--HHHHHHHhHHHH
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALAS---VIMGLS-PILGKHNTVDHLLPLFLSQLKDECP--E--VRLNIISNLDCV 82 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~---~l~~la-~~lg~e~~~~~llP~~~~LL~D~e~--E--VR~~a~~~l~~~ 82 (114)
..-..+.+..+++-++.++++|-..+-. .+.+=| ..|..+.....++..+.+++++... + ||..++.-+...
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 3445667778888788899999886644 444444 5666788888899999998887532 2 999999999998
Q ss_pred HhhhChh
Q psy13759 83 NEVIGIQ 89 (114)
Q Consensus 83 ~~~l~~~ 89 (114)
+...+.+
T Consensus 117 ~~~f~~~ 123 (140)
T PF00790_consen 117 AEAFKSD 123 (140)
T ss_dssp HHHTTTS
T ss_pred HHHHCCC
Confidence 8888543
No 192
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=49.83 E-value=14 Score=27.33 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=21.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHcc
Q psy13759 18 IKRTQDLVADPNQHVKSALASVIMGL 43 (114)
Q Consensus 18 lP~l~~L~~D~s~~VR~~~a~~l~~l 43 (114)
-+++.-+..|++.+||.+++..+..+
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~l 67 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAAL 67 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHH
Confidence 35567788999999999999877664
No 193
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=47.68 E-value=9.9 Score=26.03 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=19.6
Q ss_pred HHHhcCCCCHHHHHHHHHHHHccccc
Q psy13759 21 TQDLVADPNQHVKSALASVIMGLSPI 46 (114)
Q Consensus 21 l~~L~~D~s~~VR~~~a~~l~~la~~ 46 (114)
+..|.+|++..||.++|.....+++.
T Consensus 52 Ll~LL~hpn~~VRl~AA~~~L~~~p~ 77 (106)
T PF09450_consen 52 LLPLLKHPNMQVRLWAAAHTLRYAPE 77 (106)
T ss_dssp GGGGGGSS-HHHHHHHHHTTTTT-HH
T ss_pred HHHHHcCCChhHHHHHHHHHHHhCHH
Confidence 44588999999999999988776643
No 194
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=47.44 E-value=91 Score=21.42 Aligned_cols=91 Identities=12% Similarity=0.116 Sum_probs=61.5
Q ss_pred HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccc----cccCcchhhhhhHHHHHHhcCCC--ChHHHHHHHHhHHHHHhh
Q psy13759 12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLS----PILGKHNTVDHLLPLFLSQLKDE--CPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la----~~lg~e~~~~~llP~~~~LL~D~--e~EVR~~a~~~l~~~~~~ 85 (114)
....+.+-.++.-.+.++++|=..+-..+..+. ..|..+.....++..+.+++++. .++||..++.-+..-+..
T Consensus 33 ~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 334556777777777788777665544444333 45667888889999999999995 345999999999988888
Q ss_pred hChhhHhhhHhHHHHHH
Q psy13759 86 IGIQQDVSFKLGQVDRT 102 (114)
Q Consensus 86 l~~~~i~~~iLP~i~~l 102 (114)
+..+.=...+-..++.|
T Consensus 113 f~~~~~~~~i~~~y~~L 129 (133)
T smart00288 113 FKNDPDLSQIVDVYDLL 129 (133)
T ss_pred HcCCCCchHHHHHHHHH
Confidence 85332233444444443
No 195
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=47.09 E-value=83 Score=20.88 Aligned_cols=74 Identities=8% Similarity=0.098 Sum_probs=45.3
Q ss_pred hHHHHhhHHHHHHhcC-CCCHHHHHHHHHHHHccccccC-cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 11 GNFVSKSIKRTQDLVA-DPNQHVKSALASVIMGLSPILG-KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~-D~s~~VR~~~a~~l~~la~~lg-~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
|.....++|.+....+ -++...|.+.=-.+..++...+ .+.+.+.++-.+.+-...... ...++.-+..+++.=
T Consensus 1 E~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 1 EDILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred CcHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 3467789999988777 8888999888888888886665 333334444444444444433 233333344444433
No 196
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=46.24 E-value=69 Score=25.76 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=58.1
Q ss_pred hccCChhHHHHhhHHHHHHhcCCC-CHHHH--HHHHHHHHccc------cccCcchhhhhhHHHHHHhc----------C
Q psy13759 5 LTINSDGNFVSKSIKRTQDLVADP-NQHVK--SALASVIMGLS------PILGKHNTVDHLLPLFLSQL----------K 65 (114)
Q Consensus 5 ~~~~~~~~~~~~ilP~l~~L~~D~-s~~VR--~~~a~~l~~la------~~lg~e~~~~~llP~~~~LL----------~ 65 (114)
+..+..+.-...++|.+.....+. .-+++ ...-..++.++ +.+--+...-.|+|.++..+ .
T Consensus 199 L~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~ 278 (343)
T cd08050 199 LQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPD 278 (343)
T ss_pred HHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCC
Confidence 334555566677888886655433 11221 22222233333 23334444456889888777 5
Q ss_pred CCChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHHH
Q psy13759 66 DECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDR 101 (114)
Q Consensus 66 D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~~ 101 (114)
|+.+..|--++.-+..+|+..+... ..+.|.+.+
T Consensus 279 ~~h~~LRd~AA~ll~~i~~~f~~~y--~~l~~ri~~ 312 (343)
T cd08050 279 DNHWALRDYAARLLAQICRKFSTSY--NTLQPRITR 312 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCC--CcHHHHHHH
Confidence 7889999999999999999998762 234455543
No 197
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=45.84 E-value=53 Score=23.26 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=31.2
Q ss_pred HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccc
Q psy13759 12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPI 46 (114)
Q Consensus 12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~ 46 (114)
.....++..+..+..|....||.+++-.+.+++..
T Consensus 137 ~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 137 TDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred ccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 34567889999999999999999999999999977
No 198
>PF08664 YcbB: YcbB domain; InterPro: IPR013972 YcbB is a DNA-binding protein [].
Probab=45.03 E-value=27 Score=24.76 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHH
Q psy13759 29 NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLN 74 (114)
Q Consensus 29 s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~ 74 (114)
.+|||+++...+..+| .+|-+...+...-.|.+.+=| ..+||.-
T Consensus 68 EQRIRRai~~al~nlA-sLGl~Dy~N~~Fe~YA~~lFd-F~~Vr~e 111 (134)
T PF08664_consen 68 EQRIRRAIKQALTNLA-SLGLEDYSNPIFEEYASRLFD-FEEVRKE 111 (134)
T ss_pred HHHHHHHHHHHHHHHH-HhCCcccCChHHHHHHHHcCC-HHHHHHH
Confidence 5799999999999999 788777777666666666665 3466654
No 199
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=44.53 E-value=62 Score=21.35 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=43.6
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh---hhhHHHHHHhcCCC
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV---DHLLPLFLSQLKDE 67 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~---~~llP~~~~LL~D~ 67 (114)
...++..+....++-+..||.-....+.-+-+..|.+... ..+++.|..++.-.
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 3457778888899999999999998888888888887332 37899999998876
No 200
>KOG0413|consensus
Probab=44.04 E-value=82 Score=29.96 Aligned_cols=73 Identities=15% Similarity=0.046 Sum_probs=52.0
Q ss_pred CChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc-hhhhhhHHHHHHhcCCCChHHHHHHHHhHH
Q psy13759 8 NSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH-NTVDHLLPLFLSQLKDECPEVRLNIISNLD 80 (114)
Q Consensus 8 ~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e-~~~~~llP~~~~LL~D~e~EVR~~a~~~l~ 80 (114)
|+-......+|.+++.++.|+--.||.-.|+.++++--.-+.= ...+.-+-.++..++|.|..|...+..-+.
T Consensus 608 cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~ 681 (1529)
T KOG0413|consen 608 CDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIM 681 (1529)
T ss_pred cchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444444456888999999999999999999999865332221 123455677788899999999887775443
No 201
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=43.86 E-value=54 Score=29.30 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=41.9
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccc--cccCcchhhhhhHHHHHHhcCCCC
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLS--PILGKHNTVDHLLPLFLSQLKDEC 68 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la--~~lg~e~~~~~llP~~~~LL~D~e 68 (114)
...++|-+.+++..++..++..+...+.+++ +..-.......++|.++.||+|+.
T Consensus 329 ~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~ 385 (708)
T PF05804_consen 329 ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN 385 (708)
T ss_pred HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc
Confidence 3448888888888888888888888888887 333356666678999999998863
No 202
>KOG2933|consensus
Probab=43.36 E-value=24 Score=28.78 Aligned_cols=62 Identities=18% Similarity=0.092 Sum_probs=43.7
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc----hhhhhhHHHHHHhcCCCChHHHHHHHHh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKH----NTVDHLLPLFLSQLKDECPEVRLNIISN 78 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e----~~~~~llP~~~~LL~D~e~EVR~~a~~~ 78 (114)
++|-+....+..+.|||...+..+...-+.+|.+ .....+.+-..+=+.|.-|++|.++=..
