Query psy13760
Match_columns 242
No_of_seqs 170 out of 1187
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 19:48:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02873 GH18_IDGF The IDGF's ( 100.0 5.9E-39 1.3E-43 298.1 15.4 190 6-198 207-413 (413)
2 cd02872 GH18_chitolectin_chito 100.0 2.9E-36 6.3E-41 275.3 14.4 171 6-198 175-362 (362)
3 KOG2806|consensus 100.0 4.2E-32 9.2E-37 253.3 13.9 174 6-200 229-422 (432)
4 cd02878 GH18_zymocin_alpha Zym 100.0 5.6E-30 1.2E-34 233.0 12.0 152 6-177 172-345 (345)
5 smart00636 Glyco_18 Glycosyl h 100.0 1.6E-29 3.4E-34 228.3 13.0 151 5-177 170-334 (334)
6 cd02875 GH18_chitobiase Chitob 100.0 2.6E-29 5.6E-34 229.7 14.1 161 6-184 174-346 (358)
7 COG3325 ChiA Chitinase [Carboh 100.0 8.6E-29 1.9E-33 224.7 9.3 173 4-201 236-439 (441)
8 cd02879 GH18_plant_chitinase_c 99.9 2.1E-26 4.5E-31 205.9 8.6 110 5-180 175-296 (299)
9 cd02874 GH18_CFLE_spore_hydrol 99.9 3.4E-25 7.5E-30 198.7 10.6 139 5-179 163-307 (313)
10 PF00704 Glyco_hydro_18: Glyco 99.9 6.7E-25 1.5E-29 197.6 12.0 150 6-177 179-343 (343)
11 cd06548 GH18_chitinase The GH1 99.9 3.2E-25 6.9E-30 200.0 9.1 112 5-177 195-322 (322)
12 cd02876 GH18_SI-CLP Stabilin-1 99.9 6E-24 1.3E-28 191.3 9.5 131 6-178 174-311 (318)
13 cd06549 GH18_trifunctional GH1 99.8 4.5E-21 9.8E-26 171.3 10.3 136 5-179 155-295 (298)
14 COG3858 Predicted glycosyl hyd 99.7 1.8E-18 3.8E-23 157.2 6.5 139 4-180 269-413 (423)
15 cd06545 GH18_3CO4_chitinase Th 99.6 7.4E-16 1.6E-20 134.6 5.9 97 6-194 150-253 (253)
16 KOG2091|consensus 98.2 7.3E-06 1.6E-10 72.9 8.7 132 6-177 248-384 (392)
17 cd00598 GH18_chitinase-like Th 96.9 0.00082 1.8E-08 56.2 3.6 25 153-177 186-210 (210)
18 cd06544 GH18_narbonin Narbonin 95.6 0.005 1.1E-07 54.0 1.1 54 7-63 168-222 (253)
19 cd06544 GH18_narbonin Narbonin 91.7 0.11 2.4E-06 45.6 2.1 28 206-233 56-83 (253)
20 cd02873 GH18_IDGF The IDGF's ( 87.5 0.34 7.4E-06 45.4 2.0 30 205-234 59-88 (413)
21 cd06548 GH18_chitinase The GH1 83.2 0.65 1.4E-05 41.9 1.6 29 205-233 69-97 (322)
22 COG3325 ChiA Chitinase [Carboh 79.4 1.7 3.7E-05 40.9 2.9 31 205-235 111-141 (441)
23 cd06542 GH18_EndoS-like Endo-b 78.5 0.99 2.1E-05 39.1 1.1 46 5-59 162-207 (255)
24 cd02871 GH18_chitinase_D-like 78.2 1.2 2.5E-05 40.1 1.5 51 6-58 180-248 (312)
25 cd02872 GH18_chitolectin_chito 78.1 1.3 2.8E-05 40.4 1.8 29 205-233 55-83 (362)
26 cd06546 GH18_CTS3_chitinase GH 75.8 1.1 2.3E-05 39.4 0.5 41 9-57 176-217 (256)
27 cd02871 GH18_chitinase_D-like 75.1 3.3 7.1E-05 37.3 3.5 32 148-179 256-300 (312)
28 cd02877 GH18_hevamine_XipI_cla 71.9 4.2 9.2E-05 36.2 3.4 32 148-179 237-270 (280)
29 cd06543 GH18_PF-ChiA-like PF-C 69.3 4.7 0.0001 36.2 3.1 34 143-179 234-267 (294)
30 KOG2806|consensus 65.0 3.7 8E-05 38.8 1.7 27 205-231 106-132 (432)
31 smart00636 Glyco_18 Glycosyl h 62.9 4.3 9.4E-05 36.4 1.6 26 207-232 53-78 (334)
32 cd06542 GH18_EndoS-like Endo-b 60.6 5.7 0.00012 34.3 1.9 40 150-197 213-253 (255)
33 cd02879 GH18_plant_chitinase_c 54.1 7.7 0.00017 34.6 1.7 21 213-233 59-79 (299)
34 PF08869 XisI: XisI protein; 51.6 6.2 0.00013 30.3 0.6 14 42-55 84-97 (111)
35 cd06546 GH18_CTS3_chitinase GH 49.0 21 0.00046 31.1 3.6 26 148-173 225-252 (256)
36 cd00598 GH18_chitinase-like Th 42.4 19 0.00041 29.6 2.2 27 208-234 52-78 (210)
37 smart00733 Mterf Mitochondrial 37.5 32 0.00069 18.4 2.0 22 144-166 9-30 (31)
38 PF00704 Glyco_hydro_18: Glyco 30.5 20 0.00044 31.8 0.5 30 205-234 58-87 (343)
39 COG3469 Chitinase [Carbohydrat 25.4 33 0.00071 30.4 0.9 30 150-179 278-309 (332)
40 cd02878 GH18_zymocin_alpha Zym 25.3 44 0.00095 30.4 1.8 26 206-235 51-76 (345)
41 cd02877 GH18_hevamine_XipI_cla 24.4 33 0.00071 30.5 0.7 49 9-58 178-229 (280)
42 PTZ00413 lipoate synthase; Pro 24.3 1.3E+02 0.0027 28.4 4.5 66 148-233 176-241 (398)
43 PF14307 Glyco_tran_WbsX: Glyc 22.2 1.1E+02 0.0023 27.9 3.7 34 144-177 50-83 (345)
No 1
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=5.9e-39 Score=298.12 Aligned_cols=190 Identities=41% Similarity=0.705 Sum_probs=154.6
Q ss_pred hhhhhhhhhhhhhhhhccCCCCC-CCCCCccccc---------------hhhhccCCCCcceEEeeecceeeEEecCCCC
Q psy13760 6 VIASVLVVMVVSARQILASEDSL-ATRPPKVICH---------------YTDIAFVGKVNKLILAIPTYGRTWVINKDTS 69 (242)
Q Consensus 6 ~~~~~l~~~~~~~~d~~g~~~s~-~~g~~a~l~~---------------y~~~~~Gvp~~KLvLGiP~YGr~~~~~~~~~ 69 (242)
.|+.++|++.+|+||++|+|+.. .+++++||+. ++ +++|+|++|||||||||||.|+++++..
T Consensus 207 ~l~~~vD~inlMtYD~~g~~~~~~~~~~~apL~~~~~~~~~~~v~~~v~~~-~~~gvp~~KlvlGip~YGr~w~l~~~~~ 285 (413)
T cd02873 207 AIANNVDFVNLATFDFLTPERNPEEADYTAPIYELYERNPHHNVDYQVKYW-LNQGTPASKLNLGIATYGRAWKLTKDSG 285 (413)
T ss_pred HHhhcCCEEEEEEecccCCCCCCCccCcCCccCCCccccccccHHHHHHHH-HHcCCCHHHeEEEEecceeeeEccCCCC
Confidence 58999999999999999998864 6889998752 12 7889999999999999999999987543
Q ss_pred CCCCCC-CCcCCCCCCCCCCCCCccccHHHHHHHhhcCCCCCCCCCceeEeecCCCCceeEEEeCCCccccCcccEEEEe
Q psy13760 70 RTGIPP-LKVEGPGEKGPLVQEEGLLSYGEICSQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSY 148 (242)
Q Consensus 70 ~~g~~~-~~~~gp~~~g~~~~~~G~~~y~eI~~~l~~~~~~~g~~~~~~~~~D~~~~~~py~~~~~~~~~~~~~~~wisy 148 (242)
..+.+. +++.||+.+|+++.++|.++|.|||..+.......|+...|++.||++.+.+||+|+..+.+ +++++||+|
T Consensus 286 ~~g~~~~~~~~g~~~~G~~~~~~g~l~y~ei~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~--~~~~~wvsy 363 (413)
T cd02873 286 ITGVPPVLETDGPGPAGPQTKTPGLLSWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADEN--GEHGIWVSY 363 (413)
T ss_pred CcCCCCCccCCCCCCCCCCcCCCccccHHHHHHhhccCccccccccceeEeecccccccceEEeccccC--CCCCeEEEe
Confidence 334432 25688889999999999999999999876532111222346788998765459998743321 345789999
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEeeCCCCCCCCCCCCCcccccccccccc
Q psy13760 149 EDPETVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGENDYHIKSLDKELD 198 (242)
Q Consensus 149 Dd~~Si~~K~~y~~~~gLgGv~vW~l~~Dd~~g~C~~~~~pLl~ai~~~l 198 (242)
||++||+.|++||+++||||+|+|++++|||+|.|+++.+|||++|+..|
T Consensus 364 dd~~Si~~K~~y~~~~gLgGv~~W~l~~DD~~g~c~~~~~pll~~i~~~~ 413 (413)
T cd02873 364 EDPDTAANKAGYAKAKGLGGVALFDLSLDDFRGQCTGDKFPILRSAKYRL 413 (413)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEeeecCcCCCCcCCCCChHHHHHHhhC
Confidence 99999999999999999999999999999999999878999999998754
No 2
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=2.9e-36 Score=275.31 Aligned_cols=171 Identities=31% Similarity=0.547 Sum_probs=146.4
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCCCCccccch-----------hh------hccCCCCcceEEeeecceeeEEecCCC
Q psy13760 6 VIASVLVVMVVSARQILASEDSLATRPPKVICHY-----------TD------IAFVGKVNKLILAIPTYGRTWVINKDT 68 (242)
Q Consensus 6 ~~~~~l~~~~~~~~d~~g~~~s~~~g~~a~l~~y-----------~~------~~~Gvp~~KLvLGiP~YGr~~~~~~~~ 68 (242)
.|+.++|.+.+|+||++++| +..+||++|++.. ++ +++|+|++||+||||||||.|++.+..
