BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13761
(402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B49|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase, Non-Receptor Type 3
Length = 287
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 281 FNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKT---HAISQLEKA 337
+ DV L Y+ ++V+++G NED++ A + +E VNKY A + H +Q +
Sbjct: 50 YKDV-LPYDTTRVLLQG---NEDYINASYVNMEIPAANLVNKYIATQGPLPHTCAQFWQV 105
Query: 338 NQD 340
D
Sbjct: 106 VWD 108
>pdb|4EZE|A Chain A, Crystal Structure Of Had Family Hydrolase T0658 From
Salmonella Enterica Subsp. Enterica Serovar Typhi
(Target Efi-501419)
pdb|4EZE|B Chain B, Crystal Structure Of Had Family Hydrolase T0658 From
Salmonella Enterica Subsp. Enterica Serovar Typhi
(Target Efi-501419)
Length = 317
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 113 ECKAPISESELRKQSLYVQFDPFLK-SPVRQKPSIKSPPTQSIMEEESLNDSAKLLGTS 170
EC P LR+ SL QFD F+K P+ I + + EE +++ A+ LG S
Sbjct: 77 ECLTPEFYRYLRELSLQWQFDFFIKPQPLPANGIIAFDMDSTFIAEEGVDEIARELGMS 135
>pdb|2YL5|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 294 IIEGMKA----NEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDL---RNK 346
I E M A N+D+ RA ++ L EEL K + ++ L+ A L+ RNK
Sbjct: 342 IFELMTAFADHNKDYFRANYNALREELAKIPTNLEGYSKESLEALDAAKTALNYNLNRNK 401
Query: 347 TYEMET--TKLKAMLKKSEMQIT 367
E++T LKA L+ + +T
Sbjct: 402 QAELDTLVANLKAALQGLKPAVT 424
>pdb|2YLA|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 294 IIEGMKA----NEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDL---RNK 346
I E M A N+D+ RA ++ L EEL K + ++ L+ A L+ RNK
Sbjct: 342 IFELMTAFADHNKDYFRANYNALREELAKIPTNLEGYSKESLEALDAAKTALNYNLNRNK 401
Query: 347 TYEMET--TKLKAMLKKSEMQIT 367
E++T LKA L+ + +T
Sbjct: 402 QAELDTLVANLKAALQGLKPAVT 424
>pdb|2YL9|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 457
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 294 IIEGMKA----NEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDL---RNK 346
I E M A N+D+ RA ++ L EEL K + ++ L+ A L+ RNK
Sbjct: 359 IFELMTAFADHNKDYFRANYNALREELAKIPTNLEGYSKESLEALDAAKTALNYNLNRNK 418
Query: 347 TYEMET--TKLKAMLKKSEMQIT 367
E++T LKA L+ + +T
Sbjct: 419 QAELDTLVANLKAALQGLKPAVT 441
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 287 KYERSKVI-----IEGMKANEDHLRARHSELEEELKKQVN 321
+YE S + + GM N+ H+ R +++EE K+ VN
Sbjct: 365 RYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVN 404
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.306 0.123 0.327
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,243,973
Number of Sequences: 62578
Number of extensions: 304151
Number of successful extensions: 772
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 45
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (24.6 bits)