Query psy13761
Match_columns 402
No_of_seqs 97 out of 115
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 19:49:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05010 TACC: Transforming ac 100.0 8.3E-59 1.8E-63 430.4 26.5 182 215-396 26-207 (207)
2 KOG0980|consensus 97.9 0.011 2.4E-07 66.1 27.4 164 204-367 318-518 (980)
3 PF07888 CALCOCO1: Calcium bin 97.4 0.14 3.1E-06 55.0 26.5 49 346-394 279-327 (546)
4 PF05010 TACC: Transforming ac 97.3 0.15 3.3E-06 48.6 26.0 178 210-392 1-196 (207)
5 TIGR02168 SMC_prok_B chromosom 97.2 0.18 4E-06 54.8 25.8 22 270-291 724-745 (1179)
6 TIGR02169 SMC_prok_A chromosom 97.1 0.32 7E-06 53.4 26.1 19 222-240 677-695 (1164)
7 PRK04778 septation ring format 97.1 0.081 1.7E-06 56.1 20.7 180 216-395 290-500 (569)
8 PRK02224 chromosome segregatio 97.1 0.41 8.8E-06 52.3 26.1 37 283-319 603-639 (880)
9 PF00038 Filament: Intermediat 97.0 0.11 2.5E-06 49.8 19.6 127 223-360 22-152 (312)
10 PRK09039 hypothetical protein; 97.0 0.18 3.8E-06 50.8 21.5 135 242-394 65-203 (343)
11 PHA02562 46 endonuclease subun 96.9 0.59 1.3E-05 48.1 24.3 63 222-284 184-246 (562)
12 PRK02224 chromosome segregatio 96.8 0.66 1.4E-05 50.7 25.4 80 307-387 321-400 (880)
13 PRK03918 chromosome segregatio 96.8 0.42 9E-06 51.9 23.6 33 295-327 621-653 (880)
14 PRK03918 chromosome segregatio 96.8 1.1 2.3E-05 48.8 26.8 35 272-306 238-272 (880)
15 PRK11637 AmiB activator; Provi 96.8 0.76 1.6E-05 46.8 26.2 39 252-290 97-135 (428)
16 PHA02562 46 endonuclease subun 96.7 0.52 1.1E-05 48.5 22.5 27 217-243 186-212 (562)
17 COG1196 Smc Chromosome segrega 96.6 1 2.2E-05 51.7 25.5 46 350-395 807-852 (1163)
18 PF08317 Spc7: Spc7 kinetochor 96.5 1.1 2.3E-05 44.6 23.5 25 219-243 75-99 (325)
19 COG1196 Smc Chromosome segrega 96.3 2.8 6E-05 48.3 26.7 32 296-327 817-848 (1163)
20 KOG0161|consensus 96.2 1.9 4.2E-05 52.5 26.0 170 223-393 1351-1541(1930)
21 PRK04863 mukB cell division pr 96.2 2.2 4.9E-05 50.8 26.1 168 219-387 300-486 (1486)
22 KOG0996|consensus 96.2 0.75 1.6E-05 53.5 21.5 171 217-396 790-967 (1293)
23 KOG0250|consensus 96.2 1.2 2.5E-05 51.5 22.7 171 226-396 288-475 (1074)
24 PF13851 GAS: Growth-arrest sp 96.1 1.3 2.9E-05 41.6 24.1 145 220-386 28-172 (201)
25 KOG0161|consensus 96.0 2.4 5.1E-05 51.9 25.1 144 252-396 1316-1460(1930)
26 PF09726 Macoilin: Transmembra 95.8 2.4 5.1E-05 47.0 22.7 153 217-373 423-610 (697)
27 TIGR00606 rad50 rad50. This fa 95.8 3.2 7E-05 48.3 24.7 69 280-348 882-950 (1311)
28 PF07888 CALCOCO1: Calcium bin 95.8 2.3 5E-05 46.1 21.9 93 216-319 140-232 (546)
29 PF06160 EzrA: Septation ring 95.7 3.6 7.8E-05 44.0 23.1 169 227-395 307-496 (560)
30 PF05667 DUF812: Protein of un 95.7 1.7 3.7E-05 47.3 20.7 118 260-385 358-475 (594)
31 TIGR01005 eps_transp_fam exopo 95.6 1.4 3.1E-05 47.7 19.9 102 294-395 289-400 (754)
32 PF00038 Filament: Intermediat 95.6 2.4 5.2E-05 40.8 22.8 53 334-386 239-291 (312)
33 PF12128 DUF3584: Protein of u 95.5 6.6 0.00014 45.6 25.8 128 256-383 304-454 (1201)
34 PF10174 Cast: RIM-binding pro 95.4 4.1 9E-05 45.8 22.8 147 233-379 440-598 (775)
35 KOG0995|consensus 95.4 5.4 0.00012 43.7 24.1 84 309-392 462-546 (581)
36 COG1579 Zn-ribbon protein, pos 95.3 3.3 7.1E-05 40.7 20.4 45 257-301 88-132 (239)
37 TIGR01843 type_I_hlyD type I s 95.3 3.3 7.1E-05 40.6 21.2 35 259-293 152-186 (423)
38 PF15397 DUF4618: Domain of un 95.2 2.7 6E-05 41.7 18.7 127 263-396 18-156 (258)
39 PF13851 GAS: Growth-arrest sp 95.2 2.8 6.1E-05 39.5 23.1 35 217-251 32-66 (201)
40 PF00261 Tropomyosin: Tropomyo 95.1 3.1 6.7E-05 39.6 20.8 112 263-382 97-208 (237)
41 KOG1029|consensus 95.1 2.2 4.7E-05 48.4 19.1 135 242-380 418-558 (1118)
42 TIGR00606 rad50 rad50. This fa 95.0 5.1 0.00011 46.7 22.9 45 351-395 334-378 (1311)
43 KOG0996|consensus 95.0 4.1 8.8E-05 47.8 21.5 34 255-288 437-470 (1293)
44 KOG1029|consensus 94.7 9 0.0002 43.8 22.7 154 219-395 320-489 (1118)
45 PRK01156 chromosome segregatio 94.7 8.8 0.00019 42.5 24.8 23 305-327 641-663 (895)
46 KOG0250|consensus 94.6 12 0.00026 43.7 25.4 142 235-376 276-427 (1074)
47 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.5 3.1 6.7E-05 36.4 16.8 101 291-391 15-118 (132)
48 PF10168 Nup88: Nuclear pore c 94.4 2.6 5.7E-05 46.7 18.0 17 368-384 689-705 (717)
49 PF12128 DUF3584: Protein of u 94.4 5.1 0.00011 46.4 20.9 63 331-393 691-754 (1201)
50 PF08317 Spc7: Spc7 kinetochor 94.4 2.5 5.4E-05 42.0 16.2 37 352-388 232-268 (325)
51 PF10174 Cast: RIM-binding pro 94.2 12 0.00026 42.3 23.0 107 273-379 372-494 (775)
52 KOG4643|consensus 94.2 15 0.00031 43.0 23.9 167 216-390 412-587 (1195)
53 TIGR02680 conserved hypothetic 94.1 8.6 0.00019 45.4 22.2 34 215-248 233-266 (1353)
54 KOG0018|consensus 94.1 5.4 0.00012 46.4 19.8 99 282-388 803-901 (1141)
55 KOG4674|consensus 93.9 10 0.00022 46.4 22.3 122 260-395 138-262 (1822)
56 KOG4674|consensus 93.9 13 0.00028 45.6 23.1 119 271-393 376-504 (1822)
57 KOG0964|consensus 93.5 19 0.00042 42.0 22.9 128 257-384 348-501 (1200)
58 PRK11637 AmiB activator; Provi 93.4 10 0.00023 38.8 27.1 31 258-288 96-126 (428)
59 PF10168 Nup88: Nuclear pore c 93.2 3.7 7.9E-05 45.7 16.3 16 380-395 694-709 (717)
60 PRK01156 chromosome segregatio 93.1 17 0.00037 40.3 25.0 33 357-389 416-448 (895)
