BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13760
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 88/147 (59%), Gaps = 9/147 (6%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPL-KVEGPGEKGPLVQEEGLLSYGEICSQLAS-- 105
NK+ L + TYG W + KD+ G+P + + GP +G Q+ GLLSY EIC +L++
Sbjct: 270 NKINLGVATYGNAWKLTKDSGLEGVPVVPETSGPAPEGFQSQKPGLLSYAEICGKLSNPQ 329
Query: 106 --LTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQ 163
N SP LRRV D KR G A+R + Q+ + GIWVSY+DP++ KAAYA+
Sbjct: 330 NQFLKGNESP--LRRVSDPTKRFGGIAYRPVDGQITE--GIWVSYDDPDSASNKAAYARV 385
Query: 164 NGLAGVAMVDLSLDDFKGNCGENDYHI 190
L GVA+ DLS DDF+G C + Y I
Sbjct: 386 KNLGGVALFDLSYDDFRGQCSGDKYPI 412
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 179 FKGNCGENDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDLNIILGVGGFE--DQKDK 236
+ G GEN S+++ LD K++ + +VT+LK YP L ++L VGG D
Sbjct: 40 YAGLRGEN-LQAYSMNENLDIYKHQ----FSEVTSLKRKYPHLKVLLSVGGDHDIDPDHP 94
Query: 237 EKYLDL 242
KY+DL
Sbjct: 95 NKYIDL 100
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 24/140 (17%)
Query: 48 VNKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLT 107
NKL++ IPT+GR++ + ++R G P + GPG G +E+G+L+Y EIC L T
Sbjct: 229 ANKLVMGIPTFGRSYTLASSSTRVGAP---ISGPGIPGQFTKEKGILAYYEICDFLHGAT 285
Query: 108 DANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLA 167
T+ FR + WV+Y+D E+V KA Y K LA
Sbjct: 286 --------------------THRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLA 325
Query: 168 GVAMVDLSLDDFKGN-CGEN 186
G + L LDDF+G CG+N
Sbjct: 326 GAMVWALDLDDFRGTFCGQN 345
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 24/140 (17%)
Query: 48 VNKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLT 107
NKL++ IPT+GR++ + + G P V GPG G +E+G+L+Y EIC L T
Sbjct: 229 ANKLVMGIPTFGRSFTLASSKTDVGAP---VSGPGVPGRFTKEKGILAYYEICDFLHGAT 285
Query: 108 DANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLA 167
T+ FR + WV+Y+D E+V KA Y K LA
Sbjct: 286 --------------------THRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLA 325
Query: 168 GVAMVDLSLDDFKGN-CGEN 186
G + L LDDF+G CG+N
Sbjct: 326 GAMVWALDLDDFRGTFCGQN 345
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 24/140 (17%)
Query: 48 VNKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLT 107
NKL++ IPT+GR++ + + G P V GPG G +E+G+L+Y EIC L T
Sbjct: 229 ANKLVMGIPTFGRSFTLASSKTDVGAP---VSGPGIPGRFTKEKGILAYYEICDFLHGAT 285
Query: 108 DANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLA 167
T+ FR + WV+Y+D E+V KA Y K LA
Sbjct: 286 --------------------THRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLA 325
Query: 168 GVAMVDLSLDDFKGN-CGEN 186
G + L LDDF+G CG+N
Sbjct: 326 GAMVWALDLDDFRGTFCGQN 345
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 68/140 (48%), Gaps = 24/140 (17%)
Query: 48 VNKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLT 107
NKL++ IPT+GR++ + + G P + GPG G +E+G+L+Y EIC L T
Sbjct: 229 ANKLVMGIPTFGRSFTLASSKTDVGAP---ISGPGIPGRFTKEKGILAYYEICDFLHGAT 285
Query: 108 DANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLA 167
T+ FR + WV+Y+D E+V KA Y K LA
Sbjct: 286 --------------------THRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLA 325
Query: 168 GVAMVDLSLDDFKGN-CGEN 186
G + L LDDF+G CG+N
Sbjct: 326 GAMVWALDLDDFRGTFCGQN 345
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 68/140 (48%), Gaps = 24/140 (17%)
Query: 48 VNKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLT 107
NKL++ IPT+GR++ + + G P + GPG G +E+G+L+Y EIC L T
Sbjct: 229 ANKLVMGIPTFGRSFTLASSKTDGGAP---ISGPGIPGRFTKEKGILAYYEICDFLHGAT 285
Query: 108 DANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLA 167
T+ FR + WV+Y+D E+V KA Y K LA