T Consensus 175 ~l~~~vD~v~vmtYD~~~~~-~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGlp~YG~~~~~~~~~ 253 (362)
T cd02872 175 EISKYLDFINVMTYDFHGSW-EGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGAPPEKLVLGIPTYGRSFTLASPS 253 (362)
T ss_pred HHhhhcceEEEecccCCCCC-CCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCHHHeEeccccccceeeecCCc
Confidence 58899999999999999986 5568899987531 11 568999999999999999999998754
Q ss_pred CCCCCCCCCcCCCCCCCCCCCCCccccHHHHHHHhhcCCCCCCCCCceeEeecCCCCceeEEEeCCCccccCcccEEEEe
Q psy13760 69 SRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSY 148 (242)
Q Consensus 69 ~~~g~~~~~~~gp~~~g~~~~~~G~~~y~eI~~~l~~~~~~~g~~~~~~~~~D~~~~~~py~~~~~~~~~~~~~~~wisy 148 (242)
+ .+..+ ++.|++.+|+++..+|.++|.|||+.+ .. +|+..||+.++ +||+++. ++||+|
T Consensus 254 ~-~~~g~-~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~--------~~~~~~D~~~~-~~y~~~~---------~~~v~y 312 (362)
T cd02872 254 N-TGVGA-PASGPGTAGPYTREAGFLAYYEICEFL-KS--------GWTVVWDDEQK-VPYAYKG---------NQWVGY 312 (362)
T ss_pred c-CCCCC-ccCCCCCCCCCcCCCccchHHHHHHhh-cC--------CcEEEEeCCcc-eeEEEEC---------CEEEEe
Confidence 2 22222 567888888899999999999999987 32 36899999997 8999873 689999
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEeeCCCCCCCCCCCCCcccccccccccc
Q psy13760 149 EDPETVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGENDYHIKSLDKELD 198 (242)
Q Consensus 149 Dd~~Si~~K~~y~~~~gLgGv~vW~l~~Dd~~g~C~~~~~pLl~ai~~~l 198 (242)
||++||+.|++||+++||||+++|++++||+.|.||.+.||||++|++.+
T Consensus 313 dd~~Si~~K~~~~~~~~lgGv~iW~l~~DD~~g~cg~~~~pLl~~i~~~~ 362 (362)
T cd02872 313 DDEESIALKVQYLKSKGLGGAMVWSIDLDDFRGTCGQGKYPLLNAINRAL 362 (362)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEeeecCcCCCccCCCCCcHHHHHHHhC
Confidence 99999999999999999999999999999999999988999999998764
No 3
>KOG2806|consensus
Probab=99.98 E-value=4.2e-32 Score=253.35 Aligned_cols=174 Identities=24% Similarity=0.376 Sum_probs=145.3
Q ss_pred hhhhhhhhhhhhhhhhccCCCCC-CCCCCccccc----------------hhhhccCCCCcceEEeeecceeeEEecCCC
Q psy13760 6 VIASVLVVMVVSARQILASEDSL-ATRPPKVICH----------------YTDIAFVGKVNKLILAIPTYGRTWVINKDT 68 (242)
Q Consensus 6 ~~~~~l~~~~~~~~d~~g~~~s~-~~g~~a~l~~----------------y~~~~~Gvp~~KLvLGiP~YGr~~~~~~~~ 68 (242)
.|+..+|++.+|+|||||+|+.. .|||+||++. |+ ++.|.||+||+||||||||.|+++...
T Consensus 229 ~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ky~-~~~~~~~~Kl~~gip~yg~~w~~~~~~ 307 (432)
T KOG2806|consen 229 NLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLKYW-TEKGLPPSKLVLALPFYGRSWQLLEDS 307 (432)
T ss_pred HHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHHHH-hhcCCCchheEEEEecceehhhhcCCc
Confidence 58889999999999999998874 8999999863 12 777999999999999999999999865
Q ss_pred CCCCCCCCCcCCCCCCCC-CCCCCccccHHHHHHHhhcCCCCCCCCCceeEeecCCCCceeEEEeCCCccccCcccEEEE
Q psy13760 69 SRTGIPPLKVEGPGEKGP-LVQEEGLLSYGEICSQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVS 147 (242)
Q Consensus 69 ~~~g~~~~~~~gp~~~g~-~~~~~G~~~y~eI~~~l~~~~~~~g~~~~~~~~~D~~~~~~py~~~~~~~~~~~~~~~wis 147 (242)
.. +..+..+++.+++ .+..+|+++|.|||+...+.+ ...||+.++ +||+|+. + .++||+
T Consensus 308 ~~---~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~---------~~~~d~~~~-~~Y~~~~-~------~~~wvt 367 (432)
T KOG2806|consen 308 RS---SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG---------VTHWDEETQ-TPYLYNI-P------YDQWVT 367 (432)
T ss_pred CC---CCCccCCCcccCccccccCceeeHHHHHHHhcccC---------CceecCCce-eeeEEec-C------CCeEEe
Confidence 43 2224566666665 666889999999999655421 578999998 7999984 2 279999
Q ss_pred eCCHHHHHHHHHHHHHcCCCeEEEeeCCCCCCCCCC-C-CCcccccccccccccC
Q psy13760 148 YEDPETVGVKAAYAKQNGLAGVAMVDLSLDDFKGNC-G-ENDYHIKSLDKELDTD 200 (242)
Q Consensus 148 yDd~~Si~~K~~y~~~~gLgGv~vW~l~~Dd~~g~C-~-~~~~pLl~ai~~~l~~ 200 (242)
|||++||++|++||++++|||||+|+|++||+++.| + ...+|++.++...+..
T Consensus 368 yen~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~~~~~~~~~~~~~~~~~~~~~~~ 422 (432)
T KOG2806|consen 368 YENERSIHIKADYAKDEGLGGVAIWNIDQDDESGSLLNAALSRPQTCSICLKNHD 422 (432)
T ss_pred cCCHHHHHHHHHHHHhcCCceEEEEeccCCCCCCccccccccccceeeccccccc
Confidence 999999999999999999999999999999999984 4 2688899988877654
No 4
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=99.96 E-value=5.6e-30 Score=233.02 Aligned_cols=152 Identities=20% Similarity=0.227 Sum_probs=118.0
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCCCCcc-------c------------cchhhhccCCCCcceEEeeecceeeEEecC
Q psy13760 6 VIASVLVVMVVSARQILASEDSLATRPPKV-------I------------CHYTDIAFVGKVNKLILAIPTYGRTWVINK 66 (242)
Q Consensus 6 ~~~~~l~~~~~~~~d~~g~~~s~~~g~~a~-------l------------~~y~~~~~Gvp~~KLvLGiP~YGr~~~~~~ 66 (242)
.|+.++|++.+|+||++|+|... +++++| + .+++ +++|+|++||+||||||||.|++++
T Consensus 172 ~l~~~vD~i~vMtYD~~g~w~~~-~~~~~p~~p~~~~~~~~~~~~~~~~~v~~~-~~~Gvp~~KlvlGip~YGr~~~l~~ 249 (345)
T cd02878 172 DMAKYVDYIVYMTYDLHGQWDYG-NKWASPGCPAGNCLRSHVNKTETLDALSMI-TKAGVPSNKVVVGVASYGRSFKMAD 249 (345)
T ss_pred HHHhhCcEEEEEeecccCCcCcc-CCcCCCCCCcccccccCCCchhHHHHHHHH-HHcCCCHHHeEEeeccccceeeccC
Confidence 68899999999999999998643 221111 1 1112 7899999999999999999999987
Q ss_pred CCCCCCCCCCCcCCCC---CCCCCCCCCccccHHHHHHHhhcCCCCCCCCCceeEeecCCCCceeEEEeCCCccccCccc
Q psy13760 67 DTSRTGIPPLKVEGPG---EKGPLVQEEGLLSYGEICSQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYG 143 (242)
Q Consensus 67 ~~~~~g~~~~~~~gp~---~~g~~~~~~G~~~y~eI~~~l~~~~~~~g~~~~~~~~~D~~~~~~py~~~~~~~~~~~~~~ 143 (242)
+.+ ++..+ ++.||+ .+|+++...|.+.|.|||..+.... +++++||++++ +||++.. + +
T Consensus 250 ~~~-~~~~~-p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~-------~~~~~~d~~~~-~~y~~~~-~-------~ 311 (345)
T cd02878 250 PGC-TGPGC-TFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKS-------KNKRWYDTDSD-SDILVYD-D-------D 311 (345)
T ss_pred CCC-CCCCC-cccCCCCCCCCCCCCCchhhhhHHHHHHHHhccC-------CCcEEEecCCC-ccEEEEc-C-------C
Confidence 654 33333 567765 3566677778888899998654321 36899999987 8986432 1 5
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCeEEEeeCCCC
Q psy13760 144 IWVSYEDPETVGVKAAYAKQNGLAGVAMVDLSLD 177 (242)
Q Consensus 144 ~wisyDd~~Si~~K~~y~~~~gLgGv~vW~l~~D 177 (242)
+||+|||++||++|++||++++|||+|+|+|++|
T Consensus 312 ~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 312 QWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 8999999999999999999999999999999987
No 5
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=99.96 E-value=1.6e-29 Score=228.26 Aligned_cols=151 Identities=32% Similarity=0.505 Sum_probs=126.9
Q ss_pred chhhhhhhhhhhhhhhhccCCCCCCCCCCccccc--------hhh------hccCCCCcceEEeeecceeeEEecCCCCC
Q psy13760 5 GVIASVLVVMVVSARQILASEDSLATRPPKVICH--------YTD------IAFVGKVNKLILAIPTYGRTWVINKDTSR 70 (242)
Q Consensus 5 ~~~~~~l~~~~~~~~d~~g~~~s~~~g~~a~l~~--------y~~------~~~Gvp~~KLvLGiP~YGr~~~~~~~~~~ 70 (242)
..|+.++|.+.+|+||++++| +..+||+||+.. .++ ++.|+||+||+||||||||.|++.++..
