RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13760
(242 letters)
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep
heparin, hormone-growth factor complex; HET: NAG BMA
MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5
d.26.3.1 PDB: 1jne_A*
Length = 420
Score = 138 bits (348), Expect = 1e-38
Identities = 62/153 (40%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPL-KVEGPGEKGPLVQEEGLLSYGEICSQL--AS 105
NK+ L + TYG W + KD+ G+P + + GP +G Q+ GLLSY EIC +L
Sbjct: 270 NKINLGVATYGNAWKLTKDSGLEGVPVVPETSGPAPEGFQSQKPGLLSYAEICGKLSNPQ 329
Query: 106 LTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNG 165
+ + LRRV D KR G A+R + Q+ + GIWVSY+DP++ KAAYA+
Sbjct: 330 NQFLKGNESPLRRVSDPTKRFGGIAYRPVDGQITE--GIWVSYDDPDSASNKAAYARVKN 387
Query: 166 LAGVAMVDLSLDDFKGNCGENDYH-IKSLDKEL 197
L GVA+ DLS DDF+G C + Y ++++ L
Sbjct: 388 LGGVALFDLSYDDFRGQCSGDKYPILRAIKYRL 420
Score = 47.1 bits (112), Expect = 2e-06
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 185 ENDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDLNIILGVGG--FEDQKDKEKYLDL 242
+ S+++ LD K+ + +VT+LK YP L ++L VGG D KY+DL
Sbjct: 45 GENLQAYSMNENLDIYKH----QFSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDL 100
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin,
chitooligosaccharide, pseudochitinase, HY; HET: NAG;
1.95A {Homo sapiens}
Length = 365
Score = 121 bits (306), Expect = 5e-33
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 25/151 (16%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTD 108
K+++ IPTYG ++ + + G P GPG GP+ + G L+Y EIC L
Sbjct: 235 EKVVMGIPTYGHSFTLASAETTVGAP---ASGPGAAGPITESSGFLAYYEICQFLKG--- 288
Query: 109 ANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAG 168
+ R+ D YA + Q WV Y+D +++ K + K L G
Sbjct: 289 -----AKITRLQDQ---QVPYAVK--GNQ-------WVGYDDVKSMETKVQFLKNLNLGG 331
Query: 169 VAMVDLSLDDFKGNCGENDYH--IKSLDKEL 197
+ + +DDF G + ++++ + L
Sbjct: 332 AMIWSIDMDDFTGKSCNQGPYPLVQAVKRSL 362
Score = 36.9 bits (86), Expect = 0.004
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 194 DKELDTDKNKGHELYKQVTALKTSYPDLNIILGVGG 229
+ ++ LY+ + +LKT P L I+L +GG
Sbjct: 43 NNKVIIKDKSEVMLYQTINSLKTKNPKLKILLSIGG 78
>2pi6_A Chitinase-3-like protein 1; complex, signaling protein; HET: NAG
MAN; 1.65A {Ovis aries} SCOP: c.1.8.5 d.26.3.1 PDB:
2dpe_A* 1sr0_A* 1zl1_A* 1zbk_A* 2dsu_A* 2dsv_A* 2dsw_A*
2fdm_A* 2g41_A* 2g8z_A* 2dt1_A* 1zbv_A* 1zu8_A* 2aos_A*
2b31_A* 1zbw_A* 2dt0_A* 2dsz_A* 2dt2_A* 2dt3_A* ...
