Query psy13759
Match_columns 114
No_of_seqs 101 out of 397
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 19:46:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 99.4 5.8E-13 2E-17 105.9 9.6 99 4-102 230-332 (588)
2 1b3u_A Protein (protein phosph 99.3 3.7E-12 1.3E-16 101.3 8.3 91 12-102 320-410 (588)
3 1ibr_B P95, importin beta-1 su 99.0 2E-09 6.8E-14 83.1 9.1 85 4-89 355-442 (462)
4 3l9t_A Putative uncharacterize 98.9 2.3E-09 7.9E-14 81.5 5.2 93 3-103 94-187 (240)
5 2qk2_A LP04448P; mini spindles 98.8 4.8E-08 1.6E-12 71.3 9.5 84 15-99 132-219 (242)
6 4fdd_A Transportin-1; heat rep 98.6 7.6E-08 2.6E-12 81.2 8.5 90 11-100 354-448 (852)
7 1qgr_A Protein (importin beta 98.6 1.2E-07 4.1E-12 78.7 9.6 90 11-100 361-457 (876)
8 2qk2_A LP04448P; mini spindles 98.6 1.4E-07 4.8E-12 68.8 8.7 86 14-99 54-142 (242)
9 4fdd_A Transportin-1; heat rep 98.5 6.5E-07 2.2E-11 75.6 10.1 77 13-89 397-476 (852)
10 2bpt_A Importin beta-1 subunit 98.5 6.8E-07 2.3E-11 74.1 9.8 90 11-100 364-460 (861)
11 2qk1_A Protein STU2; STU2P, XM 98.5 5.8E-07 2E-11 67.2 8.4 78 14-91 144-227 (249)
12 1te4_A Conserved protein MTH18 98.3 2.3E-06 7.9E-11 57.2 7.8 58 18-83 44-101 (131)
13 2vgl_B AP-2 complex subunit be 98.3 3.8E-06 1.3E-10 69.0 9.6 81 4-86 110-191 (591)
14 1ibr_B P95, importin beta-1 su 98.3 2.5E-06 8.5E-11 65.6 7.9 87 14-101 319-415 (462)
15 3ltj_A Alpharep-4; protein eng 98.3 7.2E-06 2.4E-10 57.5 9.7 58 17-82 108-165 (201)
16 2bpt_A Importin beta-1 subunit 98.2 7.1E-06 2.4E-10 68.0 10.4 73 14-87 409-485 (861)
17 3ltm_A Alpha-REP4; protein eng 98.2 9.7E-06 3.3E-10 57.2 9.7 59 17-83 113-171 (211)
18 2qk1_A Protein STU2; STU2P, XM 98.2 4.7E-06 1.6E-10 62.2 8.4 85 15-99 59-155 (249)
19 1u6g_C TIP120 protein, CAND1; 98.2 5.3E-06 1.8E-10 72.5 9.9 89 13-102 45-141 (1230)
20 1te4_A Conserved protein MTH18 98.2 1.3E-06 4.4E-11 58.4 4.8 58 16-81 73-130 (131)
21 1qgr_A Protein (importin beta 98.2 9.1E-06 3.1E-10 67.4 9.4 74 13-87 405-482 (876)
22 3ltm_A Alpha-REP4; protein eng 98.1 2.2E-05 7.6E-10 55.3 8.9 59 17-83 82-140 (211)
23 3ltj_A Alpharep-4; protein eng 98.1 3E-05 1E-09 54.2 9.1 59 17-83 77-135 (201)
24 1oyz_A Hypothetical protein YI 98.0 2.7E-05 9.1E-10 57.2 8.6 59 16-82 128-186 (280)
25 1u6g_C TIP120 protein, CAND1; 98.0 2.3E-05 7.9E-10 68.5 9.2 87 13-99 516-615 (1230)
26 1oyz_A Hypothetical protein YI 97.9 4.1E-05 1.4E-09 56.2 8.2 62 16-83 159-220 (280)
27 2jdq_A Importin alpha-1 subuni 97.9 2.6E-05 8.8E-10 60.0 7.3 87 16-102 276-369 (450)
28 4db8_A Armadillo-repeat protei 97.8 8.5E-05 2.9E-09 53.2 8.5 70 16-85 96-168 (252)
29 4hxt_A De novo protein OR329; 97.8 0.00011 3.8E-09 51.9 8.8 70 15-84 43-115 (252)
30 4db6_A Armadillo repeat protei 97.8 6.7E-05 2.3E-09 52.4 7.4 74 11-84 7-83 (210)
31 2of3_A ZYG-9; multifunctional 97.8 5.1E-05 1.8E-09 58.1 7.3 81 4-90 159-242 (266)
32 4db6_A Armadillo repeat protei 97.8 0.00017 5.7E-09 50.4 9.0 71 15-85 95-168 (210)
33 4db8_A Armadillo-repeat protei 97.7 0.00016 5.6E-09 51.6 8.6 73 14-86 52-127 (252)
34 2vgl_B AP-2 complex subunit be 97.7 0.00019 6.4E-09 58.9 9.9 85 13-102 83-168 (591)
35 4hxt_A De novo protein OR329; 97.7 0.00021 7.1E-09 50.5 8.7 70 16-85 86-158 (252)
36 1w63_A Adapter-related protein 97.7 8.1E-05 2.8E-09 61.6 7.2 80 3-85 130-209 (618)
37 2jdq_A Importin alpha-1 subuni 97.7 0.00017 5.7E-09 55.4 8.2 70 16-85 64-137 (450)
38 2vgl_A Adaptor protein complex 97.7 0.00012 4.2E-09 60.9 7.8 81 4-86 135-218 (621)
39 4gmo_A Putative uncharacterize 97.6 0.00022 7.6E-09 59.9 8.5 89 13-102 32-127 (684)
40 3l9t_A Putative uncharacterize 97.6 0.00015 5.2E-09 55.0 6.5 71 17-87 140-210 (240)
41 1wa5_B Importin alpha subunit; 97.6 0.00015 5E-09 58.0 6.6 73 13-85 127-203 (530)
42 4ffb_C Protein STU2; tubulin f 97.6 0.00012 4E-09 54.6 5.7 73 17-89 140-217 (278)
43 1wa5_B Importin alpha subunit; 97.5 0.00026 8.9E-09 56.5 7.4 74 15-88 340-416 (530)
44 1lrv_A LRV, leucine-rich repea 97.5 4.7E-05 1.6E-09 57.4 2.5 47 19-80 173-219 (244)
45 2iw3_A Elongation factor 3A; a 97.4 0.00027 9.2E-09 62.5 7.1 95 3-99 121-218 (986)
46 1wa5_C Importin alpha RE-expor 97.4 0.00079 2.7E-08 57.9 9.9 67 15-86 458-527 (960)
47 1w63_A Adapter-related protein 97.4 0.00054 1.8E-08 56.7 8.0 83 12-100 103-185 (618)
48 1lrv_A LRV, leucine-rich repea 97.4 5.1E-05 1.7E-09 57.2 1.4 46 20-80 150-195 (244)
49 1jdh_A Beta-catenin; beta-cate 97.4 0.00098 3.4E-08 52.2 8.9 71 15-85 226-296 (529)
50 4b8j_A Importin subunit alpha- 97.3 0.001 3.5E-08 52.8 8.1 73 13-85 114-190 (528)
51 4b8j_A Importin subunit alpha- 97.3 0.0013 4.5E-08 52.2 8.7 73 12-84 240-315 (528)
52 1xqr_A HSPBP1 protein; armadil 97.1 0.0018 6.2E-08 49.5 7.4 70 16-85 81-155 (296)
53 2z6h_A Catenin beta-1, beta-ca 97.0 0.0042 1.4E-07 51.0 9.5 70 16-85 224-293 (644)
54 3tjz_B Coatomer subunit gamma; 96.9 0.0049 1.7E-07 48.7 8.9 94 3-101 127-220 (355)
55 2z6g_A B-catenin; FULL-length, 96.8 0.0055 1.9E-07 52.0 8.9 71 15-85 359-429 (780)
56 3ul1_B Importin subunit alpha- 96.7 0.0078 2.7E-07 48.3 9.0 72 13-84 97-172 (510)
57 3tpo_A Importin subunit alpha- 96.7 0.0033 1.1E-07 50.6 6.7 75 15-89 334-411 (529)
58 3ul1_B Importin subunit alpha- 96.6 0.0083 2.8E-07 48.2 8.2 71 15-85 357-431 (510)
59 4ady_A RPN2, 26S proteasome re 96.6 0.0028 9.7E-08 56.0 5.8 65 17-85 613-677 (963)
60 1jdh_A Beta-catenin; beta-cate 96.6 0.0045 1.5E-07 48.4 6.4 69 14-82 458-528 (529)
61 1xqr_A HSPBP1 protein; armadil 96.5 0.011 3.6E-07 45.2 8.1 70 16-85 124-197 (296)
62 3now_A UNC-45 protein, SD10334 96.5 0.011 3.7E-07 51.4 8.8 75 16-90 495-571 (810)
63 3tpo_A Importin subunit alpha- 96.5 0.0091 3.1E-07 48.0 7.8 71 15-85 376-450 (529)
64 1wa5_C Importin alpha RE-expor 96.5 0.0076 2.6E-07 51.8 7.7 95 4-100 388-502 (960)
65 3nmw_A APC variant protein; AR 96.3 0.011 3.7E-07 46.2 6.9 72 17-88 264-338 (354)
66 2z6h_A Catenin beta-1, beta-ca 96.3 0.02 7E-07 46.9 8.8 73 15-87 456-530 (644)
67 2z6g_A B-catenin; FULL-length, 96.2 0.0079 2.7E-07 51.1 6.4 73 15-87 592-666 (780)
68 2vgl_A Adaptor protein complex 96.2 0.031 1.1E-06 46.4 9.7 91 10-100 323-414 (621)
69 2x1g_F Cadmus; transport prote 96.2 0.016 5.5E-07 49.4 8.1 89 11-99 454-551 (971)
70 3gs3_A Symplekin, LD45768P; he 96.2 0.028 9.5E-07 42.6 8.5 69 12-82 49-117 (257)
71 1xm9_A Plakophilin 1; armadill 96.0 0.028 9.7E-07 44.5 8.2 68 18-85 4-74 (457)
72 2x19_B Importin-13; nuclear tr 95.9 0.023 7.7E-07 48.2 7.7 73 13-88 487-560 (963)
73 1xm9_A Plakophilin 1; armadill 95.9 0.044 1.5E-06 43.4 9.0 90 14-103 42-136 (457)
74 2x1g_F Cadmus; transport prote 95.8 0.024 8.1E-07 48.4 7.4 73 13-88 502-576 (971)
75 3o2t_A Symplekin; heat repeat, 95.8 0.037 1.3E-06 44.3 7.9 70 12-83 59-128 (386)
76 2x19_B Importin-13; nuclear tr 95.7 0.037 1.3E-06 46.9 8.3 88 11-99 440-534 (963)
77 3ibv_A Exportin-T; karyopherin 95.7 0.018 6E-07 50.6 6.2 74 16-89 490-571 (980)
78 3m1i_C Exportin-1; heat repeat 95.5 0.04 1.4E-06 47.8 7.8 77 13-89 492-574 (1049)
79 4hat_C Exportin-1; heat repeat 95.5 0.024 8E-07 50.1 6.3 80 8-87 443-532 (1023)
80 1vsy_5 Proteasome activator BL 95.3 0.026 9E-07 49.9 6.2 75 10-86 795-875 (997)
81 3now_A UNC-45 protein, SD10334 95.2 0.071 2.4E-06 46.2 8.4 85 16-102 623-716 (810)
82 3opb_A SWI5-dependent HO expre 95.1 0.17 5.7E-06 43.9 10.4 68 16-83 606-682 (778)
83 3nmz_A APC variant protein; pr 95.0 0.054 1.9E-06 43.8 6.7 70 16-85 379-451 (458)
84 3tjz_B Coatomer subunit gamma; 94.8 0.13 4.5E-06 40.5 8.1 81 16-102 104-184 (355)
85 2iw3_A Elongation factor 3A; a 94.7 0.17 5.7E-06 44.9 9.2 91 11-103 90-184 (986)
86 3tt9_A Plakophilin-2; cell adh 94.6 0.076 2.6E-06 39.4 6.1 68 17-84 9-81 (233)
87 4ffb_C Protein STU2; tubulin f 94.6 0.23 7.9E-06 36.4 8.8 85 15-99 54-148 (278)
88 3nmw_A APC variant protein; AR 94.5 0.11 3.7E-06 40.5 7.0 70 15-84 213-292 (354)
89 3tt9_A Plakophilin-2; cell adh 94.4 0.22 7.7E-06 36.8 8.2 69 16-84 52-124 (233)
90 4hat_C Exportin-1; heat repeat 94.3 0.11 3.9E-06 45.8 7.4 79 12-90 491-575 (1023)
91 3m1i_C Exportin-1; heat repeat 94.1 0.27 9.4E-06 42.6 9.3 76 12-87 536-621 (1049)
92 2of3_A ZYG-9; multifunctional 94.0 0.4 1.4E-05 36.4 9.1 77 14-96 130-206 (266)
93 3l6x_A Catenin delta-1; cateni 93.8 0.19 6.6E-06 42.0 7.6 87 16-102 90-182 (584)
94 3ibv_A Exportin-T; karyopherin 93.8 0.1 3.5E-06 45.7 6.1 84 5-88 425-528 (980)
95 3l6x_A Catenin delta-1; cateni 93.6 0.28 9.7E-06 41.0 8.3 72 13-84 45-119 (584)
96 3oc3_A Helicase MOT1, MOT1; re 93.4 0.2 6.9E-06 42.9 6.9 58 23-83 270-327 (800)
97 3opb_A SWI5-dependent HO expre 92.9 0.36 1.2E-05 41.9 7.9 74 17-90 458-536 (778)
98 3nmz_A APC variant protein; pr 92.8 0.54 1.8E-05 37.9 8.5 68 17-84 244-316 (458)
99 2b6c_A Hypothetical protein EF 92.6 0.53 1.8E-05 34.1 7.6 74 17-95 125-198 (220)
100 3b2a_A TON_1937, putative unch 91.6 0.42 1.5E-05 36.4 6.0 71 15-85 149-219 (265)
101 4ady_A RPN2, 26S proteasome re 91.3 0.39 1.3E-05 42.6 6.4 74 20-98 582-655 (963)
102 2db0_A 253AA long hypothetical 90.5 1.5 5E-05 32.8 7.9 71 15-87 143-213 (253)
103 3gjx_A Exportin-1; transport, 88.0 0.99 3.4E-05 40.2 6.4 82 6-87 467-558 (1073)
104 4gmo_A Putative uncharacterize 87.6 0.43 1.5E-05 39.8 3.7 49 17-65 77-129 (684)
105 3u0r_A Apoptosis inhibitor 5; 87.2 1.4 4.8E-05 36.5 6.4 57 27-85 39-95 (507)
106 4atg_A TAF6; transcription, TF 86.8 6.4 0.00022 28.5 9.2 90 10-103 81-177 (196)
107 3oc3_A Helicase MOT1, MOT1; re 86.2 1.5 5E-05 37.8 6.1 65 29-100 241-305 (800)
108 3b2a_A TON_1937, putative unch 85.8 4 0.00014 31.0 7.9 74 10-87 109-182 (265)
109 2db0_A 253AA long hypothetical 85.5 5.3 0.00018 29.8 8.2 68 14-84 179-246 (253)
110 3jxy_A Alkylpurine DNA glycosy 85.1 2.6 8.8E-05 30.6 6.4 70 17-91 132-201 (232)
111 3gjx_A Exportin-1; transport, 83.4 3 0.0001 37.2 7.2 78 12-89 517-600 (1073)
112 3ut4_A CTHE_2751, putative unc 83.3 4.7 0.00016 27.7 6.7 77 14-103 29-105 (134)
113 1lsh_A Lipovitellin (LV-1N, LV 82.7 2.3 7.8E-05 37.5 6.1 51 27-82 489-541 (1056)
114 3u0r_A Apoptosis inhibitor 5; 77.4 13 0.00043 30.8 8.4 67 13-83 62-128 (507)
115 3gs3_A Symplekin, LD45768P; he 76.9 21 0.0007 26.6 9.3 86 13-102 13-98 (257)
116 3ldz_A STAM-1, signal transduc 72.9 17 0.00057 24.4 7.0 77 13-89 39-119 (140)
117 3a6p_A Exportin-5; exportin-5, 71.7 11 0.00038 33.5 7.3 63 26-88 542-617 (1204)
118 3grl_A General vesicular trans 70.2 12 0.00041 31.8 6.9 68 17-84 123-195 (651)
119 1ho8_A Vacuolar ATP synthase s 67.5 7.4 0.00025 31.9 4.9 55 29-83 418-475 (480)
120 3o2t_A Symplekin; heat repeat, 62.3 53 0.0018 25.9 8.8 85 15-103 25-109 (386)
121 3g2s_A C-terminal fragment of 55.0 47 0.0016 22.6 6.8 75 14-88 46-130 (149)
122 1t06_A Hypothetical protein; s 52.1 63 0.0021 23.2 8.7 67 19-85 111-181 (235)
123 1x5b_A Signal transducing adap 49.7 60 0.002 22.2 7.9 76 14-89 50-130 (163)
124 1vsy_4 Proteasome activator BL 49.4 1.1E+02 0.0039 26.2 9.4 90 11-100 334-429 (799)
125 1vsy_5 Proteasome activator BL 49.4 31 0.001 30.5 5.9 62 26-88 306-369 (997)
126 1juq_A ADP-ribosylation factor 46.6 69 0.0024 22.1 6.9 76 14-89 48-133 (171)
127 1mhq_A ADP-ribosylation factor 46.0 66 0.0023 21.7 6.9 75 14-88 36-120 (148)
128 3a6p_A Exportin-5; exportin-5, 44.5 61 0.0021 28.8 7.1 72 12-85 89-163 (1204)
129 3ebb_A Phospholipase A2-activa 44.2 65 0.0022 24.3 6.4 69 15-83 190-262 (304)
130 2b6c_A Hypothetical protein EF 43.4 24 0.00083 25.1 3.8 33 15-47 158-190 (220)
131 3zyq_A Hepatocyte growth facto 38.3 1.1E+02 0.0037 21.9 7.5 76 14-89 43-123 (226)
132 1dvp_A HRS, hepatocyte growth 33.9 1E+02 0.0036 21.7 5.9 75 14-88 40-119 (220)
133 1t06_A Hypothetical protein; s 32.2 47 0.0016 23.9 3.8 37 10-46 145-181 (235)
134 2jtt_C Calcyclin-binding prote 30.8 52 0.0018 17.3 2.8 26 17-42 8-33 (35)
135 3ldz_A STAM-1, signal transduc 28.6 25 0.00086 23.5 1.7 47 17-63 86-132 (140)
136 2qzg_A Conserved uncharacteriz 28.4 1.2E+02 0.0041 19.4 8.6 39 5-43 7-47 (94)
137 1vdy_A Hypothetical protein (R 28.4 79 0.0027 21.4 4.2 35 11-45 44-78 (140)
138 3grl_A General vesicular trans 27.9 2.8E+02 0.0095 23.5 9.9 42 55-97 122-163 (651)
139 3jxy_A Alkylpurine DNA glycosy 27.9 52 0.0018 23.5 3.4 60 15-81 165-224 (232)
140 3nke_A Protein YGBT; crispr, C 24.1 86 0.0029 22.5 3.9 40 57-103 138-181 (200)
141 1lsh_A Lipovitellin (LV-1N, LV 23.9 3.1E+02 0.011 24.0 8.1 66 18-89 514-581 (1056)
142 3god_A CAS1; crispr, metallonu 22.3 1.5E+02 0.0051 22.6 5.2 59 33-105 263-323 (328)
143 1elk_A Target of MYB1; superhe 21.0 2E+02 0.0067 19.3 7.5 75 14-88 51-134 (157)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.42 E-value=5.8e-13 Score=105.91 Aligned_cols=99 Identities=17% Similarity=0.174 Sum_probs=88.7
Q ss_pred hhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 4 l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
++..++++.....++|.+..+.+|++|+||.++++.++.++..+|++.....++|.+.++++|++++||.+++..+..++
T Consensus 230 l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 309 (588)
T 1b3u_A 230 IAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC 309 (588)