61 PF04111 APG6: Autophagy prote 93.1 2.4 5.2E-05 42.4 13.5 87 256-346 48-134 (314)
62 PF11559 ADIP: Afadin- and alp 93.0 6 0.00013 34.9 15.9 45 330-374 106-150 (151)
63 KOG0994|consensus 92.9 21 0.00045 42.6 21.9 104 258-361 1598-1711(1758)
64 PF05667 DUF812: Protein of un 92.7 14 0.0003 40.6 19.5 117 217-344 333-449 (594)
65 PF09731 Mitofilin: Mitochondr 92.6 16 0.00034 38.7 23.0 60 338-398 366-425 (582)
66 smart00787 Spc7 Spc7 kinetocho 92.5 13 0.00028 37.5 23.6 23 221-243 72-94 (312)
67 TIGR01843 type_I_hlyD type I s 92.5 12 0.00025 36.8 20.8 15 267-281 146-160 (423)
68 PF15619 Lebercilin: Ciliary p 92.2 10 0.00023 35.8 23.3 54 332-385 132-185 (194)
69 PF09789 DUF2353: Uncharacteri 92.2 15 0.00033 37.6 18.2 158 215-374 26-213 (319)
70 PF08614 ATG16: Autophagy prot 92.1 0.37 8.1E-06 44.4 6.1 113 276-391 14-154 (194)
71 KOG0933|consensus 92.1 30 0.00065 40.6 25.8 136 258-395 715-860 (1174)
72 PF15254 CCDC14: Coiled-coil d 91.6 25 0.00055 40.1 20.1 154 226-394 394-552 (861)
73 PF10211 Ax_dynein_light: Axon 91.6 12 0.00026 35.0 15.8 62 304-365 124-185 (189)
74 PF15066 CAGE1: Cancer-associa 91.2 25 0.00055 38.1 22.2 143 217-365 343-507 (527)
75 PF01576 Myosin_tail_1: Myosin 90.9 0.067 1.5E-06 59.6 0.0 138 257-394 207-358 (859)
76 PF09726 Macoilin: Transmembra 90.6 33 0.00072 38.4 21.2 59 254-319 456-514 (697)
77 PF00261 Tropomyosin: Tropomyo 90.4 17 0.00036 34.7 24.1 40 355-394 195-234 (237)
78 KOG0804|consensus 90.4 26 0.00056 37.8 18.1 78 187-279 296-375 (493)
79 KOG4673|consensus 90.3 18 0.00039 41.0 17.4 89 300-396 395-502 (961)
80 KOG0612|consensus 90.1 40 0.00087 40.2 20.6 41 257-299 643-683 (1317)
81 COG1579 Zn-ribbon protein, pos 90.1 21 0.00045 35.3 21.1 15 380-394 158-172 (239)
82 PRK04778 septation ring format 90.0 30 0.00066 37.1 21.9 60 256-315 280-339 (569)
83 PF09728 Taxilin: Myosin-like 90.0 23 0.0005 35.6 24.8 24 367-390 282-305 (309)
84 cd07657 F-BAR_Fes_Fer The F-BA 89.9 19 0.00042 34.7 22.3 131 217-347 67-201 (237)
85 KOG4673|consensus 89.8 42 0.0009 38.3 21.2 66 255-320 413-480 (961)
86 PRK09039 hypothetical protein; 89.6 25 0.00055 35.6 18.6 90 264-353 115-204 (343)
87 PF15272 BBP1_C: Spindle pole 89.4 21 0.00046 34.4 20.8 96 268-374 51-149 (196)
88 KOG0977|consensus 89.2 38 0.00083 37.1 19.0 121 237-361 110-233 (546)
89 smart00787 Spc7 Spc7 kinetocho 89.2 27 0.00059 35.3 23.4 29 204-233 63-91 (312)
90 KOG0243|consensus 88.9 55 0.0012 38.5 21.3 110 257-366 482-605 (1041)
91 PF10146 zf-C4H2: Zinc finger- 88.8 21 0.00045 34.8 15.0 23 262-284 50-72 (230)
92 PF12718 Tropomyosin_1: Tropom 88.7 18 0.00038 32.6 19.4 84 256-347 33-116 (143)
93 COG0419 SbcC ATPase involved i 88.7 47 0.001 37.5 24.4 60 260-319 310-369 (908)
94 PF10186 Atg14: UV radiation r 88.5 22 0.00047 33.4 19.6 27 221-247 22-48 (302)
95 PF03962 Mnd1: Mnd1 family; I 88.4 19 0.00042 33.7 14.1 125 203-342 42-177 (188)
96 TIGR03017 EpsF chain length de 88.4 30 0.00066 34.9 18.0 23 372-394 343-365 (444)
97 KOG0243|consensus 88.3 54 0.0012 38.6 19.9 119 260-382 443-564 (1041)
98 PF04849 HAP1_N: HAP1 N-termin 88.0 34 0.00074 35.0 18.8 100 289-388 163-265 (306)
99 PF04012 PspA_IM30: PspA/IM30 87.9 23 0.00049 32.9 15.6 46 239-284 25-70 (221)
100 PF06548 Kinesin-related: Kine 87.9 15 0.00034 39.4 14.4 122 108-239 10-139 (488)
101 PF08614 ATG16: Autophagy prot 87.7 6.9 0.00015 36.1 10.6 21 365-385 159-179 (194)
102 PF05911 DUF869: Plant protein 87.5 58 0.0012 37.1 21.2 92 301-396 618-712 (769)
103 KOG0804|consensus 87.5 35 0.00076 36.9 16.7 109 289-401 350-458 (493)
104 PF04012 PspA_IM30: PspA/IM30 87.3 25 0.00053 32.6 19.6 51 292-344 104-154 (221)
105 KOG0612|consensus 87.1 76 0.0016 38.1 21.1 27 325-351 667-693 (1317)
106 cd07654 F-BAR_FCHSD The F-BAR 86.9 34 0.00073 33.8 17.5 79 216-294 71-157 (264)
107 smart00502 BBC B-Box C-termina 86.7 15 0.00033 29.7 14.0 11 382-392 109-119 (127)
108 cd07627 BAR_Vps5p The Bin/Amph 86.5 29 0.00062 32.6 18.0 89 226-332 84-175 (216)
109 PF14662 CCDC155: Coiled-coil 86.4 33 0.00071 33.2 18.8 40 215-254 11-50 (193)
110 PF04111 APG6: Autophagy prote 86.3 17 0.00037 36.4 13.2 117 258-383 16-132 (314)
111 KOG0994|consensus 86.3 86 0.0019 37.9 23.2 117 259-383 1627-1743(1758)
112 PRK04863 mukB cell division pr 86.1 90 0.002 38.0 27.1 46 351-396 443-488 (1486)
113 PRK10884 SH3 domain-containing 85.8 13 0.00027 35.6 11.5 64 305-372 98-161 (206)
114 PF05701 WEMBL: Weak chloropla 85.6 55 0.0012 35.0 24.0 86 257-346 171-256 (522)
115 COG4026 Uncharacterized protei 85.5 26 0.00056 35.1 13.6 97 266-370 113-211 (290)
116 PF05483 SCP-1: Synaptonemal c 85.5 72 0.0016 36.3 23.9 163 217-386 427-616 (786)
117 KOG3850|consensus 85.3 28 0.00061 37.1 14.5 75 305-395 290-366 (455)
118 COG1842 PspA Phage shock prote 85.3 38 0.00082 32.9 18.5 41 258-298 31-71 (225)
119 PF09403 FadA: Adhesion protei 85.3 23 0.00049 31.9 12.1 63 303-367 55-117 (126)
120 PRK05759 F0F1 ATP synthase sub 85.2 24 0.00051 30.9 12.1 22 334-355 91-112 (156)
121 TIGR02977 phageshock_pspA phag 85.2 34 0.00074 32.3 18.8 48 346-393 95-142 (219)
122 PF10267 Tmemb_cc2: Predicted 84.9 32 0.0007 36.1 14.8 76 306-395 243-318 (395)