T Consensus 206 ~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~ 271 (334)
T KOG2933|consen 206 LLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPELREAARFV 271 (334)
T ss_pred HHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhcccccccccchhHH
Confidence 4444444577889999999999888888777732 2334566777888888888888555433
No 203
>KOG1525|consensus
Probab=43.13 E-value=84 Score=30.11 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=55.0
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc--hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH--NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e--~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
...-++|.+..=+.-.+..||..+..-.+.+-..-+.. .+...+...|++=+.|-..+||..+++....+--.
T Consensus 256 ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 256 LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 35568999987777777889988777666654333332 33567899999999999999999999988865444
No 204
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=42.70 E-value=1e+02 Score=20.73 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=52.7
Q ss_pred hHHHHhhHHHHHH---hcCCCC----HHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCC--CChHHHHHHHHhHHH
Q psy13759 11 GNFVSKSIKRTQD---LVADPN----QHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKD--ECPEVRLNIISNLDC 81 (114)
Q Consensus 11 ~~~~~~ilP~l~~---L~~D~s----~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D--~e~EVR~~a~~~l~~ 81 (114)
+.+.++++..++. -..|.+ -.-|...=..+.++-+..|+..+ ..+|-+...|+= +.+|.|..+.+.-..
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~--~a~pQI~acL~saL~~~eL~~~al~~W~~ 80 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS--SALPQIMACLQSALEIPELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4456666666654 444555 22366666777777777775544 455655555544 477899999999999
Q ss_pred HHhhhChhh
Q psy13759 82 VNEVIGIQQ 90 (114)
Q Consensus 82 ~~~~l~~~~ 90 (114)
+...++++.
T Consensus 81 ~i~~L~~~~ 89 (107)
T smart00802 81 LIKTLKEEE 89 (107)
T ss_pred HHHhCCHHH
Confidence 999999865
No 205
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=41.73 E-value=38 Score=22.48 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=37.0
Q ss_pred hhhHHHHHHhcCCCC----hHHHHHHHHhHHHHHhhhChhhHhhh-HhHHHHH
Q psy13759 54 DHLLPLFLSQLKDEC----PEVRLNIISNLDCVNEVIGIQQDVSF-KLGQVDR 101 (114)
Q Consensus 54 ~~llP~~~~LL~D~e----~EVR~~a~~~l~~~~~~l~~~~i~~~-iLP~i~~ 101 (114)
..++.++.+.++... .++..++++-+..+.++++.+.+.++ +++.+-+
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~ 133 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQ 133 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHH
Confidence 347778888777755 89999999999999999999877663 6666644
No 206
>KOG1048|consensus
Probab=41.05 E-value=1.3e+02 Score=27.07 Aligned_cols=67 Identities=21% Similarity=0.260 Sum_probs=55.5
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhh-------hhHHHHHHhcCC-CChHHHHHHHHhHHHHHhh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVD-------HLLPLFLSQLKD-ECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~-------~llP~~~~LL~D-~e~EVR~~a~~~l~~~~~~ 85 (114)
-+|-+..|...++.+|...+|.++.++. +|++...+ .=+|..+++|+- .+.|||..+...+-++...
T Consensus 276 gI~kLv~Ll~~~~~evq~~acgaLRNLv--f~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 276 GIPKLVALLDHRNDEVQRQACGALRNLV--FGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHHHhhh--cccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 6888899999999999999999999986 55444222 238999999997 6889999999888888776
No 207
>KOG2213|consensus
Probab=40.49 E-value=96 Score=26.28 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=34.0
Q ss_pred HHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 35 ALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 35 ~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
-+++.|+..=.+++.=. ++-+-..+.++.|.+..||..|+..++.||+-
T Consensus 43 lasq~ip~~fk~fp~la--~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 43 LASQFIPRFFKHFPSLA--DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHHhhCchhh--hHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 34445555544554321 23456677889999999999999999999986
No 208
>KOG2956|consensus
Probab=40.47 E-value=2.4e+02 Score=24.38 Aligned_cols=84 Identities=11% Similarity=-0.088 Sum_probs=36.1
Q ss_pred hHHHHHHhcCC-CCHHHHHHHHHHHHccccccCcchh--hhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhh
Q psy13759 17 SIKRTQDLVAD-PNQHVKSALASVIMGLSPILGKHNT--VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVS 93 (114)
Q Consensus 17 ilP~l~~L~~D-~s~~VR~~~a~~l~~la~~lg~e~~--~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~ 93 (114)
||-.+-.-..| .+...|..+-..+.+++..-+.... .+..+--+++--+|...+|-..|.+..........|..-+.
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~ 409 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIV 409 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHH
Confidence 33333333444 4444444444555555544332211 12233444444555555554444444444444444433334
Q ss_pred hHhHHHH
Q psy13759 94 FKLGQVD 100 (114)
Q Consensus 94 ~iLP~i~ 100 (114)
.|-|++.
T Consensus 410 ~i~~~Il 416 (516)
T KOG2956|consen 410 NISPLIL 416 (516)
T ss_pred HHhhHHh
Confidence 4444443
No 209
>KOG2759|consensus
Probab=40.20 E-value=47 Score=28.08 Aligned_cols=66 Identities=17% Similarity=0.113 Sum_probs=44.2
Q ss_pred hHHHHHHhcCCCC-HHHHHHHHHHHHccccccCcchhh--h-hhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759 17 SIKRTQDLVADPN-QHVKSALASVIMGLSPILGKHNTV--D-HLLPLFLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 17 ilP~l~~L~~D~s-~~VR~~~a~~l~~la~~lg~e~~~--~-~llP~~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
++-.+..+++-++ +.+=.-+|..+++..++.+.-... + .-=..+.+|++-++|+||-+|+..+.++
T Consensus 367 llkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 367 LLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred HHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 5555555555433 555566666777776666543222 2 3456789999999999999999887764
No 210
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=40.02 E-value=19 Score=18.23 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=12.4
Q ss_pred hhhHHHHHHhcCCCChHHHHH
Q psy13759 54 DHLLPLFLSQLKDECPEVRLN 74 (114)
Q Consensus 54 ~~llP~~~~LL~D~e~EVR~~ 74 (114)
+.++|++.+-|++.+--+|.+
T Consensus 2 ~~IVpyi~~~L~N~~LAl~lA 22 (24)
T PF09268_consen 2 ENIVPYILNTLQNPDLALRLA 22 (24)
T ss_dssp TTHHHHHHHTT--HHHHHHHH
T ss_pred ccchhHHHhccCCHHHHHHHh
Confidence 357777777777766555554
No 211
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=39.73 E-value=57 Score=23.09 Aligned_cols=78 Identities=12% Similarity=-0.003 Sum_probs=54.0
Q ss_pred HHhcC-CCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh--------ChhhHh
Q psy13759 22 QDLVA-DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI--------GIQQDV 92 (114)
Q Consensus 22 ~~L~~-D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l--------~~~~i~ 92 (114)
+.+.. .....||..+.-.+..+- ...++...+.+-.++..++.+.+.+-...+++.+..+-+.. ..+.+.
T Consensus 10 ~~L~~~~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~ 88 (157)
T PF11701_consen 10 TSLDMLRQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFL 88 (157)
T ss_dssp HHHHCTTTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHH
T ss_pred HHhcccCCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHH
Confidence 33443 667889998887777763 34455667788899999998888887777877776554433 344566
Q ss_pred hhHhHHHH
Q psy13759 93 SFKLGQVD 100 (114)
Q Consensus 93 ~~iLP~i~ 100 (114)
+.++|...