T ss_dssp HHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 34456777778889999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred hhhChh----hHhhhHhHHHHHH
Q psy13759 84 EVIGIQ----QDVSFKLGQVDRT 102 (114)
Q Consensus 84 ~~l~~~----~i~~~iLP~i~~l 102 (114)
+.+|++ ...+.++|.+.++
T Consensus 310 ~~~~~~~~~~~~~~~l~p~l~~~ 332 (588)
T 1b3u_A 310 ENLSADCRENVIMSQILPCIKEL 332 (588)
T ss_dssp HTSCTTTHHHHHHHTHHHHHHHH
T ss_pred HHhChhhhhhHHHHHHHHHHHHH
Confidence 999876 4567888888654
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.32 E-value=3.7e-12 Score=101.27 Aligned_cols=91 Identities=68% Similarity=0.979 Sum_probs=85.0
Q ss_pred HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhH
Q psy13759 12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQD 91 (114)
Q Consensus 12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i 91 (114)
.....++|.+..+.+|++|+||.+++..++.+++.+|++.....++|.+..+++|++++||.+++..+..+++.+|.+..
T Consensus 320 ~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 399 (588)
T 1b3u_A 320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL 399 (588)
T ss_dssp HHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHH
Confidence 56788999999999999999999999999999999999888889999999999999999999999999999999998887
Q ss_pred hhhHhHHHHHH
Q psy13759 92 VSFKLGQVDRT 102 (114)
Q Consensus 92 ~~~iLP~i~~l 102 (114)
.+.++|.+.++
T Consensus 400 ~~~~lp~l~~~ 410 (588)
T 1b3u_A 400 SQSLLPAIVEL 410 (588)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78899988764
No 3
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.98 E-value=2e-09 Score=83.07 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=72.5
Q ss_pred hhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc---hhhhhhHHHHHHhcCCCChHHHHHHHHhHH
Q psy13759 4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH---NTVDHLLPLFLSQLKDECPEVRLNIISNLD 80 (114)
Q Consensus 4 l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e---~~~~~llP~~~~LL~D~e~EVR~~a~~~l~ 80 (114)
+++.++ +.....++|.+....+|++|++|.++...++.+++..+.+ .....++|.++.+++|++++||.+++..+.
T Consensus 355 l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~ 433 (462)
T 1ibr_B 355 LATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG 433 (462)
T ss_dssp HHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 445555 5667789999999999999999999999999999755432 223679999999999999999999999999
Q ss_pred HHHhhhChh
Q psy13759 81 CVNEVIGIQ 89 (114)
Q Consensus 81 ~~~~~l~~~ 89 (114)
.+++.++++
T Consensus 434 ~~~~~~~~~ 442 (462)
T 1ibr_B 434 RICELLPEA 442 (462)
T ss_dssp HHHHHGGGG
T ss_pred HHHHhcccc
Confidence 999999874
No 4
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.86 E-value=2.3e-09 Score=81.46 Aligned_cols=93 Identities=15% Similarity=0.105 Sum_probs=74.1
Q ss_pred chhccCChhHHHHhhHHHHHH-hcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHH
Q psy13759 3 LLLTINSDGNFVSKSIKRTQD-LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81 (114)
Q Consensus 3 ~l~~~~~~~~~~~~ilP~l~~-L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~ 81 (114)
+||.. + ....++|.++. ++.|.+|+||+++|..+.+++...+++. .+|.+...++|++++||..|+...-.
T Consensus 94 lLg~~-~---~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~----~l~~~~~W~~d~n~~VRR~Ase~~rp 165 (240)
T 3l9t_A 94 LFGYL-S---KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----ALPIIDEWLKSSNLHTRRAATEGLRI 165 (240)
T ss_dssp HHHHT-T---TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT----THHHHHHHHHCSSHHHHHHHHHHTCS
T ss_pred HHHhc-c---CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH----HHHHHHHHhcCCCHHHHHHHHHhhHH
Confidence 45555 3 23679999998 9999999999999999999998667664 67899999999999999999998866
Q ss_pred HHhhhChhhHhhhHhHHHHHHH
Q psy13759 82 VNEVIGIQQDVSFKLGQVDRTS 103 (114)
Q Consensus 82 ~~~~l~~~~i~~~iLP~i~~l~ 103 (114)
.+.......-.+.++|++..|.
T Consensus 166 W~~~~~~k~dp~~ll~iL~~L~ 187 (240)
T 3l9t_A 166 WTNRPYFKENPNEAIRRIADLK 187 (240)
T ss_dssp GGGSTTTTTCHHHHHHHHHTTT
T ss_pred HhccchhhcCHHHHHHHHHHhc
Confidence 6655333344566788887664
No 5
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.77 E-value=4.8e-08 Score=71.31 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=69.3
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc----hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH----NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ 90 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e----~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~ 90 (114)
..++|.+....+|++|+||..+...+..+....+++ .....++|.+..+++|+.++||.++...+..++..+|.+.
T Consensus 132 ~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~ 211 (242)
T 2qk2_A 132 EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKA 211 (242)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHH
Confidence 568888888889999999999999999977666544 2335799999999999999999999999999999999865
Q ss_pred HhhhHhHHH
Q psy13759 91 DVSFKLGQV 99 (114)
Q Consensus 91 i~~~iLP~i 99 (114)
+ +.++|-+
T Consensus 212 ~-~~~l~~L 219 (242)
T 2qk2_A 212 V-TPLLADV 219 (242)
T ss_dssp H-GGGGTTS
T ss_pred H-HHHHHhc
Confidence 5 3344444
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.65 E-value=7.6e-08 Score=81.24 Aligned_cols=90 Identities=13% Similarity=0.052 Sum_probs=74.2
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcch--hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHN--TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~--~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
+.....++|.+..+.+|++|++|.+++..++.+++..++.. ....++|.+..+++|++++||.+++..+..+++.++.
T Consensus 354 ~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 433 (852)
T 4fdd_A 354 DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS 433 (852)
T ss_dssp GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 45667899999999999999999999999999998776532 3367999999999999999999999999999998865
Q ss_pred h---hHhhhHhHHHH
Q psy13759 89 Q---QDVSFKLGQVD 100 (114)
Q Consensus 89 ~---~i~~~iLP~i~ 100 (114)
+ .....++|.+.
T Consensus 434 ~~~~~~~~~ll~~L~ 448 (852)
T 4fdd_A 434 QPPDTYLKPLMTELL 448 (852)
T ss_dssp SCTTTTHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 3 23344455443
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.64 E-value=1.2e-07 Score=78.71 Aligned_cols=90 Identities=12% Similarity=0.090 Sum_probs=74.0
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcch---hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHN---TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~---~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
+.....++|.+....+|++|+||.+++..++.+++..+++. ....++|.++..++|+.++||.+++..+..+++..+
T Consensus 361 ~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 361 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence 34567899999999999999999999999999998877432 235789999999999999999999999999999987
Q ss_pred hh----hHhhhHhHHHH
Q psy13759 88 IQ----QDVSFKLGQVD 100 (114)
Q Consensus 88 ~~----~i~~~iLP~i~ 100 (114)
+. ...+.++|.+.
T Consensus 441 ~~~~~~~~l~~~l~~l~ 457 (876)
T 1qgr_A 441 EAAINDVYLAPLLQCLI 457 (876)
T ss_dssp GGTSSTTTHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHH
Confidence 53 23455555543
No 8
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.64 E-value=1.4e-07 Score=68.81 Aligned_cols=86 Identities=13% Similarity=0.202 Sum_probs=71.4
Q ss_pred HHhhHHHHHHhcC-CCCHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh
Q psy13759 14 VSKSIKRTQDLVA-DPNQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ 90 (114)
Q Consensus 14 ~~~ilP~l~~L~~-D~s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~ 90 (114)
..++++.+..++. |++.+||..++..++.++..+|++... ..++|.++..++|..+.||.++...+..+++..+.+.
T Consensus 54 ~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ 133 (242)
T 2qk2_A 54 YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEA 133 (242)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 3568888888884 999999999999999999988876433 5789999999999999999999999999999888766
Q ss_pred HhhhHhHHH
Q psy13759 91 DVSFKLGQV 99 (114)
Q Consensus 91 i~~~iLP~i 99 (114)
+.+.++..+
T Consensus 134 ll~~l~~~l 142 (242)
T 2qk2_A 134 QQESIVESL 142 (242)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 655555544
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.49 E-value=6.5e-07 Score=75.56 Aligned_cols=77 Identities=13% Similarity=0.153 Sum_probs=68.7
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc---hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH---NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e---~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
....++|.+..+.+|++++||.+++..++.+++.++.+ .....++|.+++.++|++++||.+++..+..+++..+.+
T Consensus 397 ~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~ 476 (852)
T 4fdd_A 397 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE 476 (852)
T ss_dssp GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 45679999999999999999999999999999887753 344679999999999999999999999999999988865
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.48 E-value=6.8e-07 Score=74.07 Aligned_cols=90 Identities=11% Similarity=0.105 Sum_probs=74.0
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchh---hhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNT---VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~---~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
+.....++|.+...++|.+|++|.+++..++.+++..+++.. ...++|.+.+.++|+.+.||.+++..+..++..++
T Consensus 364 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 364 NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh
Confidence 445677899999999999999999999999999987763332 24689999999999999999999999999999987
Q ss_pred hh----hHhhhHhHHHH
Q psy13759 88 IQ----QDVSFKLGQVD 100 (114)
Q Consensus 88 ~~----~i~~~iLP~i~ 100 (114)
++ ...+.++|.+.
T Consensus 444 ~~~~~~~~~~~~l~~l~ 460 (861)
T 2bpt_A 444 ESIDPQQHLPGVVQACL 460 (861)
T ss_dssp GGSCTTTTHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHH
Confidence 53 34566677654
No 11
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.48 E-value=5.8e-07 Score=67.17 Aligned_cols=78 Identities=9% Similarity=0.184 Sum_probs=67.9
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc--c---hhh-hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGK--H---NTV-DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~--e---~~~-~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
...+++.+...+++++|+||..+...+..++...+. + ... ..++|.+.++++|+.++||.++...+..++..+|
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 346788888888999999999999999999988775 2 233 6899999999999999999999999999999999
Q ss_pred hhhH
Q psy13759 88 IQQD 91 (114)
Q Consensus 88 ~~~i 91 (114)
.+.+
T Consensus 224 ~~~~ 227 (249)
T 2qk1_A 224 MNTF 227 (249)
T ss_dssp SGGG
T ss_pred HHHH
Confidence 8654
No 12
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.33 E-value=2.3e-06 Score=57.16 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=51.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 18 IKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 18 lP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
+|.+..+++|++|.||..++..++.+.. ...+|.+..+++|++++||.+++..+..++
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG 101 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4888888999999999999999998863 346899999999999999999999998876
No 13
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.28 E-value=3.8e-06 Score=69.02 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=67.7
Q ss_pred hhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh-hhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759 4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV-DHLLPLFLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 4 l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~-~~llP~~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
||... ..++...++|.+..++.|+++.||..++..+..+++.- ++... ..++|.+.++|+|+++.||.+|+..+..+
T Consensus 110 L~~i~-~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 110 MGCIR-VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEI 187 (591)
T ss_dssp HHTCC-SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHH
T ss_pred HHcCC-hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 44444 34456778999999999999999999999999999844 44444 47999999999999999999999999999
Q ss_pred Hhhh
Q psy13759 83 NEVI 86 (114)
Q Consensus 83 ~~~l 86 (114)
++.-
T Consensus 188 ~~~~ 191 (591)
T 2vgl_B 188 SESH 191 (591)
T ss_dssp TTSC
T ss_pred HhhC
Confidence 8754
No 14
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.28 E-value=2.5e-06 Score=65.60 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=68.7
Q ss_pred HHhhHHHHHHhcC-------CCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 14 VSKSIKRTQDLVA-------DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 14 ~~~ilP~l~~L~~-------D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
...++|.+..... |.+|.+|.+++..+..++..+| +.....++|.+.+.++|+++.+|.+++..+..+++..