123 PF07445 priB_priC: Primosomal 84.6 34 0.00073 31.7 13.4 62 314-378 112-173 (173)
124 PF09787 Golgin_A5: Golgin sub 84.6 60 0.0013 34.5 19.9 65 217-281 219-297 (511)
125 PRK13454 F0F1 ATP synthase sub 84.5 33 0.00072 31.6 15.6 16 383-398 151-166 (181)
126 TIGR03185 DNA_S_dndD DNA sulfu 84.3 67 0.0014 34.9 25.2 38 350-387 428-465 (650)
127 PF05700 BCAS2: Breast carcino 84.0 40 0.00086 32.1 17.6 70 321-390 146-215 (221)
128 PF05529 Bap31: B-cell recepto 84.0 9.7 0.00021 34.8 9.5 70 311-380 122-191 (192)
129 TIGR02680 conserved hypothetic 84.0 1E+02 0.0022 36.8 24.7 91 304-395 848-945 (1353)
130 TIGR03185 DNA_S_dndD DNA sulfu 84.0 69 0.0015 34.8 18.3 15 260-274 400-414 (650)
131 PF15619 Lebercilin: Ciliary p 83.9 40 0.00086 32.0 23.0 159 215-378 22-192 (194)
132 PF01576 Myosin_tail_1: Myosin 83.9 0.33 7.2E-06 54.3 0.0 181 215-396 204-402 (859)
133 KOG2077|consensus 83.6 31 0.00067 38.6 14.4 115 257-371 300-434 (832)
134 PF05483 SCP-1: Synaptonemal c 83.6 87 0.0019 35.7 22.5 127 256-386 532-658 (786)
135 PF15070 GOLGA2L5: Putative go 83.6 78 0.0017 35.1 24.4 32 258-289 153-184 (617)
136 PF10481 CENP-F_N: Cenp-F N-te 83.3 56 0.0012 33.5 15.1 63 251-320 18-80 (307)
137 PF10498 IFT57: Intra-flagella 83.2 60 0.0013 33.6 15.8 102 214-333 215-320 (359)
138 PRK06231 F0F1 ATP synthase sub 83.0 43 0.00092 31.7 16.1 15 384-398 190-204 (205)
139 KOG0946|consensus 82.8 1E+02 0.0022 35.9 21.0 91 222-312 653-746 (970)
140 PF10146 zf-C4H2: Zinc finger- 82.5 51 0.0011 32.2 15.4 71 230-301 5-75 (230)
141 TIGR01069 mutS2 MutS2 family p 82.5 40 0.00086 37.9 15.2 82 277-361 509-590 (771)
142 PRK10698 phage shock protein P 82.3 48 0.001 31.8 21.3 52 277-328 97-148 (222)
143 PRK00409 recombination and DNA 82.3 57 0.0012 36.7 16.3 55 307-361 541-595 (782)
144 KOG4438|consensus 82.0 79 0.0017 34.0 18.9 52 259-310 188-240 (446)
145 PF10224 DUF2205: Predicted co 81.9 13 0.00028 31.2 8.5 50 265-314 16-65 (80)
146 KOG0980|consensus 81.8 1.1E+02 0.0024 35.7 21.8 91 258-348 459-549 (980)
147 PRK07352 F0F1 ATP synthase sub 81.7 40 0.00087 30.5 16.0 13 384-396 161-173 (174)
148 PRK10884 SH3 domain-containing 81.5 25 0.00055 33.6 11.6 17 268-284 96-112 (206)
149 TIGR02977 phageshock_pspA phag 81.5 48 0.001 31.3 21.2 53 276-328 96-148 (219)
150 KOG0244|consensus 81.4 1.1E+02 0.0024 35.7 18.0 157 225-385 494-667 (913)
151 PF05557 MAD: Mitotic checkpoi 81.3 0.47 1E-05 51.6 0.0 31 314-344 128-158 (722)
152 KOG0964|consensus 81.3 1.2E+02 0.0027 35.9 20.7 126 216-347 675-800 (1200)
153 KOG0933|consensus 81.2 1.3E+02 0.0027 35.8 24.2 28 365-392 907-934 (1174)
154 TIGR02971 heterocyst_DevB ABC 80.9 56 0.0012 31.6 18.4 83 258-344 90-172 (327)
155 PF05701 WEMBL: Weak chloropla 80.8 85 0.0018 33.6 25.5 8 236-243 123-130 (522)
156 PF11932 DUF3450: Protein of u 80.6 35 0.00075 32.6 12.2 42 354-395 74-115 (251)
157 KOG3156|consensus 80.6 48 0.001 32.7 13.1 70 227-300 67-137 (220)
158 KOG4807|consensus 80.4 91 0.002 33.7 16.8 36 236-274 344-379 (593)
159 KOG0971|consensus 80.1 1.3E+02 0.0029 35.5 27.3 91 303-393 328-425 (1243)
160 COG3206 GumC Uncharacterized p 79.9 78 0.0017 32.7 19.6 104 257-360 245-352 (458)
161 PF15272 BBP1_C: Spindle pole 79.8 61 0.0013 31.3 14.2 40 283-330 41-81 (196)
162 COG0419 SbcC ATPase involved i 79.6 1.2E+02 0.0025 34.5 25.6 13 228-240 241-253 (908)
163 PF11559 ADIP: Afadin- and alp 79.5 44 0.00094 29.5 16.3 69 258-329 80-148 (151)
164 PF08702 Fib_alpha: Fibrinogen 79.3 50 0.0011 30.0 15.0 42 339-380 93-134 (146)
165 PRK14472 F0F1 ATP synthase sub 78.7 51 0.0011 29.9 16.7 14 383-396 159-172 (175)
166 KOG4643|consensus 78.7 1.5E+02 0.0033 35.3 20.2 66 237-303 395-460 (1195)
167 KOG0963|consensus 78.4 1.2E+02 0.0026 34.0 22.8 75 227-301 146-225 (629)
168 PF05384 DegS: Sensor protein 78.1 59 0.0013 30.2 17.2 121 272-396 6-133 (159)
169 PF14662 CCDC155: Coiled-coil 78.0 69 0.0015 31.0 22.9 18 216-233 5-22 (193)
170 PRK09174 F0F1 ATP synthase sub 77.9 65 0.0014 30.6 15.3 33 230-262 77-109 (204)
171 PF09728 Taxilin: Myosin-like 77.6 83 0.0018 31.7 21.2 56 269-324 213-268 (309)
172 PF12325 TMF_TATA_bd: TATA ele 77.4 52 0.0011 29.2 11.5 68 325-393 44-118 (120)
173 PF04156 IncA: IncA protein; 77.3 55 0.0012 29.5 15.6 26 265-290 123-148 (191)
174 PF07926 TPR_MLP1_2: TPR/MLP1/ 77.2 50 0.0011 28.9 17.3 25 266-290 25-49 (132)
175 PRK13428 F0F1 ATP synthase sub 77.2 1E+02 0.0022 32.5 16.6 66 331-396 85-156 (445)
176 PF06810 Phage_GP20: Phage min 76.9 24 0.00051 32.3 9.5 122 231-379 4-131 (155)
177 smart00502 BBC B-Box C-termina 76.7 38 0.00083 27.4 14.6 27 368-394 76-102 (127)
178 cd07596 BAR_SNX The Bin/Amphip 76.0 57 0.0012 29.0 20.6 97 227-338 87-183 (218)
179 CHL00019 atpF ATP synthase CF0 75.6 65 0.0014 29.5 15.5 17 381-397 163-179 (184)
180 PRK11281 hypothetical protein; 75.6 1.8E+02 0.0039 34.6 21.2 82 219-300 73-170 (1113)
181 PF05911 DUF869: Plant protein 75.5 1.5E+02 0.0032 34.0 16.8 76 256-331 594-669 (769)
182 PRK09174 F0F1 ATP synthase sub 75.0 78 0.0017 30.1 14.6 11 240-250 76-86 (204)
183 CHL00118 atpG ATP synthase CF0 74.8 63 0.0014 28.9 14.1 23 333-355 108-130 (156)
184 PF14992 TMCO5: TMCO5 family 74.7 64 0.0014 32.8 12.6 74 290-365 106-182 (280)
