RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13759
(114 letters)
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 78.1 bits (192), Expect = 2e-18
Identities = 60/69 (86%), Positives = 67/69 (97%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389
Query: 82 VNEVIGIQQ 90
VNEVIGI+Q
Sbjct: 390 VNEVIGIRQ 398
Score = 45.4 bits (107), Expect = 7e-07
Identities = 15/77 (19%), Positives = 34/77 (44%)
Query: 18 IKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS 77
+ ++L +D V+ A AS + + +L N ++P+F + DE VRL +
Sbjct: 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVE 225
Query: 78 NLDCVNEVIGIQQDVSF 94
+ +++ + +
Sbjct: 226 ACVNIAQLLPQEDLEAL 242
Score = 43.5 bits (102), Expect = 3e-06
Identities = 20/90 (22%), Positives = 34/90 (37%)
Query: 1 MKLLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLF 60
+K L+ + I + + DPN + I LS + G+ T H+LP
Sbjct: 465 LKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTV 524
Query: 61 LSQLKDECPEVRLNIISNLDCVNEVIGIQQ 90
L D VR N+ +L + ++
Sbjct: 525 LRMAGDPVANVRFNVAKSLQKIGPILDNST 554
Score = 40.4 bits (94), Expect = 3e-05
Identities = 15/66 (22%), Positives = 25/66 (37%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
+ D + V+ +A L +G T L+P F + +KD EVR +
Sbjct: 248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 307
Query: 82 VNEVIG 87
E +
Sbjct: 308 FCENLS 313
Score = 38.5 bits (89), Expect = 1e-04
Identities = 9/72 (12%), Positives = 28/72 (38%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
+L +D V+ + ++ +L + + ++P +D+ VR +
Sbjct: 209 SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTE 268
Query: 82 VNEVIGIQQDVS 93
+ + +G + +
Sbjct: 269 LQKAVGPEITKT 280
Score = 38.5 bits (89), Expect = 2e-04
Identities = 18/80 (22%), Positives = 32/80 (40%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
+L D V+ A+ + L+ LG + L L ++ L D +R SNL
Sbjct: 408 VELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKK 467
Query: 82 VNEVIGIQQDVSFKLGQVDR 101
+ E G + + + +V
Sbjct: 468 LVEKFGKEWAHATIIPKVLA 487
Score = 33.8 bits (77), Expect = 0.006
Identities = 14/66 (21%), Positives = 22/66 (33%)
Query: 25 VADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 84
V ALA + + ++G V LLP S E VR + +L ++
Sbjct: 57 TIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISH 116
Query: 85 VIGIQQ 90
Sbjct: 117 EHSPSD 122
Score = 33.8 bits (77), Expect = 0.007
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 23 DLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82
+ D V+ + S + ++ ++G LLP + +D VRL II + +
Sbjct: 370 AQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLL 429
Query: 83 NEVIG 87
+G
Sbjct: 430 AGQLG 434
Score = 33.5 bits (76), Expect = 0.009
Identities = 11/61 (18%), Positives = 24/61 (39%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
+ DP +V+ +A + + PIL + P+ +D+ +V+ L
Sbjct: 525 LRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTV 584
Query: 82 V 82
+
Sbjct: 585 L 585
Score = 32.3 bits (73), Expect = 0.023
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNT----VDHLLPLFLSQLKDECPEVRLNIIS 77
Q+L+ D V++A + + L + +LP + D V+ + S
Sbjct: 287 QNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALAS 346
Query: 78 NLDCVNEVIGIQQ 90
+ ++ ++G
Sbjct: 347 VIMGLSPILGKDN 359
Score = 32.3 bits (73), Expect = 0.024
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 18 IKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS 77
I D + + + ++ + ++ LG T LLP + DE EV L +
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-DEVLLALAE 70
Query: 78 NLDCVNEVIGIQQDVS 93
L ++G + V
Sbjct: 71 QLGTFTTLVGGPEYVH 86
Score = 29.6 bits (66), Expect = 0.20
Identities = 13/66 (19%), Positives = 26/66 (39%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
+ D ++ A S + L GK ++P L+ D R+ + ++
Sbjct: 447 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 506
Query: 82 VNEVIG 87
++EV G
Sbjct: 507 LSEVCG 512
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive
structure, iron sulfur proteins, nitrogen fixation;
2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Length = 244