T Consensus 170 ~~l~~~vD~v~vm~YD~~~~~-~~~~g~~spl~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YG~~~~~~~~~~- 247 (334)
T smart00636 170 PAIAKYLDFINLMTYDFHGAW-SNPTGHNAPLYAGPGDPEKYNVDYAVKYYLCKGVPPSKLVLGIPFYGRGWTLVDGSN- 247 (334)
T ss_pred HHHHhhCcEEEEeeeccCCCC-CCCCCCCCcCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEeeccccCccccCCCCc-
Confidence 568889999999999999985 457899999853 111 6689999999999999999999987643
Q ss_pred CCCCCCCcCCCCCCCCCCCCCccccHHHHHHHhhcCCCCCCCCCceeEeecCCCCceeEEEeCCCccccCcccEEEEeCC
Q psy13760 71 TGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYED 150 (242)
Q Consensus 71 ~g~~~~~~~gp~~~g~~~~~~G~~~y~eI~~~l~~~~~~~g~~~~~~~~~D~~~~~~py~~~~~~~~~~~~~~~wisyDd 150 (242)
.+.. +++.|++.+|+++..+|.++|.|||+.+ + ++..||++++ +||+|+. .+++||+|||
T Consensus 248 ~~~~-~~~~g~~~~~~~~~~~~~~~y~ei~~~~--~---------~~~~~d~~~~-~~y~~~~-------~~~~~v~ydd 307 (334)
T smart00636 248 NGPG-APFTGPATGGPGTWEGGVVDYREICKLL--G---------ATVVWDDTAK-APYAYNP-------GTGQWVSYDD 307 (334)
T ss_pred CCCC-CcccCCCCCCCCCCcccchhHHHHHhhc--C---------cEEEEcCCCc-eeEEEEC-------CCCEEEEcCC
Confidence 2222 2577888888899999999999999875 1 4789999986 8999874 1268999999
Q ss_pred HHHHHHHHHHHHHcCCCeEEEeeCCCC
Q psy13760 151 PETVGVKAAYAKQNGLAGVAMVDLSLD 177 (242)
Q Consensus 151 ~~Si~~K~~y~~~~gLgGv~vW~l~~D 177 (242)
++||+.|++||+++||||+|+|+|++|
T Consensus 308 ~~Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 308 PRSIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeecCC
Confidence 999999999999999999999999997
No 6
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=99.96 E-value=2.6e-29 Score=229.67 Aligned_cols=161 Identities=22% Similarity=0.234 Sum_probs=120.5
Q ss_pred hhhhhhhhhhhhhhhhccCCCC--CCCCCCccccc------hhhhccCCCCcceEEeeecceeeEEecCCCCCCC-C--C
Q psy13760 6 VIASVLVVMVVSARQILASEDS--LATRPPKVICH------YTDIAFVGKVNKLILAIPTYGRTWVINKDTSRTG-I--P 74 (242)
Q Consensus 6 ~~~~~l~~~~~~~~d~~g~~~s--~~~g~~a~l~~------y~~~~~Gvp~~KLvLGiP~YGr~~~~~~~~~~~g-~--~ 74 (242)
.|+.++|++.+|+||++++.|+ ..+||++|+.+ ++ +..|+|++|||||||||||.|++.+.....+ + +
T Consensus 174 ~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~~v~~~v~~~-~~~gvp~~KLvLGip~YGr~w~~~~~~~~~~~~~~~ 252 (358)
T cd02875 174 GIADASDFLVVMDYDEQSQIWGKECIAGANSPYSQTLSGYNNF-TKLGIDPKKLVMGLPWYGYDYPCLNGNLEDVVCTIP 252 (358)
T ss_pred HHHhhCCEeeEEeecccCCCCCCCCCCCCCCCchhHHHHHHHH-HHcCCCHHHeEEEeCCCCCceeCCCCcccCcccCCC
Confidence 6899999999999999998776 35788888632 22 7889999999999999999999765431111 0 0
Q ss_pred CCCcCCCCCCCCCCC-CCccccHHHHHHHhhcCCCCCCCCCceeEeecCCCCceeEEEeCCCccccCcccEEEEeCCHHH
Q psy13760 75 PLKVEGPGEKGPLVQ-EEGLLSYGEICSQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPET 153 (242)
Q Consensus 75 ~~~~~gp~~~g~~~~-~~G~~~y~eI~~~l~~~~~~~g~~~~~~~~~D~~~~~~py~~~~~~~~~~~~~~~wisyDd~~S 153 (242)
..+..|+ +++. ..+.++|.|||+.+... ++.+.||+.++ +||.+.. +.+ ...+||+|||++|
T Consensus 253 ~~p~~g~----~~~~~~g~~i~Y~ei~~~~~~~--------~~~~~wD~~~~-~py~~y~-d~~---g~~~~V~ydD~~S 315 (358)
T cd02875 253 KVPFRGA----NCSDAAGRQIPYSEIMKQINSS--------IGGRLWDSEQK-SPFYNYK-DKQ---GNLHQVWYDNPQS 315 (358)
T ss_pred CCCcCCC----CCcCCCCCccCHHHHHHHHhcC--------CCceeeccccc-cceEEEe-cCC---CcEEEEEeCCHHH
Confidence 0012221 1222 23468999999987543 13788999987 8996432 210 1247999999999
Q ss_pred HHHHHHHHHHcCCCeEEEeeCCCCCCCCCCC
Q psy13760 154 VGVKAAYAKQNGLAGVAMVDLSLDDFKGNCG 184 (242)
Q Consensus 154 i~~K~~y~~~~gLgGv~vW~l~~Dd~~g~C~ 184 (242)
|+.|++||+++||||+|+|++++|||+|.|.
T Consensus 316 i~~K~~~a~~~gL~Gv~iW~ld~dD~~g~~~ 346 (358)
T cd02875 316 LSIKVAYAKNLGLKGIGMWNGDLLDYSGLPI 346 (358)
T ss_pred HHHHHHHHHhCCCCeEEEEeccccccCCCch
Confidence 9999999999999999999999999999874
No 7
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=8.6e-29 Score=224.70 Aligned_cols=173 Identities=23% Similarity=0.293 Sum_probs=127.0
Q ss_pred cchhhhhhhhhhhhhhhhccCCCCCCCCCCccccc------------hh----------h--hccCCCCcceEEeeecce
Q psy13760 4 SGVIASVLVVMVVSARQILASEDSLATRPPKVICH------------YT----------D--IAFVGKVNKLILAIPTYG 59 (242)
Q Consensus 4 ~~~~~~~l~~~~~~~~d~~g~~~s~~~g~~a~l~~------------y~----------~--~~~Gvp~~KLvLGiP~YG 59 (242)
-.+|+.+|+.+.+|.|||||+ |...+|||++|+. |+ . .+.++||+|||||+||||
T Consensus 236 ~~~~~~~vDyiNiMTYDf~G~-Wn~~~Gh~a~Ly~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~Yg 314 (441)
T COG3325 236 HAEIAQYVDYINIMTYDFHGA-WNETLGHHAALYGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYG 314 (441)
T ss_pred HHHHHHHHhhhheeeeecccc-cccccccccccccCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccc
Confidence 357999999999999999996 5777999999862 10 1 677899999999999999
Q ss_pred eeEEecCCCCCCCCCCCCcCCC----CCCCCCCCCCccccHH---HHHHHhhcCCCCCCCCCceeEeecCCCCceeEEEe
Q psy13760 60 RTWVINKDTSRTGIPPLKVEGP----GEKGPLVQEEGLLSYG---EICSQLASLTDANASPTTLRRVPDTQKRMGTYAFR 132 (242)
Q Consensus 60 r~~~~~~~~~~~g~~~~~~~gp----~~~g~~~~~~G~~~y~---eI~~~l~~~~~~~g~~~~~~~~~D~~~~~~py~~~ 132 (242)
|+|..++......++- ...+. ...|.+....+..+|. .+-.... + .++|++.||++++ +||+|+
T Consensus 315 Rgw~~v~~~~~~~~~~-~~q~~~n~g~~~Gtw~a~n~~~~~~~~~~l~~n~~------~-~~g~~~~~d~~a~-apyL~n 385 (441)
T COG3325 315 RGWNGVDGGSLGTCPG-LYQGLDNSGIPKGTWEAGNGDKDYGKAYDLDANNA------G-KNGYERYWDDVAK-APYLYN 385 (441)
T ss_pred cccccccCcccCCCCC-cccccCCCCCCCCcccccccCccchhhcccccccc------C-CCCeeEecccccc-cceeec
Confidence 9999887654200110 11111 1123222222222232 2211111 1 2468999999998 999999
Q ss_pred CCCccccCcccEEEEeCCHHHHHHHHHHHHHcCCCeEEEeeCCCCCCCCCCCCCcccccccccccccCc
Q psy13760 133 LPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGENDYHIKSLDKELDTDK 201 (242)
Q Consensus 133 ~~~~~~~~~~~~wisyDd~~Si~~K~~y~~~~gLgGv~vW~l~~Dd~~g~C~~~~~pLl~ai~~~l~~~ 201 (242)
. ++++||||||+|||++|++||++++|||+|+|++++| ....|++++++.+...