T Consensus 319 ~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~ 397 (462)
T 1ibr_B 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP 397 (462)
T ss_dssp HHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred hhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCC
Confidence 3567887755442 5689999999999999999999 4556789999999999999999999999999999866
Q ss_pred Chhh---HhhhHhHHHHH
Q psy13759 87 GIQQ---DVSFKLGQVDR 101 (114)
Q Consensus 87 ~~~~---i~~~iLP~i~~ 101 (114)
+++. ....++|.+.+
T Consensus 398 ~~~~~~~~l~~~~~~l~~ 415 (462)
T 1ibr_B 398 EPSQLKPLVIQAMPTLIE 415 (462)
T ss_dssp CTTTTCTTTTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 5332 23456665543
No 15
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.27 E-value=7.2e-06 Score=57.47 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=35.2
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
.+|.+..+++|++|.||..++..++.+.. ...+|.+..+++|++++||.+++..+..+
T Consensus 108 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 108 AVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 44555555566666666666666655532 24556666666666666666666666655
No 16
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.24 E-value=7.1e-06 Score=67.96 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=65.1
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc----hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH----NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e----~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
...++|.+....+|++++||.+++..++.++..++.+ .....++|.+++.++|+ ++||.+++..+..+++..+
T Consensus 409 l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~ 485 (861)
T 2bpt_A 409 VHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLA 485 (861)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcc
Confidence 4568899999999999999999999999999888764 35678999999999998 9999999999999999886
No 17
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.24 E-value=9.7e-06 Score=57.19 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=37.1
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
.+|.+..+++|++|.||..++..++.+.. ...+|.+..+++|++++||.+++..+..+.
T Consensus 113 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 113 AVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 45555566666666666666666666532 235666667777777777777776666653
No 18
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.23 E-value=4.7e-06 Score=62.21 Aligned_cols=85 Identities=16% Similarity=0.130 Sum_probs=71.9
Q ss_pred HhhHHHHHHhc-CCCCHHHHHHHHHHHHccccccC-cchh---hhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh---
Q psy13759 15 SKSIKRTQDLV-ADPNQHVKSALASVIMGLSPILG-KHNT---VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI--- 86 (114)
Q Consensus 15 ~~ilP~l~~L~-~D~s~~VR~~~a~~l~~la~~lg-~e~~---~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l--- 86 (114)
.+++..+.... +|.+..||..++..++.+|+.++ ++.. ...++|.++..++|..+.||.++...+..+++.+
T Consensus 59 ~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~ 138 (249)
T 2qk1_A 59 SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL 138 (249)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc
Confidence 45777777777 89999999999999999999998 6543 3578999999999999999999999999999999
Q ss_pred ---C-hhhHhhhHhHHH
Q psy13759 87 ---G-IQQDVSFKLGQV 99 (114)
Q Consensus 87 ---~-~~~i~~~iLP~i 99 (114)
+ .+.+.+.+++.+
T Consensus 139 ~~~~~l~~ll~~l~~~l 155 (249)
T 2qk1_A 139 ASSGRNEDMLKDILEHM 155 (249)
T ss_dssp CTTCTTHHHHHHHHHHT
T ss_pred ccCCcHHHHHHHHHHHH
Confidence 5 556666666555
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.23 E-value=5.3e-06 Score=72.53 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=74.6
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh---
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ--- 89 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~--- 89 (114)
..+.++|.+...+.|++|+||.+++..+..+++.++. .....++|.+...+.|++++||.+++..+..++..++++
T Consensus 45 ~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 45 SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 3457888888888899999999999999999988876 455789999999999999999999999999999999875
Q ss_pred -----hHhhhHhHHHHHH
Q psy13759 90 -----QDVSFKLGQVDRT 102 (114)
Q Consensus 90 -----~i~~~iLP~i~~l 102 (114)
...+.++|.+.+.
T Consensus 124 ~~~~~~~~~~llp~L~~~ 141 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSA 141 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 2567788877653
No 20
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.23 E-value=1.3e-06 Score=58.42 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=50.1
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHH
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~ 81 (114)
..+|.+..+++|++|.||.+++..++.+.. ...+|.+.++++|++++||.+++..+.+
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 357778888899999999999999998862 3578999999999999999999988754
No 21
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.16 E-value=9.1e-06 Score=67.43 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=65.1
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc----hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH----NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e----~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
....++|.+....+|++++||.+++..++.+++.++.. .....++|.+++.++|+ +.||.+++..+..+++..+
T Consensus 405 ~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhh
Confidence 45668999999999999999999999999999888763 44568999999999996 9999999999999998765
No 22
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.08 E-value=2.2e-05 Score=55.30 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=36.0
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
.+|.+..+++|+++.||..++..++.++. ...+|.+.++++|++++||..++..+..++
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 44555555566666666666666655542 235566677777777777777777666653
No 23
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.06 E-value=3e-05 Score=54.20 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=35.7
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
.+|.+..+++|+++.||..++..+..+.. ...+|.+..+++|++++||..++..+..+.
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 44555555566666666666666655432 235566666677777777777766666554
No 24
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.02 E-value=2.7e-05 Score=57.16 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=33.3
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
.++|.+..+++|++|.||.+++..++.++. ...+|.+..+++|++++||..++..+..+
T Consensus 128 ~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 128 KIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 345555555666666666666666655542 12456666666666666666666666554
No 25
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.00 E-value=2.3e-05 Score=68.50 Aligned_cols=87 Identities=20% Similarity=0.180 Sum_probs=71.8
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc-------c--hhhhhhHHHHHHhc--CCCChHHHHHHHHhHHH
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGK-------H--NTVDHLLPLFLSQL--KDECPEVRLNIISNLDC 81 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~-------e--~~~~~llP~~~~LL--~D~e~EVR~~a~~~l~~ 81 (114)
....++|.+....+|++|+||..+...+.++++.+|. + ...+.++|.+++.+ .|.+++||.+++..+..
T Consensus 516 ~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~ 595 (1230)
T 1u6g_C 516 HVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 595 (1230)
T ss_dssp HHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999988887 2 23468999999999 88999999999999999
Q ss_pred HHhhhChhh--HhhhHhHHH
Q psy13759 82 VNEVIGIQQ--DVSFKLGQV 99 (114)
Q Consensus 82 ~~~~l~~~~--i~~~iLP~i 99 (114)
++...|... ....++|.+
T Consensus 596 L~~~~g~~~~~~~~~~l~~L 615 (1230)
T 1u6g_C 596 IICNLGDNLGSDLPNTLQIF 615 (1230)
T ss_dssp HHHHTGGGCCTHHHHHHHHH
T ss_pred HHHHhCchhhhhHHHHHHHH
Confidence 999988652 224445544
No 26
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.93 E-value=4.1e-05 Score=56.16 Aligned_cols=62 Identities=26% Similarity=0.268 Sum_probs=53.4
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
..+|.+..+++|+++.||..++..++.++. .....+|.+..+++|++++||..++..+..++
T Consensus 159 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 159 ATIPLLINLLKDPNGDVRNWAAFAININKY------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhcc------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 378888899999999999999999988742 12467899999999999999999999998775
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.92 E-value=2.6e-05 Score=59.96 Aligned_cols=87 Identities=10% Similarity=0.053 Sum_probs=67.2
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh--
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-- 90 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~-- 90 (114)
.++|.+..+++|++|+||..++..++.++..-. .......++|.++++++|++++||..++..+..++...+++.
T Consensus 276 ~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 355 (450)
T 2jdq_A 276 SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIK 355 (450)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 589999999999999999999999999985221 112235799999999999999999999999999987544432
Q ss_pred --HhhhHhHHHHHH
Q psy13759 91 --DVSFKLGQVDRT 102 (114)
Q Consensus 91 --i~~~iLP~i~~l 102 (114)
+...++|.+.++
T Consensus 356 ~l~~~~~i~~L~~l 369 (450)
T 2jdq_A 356 YLVELGCIKPLCDL 369 (450)
T ss_dssp HHHHHTCHHHHHHG
T ss_pred HHHHCCCHHHHHHH
Confidence 223455655444
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.85 E-value=8.5e-05 Score=53.16 Aligned_cols=70 Identities=10% Similarity=0.115 Sum_probs=60.3
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc---chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~---e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
..+|.+..++++.++.||..++..+..++..-.. .......+|.++++++|++++||..++..+..++..
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 3899999999999999999999999999854432 233346999999999999999999999999999863
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.83 E-value=0.00011 Score=51.93 Aligned_cols=70 Identities=11% Similarity=0.117 Sum_probs=59.5
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
..++|.+..++++.++.||..++..+..++..-. ........+|.++++++|++++||..++..+..++.
T Consensus 43 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 115 (252)
T 4hxt_A 43 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 115 (252)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 3589999999999999999999999999985311 223334689999999999999999999999999985
No 30
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.82 E-value=6.7e-05 Score=52.40 Aligned_cols=74 Identities=8% Similarity=0.078 Sum_probs=57.5
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
.......-|.+..+.+++++.||..++..+..++..-. ........+|.++++|++++++||..++..+..++.
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 33445577888999999999999999999999984322 122334689999999999999999999999999874
No 31
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.82 E-value=5.1e-05 Score=58.11 Aligned_cols=81 Identities=19% Similarity=0.009 Sum_probs=66.8
Q ss_pred hhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhH---HHHHHhcCCCChHHHHHHHHhHH
Q psy13759 4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLL---PLFLSQLKDECPEVRLNIISNLD 80 (114)
Q Consensus 4 l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~ll---P~~~~LL~D~e~EVR~~a~~~l~ 80 (114)
+..+.||+. +.+.+....+.+|||+|..+.+.+..+-+..|.. ....+ |.+.+++.|.+.+||.+|++.+.
T Consensus 159 l~~v~~~~~----v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lv 232 (266)
T 2of3_A 159 LSDVVGPLK----MTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLKSLSVEKTVAPFVGDKDVNVRNAAINVLV 232 (266)
T ss_dssp HHHHHCHHH----HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHCCHHH----HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--ccccccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344445444 4555555678899999999999999999999987 34578 99999999999999999999999
Q ss_pred HHHhhhChhh
Q psy13759 81 CVNEVIGIQQ 90 (114)
Q Consensus 81 ~~~~~l~~~~ 90 (114)
.+-..+|...
T Consensus 233 e~y~~~Gd~v 242 (266)
T 2of3_A 233 ACFKFEGDQM 242 (266)
T ss_dssp HHHHHHTTHH
T ss_pred HHHHHhhHHH
Confidence 9999999864
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.79 E-value=0.00017 Score=50.36 Aligned_cols=71 Identities=10% Similarity=0.119 Sum_probs=60.3
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc---chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~---e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
...+|.+..++++.+++||..++..+..++..-.. .......+|.+++++++++++||..++..+..++..
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 34789999999999999999999999999953221 223357899999999999999999999999999874
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.74 E-value=0.00016 Score=51.64 Aligned_cols=73 Identities=10% Similarity=0.083 Sum_probs=60.5
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
...++|.+..++++.++.||..++..+..++..-. ........+|.+++++++++++||..++..+..++..-
T Consensus 52 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 127 (252)
T 4db8_A 52 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Confidence 34588999999999999999999999999985322 22223468999999999999999999999999987643
No 34
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.74 E-value=0.00019 Score=58.93 Aligned_cols=85 Identities=16% Similarity=0.124 Sum_probs=65.4
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHh
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDV 92 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~ 92 (114)
..-.+++.+++.++|+++.||..+...++.+. .......++|.+.++++|+++.||..|+..+.++++ .+++.+.
T Consensus 83 ~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~-~~p~~~~ 157 (591)
T 2vgl_B 83 MAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD-INAQMVE 157 (591)
T ss_dssp HHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH-SSCCCHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh-hChhhcc
Confidence 34446788888899999999999988887775 333456789999999999999999999999999998 4455443
Q ss_pred h-hHhHHHHHH
Q psy13759 93 S-FKLGQVDRT 102 (114)
Q Consensus 93 ~-~iLP~i~~l 102 (114)
. .++|.+.++
T Consensus 158 ~~~~~~~l~~l 168 (591)
T 2vgl_B 158 DQGFLDSLRDL 168 (591)
T ss_dssp HHHHHHHHHHT
T ss_pred cccHHHHHHHH
Confidence 2 455655543
No 35
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.72 E-value=0.00021 Score=50.52 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=59.5
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
.++|.+..+++|.++.||..++..+..++..-+ ........+|.++++++|++++||..++..+..++..
T Consensus 86 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 86 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 479999999999999999999999999995322 2223346899999999999999999999999999864
No 36
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.70 E-value=8.1e-05 Score=61.65 Aligned_cols=80 Identities=14% Similarity=0.105 Sum_probs=65.7
Q ss_pred chhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759 3 LLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 3 ~l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
.||.+-++ +....++|.+..+++|+++.||.+++..+..+...-+ +. .+.++|.+..+++|.++.|+.+++..+..+
T Consensus 130 ~L~~i~~~-~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~~-v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i 206 (618)
T 1w63_A 130 TLGCMGSS-EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-EL-MEMFLPATKNLLNEKNHGVLHTSVVLLTEM 206 (618)
T ss_dssp HHHHHCCH-HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-GG-GGGGGGGTTTSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh-HH-HHHHHHHHHHHhCCCCHhHHHHHHHHHHHH
Confidence 45555554 4567789999999999999999999999999987543 32 347899999999999999999999999998
Q ss_pred Hhh
Q psy13759 83 NEV 85 (114)
Q Consensus 83 ~~~ 85 (114)
++.
T Consensus 207 ~~~ 209 (618)
T 1w63_A 207 CER 209 (618)
T ss_dssp CCS
T ss_pred HHh
Confidence 764
No 37
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.67 E-value=0.00017 Score=55.38 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=58.9
Q ss_pred hhHHHHHHhcCCC-CHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 16 KSIKRTQDLVADP-NQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 16 ~ilP~l~~L~~D~-s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
.++|.+..++++. ++.||..++..+..++..-. +.......+|.++++++|++++||..++..+..++..
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~ 137 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGD 137 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccC
Confidence 6899998888887 89999999999999986322 2223357999999999999999999999999998864
No 38
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.66 E-value=0.00012 Score=60.91 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=67.3
Q ss_pred hhccCChhHHHHhhHHHHHHhc--CCCCHHHHHHHHHHHHccccccCcchhh-hhhHHHHHHhcCCCChHHHHHHHHhHH
Q psy13759 4 LLTINSDGNFVSKSIKRTQDLV--ADPNQHVKSALASVIMGLSPILGKHNTV-DHLLPLFLSQLKDECPEVRLNIISNLD 80 (114)
Q Consensus 4 l~~~~~~~~~~~~ilP~l~~L~--~D~s~~VR~~~a~~l~~la~~lg~e~~~-~~llP~~~~LL~D~e~EVR~~a~~~l~ 80 (114)
+|.+..+ ++...++|.+.+++ .|+++.||..++-.+..+.+.. ++... ..+.+.+.++|+|.++.|+.+++..+.