Score = 39.9 bits (93), Expect = 4e-05
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 16/58 (27%)
Query: 23 DLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD 80
+L+ DP+ V+ A +H L +L + PEVRL I L
Sbjct: 201 ELLHDPDWTVRLAAV----------------EHASLEALRELDEPDPEVRLAIAGRLG 242
Score = 34.1 bits (78), Expect = 0.005
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 24 LVADPNQHVKSALASVI-MGLSPILGKH-------NTVDHLLPLFLSQL-KDECPEVRLN 74
+ AD + V++ + I G + L L + +D PEVR
Sbjct: 130 MAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRI 189
Query: 75 IISNLD 80
+ S L
Sbjct: 190 VASRLR 195
Score = 28.7 bits (64), Expect = 0.32
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 15/59 (25%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD 80
+ADP ++ +++ V+ L PL ++D VR + L
Sbjct: 56 VQYLADPFWERRAIAV-----------RYSPVEALTPL----IRDSDEVVRRAVAYRLP 99
Score = 26.8 bits (59), Expect = 1.6
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 15/57 (26%)
Query: 24 LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD 80
L+ D ++ V+ A+A + + L L + DE EVR+ + L
Sbjct: 82 LIRDSDEVVRRAVAYRL-----------PREQLSAL----MFDEDREVRITVADRLP 123
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan
synthesis, cell WALL biogenesis/degradation, secreted,
cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis}
PDB: 2vfw_A* 2vg1_A*
Length = 227
Score = 29.4 bits (67), Expect = 0.19
Identities = 3/31 (9%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 53 VDHLLPLFLSQLKDECPE---VRLNIISNLD 80
+ L+ + +++ C + + +L
Sbjct: 68 LAALIEIITDVVEEICAPANHWSVRTVGDLG 98
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 28.5 bits (63), Expect = 0.44
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRL 73
++ ++ +++ N+ K + I + K V+ LP ++ L D VR
Sbjct: 142 MASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFK--YVNPFLPRIINLLHDGDEIVRA 199
Query: 74 NII 76
+ +
Sbjct: 200 SAV 202
Score = 25.4 bits (55), Expect = 5.5
Identities = 6/59 (10%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 24 LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82
L + +A ++ + V ++P+ + + + ++N+ L+ +
Sbjct: 78 LKKSEAIPLTQEIAKAFGQMAKEKPEL--VKSMIPVLFANYRIGDEKTKINVSYALEEI 134
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.70
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 43 LSPILGKHNTVDH--LLP----LFLSQLKDE 67
P+ H +++H L+P SQL+++
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQ 36
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription,
transcriptio regulation; 1.58A {Porphyromonas
gingivalis}
Length = 232
Score = 26.9 bits (60), Expect = 1.3
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 55 HLLPLFLSQLKDECPEVRLNI 75
+LLP K E + +++
Sbjct: 24 YLLPRVFPIWKKELAGLEIHV 44
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type
transcriptional regulator, LTTR, redox, structural
genomics, OPPF; 2.39A {Neisseria meningitidis}
Length = 219
Score = 26.9 bits (60), Expect = 1.3
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 55 HLLPLFLSQLKDECPEVRLNI 75
+LLP + L+ P++ L +
Sbjct: 17 YLLPKLIVSLRRTAPKMPLML 37
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 26.9 bits (59), Expect = 1.5
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 8 NSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDE 67
N+ S + + + +V +AL I + +++ + L ++
Sbjct: 90 KRFSNYASACVPSLLEKFKEKKPNVVTALREAID----AIYASTSLEAQQESIVESLSNK 145
Query: 68 CPEVR---LNIISNL 79
P V+ I+
Sbjct: 146 NPSVKSETALFIARA 160
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR
regulatory domain, oxidized form, transcription; 2.30A
{Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Length = 219
Score = 26.4 bits (59), Expect = 1.9
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 55 HLLPLFLSQLKDECPEVRLNI 75
+LLP + L P++ + +
Sbjct: 18 YLLPHIIPMLHQTFPKLEMYL 38
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 27.0 bits (58), Expect = 1.9
Identities = 8/67 (11%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDECPEVR 72
+ R + + + + +S++ + + + + + + FL L+D VR
Sbjct: 964 ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVR 1023