Sbjct: 286 --------------------THRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLA 325
Query: 168 GVAMVDLSLDDFKGN-CGEN 186
G + L LDDF+G CG+N
Sbjct: 326 GAMVWALDLDDFRGTFCGQN 345
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 68/140 (48%), Gaps = 24/140 (17%)
Query: 48 VNKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLT 107
NKL++ IPT+GR++ + + G P + GPG G +E+G+L+Y EIC L T
Sbjct: 229 ANKLVMGIPTFGRSFTLASSKTDGGAP---ISGPGIPGRFTKEKGILAYYEICDFLHGAT 285
Query: 108 DANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLA 167
T+ FR + WV+Y+D E+V KA Y K LA
Sbjct: 286 --------------------THRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLA 325
Query: 168 GVAMVDLSLDDFKGN-CGEN 186
G + L LDDF+G CG+N
Sbjct: 326 GAMVWALDLDDFRGTFCGQN 345
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 68/140 (48%), Gaps = 24/140 (17%)
Query: 48 VNKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLT 107
NKL++ IPT+G+++ + + G P V GPG G +E+G+L+Y EIC L T
Sbjct: 229 ANKLVMGIPTFGKSFTLASSKTDVGAP---VSGPGIPGQFTKEKGILAYYEICDFLQGAT 285
Query: 108 DANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLA 167
T+ FR + WV+Y+D E+V KA Y K LA
Sbjct: 286 --------------------THRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLA 325
Query: 168 GVAMVDLSLDDFKGN-CGEN 186
G + L LDDF+G CG+N
Sbjct: 326 GAMVWALDLDDFRGTFCGQN 345
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 24/140 (17%)
Query: 48 VNKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLT 107
NKL++ IPT+GR++ + + G P + GPG G +E+G L+Y EIC L T
Sbjct: 229 ANKLVMGIPTFGRSYTLASSKTDVGAP---ISGPGIPGQFTKEKGTLAYYEICDFLHGAT 285
Query: 108 DANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLA 167
T+ FR + WV+Y+D E+V KA Y K LA
Sbjct: 286 --------------------THRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLA 325
Query: 168 GVAMVDLSLDDFKGN-CGEN 186
G + L LDDF+G CG+N
Sbjct: 326 GAMVWALDLDDFRGTFCGQN 345
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 24/140 (17%)
Query: 48 VNKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLT 107
NKL++ IPT+GR++ + + G P + GPG G + +G+L+Y EIC L T
Sbjct: 229 ANKLVMGIPTFGRSYTLASSKTDVGAP---ISGPGIPGRFTKWKGILAYYEICDFLHGAT 285
Query: 108 DANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLA 167
T+ FR + WV+Y+D E+V KA Y K LA
Sbjct: 286 --------------------THRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLA 325
Query: 168 GVAMVDLSLDDFKGN-CGEN 186
G + L LDDF+G CG+N
Sbjct: 326 GAMVWALDLDDFRGTFCGQN 345
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 27/153 (17%)
Query: 48 VNKLILAIPTYGRTWVINKDT-SRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASL 106
+KLIL +PTYGR++ + + +R G P G G GP +E G+L+Y E+CS +
Sbjct: 236 ASKLILGMPTYGRSFTLASSSDTRVGAP---ATGSGTPGPFTKEGGMLAYYEVCSWKGA- 291
Query: 107 TDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGL 166
T +R+ D + Y FR + Q WV ++D E+ K +Y KQ GL
Sbjct: 292 --------TKQRIQDQKV---PYIFR--DNQ-------WVGFDDVESFKTKVSYLKQKGL 331
Query: 167 AGVAMVDLSLDDFKG-NCGENDYH-IKSLDKEL 197
G + L LDDF G +C + Y I++L +EL
Sbjct: 332 GGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 364
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 27/153 (17%)
Query: 48 VNKLILAIPTYGRTWVINKDT-SRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASL 106
+KLIL +PTYGR++ + + +R G P G G GP +E G+L+Y E+CS +
Sbjct: 236 ASKLILGMPTYGRSFTLASSSDTRVGAP---ATGSGTPGPFTKEGGMLAYYEVCSWKGA- 291
Query: 107 TDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGL 166
T +R+ D + Y FR + Q WV ++D E+ K +Y KQ GL
Sbjct: 292 --------TKQRIQDQKV---PYIFR--DNQ-------WVGFDDVESFKTKVSYLKQKGL 331
Query: 167 AGVAMVDLSLDDFKG-NCGENDYH-IKSLDKEL 197
G + L LDDF G +C + Y I++L +EL