T Consensus 135 L~~i~~~-e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~ 212 (621)
T 2vgl_A 135 IANVGSR-EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLIT 212 (621)
T ss_dssp HHHHCCH-HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred hhccCCH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 4555444 46778999999999 9999999999999999999844 44443 489999999999999999999999999
Q ss_pred HHHhhh
Q psy13759 81 CVNEVI 86 (114)
Q Consensus 81 ~~~~~l 86 (114)
.+++.=
T Consensus 213 ~i~~~~ 218 (621)
T 2vgl_A 213 TLAQKN 218 (621)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 988753
No 39
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.59 E-value=0.00022 Score=59.90 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=65.1
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC--cchhhhhh-HHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG--KHNTVDHL-LPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg--~e~~~~~l-lP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
..+.++|.++.| +.+++.+|.++|..+.+|++--. +-...+.+ .|++..+|.|++.+||.++++.+..++..-|.+
T Consensus 32 ~~~~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 32 REDKILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HHHTTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred chhhHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 345699999874 67899999999999999995211 11222344 456788999999999999999999999887766
Q ss_pred hH----hhhHhHHHHHH
Q psy13759 90 QD----VSFKLGQVDRT 102 (114)
Q Consensus 90 ~i----~~~iLP~i~~l 102 (114)
.. ...++|.+..+
T Consensus 111 ~~~~l~~~~il~~L~~~ 127 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHA 127 (684)
T ss_dssp HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHH
Confidence 42 22355555433
No 40
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.57 E-value=0.00015 Score=54.96 Aligned_cols=71 Identities=10% Similarity=0.039 Sum_probs=60.9
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
.+|.+...++|++.+||..+++....-|.........+.++|++..|..|++.-||++++..|-.+++.=+
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 68899999999999999999999877665433344456799999999999999999999999999988743
No 41
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.56 E-value=0.00015 Score=57.97 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=61.0
Q ss_pred HHHhhHHHHHHhcCCC-CHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 13 FVSKSIKRTQDLVADP-NQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~-s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
....++|.+..++++. ++.||..++..+..++..-. ........+|.++++|++++++||..++..+..++..
T Consensus 127 ~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~ 203 (530)
T 1wa5_B 127 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD 203 (530)
T ss_dssp HHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 3456899999999987 99999999999999996322 2233357899999999999999999999999999864
No 42
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00012 Score=54.55 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=58.5
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh-----hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV-----DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~-----~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
++..+....+.++|+||.+....+..+-+.+|..... ..+++.+..++.|.+++||.++.+-+..+-.++|+.
T Consensus 140 ~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 140 SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 4556666788999999999999999998888865432 346777888999999999999999999999999964
No 43
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.51 E-value=0.00026 Score=56.52 Aligned_cols=74 Identities=9% Similarity=0.042 Sum_probs=61.9
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc---chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~---e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
..++|.+..++++.+|.||..++..+..++..-.. ......++|.++++|+|.+++||..++..+..++..-++
T Consensus 340 ~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~ 416 (530)
T 1wa5_B 340 AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ 416 (530)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 45899999999999999999999999999863221 122357899999999999999999999999999876544
No 44
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.47 E-value=4.7e-05 Score=57.35 Aligned_cols=47 Identities=23% Similarity=0.234 Sum_probs=34.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHH
Q psy13759 19 KRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD 80 (114)
Q Consensus 19 P~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~ 80 (114)
+.+..+++|++|+||.+++..+ + .+.+..|++|++++||.+++.++.
T Consensus 173 ~ll~~ll~D~d~~VR~aaa~~l-------~--------~~~L~~Ll~D~d~~VR~~aa~~l~ 219 (244)
T 1lrv_A 173 ESLGLMTQDPEPEVRRIVASRL-------R--------GDDLLELLHDPDWTVRLAAVEHAS 219 (244)
T ss_dssp GGGGGSTTCSSHHHHHHHHHHC-------C--------GGGGGGGGGCSSHHHHHHHHHHSC
T ss_pred HHHHHHHcCCCHHHHHHHHHhC-------C--------HHHHHHHHcCCCHHHHHHHHHcCC
Confidence 3455678888888888888763 1 145777788888888888888876
No 45
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.43 E-value=0.00027 Score=62.54 Aligned_cols=95 Identities=8% Similarity=0.114 Sum_probs=76.4
Q ss_pred chhccCChhHHHHhhHHHHHHhcCCC-CHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhH
Q psy13759 3 LLLTINSDGNFVSKSIKRTQDLVADP-NQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNL 79 (114)
Q Consensus 3 ~l~~~~~~~~~~~~ilP~l~~L~~D~-s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l 79 (114)
.+.+.++|+.. .-++|.+..-.+.. .|+.+.++-..+..+++..+..... -+++|.+...+.|.-+||..++...+
T Consensus 121 ~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~ 199 (986)
T 2iw3_A 121 SIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAM 199 (986)
T ss_dssp HHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHH
Confidence 45667788886 77888886655544 6999999999999999776544443 48999999999999999999999999
Q ss_pred HHHHhhhChhhHhhhHhHHH
Q psy13759 80 DCVNEVIGIQQDVSFKLGQV 99 (114)
Q Consensus 80 ~~~~~~l~~~~i~~~iLP~i 99 (114)
.++|..++-..+ +.++|.+
T Consensus 200 ~~~~~~~~n~d~-~~~~~~~ 218 (986)
T 2iw3_A 200 TKATETVDNKDI-ERFIPSL 218 (986)
T ss_dssp HHHGGGCCCTTT-GGGHHHH
T ss_pred HHHHhcCCCcch-hhhHHHH
Confidence 999999987665 3444554
No 46
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.43 E-value=0.00079 Score=57.89 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=56.3
Q ss_pred HhhHHHHHHhcCCC---CHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 15 SKSIKRTQDLVADP---NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 15 ~~ilP~l~~L~~D~---s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
+.++|.+ +|+ ++.||+.++..++.+++.+.++ .-..++|.+++.+.|+++.||.+|+..+..|++..
T Consensus 458 ~~v~p~l----~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 458 KEIAPDL----TSNNIPHIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HHTHHHH----HCSSCSCHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred HHhHHHh----cCCCCCCceehHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 3455544 455 9999999999999999988654 45678999999999999999999999999999854
No 47
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.38 E-value=0.00054 Score=56.69 Aligned_cols=83 Identities=10% Similarity=-0.063 Sum_probs=65.7
Q ss_pred HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhH
Q psy13759 12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQD 91 (114)
Q Consensus 12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i 91 (114)
+..-.++..+++-++|+++.||..+...++.++. ......++|.+.++++|+.+.||.+|+..+.++... .|+.+
T Consensus 103 e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~-~p~~v 177 (618)
T 1w63_A 103 DVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK-VPELM 177 (618)
T ss_dssp HHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH-CGGGG
T ss_pred HHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ChHHH
Confidence 3445577888888999999999999999999872 234568899999999999999999999999999874 34433
Q ss_pred hhhHhHHHH
Q psy13759 92 VSFKLGQVD 100 (114)
Q Consensus 92 ~~~iLP~i~ 100 (114)
+.++|.+.
T Consensus 178 -~~~~~~l~ 185 (618)
T 1w63_A 178 -EMFLPATK 185 (618)
T ss_dssp -GGGGGGTT
T ss_pred -HHHHHHHH
Confidence 34554443
No 48
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.36 E-value=5.1e-05 Score=57.17 Aligned_cols=46 Identities=24% Similarity=0.280 Sum_probs=35.1
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHH
Q psy13759 20 RTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD 80 (114)
Q Consensus 20 ~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~ 80 (114)
.+..+.+|++|.||.+++.++ +. +.+..+++|++++||.+++.++.
T Consensus 150 ~l~~l~~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l~ 195 (244)
T 1lrv_A 150 RLFRFMRDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRLR 195 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHCC
T ss_pred HHHHHHcCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhCC
Confidence 456788899999998888862 21 45567888999999988888775
No 49
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.35 E-value=0.00098 Score=52.20 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=63.1
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
...+|.+..+++|.+.+||..++..+..++...+.......++|.+++++++++++||..++..+..++..
T Consensus 226 ~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 226 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp TTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 35789999999999999999999999999977766666678999999999999999999999999988763
No 50
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.26 E-value=0.001 Score=52.80 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=59.2
Q ss_pred HHHhhHHHHHHhcCCCC-HHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 13 FVSKSIKRTQDLVADPN-QHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s-~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
+...++|.+..++++.+ +.||..++..+..++..-. ........+|.++++|+|++++||..++..+..++..
T Consensus 114 ~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 190 (528)
T 4b8j_A 114 IQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGD 190 (528)
T ss_dssp HHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Confidence 34458999988888876 9999999999999996311 1222236899999999999999999999999999853
No 51
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.25 E-value=0.0013 Score=52.20 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=61.6
Q ss_pred HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc---chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~---e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
.....++|.+..++.+.++.||..++..+..++..-+. ......++|.++++|++++++||..++..+..++.
T Consensus 240 ~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 240 EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence 44566999999999999999999999999999954332 12234689999999999999999999999999886
No 52
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.06 E-value=0.0018 Score=49.53 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=57.1
Q ss_pred hhHHHHHH-hcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcC-CCChHHHHHHHHhHHHHHhh
Q psy13759 16 KSIKRTQD-LVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLK-DECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 16 ~ilP~l~~-L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~-D~e~EVR~~a~~~l~~~~~~ 85 (114)
..+|.+-. ++++++..||..+|..++.++..-+ ........+|.+++||+ |+..+||..++..+..++..
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~ 155 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 36787777 9999999999999999999985322 22333478999999999 56899999999999999854
No 53
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.99 E-value=0.0042 Score=50.98 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=62.4
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
.++|.+..++++.+.++|..++..+..++..-++......++|.+++++++++++||..++..+..++..
T Consensus 224 g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 224 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp THHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999977666666678999999999999999999999999888763
No 54
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.91 E-value=0.0049 Score=48.71 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=72.9
Q ss_pred chhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759 3 LLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 3 ~l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
.||++.+++ ....+.+.+++...|+++.||.+++-....+.+.- +|.. +.+++...+++.|.++-|-.+++.-+..+
T Consensus 127 tL~~I~~~~-m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-pe~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei 203 (355)
T 3tjz_B 127 ALCQITDST-MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS-FDVV-KRWVNEAQEAASSDNIMVQYHALGLLYHV 203 (355)
T ss_dssp HHHHHCCTT-THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-HHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHhcCCCHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-HHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 456666665 46779999999999999999999999988887654 3333 57999999999999999999999999988
Q ss_pred HhhhChhhHhhhHhHHHHH
Q psy13759 83 NEVIGIQQDVSFKLGQVDR 101 (114)
Q Consensus 83 ~~~l~~~~i~~~iLP~i~~ 101 (114)
++. +. ....++++.+.+
T Consensus 204 ~~~-d~-~a~~kLv~~l~~ 220 (355)
T 3tjz_B 204 RKN-DR-LAVSKMISKFTR 220 (355)
T ss_dssp HTT-CH-HHHHHHHHHHHS
T ss_pred Hhh-ch-HHHHHHHHHHhc
Confidence 864 22 233556665543
No 55
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.80 E-value=0.0055 Score=52.03 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=62.8
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
..++|.+..++++.+..+|..++..+..++...++......++|.+++++++++++||..++..+..++..
T Consensus 359 ~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 359 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred hchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 34789999999999999999999999999977766666678999999999999999999999999888763
No 56
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.75 E-value=0.0078 Score=48.31 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=57.4
Q ss_pred HHHhhHHHHHHhcC-CCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 13 FVSKSIKRTQDLVA-DPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 13 ~~~~ilP~l~~L~~-D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
+..-++|.+-++++ +.++.|+..+|..+..||..-. +.......+|.++++|++++.+||..++..|.+++.
T Consensus 97 i~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 97 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp HHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 44448998888775 5678999999999999984322 122334689999999999999999999999998874
No 57
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.73 E-value=0.0033 Score=50.57 Aligned_cols=75 Identities=7% Similarity=0.098 Sum_probs=61.1
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
..++|.+..++++++..||..+|..+..++..-. .......++|.++.++++.+.+||..|+..+..++..-.++
T Consensus 334 ~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~ 411 (529)
T 3tpo_A 334 AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVE 411 (529)
T ss_dssp TTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHH
Confidence 3478899999999999999999999999985322 12233479999999999999999999999999887654444
No 58
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.60 E-value=0.0083 Score=48.15 Aligned_cols=71 Identities=6% Similarity=0.005 Sum_probs=59.3
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc----hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH----NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e----~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
..++|.+..++++.+++||..++..+..++..-..+ ......+|.+.+||+..+++++..++..+.++.+.
T Consensus 357 ~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999999998543333 23357899999999999999999999988877654
No 59
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.59 E-value=0.0028 Score=55.99 Aligned_cols=65 Identities=18% Similarity=0.059 Sum_probs=53.2
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
+...+..+.++.+|+||+++|..++.++.--|. ..++..+..|++|++.+||.+|+.++..++.-
T Consensus 613 v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 613 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 445556688899999999999999998855554 44667788889999999999999999988753
No 60
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.58 E-value=0.0045 Score=48.40 Aligned_cols=69 Identities=13% Similarity=0.053 Sum_probs=55.6
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccc--cCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPI--LGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~--lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
...++|.+..++.|.++.||..++..+..++.. .-........++.+..|++|++++||..+...+..+
T Consensus 458 ~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 458 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 344789999999999999999999999998732 112222346789999999999999999999888765
No 61
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.54 E-value=0.011 Score=45.20 Aligned_cols=70 Identities=9% Similarity=0.026 Sum_probs=57.2
Q ss_pred hhHHHHHHhcC-CCCHHHHHHHHHHHHccccccC--cc-hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 16 KSIKRTQDLVA-DPNQHVKSALASVIMGLSPILG--KH-NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 16 ~ilP~l~~L~~-D~s~~VR~~~a~~l~~la~~lg--~e-~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
..+|.+-.+++ |++..||..++..+..++...+ .+ ......+|.++.+|++.+++||..++..+..++..
T Consensus 124 g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 124 GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 47777777666 6789999999999999985433 22 23347899999999999999999999999998875
No 62
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.50 E-value=0.011 Score=51.38 Aligned_cols=75 Identities=8% Similarity=0.026 Sum_probs=62.4
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccC--cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILG--KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ 90 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg--~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~ 90 (114)
..+|.+..+++.+++.||..++..+..||..-. ........+|.++.||++..+++|..|+..+.+++..-.++.
T Consensus 495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~ 571 (810)
T 3now_A 495 GITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571 (810)
T ss_dssp THHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence 489999999999999999999999999984211 223334689999999999999999999999999987766554
No 63
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.48 E-value=0.0091 Score=47.97 Aligned_cols=71 Identities=7% Similarity=0.016 Sum_probs=59.2
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc----hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH----NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e----~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
..++|.+..++++.++.||..+|..+..++..-..+ ......+|.+++||+..+++++..++..|..+.+.
T Consensus 376 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 376 HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999999999988543333 23356899999999999999999999988887654
No 64
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.48 E-value=0.0076 Score=51.79 Aligned_cols=95 Identities=12% Similarity=0.059 Sum_probs=63.4
Q ss_pred hhccCChhHHHHhhHHHHHHhcC------CCCHHHHHHHHHHHHcccccc-Ccchhhh------hhHHH----HHHhcCC
Q psy13759 4 LLTINSDGNFVSKSIKRTQDLVA------DPNQHVKSALASVIMGLSPIL-GKHNTVD------HLLPL----FLSQLKD 66 (114)
Q Consensus 4 l~~~~~~~~~~~~ilP~l~~L~~------D~s~~VR~~~a~~l~~la~~l-g~e~~~~------~llP~----~~~LL~D 66 (114)
|++.++ +.+...++|.+....+ +.+|+.|.++--.++.+++.. |.+.... .+.|. +...++|
T Consensus 388 l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~ 466 (960)
T 1wa5_C 388 LKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTS 466 (960)
T ss_dssp HHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHC
T ss_pred HHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcC
Confidence 444444 5566678888776655 788999999999999987542 2221111 34343 3444578
Q ss_pred C---ChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHH
Q psy13759 67 E---CPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVD 100 (114)
Q Consensus 67 ~---e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~ 100 (114)
+ .+-||..++..+..+++++.++. ...++|.+.
T Consensus 467 ~~~~~p~vr~~a~~~lg~~~~~~~~~~-l~~~l~~l~ 502 (960)
T 1wa5_C 467 NNIPHIILRVDAIKYIYTFRNQLTKAQ-LIELMPILA 502 (960)
T ss_dssp SSCSCHHHHHHHHHHHHHTGGGSCHHH-HHHHHHHHH
T ss_pred CCCCCceehHHHHHHHHHHHhhCCHHH-HHHHHHHHH
Confidence 7 99999999999999999997653 455666554
No 65
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.28 E-value=0.011 Score=46.19 Aligned_cols=72 Identities=6% Similarity=-0.013 Sum_probs=60.2
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccc--cC-cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPI--LG-KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~--lg-~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
.+|.+-.++++.+..||..++..+..++.. -. ........+|.+.+|+++...++|..++..+.+++..-+.
