RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13759
(114 letters)
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 44.0 bits (102), Expect = 6e-07
Identities = 20/87 (22%), Positives = 34/87 (39%)
Query: 1 MKLLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLF 60
+K L+ + I + + DPN + I LS + G+ T H+LP
Sbjct: 465 LKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTV 524
Query: 61 LSQLKDECPEVRLNIISNLDCVNEVIG 87
L D VR N+ +L + ++
Sbjct: 525 LRMAGDPVANVRFNVAKSLQKIGPILD 551
Score = 38.6 bits (88), Expect = 6e-05
Identities = 14/59 (23%), Positives = 22/59 (37%)
Query: 32 VKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ 90
V ALA + + ++G V LLP S E VR + +L ++
Sbjct: 64 VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD 122
Score = 33.6 bits (75), Expect = 0.003
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 23 DLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82
D + + + ++ + ++ LG T LLP + DE EV L + L
Sbjct: 17 DELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-DEVLLALAEQLGTF 75
Query: 83 NEVIGIQQDVS 93
++G + V
Sbjct: 76 TTLVGGPEYVH 86
Score = 32.1 bits (71), Expect = 0.009
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 24 LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVR 72
+ DP +V+ +A + + PIL + P+ +D+ +V+
Sbjct: 527 MAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVK 575
Score = 30.9 bits (68), Expect = 0.027
Identities = 18/87 (20%), Positives = 31/87 (35%)
Query: 1 MKLLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLF 60
M LL F K + D ++ A S + L GK ++P
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485
Query: 61 LSQLKDECPEVRLNIISNLDCVNEVIG 87
L+ D R+ + ++ ++EV G
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCG 512
Score = 27.1 bits (58), Expect = 0.50
Identities = 8/36 (22%), Positives = 22/36 (61%)
Query: 55 HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ 90
+ + + + +L++E ++RLN I L + +G+++
Sbjct: 10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVER 45
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter
vinelandii [TaxId: 354]}
Length = 233
Score = 40.1 bits (93), Expect = 1e-05
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 16/56 (28%)
Query: 24 LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNL 79
L+ DP+ V+ A +H L +L + PEVRL I L
Sbjct: 194 LLHDPDWTVRLAAV----------------EHASLEALRELDEPDPEVRLAIAGRL 233
Score = 33.9 bits (77), Expect = 0.002
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 15/58 (25%)
Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNL 79
+ADP ++ +++ V+ L PL ++D VR + L
Sbjct: 48 VQYLADPFWERRAIAV-----------RYSPVEALTPL----IRDSDEVVRRAVAYRL 90
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
(Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 31.3 bits (69), Expect = 0.022
Identities = 8/64 (12%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 18 IKRTQDLVADPNQHVKSALASVIMGLSPILGKHNT--VDHLLPLFLSQLKDECPEVRLNI 75
+ R + + + + +S++ + + + + + + FL L+D VR
Sbjct: 964 LPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVA 1023
Query: 76 ISNL 79
+
Sbjct: 1024 LVTF 1027
Score = 24.7 bits (52), Expect = 3.6
Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEV 71
+V + ++ +A + L+ I + LLP L
Sbjct: 924 PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID-----PETLLPRLKGYLISGSSYA 978
Query: 72 RLNIISNL 79
R ++++ +
Sbjct: 979 RSSVVTAV 986
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 29.7 bits (65), Expect = 0.078
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEV 71
N ++ + QD + + Q + L + + + +P+ + L E V
Sbjct: 665 NILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC--IADFMPILGTNLNPEFISV 722
Query: 72 RLNIISNLDCVNEVIGIQ 89
N + ++ +GI+
Sbjct: 723 CNNATWAIGEISIQMGIE 740
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 28.6 bits (62), Expect = 0.14
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 1 MKLLLTINSDGNFVSKSIKRTQDLVADPNQHVKSA----LASVIMGLSPILGKHNTVDHL 56
+LL + + V + ++ + +P+ + A ++ G P K V
Sbjct: 350 CLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK-PLVIQA 408
Query: 57 LPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQD 91
+P + +KD VR + + E++
Sbjct: 409 MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI 443
>d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR
{Ralstonia eutropha [TaxId: 106590]}
Length = 205
Score = 28.3 bits (61), Expect = 0.18
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 55 HLLPLFLSQLKDECPEVRLNII 76
LPL L P +++
Sbjct: 15 RSLPLLLRAFLTSTPTATVSLT 36
>d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type
activator OxyR, regulatory domain {Escherichia coli
[TaxId: 562]}
Length = 212
Score = 28.2 bits (61), Expect = 0.19
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 42 GLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNII 76
GL P +G +LLP + L P++ + +
Sbjct: 10 GLIPTVG-----PYLLPHIIPMLHQTFPKLEMYLH 39
>d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl
{Escherichia coli [TaxId: 562]}
Length = 220
Score = 27.0 bits (58), Expect = 0.42
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 55 HLLPLFLSQLKDECPEVRLNII 76
+ LP + ++ PEVRL +I
Sbjct: 19 YSLPEVIKAFRELFPEVRLELI 40
>d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type
protein CysB {Klebsiella aerogenes [TaxId: 28451]}
Length = 237
Score = 26.9 bits (58), Expect = 0.49
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 55 HLLPLFLSQLKDECPEVRLNII 76
+ LP + + P V L++
Sbjct: 19 YALPGVIKGFIERYPRVSLHMH 40
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia
coli [TaxId: 562]}
Length = 276
Score = 26.7 bits (57), Expect = 0.71
Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 8/76 (10%)
Query: 24 LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 83
L+ D N + + A V L D + L + D+ R L +
Sbjct: 27 LLDDHNSLKRISSARV-------LQLRGGQD-AVRLAIEFCSDKNYIRRDIGAFILGQIK 78
Query: 84 EVIGIQQDVSFKLGQV 99
+ +V L +
Sbjct: 79 ICKKCEDNVFNILNNM 94
>d2esna2 c.94.1.1 (A:92-303) Probable LysR-type transcriptional
regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Length = 212
Score = 26.6 bits (57), Expect = 0.75
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 55 HLLPLFLSQLKDECPEVRLNII 76
LLP +++L+ P VRL ++
Sbjct: 21 ALLPPLMNRLQHSAPGVRLRLV 42
>d1utha_ c.94.1.1 (A:) LysR-type regulatory protein DntR
{Burkholderia sp. [TaxId: 36773]}
Length = 219
Score = 26.6 bits (57), Expect = 0.77
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 55 HLLPLFLSQLKDECPEVRLNII 76
+ +P + L P ++++ +
Sbjct: 25 YFMPPLMEALAQRAPHIQISTL 46
>d2pw6a1 c.56.6.1 (A:14-271) Uncharacterized protein YgiD
{Escherichia coli [TaxId: 562]}
Length = 258
Score = 25.8 bits (56), Expect = 1.3
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 50 HNTVDHLLPLF 60
+ T +H LPL
Sbjct: 216 NPTPEHYLPLL 226
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 24.4 bits (52), Expect = 5.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 34 SALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS 77
A A++I + + + D LL FL DE +V+L +++
Sbjct: 440 DARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLT 483
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.378
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 357,413
Number of extensions: 13427
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 26
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)