Sbjct: 332 GGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 364
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 27/153 (17%)
Query: 48 VNKLILAIPTYGRTWVINKDT-SRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASL 106
+KLIL +PTYGR++ + + +R G P G G GP +E G+L+Y E+CS +
Sbjct: 236 ASKLILGMPTYGRSFTLASSSDTRVGAP---ATGSGTPGPFTKEGGMLAYYEVCSWKGA- 291
Query: 107 TDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGL 166
T +R+ D + Y FR + Q WV ++D E+ K +Y KQ GL
Sbjct: 292 --------TKQRIQDQKV---PYIFR--DNQ-------WVGFDDVESFKTKVSYLKQKGL 331
Query: 167 AGVAMVDLSLDDFKG-NCGENDYH-IKSLDKEL 197
G + L LDDF G +C + Y I++L +EL
Sbjct: 332 GGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 364
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 27/153 (17%)
Query: 48 VNKLILAIPTYGRTWVINKDT-SRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASL 106
+KLIL +PTYGR++ + + +R G P G G GP +E G+L+Y E+CS +
Sbjct: 236 ASKLILGMPTYGRSFTLASSSDTRVGAP---ATGSGTPGPFTKEGGMLAYYEVCSWKGA- 291
Query: 107 TDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGL 166
T +R+ D + Y FR + Q WV ++D E+ K +Y KQ GL
Sbjct: 292 --------TKQRIQDQKV---PYIFR--DNQ-------WVGFDDVESFKTKVSYLKQKGL 331
Query: 167 AGVAMVDLSLDDFKG-NCGENDYH-IKSLDKEL 197
G + L LDDF G +C + Y I++L +EL
Sbjct: 332 GGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 364
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 27/153 (17%)
Query: 48 VNKLILAIPTYGRTWVINKDT-SRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASL 106
+KLIL +PTYGR++ + + +R G P G G GP +E G+L+Y E+CS +
Sbjct: 236 ASKLILGMPTYGRSFTLASSSDTRVGAP---ATGSGTPGPFTKEGGMLAYYEVCSWKGA- 291
Query: 107 TDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGL 166
T +R+ D + Y FR + Q WV ++D E+ K +Y KQ GL
Sbjct: 292 --------TKQRIQDQKV---PYIFR--DNQ-------WVGFDDVESFKTKVSYLKQKGL 331
Query: 167 AGVAMVDLSLDDFKG-NCGENDYH-IKSLDKEL 197
G + L LDDF G +C + Y I++L +EL
Sbjct: 332 GGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 364
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 24/140 (17%)
Query: 48 VNKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLT 107
+KL++ IPT+GR++ + + G P + GPG G +E G L+Y EIC L
Sbjct: 230 ASKLVMGIPTFGRSFTLASSETGVGAP---ISGPGIPGRFTKEAGTLAYYEICDFLRG-- 284
Query: 108 DANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLA 167
T+ R+ Q T + WV Y+D E+V K Y K LA
Sbjct: 285 ------ATVHRILGQQVPYATKGNQ------------WVGYDDQESVKSKVQYLKDRQLA 326
Query: 168 GVAMVDLSLDDFKGN-CGEN 186
G + L LDDF+G+ CG++
Sbjct: 327 GAMVWALDLDDFQGSFCGQD 346
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 24/140 (17%)
Query: 50 KLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTDA 109
K+++ IPTYG ++ + + G P GPG GP+ + G L+Y EIC L
Sbjct: 236 KVVMGIPTYGHSFTLASAETTVGAP---ASGPGAAGPITESSGFLAYYEICQFLKG---- 288
Query: 110 NASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAGV 169
+ R+ D Q + + Q WV Y+D +++ K + K L G
Sbjct: 289 ----AKITRLQDQQ-----VPYAVKGNQ-------WVGYDDVKSMETKVQFLKNLNLGGA 332
Query: 170 AMVDLSLDDFKG-NCGENDY 188
+ + +DDF G +C + Y
Sbjct: 333 MIWSIDMDDFTGKSCNQGPY 352
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 183 CGENDYHIKSLDKELDTDKNKGH-ELYKQVTALKTSYPDLNIILGVGGF 230
C Y S++ K+K LY+ + +LKT P L I+L +GG+
Sbjct: 31 CSHLIYSFASIENNKVIIKDKSEVMLYQTINSLKTKNPKLKILLSIGGY 79
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 25/151 (16%)
Query: 50 KLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLAS-LTD 108
KLI+ PTYG ++++ + S TGI G G GP +E G+ +Y EIC+ L + T
Sbjct: 238 KLIVGFPTYGHNFILS-NPSNTGIG-APTSGAGPAGPYAKESGIWAYYEICTFLKNGATQ 295
Query: 109 ANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAG 168