T Consensus 264 ~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 264 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred CHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 789999999999999999999999999832 11 1233346899999999999999999999999999987443
No 66
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.26 E-value=0.02 Score=46.86 Aligned_cols=73 Identities=14% Similarity=0.056 Sum_probs=59.2
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccc--cCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPI--LGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~--lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
...+|.+..++.|.+..||..++..+..++.. .-........++.+.++++|++++||.+++..+..++..-+
T Consensus 456 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 456 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 34789999999999999999999999988743 11112223578999999999999999999999999887554
No 67
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.24 E-value=0.0079 Score=51.05 Aligned_cols=73 Identities=14% Similarity=0.056 Sum_probs=59.4
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccc--cCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPI--LGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~--lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
..++|.+..++.+.+..||..++..+..++.. .-........++.+.+|++|++++||..|+..+..++..-+
T Consensus 592 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 592 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp TCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 44789999999999999999999999988732 11112223578999999999999999999999999987554
No 68
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.21 E-value=0.031 Score=46.42 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=68.3
Q ss_pred hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcC-CCChHHHHHHHHhHHHHHhhhCh
Q psy13759 10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK-DECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~-D~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
...........+..++.++...+||.+-..+..++..-+.........+.|+..++ |++..||..++.-+..++.-=..
T Consensus 323 ~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv 402 (621)
T 2vgl_A 323 EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNA 402 (621)
T ss_dssp CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhH
Confidence 34556667777888888899999999999999999776533344566788888888 99999999999888877765444
Q ss_pred hhHhhhHhHHHH
Q psy13759 89 QQDVSFKLGQVD 100 (114)
Q Consensus 89 ~~i~~~iLP~i~ 100 (114)
+.+.+.++-++.
T Consensus 403 ~~Iv~eL~~yl~ 414 (621)
T 2vgl_A 403 QQIVAEMLSYLE 414 (621)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 69
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.19 E-value=0.016 Score=49.44 Aligned_cols=89 Identities=6% Similarity=0.021 Sum_probs=61.2
Q ss_pred hHHHHhhHHHHHHhcCC-----CCHHHHHHHHHHHHccccccCcch--hhhhhHHHHHHhc-CCCChHHHHHHHHhHHHH
Q psy13759 11 GNFVSKSIKRTQDLVAD-----PNQHVKSALASVIMGLSPILGKHN--TVDHLLPLFLSQL-KDECPEVRLNIISNLDCV 82 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D-----~s~~VR~~~a~~l~~la~~lg~e~--~~~~llP~~~~LL-~D~e~EVR~~a~~~l~~~ 82 (114)
+.+...+++.+....+. .+|+.|.++.-.++.+++...++. ....+++.+.++. +|..+.||..++..+..+
T Consensus 454 ~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~ 533 (971)
T 2x1g_F 454 DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSY 533 (971)
T ss_dssp THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHH
Confidence 55667777777665543 799999999999999998877644 2245666666665 378999999999999999
Q ss_pred HhhhChh-hHhhhHhHHH
Q psy13759 83 NEVIGIQ-QDVSFKLGQV 99 (114)
Q Consensus 83 ~~~l~~~-~i~~~iLP~i 99 (114)
+++++.. .....++|.+
T Consensus 534 ~~~l~~~~~~l~~vl~~l 551 (971)
T 2x1g_F 534 CNWLMENPAYIPPAINLL 551 (971)
T ss_dssp HHHHC----CHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 9999743 2334444544
No 70
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.18 E-value=0.028 Score=42.57 Aligned_cols=69 Identities=14% Similarity=0.293 Sum_probs=57.3
Q ss_pred HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759 12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82 (114)
Q Consensus 12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~ 82 (114)
.+..+++|.+-.+..|++..||.-+++.+.+.|.. +.......++.+..|++|+++.|-+.++.....+
T Consensus 49 ~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 49 ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 37788999998899999999999999999999833 3344457899999999999999988888766543
No 71
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=95.99 E-value=0.028 Score=44.51 Aligned_cols=68 Identities=10% Similarity=-0.040 Sum_probs=55.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHccccccC--c-chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 18 IKRTQDLVADPNQHVKSALASVIMGLSPILG--K-HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 18 lP~l~~L~~D~s~~VR~~~a~~l~~la~~lg--~-e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
+|.+-.+++..++.+|..++..+..++..-. + .......+|.++++|+.++++++..++..+..++..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~ 74 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR 74 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 5667667777789999999999999984322 2 334457899999999999999999999999999873
No 72
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.93 E-value=0.023 Score=48.25 Aligned_cols=73 Identities=23% Similarity=0.314 Sum_probs=58.6
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc-hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH-NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e-~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
....+++.+..+.. .+++||..++..++.+++.++.+ .....++|.+++.++| +.||.+|+..+..+++..+.
T Consensus 487 ~l~~l~~~l~~l~~-~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~ 560 (963)
T 2x19_B 487 VVPGLIGLIPRISI-SNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKY 560 (963)
T ss_dssp HHHHHHHHGGGSCC-CSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH
Confidence 44557776655554 58999999999999999988754 3446789999999977 89999999999999986653
No 73
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=95.92 E-value=0.044 Score=43.39 Aligned_cols=90 Identities=18% Similarity=0.119 Sum_probs=66.4
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccc--cCc-chhhhhhHHHHHHhcC-CCChHHHHHHHHhHHHHHhhhC-h
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPI--LGK-HNTVDHLLPLFLSQLK-DECPEVRLNIISNLDCVNEVIG-I 88 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~--lg~-e~~~~~llP~~~~LL~-D~e~EVR~~a~~~l~~~~~~l~-~ 88 (114)
....+|.+-.++++.+..++..++..+..|+.. -.+ .......+|.++++|+ +.++++|..++..|..++..=. .
T Consensus 42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~ 121 (457)
T 1xm9_A 42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121 (457)
T ss_dssp HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhH
Confidence 344899999999999999999999999999963 111 1223467999999999 7799999999999999997611 1
Q ss_pred hhHhhhHhHHHHHHH
Q psy13759 89 QQDVSFKLGQVDRTS 103 (114)
Q Consensus 89 ~~i~~~iLP~i~~l~ 103 (114)
+.+.+..+|.+-++-
T Consensus 122 ~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 122 EELIADALPVLADRV 136 (457)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHH
Confidence 123335566554443
No 74
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.81 E-value=0.024 Score=48.42 Aligned_cols=73 Identities=7% Similarity=0.077 Sum_probs=57.0
Q ss_pred HHHhhHHHHHHhc-CCCCHHHHHHHHHHHHccccccCcch-hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh
Q psy13759 13 FVSKSIKRTQDLV-ADPNQHVKSALASVIMGLSPILGKHN-TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 13 ~~~~ilP~l~~L~-~D~s~~VR~~~a~~l~~la~~lg~e~-~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
....+++.+..+. .|.+++||..++..++.+++.++.+. ....++|.+++.+ | +.|+.+|+..+..+++..+.
T Consensus 502 ~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~ 576 (971)
T 2x1g_F 502 QIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQL 576 (971)
T ss_dssp HHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666 37899999999999999999988543 3457888888888 5 89999999999999987654
No 75
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.78 E-value=0.037 Score=44.34 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=57.8
Q ss_pred HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
....+++|.+-.+..|++..||..+++.+.+.|.. +.......++.+..|++|+++.|-+.++.....+-
T Consensus 59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999853 22223678999999999999999888776655443
No 76
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.74 E-value=0.037 Score=46.90 Aligned_cols=88 Identities=11% Similarity=0.075 Sum_probs=63.0
Q ss_pred hHHHHhhHHHHHHhc----CCCCHHHHHHHHHHHHccccccCcch--hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 11 GNFVSKSIKRTQDLV----ADPNQHVKSALASVIMGLSPILGKHN--TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~----~D~s~~VR~~~a~~l~~la~~lg~e~--~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
+.....+++.+.... ++.+|+.|.++.-.++.+++.+..+. ....+++.+.++.. +.+.||..++..+..+++
T Consensus 440 ~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~-~~~~vr~~~~~~l~~~~~ 518 (963)
T 2x19_B 440 AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISI-SNVQLADTVMFTIGALSE 518 (963)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCC-CSHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHH
Confidence 344556677776665 77899999999999999998877533 22356665555554 578899999999999999
Q ss_pred hhChh-hHhhhHhHHH
Q psy13759 85 VIGIQ-QDVSFKLGQV 99 (114)
Q Consensus 85 ~l~~~-~i~~~iLP~i 99 (114)
+++.. .....++|.+
T Consensus 519 ~l~~~~~~l~~vl~~l 534 (963)
T 2x19_B 519 WLADHPVMINSVLPLV 534 (963)
T ss_dssp HHHHCHHHHTTTHHHH
T ss_pred HHHhCHHHHHHHHHHH
Confidence 98643 3334444443
No 77
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.68 E-value=0.018 Score=50.55 Aligned_cols=74 Identities=11% Similarity=0.121 Sum_probs=59.1
Q ss_pred hhHHHHHHhcC-----CCCHHHHHHHHHHHHccccccCcchh-hhhhHHHHHH--hcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 16 KSIKRTQDLVA-----DPNQHVKSALASVIMGLSPILGKHNT-VDHLLPLFLS--QLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 16 ~ilP~l~~L~~-----D~s~~VR~~~a~~l~~la~~lg~e~~-~~~llP~~~~--LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
.+++.+..+.+ |+.++||+..++.++..++.+..+.. -..+++.|+. -+.|+++.||.+|+..+..|++..+
T Consensus 490 ~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 490 VLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 46677777654 99999999999999999999976432 2345555666 6668899999999999999999887
Q ss_pred hh
Q psy13759 88 IQ 89 (114)
Q Consensus 88 ~~ 89 (114)
..
T Consensus 570 ~~ 571 (980)
T 3ibv_A 570 KQ 571 (980)
T ss_dssp TT
T ss_pred HH
Confidence 63
No 78
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=95.53 E-value=0.04 Score=47.82 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=61.0
Q ss_pred HHHhhHHHHHHhcC-----CCCHHHHHHHHHHHHccccccCcch-hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759 13 FVSKSIKRTQDLVA-----DPNQHVKSALASVIMGLSPILGKHN-TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI 86 (114)
Q Consensus 13 ~~~~ilP~l~~L~~-----D~s~~VR~~~a~~l~~la~~lg~e~-~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l 86 (114)
+...+++.+..+.. |+.+.||..++..++..++.+..+. .-..+++.+++.+.|+++.||.+|+..+..+++..
T Consensus 492 ~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 492 FVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp HHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 35667777766553 5778888889999999988776542 33568888888999999999999999999999977
Q ss_pred Chh
Q psy13759 87 GIQ 89 (114)
Q Consensus 87 ~~~ 89 (114)
+..
T Consensus 572 ~~~ 574 (1049)
T 3m1i_C 572 KYH 574 (1049)
T ss_dssp THH
T ss_pred HHH
Confidence 643
No 79
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.49 E-value=0.024 Score=50.09 Aligned_cols=80 Identities=13% Similarity=0.022 Sum_probs=64.7
Q ss_pred CChhHHHHhhHHHHHHhcCC--CCHHHHHHHHHHHHccccccCcch---hhhhhHHHHHHhcC-----CCChHHHHHHHH
Q psy13759 8 NSDGNFVSKSIKRTQDLVAD--PNQHVKSALASVIMGLSPILGKHN---TVDHLLPLFLSQLK-----DECPEVRLNIIS 77 (114)
Q Consensus 8 ~~~~~~~~~ilP~l~~L~~D--~s~~VR~~~a~~l~~la~~lg~e~---~~~~llP~~~~LL~-----D~e~EVR~~a~~ 77 (114)
+.++.....++|.+.+...+ .+|+.|.+++-.++.|++.+.++. ....++|.+++++. |+.+-||..++.
T Consensus 443 l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~ 522 (1023)
T 4hat_C 443 LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMY 522 (1023)
T ss_dssp HCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHH
Confidence 44556777788888776554 689999999999999998877652 23478999999997 677889999999
Q ss_pred hHHHHHhhhC
Q psy13759 78 NLDCVNEVIG 87 (114)
Q Consensus 78 ~l~~~~~~l~ 87 (114)
-+..+++++.
T Consensus 523 ~lGry~~wl~ 532 (1023)
T 4hat_C 523 VVGQYPRFLK 532 (1023)
T ss_dssp HHHTCHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999984
No 80
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=95.35 E-value=0.026 Score=49.87 Aligned_cols=75 Identities=17% Similarity=0.120 Sum_probs=55.9
Q ss_pred hhHHHHhhHHHHHHhcC-CCCHHHHHHHHHHHHccc--c--ccCcchhhhhhHHHHHHhcCCCC-hHHHHHHHHhHHHHH
Q psy13759 10 DGNFVSKSIKRTQDLVA-DPNQHVKSALASVIMGLS--P--ILGKHNTVDHLLPLFLSQLKDEC-PEVRLNIISNLDCVN 83 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~-D~s~~VR~~~a~~l~~la--~--~lg~e~~~~~llP~~~~LL~D~e-~EVR~~a~~~l~~~~ 83 (114)
+......++-.+...++ ++|| +|.++-..+.-+- + .++++. ...+.-.+.++|.|+. .|||..|+..|.++.
T Consensus 795 ~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll 872 (997)
T 1vsy_5 795 RKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIV 872 (997)
T ss_dssp CHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 44455667777766666 7899 9998866533222 1 233332 3588999999999999 999999999999998
Q ss_pred hhh
Q psy13759 84 EVI 86 (114)
Q Consensus 84 ~~l 86 (114)
...
T Consensus 873 ~c~ 875 (997)
T 1vsy_5 873 HNW 875 (997)
T ss_dssp HSC
T ss_pred HcC
Confidence 887
No 81
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=95.22 E-value=0.071 Score=46.25 Aligned_cols=85 Identities=11% Similarity=0.084 Sum_probs=64.5
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh-----hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh--Ch
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV-----DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI--GI 88 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~-----~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l--~~ 88 (114)
..+|.+..+..+.+..||.++++.+++++. +++.-. ...+|.++.|++.++.++|.+|+..+..++..- ..
T Consensus 623 G~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~ 700 (810)
T 3now_A 623 QGVSKIEYYLMEDHLYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC 700 (810)
T ss_dssp THHHHHHHHHHSCCTTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 478889889999999999999999999985 222111 357999999999999999999999999998731 12
Q ss_pred hhHh--hhHhHHHHHH
Q psy13759 89 QQDV--SFKLGQVDRT 102 (114)
Q Consensus 89 ~~i~--~~iLP~i~~l 102 (114)
+.+. +..+|.+.+|
T Consensus 701 ~~ii~~~g~I~~Lv~L 716 (810)
T 3now_A 701 EKILAIASWLDILHTL 716 (810)
T ss_dssp HHHHTSTTHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHH
Confidence 2233 3566666554
No 82
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=95.15 E-value=0.17 Score=43.91 Aligned_cols=68 Identities=9% Similarity=0.049 Sum_probs=54.1
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHcccccc-C--cchhh----h--hhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPIL-G--KHNTV----D--HLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~l-g--~e~~~----~--~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
..+|.+..+..+.+..||.++++.+..++..- + ++... . .=+++++.|++.++.++|.+|+..+..+.
T Consensus 606 ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 606 VYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 38899999999999999999999999988422 1 11111 1 12889999999999999999999888774
No 83
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=95.04 E-value=0.054 Score=43.80 Aligned_cols=70 Identities=6% Similarity=0.013 Sum_probs=58.6
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccc--cC-cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPI--LG-KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~--lg-~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
..+|.+-.++.+.+..|+..++..+..++.. -. ........+|.+.+|++....++|..|+..|.+++..