Length = 361
Score = 118 bits (297), Expect = 1e-31
Identities = 52/152 (34%), Positives = 72/152 (47%), Gaps = 26/152 (17%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTD 108
NKL++ IPT+GR++ + + G P V GPG G +E+G+L+Y EIC L T
Sbjct: 230 NKLVMGIPTFGRSFTLASSKTDVGAP---VSGPGIPGRFTKEKGILAYYEICDFLHGAT- 285
Query: 109 ANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAG 168
R D YA + Q WV+Y+D E+V KA Y K LAG
Sbjct: 286 -------THRFRDQ---QVPYATK--GNQ-------WVAYDDQESVKNKARYLKNRQLAG 326
Query: 169 VAMVDLSLDDFKGN-CGENDYH--IKSLDKEL 197
+ L LDDF+G CG+N ++ L
Sbjct: 327 AMVWALDLDDFRGTFCGQNLTFPLTSAVKDVL 358
Score = 39.6 bits (93), Expect = 5e-04
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 194 DKELDTDKNKGHELYKQVTALKTSYPDLNIILGVGG 229
+ E+DT + LY + LK P L +L VGG
Sbjct: 42 NNEIDTWEWNDVTLYDTLNTLKNRNPKLKTLLSVGG 77
>1vf8_A YM1, secretory protein; chitinase, CHI-lectin, structural
plasticity, functional versatility, immune system; 1.31A
{Mus musculus} SCOP: c.1.8.5 d.26.3.1 PDB: 1e9l_A
Length = 377
Score = 115 bits (291), Expect = 1e-30
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 23/155 (14%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTD 108
KLI+ P YG T+ I D S+TGI G G E GLL+Y E+C+ L
Sbjct: 237 EKLIVGFPAYGHTF-ILSDPSKTGIGA-PTISTGPPGKYTDESGLLAYYEVCTFLNE--- 291
Query: 109 ANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAG 168
V D + YA++ + WV Y++ + +KA + K N L G
Sbjct: 292 ------GATEVWDAPQ-EVPYAYQ--GNE-------WVGYDNVRSFKLKAQWLKDNNLGG 335
Query: 169 VAMVDLSLDDFKGN-CGENDYH-IKSLDKELDTDK 201
+ L +DDF G+ C + + +L +L+
Sbjct: 336 AVVWPLDMDDFSGSFCHQRHFPLTSTLKGDLNIHS 370
Score = 37.3 bits (87), Expect = 0.003
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 194 DKELDTDKNKGHELYKQVTALKTSYPDLNIILGVGG 229
+ E+ + Y+ + LK +L +L +GG
Sbjct: 42 NNEITYTHEQDLRDYEALNGLKDKNTELKTLLAIGG 77
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 115 bits (289), Expect = 4e-30
Identities = 52/151 (34%), Positives = 75/151 (49%), Gaps = 25/151 (16%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTD 108
+KLIL +PTYGR++ +S T G G GP +E G+L+Y E+CS +
Sbjct: 237 SKLILGMPTYGRSF-TLASSSDTR-VGAPATGSGTPGPFTKEGGMLAYYEVCSWKGA--- 291
Query: 109 ANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAG 168
T +R+ D Y FR + Q WV ++D E+ K +Y KQ GL G
Sbjct: 292 ------TKQRIQDQ---KVPYIFR--DNQ-------WVGFDDVESFKTKVSYLKQKGLGG 333
Query: 169 VAMVDLSLDDFKG-NCGENDYH-IKSLDKEL 197
+ L LDDF G +C + Y I++L +EL
Sbjct: 334 AMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 364
Score = 38.5 bits (90), Expect = 0.001
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 194 DKELDTDKNKGHELYKQVTALKTSYPDLNIILGVGGFED 232
+ +L T + LY++ LK P L +L +GG+
Sbjct: 42 NHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLAIGGWNF 80
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure,
crystallography, asthma,inhibitor, chitin degradation,
methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo
sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A*
2ybt_A* 2ybu_A*
Length = 395
Score = 111 bits (279), Expect = 7e-29
Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 24/176 (13%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTD 108