T Consensus 89 ~~l~~~~~ 96 (157)
T PF11701_consen 89 ESLLPLAS 96 (157)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66777665
No 212
>PF02944 BESS: BESS motif; InterPro: IPR004210 The BESS domain has been named after the three proteins that originally defined the domain: BEAF (Boundary element associated factor 32) [], Suvar(3)7 [] and Stonewall []). The BESS domain is 40 amino acid residues long and is predicted to be composed of three alpha helices, as such it might be related to the myb/SANT HTH domain. The BESS domain directs a variety of protein-protein interactions, including interactions with itself, with Dorsal, and with a TBP-associated factor. It is found in a single copy in Drosophila proteins and is often associated with the MADF domain [, , ]. Proteins known to contain a BESS domain include: Drosophila Boundary element associated factor 32 (BEAF-32). Drosophila Suppressor of variegation protein 3-7 (Su(var)3-7), which could play a role in chromosome condensation. Drosophila Ravus, which is homologous to the C-terminal part of Su(var)3-7 []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation. Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3). It functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. ; GO: 0003677 DNA binding
Probab=39.54 E-value=30 Score=18.74 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=26.5
Q ss_pred hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHc
Q psy13759 10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMG 42 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~ 42 (114)
.+.+..-++|.++++..+..-.+|..+.+.+.+
T Consensus 4 d~~Fl~Sl~p~~k~L~~~~k~~~k~~i~~ll~e 36 (37)
T PF02944_consen 4 DELFLLSLLPHMKRLPPKQKLKFKMKILQLLFE 36 (37)
T ss_pred HHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 345667789999999999988999888877665
No 213
>KOG0868|consensus
Probab=38.98 E-value=17 Score=27.60 Aligned_cols=14 Identities=29% Similarity=0.152 Sum_probs=11.1
Q ss_pred cCCCCHHHHHHHHH
Q psy13759 25 VADPNQHVKSALAS 38 (114)
Q Consensus 25 ~~D~s~~VR~~~a~ 38 (114)
-+.=|||||-++|-
T Consensus 13 rSSCswRVRiALaL 26 (217)
T KOG0868|consen 13 RSSCSWRVRIALAL 26 (217)
T ss_pred cccchHHHHHHHHH
Confidence 34559999999985
No 214
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=38.55 E-value=1.2e+02 Score=21.55 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=21.5
Q ss_pred ChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHHHHH
Q psy13759 68 CPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTS 103 (114)
Q Consensus 68 e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~~l~ 103 (114)
.+.||.-|++.+.. .+.+.+.-.+.-.+|.|-
T Consensus 84 ~~~vr~yAv~~L~~----~~~~~l~~ylpQLVQaLk 115 (152)
T cd00864 84 DPVVRQYAVRVLES----ASDDELLLYLPQLVQALK 115 (152)
T ss_pred CHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHh
Confidence 48999999988866 456666545544445543
No 215
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=38.27 E-value=1.5e+02 Score=23.01 Aligned_cols=34 Identities=15% Similarity=0.010 Sum_probs=23.6
Q ss_pred hHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759 56 LLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 56 llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
....|+++++=+++-++..++..+..+...-+..
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~ 139 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKR 139 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT-
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 4566667888789999999998888887766543
No 216
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=37.94 E-value=1.4e+02 Score=20.88 Aligned_cols=76 Identities=9% Similarity=0.082 Sum_probs=55.8
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHH---Hccc-cccCcchhhhhhHHHHHHhcCC-CChHHHHHHHHhHHHHHhhhCh
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVI---MGLS-PILGKHNTVDHLLPLFLSQLKD-ECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l---~~la-~~lg~e~~~~~llP~~~~LL~D-~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
..+.+-.+++-.+.++++|=..+-..+ .+=| ..+..+.....++..+.+++++ ..++||..++.-+..-+...+.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 445666676666777777766444333 3333 4566788888999999999985 6889999999999999888865
Q ss_pred h
Q psy13759 89 Q 89 (114)
Q Consensus 89 ~ 89 (114)
+
T Consensus 119 ~ 119 (142)
T cd03569 119 K 119 (142)
T ss_pred C
Confidence 4
No 217
>KOG1293|consensus
Probab=37.80 E-value=1.5e+02 Score=26.52 Aligned_cols=73 Identities=7% Similarity=-0.059 Sum_probs=54.0
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHcccccc---CcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPIL---GKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~l---g~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
..+.-....+.--++..+|.+.+..+..++..+ .......++...+++++.|++.-|..++.+.+.++.=-.+
T Consensus 376 ~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs 451 (678)
T KOG1293|consen 376 TTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS 451 (678)
T ss_pred HHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc
Confidence 334444444556678889999999888877544 3344456778888889999999999999999988765554
No 218
>KOG4199|consensus
Probab=37.39 E-value=95 Score=26.06 Aligned_cols=40 Identities=18% Similarity=0.054 Sum_probs=30.5
Q ss_pred hHHHHHHhcCC-CChHHHHHHHHhHHHHHhhhChhhHhhhH
Q psy13759 56 LLPLFLSQLKD-ECPEVRLNIISNLDCVNEVIGIQQDVSFK 95 (114)
Q Consensus 56 llP~~~~LL~D-~e~EVR~~a~~~l~~~~~~l~~~~i~~~i 95 (114)
=+..+++++.| ++.++|..+=.-++-+-..-|.+...+.|
T Consensus 284 Gl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~I 324 (461)
T KOG4199|consen 284 GLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTI 324 (461)
T ss_pred CHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHH
Confidence 46778899999 89999977777777777777877655554
No 219
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=36.85 E-value=1.7e+02 Score=23.01 Aligned_cols=65 Identities=12% Similarity=0.025 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCC--ChHHHHHHHHhHHHHHhhhChhhHhhhHh
Q psy13759 29 NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDE--CPEVRLNIISNLDCVNEVIGIQQDVSFKL 96 (114)
Q Consensus 29 s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~--e~EVR~~a~~~l~~~~~~l~~~~i~~~iL 96 (114)
-|-+|. +...+.+..+....+. ...+-..|+.++-.. .++||..+.+.+.++...-+.. +...|+
T Consensus 180 ~w~~~a-l~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li 246 (339)
T PF12074_consen 180 CWLLRA-LEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLI 246 (339)
T ss_pred HHHHHH-HHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHH
Confidence 455543 3344444444444444 456777788888887 8999999998888776655543 333343
No 220
>KOG2011|consensus
Probab=36.06 E-value=55 Score=30.68 Aligned_cols=60 Identities=17% Similarity=0.058 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 26 ADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 26 ~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
.|-.+..|..+-+.++.=.+..+.--.....|.++==.|.|.+.+||...++.+..+-..
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 499999999999999988888888888889999999999999999999999999988776
No 221
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=35.97 E-value=1.5e+02 Score=20.75 Aligned_cols=74 Identities=9% Similarity=0.035 Sum_probs=53.6
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHH---HHHHccc-cccCcchhhhhhHHHHHHhcCC------CChHHHHHHHHhHHHHHh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALA---SVIMGLS-PILGKHNTVDHLLPLFLSQLKD------ECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a---~~l~~la-~~lg~e~~~~~llP~~~~LL~D------~e~EVR~~a~~~l~~~~~ 84 (114)
.+.+-.+..-++.++++|=.-+- +.+.+=| ..|..+.....++..+++++.+ ..++||.-++.-+..-+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 44566676667788887654332 3333333 5577888888999999999974 578999999998888887
Q ss_pred hhCh
Q psy13759 85 VIGI 88 (114)
Q Consensus 85 ~l~~ 88 (114)
.++.
T Consensus 117 ~f~~ 120 (139)
T cd03567 117 ELPH 120 (139)
T ss_pred Hhcc
Confidence 7753
No 222
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=35.80 E-value=64 Score=22.63 Aligned_cols=58 Identities=10% Similarity=0.144 Sum_probs=40.0
Q ss_pred CChhHHHHhhHHHHHHhcC-CCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcC
Q psy13759 8 NSDGNFVSKSIKRTQDLVA-DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK 65 (114)
Q Consensus 8 ~~~~~~~~~ilP~l~~L~~-D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~ 65 (114)
+..+.....++..+..+++ ..+.+||.-+.+.+..-+..++.+.....+.-.|-.|.+
T Consensus 76 fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~ 134 (142)
T cd03569 76 FHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKPQLKYVVDTYQILKA 134 (142)
T ss_pred HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 3344444556666666665 678899999999999999988876554555555555543
No 223
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=35.07 E-value=1.9e+02 Score=21.50 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=21.9
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHh
Q psy13759 55 HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDV 92 (114)
Q Consensus 55 ~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~ 92 (114)
.++..+.++-++++.+-|..+=..+......+||+.+.
T Consensus 41 ~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL 78 (198)
T PF08161_consen 41 PILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVL 78 (198)
T ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHH
Confidence 44444555555555566666666666666666666543
No 224
>KOG2274|consensus
Probab=35.07 E-value=1.2e+02 Score=28.15 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=61.3
Q ss_pred hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh
Q psy13759 10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
.+..+..|...+-.++-|++-.+|.++|-.+..||...=++.. -+++|.+.+++.+.+..=-.++..-+..+..-+..
T Consensus 84 ~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~W-pElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ 161 (1005)
T KOG2274|consen 84 SEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEW-PELVPFILKLLSSGNENSIHGAMRVLAELSDEVDV 161 (1005)
T ss_pred cHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhh-HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHH
Confidence 3455666777777777799999999999999999977766666 46899999999987766667777777777776643
No 225
>KOG1837|consensus
Probab=34.68 E-value=2.7e+02 Score=27.59 Aligned_cols=90 Identities=14% Similarity=0.017 Sum_probs=55.8
Q ss_pred HHHhhHHHHHHhcC--CCCH---HHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 13 FVSKSIKRTQDLVA--DPNQ---HVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 13 ~~~~ilP~l~~L~~--D~s~---~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
+.--..|.+.++.+ =... +|=..++..+...+.+.+.+ -..+..-.+.-.+|+.+-+|..|+.++.-+...+|
T Consensus 1496 ~~~~~~p~v~ql~n~~~e~~~~~~v~~~li~~i~~~~~a~~~d--~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lg 1573 (1621)
T KOG1837|consen 1496 FELLSYPLVSQLVNVLLEFYASDIVSKLLIAEIASDSVADKDD--LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLG 1573 (1621)
T ss_pred hhhhhhhhHHHHHHhhccchhhhHHHHHHHHHHHhhccCChhh--hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc
Confidence 33335666666655 2222 23334444444444444433 22344444555678888999999999999999998
Q ss_pred hhh--HhhhHhHHHHHHHH
Q psy13759 88 IQQ--DVSFKLGQVDRTSF 104 (114)
Q Consensus 88 ~~~--i~~~iLP~i~~l~~ 104 (114)
..- ...+++|++.+|-.