+P + VP YA++ +WV Y++ ++ +KA + K N G
Sbjct: 296 GWDAP---QEVP--------YAYQG---------NVWVGYDNVKSFDIKAQWLKHNKFGG 335
Query: 169 VAMVDLSLDDFKGN-CGENDYH-IKSLDKEL 197
+ + LDDF G C + + I +L K L
Sbjct: 336 AMVWAIDLDDFTGTFCNQGKFPLISTLKKAL 366
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 25/151 (16%)
Query: 50 KLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLAS-LTD 108
KLI+ PTYG ++++ + S TGI G G GP +E G+ +Y EIC+ L + T
Sbjct: 242 KLIVGFPTYGHNFILS-NPSNTGIG-APTSGAGPAGPYAKESGIWAYYEICTFLKNGATQ 299
Query: 109 ANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAG 168
+P + VP YA++ +WV Y++ ++ +KA + K N G
Sbjct: 300 GWDAP---QEVP--------YAYQG---------NVWVGYDNIKSFDIKAQWLKHNKFGG 339
Query: 169 VAMVDLSLDDFKGN-CGENDYH-IKSLDKEL 197
+ + LDDF G C + + I +L K L
Sbjct: 340 AMVWAIDLDDFTGTFCNQGKFPLISTLKKAL 370
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 24/145 (16%)
Query: 50 KLILAIPTYGRTWVINKDTSRTGI-PPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTD 108
KLI+ P YG T++++ D S+TGI P GP G E GLL+Y E+C+ L
Sbjct: 238 KLIVGFPAYGHTFILS-DPSKTGIGAPTISTGP--PGKYTDESGLLAYYEVCTFL----- 289
Query: 109 ANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAG 168
N T + P +P E WV Y++ + +KA + K N L G
Sbjct: 290 -NEGATEVWDAPQ----------EVPYAYQGNE---WVGYDNVRSFKLKAQWLKDNNLGG 335
Query: 169 VAMVDLSLDDFKGN-CGENDYHIKS 192
+ L +DDF G+ C + + + S
Sbjct: 336 AVVWPLDMDDFSGSFCHQRHFPLTS 360
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 37/134 (27%)
Query: 48 VNKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEK----GPLVQEEGLLSYGEICSQL 103
NK++L +P YGR++ +GPG+ G E G+ Y
Sbjct: 251 ANKIVLGMPLYGRSFA-------------NTDGPGKPYNGVGQGSWENGVWDY------- 290
Query: 104 ASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQ 163
+L A A+ L PD M +Y++ NK L +SY++P+ +K+ Y K
Sbjct: 291 KALPQAGATEHVL---PDI---MASYSYDATNKFL-------ISYDNPQVANLKSGYIKS 337
Query: 164 NGLAGVAMVDLSLD 177
GL G D S D
Sbjct: 338 LGLGGAMWWDSSSD 351
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 37/134 (27%)
Query: 48 VNKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEK----GPLVQEEGLLSYGEICSQL 103
NK++L +P YGR++ +GPG+ G E G+ Y
Sbjct: 289 ANKIVLGMPLYGRSFA-------------NTDGPGKPYNGVGQGSWENGVWDY------- 328
Query: 104 ASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQ 163
+L A A+ L PD M +Y++ NK L +SY++P+ +K+ Y K
Sbjct: 329 KALPQAGATEHVL---PDI---MASYSYDATNKFL-------ISYDNPQVANLKSGYIKS 375
Query: 164 NGLAGVAMVDLSLD 177
GL G D S D
Sbjct: 376 LGLGGAMWWDSSSD 389
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 25/132 (18%)
Query: 50 KLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTDA 109
K +L P YG W + S + P G + +G + YG+I +
Sbjct: 228 KAVLGFPYYGYAWRLTNANSHSYYAP-------TTGAAISPDGSIGYGQIRKFIVD---- 276
Query: 110 NASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAGV 169
N + T +G Y + N W+ Y+D +++ K YAKQ GL G
Sbjct: 277 NGATTVYN-----STVVGDYCYAGTN---------WIGYDDNQSIVTKVRYAKQRGLLGY 322
Query: 170 AMVDLSLDDFKG 181
+ DD G
Sbjct: 323 FSWHVGADDNSG 334
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 17/140 (12%)
Query: 50 KLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTDA 109
K+++ +P YGR + G PGE P + L E C + D
Sbjct: 284 KIVMGVPFYGR--AFKGVSGGNGGQYSSHSTPGED-PYPSTDYWLVGCEEC-----VRDK 335
Query: 110 NASPTTLRRVPDTQKRMGTYAF-RLPNKQLKQEY------GIWVSYEDPETVGVKAAYAK 162
+ + R++ Q G Y + RL N + K Y G++V+Y+D E+ KA Y K
Sbjct: 336 DPRIASYRQL--EQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIK 393
Query: 163 QNGLAGVAMVDLSLDDFKGN 182
Q L GV L D+ G+
Sbjct: 394 QQQLGGVMFWHLGQDNRNGD 413
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 199 TDKNKGHELYKQVTALKTSYPDLNIILGVGGFEDQKD 235
T+ K ++ ++TALK P L I+ +GG+ D