185 KOG0962|consensus 74.6 2.1E+02 0.0045 34.8 21.3 162 217-383 183-344 (1294)
186 KOG0962|consensus 74.2 2.1E+02 0.0046 34.7 22.8 123 217-344 831-953 (1294)
187 COG1382 GimC Prefoldin, chaper 73.9 67 0.0015 28.9 12.7 75 260-336 39-113 (119)
188 PF15070 GOLGA2L5: Putative go 73.8 1.5E+02 0.0033 32.9 24.5 44 352-395 197-240 (617)
189 PRK10246 exonuclease subunit S 73.7 1.8E+02 0.004 33.7 25.1 88 304-392 781-887 (1047)
190 cd07648 F-BAR_FCHO The F-BAR ( 73.6 86 0.0019 30.0 22.3 42 349-390 149-191 (261)
191 COG3883 Uncharacterized protei 73.5 1.1E+02 0.0023 31.0 24.5 88 279-370 127-217 (265)
192 PF06785 UPF0242: Uncharacteri 73.4 1.3E+02 0.0028 31.8 19.1 148 230-388 76-225 (401)
193 PF04108 APG17: Autophagy prot 73.3 1.2E+02 0.0026 31.5 19.8 138 204-346 241-381 (412)
194 KOG1853|consensus 73.2 1.2E+02 0.0025 31.2 21.0 128 217-351 18-159 (333)
195 COG4372 Uncharacterized protei 73.2 1.4E+02 0.0031 32.2 24.9 135 255-389 148-284 (499)
196 PRK06569 F0F1 ATP synthase sub 72.8 81 0.0018 29.3 15.5 81 314-396 58-143 (155)
197 cd00176 SPEC Spectrin repeats, 72.7 60 0.0013 27.7 15.0 32 365-396 147-178 (213)
198 PF03938 OmpH: Outer membrane 72.4 39 0.00084 29.4 9.4 32 262-293 40-71 (158)
199 PF11221 Med21: Subunit 21 of 72.2 9.8 0.00021 34.0 5.7 41 357-397 104-144 (144)
200 PF03915 AIP3: Actin interacti 72.1 58 0.0013 34.6 12.1 132 215-357 223-376 (424)
201 KOG0050|consensus 71.9 1.1E+02 0.0023 34.0 14.2 42 327-368 572-613 (617)
202 PF10205 KLRAQ: Predicted coil 71.8 50 0.0011 29.0 9.7 35 352-386 35-69 (102)
203 PRK14473 F0F1 ATP synthase sub 71.6 75 0.0016 28.4 16.2 14 383-396 149-162 (164)
204 cd07623 BAR_SNX1_2 The Bin/Amp 71.4 94 0.002 29.5 18.7 97 224-337 90-186 (224)
205 cd07656 F-BAR_srGAP The F-BAR 71.2 1E+02 0.0023 29.9 19.6 80 215-294 70-153 (241)
206 PF14362 DUF4407: Domain of un 71.1 1.1E+02 0.0023 29.9 13.1 27 259-285 136-162 (301)
207 PRK10698 phage shock protein P 71.1 1E+02 0.0022 29.6 18.5 45 238-282 25-69 (222)
208 KOG0995|consensus 70.7 1.8E+02 0.0039 32.4 21.7 15 128-142 112-126 (581)
209 PF10473 CENP-F_leu_zip: Leuci 70.4 87 0.0019 28.7 16.9 95 262-360 42-136 (140)
210 KOG1899|consensus 70.2 2E+02 0.0044 32.8 17.4 29 361-389 278-306 (861)
211 PF06008 Laminin_I: Laminin Do 69.8 1.1E+02 0.0023 29.5 23.0 87 302-388 122-219 (264)
212 COG5040 BMH1 14-3-3 family pro 69.7 19 0.00042 35.5 7.5 17 380-396 91-107 (268)
213 COG1566 EmrA Multidrug resista 69.5 1E+02 0.0022 31.9 13.0 47 329-375 155-201 (352)
214 PF05103 DivIVA: DivIVA protei 69.3 6.9 0.00015 33.0 3.9 26 330-355 87-112 (131)
215 PF05615 THOC7: Tho complex su 69.0 79 0.0017 27.6 14.5 31 317-347 73-103 (139)
216 PRK14471 F0F1 ATP synthase sub 68.8 86 0.0019 28.0 15.8 63 334-396 95-163 (164)
217 TIGR01000 bacteriocin_acc bact 68.7 1.5E+02 0.0033 30.7 18.3 15 359-373 293-307 (457)
218 KOG4302|consensus 68.7 2.1E+02 0.0045 32.4 18.5 133 215-347 163-327 (660)
219 PRK10929 putative mechanosensi 68.5 2.6E+02 0.0056 33.4 21.6 67 219-285 58-129 (1109)
220 PF09325 Vps5: Vps5 C terminal 68.5 97 0.0021 28.4 21.0 30 217-246 43-72 (236)
221 PRK13460 F0F1 ATP synthase sub 68.5 93 0.002 28.2 16.3 14 384-397 158-171 (173)
222 PF07106 TBPIP: Tat binding pr 68.3 74 0.0016 28.6 10.5 67 258-329 72-138 (169)
223 KOG0247|consensus 68.3 1.5E+02 0.0032 34.1 14.7 98 289-386 544-648 (809)
224 TIGR03545 conserved hypothetic 68.1 65 0.0014 35.2 11.7 17 334-350 214-230 (555)
225 TIGR01069 mutS2 MutS2 family p 67.8 1.6E+02 0.0035 33.3 15.0 26 234-259 505-530 (771)
226 KOG0976|consensus 67.7 2.6E+02 0.0056 33.0 21.6 120 259-378 226-358 (1265)
227 PF04642 DUF601: Protein of un 67.7 24 0.00053 35.7 7.9 66 262-327 214-279 (311)
228 TIGR03794 NHPM_micro_HlyD NHPM 67.2 1.5E+02 0.0033 30.2 19.8 25 349-373 226-250 (421)
229 cd07653 F-BAR_CIP4-like The F- 66.9 1.1E+02 0.0025 28.6 24.6 61 237-297 91-151 (251)
230 PF12718 Tropomyosin_1: Tropom 66.9 98 0.0021 27.9 19.1 38 261-298 3-40 (143)
231 PF09744 Jnk-SapK_ap_N: JNK_SA 66.3 1.1E+02 0.0024 28.3 15.9 44 326-369 72-115 (158)
232 KOG0978|consensus 66.2 2.4E+02 0.0052 32.1 25.5 6 115-120 271-276 (698)
233 PF05103 DivIVA: DivIVA protei 65.9 6.7 0.00015 33.1 3.2 85 263-347 37-122 (131)
234 PF12761 End3: Actin cytoskele 65.9 76 0.0016 30.7 10.5 39 345-383 155-193 (195)
235 PF11932 DUF3450: Protein of u 65.5 1.3E+02 0.0028 28.8 13.0 44 349-392 62-105 (251)
236 PF14931 IFT20: Intraflagellar 65.3 1E+02 0.0022 27.5 13.2 108 205-312 13-120 (120)
237 cd07647 F-BAR_PSTPIP The F-BAR 65.1 1.3E+02 0.0028 28.6 18.5 148 242-390 24-201 (239)
238 KOG0999|consensus 64.9 2.5E+02 0.0053 31.8 18.0 147 217-370 6-162 (772)
239 PF10226 DUF2216: Uncharacteri 64.6 1.4E+02 0.0031 29.0 13.5 82 309-391 43-142 (195)
240 PRK00409 recombination and DNA 64.4 2.6E+02 0.0055 31.8 16.1 23 326-348 571-593 (782)
241 PF04899 MbeD_MobD: MbeD/MobD 64.4 44 0.00096 27.3 7.5 53 310-377 17-69 (70)
242 KOG0018|consensus 64.3 3.2E+02 0.0068 32.8 22.1 44 278-321 309-352 (1141)
243 PF15397 DUF4618: Domain of un 64.2 1.6E+02 0.0036 29.5 23.4 152 240-396 63-218 (258)
244 KOG1962|consensus 64.1 91 0.002 30.6 10.8 47 347-393 155-201 (216)
245 PRK03947 prefoldin subunit alp 63.7 1E+02 0.0022 26.9 13.0 35 293-327 94-128 (140)