T Consensus 1574 e~~~~lL~q~iPfLaEL~E 1592 (1621)
T KOG1837|consen 1574 ENVIVLLPQSIPFLAELME 1592 (1621)
T ss_pred chhHHhhhhhhHHHHHHHh
Confidence 763 56778888877643
No 226
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.60 E-value=67 Score=26.57 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=30.2
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG 48 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg 48 (114)
.....+.-+.+..|+.|.|.+||..+|..+.+ |+..+
T Consensus 42 r~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~-~~~~P 78 (364)
T COG5330 42 REDMRQFEDLARPLLDDSSEEVRRELAAALAQ-CETAP 78 (364)
T ss_pred HHHHHHHHHHHHHHhhCccHHHHHHHHHHHHh-CCcCC
Confidence 44566788899999999999999999999988 44444
No 227
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=33.42 E-value=1.4e+02 Score=19.46 Aligned_cols=45 Identities=27% Similarity=0.133 Sum_probs=31.3
Q ss_pred hHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC-hhhHhhhHhHHHH
Q psy13759 56 LLPLFLSQLKDECPEVRLNIISNLDCVNEVIG-IQQDVSFKLGQVD 100 (114)
Q Consensus 56 llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~-~~~i~~~iLP~i~ 100 (114)
-+...++.++|+.+=||..++..+.++...=. +..-...++..+.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l 49 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFL 49 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 34556778899999999999999988877665 3333344544443
No 228
>KOG1020|consensus
Probab=33.22 E-value=2.2e+02 Score=28.22 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=49.7
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
+.-.+..-..|++..||-++.+-++... +....+....-..+.+=..|+..-||+.+++.+.++|..-+
T Consensus 856 vq~~Vh~R~~DssasVREAaldLvGrfv--l~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 856 VQEAVHGRLNDSSASVREAALDLVGRFV--LSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHhhhh--hccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 5666777788888888888888877543 22233344555667777788888888888888888887664
No 229
>KOG2081|consensus
Probab=33.02 E-value=3.2e+02 Score=23.98 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcC--CCChHHHHHHHHhHHHHHhhhChh
Q psy13759 26 ADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK--DECPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 26 ~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~--D~e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
...+|+.=.++--.+..+++.+..+.. .++|.+++++. ++-..+|..++.-+..+++|+...
T Consensus 399 ~~~~We~~EAaLF~l~~~~~~~~~~e~--~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~ 462 (559)
T KOG2081|consen 399 NNASWEEVEAALFILRAVAKNVSPEEN--TIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQH 462 (559)
T ss_pred CCCchHHHHHHHHHHHHHhccCCcccc--chHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhC
Confidence 578999988888888888877776553 46666666654 355669999999999999998644
No 230
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=32.96 E-value=49 Score=23.77 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=28.8
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHcccccc
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPIL 47 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~l 47 (114)
....++..+..+..|++..||.+++-.+.+++..-
T Consensus 152 ~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 152 DFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp HHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred CHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 34568888889999999999999999999998664
No 231
>KOG3534|consensus
Probab=32.85 E-value=1e+02 Score=28.39 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=61.3
Q ss_pred HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCC--CChHHHHHHHHhHHHHHhhh
Q psy13759 12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKD--ECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D--~e~EVR~~a~~~l~~~~~~l 86 (114)
.+..+++..++.|.+++=-+--..+-+...++|..=--|.-...++.+|..-|+| +-||.+....+++-++++.+
T Consensus 923 VvmdelLKivk~Llqg~ilq~vktl~~~MPKiCkLPR~eYGSpgiL~yy~h~L~div~Y~elKte~fQ~lRE~GN~I 999 (1253)
T KOG3534|consen 923 VVMDELLKIVKSLLQGTILQYVKTLMEVMPKICKLPRHEYGSPGILEYYHHHLKDIVEYPELKTEFFQSLREVGNAI 999 (1253)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCCccccCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHH
Confidence 4567889999999999876655667788889996555566667899999999999 78999999999998877755
No 232
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=32.71 E-value=2.6e+02 Score=22.36 Aligned_cols=79 Identities=20% Similarity=0.105 Sum_probs=59.4
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh---hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV---DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVS 93 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~---~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~ 93 (114)
..|-+-.+.+..|-.||..+=+.+.+.--.+|+ ... ..++..++-=+.|+..|+-..+.+-+..+...+|.+.+-+
T Consensus 98 ~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~ 176 (307)
T PF04118_consen 98 YSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQ 176 (307)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHH
Confidence 455566677778889999888888876667777 333 3455555556789999999999999999999999986555
Q ss_pred hHh
Q psy13759 94 FKL 96 (114)
Q Consensus 94 ~iL 96 (114)
.+-
T Consensus 177 ~lw 179 (307)
T PF04118_consen 177 CLW 179 (307)
T ss_pred HHH
Confidence 543
No 233
>PF07834 RanGAP1_C: RanGAP1 C-terminal domain; InterPro: IPR009109 Ran GTPase is a ubiquitous protein required for nuclear transport, spindle assembly, nuclear assembly and mitotic cell cycle regulation. RanGTPase activating protein 1 (RanGAP1) is one of several RanGTPase accessory proteins. During interphase, RanGAP1 is located in the cytoplasm, while during mitosis it becomes associated with the kinetochores []. Cytoplasmic RanGAP1 is required for RanGTPase-directed nuclear transport. The activity of RanGAP1 requires the accessory protein RanBP1. RanBP1 facilitates RanGAP1 hydrolysis of Ran-GTP, both directly and by promoting the dissociation of Ran-GTP from transport receptors, which would otherwise block RanGAP1-mediated hydrolysis. RanGAP1 is thought to bind to the Switch 1 and Switch 2 regions of RanGTPase. The Switch 2 region can be buried in complexes with karyopherin-beta2, and requires the interaction with RanBP1 to permit RanGAP1 function. RanGAP1 can undergo SUMO (small ubiquitin-like modifier) modification, which targets RanGAP1 to RanBP2/Nup358 in the nuclear pore complex, and is required for association with the nuclear pore complex and for nuclear transport []. The enzymes involved in SUMO modification are located on the filaments of the nuclear pore complex. The RanGAP1 N-terminal domain is fairly well conserved between vertebrate and fungal proteins, but yeast does not contain the C-terminal domain. The C-terminal domain is SUMO-modified and required for the localisation of RanGAP1 at the nuclear pore complex. The structure of the C-terminal domain is multihelical, consisting of two curved alpha/alpha layers in a right-handed superhelix.; GO: 0005098 Ran GTPase activator activity, 0007165 signal transduction; PDB: 2IO2_C 2GRQ_B 3UIN_C 2GRO_B 3UIP_C 2IO3_C 2GRN_B 3UIO_C 2GRP_B 2GRR_B ....
Probab=31.53 E-value=67 Score=24.05 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=24.9
Q ss_pred HhcCCCChHHHHHHHHhHHHHHhhh-ChhhHhhhHhHHHHHHHHHHHHHh
Q psy13759 62 SQLKDECPEVRLNIISNLDCVNEVI-GIQQDVSFKLGQVDRTSFLTAVLV 110 (114)
Q Consensus 62 ~LL~D~e~EVR~~a~~~l~~~~~~l-~~~~i~~~iLP~i~~l~~~~~~~~ 110 (114)
.+++|+ .|||.++...++.+.+-. .. +.++..+|+++.||
T Consensus 75 Sv~~~~-~~vk~av~~~~Dall~kaFs~--------~~~~~~~f~n~LLV 115 (183)
T PF07834_consen 75 SVYNDE-SEVKSAVLQCIDALLKKAFSS--------ASFQSNSFLNSLLV 115 (183)
T ss_dssp CT--SS-HHHHHHHHHHHHHHHHHHHCS--------TTS-HHHHHHHHHH
T ss_pred HHHcCc-HHHHHHHHHHHHHHHHHHHhc--------cccchHHHHHHHHH
Confidence 466774 899999999888776543 21 22256667777665
No 234
>KOG0392|consensus
Probab=31.44 E-value=2.7e+02 Score=27.22 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=48.1
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC--cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILG--KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg--~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
...+-++-++..-++|++|..=...+........ -......+++.+..-|+|..-+||..+++.+..+....