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSND 102
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 17/140 (12%)
Query: 50 KLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTDA 109
K+++ +P YGR + G PGE P + L E C + D
Sbjct: 284 KIVMGVPFYGR--AFKGVSGGNGGQYSSHSTPGED-PYPSTDYWLVGCEEC-----VRDK 335
Query: 110 NASPTTLRRVPDTQKRMGTYAF-RLPNKQLKQEY------GIWVSYEDPETVGVKAAYAK 162
+ + R++ Q G Y + RL N + K Y G++V+Y+D E+ KA Y K
Sbjct: 336 DPRIASYRQL--EQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIK 393
Query: 163 QNGLAGVAMVDLSLDDFKGN 182
Q L GV L D+ G+
Sbjct: 394 QQQLGGVMFWHLGQDNRNGD 413
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 199 TDKNKGHELYKQVTALKTSYPDLNIILGVGGFEDQKD 235
T+ K ++ ++TALK P L I+ +GG+ D
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSND 102
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 17/140 (12%)
Query: 50 KLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTDA 109
K+++ +P YGR + G PGE P + L E C + D
Sbjct: 283 KIVMGVPFYGR--AFKGVSGGNGGQYSSHSTPGED-PYPSTDYWLVGCEEC-----VRDK 334
Query: 110 NASPTTLRRVPDTQKRMGTYAF-RLPNKQLKQEY------GIWVSYEDPETVGVKAAYAK 162
+ + R++ Q G Y + RL N + K Y G++V+Y+D E+ KA Y K
Sbjct: 335 DPRIASYRQL--EQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIK 392
Query: 163 QNGLAGVAMVDLSLDDFKGN 182
Q L GV L D+ G+
Sbjct: 393 QQQLGGVMFWHLGQDNRNGD 412
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 199 TDKNKGHELYKQVTALKTSYPDLNIILGVGGFEDQKD 235
T+ K ++ ++TALK P L I+ +GG+ D
Sbjct: 65 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSND 101
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 17/140 (12%)
Query: 50 KLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTDA 109
K+++ +P YGR + G PGE P + L E C + D
Sbjct: 284 KIVMGVPFYGR--AFKGVSGGNGGQYSSHSTPGED-PYPSTDYWLVGCEEC-----VRDK 335
Query: 110 NASPTTLRRVPDTQKRMGTYAF-RLPNKQLKQEY------GIWVSYEDPETVGVKAAYAK 162
+ + R++ Q G Y + RL N + K Y G++V+Y+D E+ KA Y K
Sbjct: 336 DPRIASYRQL--EQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIK 393
Query: 163 QNGLAGVAMVDLSLDDFKGN 182
Q L GV L D+ G+
Sbjct: 394 QQQLGGVMFWHLGQDNRNGD 413
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 199 TDKNKGHELYKQVTALKTSYPDLNIILGVGGFEDQKD 235
T+ K ++ ++TALK P L I+ +GG+ D
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSND 102
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 17/140 (12%)
Query: 50 KLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTDA 109
K+++ +P YGR + G PGE P + L E C + D
Sbjct: 284 KIVMGVPFYGR--AFKGVSGGNGGQYSSHSTPGED-PYPSTDYWLVGCEEC-----VRDK 335
Query: 110 NASPTTLRRVPDTQKRMGTYAF-RLPNKQLKQEY------GIWVSYEDPETVGVKAAYAK 162
+ + R++ Q G Y + RL N + K Y G++V+Y+D E+ KA Y K
Sbjct: 336 DPRIASYRQL--EQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIK 393
Query: 163 QNGLAGVAMVDLSLDDFKGN 182
Q L GV L D+ G+
Sbjct: 394 QQQLGGVMFWHLGQDNRNGD 413
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 199 TDKNKGHELYKQVTALKTSYPDLNIILGVGGFEDQKD 235
T+ K ++ ++TALK P L I+ +GG+ D
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSND 102
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 17/140 (12%)
Query: 50 KLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTDA 109
K+++ +P YGR + G PGE P + L E C + D
Sbjct: 284 KIVMGVPFYGR--AFKGVSGGNGGQYSSHSTPGED-PYPSTDYWLVGCEEC-----VRDK 335
Query: 110 NASPTTLRRVPDTQKRMGTYAF-RLPNKQLKQEY------GIWVSYEDPETVGVKAAYAK 162
+ + R++ Q G Y + RL N + K Y G++V+Y+D E+ KA Y K
Sbjct: 336 DPRIASYRQL--EQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIK 393
Query: 163 QNGLAGVAMVDLSLDDFKGN 182
Q L GV L D+ G+
Sbjct: 394 QQQLGGVMFWHLGQDNRNGD 413