T Consensus 386 ~-------~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD--------~n~~llna~~~~l~~~ 439 (441)
T COG3325 386 P-------EKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGD--------ENGVLLNAVNEGLGFN 439 (441)
T ss_pred C-------CCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCC--------cchhHHHHhhcccCCC
Confidence 5 5699999999999999999999999999999999999 2458999999988764
No 8
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=99.93 E-value=2.1e-26 Score=205.86 Aligned_cols=110 Identities=31% Similarity=0.469 Sum_probs=95.0
Q ss_pred chhhhhhhhhhhhhhhhccCCCCCCCCCCccccc------------hhhhccCCCCcceEEeeecceeeEEecCCCCCCC
Q psy13760 5 GVIASVLVVMVVSARQILASEDSLATRPPKVICH------------YTDIAFVGKVNKLILAIPTYGRTWVINKDTSRTG 72 (242)
Q Consensus 5 ~~~~~~l~~~~~~~~d~~g~~~s~~~g~~a~l~~------------y~~~~~Gvp~~KLvLGiP~YGr~~~~~~~~~~~g 72 (242)
..|+.++|.+.+|+||++|+|....+||+++++. ++ ++.|+||+|||||||||||.|++
T Consensus 175 ~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~-~~~g~p~~KlvlGvp~YGr~~~~-------- 245 (299)
T cd02879 175 EAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSW-IKAGVPAKKLVLGLPLYGRAWTL-------- 245 (299)
T ss_pred HHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHH-HHcCCCHHHEEEEeccccccccc--------
Confidence 3588999999999999999998888899988742 22 78999999999999999999974
Q ss_pred CCCCCcCCCCCCCCCCCCCccccHHHHHHHhhcCCCCCCCCCceeEeecCCCCceeEEEeCCCccccCcccEEEEeCCHH
Q psy13760 73 IPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPE 152 (242)
Q Consensus 73 ~~~~~~~gp~~~g~~~~~~G~~~y~eI~~~l~~~~~~~g~~~~~~~~~D~~~~~~py~~~~~~~~~~~~~~~wisyDd~~ 152 (242)
||+.++ +||+++. ++||+|||++
T Consensus 246 -----------------------------------------------~D~~~~-~~y~~~~---------~~wi~ydd~~ 268 (299)
T cd02879 246 -----------------------------------------------YDTTTV-SSYVYAG---------TTWIGYDDVQ 268 (299)
T ss_pred -----------------------------------------------cCCCcc-eEEEEEC---------CEEEEeCCHH
Confidence 233333 6888873 6899999999
Q ss_pred HHHHHHHHHHHcCCCeEEEeeCCCCCCC
Q psy13760 153 TVGVKAAYAKQNGLAGVAMVDLSLDDFK 180 (242)
Q Consensus 153 Si~~K~~y~~~~gLgGv~vW~l~~Dd~~ 180 (242)
||+.|++||+++||||+|+|++++||..
T Consensus 269 Si~~K~~~a~~~~lgGv~~W~l~~Dd~~ 296 (299)
T cd02879 269 SIAVKVKYAKQKGLLGYFAWAVGYDDNN 296 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeecCCcc
Confidence 9999999999999999999999999964
No 9
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=99.92 E-value=3.4e-25 Score=198.73 Aligned_cols=139 Identities=20% Similarity=0.233 Sum_probs=110.9
Q ss_pred chhhhhhhhhhhhhhhhccCCCCCCCCCCcccc------chhhhccCCCCcceEEeeecceeeEEecCCCCCCCCCCCCc
Q psy13760 5 GVIASVLVVMVVSARQILASEDSLATRPPKVIC------HYTDIAFVGKVNKLILAIPTYGRTWVINKDTSRTGIPPLKV 78 (242)
Q Consensus 5 ~~~~~~l~~~~~~~~d~~g~~~s~~~g~~a~l~------~y~~~~~Gvp~~KLvLGiP~YGr~~~~~~~~~~~g~~~~~~ 78 (242)
..|+.++|.+.+|+||+++++ ..+||++++. +| +.+|+|++||+||||||||.|++..+..
T Consensus 163 ~~l~~~vD~v~lm~YD~~~~~--~~~gp~a~~~~~~~~~~~--~~~gvp~~KlvlGip~YG~~w~~~~~~~--------- 229 (313)
T cd02874 163 AAIGKIVDFVVLMTYDWHWRG--GPPGPVAPIGWVERVLQY--AVTQIPREKILLGIPLYGYDWTLPYKKG--------- 229 (313)
T ss_pred HHHHhhCCEEEEEEeccCCCC--CCCCccCChHHHHHHHHH--HHhcCCHHHEEEeecccccccccCCCCC---------
Confidence 467889999999999999984 4578998863 33 4589999999999999999999754210
Q ss_pred CCCCCCCCCCCCCccccHHHHHHHhhcCCCCCCCCCceeEeecCCCCceeEEEeCCCccccCcccEEEEeCCHHHHHHHH
Q psy13760 79 EGPGEKGPLVQEEGLLSYGEICSQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKA 158 (242)
Q Consensus 79 ~gp~~~g~~~~~~G~~~y~eI~~~l~~~~~~~g~~~~~~~~~D~~~~~~py~~~~~~~~~~~~~~~wisyDd~~Si~~K~ 158 (242)
...+.++|.++|+++.+.+ ++..||+.++ +||.+..+. ....+||+|||++|++.|+
T Consensus 230 ----------~~~~~~~~~~~~~~~~~~~--------~~~~~d~~~~-~~~~~y~~~----~g~~~~v~y~d~~Si~~K~ 286 (313)
T cd02874 230 ----------GKASTISPQQAINLAKRYG--------AEIQYDEEAQ-SPFFRYVDE----QGRRHEVWFEDARSLQAKF 286 (313)
T ss_pred ----------cCccccCHHHHHHHHHHcC--------CCeEECcccC-CCcEEEEeC----CCCEEEEEeCcHHHHHHHH
Confidence 1124578899988876642 4789999987 888543211 1236899999999999999
Q ss_pred HHHHHcCCCeEEEeeCCCCCC
Q psy13760 159 AYAKQNGLAGVAMVDLSLDDF 179 (242)
Q Consensus 159 ~y~~~~gLgGv~vW~l~~Dd~ 179 (242)
+|++++||||+++|++++||.
T Consensus 287 ~~~~~~~lgGv~iW~lg~dD~ 307 (313)
T cd02874 287 ELAKEYGLRGVSYWRLGLEDP 307 (313)
T ss_pred HHHHHcCCCeEEEEECCCCCc
Confidence 999999999999999999995
No 10
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=99.92 E-value=6.7e-25 Score=197.58 Aligned_cols=150 Identities=27% Similarity=0.407 Sum_probs=118.2
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCCCCccccch---------------hhhccCCCCcceEEeeecceeeEEecCCCCC
Q psy13760 6 VIASVLVVMVVSARQILASEDSLATRPPKVICHY---------------TDIAFVGKVNKLILAIPTYGRTWVINKDTSR 70 (242)
Q Consensus 6 ~~~~~l~~~~~~~~d~~g~~~s~~~g~~a~l~~y---------------~~~~~Gvp~~KLvLGiP~YGr~~~~~~~~~~ 70 (242)
.|++++|++.+|+||++++|.. .++|++++... + +..|+||+||+||||+|||.|++......
T Consensus 179 ~l~~~vD~v~~m~yD~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~~-~~~g~p~~Kl~lglp~yg~~~~~~~~~~~ 256 (343)
T PF00704_consen 179 ELAQYVDYVNLMTYDYHGPWSD-VTGPNAPLYDSSWDSNYYSVDSAVQYW-IKAGVPPSKLVLGLPFYGRSWTLVNGSPN 256 (343)
T ss_dssp HHHTTSSEEEEETTSSSSTTSS-BETTSSSSSHTTTSGTSSSHHHHHHHH-HHTTSTGGGEEEEEESEEEEEESSSSTTS
T ss_pred cccccccccccccccCCCCccc-ccccccccccCCccCCCceeeeehhhh-ccccCChhheeecCCcccccceecCCcCC
Confidence 5788899999999999997766 88999886421 2 78899999999999999999999876532
Q ss_pred CCCCCCCcCCCCCCCCCCCCCccccHHHHHHHhhcCCCCCCCCCceeEeecCCCCceeEEEeCCCccccCcccEEEEeCC
Q psy13760 71 TGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYED 150 (242)
Q Consensus 71 ~g~~~~~~~gp~~~g~~~~~~G~~~y~eI~~~l~~~~~~~g~~~~~~~~~D~~~~~~py~~~~~~~~~~~~~~~wisyDd 150 (242)
.... +.. ..++..+..+|.+.|.++|..+... ++...||+.++ +||.+.. +.++||+|||
T Consensus 257 ~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~d~~~~-~~y~~~~-------~~~~~i~~e~ 316 (343)
T PF00704_consen 257 GPWG--PAY--WSPGKGTKNAGILSYYELCALLKSN--------GYTVQWDDTAQ-APYAYND-------DKKHWISYED 316 (343)
T ss_dssp TTTB--BEE--SEETTTTSBTTEEEHHHHHHHTHHT--------TEEEEEETTTT-EEEEEET-------TTTEEEEE--
T ss_pred CCCC--ccc--ccccccccCCCccccccchhhcccC--------CcceEEeeccc-ceEEEec-------CCCeEEEeCC
Confidence 1111 011 1234556778899999999987543 25889999876 9999884 2379999999
Q ss_pred HHHHHHHHHHHHHcCCCeEEEeeCCCC
Q psy13760 151 PETVGVKAAYAKQNGLAGVAMVDLSLD 177 (242)
Q Consensus 151 ~~Si~~K~~y~~~~gLgGv~vW~l~~D 177 (242)
++|+++|++||+++||||+++|+|++|
T Consensus 317 ~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 317 PRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 999999999999999999999999998
No 11
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=99.92 E-value=3.2e-25 Score=199.97 Aligned_cols=112 Identities=27% Similarity=0.396 Sum_probs=97.8
Q ss_pred chhhhhhhhhhhhhhhhccCCCCCCCCCCccccch----------------hhhccCCCCcceEEeeecceeeEEecCCC
Q psy13760 5 GVIASVLVVMVVSARQILASEDSLATRPPKVICHY----------------TDIAFVGKVNKLILAIPTYGRTWVINKDT 68 (242)
Q Consensus 5 ~~~~~~l~~~~~~~~d~~g~~~s~~~g~~a~l~~y----------------~~~~~Gvp~~KLvLGiP~YGr~~~~~~~~ 68 (242)
..|+.++|.+.+|+||++|+|+ ..+||+|+++.. + +++|+|++|||||||||||.|++
T Consensus 195 ~~l~~~vD~vnlMtYD~~g~w~-~~~g~~spL~~~~~~~~~~~~v~~~v~~~-~~~gvp~~KlvlGip~YGr~~~~---- 268 (322)
T cd06548 195 AEIAKYLDFINLMTYDFHGAWS-NTTGHHSNLYASPADPPGGYSVDAAVNYY-LSAGVPPEKLVLGVPFYGRGWTG---- 268 (322)
T ss_pred HHHhhcCCEEEEEEeeccCCCC-CCCCCCCCCCCCCCCCCCCccHHHHHHHH-HHcCCCHHHeEEEecccccccCC----
Confidence 3688999999999999999975 678999987431 1 78899999999999999999974
Q ss_pred CCCCCCCCCcCCCCCCCCCCCCCccccHHHHHHHhhcCCCCCCCCCceeEeecCCCCceeEEEeCCCccccCcccEEEEe
Q psy13760 69 SRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSY 148 (242)
Q Consensus 69 ~~~g~~~~~~~gp~~~g~~~~~~G~~~y~eI~~~l~~~~~~~g~~~~~~~~~D~~~~~~py~~~~~~~~~~~~~~~wisy 148 (242)
++..||+.++ +||+|+. ..++||+|
T Consensus 269 -----------------------------------------------~~~~~D~~~~-~~y~~~~-------~~~~~v~y 293 (322)
T cd06548 269 -----------------------------------------------YTRYWDEVAK-APYLYNP-------STKTFISY 293 (322)
T ss_pred -----------------------------------------------cEEEEcCCcc-eeEEEeC-------CCCeEEEe
Confidence 0568999987 8999873 23789999
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEeeCCCC
Q psy13760 149 EDPETVGVKAAYAKQNGLAGVAMVDLSLD 177 (242)
Q Consensus 149 Dd~~Si~~K~~y~~~~gLgGv~vW~l~~D 177 (242)
||++||++|++||+++||||+|+|++++|
T Consensus 294 dd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 294 DDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred CCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 99999999999999999999999999998
No 12
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=99.90 E-value=6e-24 Score=191.30 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=100.5
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCCCCccccc------hhhhccC-CCCcceEEeeecceeeEEecCCCCCCCCCCCCc
Q psy13760 6 VIASVLVVMVVSARQILASEDSLATRPPKVICH------YTDIAFV-GKVNKLILAIPTYGRTWVINKDTSRTGIPPLKV 78 (242)
Q Consensus 6 ~~~~~l~~~~~~~~d~~g~~~s~~~g~~a~l~~------y~~~~~G-vp~~KLvLGiP~YGr~~~~~~~~~~~g~~~~~~ 78 (242)
.|+.++|++.+|+||++|+ ..+||+||+.+ |+ ++.| +|++|||||||||||.|++.+. +.+ .