T Consensus 379 G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp THHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 3789999999999999999999999999832 11 2233356899999999999999999999999998865
No 84
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=94.76 E-value=0.13 Score=40.49 Aligned_cols=81 Identities=4% Similarity=0.040 Sum_probs=63.9
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhH
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFK 95 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~i 95 (114)
-+...+++-.+|+++-+|..+-..++.|.. +...+.+.+.+.+.+.|..|-||++|+-...++.+. .||.+ +.+
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v-~~~ 177 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVV-KRW 177 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHH-HTT
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHH-HHH
Confidence 577888889999999999998888888762 224568999999999999999999999998887754 35443 566
Q ss_pred hHHHHHH
Q psy13759 96 LGQVDRT 102 (114)
Q Consensus 96 LP~i~~l 102 (114)
++.++++
T Consensus 178 ~~~l~~l 184 (355)
T 3tjz_B 178 VNEAQEA 184 (355)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.67 E-value=0.17 Score=44.95 Aligned_cols=91 Identities=8% Similarity=0.165 Sum_probs=76.2
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCC-ChHHHHHHHHhHHHHHhhhChh
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDE-CPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~-e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
+-+.-.++|.+-.+..|+...||.++......+...++++.. ..++|.+++-++.. -|..+.+++.-+..+++.. ++
T Consensus 90 e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~ 167 (986)
T 2iw3_A 90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KD 167 (986)
T ss_dssp HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HH
T ss_pred ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HH
Confidence 344445789999999999999999999999999999999887 88999999999776 6999999999999999877 45
Q ss_pred hH---hhhHhHHHHHHH
Q psy13759 90 QD---VSFKLGQVDRTS 103 (114)
Q Consensus 90 ~i---~~~iLP~i~~l~ 103 (114)
++ ...|+|.+.+..
T Consensus 168 ~~~~~~~~~~p~~~~~~ 184 (986)
T 2iw3_A 168 QVALRMPELIPVLSETM 184 (986)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHhccchhcchHhhc
Confidence 43 466778776543
No 86
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.65 E-value=0.076 Score=39.38 Aligned_cols=68 Identities=15% Similarity=0.061 Sum_probs=52.6
Q ss_pred hHHHHHHhcCCCCH--HHHHHHHHHHHccccccC--c-chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 17 SIKRTQDLVADPNQ--HVKSALASVIMGLSPILG--K-HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 17 ilP~l~~L~~D~s~--~VR~~~a~~l~~la~~lg--~-e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
.+|.+-++++..++ .|+..+|..+..++..-. + .......+|.+++||+...++||..|+..|..++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 45666666665555 899888889988884322 2 33334679999999999999999999999999986
No 87
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.23 Score=36.41 Aligned_cols=85 Identities=11% Similarity=0.105 Sum_probs=62.9
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcch--------hhhhhHHHHHH-hcCCCChHHHHHHHHhHHHHHhh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHN--------TVDHLLPLFLS-QLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~--------~~~~llP~~~~-LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
....+.+.....|.|..|-....+.+..+++.+|... ....++|.++. .+.|+-+-+|..+...+..++..
T Consensus 54 ~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~ 133 (278)
T 4ffb_C 54 WRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133 (278)
T ss_dssp TSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 3467788888899999999999999999888777542 22456777665 58999999999999988888876
Q ss_pred hCh-hhHhhhHhHHH
Q psy13759 86 IGI-QQDVSFKLGQV 99 (114)
Q Consensus 86 l~~-~~i~~~iLP~i 99 (114)
.++ +.+.+.+++.+
T Consensus 134 ~~~~~~~~e~l~~~l 148 (278)
T 4ffb_C 134 DTSITQSVELVIPFF 148 (278)
T ss_dssp SSSSHHHHHHHGGGG
T ss_pred cCcHHHHHHHHHHHH
Confidence 543 45556666554
No 88
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=94.48 E-value=0.11 Score=40.45 Aligned_cols=70 Identities=11% Similarity=0.149 Sum_probs=54.2
Q ss_pred HhhHHHHHHhcCCCCH----HHHHHHHHHHHcccccc--Ccch----hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 15 SKSIKRTQDLVADPNQ----HVKSALASVIMGLSPIL--GKHN----TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~----~VR~~~a~~l~~la~~l--g~e~----~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
...+|.+-.++.+.+. .|+..++..+..++.++ +.+. .....+|.++++|++.+.+|+..++..+..++.
T Consensus 213 ~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 292 (354)
T 3nmw_A 213 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 292 (354)
T ss_dssp TTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred cCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC
Confidence 3478888888776554 59999999999888531 2221 123579999999999999999999999999974
No 89
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.39 E-value=0.22 Score=36.79 Aligned_cols=69 Identities=20% Similarity=0.144 Sum_probs=55.8
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccc--cCcc-hhhhhhHHHHHHhcCC-CChHHHHHHHHhHHHHHh
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPI--LGKH-NTVDHLLPLFLSQLKD-ECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~--lg~e-~~~~~llP~~~~LL~D-~e~EVR~~a~~~l~~~~~ 84 (114)
..+|.+-.+++..+..||..++..+..|+.. -.+. +....-+|.++++|++ .+.++|.+++..|-.++.
T Consensus 52 G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 52 RGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 3789999998999999999999999999852 1222 2224689999999985 689999999988888775
No 90
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.32 E-value=0.11 Score=45.76 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=62.9
Q ss_pred HHHHhhHHHHHHhcC-----CCCHHHHHHHHHHHHccccccCcch-hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 12 NFVSKSIKRTQDLVA-----DPNQHVKSALASVIMGLSPILGKHN-TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 12 ~~~~~ilP~l~~L~~-----D~s~~VR~~~a~~l~~la~~lg~e~-~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
.+...++|.+-.+.. |...+||..++-.++..++.+..+. .-..+++.+++-+.|+.+.|..+|+.++..+|+-
T Consensus 491 ~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 491 RFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 355668888888876 6888999999999999998885432 2245677777778899999999999999999998
Q ss_pred hChhh
Q psy13759 86 IGIQQ 90 (114)
Q Consensus 86 l~~~~ 90 (114)
.+...
T Consensus 571 c~~~l 575 (1023)
T 4hat_C 571 CKYHF 575 (1023)
T ss_dssp HTHHH
T ss_pred HHHHh
Confidence 76543
No 91
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.11 E-value=0.27 Score=42.60 Aligned_cols=76 Identities=9% Similarity=0.113 Sum_probs=60.6
Q ss_pred HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchh----------hhhhHHHHHHhcCCCChHHHHHHHHhHHH
Q psy13759 12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNT----------VDHLLPLFLSQLKDECPEVRLNIISNLDC 81 (114)
Q Consensus 12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~----------~~~llP~~~~LL~D~e~EVR~~a~~~l~~ 81 (114)
.....+++.+-....|++.+||.++|..|..+|+..+++.. ...++..+.+++.+-..+-+..+.+.+..
T Consensus 536 ~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ 615 (1049)
T 3m1i_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI 615 (1049)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556777777788899999999999999999988776543 45677777778888777778888888888
Q ss_pred HHhhhC
Q psy13759 82 VNEVIG 87 (114)
Q Consensus 82 ~~~~l~ 87 (114)
++...|
T Consensus 616 ii~~~~ 621 (1049)
T 3m1i_C 616 IISEER 621 (1049)
T ss_dssp HHHTCC
T ss_pred HHHcCC
Confidence 888877
No 92
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.04 E-value=0.4 Score=36.39 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=64.5
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhh
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVS 93 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~ 93 (114)
.+.++|.+-.-+.|...+||..+-+.+..++...++ +.+.+.+.+=++..++-+|..++.-+..+-+.-|... .
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~ 203 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--L 203 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--G
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--c
Confidence 466999999999999999999999999888876544 4567777778899999999999999999999888762 3
Q ss_pred hHh
Q psy13759 94 FKL 96 (114)
Q Consensus 94 ~iL 96 (114)
..+
T Consensus 204 ~~l 206 (266)
T 2of3_A 204 KSL 206 (266)
T ss_dssp GGG
T ss_pred ccc
Confidence 455
No 93
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=93.83 E-value=0.19 Score=41.97 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=64.5
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHccccc---cCcchh-hhhhHHHHHHhcCC-CChHHHHHHHHhHHHHHhhhC-hh
Q psy13759 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPI---LGKHNT-VDHLLPLFLSQLKD-ECPEVRLNIISNLDCVNEVIG-IQ 89 (114)
Q Consensus 16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~---lg~e~~-~~~llP~~~~LL~D-~e~EVR~~a~~~l~~~~~~l~-~~ 89 (114)
..+|.+-.+++..+..||..++..+..|+.. -.+... ...-+|.+++||+. ...+++..++..|-.++..=. ..
T Consensus 90 G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~ 169 (584)
T 3l6x_A 90 KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM 169 (584)
T ss_dssp THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHH
T ss_pred CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhH
Confidence 3789999999999999999999999999953 223222 34689999999997 688999999998888876211 11
Q ss_pred hHhhhHhHHHHHH
Q psy13759 90 QDVSFKLGQVDRT 102 (114)
Q Consensus 90 ~i~~~iLP~i~~l 102 (114)
.+.+.-+|.+-++
T Consensus 170 ~I~~~alp~Lv~L 182 (584)
T 3l6x_A 170 EIVDHALHALTDE 182 (584)
T ss_dssp HHHHHTHHHHHHH
T ss_pred HHHhccHHHHHHH
Confidence 2334445655554
No 94
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=93.82 E-value=0.1 Score=45.73 Aligned_cols=84 Identities=10% Similarity=-0.030 Sum_probs=66.9
Q ss_pred hccCChhHHHH----hhHHHHHHhc---CCCCHHHHHHHHHHHHccccccCcc--------hhhhhhHHHHHHhcC----
Q psy13759 5 LTINSDGNFVS----KSIKRTQDLV---ADPNQHVKSALASVIMGLSPILGKH--------NTVDHLLPLFLSQLK---- 65 (114)
Q Consensus 5 ~~~~~~~~~~~----~ilP~l~~L~---~D~s~~VR~~~a~~l~~la~~lg~e--------~~~~~llP~~~~LL~---- 65 (114)
..++.++.+.. .+.+.+.+.. ...+|+.|.++--.+..+++.+... .....+++.+..+++
T Consensus 425 ~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~ 504 (980)
T 3ibv_A 425 INSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVC 504 (980)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTT
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCC
Confidence 34457788788 7888887654 3568999999999999998876532 122368899999976
Q ss_pred -CCChHHHHHHHHhHHHHHhhhCh
Q psy13759 66 -DECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 66 -D~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
|+.|-||..+..-+..+++++..
T Consensus 505 ~~~hp~V~~~~~~~l~rys~~~~~ 528 (980)
T 3ibv_A 505 RHPHPLVQLLYMEILVRYASFFDY 528 (980)
T ss_dssp TCCCHHHHHHHHHHHHHTGGGGGT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999964
No 95
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=93.64 E-value=0.28 Score=40.97 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=57.6
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC--c-chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG--K-HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg--~-e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
+...-+|.+-.+++..+..++..+|..+..+|..-. + .......+|.+++||+..+.+||..|+..|..++.
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTS
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 444567777777788889999999999999984221 2 23334689999999999999999999999999986
No 96
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.35 E-value=0.2 Score=42.91 Aligned_cols=58 Identities=14% Similarity=0.055 Sum_probs=47.1
Q ss_pred HhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 23 DLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 23 ~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
.......|+||.+-=--+.-+...+.. ...++|.++.-|+|.+-|||..|+..+.-++
T Consensus 270 ~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 270 GFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp TGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred hhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 455888999999766655555555543 6788999999999999999999999998888
No 97
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=92.87 E-value=0.36 Score=41.87 Aligned_cols=74 Identities=9% Similarity=0.039 Sum_probs=58.6
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccC--cchhhhhhHHHHHHhcCCCChH---HHHHHHHhHHHHHhhhChhh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILG--KHNTVDHLLPLFLSQLKDECPE---VRLNIISNLDCVNEVIGIQQ 90 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg--~e~~~~~llP~~~~LL~D~e~E---VR~~a~~~l~~~~~~l~~~~ 90 (114)
++|.+..+++..++.+|..++..+..++..-. .....+..+|.+++++...... +|..|+..|.++.-...|+.
T Consensus 458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~ 536 (778)
T 3opb_A 458 LISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL 536 (778)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH
Confidence 88999999999999999999999999984422 2334457899999999987544 99999999999886555544
No 98
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=92.82 E-value=0.54 Score=37.93 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=53.5
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cch-hhhhhHHHHHHh-cCCCChHHHHHHHHhHHHHHh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHN-TVDHLLPLFLSQ-LKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~-~~~~llP~~~~L-L~D~e~EVR~~a~~~l~~~~~ 84 (114)
.+|.+-.++...+..||..++..+..++..-. ++. .....+|.++++ ++..+.+++..++..+..++.
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~ 316 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 316 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHcc
Confidence 58999999999999999999999999985311 122 223679999997 555789999988888877776
No 99
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=92.62 E-value=0.53 Score=34.07 Aligned_cols=74 Identities=9% Similarity=-0.080 Sum_probs=55.1
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhH
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFK 95 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~i 95 (114)
+.+.+...++|.+..+|..+..... +. .++...+.+++++..+++|++--||+++.-.|..+++. .++.+...+
T Consensus 125 ~~~~i~~W~~s~~~w~rR~ai~~~l---~~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~~~~v~~fl 198 (220)
T 2b6c_A 125 LPTIFALFYGAENFWNRRVALNLQL---ML-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-NPQWVEELM 198 (220)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHTTT---TC-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-CHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH---HH-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence 5577788888888777777766442 22 33444567899999999999999999999999999887 565554443
No 100
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=91.56 E-value=0.42 Score=36.45 Aligned_cols=71 Identities=13% Similarity=0.068 Sum_probs=40.6
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
..+...+.+|..-++.+|..+.=..+.+++..-+....-+.++--+..|++-+++.+|.-++..+..+...
T Consensus 149 ~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 149 KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 33455555555555666666666666666655554444455555556666666666666666666555543
No 101
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.34 E-value=0.39 Score=42.60 Aligned_cols=74 Identities=16% Similarity=0.050 Sum_probs=45.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHhHH
Q psy13759 20 RTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQ 98 (114)
Q Consensus 20 ~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~ 98 (114)
++..+.+|.+..||.+++..++.++ +|.+ +.+..++-.|+++.+++||.+++..+..++.--|...+.+.+-|.
T Consensus 582 LL~~~~~d~~d~VRraAViaLGlI~--~g~~---e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 582 LLHVAVSDSNDDVRRAAVIALGFVL--LRDY---TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHT--SSSC---SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHhccCCcHHHHHHHHHHHHhhc--cCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 4555566777777777777776654 2222 123333444667789999999999888877555544444444443
No 102
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=90.50 E-value=1.5 Score=32.83 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=42.8
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
..+.--+-.+++|++..=|.++-..+..+++.-.+ +..-++|-+..||.|.+--||..+++.+..++..-+
T Consensus 143 ~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~--yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np 213 (253)
T 2db0_A 143 ASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFK--YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLND 213 (253)
T ss_dssp HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHH--HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCcc--ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH
Confidence 33444444555566666666666666666644322 223466777777777777777777777776665443
No 103
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=88.02 E-value=0.99 Score=40.24 Aligned_cols=82 Identities=13% Similarity=0.026 Sum_probs=61.1
Q ss_pred ccCChhHHHHhhHHHHHHhcC--CCCHHHHHHHHHHHHccccccCcch---hhhhhHHHHHHhcC-----CCChHHHHHH
Q psy13759 6 TINSDGNFVSKSIKRTQDLVA--DPNQHVKSALASVIMGLSPILGKHN---TVDHLLPLFLSQLK-----DECPEVRLNI 75 (114)
Q Consensus 6 ~~~~~~~~~~~ilP~l~~L~~--D~s~~VR~~~a~~l~~la~~lg~e~---~~~~llP~~~~LL~-----D~e~EVR~~a 75 (114)
+++.++.....+++.+.+..+ ..+|+.+.+++-.++.++..+.++. ..-.++|.+++|+. |+-+-||.++
T Consensus 467 t~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i 546 (1073)
T 3gjx_A 467 THLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNI 546 (1073)
T ss_dssp HHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHH
Confidence 345667777778888865443 4689999999999999998777532 23467888888884 3456778887
Q ss_pred HHhHHHHHhhhC
Q psy13759 76 ISNLDCVNEVIG 87 (114)
Q Consensus 76 ~~~l~~~~~~l~ 87 (114)
.--+..+.+|+.