T Consensus 166 ~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 166 KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHH
Confidence 3455555566666699988643333322221111 11344567899999999999999999999998887776
No 235
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=31.42 E-value=48 Score=25.54 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=33.4
Q ss_pred CChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccc
Q psy13759 8 NSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPI 46 (114)
Q Consensus 8 ~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~ 46 (114)
+..+.....++|....+..|....||.+++-.+.+++.+
T Consensus 146 ~k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~ 184 (222)
T COG4912 146 KKKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKH 184 (222)
T ss_pred hcCccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHhh
Confidence 345556668999999999999999999999999998863
No 236
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=31.29 E-value=88 Score=23.29 Aligned_cols=91 Identities=18% Similarity=0.150 Sum_probs=53.6
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHh
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDV 92 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~ 92 (114)
....++-.+-++-++.+...|..+=+.++..-+.+|++..-+ ++|+=..- .|...+=|.=.+-=+......-.-.-+.
T Consensus 38 ~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLnl~~-~~~~~~~raWLLPlLr~~i~~~~L~fF~ 115 (198)
T PF08161_consen 38 LLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLNLDN-ADDSQPGRAWLLPLLRDHIRNASLSFFV 115 (198)
T ss_pred HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCCccC-CCcCCcccchhHHHHHHhccCCChHHHH
Confidence 445566666667778888999999999998889999988753 44532221 2222233333332222222222334567
Q ss_pred hhHhHHHHHHHHH
Q psy13759 93 SFKLGQVDRTSFL 105 (114)
Q Consensus 93 ~~iLP~i~~l~~~ 105 (114)
++|+|..+.+-..
T Consensus 116 ~~~lPla~~~~~~ 128 (198)
T PF08161_consen 116 EEFLPLARRLRQK 128 (198)
T ss_pred HHHHHHHHHHHHH
Confidence 7888887765443
No 237
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=31.27 E-value=3.2e+02 Score=23.04 Aligned_cols=86 Identities=12% Similarity=0.100 Sum_probs=53.8
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCC--hHHHHHHHHhHHHHHhhhChhhHhh
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDEC--PEVRLNIISNLDCVNEVIGIQQDVS 93 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e--~EVR~~a~~~l~~~~~~l~~~~i~~ 93 (114)
.+-|.+.++++ +...||..+-+.+..+=..+.......-=+.-+++..++++ +-||.-.+--+..=-+.++.+.-.
T Consensus 24 ~L~plLlkl~S-~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e~~- 101 (501)
T PF13001_consen 24 YLPPLLLKLAS-PHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEERR- 101 (501)
T ss_pred HHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHHHH-
Confidence 35555555555 57799998877777666555543333333555677777766 888888877777666777666542
Q ss_pred hHhHHH-HHHH
Q psy13759 94 FKLGQV-DRTS 103 (114)
Q Consensus 94 ~iLP~i-~~l~ 103 (114)
.++|.+ +.++
T Consensus 102 ~llP~ll~~is 112 (501)
T PF13001_consen 102 ELLPSLLKGIS 112 (501)
T ss_pred HHHHHHHHhhc
Confidence 344443 3444
No 238
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=30.86 E-value=2.5e+02 Score=21.65 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=31.3
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcch
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHN 51 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~ 51 (114)
-++|.+-.++.|.+..+|.--+..+..+.+.++...
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~ 154 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE 154 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 389999999999999999999998888887776555
No 239
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=30.74 E-value=1.6e+02 Score=19.44 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=52.8
Q ss_pred HHHHhhHHHHH---HhcCC----CCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCC--CChHHHHHHHHhHHHH
Q psy13759 12 NFVSKSIKRTQ---DLVAD----PNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKD--ECPEVRLNIISNLDCV 82 (114)
Q Consensus 12 ~~~~~ilP~l~---~L~~D----~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D--~e~EVR~~a~~~l~~~ 82 (114)
.+..+++..+. .-..| .+-.-|..+-..++++-+..|+.. +...|-+...|+- +.+|+|..+.+.-..|
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i--~~~~pQI~a~L~sal~~~~l~~~al~~W~~f 81 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHI--SSARPQIMACLQSALEIPELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 34555555554 34445 566667777778888888444433 3455666666654 3559999999999999
Q ss_pred HhhhChhhH
Q psy13759 83 NEVIGIQQD 91 (114)
Q Consensus 83 ~~~l~~~~i 91 (114)
.+.++++.+
T Consensus 82 i~~L~~~~l 90 (107)
T PF08064_consen 82 IKTLDEEDL 90 (107)
T ss_pred HHHCCHHHH
Confidence 999999654
No 240
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=30.05 E-value=75 Score=23.63 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=40.3
Q ss_pred HHHHHHHHccccccCcchhh-h---hh-HHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759 34 SALASVIMGLSPILGKHNTV-D---HL-LPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 34 ~~~a~~l~~la~~lg~e~~~-~---~l-lP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
.--+..+..+|..+..+.+. . .+ =.+...|+.|..|-|++|+++=++-+++-.|-.
T Consensus 51 ~~Y~~nfn~ic~~i~~ndi~~~nI~~IK~~iie~L~~D~rPSVKLA~iSLlSiIiek~~~k 111 (180)
T PHA02855 51 KNYKTNFNEICNFIKVNDVTEENINDIKSQIIESLNNDNRPSVKLAIISLISMIAEKKGYK 111 (180)
T ss_pred HHHhccHHHHHHHHHHcchHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccc
Confidence 34455677788777764433 2 23 345667779999999999999999998888743
No 241
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=29.95 E-value=1.5e+02 Score=19.86 Aligned_cols=65 Identities=17% Similarity=0.294 Sum_probs=38.2
Q ss_pred HhhHHHHHHhcCCCC-HHHHHHHHHHHHccc-cccCc--------chhhhhhHHHHHHhcCCCChHHHHHHHHhH
Q psy13759 15 SKSIKRTQDLVADPN-QHVKSALASVIMGLS-PILGK--------HNTVDHLLPLFLSQLKDECPEVRLNIISNL 79 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s-~~VR~~~a~~l~~la-~~lg~--------e~~~~~llP~~~~LL~D~e~EVR~~a~~~l 79 (114)
...+-.+.++++|.+ +.|=..+.+-+.+++ ..+.. +..+...-|+++-+|+++-|-+|......-
T Consensus 6 k~FL~tLi~ls~~~~qpe~~~~Vr~LV~~L~~~~i~~EeF~~~Lq~~lns~~qP~lvPFLK~slp~Lr~~l~~~~ 80 (92)
T smart00549 6 KRFLTTLIQLSNDISQPEVAERVRTLVLGLVNGTITAEEFTSRLQEALNSPLQPYLIPFLKNSLPLLRRELLHCA 80 (92)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCCCchhHHHHHHhhHHHHHHHHHHH
Confidence 345666777888877 433333333333322 12222 233345778999999999999987766543
No 242
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=29.07 E-value=63 Score=19.12 Aligned_cols=38 Identities=13% Similarity=0.328 Sum_probs=23.2
Q ss_pred cccccCcchhhhhhHHHHHHhcCCC----ChHHHHHHHHhHHHH
Q psy13759 43 LSPILGKHNTVDHLLPLFLSQLKDE----CPEVRLNIISNLDCV 82 (114)
Q Consensus 43 la~~lg~e~~~~~llP~~~~LL~D~----e~EVR~~a~~~l~~~ 82 (114)
+|+..+++. ..+-+.+.+||++. +||.|..+++++--+
T Consensus 5 va~cYp~~~--~~Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLL 46 (52)
T PF08158_consen 5 VAHCYPKET--KDFPQELIDLLRNHHTVLDPDLRMKLVKALILL 46 (52)
T ss_pred cccccHHHH--HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 444454432 34455555555553 899999998887543
No 243
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=29.06 E-value=1.9e+02 Score=21.06 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=24.7
Q ss_pred ChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHHHHHH
Q psy13759 68 CPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTSF 104 (114)
Q Consensus 68 e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~~l~~ 104 (114)
++.||.-|++.+.. ++.+.+...++-.+|.|=|
T Consensus 84 d~~VR~yAV~~L~~----~sd~eL~~yL~QLVQaLKy 116 (171)
T cd00872 84 DEHVREFAVRCLEK----LSDDELLQYLLQLVQVLKY 116 (171)
T ss_pred CHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHc
Confidence 48999999988876 5677777777666776644
No 244
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=28.09 E-value=2.6e+02 Score=21.75 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=35.9
Q ss_pred HHHHhcCCC--CHHHHHHHHHHHHccc--cccCcchhhhhhHHHHHHhcCCCChHHHHHHH
Q psy13759 20 RTQDLVADP--NQHVKSALASVIMGLS--PILGKHNTVDHLLPLFLSQLKDECPEVRLNII 76 (114)
Q Consensus 20 ~l~~L~~D~--s~~VR~~~a~~l~~la--~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~ 76 (114)
.++.+..|+ ..-||.++...+..++ ....++...+.+-..|...++.+...+--..+
T Consensus 115 ~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv 175 (249)
T PF06685_consen 115 PLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLV 175 (249)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHH
Confidence 345556655 5689999999999887 33445555566666666656655444333333
No 245
>KOG1992|consensus
Probab=27.83 E-value=1.3e+02 Score=27.76 Aligned_cols=93 Identities=15% Similarity=0.129 Sum_probs=67.5
Q ss_pred hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh-----
Q psy13759 10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE----- 84 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~----- 84 (114)
.+.+.++++|-+.+---...+-+|+..-.-+.-.-+.+|++... .++|.+..+|+-++.-|-+=|+..++++--
T Consensus 454 ~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm-~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~ 532 (960)
T KOG1992|consen 454 VDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLM-ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENS 532 (960)
T ss_pred HHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHH-HHHHHHHHhccCcchHHHHHHHHHHHhccccccCc
Confidence 45677888888876555566667776666666667888887764 578999999999999998888877776532
Q ss_pred ---hhChhhHhhhHhHHHHHHH
Q psy13759 85 ---VIGIQQDVSFKLGQVDRTS 103 (114)
Q Consensus 85 ---~l~~~~i~~~iLP~i~~l~ 103 (114)
..|++.+..++++.+++|-
T Consensus 533 ~~~if~~~~iap~~~~ll~nLf 554 (960)
T KOG1992|consen 533 NAKIFGAEDIAPFVEILLTNLF 554 (960)
T ss_pred cccccchhhcchHHHHHHHHHH
Confidence 3456667666666666654
No 246
>KOG1848|consensus
Probab=27.55 E-value=2.3e+02 Score=27.84 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=39.6
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHcc----ccccCcchhhhhhHHHHHHhcC
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGL----SPILGKHNTVDHLLPLFLSQLK 65 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~l----a~~lg~e~~~~~llP~~~~LL~ 65 (114)
++-.+..++.|.-..||.++++.|-.+ +..+|+......+..++.-||.