246 KOG0249|consensus 63.6 2.9E+02 0.0062 32.1 17.9 115 217-335 165-280 (916)
247 cd07623 BAR_SNX1_2 The Bin/Amp 62.9 1.4E+02 0.003 28.3 19.3 26 222-247 36-61 (224)
248 PF04100 Vps53_N: Vps53-like, 62.8 1.9E+02 0.0042 29.9 15.6 21 312-332 110-130 (383)
249 PF11802 CENP-K: Centromere-as 62.6 1.4E+02 0.003 30.3 12.0 84 230-315 93-183 (268)
250 TIGR03321 alt_F1F0_F0_B altern 62.6 1.5E+02 0.0032 28.5 16.0 25 331-355 89-113 (246)
251 TIGR01005 eps_transp_fam exopo 62.4 2.5E+02 0.0053 30.9 19.3 24 216-239 198-221 (754)
252 KOG4809|consensus 62.4 2.7E+02 0.0058 31.3 19.7 141 239-390 312-457 (654)
253 PF12325 TMF_TATA_bd: TATA ele 62.1 1.2E+02 0.0025 27.1 13.4 57 256-332 35-93 (120)
254 PRK14011 prefoldin subunit alp 61.7 1.2E+02 0.0026 27.8 10.5 44 259-302 4-50 (144)
255 TIGR00293 prefoldin, archaeal 61.5 1E+02 0.0022 26.2 10.3 11 289-299 33-43 (126)
256 COG5185 HEC1 Protein involved 61.4 2.6E+02 0.0057 31.0 18.3 60 318-377 512-571 (622)
257 PF06248 Zw10: Centromere/kine 61.3 2.4E+02 0.0051 30.4 19.8 41 329-369 126-166 (593)
258 COG1730 GIM5 Predicted prefold 61.3 1.4E+02 0.0029 27.6 12.2 37 294-330 95-131 (145)
259 PF08606 Prp19: Prp19/Pso4-lik 60.5 65 0.0014 26.7 7.7 56 214-277 14-69 (70)
260 KOG4848|consensus 60.4 1.6E+02 0.0034 29.1 11.5 60 325-384 121-180 (225)
261 PRK13455 F0F1 ATP synthase sub 59.9 1.4E+02 0.003 27.3 16.3 14 383-396 168-181 (184)
262 PF05565 Sipho_Gp157: Siphovir 59.6 1.4E+02 0.003 27.2 11.0 68 268-338 25-92 (162)
263 cd00584 Prefoldin_alpha Prefol 59.5 1E+02 0.0022 26.3 9.3 38 263-300 4-44 (129)
264 PF06637 PV-1: PV-1 protein (P 59.1 2.6E+02 0.0056 30.1 21.8 98 303-400 284-392 (442)
265 PF02994 Transposase_22: L1 tr 59.0 24 0.00052 36.2 6.3 77 312-392 142-218 (370)
266 PF15294 Leu_zip: Leucine zipp 58.7 2.1E+02 0.0047 29.1 14.4 73 215-291 128-209 (278)
267 KOG0976|consensus 58.6 3.7E+02 0.0081 31.8 23.2 169 217-390 104-303 (1265)
268 COG4477 EzrA Negative regulato 58.4 3E+02 0.0065 30.7 20.8 128 256-391 352-505 (570)
269 TIGR02449 conserved hypothetic 57.7 75 0.0016 25.8 7.6 53 273-325 1-53 (65)
270 PF13747 DUF4164: Domain of un 57.6 1.2E+02 0.0025 25.6 9.6 44 353-396 35-78 (89)
271 PRK03598 putative efflux pump 57.5 1.9E+02 0.0042 28.2 15.1 26 269-294 111-136 (331)
272 PF09730 BicD: Microtubule-ass 57.5 3.4E+02 0.0074 31.0 22.4 11 202-212 255-265 (717)
273 PF05130 FlgN: FlgN protein; 57.4 1.1E+02 0.0023 25.2 12.8 36 256-291 35-70 (143)
274 PF06248 Zw10: Centromere/kine 57.0 2.8E+02 0.0061 29.9 14.3 76 319-394 155-238 (593)
275 PF15254 CCDC14: Coiled-coil d 57.0 3.7E+02 0.0081 31.3 19.3 153 227-384 354-528 (861)
276 PF13166 AAA_13: AAA domain 56.6 2.9E+02 0.0062 29.9 22.9 12 231-242 289-300 (712)
277 PF09789 DUF2353: Uncharacteri 56.6 2.5E+02 0.0053 29.1 16.6 35 351-385 127-161 (319)
278 PF08657 DASH_Spc34: DASH comp 56.6 45 0.00098 33.1 7.5 81 290-375 177-257 (259)
279 PF10212 TTKRSYEDQ: Predicted 56.5 3E+02 0.0064 30.4 14.0 72 234-305 414-488 (518)
280 PF05622 HOOK: HOOK protein; 56.1 3.7 8.1E-05 44.8 0.0 72 306-377 575-649 (713)
281 PRK10361 DNA recombination pro 56.1 3E+02 0.0065 29.9 25.1 126 257-395 66-196 (475)
282 COG2433 Uncharacterized conser 55.6 2.3E+02 0.005 32.0 13.2 84 289-377 425-508 (652)
283 PF11500 Cut12: Spindle pole b 55.4 1.2E+02 0.0027 28.2 9.6 30 349-378 104-133 (152)
284 TIGR03545 conserved hypothetic 55.4 1.9E+02 0.0041 31.7 12.5 10 128-137 84-93 (555)
285 KOG0239|consensus 55.0 3.5E+02 0.0077 30.4 18.1 42 287-328 221-262 (670)
286 PRK14475 F0F1 ATP synthase sub 54.9 1.6E+02 0.0036 26.5 18.1 39 230-268 34-72 (167)
287 COG4372 Uncharacterized protei 54.8 3.1E+02 0.0068 29.7 24.3 121 256-380 121-247 (499)
288 PRK14474 F0F1 ATP synthase sub 54.6 2.2E+02 0.0047 27.8 15.9 65 332-396 90-159 (250)
289 KOG1962|consensus 54.6 2.2E+02 0.0048 28.0 11.9 97 229-349 107-203 (216)
290 PF07352 Phage_Mu_Gam: Bacteri 54.5 50 0.0011 29.4 6.8 33 335-367 24-56 (149)
291 PF07464 ApoLp-III: Apolipopho 54.2 1E+02 0.0022 28.6 8.8 55 292-360 26-80 (155)
292 PF13514 AAA_27: AAA domain 54.0 4.2E+02 0.009 31.0 23.8 33 216-248 740-772 (1111)
293 PRK09173 F0F1 ATP synthase sub 53.8 1.6E+02 0.0035 26.1 15.3 13 384-396 144-156 (159)
294 PF10212 TTKRSYEDQ: Predicted 53.8 3.4E+02 0.0075 29.9 14.3 94 279-383 420-513 (518)
295 PF14643 DUF4455: Domain of un 53.6 3E+02 0.0065 29.1 19.7 126 217-350 328-454 (473)
296 PF09403 FadA: Adhesion protei 53.1 1.7E+02 0.0038 26.3 14.5 32 263-294 50-81 (126)
297 PF10211 Ax_dynein_light: Axon 52.9 2E+02 0.0044 27.0 15.5 32 305-336 132-163 (189)
298 PF02841 GBP_C: Guanylate-bind 52.8 2.4E+02 0.0051 27.8 21.9 13 314-326 204-216 (297)
299 PF03148 Tektin: Tektin family 52.6 2.8E+02 0.0061 28.6 23.1 154 209-378 203-366 (384)
300 COG2433 Uncharacterized conser 52.5 4E+02 0.0086 30.3 18.9 36 356-391 473-508 (652)
301 TIGR03007 pepcterm_ChnLen poly 52.4 2.9E+02 0.0062 28.6 22.4 23 216-238 165-187 (498)
302 PF08826 DMPK_coil: DMPK coile 51.5 1E+02 0.0022 24.7 7.4 37 348-384 23-59 (61)
303 PRK07353 F0F1 ATP synthase sub 51.4 1.6E+02 0.0035 25.4 15.5 19 334-352 92-110 (140)
304 PF08581 Tup_N: Tup N-terminal 50.7 1.5E+02 0.0032 24.8 9.5 58 231-289 6-63 (79)