Query: 73 LNIISNL 79
+
Sbjct: 1024 RVALVTF 1030
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 26.3 bits (58), Expect = 2.2
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQ-LKDECPEVRLNII 76
+ +D N + L I D++ + + L D+ VR I
Sbjct: 60 IEFCSDKNYIRRDI---GAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAI 112
Score = 24.8 bits (54), Expect = 8.3
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 23 DLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNL 79
+L+ DPN V++ A+ + ++ + D + + L+D+ EVR+ I L
Sbjct: 166 NLLKDPNGDVRNW-AAFAININKY-DNSDIRDCFVEM----LQDKNEEVRIEAIIGL 216
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein
binding; HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 25.8 bits (57), Expect = 3.1
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVR 72
+ ++ + D + +V+ A A LGK + PL + LKDE VR
Sbjct: 19 EKVEMYIKNLQDDSYYVRRAAAYA-------LGKIGDERAVEPL-IKALKDEDAWVR 67
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor,
virulence factor; 2.40A {Yersinia pseudotuberculosis}
Length = 238
Score = 25.8 bits (57), Expect = 3.7
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 52 TVDHLLPLFLSQLKDECPEVRLNIIS 77
T D LLP L+++ P + +++
Sbjct: 37 TADTLLPFLLNRVATLYPRLAIDVRV 62
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional
regulator LYSR struc genomics, PSI-2, protein structure
initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Length = 238
Score = 25.2 bits (56), Expect = 5.2
Identities = 4/39 (10%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 38 SVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNII 76
S+ + ++P + + ++ P + L +
Sbjct: 31 SLRIAVTPTFT-----SYFIGPLMADFYARYPSITLQLQ 64
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Length = 1180
Score = 25.7 bits (56), Expect = 5.3
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 25 VADPNQ--HVKSALASVIMGLSPI-LGKHNTVDHLLPLFLSQLKD 66
V P + ++SALA+ +MGL+ + + N +H + + +
Sbjct: 603 VMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDG 647
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 25.5 bits (55), Expect = 5.5
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKH--NTVDHLLPLFLSQLKDECPEVRLNIISNL 79
+ ++S + + + +D + + DE PEVR N+ L
Sbjct: 180 LQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRAL 239
Query: 80 D 80
Sbjct: 240 V 240
Score = 25.1 bits (54), Expect = 6.2
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 35 ALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVR 72
L ++ G + + + L+P + L D+ VR
Sbjct: 382 VLGAIAEGCMQGMIPY--LPELIPHLIQCLSDKKALVR 417
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 25.5 bits (55), Expect = 5.7
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 35 ALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVR 72
A S++ G + + V LP L+ + D+ +V+
Sbjct: 392 AFGSIMDGPDKVQRTYY-VHQALPSILNLMNDQSLQVK 428
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314,
rhodococcus RHA1, structural genomics, PSI-2; HET: MSE;
2.05A {Rhodococcus SP}
Length = 209
Score = 24.9 bits (55), Expect = 6.2
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 5/35 (14%)
Query: 42 GLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNII 76
G P LG +LP L E P +
Sbjct: 10 GCYPALG-----PTILPSMLYAFTAEYPRASVEFR 39
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein
binding; 1.80A {Synthetic}
Length = 201
Score = 25.0 bits (55), Expect = 6.5
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 23 DLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVR 72
+ D + +V+ A A LGK + PL + LKDE VR
Sbjct: 21 KNLQDDSYYVRRAAAYA-------LGKIGDERAVEPL-IKALKDEDAWVR 62
Score = 24.6 bits (54), Expect = 7.7
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 57 LPLFLSQLKDECPEVRLNIISNL 79
+ +++ L+D+ VR L
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYAL 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.378
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,522,626
Number of extensions: 75789
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 53
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)