T Consensus 174 ~l~~~vD~v~lMtYD~~~~---~~~g~~apl~~v~~~v~~~-~~~~~vp~~KlvlGip~YG~~w~~~~~----~~~---~ 242 (318)
T cd02876 174 KLAPHVDGFSLMTYDYSSP---QRPGPNAPLSWVRSCLELL-LPESGKKRAKILLGLNFYGNDYTLPGG----GGA---I 242 (318)
T ss_pred HHHhhccEEEEEeeccCCC---CCCCCCCCcHHHHHHHHHH-HhcCCCCHHHeEEeccccccccccCCC----Cce---e
Confidence 5889999999999999987 67899999743 33 6666 9999999999999999987541 110 1
Q ss_pred CCCCCCCCCCCCCccccHHHHHHHhhcCCCCCCCCCceeEeecCCCCceeEEEeCCCccccCcccEEEEeCCHHHHHHHH
Q psy13760 79 EGPGEKGPLVQEEGLLSYGEICSQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKA 158 (242)
Q Consensus 79 ~gp~~~g~~~~~~G~~~y~eI~~~l~~~~~~~g~~~~~~~~~D~~~~~~py~~~~~~~~~~~~~~~wisyDd~~Si~~K~ 158 (242)
. + ..|.++++ .. +++..||++++..+|.|... ..++||+|||++||+.|+
T Consensus 243 ~------------~-~~~~~~~~---~~--------~~~~~~d~~~~~~~~~y~~~------~~~~~v~ydd~~Si~~K~ 292 (318)
T cd02876 243 T------------G-SEYLKLLK---SN--------KPKLQWDEKSAEHFFEYKNK------GGKHAVFYPTLKSIQLRL 292 (318)
T ss_pred e------------h-HHHHHHHH---hc--------CCCceeccCCCcceEEEecC------CCcEEEEeCCHHHHHHHH
Confidence 0 0 23445444 22 13678999865355777631 136899999999999999
Q ss_pred HHHHHcCCCeEEEeeCCCCC
Q psy13760 159 AYAKQNGLAGVAMVDLSLDD 178 (242)
Q Consensus 159 ~y~~~~gLgGv~vW~l~~Dd 178 (242)
+||+++|| |+|+|++++++
T Consensus 293 ~~a~~~~l-Gv~~W~lg~~~ 311 (318)
T cd02876 293 DLAKELGT-GISIWELGQGL 311 (318)
T ss_pred HHHHHcCC-cEEEEcccCCc
Confidence 99999999 99999999986
No 13
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=99.85 E-value=4.5e-21 Score=171.33 Aligned_cols=136 Identities=20% Similarity=0.121 Sum_probs=95.8
Q ss_pred chhhhhhhhhhhhhhhhccCCCCCCCCCCccccchh---h-hccCCCCcceEEeeecceeeEEecCCCCCCCCCCCCcCC
Q psy13760 5 GVIASVLVVMVVSARQILASEDSLATRPPKVICHYT---D-IAFVGKVNKLILAIPTYGRTWVINKDTSRTGIPPLKVEG 80 (242)
Q Consensus 5 ~~~~~~l~~~~~~~~d~~g~~~s~~~g~~a~l~~y~---~-~~~Gvp~~KLvLGiP~YGr~~~~~~~~~~~g~~~~~~~g 80 (242)
..|+.++|.+.+|+||+++++. ..||.+++.... . +..|+|++||+||||||||.|++.....
T Consensus 155 ~~l~~~~D~v~lMtYD~~~~~~--~~gp~a~~~~~~~~~~~~~~~vp~~KlvlGip~YG~~w~~~~~~~----------- 221 (298)
T cd06549 155 KALARNADKLILMAYDEHYQGG--APGPIASQDWFESNLAQAVKKLPPEKLIVALGSYGYDWTKGGNTK----------- 221 (298)
T ss_pred HHHHHhCCEEEEEEeccCCCCC--CCCCCCChhhHHHHHHHHHhCCCHHHEEEEecccCccccCCCCCc-----------
Confidence 3688899999999999998753 356666653321 0 4579999999999999999998643210
Q ss_pred CCCCCCCCCCCccccHHHHHHHhhcCCCCCCCCCceeEeecCCCCcee-EEEeCCCccccCcccEEEEeCCHHHHHHHHH
Q psy13760 81 PGEKGPLVQEEGLLSYGEICSQLASLTDANASPTTLRRVPDTQKRMGT-YAFRLPNKQLKQEYGIWVSYEDPETVGVKAA 159 (242)
Q Consensus 81 p~~~g~~~~~~G~~~y~eI~~~l~~~~~~~g~~~~~~~~~D~~~~~~p-y~~~~~~~~~~~~~~~wisyDd~~Si~~K~~ 159 (242)
.++..+...++.+.+ ....||+... .| |.+...+ ...++|+|||++|++.|++
T Consensus 222 ------------~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~-----g~~h~Vw~~d~~Sl~~K~~ 275 (298)
T cd06549 222 ------------AISSEAAWLLAAHAS--------AAVKFDDKAS-NATYFFYDDE-----GVSHEVWMLDAVTLFNQLK 275 (298)
T ss_pred ------------ccCHHHHHHHHHHcC--------Ccceeccccc-CCceEEEcCC-----CcEEEEEeccHHHHHHHHH
Confidence 123334433333321 1456766554 45 4443211 2257888999999999999
Q ss_pred HHHHcCCCeEEEeeCCCCCC
Q psy13760 160 YAKQNGLAGVAMVDLSLDDF 179 (242)
Q Consensus 160 y~~~~gLgGv~vW~l~~Dd~ 179 (242)
+|+++||+|+++|+|++||.
T Consensus 276 ~a~~~~l~Gva~W~lg~ed~ 295 (298)
T cd06549 276 AVQRLGPAGVALWRLGSEDP 295 (298)
T ss_pred HHHHcCCCcEEEEeccCCCC
Confidence 99999999999999999985
No 14
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=99.74 E-value=1.8e-18 Score=157.22 Aligned_cols=139 Identities=23% Similarity=0.301 Sum_probs=92.4
Q ss_pred cchhhhhhhhhhhhhhhhccCCCCCCCCCCccc------cchhhhccCCCCcceEEeeecceeeEEecCCCCCCCCCCCC
Q psy13760 4 SGVIASVLVVMVVSARQILASEDSLATRPPKVI------CHYTDIAFVGKVNKLILAIPTYGRTWVINKDTSRTGIPPLK 77 (242)
Q Consensus 4 ~~~~~~~l~~~~~~~~d~~g~~~s~~~g~~a~l------~~y~~~~~Gvp~~KLvLGiP~YGr~~~~~~~~~~~g~~~~~ 77 (242)
-|+|||++.+|+ ||-+.+| ...||-|++ ..|. ..-+|++||+||||+||+.|.+..+.. |..+
T Consensus 269 ~Gkiad~v~lMt---Yd~h~~g--G~PG~vA~i~~vr~~ieya--~T~iP~~Kv~mGip~YGYDW~~~y~~~--g~~~-- 337 (423)
T COG3858 269 LGKIADFVILMT---YDWHYSG--GPPGPVASIGWVRKVIEYA--LTVIPAEKVMMGIPLYGYDWTLPYDPL--GYLA-- 337 (423)
T ss_pred hceeeeEEEEEE---eccCcCC--CCCCcccCchhHhhhhhhh--heecchHHeEEccccccccccCCCCCC--ccee--
Confidence 366777765555 4433332 233444554 2353 347999999999999999999866431 2111
Q ss_pred cCCCCCCCCCCCCCccccHHHHHHHhhcCCCCCCCCCceeEeecCCCCceeEEEeCCCccccCcccEEEEeCCHHHHHHH
Q psy13760 78 VEGPGEKGPLVQEEGLLSYGEICSQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVK 157 (242)
Q Consensus 78 ~~gp~~~g~~~~~~G~~~y~eI~~~l~~~~~~~g~~~~~~~~~D~~~~~~py~~~~~~~~~~~~~~~wisyDd~~Si~~K 157 (242)
. . ++..+-..+.... ++ +..||..++ .||.+.. |+ ....++|+|||.||+..|
T Consensus 338 -~------------a-~~~~~~i~ia~~y----~A----~Iq~D~~~q-sp~F~y~-D~---eg~~h~VWfeD~~s~~~k 390 (423)
T COG3858 338 -R------------A-ISPDEAIDIANRY----NA----TIQYDATSQ-SPFFYYV-DK---EGRYHEVWFEDARSFQTK 390 (423)
T ss_pred -e------------e-cCcchhhhhhccc----CC----ccCcCcccc-CceEEEE-cC---CCceEEEEcCchHHHHHH
Confidence 0 0 2222211111111 22 677999997 8985554 43 235899999999999999
Q ss_pred HHHHHHcCCCeEEEeeCCCCCCC
Q psy13760 158 AAYAKQNGLAGVAMVDLSLDDFK 180 (242)
Q Consensus 158 ~~y~~~~gLgGv~vW~l~~Dd~~ 180 (242)
.+++|++||.||.+|.|++.|.+
T Consensus 391 ~~lik~ygl~GVs~W~Lg~e~p~ 413 (423)
T COG3858 391 LDLIKEYGLRGVSYWVLGQEDPR 413 (423)
T ss_pred HHHHHHcCCceEEEEEecCcchh
Confidence 99999999999999999999863
No 15
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=99.60 E-value=7.4e-16 Score=134.56 Aligned_cols=97 Identities=21% Similarity=0.188 Sum_probs=79.4
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCCCCcccc------chhhhccCC-CCcceEEeeecceeeEEecCCCCCCCCCCCCc
Q psy13760 6 VIASVLVVMVVSARQILASEDSLATRPPKVIC------HYTDIAFVG-KVNKLILAIPTYGRTWVINKDTSRTGIPPLKV 78 (242)
Q Consensus 6 ~~~~~l~~~~~~~~d~~g~~~s~~~g~~a~l~------~y~~~~~Gv-p~~KLvLGiP~YGr~~~~~~~~~~~g~~~~~~ 78 (242)
.++.++|.+.+|+||++|+|+...+||++++. .|+ +..|+ |++||+||||||||.|.