305 cd07677 F-BAR_FCHSD2 The F-BAR 50.7 2.8E+02 0.0061 28.0 17.3 80 217-296 72-155 (260)
306 cd07651 F-BAR_PombeCdc15_like 50.4 2.3E+02 0.0049 26.8 21.7 54 239-292 88-141 (236)
307 PF14193 DUF4315: Domain of un 49.9 1.1E+02 0.0024 25.8 7.7 56 298-363 6-61 (83)
308 PRK13453 F0F1 ATP synthase sub 49.6 2.1E+02 0.0045 26.1 16.6 16 381-396 157-172 (173)
309 PRK10361 DNA recombination pro 49.4 3.8E+02 0.0083 29.2 23.3 27 265-291 92-118 (475)
310 PF13514 AAA_27: AAA domain 49.0 4.9E+02 0.011 30.4 23.4 35 255-289 677-711 (1111)
311 PRK05759 F0F1 ATP synthase sub 49.0 1.8E+02 0.004 25.4 15.3 39 231-269 29-67 (156)
312 TIGR00293 prefoldin, archaeal 48.8 1.3E+02 0.0029 25.5 8.3 40 291-330 84-123 (126)
313 PF05377 FlaC_arch: Flagella a 48.8 79 0.0017 25.1 6.3 35 256-290 12-46 (55)
314 PF06810 Phage_GP20: Phage min 48.7 2.2E+02 0.0047 26.1 10.6 44 329-373 31-74 (155)
315 COG3883 Uncharacterized protei 48.7 3E+02 0.0066 27.8 20.8 117 258-374 38-182 (265)
316 cd07686 F-BAR_Fer The F-BAR (F 48.6 2.8E+02 0.006 27.3 21.8 80 216-295 66-150 (234)
317 PF14915 CCDC144C: CCDC144C pr 48.4 3.3E+02 0.0072 28.2 22.5 137 256-396 89-246 (305)
318 PF05557 MAD: Mitotic checkpoi 48.3 3.8E+02 0.0083 29.7 13.6 41 278-318 495-535 (722)
319 PF04102 SlyX: SlyX; InterPro 47.9 1E+02 0.0022 24.5 6.9 27 344-370 26-52 (69)
320 KOG3366|consensus 47.8 1.9E+02 0.0042 27.6 9.8 57 305-362 58-124 (172)
321 COG0013 AlaS Alanyl-tRNA synth 47.8 28 0.0006 40.1 5.0 100 278-397 704-804 (879)
322 PRK06569 F0F1 ATP synthase sub 47.7 2.4E+02 0.0052 26.3 15.3 50 302-354 101-150 (155)
323 KOG2391|consensus 47.7 3.7E+02 0.008 28.5 15.7 33 245-277 233-265 (365)
324 TIGR00998 8a0101 efflux pump m 47.5 2.7E+02 0.0058 26.9 14.8 13 227-239 74-86 (334)
325 PRK13461 F0F1 ATP synthase sub 47.5 2E+02 0.0044 25.5 12.1 14 382-395 145-158 (159)
326 PF14932 HAUS-augmin3: HAUS au 47.5 2.8E+02 0.006 27.0 12.0 10 318-327 86-95 (256)
327 PF15294 Leu_zip: Leucine zipp 47.4 3.3E+02 0.0071 27.8 14.9 109 226-334 86-210 (278)
328 smart00101 14_3_3 14-3-3 homol 47.4 64 0.0014 31.7 6.9 84 312-396 6-105 (244)
329 TIGR02894 DNA_bind_RsfA transc 47.3 89 0.0019 29.5 7.4 50 339-388 100-149 (161)
330 KOG0946|consensus 47.1 5.5E+02 0.012 30.3 20.6 40 216-255 668-707 (970)
331 PRK00736 hypothetical protein; 47.0 84 0.0018 25.2 6.3 47 350-396 5-51 (68)
332 PRK09343 prefoldin subunit bet 46.9 2E+02 0.0043 25.2 11.8 39 281-319 73-111 (121)
333 cd07673 F-BAR_FCHO2 The F-BAR 46.7 3E+02 0.0064 27.1 22.9 42 349-390 156-198 (269)
334 PF03938 OmpH: Outer membrane 46.7 2E+02 0.0043 25.0 14.3 26 217-242 34-59 (158)
335 PF00244 14-3-3: 14-3-3 protei 46.6 2E+02 0.0043 27.7 9.9 85 312-396 6-103 (236)
336 cd00176 SPEC Spectrin repeats, 46.6 1.8E+02 0.004 24.7 16.4 25 273-297 73-97 (213)
337 PF05600 DUF773: Protein of un 46.6 4.1E+02 0.009 28.8 13.5 34 367-400 470-505 (507)
338 PF10234 Cluap1: Clusterin-ass 46.4 3.3E+02 0.0071 27.5 14.7 10 101-110 7-16 (267)
339 PRK04406 hypothetical protein; 46.3 1.1E+02 0.0023 25.2 6.9 45 350-394 11-55 (75)
340 COG4026 Uncharacterized protei 46.2 1.6E+02 0.0036 29.7 9.4 59 339-397 152-210 (290)
341 PF09755 DUF2046: Uncharacteri 46.1 3.6E+02 0.0078 27.9 20.3 95 215-319 23-121 (310)
342 cd07675 F-BAR_FNBP1L The F-BAR 46.0 3.2E+02 0.0068 27.2 19.6 48 247-294 102-149 (252)
343 PF05769 DUF837: Protein of un 45.9 2.6E+02 0.0057 26.3 14.9 106 218-344 69-175 (181)
344 PF00430 ATP-synt_B: ATP synth 45.6 1.1E+02 0.0023 25.6 7.2 31 325-355 51-81 (132)
345 COG1730 GIM5 Predicted prefold 45.4 92 0.002 28.7 7.1 27 217-243 18-44 (145)
346 PRK00295 hypothetical protein; 45.2 99 0.0021 24.8 6.5 46 350-395 5-50 (68)
347 COG0576 GrpE Molecular chapero 45.2 2.8E+02 0.006 26.3 10.8 33 364-396 94-133 (193)
348 PF14193 DUF4315: Domain of un 45.2 91 0.002 26.3 6.5 43 333-388 2-44 (83)
349 PLN03188 kinesin-12 family pro 45.2 6.7E+02 0.015 30.8 17.3 127 208-359 1113-1252(1320)
350 PRK02793 phi X174 lysis protei 45.0 98 0.0021 25.1 6.5 47 349-395 7-53 (72)
351 PF09738 DUF2051: Double stran 44.9 3.6E+02 0.0078 27.6 12.9 66 262-330 109-174 (302)
352 TIGR01010 BexC_CtrB_KpsE polys 44.8 3.3E+02 0.0072 27.2 16.7 66 257-327 169-234 (362)
353 PRK04325 hypothetical protein; 44.4 93 0.002 25.3 6.3 45 351-395 10-54 (74)
354 PF03962 Mnd1: Mnd1 family; I 44.1 2.8E+02 0.0061 26.1 11.6 36 258-293 62-97 (188)
355 PRK10246 exonuclease subunit S 44.1 5.9E+02 0.013 29.8 27.5 25 361-385 728-752 (1047)
356 PF10186 Atg14: UV radiation r 44.0 2.8E+02 0.0061 26.1 19.9 12 221-232 29-40 (302)
357 PF01166 TSC22: TSC-22/dip/bun 43.8 41 0.0009 27.1 4.1 33 299-331 13-45 (59)
358 PF06937 EURL: EURL protein; 43.8 62 0.0013 33.0 6.2 37 255-291 237-273 (285)
359 PF13949 ALIX_LYPXL_bnd: ALIX 43.7 3E+02 0.0065 26.3 14.3 146 240-390 25-183 (296)
360 PRK12704 phosphodiesterase; Pr 43.7 4.6E+02 0.01 28.5 16.2 106 286-393 31-139 (520)
361 PF05278 PEARLI-4: Arabidopsis 43.7 3.7E+02 0.008 27.4 16.5 130 227-372 119-250 (269)
362 PF10267 Tmemb_cc2: Predicted 43.4 4.3E+02 0.0094 28.1 14.7 77 217-296 224-305 (395)
363 cd07663 BAR_SNX5 The Bin/Amphi 43.3 3.3E+02 0.0071 26.7 17.5 26 273-298 74-99 (218)
364 TIGR01010 BexC_CtrB_KpsE polys 43.3 3.5E+02 0.0076 27.0 11.7 35 259-293 215-249 (362)