T Consensus 998 ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd 1050 (1610)
T KOG1848|consen 998 LLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLD 1050 (1610)
T ss_pred HHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhc
Confidence 556678899999999999999988776 4677787777777777777776
No 247
>KOG0267|consensus
Probab=27.27 E-value=1.7e+02 Score=26.71 Aligned_cols=73 Identities=16% Similarity=0.116 Sum_probs=51.6
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
.+.+.+.+-.+-+=....||.-+-..+.+.++.++-+.+ ..++|.+..||.+...+=+..-+..+-++....|
T Consensus 674 r~DiK~sI~s~~kl~D~sV~ADvL~Iltek~eiLtLDl~-t~l~P~lt~LLgS~~e~~v~vsld~Llklv~~fg 746 (825)
T KOG0267|consen 674 RSDIKGSIGSLRKLADNSVQADVLNILTEKIEILTLDLC-TQLLPVLTALLGSKTERPVNVSLDMLLKLVAVFG 746 (825)
T ss_pred hhhhhHHHHHHHHhhhhhHHHHHHHHHhhhhhHhhHHHH-HHHHHHHHHHhcccchhhhhhHHHHHHHHHHHhh
Confidence 445667776665555667888888888888999998886 5799999999999754444444555555554444
No 248
>KOG0904|consensus
Probab=26.05 E-value=97 Score=28.88 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=31.6
Q ss_pred HHhcCC--CChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHHHHH
Q psy13759 61 LSQLKD--ECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTS 103 (114)
Q Consensus 61 ~~LL~D--~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~~l~ 103 (114)
++||.= +++.||.-|+..+ +.+.++.+.++||+.+|.|=
T Consensus 615 leLLd~nypD~~VR~fAV~~L----~~Lsdd~l~~YLLqLVQalK 655 (1076)
T KOG0904|consen 615 LELLDCNYPDPNVRAFAVRCL----EQLSDDDLLQYLLQLVQALK 655 (1076)
T ss_pred HHHhcCCCCcHHHHHHHHHHH----HhcChhHHHHHHHHHHHHHh
Confidence 445544 5788999999887 67888999999999999874
No 249
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=25.49 E-value=1.4e+02 Score=21.97 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=40.5
Q ss_pred ccCcchhhhhhHHHHHHhcCCC--ChHHHHHHHHhHHHHHhhhChhhHhhhHh
Q psy13759 46 ILGKHNTVDHLLPLFLSQLKDE--CPEVRLNIISNLDCVNEVIGIQQDVSFKL 96 (114)
Q Consensus 46 ~lg~e~~~~~llP~~~~LL~D~--e~EVR~~a~~~l~~~~~~l~~~~i~~~iL 96 (114)
.+..+...+.-+-.+..+++|+ .++.|..|..++..+.+....+.-++.+|
T Consensus 92 rl~Re~~r~~~~e~L~~ii~~~~~s~~~k~~A~~~~~~l~~~~~kE~~iE~ll 144 (196)
T PF12685_consen 92 RLEREQSRSKQIETLKEIINNENASEEEKKEAQDKLLELTEKMEKEMEIENLL 144 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778889999999997 57999999999999999998887666654
No 250
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=25.36 E-value=2.7e+02 Score=20.14 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=44.7
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccC----------------------cchh------hhhhHHHHHHhcCCC
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILG----------------------KHNT------VDHLLPLFLSQLKDE 67 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg----------------------~e~~------~~~llP~~~~LL~D~ 67 (114)
+-+|.+-.|..|++..+|..+-..+.++.+..+ .+.. ...++..+-++++ +
T Consensus 45 ~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~ 123 (187)
T PF12830_consen 45 QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-S 123 (187)
T ss_pred HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-c
Confidence 367999999999999999988776666554332 1111 3344555556666 4
Q ss_pred ChHHHHHHHHhHHHHHhhh
Q psy13759 68 CPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 68 e~EVR~~a~~~l~~~~~~l 86 (114)
..--|...++++.+.-..-
T Consensus 124 ~r~~R~~Fl~~l~k~f~~~ 142 (187)
T PF12830_consen 124 NRKSRRKFLKSLLKQFDFD 142 (187)
T ss_pred ccHhHHHHHHHHHHHHHhh
Confidence 4466666666666555443
No 251
>COG4335 DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=25.36 E-value=62 Score=23.75 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=45.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHcccc---ccCc-chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 21 TQDLVADPNQHVKSALASVIMGLSP---ILGK-HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 21 l~~L~~D~s~~VR~~~a~~l~~la~---~lg~-e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
+-.-+.|.+.|||.-..+...-=++ .+.+ ........++..++-.|.+--||...++++..+-+.=+
T Consensus 44 l~~wSe~~ne~vrrLssec~r~rlPws~~L~~~~~~~~~~~~il~al~adK~lyvrksvan~lndi~k~hp 114 (167)
T COG4335 44 LLRWSEHQNEHVRRLSSECTRPRLPWSKLLLKLQKDPSPVNMILTALKADKELYVRKSVANNLNDIKKVHP 114 (167)
T ss_pred HhhhccCccHHHHHHHhcccCCCCchHHHHHHHhhcCcchhHHHHhhHhHHHHHHHHHHHHHHHHhhhcCh
Confidence 3345779999999866654433221 1112 22224578889999999999999999999888766543
No 252
>PF11099 M11L: Apoptosis regulator M11L like; InterPro: IPR021119 This entry includes the poxvirus familes F1 and C10. C10 proteins are apoptosis regulators, which function to modulate the apoptotic cascades and thereby favour productive viral replication. One of these, M11L inhibits mitochondrial-dependent apoptosis by mimicking and competing with host proteins for the binding and blocking of Bak and Bax, two executioner proteins []. The poxvirus F1 family are a family of conserved proteins related to Vaccinia virus protein F1L. They have no known function.; PDB: 2O42_B 2JBY_A 2JBX_B 2VTY_A.
Probab=25.34 E-value=82 Score=23.26 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=21.6
Q ss_pred HHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 60 FLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 60 ~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
...|+.|..|.||+|.++=++.+++-.|
T Consensus 70 ~~~L~~D~rpsVkLAtISLiS~I~~k~~ 97 (167)
T PF11099_consen 70 IEILLSDNRPSVKLATISLISIIIEKWG 97 (167)
T ss_dssp HHHCCHT--HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhccCCCceeehHHHHHHHHHHHHh
Confidence 4556669999999999999999999886
No 253
>KOG2973|consensus
Probab=25.23 E-value=1.1e+02 Score=25.13 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=24.7
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 57 LPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 57 lP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
+-.++.|+.|..|.||.+|+.++.++...