KLI+ PTYG + I + S TGI G G GP +E G+ +Y EIC+ L +
Sbjct: 237 EKLIVGFPTYGHNF-ILSNPSNTGIGA-PTSGAGPAGPYAKESGIWAYYEICTFLKN--- 291
Query: 109 ANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAG 168
+ D + YA++ WV Y++ ++ +KA + K N G
Sbjct: 292 ------GATQGWDAPQ-EVPYAYQ--GNV-------WVGYDNVKSFDIKAQWLKHNKFGG 335
Query: 169 VAMVDLSLDDFKGN-CGENDYH-IKSLDKELDTDKNKGHELYKQVTALKTSYPDLN 222
+ + LDDF G C + + I +L K L + + + T+ P +
Sbjct: 336 AMVWAIDLDDFTGTFCNQGKFPLISTLKKALGLQSASCTAPAQPIEPI-TAAPGSH 390
Score = 35.8 bits (83), Expect = 0.010
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 194 DKELDTDKNKGHELYKQVTALKTSYPDLNIILGVGG 229
+ E+ T + LY+ LK L +L +GG
Sbjct: 42 NNEITTIEWNDVTLYQAFNGLKNKNSQLKTLLAIGG 77
>3alf_A Chitinase, class V; hydrolase; 1.20A {Nicotiana tabacum} PDB:
3alg_A*
Length = 353
Score = 101 bits (253), Expect = 2e-25
Identities = 32/150 (21%), Positives = 51/150 (34%), Gaps = 24/150 (16%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTD 108
KL+L IP YG W + + G G G ++G ++Y I +
Sbjct: 226 KKLVLGIPFYGYAW-RLVNANIHG-LRAPAAGKSNVGA--VDDGSMTYNRIRDYIVE--- 278
Query: 109 ANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAG 168
+ V + +G Y + W+SY+D +TV K Y K GL G
Sbjct: 279 -----SRATTVYNAT-IVGDYCYS--GSN-------WISYDDTQTVRNKVNYVKGRGLLG 323
Query: 169 VAMV-DLSLDDFKGNCGENDYHIKSLDKEL 197
++ D G +E+
Sbjct: 324 -YFAWHVAGDQNWGLSRTASQTWGVSFQEM 352
Score = 32.6 bits (75), Expect = 0.091
Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 13/80 (16%)
Query: 155 GVKAAYAKQNGLAGVAMVDLSLDD-----FKGNCGENDYHIKSLDKELDTDKNKGHELYK 209
VK Y ++ + +D +L F + + + D+ +
Sbjct: 3 NVKGGYWFKDSGLALNNIDSTLFTHLFCAF-ADLNPQLNQLIISPENQDS-------FRQ 54
Query: 210 QVTALKTSYPDLNIILGVGG 229
+ ++ P + L + G
Sbjct: 55 FTSTVQRKNPSVKTFLSIAG 74
>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET:
FLC; 2.01A {Arabidopsis thaliana}
Length = 356
Score = 97.0 bits (242), Expect = 8e-24
Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 30/153 (19%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTD 108
K +L P YG W + + G + +G + YG+I + D
Sbjct: 227 KKAVLGFPYYGYAW-RLTNANSHSY------YAPTTGAAISPDGSIGYGQIRKFIV---D 276
Query: 109 ANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAG 168
A+ V + +G Y + W+ Y+D +++ K YAKQ GL G
Sbjct: 277 NGAT-----TVYN-STVVGDYCYA--GTN-------WIGYDDNQSIVTKVRYAKQRGLLG 321
Query: 169 VAMV-DLSLDDFKG--NCGENDYH-IKSLDKEL 197
+ DD G + + + +
Sbjct: 322 -YFSWHVGADDNSGLSRAASQAWDATTATTRTI 353
Score = 31.9 bits (73), Expect = 0.16
Identities = 5/40 (12%), Positives = 14/40 (35%)
Query: 190 IKSLDKELDTDKNKGHELYKQVTALKTSYPDLNIILGVGG 229
+ S ++ + ++ P + +L +GG
Sbjct: 36 LNSQTNQVTVSSANQPKFSTFTQTVQRRNPSVKTLLSIGG 75
>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, glycosyl hydrolases
family 18; 2.60A {Klebsiella pneumoniae subsp}
Length = 420
Score = 93.7 bits (233), Expect = 2e-22
Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 25/151 (16%)
Query: 49 NKLILAIPTYGRTWVINK---------DTSRTGI-----PPLKVEGPGEKGPLVQEEGLL 94
+++ L I YGR D + P ++ G + ++ +
Sbjct: 270 SQMNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQQIALFASLGYDLSKDTYV 329
Query: 95 SYGEICSQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETV 154
Y +I +L + T + + + + + + +SYE+P +V
Sbjct: 330 KYNDIVGKLLNDPQKRF---TEHWDDEAK---VPWLS---VQSAEGKPLFALSYENPRSV 380
Query: 155 GVKAAYAKQNGLAGVAMV-DLSLDDFKGNCG 184
+KA Y K GLAG AM + DD
Sbjct: 381 AIKADYIKAKGLAG-AMFWEYGADDQNQLAR 410
Score = 35.5 bits (82), Expect = 0.010
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 181 GNCGENDYHIKSLDKELDT-DKNKGHELYKQVTALKTSYPDLNIILGVGG 229
E + +K + K +++ AL+ PDL ++L VGG
Sbjct: 67 DEKDETNAALKDPAHLHEIWLSPKVQADLQKLPALRKQNPDLKVLLSVGG 116
>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A
{Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1
PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A*
1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A*
1ogb_A 1ogg_A* 1e6z_A* 1ur9_A*
Length = 499
Score = 90.3 bits (224), Expect = 4e-21
Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 33/148 (22%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPG--------------EKGPLVQEEGLL 94
K+++ +P YGR + G PG E+ ++ +
Sbjct: 283 AKIVMGVPFYGRAF-KGVSGGNGGQYS-SHSTPGEDPYPSTDYWLVGCEECVRDKDPRIA 340
Query: 95 SYGEICSQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETV 154
SY ++ L R+ + + Y + N +V+Y+D E+
Sbjct: 341 SYRQLEQMLQGNYGYQ-------RLWNDK-TKTPYLYHAQNGL-------FVTYDDAESF 385
Query: 155 GVKAAYAKQNGLAGVAMV-DLSLDDFKG 181
KA Y KQ L G M L D+ G
Sbjct: 386 KYKAKYIKQQQLGG-VMFWHLGQDNRNG 412
Score = 39.5 bits (92), Expect = 7e-04
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 186 NDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDLNIILGVGG 229
N + D + K + ++TALK P L I+ +GG
Sbjct: 55 NSNLECAWDPATNDAKARDV--VNRLTALKAHNPSLRIMFSIGG 96
>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A
{Bacillus circulans} SCOP: c.1.8.5 d.26.3.1
Length = 419
Score = 88.6 bits (220), Expect = 1e-20
Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 21/137 (15%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTD 108
KL+L +P YGR W ++ G G E G + ++ + +
Sbjct: 297 AKLVLGVPFYGRGW---DGCAQAG-NGQYQTCTGGSSVGTWEAGSFDFYDLEANYINKNG 352
Query: 109 ANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAG 168
R + Y + NK+ ++SY+D E+VG K AY K GL G
Sbjct: 353 YT-------RYWNDTA-KVPYLYNASNKR-------FISYDDAESVGYKTAYIKSKGLGG 397
Query: 169 VAMV-DLSLDDFKGNCG 184
AM +LS D K
Sbjct: 398 -AMFWELSGDRNKTLQN 413
Score = 39.7 bits (93), Expect = 6e-04
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 177 DDFKGNCGENDYHIKSLDKELDTDKNKGHE--------LYKQVTALKTSYPDLNIILGVG 228
++ + I D +DT K + Q+ LK + P+L I+ VG
Sbjct: 71 NEKSQTINVPNGTIVLGDPWIDTGKTFAGDTWDQPIAGNINQLNKLKQTNPNLKTIISVG 130
Query: 229 G 229
G
Sbjct: 131 G 131
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase,
hydro hydrolase inhibitor complex; HET: POY; 1.16A
{Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A*
3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A*
3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A*
3as3_A*
Length = 584
Score = 88.4 bits (219), Expect = 2e-20
Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 17/137 (12%)
Query: 49 NKLILAIPTYGRTW--VINKDTSRTGIPPLKV---EGPGEKGPLVQEEGLLSYGEICSQL 103
NKL+L YGR W V + P + G V E+G++ Y I S +