365 cd00890 Prefoldin Prefoldin is 43.2 1.9E+02 0.0041 24.2 8.2 42 335-376 86-127 (129)
366 PF14992 TMCO5: TMCO5 family 43.1 3.8E+02 0.0083 27.4 13.8 145 216-364 8-165 (280)
367 PF02609 Exonuc_VII_S: Exonucl 43.0 1.4E+02 0.0031 22.4 7.1 48 288-343 5-52 (53)
368 PF12709 Kinetocho_Slk19: Cent 43.0 2.2E+02 0.0047 24.5 11.0 40 348-387 47-86 (87)
369 PF02841 GBP_C: Guanylate-bind 42.8 3.4E+02 0.0074 26.7 16.6 14 370-383 283-296 (297)
370 PRK03947 prefoldin subunit alp 42.8 2.3E+02 0.0049 24.7 13.6 28 258-285 6-33 (140)
371 PF10481 CENP-F_N: Cenp-F N-te 42.8 4E+02 0.0088 27.6 17.2 83 215-297 21-113 (307)
372 PRK15365 type III secretion sy 42.7 2.5E+02 0.0053 25.1 9.8 52 222-288 12-67 (107)
373 PF02994 Transposase_22: L1 tr 42.6 71 0.0015 32.8 6.7 36 359-394 153-188 (370)
374 PF05266 DUF724: Protein of un 42.2 2.8E+02 0.0061 26.3 10.0 56 229-284 127-185 (190)
375 PF04912 Dynamitin: Dynamitin 42.0 3E+02 0.0066 28.1 11.0 17 56-72 104-120 (388)
376 PF05622 HOOK: HOOK protein; 42.0 8.5 0.00018 42.2 0.0 103 216-319 243-351 (713)
377 PRK13461 F0F1 ATP synthase sub 41.9 2.5E+02 0.0054 24.9 18.6 25 231-255 30-54 (159)
378 KOG4470|consensus 41.8 2.2E+02 0.0048 28.6 9.5 35 235-269 164-203 (246)
379 PF06160 EzrA: Septation ring 41.7 4.9E+02 0.011 28.2 22.3 54 257-310 100-153 (560)
380 cd07627 BAR_Vps5p The Bin/Amph 41.6 3E+02 0.0066 25.8 22.5 54 329-386 119-172 (216)
381 PRK08475 F0F1 ATP synthase sub 41.2 2.8E+02 0.0061 25.3 12.1 79 284-362 51-137 (167)
382 PF07106 TBPIP: Tat binding pr 40.9 2.7E+02 0.0059 25.0 11.5 62 216-279 76-137 (169)
383 PF12329 TMF_DNA_bd: TATA elem 40.9 2E+02 0.0043 23.4 8.5 61 230-290 2-72 (74)
384 PF07544 Med9: RNA polymerase 40.9 1.4E+02 0.0031 24.5 7.0 56 273-328 22-80 (83)
385 KOG4360|consensus 40.8 5.7E+02 0.012 28.7 16.7 110 234-347 191-304 (596)
386 smart00338 BRLZ basic region l 40.7 1.6E+02 0.0034 22.6 6.9 42 348-390 11-52 (65)
387 PF04912 Dynamitin: Dynamitin 40.6 4.2E+02 0.0091 27.1 12.5 12 229-240 268-279 (388)
388 CHL00118 atpG ATP synthase CF0 40.5 2.7E+02 0.0059 24.9 15.2 25 231-255 47-71 (156)
389 PF12709 Kinetocho_Slk19: Cent 40.3 2.4E+02 0.0052 24.3 11.9 48 337-384 21-69 (87)
390 PF05816 TelA: Toxic anion res 40.1 4.1E+02 0.0088 26.8 15.1 94 279-372 84-191 (333)
391 PF08657 DASH_Spc34: DASH comp 40.0 1.4E+02 0.0031 29.7 8.0 24 114-138 36-59 (259)
392 PF15035 Rootletin: Ciliary ro 39.8 1.2E+02 0.0026 28.6 7.2 29 355-383 65-100 (182)
393 PRK07352 F0F1 ATP synthase sub 39.8 2.9E+02 0.0063 25.0 14.6 28 231-258 44-71 (174)
394 PRK13428 F0F1 ATP synthase sub 39.7 4.8E+02 0.01 27.6 14.6 23 231-253 26-48 (445)
395 PF02388 FemAB: FemAB family; 39.6 1.7E+02 0.0036 30.2 8.8 26 115-140 85-110 (406)
396 PRK02119 hypothetical protein; 39.6 1.4E+02 0.003 24.3 6.6 45 350-394 9-53 (73)
397 TIGR03319 YmdA_YtgF conserved 39.4 5.3E+02 0.012 28.0 15.4 104 286-395 25-128 (514)
398 PLN02320 seryl-tRNA synthetase 39.3 4.5E+02 0.0097 28.8 12.2 34 350-383 130-163 (502)
399 PRK06231 F0F1 ATP synthase sub 39.2 3.4E+02 0.0074 25.7 15.3 26 231-256 73-98 (205)
400 TIGR00998 8a0101 efflux pump m 39.2 3.6E+02 0.0079 26.0 14.8 7 218-224 79-85 (334)
401 TIGR01144 ATP_synt_b ATP synth 38.8 2.6E+02 0.0057 24.2 15.2 27 231-257 20-46 (147)
402 PF09325 Vps5: Vps5 C terminal 38.7 3.1E+02 0.0068 25.1 21.3 69 279-347 82-157 (236)
403 PF06120 Phage_HK97_TLTM: Tail 38.0 4.6E+02 0.01 26.9 15.3 122 268-391 44-175 (301)
404 PF00170 bZIP_1: bZIP transcri 37.9 1.1E+02 0.0024 23.5 5.6 30 362-391 31-60 (64)
405 PF09755 DUF2046: Uncharacteri 37.8 4.9E+02 0.011 27.0 24.2 39 256-294 82-121 (310)
406 KOG0977|consensus 37.7 6.1E+02 0.013 28.2 23.4 156 223-385 60-229 (546)
407 TIGR03007 pepcterm_ChnLen poly 37.4 4.9E+02 0.011 27.0 19.4 26 220-245 162-187 (498)
408 smart00338 BRLZ basic region l 37.4 1.9E+02 0.004 22.2 6.8 44 344-387 20-63 (65)
409 PRK14068 exodeoxyribonuclease 37.4 97 0.0021 25.6 5.5 53 289-349 13-65 (76)
410 cd07676 F-BAR_FBP17 The F-BAR 37.4 4.1E+02 0.0088 26.0 19.7 97 245-341 101-197 (253)
411 COG4942 Membrane-bound metallo 37.3 5.6E+02 0.012 27.6 20.9 150 240-389 41-207 (420)
412 PF05278 PEARLI-4: Arabidopsis 37.1 4.7E+02 0.01 26.6 13.8 67 252-318 194-260 (269)
413 PF13874 Nup54: Nucleoporin co 37.0 2.9E+02 0.0062 24.6 8.8 20 279-298 30-49 (141)
414 TIGR02231 conserved hypothetic 36.9 4.9E+02 0.011 27.5 11.9 25 256-280 69-93 (525)
415 PF07464 ApoLp-III: Apolipopho 36.6 2.8E+02 0.0061 25.7 8.9 33 268-300 37-70 (155)
416 PF00015 MCPsignal: Methyl-acc 36.5 3E+02 0.0065 24.3 17.4 20 277-296 133-152 (213)
417 PF03961 DUF342: Protein of un 36.0 3.3E+02 0.0071 28.4 10.3 77 215-291 330-408 (451)
418 KOG3647|consensus 35.9 5.2E+02 0.011 26.9 13.3 52 256-307 110-161 (338)
419 PRK08476 F0F1 ATP synthase sub 35.9 3.1E+02 0.0068 24.3 14.4 22 230-251 31-52 (141)
420 PF04048 Sec8_exocyst: Sec8 ex 35.8 3.2E+02 0.0068 24.3 12.8 77 226-302 51-130 (142)
421 PF09304 Cortex-I_coil: Cortex 35.8 3.2E+02 0.007 24.4 14.3 70 217-290 7-76 (107)
422 PRK05431 seryl-tRNA synthetase 35.7 5.2E+02 0.011 27.1 11.7 46 333-379 50-95 (425)
423 KOG3190|consensus 35.6 4.9E+02 0.011 26.4 11.4 81 300-380 154-241 (256)
424 PF04129 Vps52: Vps52 / Sac2 f 35.5 5.5E+02 0.012 27.5 12.1 79 306-389 3-81 (508)