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~ 33 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR 33 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc
Confidence 44578999999999999999988877665
No 254
>KOG1895|consensus
Probab=24.34 E-value=1.3e+02 Score=28.02 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=48.3
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHH
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNII 76 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~ 76 (114)
+-++++|.+..++.+..-.||..+++.+.++.-..= .....+++.|...+.|+ +-||.--+
T Consensus 17 ~~~e~~~~l~el~~~~~~~i~~~l~~~~~~i~~~~~--~~~~~lv~~ls~~l~d~-~~~r~~~i 77 (957)
T KOG1895|consen 17 ISDELLTELLELLELNDGLIRCLLVEILLEIGLKDF--ELCNKLVETLSPYLEDN-PIVRRQSI 77 (957)
T ss_pred ccHhHHHHHHHHHhCCcchhhhhHHHHHhhhhHHHH--HhhhhHHHHhhhhhcCc-hhhHHHHH
Confidence 347899999999999999999999999988763221 11257899999999999 78875443
No 255
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.34 E-value=1.7e+02 Score=22.66 Aligned_cols=79 Identities=10% Similarity=0.047 Sum_probs=48.8
Q ss_pred HhcCCCCHHHHHHHHHHHHccccccCcch----------------hhhhhHHHHHHhcCCCChHH-HHHHHH--------
Q psy13759 23 DLVADPNQHVKSALASVIMGLSPILGKHN----------------TVDHLLPLFLSQLKDECPEV-RLNIIS-------- 77 (114)
Q Consensus 23 ~L~~D~s~~VR~~~a~~l~~la~~lg~e~----------------~~~~llP~~~~LL~D~e~EV-R~~a~~-------- 77 (114)
.-++|..+.+...+-..|.++|..|.++. ..+.+...|.+-..++...| |..+..
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~~i~~~~~~vv~~~~~~~~~~~~~~ 250 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTSAIHSTTFSVVRSYVEQSESSEERS 250 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 33456667777777777777776665433 23446667777666654444 333332
Q ss_pred ---hHHHHHhhhChhhHhhhHhHHHHHHHHH
Q psy13759 78 ---NLDCVNEVIGIQQDVSFKLGQVDRTSFL 105 (114)
Q Consensus 78 ---~l~~~~~~l~~~~i~~~iLP~i~~l~~~ 105 (114)
+...+|..++++ +++|++.++++-
T Consensus 251 ~~~~y~~lC~~v~~~----~~~~cl~~l~~~ 277 (291)
T PF10475_consen 251 SKMSYKDLCKQVPSD----QFIPCLLELLEV 277 (291)
T ss_pred ccCCHHHHHhhCCHH----HHHHHHHHHHHH
Confidence 355777777775 467888877764
No 256
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=24.02 E-value=1.5e+02 Score=19.92 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=28.4
Q ss_pred HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccc
Q psy13759 12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPI 46 (114)
Q Consensus 12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~ 46 (114)
.+..-.++.+-.-+.|++..|+..+-+.+.+.|+.
T Consensus 4 ~f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 4 DFEDWGIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 34555788888888999999999999999888843
No 257
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism]
Probab=23.96 E-value=2.4e+02 Score=24.63 Aligned_cols=33 Identities=27% Similarity=0.135 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759 57 LPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 57 lP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
+..+..+|+|++.+||..|-.+..+...--..+
T Consensus 192 ~~~~~~ll~~~Dr~~Rk~A~~a~~~~~~~~~~t 224 (598)
T COG1164 192 LEQLLNLLEDPDREVRKAAYEALYKAYEKHRNT 224 (598)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 347999999999999999999998877766543
No 258
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=23.80 E-value=1.1e+02 Score=16.32 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=12.9
Q ss_pred hhHHHHHHhcCCCChHHH
Q psy13759 55 HLLPLFLSQLKDECPEVR 72 (114)
Q Consensus 55 ~llP~~~~LL~D~e~EVR 72 (114)
+++..+..++.|++.++|
T Consensus 17 ~~~~~L~~~l~~~~~~~~ 34 (35)
T PF01851_consen 17 EVLDLLRPYLSDTSNEMI 34 (35)
T ss_dssp HHHHHHHHHHCTSSHHHH
T ss_pred HHHHHHHHHHHhcccccc
Confidence 466666777788877776
No 259
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=23.70 E-value=2.7e+02 Score=22.73 Aligned_cols=67 Identities=6% Similarity=0.079 Sum_probs=45.7
Q ss_pred HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHh
Q psy13759 12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISN 78 (114)
Q Consensus 12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~ 78 (114)
++-.-++-.+-..+.++..+.|..+-+-+.|++=.-+.=.....=+..+.+.+-|...++-..++..
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~ 170 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDT 170 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHH
Confidence 3344466667778888999999999999999885544444445666777777777666644444333
No 260
>KOG1293|consensus
Probab=23.60 E-value=2e+02 Score=25.71 Aligned_cols=69 Identities=16% Similarity=0.095 Sum_probs=52.6
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc---hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH---NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e---~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
+++...+-++..|++-+|-.++-.++.++.=.+|.= -.....+-.+.+++.|..+.+|..+...+-.+.
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~ 489 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM 489 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 344444444559999999999999888888667642 223578999999999999999988887776554
No 261
>KOG1822|consensus
Probab=23.50 E-value=3.7e+02 Score=27.31 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=63.6
Q ss_pred cCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHH-HHHHHHhHHHHHhh
Q psy13759 7 INSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEV-RLNIISNLDCVNEV 85 (114)
Q Consensus 7 ~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EV-R~~a~~~l~~~~~~ 85 (114)
.+.++++..--+-.+-....-+++--|.++++.+..++...|.......+...++.=+++.-..| |..-.-.+..+-+.
T Consensus 867 ~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhky 946 (2067)
T KOG1822|consen 867 SLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKY 946 (2067)
T ss_pred ccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 55677777666666667777889999999999999999999999999999999999999964444 66655555555555
Q ss_pred hC
Q psy13759 86 IG 87 (114)
Q Consensus 86 l~ 87 (114)
+|
T Consensus 947 vg 948 (2067)
T KOG1822|consen 947 VG 948 (2067)
T ss_pred cc
Confidence 54
No 262
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=23.41 E-value=1.5e+02 Score=20.83 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=15.0
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHhHH
Q psy13759 55 HLLPLFLSQLKDECPEVRLNIISNLD 80 (114)
Q Consensus 55 ~llP~~~~LL~D~e~EVR~~a~~~l~ 80 (114)
.+-..|..||.+.+++|+..|++-+-
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll 42 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLL 42 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34455566666666666666655444
No 263
>KOG1020|consensus
Probab=22.69 E-value=2.9e+02 Score=27.39 Aligned_cols=69 Identities=7% Similarity=0.006 Sum_probs=55.7
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
.+..+-..+..+...||.-+-.++..+.+.-+.=.+...+.-.+-+=+.|+.+-||-+|+.=+..|.-.
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~ 885 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS 885 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc
Confidence 344444566689999999999999999987776666678888899999999999999999877755443
No 264
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=21.95 E-value=2.4e+02 Score=18.37 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=21.7
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG 48 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg 48 (114)
...++-.+..-.++++|+|-+-+=..+..+.+.-|
T Consensus 35 ~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g 69 (115)
T cd00197 35 PKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCG 69 (115)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc
Confidence 34566666666667777777766555555554444
No 265
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=21.86 E-value=4.5e+02 Score=21.75 Aligned_cols=85 Identities=11% Similarity=0.100 Sum_probs=47.1
Q ss_pred hHHHHHH--hcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhH
Q psy13759 17 SIKRTQD--LVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQD 91 (114)
Q Consensus 17 ilP~l~~--L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i 91 (114)
++|.+-+ +.-|..+.||.-+.+.+..+.+.-. .....+.+...|.++.+|....=-...-+-+..+|. +.|+ +
T Consensus 257 ~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~-l~p~-l 334 (373)
T PF14911_consen 257 VLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAE-LDPQ-L 334 (373)
T ss_pred hhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-hCHH-H
Confidence 4444432 3346677777777776666553322 344445677777777776654433333333333332 3443 4
Q ss_pred hhhHhHHHHHHH
Q psy13759 92 VSFKLGQVDRTS 103 (114)
Q Consensus 92 ~~~iLP~i~~l~ 103 (114)
+..++|.+.+-.