T Consensus 547 ~~vlgrY~~wl~ 558 (1073)
T 3gjx_A 547 MYIVGQYPRFLR 558 (1073)
T ss_dssp HHHHHHCHHHHH
T ss_pred HHHHhhhHHHHH
Confidence 778888888885
No 104
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=87.57 E-value=0.43 Score=39.85 Aligned_cols=49 Identities=14% Similarity=-0.003 Sum_probs=41.0
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh----hhhHHHHHHhcC
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV----DHLLPLFLSQLK 65 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~----~~llP~~~~LL~ 65 (114)
+.|.+..+..|++..||.+++..|..||..-|.+... ..++|.+..+++
T Consensus 77 v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~ 129 (684)
T 4gmo_A 77 VHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAK 129 (684)
T ss_dssp HHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHH
Confidence 4467789999999999999999999999888866543 468888888875
No 105
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=87.21 E-value=1.4 Score=36.49 Aligned_cols=57 Identities=18% Similarity=0.078 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 27 DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 27 D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
-.+..++..+|+.|...-..|+.-. +.-+-..+.||.|++..||..|+..++.+|+-
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~--~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~ 95 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELA--DSAINAQLDLCEDEDVSIRRQAIKELPQFATG 95 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh
Confidence 3468888888888888888887532 45677788899999999999999988888874
No 106
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=86.80 E-value=6.4 Score=28.46 Aligned_cols=90 Identities=6% Similarity=0.026 Sum_probs=62.4
Q ss_pred hhHHHHhhHHHHHHh--cCCCCH-HHHHHHHHHHHccccccCc--chhhhhhHHHHHHhcCCC--ChHHHHHHHHhHHHH
Q psy13759 10 DGNFVSKSIKRTQDL--VADPNQ-HVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDE--CPEVRLNIISNLDCV 82 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L--~~D~s~-~VR~~~a~~l~~la~~lg~--e~~~~~llP~~~~LL~D~--e~EVR~~a~~~l~~~ 82 (114)
=+....+++|.+-.+ .+.-.. .+|..+|+.+..+|..+|. ......+...+.+-+.|+ ....+-.|+..+..
T Consensus 81 lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~- 159 (196)
T 4atg_A 81 IDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSI- 159 (196)
T ss_dssp CGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH-
Confidence 344455677777442 222222 8999999999999999997 444567888888888885 55556566555544
Q ss_pred HhhhChhhHhhhHhHHHHHHH
Q psy13759 83 NEVIGIQQDVSFKLGQVDRTS 103 (114)
Q Consensus 83 ~~~l~~~~i~~~iLP~i~~l~ 103 (114)
+|++.+..-++|.+....
T Consensus 160 ---lG~~~vr~~llP~l~~~~ 177 (196)
T 4atg_A 160 ---LSKNVVNTVIREHAEEYK 177 (196)
T ss_dssp ---HCHHHHHTHHHHHHHHHH
T ss_pred ---hHHHHHHHhhhcCHHHHH
Confidence 566777777889887654
No 107
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=86.23 E-value=1.5 Score=37.77 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHH
Q psy13759 29 NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVD 100 (114)
Q Consensus 29 s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~ 100 (114)
-.-||..+|+.++-+ .+++.+ -.++-.++..++..+||||-..+-.+.-+.+.+.. ...++|.+.
T Consensus 241 VAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~aVL 305 (800)
T 3oc3_A 241 VAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRKLV 305 (800)
T ss_dssp BCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHHHH
T ss_pred eeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHHHH
Confidence 347999999999999 899888 23444444566889999999999999888555542 344555543
No 108
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=85.85 E-value=4 Score=31.05 Aligned_cols=74 Identities=9% Similarity=0.024 Sum_probs=59.3
Q ss_pred hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759 10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 87 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~ 87 (114)
+++....+.-.+..+.++++.-.|-.+|+.++.+ +.. .....+..++.+|++-..++|+.+++..+-+++..=+
T Consensus 109 ~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~---~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 109 GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPL---EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBS---CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccc---cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 4445566888889999999999999999999998 222 2234688888999988899999999999999888654
No 109
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=85.46 E-value=5.3 Score=29.80 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=53.0
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
.+-.+|-+..|+.|.+.-||.++.+.+..+|..=++ ...++--.++=++|++-.|....-..+.++.-
T Consensus 179 v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 445788888999999999999999999999965444 34455556677889998888888877777653
No 110
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=85.08 E-value=2.6 Score=30.63 Aligned_cols=70 Identities=10% Similarity=-0.111 Sum_probs=48.3
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhH
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQD 91 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i 91 (114)
..+.+...+.|.+..+|..+...+ +.-. .+...+.+++++..+++|++.-||.++.-.|..+++. .++.+
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~--l~~~--~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-~p~~v 201 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQ--LKYK--QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-NPDVV 201 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTT--TTCG--GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-CHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH--HHHH--hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-CHHHH
Confidence 446666666666655555554433 2221 2233457888999999999999999999999998887 55443
No 111
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=83.41 E-value=3 Score=37.19 Aligned_cols=78 Identities=10% Similarity=0.114 Sum_probs=59.4
Q ss_pred HHHHhhHHHHHHhcCCC-----CHHHHHHHHHHHHccccccCcchh-hhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 12 NFVSKSIKRTQDLVADP-----NQHVKSALASVIMGLSPILGKHNT-VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 12 ~~~~~ilP~l~~L~~D~-----s~~VR~~~a~~l~~la~~lg~e~~-~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
.+.-.++|.+-.|...+ ...||+.++-.++...+.+..+.. -+.++..+++.+.|++++|+.+|+..+.++|+-
T Consensus 517 ~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~ 596 (1073)
T 3gjx_A 517 RFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQK 596 (1073)
T ss_dssp HHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 45666777777777544 567888877788887777654422 246677778888999999999999999999998
Q ss_pred hChh
Q psy13759 86 IGIQ 89 (114)
Q Consensus 86 l~~~ 89 (114)
.+..
T Consensus 597 C~~~ 600 (1073)
T 3gjx_A 597 CRRH 600 (1073)
T ss_dssp TGGG
T ss_pred HHHH
Confidence 7764
No 112
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=83.27 E-value=4.7 Score=27.67 Aligned_cols=77 Identities=13% Similarity=0.108 Sum_probs=53.0
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhh
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVS 93 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~ 93 (114)
...++|.+-.-.+|.||-|...++..+.... +.++|.+.+.++.++..=.-.++..+ ...++.+ ...
T Consensus 29 i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~ywil~~l---v~~~~~~-~~~ 95 (134)
T 3ut4_A 29 IEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWKYWVIKLM---IPYLIYP-NKQ 95 (134)
T ss_dssp HHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHHHHHHHHH---GGGCCHH-HHH
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHHHHHHHHH---HHcCCHH-HHH
Confidence 4568888899999999999999999988743 46778888887777766665555432 2333332 345
Q ss_pred hHhHHHHHHH
Q psy13759 94 FKLGQVDRTS 103 (114)
Q Consensus 94 ~iLP~i~~l~ 103 (114)
.+.|-+.+++
T Consensus 96 ~l~~eL~rl~ 105 (134)
T 3ut4_A 96 LVKSELERLS 105 (134)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666666654
No 113
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=82.73 E-value=2.3 Score=37.54 Aligned_cols=51 Identities=8% Similarity=0.006 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhc--CCCChHHHHHHHHhHHHH
Q psy13759 27 DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQL--KDECPEVRLNIISNLDCV 82 (114)
Q Consensus 27 D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL--~D~e~EVR~~a~~~l~~~ 82 (114)
+...|||.++...+..++... .+.+-+++..+. +++.+|||.+|...+-.-
T Consensus 489 ~~~~rvr~aAi~ALr~~~~~~-----p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t 541 (1056)
T 1lsh_A 489 EYSTRVQAEAIMALRNIAKRD-----PRKVQEIVLPIFLNVAIKSELRIRSCIVFFES 541 (1056)
T ss_dssp CSCHHHHHHHHHTTTTGGGTC-----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHhhhhc-----hHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 446799999999999988432 223445555555 558999999999887643
No 114
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=77.37 E-value=13 Score=30.84 Aligned_cols=67 Identities=9% Similarity=0.101 Sum_probs=52.6
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
..+.-+-..-.|+.|.+..||..+-..+..+|.. .....+.-++.+||+-+++.-+.++-+++..+.
T Consensus 62 l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sll 128 (507)
T 3u0r_A 62 LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDSAEFNLVNNALLSIF 128 (507)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 3455666777899999999999999999999976 336778889999999888777766666655443
No 115
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=76.87 E-value=21 Score=26.61 Aligned_cols=86 Identities=17% Similarity=0.130 Sum_probs=57.8
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHh
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDV 92 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~ 92 (114)
-...++-.++....-.. ..|...=....+++-.-.++ .-.+++|.++.+-.|++.|||+-.++=+.+.+.. ...+.
T Consensus 13 ~~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~ 88 (257)
T 3gs3_A 13 ARAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELL 88 (257)
T ss_dssp HHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHH
Confidence 34447777776655444 47776666666655332233 5578999999999999999999999988888743 22344
Q ss_pred hhHhHHHHHH
Q psy13759 93 SFKLGQVDRT 102 (114)
Q Consensus 93 ~~iLP~i~~l 102 (114)
...+|.+..|
T Consensus 89 ~~~l~~L~~L 98 (257)
T 3gs3_A 89 PHVINVVSML 98 (257)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 116
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=72.89 E-value=17 Score=24.42 Aligned_cols=77 Identities=9% Similarity=0.037 Sum_probs=55.0
Q ss_pred HHHhhHHHHHHhcCCCCHHHHHHHHHHH---Hccc-cccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh
Q psy13759 13 FVSKSIKRTQDLVADPNQHVKSALASVI---MGLS-PILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l---~~la-~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
-..+.+..+++-.+.++++|=..+-..+ .+=| ..|..+.....++..+.++++...++||.-+..-+..-+...+.
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3456777777777788888755432222 2222 45556777788888888888888999999999999988887754
Q ss_pred h
Q psy13759 89 Q 89 (114)
Q Consensus 89 ~ 89 (114)
+
T Consensus 119 ~ 119 (140)
T 3ldz_A 119 D 119 (140)
T ss_dssp C
T ss_pred C
Confidence 4
No 117
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=71.72 E-value=11 Score=33.54 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHccccccCcch-hhhhhHHHHHHhcCC------------CChHHHHHHHHhHHHHHhhhCh
Q psy13759 26 ADPNQHVKSALASVIMGLSPILGKHN-TVDHLLPLFLSQLKD------------ECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 26 ~D~s~~VR~~~a~~l~~la~~lg~e~-~~~~llP~~~~LL~D------------~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
+...+.+|+.....++.+++.+..+. ....++..++..+.| ...+||.+|...+..+|...+.
T Consensus 542 ~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~ 617 (1204)
T 3a6p_A 542 DTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQ 617 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34688899999998888888876432 223445555555555 3458999999999999988765
No 118
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=70.23 E-value=12 Score=31.81 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=54.5
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh----h-hhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV----D-HLLPLFLSQLKDECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~----~-~llP~~~~LL~D~e~EVR~~a~~~l~~~~~ 84 (114)
-++.+-.+++..+.+||+...+.+..++..-+.+.-. . .=+|.++.+|+|+.--+|-.++.-+..+++
T Consensus 123 ~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 123 NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR 195 (651)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc
Confidence 6888888999999999999999999999665543222 1 357999999999988889888877776665
No 119
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=67.54 E-value=7.4 Score=31.93 Aligned_cols=55 Identities=7% Similarity=0.022 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHccccccCc--chhhh-hhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759 29 NQHVKSALASVIMGLSPILGK--HNTVD-HLLPLFLSQLKDECPEVRLNIISNLDCVN 83 (114)
Q Consensus 29 s~~VR~~~a~~l~~la~~lg~--e~~~~-~llP~~~~LL~D~e~EVR~~a~~~l~~~~ 83 (114)
.+.+=.-+|..+++++++.|. ....+ ..=..+.+|+.++++|||..|+..+.++.
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 566777778888888877763 33222 46778899999999999999998887753
No 120
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=62.27 E-value=53 Score=25.93 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=54.2
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhh
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSF 94 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~ 94 (114)
..++-.++.....++ ..|...=....+++-.-.+ ..-.+++|.++++-.|.+.+||.-+++=+.+.|.. ..+ ....
T Consensus 25 ~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~e-l~~~ 100 (386)
T 3o2t_A 25 ERVVDLLNQAALITN-DSKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIE-LLLK 100 (386)
T ss_dssp HHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGG-GHHH
T ss_pred HHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHH-HHHH
Confidence 345666665444333 3566555555555422222 34579999999999999999999999999888863 222 3345
Q ss_pred HhHHHHHHH
Q psy13759 95 KLGQVDRTS 103 (114)
Q Consensus 95 iLP~i~~l~ 103 (114)
.++.+..|.
T Consensus 101 ~l~~L~~LL 109 (386)
T 3o2t_A 101 LIANLNMLL 109 (386)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 121
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=55.02 E-value=47 Score=22.58 Aligned_cols=75 Identities=8% Similarity=-0.000 Sum_probs=55.9
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHH---HHHccc-cccCcchhhhhhHHHHHHhcCC------CChHHHHHHHHhHHHHH
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALAS---VIMGLS-PILGKHNTVDHLLPLFLSQLKD------ECPEVRLNIISNLDCVN 83 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~---~l~~la-~~lg~e~~~~~llP~~~~LL~D------~e~EVR~~a~~~l~~~~ 83 (114)
-.+.+..++.-.+.++++|=..+-. .+.+=| ..|..+.....++..+.+++++ ..++||.-++.-+..-+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 4456667777777888888765333 333333 5666788888999999999986 47899999999999888
Q ss_pred hhhCh
Q psy13759 84 EVIGI 88 (114)
Q Consensus 84 ~~l~~ 88 (114)
...+.
T Consensus 126 ~~f~~ 130 (149)
T 3g2s_A 126 VGLPE 130 (149)
T ss_dssp HHCTT
T ss_pred HHhCC
Confidence 88754
No 122
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=52.11 E-value=63 Score=23.20 Aligned_cols=67 Identities=6% Similarity=0.081 Sum_probs=46.6
Q ss_pred HHHHH-hcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 19 KRTQD-LVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 19 P~l~~-L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
+.+.. ..+|..|..|.++.-...=++.... .+...+.++..+...+.|++.-||.++.-.|..+++.
T Consensus 111 ~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 111 DVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 34444 4456677778777733211122222 3445568899999999999999999999999888876
No 123
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=49.66 E-value=60 Score=22.23 Aligned_cols=76 Identities=13% Similarity=0.060 Sum_probs=53.9
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccc----cccCcchhhhhhHHHHHHhcCC-CChHHHHHHHHhHHHHHhhhCh
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLS----PILGKHNTVDHLLPLFLSQLKD-ECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la----~~lg~e~~~~~llP~~~~LL~D-~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
..+.+-.+++-++.++++|...+-..+..+. ..|..+.....++..+.++++. ..++||.-+..-+..-+...+.