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 199 TDKNKGHELYKQVTALKTSYPDLNIILGVGGFEDQKD 235
T+ K ++ ++TALK P L I+ +GG+ D
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSND 102
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 17/140 (12%)
Query: 50 KLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTDA 109
K+++ +P YGR + G PGE P + L E C + D
Sbjct: 284 KIVMGVPFYGR--AFKGVSGGNGGQYSSHSTPGED-PYPSTDYWLVGCEEC-----VRDK 335
Query: 110 NASPTTLRRVPDTQKRMGTYAF-RLPNKQLKQEY------GIWVSYEDPETVGVKAAYAK 162
+ + R++ Q G Y + RL N + K Y G++V+Y+D E+ KA Y K
Sbjct: 336 DPRIASYRQL--EQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIK 393
Query: 163 QNGLAGVAMVDLSLDDFKGN 182
Q L GV L D+ G+
Sbjct: 394 QQQLGGVMFWHLGQDNRNGD 413
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 199 TDKNKGHELYKQVTALKTSYPDLNIILGVGGFEDQKD 235
T+ K ++ ++TALK P L I+ +GG+ D
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSND 102
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 19/128 (14%)
Query: 50 KLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTDA 109
KL+L +P YGR W ++ G + G E G + ++ + +
Sbjct: 298 KLVLGVPFYGRGW---DGCAQAGNGQYQT-CTGGSSVGTWEAGSFDFYDLEANYINKNGY 353
Query: 110 NASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAGV 169
+VP Y + NK+ +SY+D E+VG K AY K GL G
Sbjct: 354 TRYWNDTAKVP--------YLYNASNKRF-------ISYDDAESVGYKTAYIKSKGLGGA 398
Query: 170 AMVDLSLD 177
+LS D
Sbjct: 399 MFWELSGD 406
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 24/120 (20%)
Query: 50 KLILAIPTYGRTW-VINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTD 108
KL+L IP YG W ++N + I L+ G+ ++G ++Y I +
Sbjct: 227 KLVLGIPFYGYAWRLVNAN-----IHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVESRA 281
Query: 109 ANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAG 168
T+ +G Y + N W+SY+D +TV K Y K GL G
Sbjct: 282 TTVYNATI---------VGDYCYSGSN---------WISYDDTQTVRNKVNYVKGRGLLG 323
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 24/120 (20%)
Query: 50 KLILAIPTYGRTW-VINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTD 108
KL+L IP YG W ++N + I L+ G+ ++G ++Y I +
Sbjct: 227 KLVLGIPFYGYAWRLVNAN-----IHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVESRA 281
Query: 109 ANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAG 168
T+ +G Y + N W+SY+D +TV K Y K GL G
Sbjct: 282 TTVYNATI---------VGDYCYSGSN---------WISYDDTQTVRNKVNYVKGRGLLG 323
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 19/138 (13%)
Query: 48 VNKLILAIPTYGRTW-------VINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEIC 100
NKL+L YGR W + + + TG K++G +G V E+G++ Y I
Sbjct: 430 ANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQG--VWEDGVIDYKGIK 487
Query: 101 SQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAY 160
S + L N D Q + + +L ++++D +V K Y
Sbjct: 488 SFM--LGANNTGINGFEYGYDAQAE-APWVWNRSTGEL-------ITFDDHRSVLAKGNY 537
Query: 161 AKQNGLAGVAMVDLSLDD 178
AK GLAG+ ++ D+
Sbjct: 538 AKSLGLAGLFSWEIDADN 555
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 20/86 (23%)
Query: 175 SLDDFKGNC-GENDYHIKSLDKELDTDKN---KGHEL-------YKQVTALKTSYPDLNI 223
S + + C G NDY + D K+ GHE Y + ALK PDL I
Sbjct: 188 SFNALQTACRGVNDYEVVIHDPWAAYQKSFPQAGHEYSTPIKGNYAMLMALKQRNPDLKI 247
Query: 224 ILGVGG---------FEDQKDKEKYL 240
I +GG F D+K+++ ++
Sbjct: 248 IPSIGGGTLSDPFYDFVDKKNRDTFV 273
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 19/138 (13%)
Query: 48 VNKLILAIPTYGRTW-------VINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEIC 100
NKL+L YGR W + + + TG K++G +G V E+G++ Y I
Sbjct: 430 ANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQG--VWEDGVIDYKGIK 487
Query: 101 SQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAY 160