Sbjct: 431 NKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQGVWEDGVIDYKGIKSFM 490
Query: 104 ASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQ 163
+ + + + + + G ++++D +V K YAK
Sbjct: 491 LGANNTGINGFEYGYDAQAE---APWVW-------NRSTGELITFDDHRSVLAKGNYAKS 540
Query: 164 NGLAGVAMV-DLSLDDF 179
GLAG ++ D+
Sbjct: 541 LGLAG-LFSWEIDADNG 556
Score = 38.0 bits (88), Expect = 0.002
Identities = 20/78 (25%), Positives = 26/78 (33%), Gaps = 14/78 (17%)
Query: 164 NGLAGVAMVDLSLDDFKGNCGENDYHIKSLDKELDTDKN------------KGHELYKQV 211
N + G NDY + D K+ KG+ Y +
Sbjct: 178 NESVKSVGGNSFNALQTACRGVNDYEVVIHDPWAAYQKSFPQAGHEYSTPIKGN--YAML 235
Query: 212 TALKTSYPDLNIILGVGG 229
ALK PDL II +GG
Sbjct: 236 MALKQRNPDLKIIPSIGG 253
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 85.0 bits (210), Expect = 3e-19
Identities = 24/159 (15%), Positives = 44/159 (27%), Gaps = 27/159 (16%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGE---------I 99
+ + Y R K+ + T P KG L E I
Sbjct: 402 KAIFIGYAGYTRNA---KNATITTSIPS---EEALKGTYTDANQTLGSFEYSVLEWTDII 455
Query: 100 CSQLASLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAA 159
C + + L + Y + K ++S + P +V K
Sbjct: 456 CHYMDFEKGEGRNGYKLVHDKVAK---ADYLYSEATKV-------FISLDTPRSVRDKGR 505
Query: 160 YAKQNGLAGVAMV-DLSLDDFKGNCGENDYHIKSLDKEL 197
Y K GL G + D+ ++ + + ++
Sbjct: 506 YVKDKGLGG-LFIWSGDQDNGILTNAAHEGLKRRIKNKV 543
Score = 41.1 bits (96), Expect = 2e-04
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 189 HIKSLDKELDTDKNKGHELYKQVTALKTSYPDLNIILGVGG 229
++ D ++ K L L + +L L +GG
Sbjct: 206 KWEAGDANERYNQEKAKGLLGGFRLLHEADKELEFSLSIGG 246
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas
hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria
ochroleuca} PDB: 3g6l_A*
Length = 406
Score = 84.3 bits (209), Expect = 4e-19
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 41/140 (29%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEK----GPLVQEEGLLSYGEICSQLA 104
+K+IL +P YGR + G +GPG+ G E G+ Y + A
Sbjct: 267 SKIILGMPIYGRAF--------VG-----TDGPGKPYSTIGEGSWESGIWDYKVLPKAGA 313
Query: 105 S-LTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQ 163
+ +TD+ A TY++ ++ +SY+ P+ V K +YAK
Sbjct: 314 TVITDSAA--------------GATYSYDSSSRT-------MISYDTPDMVRTKVSYAKG 352
Query: 164 NGLAGVAMV-DLSLDDFKGN 182
GL G +M + S D +
Sbjct: 353 LGLGG-SMFWEASADKTGSD 371
Score = 37.3 bits (87), Expect = 0.003
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 11/55 (20%)
Query: 186 NDYHIKSLDKELDTDK-----------NKGHELYKQVTALKTSYPDLNIILGVGG 229
D + S D D +K + KQ+ LK + L I+L +GG
Sbjct: 59 VDGTVYSGDTYADLEKHYSDDSWNDIGTNAYGCVKQLYKLKKANRSLKIMLSIGG 113
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides
immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A*
1ll6_A
Length = 392
Score = 84.2 bits (209), Expect = 4e-19
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 39/138 (28%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEK----GPLVQEEGLLSYGEICSQLA 104
NK++L +P YGR + +G G G E G+ Y ++ Q A
Sbjct: 249 NKIVLGMPLYGRAF--------AS-----TDGIGTSFNGVGGGSWENGVWDYKDMPQQGA 295
Query: 105 SLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQN 164
+ + D +Y++ NK +SY+ + G KA Y +N