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3445566766677888888775444333333 4455677778888888888877 5789999999988888877754
Q ss_pred h
Q psy13759 89 Q 89 (114)
Q Consensus 89 ~ 89 (114)
+
T Consensus 130 ~ 130 (163)
T 1x5b_A 130 D 130 (163)
T ss_dssp C
T ss_pred C
Confidence 3
No 124
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=49.42 E-value=1.1e+02 Score=26.24 Aligned_cols=90 Identities=11% Similarity=0.003 Sum_probs=65.8
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC--cchhhhhhHHHHHHhcCC---CChHHHHHHHHhHHHHHhh
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG--KHNTVDHLLPLFLSQLKD---ECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg--~e~~~~~llP~~~~LL~D---~e~EVR~~a~~~l~~~~~~ 85 (114)
+.+.+.++|.+....--++..|+..+...+..+|-.-+ .+.....++.-+-.-|.. +|++=-.++++.+..++..
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~ 413 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRF 413 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHH
Confidence 55777899999999999999999999999999994433 255555555555555655 8899788889999999887
Q ss_pred hChh-hHhhhHhHHHH
Q psy13759 86 IGIQ-QDVSFKLGQVD 100 (114)
Q Consensus 86 l~~~-~i~~~iLP~i~ 100 (114)
+-.. ....++.|.+.
T Consensus 414 lv~~~~yr~hl~~lL~ 429 (799)
T 1vsy_4 414 IVMDKLYRVHITNVLS 429 (799)
T ss_dssp HTTSTTGGGHHHHHHH
T ss_pred HhcCcccHHHHHHHHH
Confidence 7432 23445555543
No 125
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=49.37 E-value=31 Score=30.51 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=48.8
Q ss_pred CCCC--HHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh
Q psy13759 26 ADPN--QHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 26 ~D~s--~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
++.. |+.+..++..+..+.-.+. .....+.+..|++.+.|+.|.+|..+++.+.++...+.+
T Consensus 306 ~~~h~~Wk~~~~~~~~l~~l~~r~d-~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~~~k~ 369 (997)
T 1vsy_5 306 NEKDMGWKIRMFILRFVTQIQSNLE-SKPDKRAVFSIISQISTKHPEIIHLVVKSLLSTCNKIIS 369 (997)
T ss_dssp SSTTCCSCHHHHHHHHHHHHTCCSS-CCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred cCCChhHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5567 9999999988666663332 223456788999999999999999999999888887654
No 126
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=46.60 E-value=69 Score=22.10 Aligned_cols=76 Identities=8% Similarity=0.037 Sum_probs=56.7
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHH---ccc-cccCcchhhhhhHHHHHHhcCC------CChHHHHHHHHhHHHHH
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIM---GLS-PILGKHNTVDHLLPLFLSQLKD------ECPEVRLNIISNLDCVN 83 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~---~la-~~lg~e~~~~~llP~~~~LL~D------~e~EVR~~a~~~l~~~~ 83 (114)
..+.+-.+++-.+.++++|...+-..+. +=| ..|..+.....++..+.+++++ ...+||..++.-+..-+
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3456667777777889988874444333 333 5677788888999999999973 46899999999999998
Q ss_pred hhhChh
Q psy13759 84 EVIGIQ 89 (114)
Q Consensus 84 ~~l~~~ 89 (114)
...+.+
T Consensus 128 ~~f~~~ 133 (171)
T 1juq_A 128 MALPEE 133 (171)
T ss_dssp HHCTTC
T ss_pred HHcCCC
Confidence 888653
No 127
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=46.03 E-value=66 Score=21.68 Aligned_cols=75 Identities=9% Similarity=-0.017 Sum_probs=55.5
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHH---HHHccc-cccCcchhhhhhHHHHHHhcCC------CChHHHHHHHHhHHHHH
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALAS---VIMGLS-PILGKHNTVDHLLPLFLSQLKD------ECPEVRLNIISNLDCVN 83 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~---~l~~la-~~lg~e~~~~~llP~~~~LL~D------~e~EVR~~a~~~l~~~~ 83 (114)
..+.+-.++.-++.++++|-..+-. .+.+=| ..|..+.....++..+.+++++ ..++||.-++.-+..-+
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4455666766667888888764433 333333 5677888889999999999986 47899999999999888
Q ss_pred hhhCh
Q psy13759 84 EVIGI 88 (114)
Q Consensus 84 ~~l~~ 88 (114)
...+.
T Consensus 116 ~~f~~ 120 (148)
T 1mhq_A 116 VWFPE 120 (148)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 87754
No 128
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=44.52 E-value=61 Score=28.81 Aligned_cols=72 Identities=11% Similarity=0.037 Sum_probs=51.7
Q ss_pred HHHHhhHHHHHHhcC---CCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759 12 NFVSKSIKRTQDLVA---DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 85 (114)
Q Consensus 12 ~~~~~ilP~l~~L~~---D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~ 85 (114)
.+++.++..+..... +.+..||..+|..+..|+..-.++.. .+++|.+.++++. .+..+..++.-+..+++-
T Consensus 89 ~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Ee 163 (1204)
T 3a6p_A 89 YLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-PDMLIELDTLSKQ-GETQTELVMFILLRLAED 163 (1204)
T ss_dssp HHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence 456667777665432 36799999999999999987666555 4688888888876 445566666666666553
No 129
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=44.25 E-value=65 Score=24.32 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=44.3
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchh---hhhhHHHHHHhcCC-CChHHHHHHHHhHHHHH
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNT---VDHLLPLFLSQLKD-ECPEVRLNIISNLDCVN 83 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~---~~~llP~~~~LL~D-~e~EVR~~a~~~l~~~~ 83 (114)
+.+++.+.....+.+..+|-++|..+.+++-...++.. ...++..+.++++. ++.|+-.-++-.+..+.
T Consensus 190 ~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 190 ESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLI 262 (304)
T ss_dssp HHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 44777777777888999999999999998865543221 22355555566654 46666554444444444
No 130
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=43.45 E-value=24 Score=25.07 Aligned_cols=33 Identities=9% Similarity=-0.118 Sum_probs=29.4
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHcccccc
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPIL 47 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~l 47 (114)
..+++.+..+..|+++-||.++|-.+.+++..-
T Consensus 158 ~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~ 190 (220)
T 2b6c_A 158 DLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTN 190 (220)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhC
Confidence 557888899999999999999999999988663
No 131
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.26 E-value=1.1e+02 Score=21.92 Aligned_cols=76 Identities=14% Similarity=0.113 Sum_probs=55.1
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHcccc----ccCcchhhhhhHHHHHHhcCC-CChHHHHHHHHhHHHHHhhhCh
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSP----ILGKHNTVDHLLPLFLSQLKD-ECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~----~lg~e~~~~~llP~~~~LL~D-~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
..+.+..+++-++.++++|-..+-..+.-+.+ .+..+.....++..+.++++. ..++||.-++.-+..-+.....
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 45566777777778888887765444444433 355677778888888888866 4789999999999988887754
Q ss_pred h
Q psy13759 89 Q 89 (114)
Q Consensus 89 ~ 89 (114)
+
T Consensus 123 ~ 123 (226)
T 3zyq_A 123 E 123 (226)
T ss_dssp C
T ss_pred C
Confidence 4
No 132
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=33.91 E-value=1e+02 Score=21.72 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=51.8
Q ss_pred HHhhHHHHHHhcCCCCHHHHHHHHHHHHccc----cccCcchhhhhhHHHHHHhcCC-CChHHHHHHHHhHHHHHhhhCh
Q psy13759 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLS----PILGKHNTVDHLLPLFLSQLKD-ECPEVRLNIISNLDCVNEVIGI 88 (114)
Q Consensus 14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la----~~lg~e~~~~~llP~~~~LL~D-~e~EVR~~a~~~l~~~~~~l~~ 88 (114)
..+.+-.++.-++.++++|-..+-..+..+. ..+..+.....++..+..++++ ...+||..++.-+..-+...+.
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 3445566666667788888764444333332 4455677777788888888775 4789999999888888877653
No 133
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=32.17 E-value=47 Score=23.88 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=31.7
Q ss_pred hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccc
Q psy13759 10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPI 46 (114)
Q Consensus 10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~ 46 (114)
++.....++..+...+.|+.+.||.+++-.+.+++..
T Consensus 145 ~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 145 SESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp CHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 3566777999999999999999999999999887754
No 134
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=30.80 E-value=52 Score=17.28 Aligned_cols=26 Identities=8% Similarity=0.196 Sum_probs=18.5
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHc
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMG 42 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~ 42 (114)
+.-+++++..|....+|.++...+.+
T Consensus 8 l~~~fk~iY~~gddd~kram~KS~~e 33 (35)
T 2jtt_C 8 LMNVLKKIYEDGDDDMKRTINKAWVE 33 (35)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 55567777777777777777776654
No 135
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=28.60 E-value=25 Score=23.51 Aligned_cols=47 Identities=4% Similarity=0.104 Sum_probs=30.9
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHh
Q psy13759 17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQ 63 (114)
Q Consensus 17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~L 63 (114)
++..+..+++..+.+||..+.+.+..-+..++.+.....+.-.|-.|
T Consensus 86 Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~L 132 (140)
T 3ldz_A 86 FASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQLSLISAMIKNL 132 (140)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGTHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 44444444455788999999999999888887765444444444443
No 136
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=28.45 E-value=1.2e+02 Score=19.42 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=31.6
Q ss_pred hccCChhHHHHhhHHHHHHhcCCCCH--HHHHHHHHHHHcc
Q psy13759 5 LTINSDGNFVSKSIKRTQDLVADPNQ--HVKSALASVIMGL 43 (114)
Q Consensus 5 ~~~~~~~~~~~~ilP~l~~L~~D~s~--~VR~~~a~~l~~l 43 (114)
+|-+++++..++.+-.+.+..+|.+- .+|.++.+....|
T Consensus 7 ~~~~e~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L 47 (94)
T 2qzg_A 7 AKKLSPADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNAL 47 (94)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHT
T ss_pred hhhcchHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHH
Confidence 35578888899988899999999974 7999988866554
No 137
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=28.40 E-value=79 Score=21.42 Aligned_cols=35 Identities=11% Similarity=-0.047 Sum_probs=25.8
Q ss_pred hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHcccc
Q psy13759 11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSP 45 (114)
Q Consensus 11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~ 45 (114)
.....+|+..+-.-++|++|+|.+-+=..+.-++.
T Consensus 44 ~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~ 78 (140)
T 1vdy_A 44 VSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVG 78 (140)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHH
Confidence 34457788888888888888887777777777664
No 138
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=27.91 E-value=2.8e+02 Score=23.51 Aligned_cols=42 Identities=24% Similarity=0.137 Sum_probs=32.7
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHhH
Q psy13759 55 HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLG 97 (114)
Q Consensus 55 ~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP 97 (114)
+-++.+++||+.++..||..+++-+..++..=+.. .-+.|+.
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~-~Q~~Il~ 163 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQ-VQQIILV 163 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHH-HHHHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHH-HHHHHHh
Confidence 46899999999999999999999999888765442 3344443
No 139
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=27.87 E-value=52 Score=23.46 Aligned_cols=60 Identities=8% Similarity=0.046 Sum_probs=40.6
Q ss_pred HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHH
Q psy13759 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81 (114)
Q Consensus 15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~ 81 (114)
..+++.+..+..|++..||.++|-.|.+++...+. .+.+.+.+= .=..-.+.-|++.++.
T Consensus 165 ~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~-----~v~~fl~~~--~l~~~~~r~A~k~l~~ 224 (232)
T 3jxy_A 165 ELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPD-----VVWEYVQNN--ELAPLSKREAIKHIKQ 224 (232)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHH-----HHHHHHHHS--CCCHHHHHHHTTTTHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHH-----HHHHHHHHC--CCCHHHHHHHHHhccc
Confidence 35777888899999999999999999998866332 223333321 2345566666666654
No 140
>3nke_A Protein YGBT; crispr, CAS1, nuclease, DNA recombination, DNA repair, system; 1.40A {Escherichia coli}
Probab=24.07 E-value=86 Score=22.53 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=26.7
Q ss_pred HHHHHHhc----CCCChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHHHHH
Q psy13759 57 LPLFLSQL----KDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTS 103 (114)
Q Consensus 57 lP~~~~LL----~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~~l~ 103 (114)
.|....+. .|.+.|||..+...+.. ..+...+++.++++.
T Consensus 138 d~~~f~l~~~~~~~~~~~~R~~~~~~~~~-------~~ll~~mi~~i~~ll 181 (200)
T 3nke_A 138 VPKAFEIARRNPGEPDREVRLACRDIFRS-------SKTLAKLIPLIEDVL 181 (200)
T ss_dssp HHHHHHHHHHCCSSHHHHHHHHHHHHHHH-------HTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHH-------hCHHHHHHHHHHHHH
Confidence 34444444 46789999998887764 345567777777664
No 141
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=23.89 E-value=3.1e+02 Score=24.03 Aligned_cols=66 Identities=6% Similarity=0.032 Sum_probs=46.8
Q ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759 18 IKRTQDLV--ADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 89 (114)
Q Consensus 18 lP~l~~L~--~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~ 89 (114)
-+.+-.+. .+....||.++...+++-.+.. ..+--+...+-.|+..+|+.-+.+.|..+++.-.|.
T Consensus 514 ~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~ 581 (1056)
T 1lsh_A 514 QEIVLPIFLNVAIKSELRIRSCIVFFESKPSV------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE 581 (1056)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHCcCH------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcc
Confidence 33344444 4567899999999998755322 334455555667789999999999999999877663
No 142
>3god_A CAS1; crispr, metallonuclease, DNAse, prokaryotic immune system, immune system; 2.17A {Pseudomonas aeruginosa}
Probab=22.31 E-value=1.5e+02 Score=22.58 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=38.1
Q ss_pred HHHHHHHHHccccccCcchhhhhhHHHHHHhcC--CCChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHHHHHHH
Q psy13759 33 KSALASVIMGLSPILGKHNTVDHLLPLFLSQLK--DECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTSFL 105 (114)
Q Consensus 33 R~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~--D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~~l~~~ 105 (114)
|.++|-.++++= -+.. +.|....+.+ |.+.|+|..+...+.+ ..+...+++.+++++--
T Consensus 263 R~SLalDlaE~f---Kp~i----v~~~aF~~~~~~~~~~~~R~~~~~~~~~-------~~~l~~~~~~i~~~~~~ 323 (328)
T 3god_A 263 RGGLVFDVADLI---KDSL----ILPQAFLSAMRGDEEQDFRQACLDNLSR-------AQALDFMIDTLKDVAQR 323 (328)
T ss_dssp TTHHHHHHHTTT---TTTT----HHHHHHHHHHHTCCHHHHHHHHHHHHHH-------TTHHHHHHHHHHHHHHH
T ss_pred CcccHHHhHHHH---HHHH----hHHHHHHHHhcCCchHHHHHHHHHHHHH-------cCHHHHHHHHHHHHHHH
Confidence 456666555433 2222 4565555543 6789999999877765 34567788888887743
No 143
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=21.00 E-value=2e+02 Score=19.32 Aligned_cols=75 Identities=4% Similarity=0.017 Sum_probs=50.0
Q ss_pred HHhhHHHHHHhcC-CCCHHHHHHHHH---HHHccc-cccCcchhhhhhHHH-HHHhcCC---CChHHHHHHHHhHHHHHh
Q psy13759 14 VSKSIKRTQDLVA-DPNQHVKSALAS---VIMGLS-PILGKHNTVDHLLPL-FLSQLKD---ECPEVRLNIISNLDCVNE 84 (114)
Q Consensus 14 ~~~ilP~l~~L~~-D~s~~VR~~~a~---~l~~la-~~lg~e~~~~~llP~-~~~LL~D---~e~EVR~~a~~~l~~~~~ 84 (114)
..+.+-.+++-.+ .++++|...+-. .+.+=| ..+..+.....++.. +++++.+ ...+||..++.-+..-+.
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 3445555655554 678887754333 333333 556677877888887 6787743 456999999999988888
Q ss_pred hhCh
Q psy13759 85 VIGI 88 (114)
Q Consensus 85 ~l~~ 88 (114)
..+.
T Consensus 131 ~f~~ 134 (157)
T 1elk_A 131 AFRS 134 (157)
T ss_dssp HHTT
T ss_pred HcCC
Confidence 7753
Done!