S + L N D Q + + +L ++++D +V K Y
Sbjct: 488 SFM--LGANNTGINGFEYGYDAQAE-APWVWNRSTGEL-------ITFDDHRSVLAKGNY 537
Query: 161 AKQNGLAGVAMVDLSLDD 178
AK GLAG+ ++ D+
Sbjct: 538 AKSLGLAGLFSWEIDADN 555
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 20/86 (23%)
Query: 175 SLDDFKGNC-GENDYHIKSLDKELDTDKN---KGHEL-------YKQVTALKTSYPDLNI 223
S + + C G NDY + D K+ GHE Y + ALK PDL I
Sbjct: 188 SFNALQTACRGVNDYEVVIHDPWAAYQKSFPQAGHEYSTPIKGNYAMLMALKQRNPDLKI 247
Query: 224 ILGVGG---------FEDQKDKEKYL 240
I +GG F D+K+++ ++
Sbjct: 248 IPSIGGWTLSDPFYDFVDKKNRDTFV 273
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 19/138 (13%)
Query: 48 VNKLILAIPTYGRTW-------VINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEIC 100
NKL+L YGR W + + + TG K++G +G V E+G++ Y I
Sbjct: 430 ANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQG--VWEDGVIDYKGIK 487
Query: 101 SQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAY 160
S + L N D Q + + +L ++++D +V K Y
Sbjct: 488 SFM--LGANNTGINGFEYGYDAQAE-APWVWNRSTGEL-------ITFDDHRSVLAKGNY 537
Query: 161 AKQNGLAGVAMVDLSLDD 178
AK GLAG+ ++ D+
Sbjct: 538 AKSLGLAGLFSWEIDADN 555
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 20/86 (23%)
Query: 175 SLDDFKGNC-GENDYHIKSLDKELDTDKN---KGHEL-------YKQVTALKTSYPDLNI 223
S + + C G NDY + D K+ GHE Y + ALK PDL I
Sbjct: 188 SFNALQTACRGVNDYEVVIHDPWAAYQKSFPQAGHEYSTPIKGNYAMLMALKQRNPDLKI 247
Query: 224 ILGVGG---------FEDQKDKEKYL 240
I +GG F D+K+++ ++
Sbjct: 248 IPSIGGWTLSDPFYDFVDKKNRDTFV 273
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 146 VSYEDPETVGVKAAYAKQNGLAGVAMVDLSLDD 178
+SYE+P +V +KA Y K GLAG + DD
Sbjct: 372 LSYENPRSVAIKADYIKAKGLAGAXFWEYGADD 404
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 29/130 (22%)
Query: 48 VNKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLT 107
+K+IL +P YGR +V +GPG+ + E S + +
Sbjct: 266 ASKIILGMPIYGRAFV-------------GTDGPGKPYSTIGE---------GSWESGIW 303
Query: 108 DANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLA 167
D P V TY++ ++ + +SY+ P+ V K +YAK GL
Sbjct: 304 DYKVLPKAGATVITDSAAGATYSYDSSSRTM-------ISYDTPDMVRTKVSYAKGLGLG 356
Query: 168 GVAMVDLSLD 177
G + S D
Sbjct: 357 GSMFWEASAD 366
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 136 KQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGE 185
K L++ G+ + + +T G+ AA AGV VD ++D GN +
Sbjct: 745 KALREATGLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAMDALSGNTSQ 794
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 136 KQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGE 185
K L++ G+ + + +T G+ AA AGV VD ++D GN +
Sbjct: 745 KALREATGLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAMDALSGNTSQ 794
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 33/132 (25%)
Query: 48 VNKLILAIPTYGRTWVINKD--TSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLAS 105
NK++L +P YGR + TS G+ G E G+ Y ++ Q A
Sbjct: 248 ANKIVLGMPLYGRAFASTDGIGTSFNGV-----------GGGSWENGVWDYKDMPQQGAQ 296
Query: 106 LTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNG 165
+T+ + +Y++ + L +SY+ + G KA Y +NG
Sbjct: 297 VTE-------------LEDIAASYSYDKNKRYL-------ISYDTVKIAGKKAEYITKNG 336
Query: 166 LAGVAMVDLSLD 177
+ G + S D
Sbjct: 337 MGGGMWWESSSD 348
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 33/132 (25%)
Query: 48 VNKLILAIPTYGRTWVINKD--TSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLAS 105
NK++L +P YGR + TS G+ G E G+ Y ++ Q A
Sbjct: 248 ANKIVLGMPLYGRAFASTDGIGTSFNGV-----------GGGSWENGVWDYKDMPQQGAQ 296
Query: 106 LTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNG 165
+T+ + +Y++ + L +SY+ + G KA Y +NG
Sbjct: 297 VTE-------------LEDIAASYSYDKNKRYL-------ISYDTVKIAGKKAEYITKNG 336