Sbjct: 296 ----------QVTELEDIA---ASYSYD-KNK------RYLISYDTVKIAGKKAEYITKN 335
Query: 165 GLAGVAMV-DLSLDDFKG 181
G+ G M + S D
Sbjct: 336 GMGG-GMWWESSSDKTGN 352
Score = 38.8 bits (91), Expect = 9e-04
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 11/55 (20%)
Query: 186 NDYHIKSLDKELDTDK-----------NKGHELYKQVTALKTSYPDLNIILGVGG 229
+ D DTDK N + KQ+ LK + +L +L +GG
Sbjct: 41 PSGEVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGG 95
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 84.1 bits (208), Expect = 7e-19
Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 21/132 (15%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTD 108
K+++ YGR W + + IP G E G++ Y +I Q S
Sbjct: 412 GKIVVGTAMYGRGW-TGVNGYQNNIP-FTGTATG-PVKGTWENGIVDYRQIAGQFMS--- 465
Query: 109 ANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAG 168
+ Y F+ ++++D +V K Y L G
Sbjct: 466 ---GEWQYTYDATAE---APYVFKPSTGD-------LITFDDARSVQAKGKYVLDKQLGG 512
Query: 169 VAMV-DLSLDDF 179
++ D+
Sbjct: 513 -LFSWEIDADNG 523
Score = 39.8 bits (93), Expect = 6e-04
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 180 KGNCGENDYHIKSLDKELDTDKN---------KGHELYKQVTALKTSYPDLNIILGVGG 229
+ G D+ + D K + Q+ ALK ++PDL I+ +GG
Sbjct: 193 RSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGG 251
>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP:
c.1.8.5 d.26.3.1
Length = 435
Score = 83.3 bits (206), Expect = 9e-19
Identities = 30/138 (21%), Positives = 41/138 (29%), Gaps = 34/138 (24%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEK-GPLVQEEGLLSYGEICSQLASLT 107
+L L + YGR W TG + GP P E Y ++ +
Sbjct: 310 KQLGLGLAAYGRGW--------TGAKNVSPWGPATDGAPGTYETANEDYDKLKTLGTDHY 361
Query: 108 DANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLA 167
DA + + Q W SY++ T K Y GL
Sbjct: 362 DAAT--------------GSAWRYD--GTQ-------WWSYDNIATTKQKTDYIVSKGLG 398
Query: 168 GVAMV-DLSLDDFKGNCG 184
G M +LS D G
Sbjct: 399 G-GMWWELSGDRNGELVG 415
Score = 35.9 bits (83), Expect = 0.008
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 191 KSLDKELDTDKNKGHELYKQVTALKTSYPDLNIILGVGG 229
KS+ + DT + Q+ LK P L +++ +GG
Sbjct: 88 KSVSGKADTWDQPLAGSFNQLKQLKAKNPKLKVMISLGG 126
>1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase,
hydrolase; 1.7A {Aspergillus fumigatus} SCOP: c.1.8.5
d.26.3.1 PDB: 1w9u_A* 1w9v_A* 2a3a_A* 2a3b_A* 2a3c_A*
2a3e_A* 2iuz_A* 3ch9_A 3chc_A* 3chd_A* 3che_A* 3chf_A*
1wno_A*
Length = 433
Score = 83.2 bits (206), Expect = 1e-18
Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEK----GPLVQEEGLLSYGEICSQLA 104
NK++L +P YGR++ +GPG+ G E G+ Y + A
Sbjct: 290 NKIVLGMPLYGRSF--------AN-----TDGPGKPYNGVGQGSWENGVWDYKALPQAGA 336
Query: 105 SLTDANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQN 164
+ M +Y++ NK +SY++P+ +K+ Y K
Sbjct: 337 T------------EHVLPDI-MASYSYDATNKF-------LISYDNPQVANLKSGYIKSL 376
Query: 165 GLAGVAMV-DLSLDDFKGN 182
GL G AM D S D +
Sbjct: 377 GLGG-AMWWDSSSDKTGSD 394
Score = 42.0 bits (99), Expect = 1e-04
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 11/60 (18%)
Query: 181 GNCGENDYHIKSLDKELDTDK-----------NKGHELYKQVTALKTSYPDLNIILGVGG 229
N + D D +K N + KQ+ LK +L ++L +GG
Sbjct: 77 ANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGG 136