T Consensus 335 V~~Lip~i~q~l 346 (373)
T PF14911_consen 335 VISLIPTIRQSL 346 (373)
T ss_pred HHHHHHHHHHHH
Confidence 578888886543
No 266
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=21.63 E-value=2.5e+02 Score=20.26 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=24.9
Q ss_pred ChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHHHHHH
Q psy13759 68 CPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTSF 104 (114)
Q Consensus 68 e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~~l~~ 104 (114)
.+.||.-|++.+.. ++.+.+...++-.+|.|-|
T Consensus 91 ~~~VR~yAV~~L~~----~sd~eL~~yL~QLVQaLKy 123 (166)
T cd00870 91 NPVVRKYAVSRLKL----ASDEELLLYLLQLVQALKY 123 (166)
T ss_pred CHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHh
Confidence 58899999998886 5677777777666676644
No 267
>PHA02861 uncharacterized protein; Provisional
Probab=21.37 E-value=1.8e+02 Score=21.03 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=34.9
Q ss_pred HHHHHHHccccccCcch----hhhhhHHHHHHhcCCC-ChHHHHHHHHhHHHH
Q psy13759 35 ALASVIMGLSPILGKHN----TVDHLLPLFLSQLKDE-CPEVRLNIISNLDCV 82 (114)
Q Consensus 35 ~~a~~l~~la~~lg~e~----~~~~llP~~~~LL~D~-e~EVR~~a~~~l~~~ 82 (114)
++..-+...|+.-|-|. ..-..+-.+..|+.|. -+.||.++.-.+.++
T Consensus 96 AiIGL~A~~AeYWGged~Pt~~S~~vl~l~~~Llsd~d~~~i~~~l~vRl~k~ 148 (149)
T PHA02861 96 SMVDLCASLAEYWGGEDLPTNDSLQALKLMTILLSDDDYSFIELCLRVRLKKL 148 (149)
T ss_pred HHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHHHhc
Confidence 33445667777888655 2346899999999996 578888888777665
No 268
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=21.22 E-value=2.6e+02 Score=21.61 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=35.0
Q ss_pred HHhcCCCCHHHHHHHHHHHHccccccCcchhh----hhhHHHHHHhcCCCC
Q psy13759 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTV----DHLLPLFLSQLKDEC 68 (114)
Q Consensus 22 ~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~----~~llP~~~~LL~D~e 68 (114)
..-..|.++.+|...-..+.++.+.++++... +.++..|.+-+.|..
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~ 55 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA 55 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh
Confidence 34567889999999988888888888854332 467888888887653
No 269
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=21.16 E-value=2.3e+02 Score=20.25 Aligned_cols=52 Identities=13% Similarity=0.071 Sum_probs=31.7
Q ss_pred HhhHHHHHHhcCCCCH-HHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHH
Q psy13759 15 SKSIKRTQDLVADPNQ-HVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNI 75 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~-~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a 75 (114)
.+=+|.++.+.++++| .||.-+=.-++++ ..++.-+.-+++.++-++.|..+
T Consensus 49 ~~r~~eLk~lI~kk~W~~vrn~irgp~g~L---------r~dl~~l~~sl~p~dqk~a~~L~ 101 (142)
T TIGR03042 49 KDRLPELASLVAKEDWVFTRNLIHGPMGEV---------RREMTYLNQSLLPKDQKEALALA 101 (142)
T ss_pred HHhhHHHHHHHhhcchHHHHHHHhccHHHH---------HHHHHHHHHccCHHhHHHHHHHH
Confidence 3457788999999999 4665443333332 23444556666666666666554
No 270
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=21.01 E-value=8.7e+02 Score=24.53 Aligned_cols=73 Identities=12% Similarity=0.063 Sum_probs=52.7
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccc-cccCcch-----hhhhhHHHHHHhcCC-CChHHHHHHHHhHHHHHhhhC
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLS-PILGKHN-----TVDHLLPLFLSQLKD-ECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la-~~lg~e~-----~~~~llP~~~~LL~D-~e~EVR~~a~~~l~~~~~~l~ 87 (114)
+.+-+.+.....+++..||..+.+.+.++| +.+..+. ..+.++..|...++. ...|||-.++.-+..+...-+
T Consensus 1136 ~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~ 1215 (1780)
T PLN03076 1136 HVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV 1215 (1780)
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 445666777666777889999999888888 4444433 346788888887775 477999988888876655444
No 271
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=21.01 E-value=2.2e+02 Score=25.95 Aligned_cols=84 Identities=10% Similarity=-0.061 Sum_probs=51.2
Q ss_pred HHHhhHHHHHHhcCCCCHH-HHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhH
Q psy13759 13 FVSKSIKRTQDLVADPNQH-VKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQD 91 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~-VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i 91 (114)
+..++-|.+..++.|.+-. |=.-+.+ .++++...-.+-+..-++..+...+.=.-+++++-+.+.....+.+
T Consensus 544 lv~~l~~~~~~li~dqngNHviqKci~-------~~~~~~~~fif~~~~~~~~~is~~r~Gs~vvq~~le~~~~~~~~~~ 616 (777)
T COG5099 544 LVEELRPYCLQLIKDQNGNHVIQKCIE-------KFNKEKNQFIFDSINENLYDLSTHRYGSRVVQRCLENCNSEDKENL 616 (777)
T ss_pred HHHHhhhhhHHHHHhccCCHHHHHHHH-------hcCccccchHHHHHHhhhHhhhccccccHHHHHHHHhccHhHHHHH
Confidence 3667778888888887654 4333333 3344444334444445555555555666667777777777777777
Q ss_pred hhhHhHHHHHHH
Q psy13759 92 VSFKLGQVDRTS 103 (114)
Q Consensus 92 ~~~iLP~i~~l~ 103 (114)
+++|++....|+
T Consensus 617 ~~~Ii~~~~~L~ 628 (777)
T COG5099 617 VEEIISNSKYLS 628 (777)
T ss_pred HHHHHHHHHhhc
Confidence 777777776665
No 272
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=20.99 E-value=3e+02 Score=21.75 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=19.8
Q ss_pred hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHc
Q psy13759 10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMG 42 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~ 42 (114)
+.-..++++.++.+|++++ |-|.++...+.+
T Consensus 202 S~RLLKhIIrCYlRLsdnp--rar~aL~~~LP~ 232 (262)
T PF04078_consen 202 SPRLLKHIIRCYLRLSDNP--RAREALRQCLPD 232 (262)
T ss_dssp -HHHHHHHHHHHHHHTTST--THHHHHHHHS-G
T ss_pred ChhHHHHHHHHHHHHccCH--HHHHHHHHhCcH
Confidence 4456777888888887765 566666665554
No 273
>KOG2213|consensus
Probab=20.74 E-value=3.8e+02 Score=22.81 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=45.1
Q ss_pred HHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHH
Q psy13759 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVD 100 (114)
Q Consensus 22 ~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~ 100 (114)
-.++.|..-.||.-+-.-+..+|.- .....+.|.+.+||+ .+-+..+=+-... |.+++.++.+|.+.
T Consensus 67 ~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn-------k~sl~~Lf~~~~~-~D~~irek~l~fi~ 133 (460)
T KOG2213|consen 67 LDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN-------KASLTGLFGQIEV-GDEQIREKVLKFIR 133 (460)
T ss_pred hccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH-------HHHHHHHHhhhhh-hhHHHHHHHHHHHH
Confidence 3478899999999888888888854 445677888888888 3333333333333 45666677777664
No 274
>KOG1058|consensus
Probab=20.66 E-value=1.8e+02 Score=26.81 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=50.2
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
+...+++-++++|.-||.+.-..++.+-+ ....+-+.|.+.+-|+-..+=||.+|+-.+-.+-+.
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLckLkE----~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCKLKE----PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhhcCc----HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 45567788899999999998888777652 233467889999999999999999988776655444
No 275
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=20.44 E-value=3.9e+02 Score=20.28 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=8.6
Q ss_pred HHhhHHHHHHhcCCC
Q psy13759 14 VSKSIKRTQDLVADP 28 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~ 28 (114)
.+.+.|.+..++.|+
T Consensus 41 ~~~l~~~~~~l~~~~ 55 (322)
T cd07920 41 FDEILPHVVELMVDP 55 (322)
T ss_pred HHHHHHhHHHHhcCc
Confidence 344556666666665
No 276
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=20.37 E-value=2.4e+02 Score=28.16 Aligned_cols=49 Identities=20% Similarity=0.087 Sum_probs=34.9
Q ss_pred hHHHHHHh---cCCCChHHHHHHHHhHHHHHhhhChh--------hHhhhHhHHHHHHHH
Q psy13759 56 LLPLFLSQ---LKDECPEVRLNIISNLDCVNEVIGIQ--------QDVSFKLGQVDRTSF 104 (114)
Q Consensus 56 llP~~~~L---L~D~e~EVR~~a~~~l~~~~~~l~~~--------~i~~~iLP~i~~l~~ 104 (114)
-+|++..| +.|+.+|||..|+..+=.+-..-|.. .+.+-|.|.|..+..
T Consensus 1345 W~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~ 1404 (1780)
T PLN03076 1345 WFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRH 1404 (1780)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35555554 99999999999999887666655533 245568888877654
No 277
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=20.31 E-value=3.6e+02 Score=19.75 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759 27 DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 27 D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
|.--.+|.++=+.+.-+-...........++..+..=++| +.++|.-+..-+.+++..-+.+
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~ 99 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEE 99 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHH
Confidence 6667899999888888766666666677889999999999 9999999999999997766443
No 278
>KOG1078|consensus
Probab=20.09 E-value=3.4e+02 Score=25.03 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=58.2
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
...+.|.+..++..++..|=+.+|.++..+....+.+... -+..+.-+|+-..+-.|-+|...|.+++-..+
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence 3457888899999999999999999999998888877765 44555566677788889999999988887654
Done!