T Consensus 150 ~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~~~~~~v~~~-~~~g~ip~~KlvlGlp~YG~~w~--------------- 213 (253)
T cd06545 150 STLAYFDFINIMSYDATGPWWGDNPGQHSSYDDAVNDLNYW-NERGLASKDKLVLGLPFYGYGFY--------------- 213 (253)
T ss_pred HHHhhCCEEEEEcCcCCCCCCCCCCCCCCchHhHHHHHHHH-HHcCCCCHHHEEEEeCCcccccc---------------
Confidence 46778999999999999999877889998853 233 67787 99999999999998771
Q ss_pred CCCCCCCCCCCCCccccHHHHHHHhhcCCCCCCCCCceeEeecCCCCceeEEEeCCCccccCcccEEEEeCCHHHHHHHH
Q psy13760 79 EGPGEKGPLVQEEGLLSYGEICSQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKA 158 (242)
Q Consensus 79 ~gp~~~g~~~~~~G~~~y~eI~~~l~~~~~~~g~~~~~~~~~D~~~~~~py~~~~~~~~~~~~~~~wisyDd~~Si~~K~ 158 (242)
|+.+.+++.|+
T Consensus 214 ---------------------------------------------------------------------~~~~~~~~~~~ 224 (253)
T cd06545 214 ---------------------------------------------------------------------YNGIPTIRNKV 224 (253)
T ss_pred ---------------------------------------------------------------------CCCHHHHHHHH
Confidence 12234689999
Q ss_pred HHHHHcCCCeEEEeeCCCCCCCCCCCCCcccccccc
Q psy13760 159 AYAKQNGLAGVAMVDLSLDDFKGNCGENDYHIKSLD 194 (242)
Q Consensus 159 ~y~~~~gLgGv~vW~l~~Dd~~g~C~~~~~pLl~ai 194 (242)
++++++ +||+|+|++++|.. +.++|+.+|
T Consensus 225 ~~~~~~-~gG~~~w~~~~d~~------~~~~l~~~~ 253 (253)
T cd06545 225 AFAKQN-YGGVMIWELSQDAS------GENSLLNAI 253 (253)
T ss_pred HHHHHh-cCeEEEEeccCCCC------CCcchhhcC
Confidence 999999 99999999999973 345888775
No 16
>KOG2091|consensus
Probab=98.20 E-value=7.3e-06 Score=72.88 Aligned_cols=132 Identities=11% Similarity=0.130 Sum_probs=87.1
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCCCCccccchhh-h--ccC--CCCcceEEeeecceeeEEecCCCCCCCCCCCCcCC
Q psy13760 6 VIASVLVVMVVSARQILASEDSLATRPPKVICHYTD-I--AFV--GKVNKLILAIPTYGRTWVINKDTSRTGIPPLKVEG 80 (242)
Q Consensus 6 ~~~~~l~~~~~~~~d~~g~~~s~~~g~~a~l~~y~~-~--~~G--vp~~KLvLGiP~YGr~~~~~~~~~~~g~~~~~~~g 80 (242)
.|+.+++.+.+|-||+-.+ .-+||++|+.+... + ..| .-+.||+|||-|||..|...+. .
T Consensus 248 ~L~~~~d~fsLmTYd~s~~---~~pg~nap~~wi~~~l~~l~~~s~~r~KiLlGlNFYG~d~~~gdg-----~------- 312 (392)
T KOG2091|consen 248 KLVAVYDGFSLMTYDYSLV---QGPGPNAPLEWIRHCLHHLGGSSAKRPKILLGLNFYGNDFNLGDG-----G------- 312 (392)
T ss_pred HHHHhhhheeEEEeecccc---cCCCCCCCHHHHHHHHHHhCCccccccceeEeeeccccccccCCC-----C-------
Confidence 3567777888888875542 24567788543211 1 111 3458999999999999986221 1
Q ss_pred CCCCCCCCCCCccccHHHHHHHhhcCCCCCCCCCceeEeecCCCCceeEEEeCCCccccCcccEEEEeCCHHHHHHHHHH
Q psy13760 81 PGEKGPLVQEEGLLSYGEICSQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAY 160 (242)
Q Consensus 81 p~~~g~~~~~~G~~~y~eI~~~l~~~~~~~g~~~~~~~~~D~~~~~~py~~~~~~~~~~~~~~~wisyDd~~Si~~K~~y 160 (242)
+.++...-...++.... +-.||+++.---+.|...+ .-++-|.|.+-.||..+.++
T Consensus 313 -----------~~IT~~rYL~lLk~~k~--------~~~~Dees~EH~f~~k~n~-----~gkhivfyPTL~Sl~~Ri~l 368 (392)
T KOG2091|consen 313 -----------EAITAKRYLQLLKGEKS--------VFKFDEESKEHFFEYKRND-----DGKHIVFYPTLTSLELRIEL 368 (392)
T ss_pred -----------CceeHHHHHHHHhccCc--------ceeeccccchhheeeeccC-----CCceEEEecchHhHHHHHHH
Confidence 11455555555554321 6789998862223344222 12567779999999999999
Q ss_pred HHHcCCCeEEEeeCCCC
Q psy13760 161 AKQNGLAGVAMVDLSLD 177 (242)
Q Consensus 161 ~~~~gLgGv~vW~l~~D 177 (242)
|++.|. ||.+|++++-
T Consensus 369 A~~~gv-gISIWe~GqG 384 (392)
T KOG2091|consen 369 ARELGV-GISIWEYGQG 384 (392)
T ss_pred HHHhCC-ceEeeeccCc
Confidence 999995 8999999863
No 17
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=96.92 E-value=0.00082 Score=56.25 Aligned_cols=25 Identities=52% Similarity=0.836 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCCeEEEeeCCCC
Q psy13760 153 TVGVKAAYAKQNGLAGVAMVDLSLD 177 (242)
Q Consensus 153 Si~~K~~y~~~~gLgGv~vW~l~~D 177 (242)
|++.|++|+++++|||+|+|++++|
T Consensus 186 s~~~k~~~~~~~~~gGv~~w~~~~d 210 (210)
T cd00598 186 SLGAKAKYAKQKGLGGVMIWELDQD 210 (210)
T ss_pred hHHHHHHHHHHcCCceEEEEeccCC
Confidence 9999999999999999999999987
No 18
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=95.57 E-value=0.005 Score=54.02 Aligned_cols=54 Identities=11% Similarity=-0.049 Sum_probs=37.5
Q ss_pred hhhhhhhhhhhhhhhccCCCCCCCCCCccccchhh-hccCCCCcceEEeeecceeeEE
Q psy13760 7 IASVLVVMVVSARQILASEDSLATRPPKVICHYTD-IAFVGKVNKLILAIPTYGRTWV 63 (242)
Q Consensus 7 ~~~~l~~~~~~~~d~~g~~~s~~~g~~a~l~~y~~-~~~Gvp~~KLvLGiP~YGr~~~ 63 (242)
++.+++++.+|.+|+|+...+. ..+...+.++ ...++|++||++|+|.+++.|.
T Consensus 168 ~~~~~d~id~~~~qfy~~~~~~---~~~~~~~~~~~~~~~~p~~Kv~lGl~a~~~~~~ 222 (253)
T cd06544 168 YNAYGDYIDYVNYQFYNYGVPT---TVAKYVEFYDEVANNYPGKKVLASFSTDGEDGA 222 (253)
T ss_pred HHHhhCceeEEEhhhhCCCCCC---CHHHHHHHHHHHHhCCCcccEEEEEecCCCccC
Confidence 5677888888888888876532 1222222221 4568999999999999997764
No 19
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=91.72 E-value=0.11 Score=45.59 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=25.1
Q ss_pred ccchhhhhccccCCCceEEEeecCcccC
Q psy13760 206 ELYKQVTALKTSYPDLNIILGVGGFEDQ 233 (242)
Q Consensus 206 ~~~~~~~~~k~~~P~~~~~~~~~g~~~~ 233 (242)
..++++++||.++|++|+++|+||+...
T Consensus 56 ~~~~~~~~lK~~~p~lKvllSiGG~~~~ 83 (253)
T cd06544 56 LTPEAVKSIKAQHPNVKVVISIGGRGVQ 83 (253)
T ss_pred cCHHHHHHHHHhCCCcEEEEEeCCCCCC
Confidence 4577899999999999999999999874
No 20
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=87.50 E-value=0.34 Score=45.42 Aligned_cols=30 Identities=40% Similarity=0.795 Sum_probs=26.2
Q ss_pred cccchhhhhccccCCCceEEEeecCcccCC
Q psy13760 205 HELYKQVTALKTSYPDLNIILGVGGFEDQK 234 (242)
Q Consensus 205 ~~~~~~~~~~k~~~P~~~~~~~~~g~~~~~ 234 (242)
.+.++++++||.++|++|+++|+||+....