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron}
PDB: 3co4_A
Length = 312
Score = 75.4 bits (186), Expect = 3e-16
Identities = 26/159 (16%), Positives = 44/159 (27%), Gaps = 53/159 (33%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTD 108
+K++ +P YG +W ++G + + Y I L
Sbjct: 204 SKIVGGLPFYGYSW------------EESLQGAVDDVRGI------RYSGILKHL----- 240
Query: 109 ANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAG 168
G A N Y T+ K + K+N AG
Sbjct: 241 ------------------GNEAADKDNIG-------KTYYNGRPTIANKCKFIKENDYAG 275
Query: 169 VAMV-DLSLDDFKGNCGENDYHIKSLDKEL-DTDKNKGH 205
M+ L D N I + +E+ + + H
Sbjct: 276 -VMIWQLFQDAHNDNYDLKL--INVVGREMMEEGHHHHH 311
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural
genomics, uncharacterized protein, protein struct
initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Length = 319
Score = 68.2 bits (167), Expect = 1e-13
Identities = 20/135 (14%), Positives = 39/135 (28%), Gaps = 32/135 (23%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTD 108
K+I+ +P YG W+I PG + + I
Sbjct: 215 RKIIIGVPLYGYDWIIPY-------------QPGTVA-----SAISNQNAIE----RAMR 252
Query: 109 ANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAG 168
A ++ + Q Y +Q V +E ++ K ++ L
Sbjct: 253 YQA---PIQYSAEYQSPFFRY-------SDQQGRTHEVWFEGVRSMSRKMQIVREYRLQA 302
Query: 169 VAMVDLSLDDFKGNC 183
+ L+L + +
Sbjct: 303 IGAWQLTLAEGHHHH 317
>3bxw_B Chitinase domain-containing protein 1; TIM barrel, lysosome,
secreted, hydrolase; 2.70A {Homo sapiens}
Length = 393
Score = 49.7 bits (118), Expect = 3e-07
Identities = 20/133 (15%), Positives = 43/133 (32%), Gaps = 38/133 (28%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTD 108
+K++L + YG + +KD + + +L D
Sbjct: 293 SKILLGLNFYGMDYATSKDAREPVVG-------------------------ARYIQTLKD 327
Query: 109 ANASPTTLRRVPDTQKRMGTYAFRLPNKQLKQEYGIWVSYEDPETVGVKAAYAKQNGLAG 168
D+Q + ++ V Y +++ V+ A++ G+ G
Sbjct: 328 HRPRMVW-----DSQASEHFFEYKKSRSGRH-----VVFYPTLKSLQVRLELARELGV-G 376
Query: 169 VAM--VDLSLDDF 179
V++ + LD F
Sbjct: 377 VSIWELGQGLDYF 389
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 4e-04
Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 40/144 (27%)
Query: 57 TYGRTWVINKDTSRTGIPPLKVEGPGEKGPLVQEEGLLSYGEICSQLASLTDANASPTTL 116
TYG + I D L + GEKG ++E Y + + T + T
Sbjct: 1656 TYG--FSI-LDIVINNPVNLTIHFGGEKGKRIREN----YSAMIFE----TIVDGKLKTE 1704
Query: 117 RRVPDTQKRMGTYAFRLPNKQLKQ-----------EYGIWVSYEDPETVGVK---AAYAK 162
+ + + +Y FR L E + ED ++ G+ A +A
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF---EDLKSKGLIPADATFA- 1760
Query: 163 QNG--------LAGVAMVDLSLDD 178
G LA +A V +S++
Sbjct: 1761 --GHSLGEYAALASLADV-MSIES 1781
Score = 28.5 bits (63), Expect = 2.5
Identities = 41/281 (14%), Positives = 77/281 (27%), Gaps = 96/281 (34%)
Query: 3 VSGVIASVLVVMVVSARQILASEDSLATRPPKVICHYTDIAFVGKVNKLI-----LAIPT 57
+G ++ + ++ S +S K I + F I A P
Sbjct: 270 ATGHSQGLVTAVAIAETD---SWESFFVSVRKAI----TVLF------FIGVRCYEAYPN 316
Query: 58 YGRTWVINKDTSRT--GIP-P-LKVEGPGEKGPLVQEEGLLSYGEICSQLA-------SL 106
I +D+ G+P P L + Q + ++ + S L SL
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNL----TQEQVQDYVN--KTNSHLPAGKQVEISL 370