Query: 166 LAGVAMVDLSLD 177
+ G + S D
Sbjct: 337 MGGGMWWESSSD 348
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 33/132 (25%)
Query: 48 VNKLILAIPTYGRTWVINKD--TSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLAS 105
NK++L +P YGR + TS G+ G E G+ Y ++ Q A
Sbjct: 248 ANKIVLGMPLYGRAFASTDGIGTSFNGV-----------GGGSWENGVWDYKDMPQQGAQ 296
Query: 106 LTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNG 165
+T+ + +Y++ + L +SY+ + G KA Y +NG
Sbjct: 297 VTE-------------LEDIAASYSYDKNKRYL-------ISYDTVKIAGKKAEYITKNG 336
Query: 166 LAGVAMVDLSLD 177
+ G + S D
Sbjct: 337 MGGGMWWESSSD 348
>pdb|2YYT|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYT|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYT|C Chain C, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYT|D Chain D, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYU|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYU|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
Length = 246
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 135 NKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGEN 186
+ L +E +W+S ETV AA AK++GL GV K CG +
Sbjct: 128 ERMLHEE--LWISRPLVETVAHYAALAKESGLDGVVCSANEAAFIKERCGAS 177
>pdb|3GNN|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Burkholderi Pseudomallei
pdb|3GNN|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Burkholderi Pseudomallei
Length = 298
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 77 KVEGPGEKGPLVQEEGLLSYGEICSQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNK 136
++ GP + L E L++ ++ S +AS A+ + R+ DT+ R+ LP
Sbjct: 106 ELRGPA-RALLTAERNALNFLQLLSGVAS-----ATRQYVDRIADTRARILDTRKTLPGL 159
Query: 137 QLKQEYGIWVSYEDPETVGVKAA-YAKQNGLAGVAMVDLSLD 177
+L Q+Y + V + + + A K+N +A V +LD
Sbjct: 160 RLAQKYAVRVGGGANQRLALYAGILIKENHIAAAGGVGEALD 201
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 208 YKQVTALKTSYPDLNIILGVGGF 230
+ Q+ ALK ++PDL I+ +GG+
Sbjct: 253 FGQLMALKQAHPDLKILPSIGGW 275
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 208 YKQVTALKTSYPDLNIILGVGGF 230
+ Q+ ALK ++PDL I+ +GG+
Sbjct: 230 FGQLMALKQAHPDLKILPSIGGW 252
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 208 YKQVTALKTSYPDLNIILGVGGF 230
+ Q+ ALK ++PDL I+ +GG+
Sbjct: 230 FGQLMALKQAHPDLKILPSIGGW 252
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 208 YKQVTALKTSYPDLNIILGVGGF 230
+ Q+ ALK ++PDL I+ +GG+
Sbjct: 230 FGQLMALKQAHPDLKILPSIGGW 252
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 208 YKQVTALKTSYPDLNIILGVGGF 230
+ Q+ ALK ++PDL I+ +GG+
Sbjct: 230 FGQLMALKQAHPDLKILPSIGGW 252
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 208 YKQVTALKTSYPDLNIILGVGGF 230
+ Q+ ALK ++PDL I+ +GG+
Sbjct: 230 FGQLMALKQAHPDLKILPSIGGW 252
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 208 YKQVTALKTSYPDLNIILGVGGF 230
+ Q+ ALK ++PDL I+ +GG+
Sbjct: 230 FGQLMALKQAHPDLKILPSIGGW 252
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 208 YKQVTALKTSYPDLNIILGVGGF 230
+ Q+ ALK ++PDL I+ +GG+
Sbjct: 230 FGQLMALKQAHPDLKILPSIGGW 252
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 208 YKQVTALKTSYPDLNIILGVGGF 230
+ Q+ ALK ++PDL I+ +GG+
Sbjct: 230 FGQLMALKQAHPDLKILPSIGGW 252
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 208 YKQVTALKTSYPDLNIILGVGGF 230
+ Q+ ALK ++PDL I+ +GG+
Sbjct: 230 FGQLMALKQAHPDLKILPSIGGW 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,237,642
Number of Sequences: 62578
Number of extensions: 313127
Number of successful extensions: 619
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 489
Number of HSP's gapped (non-prelim): 101
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)