T Consensus 59 ~~~~~~~~~lk~~~p~lKvllSiGGw~~~~ 88 (413)
T cd02873 59 KSHYRAITSLKRKYPHLKVLLSVGGDRDTD 88 (413)
T ss_pred hhHHHHHHHHHhhCCCCeEEEeecCCCCCC
Confidence 356889999999999999999999998653
No 21
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=83.17 E-value=0.65 Score=41.86 Aligned_cols=29 Identities=31% Similarity=0.569 Sum_probs=25.6
Q ss_pred cccchhhhhccccCCCceEEEeecCcccC
Q psy13760 205 HELYKQVTALKTSYPDLNIILGVGGFEDQ 233 (242)
Q Consensus 205 ~~~~~~~~~~k~~~P~~~~~~~~~g~~~~ 233 (242)
.+.++++++||.++|++|+++|+||++..
T Consensus 69 ~~~~~~~~~lk~~~p~lkvl~siGG~~~s 97 (322)
T cd06548 69 KGNFGQLRKLKQKNPHLKILLSIGGWTWS 97 (322)
T ss_pred hhHHHHHHHHHHhCCCCEEEEEEeCCCCC
Confidence 46678889999999999999999998764
No 22
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=79.44 E-value=1.7 Score=40.86 Aligned_cols=31 Identities=29% Similarity=0.695 Sum_probs=28.0
Q ss_pred cccchhhhhccccCCCceEEEeecCcccCCC
Q psy13760 205 HELYKQVTALKTSYPDLNIILGVGGFEDQKD 235 (242)
Q Consensus 205 ~~~~~~~~~~k~~~P~~~~~~~~~g~~~~~~ 235 (242)
++++.....+|..+|++|+++|||||..++.
T Consensus 111 ~G~~~~L~~lk~~~~d~k~l~SIGGWs~S~~ 141 (441)
T COG3325 111 KGHFGALFDLKATYPDLKTLISIGGWSDSGG 141 (441)
T ss_pred cchHHHHHHHhhhCCCceEEEeecccccCCC
Confidence 6778888899999999999999999998864
No 23
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=78.49 E-value=0.99 Score=39.08 Aligned_cols=46 Identities=9% Similarity=-0.083 Sum_probs=30.5
Q ss_pred chhhhhhhhhhhhhhhhccCCCCCCCCCCccccchhhhccCCCCcceEEeeecce
Q psy13760 5 GVIASVLVVMVVSARQILASEDSLATRPPKVICHYTDIAFVGKVNKLILAIPTYG 59 (242)
Q Consensus 5 ~~~~~~l~~~~~~~~d~~g~~~s~~~g~~a~l~~y~~~~~Gvp~~KLvLGiP~YG 59 (242)
-.|+++++.+.+|+|+ .+ +..+.. .... ...|+|++|+++|++|++
T Consensus 162 ~~~~~~vDyv~~~~y~---~~-~~~~~~---~~~~--~~~g~~~~k~i~~~~~~~ 207 (255)
T cd06542 162 EEVSPYVDYVIYQYYG---SS-SSSTQR---NWNT--NSPKIPPEKMVYTESFEE 207 (255)
T ss_pred HHHHHhCCEEEeeccC---CC-CccCCc---cccc--ccCCCCHHHceeeeeeec
Confidence 3567888888888775 32 221211 1111 467999999999999995
No 24
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=78.21 E-value=1.2 Score=40.14 Aligned_cols=51 Identities=10% Similarity=0.065 Sum_probs=31.1
Q ss_pred hhhhhhhhhhhhhhhhccCC--CCCCCCCCccccch-----hhhccC-----------CCCcceEEeeecc
Q psy13760 6 VIASVLVVMVVSARQILASE--DSLATRPPKVICHY-----TDIAFV-----------GKVNKLILAIPTY 58 (242)
Q Consensus 6 ~~~~~l~~~~~~~~d~~g~~--~s~~~g~~a~l~~y-----~~~~~G-----------vp~~KLvLGiP~Y 58 (242)
.|++.++.+.++.||.++.. ..... .....++ ..+..| +|++||+||+|..
T Consensus 180 ~~~~~~D~invqfYn~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 180 NLRDDLTWLNVQYYNSGGMGGCDGQSY--SQGTADFLVALADMLLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred HhhhheeEEEEeeccCCCcccccccCC--ccchhHHHHHHHHHHHcCCCccCCcccccCChhhEEEeccCC
Confidence 46778999999999987743 11111 0111111 013344 8999999999974
No 25
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=78.11 E-value=1.3 Score=40.43 Aligned_cols=29 Identities=34% Similarity=0.658 Sum_probs=24.8
Q ss_pred cccchhhhhccccCCCceEEEeecCcccC
Q psy13760 205 HELYKQVTALKTSYPDLNIILGVGGFEDQ 233 (242)
Q Consensus 205 ~~~~~~~~~~k~~~P~~~~~~~~~g~~~~ 233 (242)
.+.++++.++|.++|++|+++|+||+...
T Consensus 55 ~~~~~~~~~lk~~~p~lkvlisiGG~~~~ 83 (362)
T cd02872 55 LGLYERFNALKEKNPNLKTLLAIGGWNFG 83 (362)
T ss_pred hhHHHHHHHHHhhCCCceEEEEEcCCCCC
Confidence 45577788899999999999999998754
No 26
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=75.75 E-value=1.1 Score=39.39 Aligned_cols=41 Identities=10% Similarity=0.055 Sum_probs=28.2
Q ss_pred hhhhhhhhhhhhhccCCCCCCCCCCccccchhh-hccCCCCcceEEeeec
Q psy13760 9 SVLVVMVVSARQILASEDSLATRPPKVICHYTD-IAFVGKVNKLILAIPT 57 (242)
Q Consensus 9 ~~l~~~~~~~~d~~g~~~s~~~g~~a~l~~y~~-~~~Gvp~~KLvLGiP~ 57 (242)
+.++++.++-||.+|... ...+|.. ++.++|++||+||+|.
T Consensus 176 ~~~Df~nvQfYn~~g~~~--------~~~~~~~~~~~~~~~~Kv~iGlpa 217 (256)
T cd06546 176 DKIDFYNAQFYNGFGSMS--------SPSDYDAIVAQGWDPERIVIGLLT 217 (256)
T ss_pred CceeEEEEcCcCCCCCcc--------CHHHHHHHHHcCCCcccEEEEEec
Confidence 577888888887665432 1123311 5669999999999994
No 27
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=75.10 E-value=3.3 Score=37.25 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=24.2
Q ss_pred eCCHHHHHHHHHHHHHc-------------CCCeEEEeeCCCCCC
Q psy13760 148 YEDPETVGVKAAYAKQN-------------GLAGVAMVDLSLDDF 179 (242)
Q Consensus 148 yDd~~Si~~K~~y~~~~-------------gLgGv~vW~l~~Dd~ 179 (242)
|=++..+..-+..+++. ++||||+|++++|..
T Consensus 256 yv~~~~l~~~i~~l~~~~~~~~~~~~~~y~~~gGvm~W~~~~d~~ 300 (312)
T cd02871 256 YVSPSEVIKALDCLMKGTNCGSYYPAGGYPSLRGLMTWSINWDAT 300 (312)
T ss_pred ccCHHHHHHHHHHHhcCCCCCcccCCCCCCCcceEEEEEecccCc
Confidence 45567777666766654 499999999999953
No 28
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=71.93 E-value=4.2 Score=36.16 Aligned_cols=32 Identities=31% Similarity=0.410 Sum_probs=25.2
Q ss_pred eCCHHHHHHHHHHHHHc--CCCeEEEeeCCCCCC
Q psy13760 148 YEDPETVGVKAAYAKQN--GLAGVAMVDLSLDDF 179 (242)
Q Consensus 148 yDd~~Si~~K~~y~~~~--gLgGv~vW~l~~Dd~ 179 (242)
|=++..+..-+..++++ ++||||+|++.+|..
T Consensus 237 yv~p~~l~~~v~~~~~~~~~fGGvM~Wd~~~~~~ 270 (280)
T cd02877 237 YVDPSELASLVLPVKQKSPNFGGVMLWDASQDKQ 270 (280)
T ss_pred ccCHHHHHHHHHHHhhcCCCCcEEEEEhHhhccC
Confidence 56788888777665543 699999999999964
No 29
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=69.29 E-value=4.7 Score=36.17 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=28.4
Q ss_pred cEEEEeCCHHHHHHHHHHHHHcCCCeEEEeeCCCCCC
Q psy13760 143 GIWVSYEDPETVGVKAAYAKQNGLAGVAMVDLSLDDF 179 (242)
Q Consensus 143 ~~wisyDd~~Si~~K~~y~~~~gLgGv~vW~l~~Dd~ 179 (242)
.+..+-+|.+.+ .+|++++|||.+.+|+++-|..
T Consensus 234 ~e~ft~~da~~~---~~fA~~~~l~~~s~Ws~~RD~~ 267 (294)
T cd06543 234 SEVFTLADAQTL---VDFAKEKGLGRLSMWSLNRDRP 267 (294)
T ss_pred CceeeHHHHHHH---HHHHHhCCCCeEeeeeccCCCC
Confidence 346677887766 6899999999999999999953
No 30
>KOG2806|consensus
Probab=65.00 E-value=3.7 Score=38.79 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=22.7
Q ss_pred cccchhhhhccccCCCceEEEeecCcc
Q psy13760 205 HELYKQVTALKTSYPDLNIILGVGGFE 231 (242)
Q Consensus 205 ~~~~~~~~~~k~~~P~~~~~~~~~g~~ 231 (242)
.+-+...+.+|..+|++|+++|+||+-
T Consensus 106 ~~f~~~~~~~k~~n~~vK~llSIGG~~ 132 (432)
T KOG2806|consen 106 NRFSSYNQTAKSSNPTVKVMISIGGSH 132 (432)
T ss_pred hhhHHHHHHHHhhCCCceEEEEecCCC
Confidence 345666777999999999999999995
No 31
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=62.93 E-value=4.3 Score=36.40 Aligned_cols=26 Identities=35% Similarity=0.760 Sum_probs=23.0
Q ss_pred cchhhhhccccCCCceEEEeecCccc
Q psy13760 207 LYKQVTALKTSYPDLNIILGVGGFED 232 (242)
Q Consensus 207 ~~~~~~~~k~~~P~~~~~~~~~g~~~ 232 (242)
.+.+++++|.++|++|+++++||+..