Query: 107 TDANA--------SPTTLR------------------RVPDTQ-KRMGTYAFRLPNKQLK 139
N P +L R+P ++ K + F LP
Sbjct: 371 V--NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-LP----- 422
Query: 140 QEYGIWV----SYEDPETVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGENDYHIKSLDK 195
+ P + + K N D+ + + G + ++ L
Sbjct: 423 ----VASPFHSHLLVPASDLINKDLVKNNVSFNAK--DIQIPVYDTFDGSD---LRVLSG 473
Query: 196 ELDTDKNKGHELYKQVTALK------TSYPDLNII-LGVGG 229
+ + + L T + +I+ G GG
Sbjct: 474 SIS------ERIVDCIIRLPVKWETTTQFKATHILDFGPGG 508
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM
barrel, chitin binding, glyco hydrolase, hydrolase;
2.10A {Crocus vernus}
Length = 275
Score = 38.3 bits (89), Expect = 0.001
Identities = 8/45 (17%), Positives = 22/45 (48%)
Query: 185 ENDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDLNIILGVGG 229
S + + + + Q++A+K+S+P++ + + +GG
Sbjct: 40 TASSPHTSTNGKFNVFWDSSILGPDQISAIKSSHPNVRVAVSLGG 84
Score = 31.7 bits (72), Expect = 0.19
Identities = 3/25 (12%), Positives = 6/25 (24%)
Query: 49 NKLILAIPTYGRTWVINKDTSRTGI 73
L + + + GI
Sbjct: 226 GGLPVDKGFFDAATSLKNKGKLHGI 250
>3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A
{Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A*
3n18_A* 3n1a_A*
Length = 333
Score = 31.9 bits (72), Expect = 0.17
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 145 WVSYEDPETVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGENDY--HIKSLDKE 196
V + + ++ Y G+ ++ D N+Y + L +
Sbjct: 282 GVPFGGKYKLSNQSGY---PAFRGLMSWSINWDAKNNFEFSNNYRTYFDGLSLQ 332
>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} SCOP:
c.1.8.5
Length = 290
Score = 30.1 bits (67), Expect = 0.58
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 208 YKQVTALKTSYPDLNIILGVGG 229
++V LK +P++ +++ +GG
Sbjct: 65 PEKVKNLKRRHPEVKVVISIGG 86
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN;
1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Length = 350
Score = 28.0 bits (63), Expect = 2.7
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 208 YKQVTALKTSYPDLNIIL--GVGGFEDQKDKEKYLD 241
+ V LK +P L + G+ E+ K +D
Sbjct: 185 HDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLKRVD 220
>3d02_A Putative LACI-type transcriptional regulator; periplasmic
sugar-binding protein, structura genomics; HET: MSE GOL;
1.30A {Klebsiella pneumoniae subsp}
Length = 303
Score = 27.4 bits (61), Expect = 4.9
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
Query: 152 ETVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGENDYHIKSLDKELDT--DKNKGHELYK 209
+ +G K Y G V +L D E+ + + + + + +
Sbjct: 122 KRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDMHEVTRRMPVAESVDDS---RR 178
Query: 210 QVTALKTSYPDLNIILG 226
L +YPDL ++
Sbjct: 179 TTLDLMKTYPDLKAVVS 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.389
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,628,296
Number of extensions: 215319
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 51
Length of query: 242
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,160,982
Effective search space: 628308282
Effective search space used: 628308282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.3 bits)