T Consensus 53 ~~~~~~~l~~~~~~~kvl~svgg~~~ 78 (334)
T smart00636 53 NFGQLKALKKKNPGLKVLLSIGGWTE 78 (334)
T ss_pred hHHHHHHHHHhCCCCEEEEEEeCCCC
Confidence 46778889999999999999999876
No 32
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=60.61 E-value=5.7 Score=34.26 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHc-CCCeEEEeeCCCCCCCCCCCCCccccccccccc
Q psy13760 150 DPETVGVKAAYAKQN-GLAGVAMVDLSLDDFKGNCGENDYHIKSLDKEL 197 (242)
Q Consensus 150 d~~Si~~K~~y~~~~-gLgGv~vW~l~~Dd~~g~C~~~~~pLl~ai~~~ 197 (242)
...++...++|+.+. +.||+|+|.++.|.. +|+++++.+.
T Consensus 213 ~~~~~~~~A~~~~~~~~~gG~~~y~~~~dy~--------~~~~~~~~~~ 253 (255)
T cd06542 213 SGSSAEQYARWTPAKGGKGGIGTYALDRDYY--------RPYDSAVSKA 253 (255)
T ss_pred cchhHHHHHhcCcccCceEEEEEEecCCCcc--------ccchhhhhhh
Confidence 457777788999888 999999999999852 4666665544
No 33
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=54.10 E-value=7.7 Score=34.60 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=18.6
Q ss_pred hccccCCCceEEEeecCcccC
Q psy13760 213 ALKTSYPDLNIILGVGGFEDQ 233 (242)
Q Consensus 213 ~~k~~~P~~~~~~~~~g~~~~ 233 (242)
.+|..+|++|+++|+||+...
T Consensus 59 ~~k~~~~~lkvlisiGG~~~~ 79 (299)
T cd02879 59 TVKRKNPSVKTLLSIGGGGSD 79 (299)
T ss_pred HHHHhCCCCeEEEEEeCCCCC
Confidence 588999999999999999753
No 34
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=51.57 E-value=6.2 Score=30.29 Aligned_cols=14 Identities=7% Similarity=0.114 Sum_probs=11.2
Q ss_pred hccCCCCcceEEee
Q psy13760 42 IAFVGKVNKLILAI 55 (242)
Q Consensus 42 ~~~Gvp~~KLvLGi 55 (242)
+.+|||++.||||+
T Consensus 84 ve~GVpk~dIVLgF 97 (111)
T PF08869_consen 84 VEAGVPKEDIVLGF 97 (111)
T ss_dssp HHTT--GGGEEETT
T ss_pred HHcCCCHHHEEEcc
Confidence 89999999999995
No 35
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=48.96 E-value=21 Score=31.15 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=19.9
Q ss_pred eCCHHHHHHHHHHHHHc--CCCeEEEee
Q psy13760 148 YEDPETVGVKAAYAKQN--GLAGVAMVD 173 (242)
Q Consensus 148 yDd~~Si~~K~~y~~~~--gLgGv~vW~ 173 (242)
|=++..+..-+..++++ ++||||+|+
T Consensus 225 yv~~~~l~~~v~~l~~~~~~~gGvm~W~ 252 (256)
T cd06546 225 FVPFDTLSSTLSTLRQRYPNFGGVMGWE 252 (256)
T ss_pred ccCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 55778887777766543 799999996
No 36
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=42.38 E-value=19 Score=29.62 Aligned_cols=27 Identities=22% Similarity=0.591 Sum_probs=21.7
Q ss_pred chhhhhccccCCCceEEEeecCcccCC
Q psy13760 208 YKQVTALKTSYPDLNIILGVGGFEDQK 234 (242)
Q Consensus 208 ~~~~~~~k~~~P~~~~~~~~~g~~~~~ 234 (242)
...+.+++..+|++|+++|+||.....
T Consensus 52 ~~~i~~l~~~~~g~kv~~sigg~~~~~ 78 (210)
T cd00598 52 KGALEELASKKPGLKVLISIGGWTDSS 78 (210)
T ss_pred HHHHHHHHHhCCCCEEEEEEcCCCCCC
Confidence 445667788889999999999987654
No 37
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=37.49 E-value=32 Score=18.44 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=18.2
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCC
Q psy13760 144 IWVSYEDPETVGVKAAYAKQNGL 166 (242)
Q Consensus 144 ~wisyDd~~Si~~K~~y~~~~gL 166 (242)
.+++++ ++++..|++|.++.|+
T Consensus 9 ~il~~~-~~~l~~~~~~l~~~g~ 30 (31)
T smart00733 9 QILGYS-EKKLKPKVEFLKELGF 30 (31)
T ss_pred Cccccc-HHHhhHHHHHHHHcCC
Confidence 456677 9999999999997765
No 38
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=30.50 E-value=20 Score=31.81 Aligned_cols=30 Identities=23% Similarity=0.556 Sum_probs=23.7
Q ss_pred cccchhhhhccccCCCceEEEeecCcccCC
Q psy13760 205 HELYKQVTALKTSYPDLNIILGVGGFEDQK 234 (242)
Q Consensus 205 ~~~~~~~~~~k~~~P~~~~~~~~~g~~~~~ 234 (242)
...+...+++|.++|++|+++|+||++...
T Consensus 58 ~~~~~~~~~~~~~~~~~kvllsigg~~~~~ 87 (343)
T PF00704_consen 58 SSGFKNLKELKAKNPGVKVLLSIGGWGMSS 87 (343)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEEETTSSH
T ss_pred ccchhHHHHHHhhccCceEEEEeccccccc
Confidence 455667888999999999999999996554
No 39
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=25.39 E-value=33 Score=30.44 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHH--HHcCCCeEEEeeCCCCCC
Q psy13760 150 DPETVGVKAAYA--KQNGLAGVAMVDLSLDDF 179 (242)
Q Consensus 150 d~~Si~~K~~y~--~~~gLgGv~vW~l~~Dd~ 179 (242)
|+.-+..-.+.. ...++.|+|.|++++|+-
T Consensus 278 dpniv~n~~~rlka~g~~ikGvMTWSvNWD~g 309 (332)
T COG3469 278 DPNIVDNAFNRLKATGCNIKGVMTWSVNWDAG 309 (332)
T ss_pred CHHHHHHHHHHhhccCCcccceEEEEEecccc
Confidence 444444444333 356899999999999983
No 40
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=25.26 E-value=44 Score=30.40 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=18.5
Q ss_pred ccchhhhhccccCCCceEEEeecCcccCCC
Q psy13760 206 ELYKQVTALKTSYPDLNIILGVGGFEDQKD 235 (242)
Q Consensus 206 ~~~~~~~~~k~~~P~~~~~~~~~g~~~~~~ 235 (242)
+.+.+++++|. +|+++|+||+....+
T Consensus 51 ~~~~~~~~~k~----lkvllsiGG~~~s~~ 76 (345)
T cd02878 51 EQFSDFKKLKG----VKKILSFGGWDFSTS 76 (345)
T ss_pred HHHHHHHhhcC----cEEEEEEeCCCCCCC
Confidence 34555665654 999999999986543
No 41
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=24.43 E-value=33 Score=30.51 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=25.9
Q ss_pred hhhhhhhhhhhhhccCCCCCCCCCCccccchhhhccCCCC---cceEEeeecc
Q psy13760 9 SVLVVMVVSARQILASEDSLATRPPKVICHYTDIAFVGKV---NKLILAIPTY 58 (242)
Q Consensus 9 ~~l~~~~~~~~d~~g~~~s~~~g~~a~l~~y~~~~~Gvp~---~KLvLGiP~Y 58 (242)
..++++.+|.||..+-. .....+.....+|-.....++. .||+||+|..
T Consensus 178 ~~~D~i~vqfYn~~~c~-~~~~~~~~~~~~~~~w~~~~~~~~~~kv~lGlpas 229 (280)
T cd02877 178 GLFDFIFVQFYNNPCCS-YASGNASGFNFNWDTWTSWAKATSNAKVFLGLPAS 229 (280)
T ss_pred CccCEEEEEEecCcccc-ccccccchhhhHHHHHHHhcccCCCceEEEecccC
Confidence 37778888888754321 1111111222233111223555 8999999976
No 42
>PTZ00413 lipoate synthase; Provisional
Probab=24.28 E-value=1.3e+02 Score=28.36 Aligned_cols=66 Identities=23% Similarity=0.268 Sum_probs=47.9
Q ss_pred eCCHHHHHHHHHHHHHcCCCeEEEeeCCCCCCCCCCCCCcccccccccccccCcccCcccchhhhhccccCCCceEEEee
Q psy13760 148 YEDPETVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGENDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDLNIILGV 227 (242)
Q Consensus 148 yDd~~Si~~K~~y~~~~gLgGv~vW~l~~Dd~~g~C~~~~~pLl~ai~~~l~~~~~~~~~~~~~~~~k~~~P~~~~~~~~ 227 (242)
.-|++.+..-++-+++.||.=+.+-+.+-||..+ .. -.....-+.++|..+|++++-+++
T Consensus 176 ~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D-------------------~g-a~~~a~~I~~Ir~~~p~~~Ievli 235 (398)
T PTZ00413 176 PLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPD-------------------GG-ASHVARCVELIKESNPELLLEALV 235 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCCh-------------------hh-HHHHHHHHHHHHccCCCCeEEEcC
Confidence 4589999999999999999877777777777422 10 022333455688889999999988
Q ss_pred cCcccC
Q psy13760 228 GGFEDQ 233 (242)
Q Consensus 228 ~g~~~~ 233 (242)
|.+.+.
T Consensus 236 gDf~g~ 241 (398)
T PTZ00413 236 GDFHGD 241 (398)
T ss_pred CccccC
Confidence 877553
No 43
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=22.24 E-value=1.1e+02 Score=27.88 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=29.1
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCeEEEeeCCCC
Q psy13760 144 IWVSYEDPETVGVKAAYAKQNGLAGVAMVDLSLD 177 (242)
Q Consensus 144 ~wisyDd~~Si~~K~~y~~~~gLgGv~vW~l~~D 177 (242)
-+....|+++++..+++|+++|+-|..+|.--++
T Consensus 50 GyYdl~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf~ 83 (345)
T PF14307_consen 50 GYYDLRDPEVMEKQAELAKEYGIDGFCFYHYWFN 83 (345)
T ss_pred CcccCCCHHHHHHHHHHHHHhCCCEEEEEeeecC
Confidence 3433459999999999999999999999988875
Done!