425 COG0216 PrfA Protein chain rel 35.5 5.7E+02 0.012 27.2 12.3 20 279-298 33-52 (363)
426 KOG4687|consensus 35.4 5.4E+02 0.012 26.9 12.2 60 272-331 9-68 (389)
427 PF07798 DUF1640: Protein of u 35.4 3.5E+02 0.0077 24.8 20.0 92 263-360 56-148 (177)
428 PRK07353 F0F1 ATP synthase sub 35.3 2.9E+02 0.0063 23.7 15.2 25 231-255 30-54 (140)
429 PF07200 Mod_r: Modifier of ru 35.2 3.1E+02 0.0067 24.0 9.3 85 295-388 9-93 (150)
430 KOG0963|consensus 35.0 7.2E+02 0.016 28.2 21.9 22 363-384 316-337 (629)
431 cd07667 BAR_SNX30 The Bin/Amph 34.6 4.7E+02 0.01 26.0 16.3 60 222-281 103-169 (240)
432 PF08702 Fib_alpha: Fibrinogen 34.6 3.6E+02 0.0078 24.6 17.1 103 215-325 25-129 (146)
433 KOG0239|consensus 34.5 7.2E+02 0.016 28.1 18.0 26 302-327 222-247 (670)
434 PF07851 TMPIT: TMPIT-like pro 34.4 4.3E+02 0.0092 27.5 10.6 38 273-310 5-42 (330)
435 PF02403 Seryl_tRNA_N: Seryl-t 34.3 2.7E+02 0.0058 23.1 9.0 65 255-326 33-100 (108)
436 PF07083 DUF1351: Protein of u 34.1 4.2E+02 0.0092 25.3 17.0 106 277-384 65-171 (215)
437 KOG2273|consensus 34.0 5.8E+02 0.013 26.8 20.3 20 227-246 303-322 (503)
438 TIGR01280 xseB exodeoxyribonuc 33.5 75 0.0016 25.4 4.1 49 348-397 3-51 (67)
439 PRK11519 tyrosine kinase; Prov 33.5 7.1E+02 0.015 27.7 18.8 32 257-288 266-297 (719)
440 PF15066 CAGE1: Cancer-associa 33.4 7.1E+02 0.015 27.6 21.4 69 257-325 368-436 (527)
441 TIGR03752 conj_TIGR03752 integ 33.1 5.4E+02 0.012 28.2 11.5 82 289-374 59-140 (472)
442 TIGR00414 serS seryl-tRNA synt 33.1 4.1E+02 0.0089 27.8 10.5 50 333-382 52-101 (418)
443 cd07653 F-BAR_CIP4-like The F- 32.7 4.2E+02 0.0092 24.9 23.8 22 305-326 117-138 (251)
444 PRK11519 tyrosine kinase; Prov 32.7 7.3E+02 0.016 27.6 16.0 20 257-276 273-292 (719)
445 KOG2196|consensus 32.7 5.4E+02 0.012 26.1 18.8 77 313-389 166-251 (254)
446 PF07765 KIP1: KIP1-like prote 32.5 2E+02 0.0043 24.1 6.5 63 213-289 12-74 (74)
447 PF09730 BicD: Microtubule-ass 32.3 8.3E+02 0.018 28.1 21.3 131 250-385 40-181 (717)
448 PF10498 IFT57: Intra-flagella 32.2 6E+02 0.013 26.5 15.0 28 264-291 219-246 (359)
449 cd07651 F-BAR_PombeCdc15_like 32.2 4.4E+02 0.0095 24.9 22.4 119 262-390 71-198 (236)
450 PF02646 RmuC: RmuC family; I 32.0 2.8E+02 0.006 27.7 8.7 35 325-359 6-40 (304)
451 PF08647 BRE1: BRE1 E3 ubiquit 31.9 3.1E+02 0.0067 23.0 11.3 86 217-313 8-93 (96)
452 PF05335 DUF745: Protein of un 31.9 4.6E+02 0.01 25.1 17.4 105 243-347 66-173 (188)
453 PF12777 MT: Microtubule-bindi 31.8 3.3E+02 0.0071 27.5 9.3 92 217-319 219-310 (344)
454 PF05130 FlgN: FlgN protein; 31.7 2.9E+02 0.0063 22.6 12.6 24 369-392 89-112 (143)
455 TIGR02131 phaP_Bmeg polyhydrox 31.6 4.5E+02 0.0097 24.9 9.3 50 227-283 112-161 (165)
456 PRK09841 cryptic autophosphory 31.6 7.7E+02 0.017 27.5 17.4 32 257-288 266-297 (726)
457 PF02609 Exonuc_VII_S: Exonucl 31.6 1.1E+02 0.0024 23.0 4.6 49 349-398 2-50 (53)
458 KOG0742|consensus 31.5 7.7E+02 0.017 27.5 13.2 91 291-389 94-184 (630)
459 PF04871 Uso1_p115_C: Uso1 / p 31.4 3.9E+02 0.0084 24.0 14.4 80 243-322 26-106 (136)
460 KOG2273|consensus 31.4 6.4E+02 0.014 26.5 23.8 44 301-345 357-400 (503)
461 PF14915 CCDC144C: CCDC144C pr 31.4 6.2E+02 0.013 26.3 21.5 124 263-396 167-296 (305)
462 PF05266 DUF724: Protein of un 31.2 4.7E+02 0.01 24.9 14.1 63 264-326 123-185 (190)
463 PRK14472 F0F1 ATP synthase sub 30.9 4.1E+02 0.0088 24.1 15.3 26 231-256 43-68 (175)
464 PF11740 KfrA_N: Plasmid repli 30.7 2.6E+02 0.0056 23.3 7.1 39 335-373 80-118 (120)
465 PF00769 ERM: Ezrin/radixin/mo 30.6 5.2E+02 0.011 25.2 14.6 37 248-284 2-38 (246)
466 PRK08476 F0F1 ATP synthase sub 30.5 3.9E+02 0.0084 23.7 15.2 9 240-248 30-38 (141)
467 PF07111 HCR: Alpha helical co 30.3 9.1E+02 0.02 28.0 22.7 111 251-361 507-618 (739)
468 KOG4403|consensus 30.2 7.9E+02 0.017 27.2 15.5 23 272-294 252-274 (575)
469 cd00632 Prefoldin_beta Prefold 30.1 3.3E+02 0.0072 22.8 12.6 39 292-330 62-100 (105)
470 PF00170 bZIP_1: bZIP transcri 29.9 2.6E+02 0.0055 21.4 6.6 33 362-394 24-56 (64)
471 COG1722 XseB Exonuclease VII s 29.8 2.4E+02 0.0051 23.7 6.6 31 321-351 41-71 (81)
472 PF10234 Cluap1: Clusterin-ass 29.8 4.8E+02 0.01 26.4 9.9 41 287-327 177-217 (267)
473 PF04420 CHD5: CHD5-like prote 29.6 1.4E+02 0.003 27.2 5.8 32 258-291 40-71 (161)
474 PF14916 CCDC92: Coiled-coil d 29.6 1.2E+02 0.0026 24.4 4.7 38 331-368 2-39 (60)
475 KOG2150|consensus 29.4 8E+02 0.017 27.6 12.1 105 215-322 45-190 (575)
476 KOG0979|consensus 29.4 1.1E+03 0.023 28.5 23.0 75 265-343 222-301 (1072)
477 PF15456 Uds1: Up-regulated Du 29.3 2.7E+02 0.0058 24.9 7.3 26 371-396 74-99 (124)
478 PF09798 LCD1: DNA damage chec 29.1 2.7E+02 0.0059 31.4 8.8 56 323-378 6-61 (654)
479 KOG4637|consensus 29.0 7.8E+02 0.017 26.8 18.0 102 222-326 139-249 (464)
480 PRK13453 F0F1 ATP synthase sub 29.0 4.5E+02 0.0097 24.0 15.2 25 231-255 43-67 (173)
481 KOG0993|consensus 28.9 8.2E+02 0.018 26.9 14.3 97 283-390 100-199 (542)
482 TIGR03825 FliH_bacil flagellar 28.8 5.4E+02 0.012 24.9 14.3 17 382-398 160-176 (255)
483 PRK13411 molecular chaperone D 28.7 4.9E+02 0.011 28.6 10.6 69 326-394 530-599 (653)
484 cd07598 BAR_FAM92 The Bin/Amph 28.6 5.3E+02 0.012 24.8 19.2 133 222-357 28-167 (211)
485 PRK00977 exodeoxyribonuclease 28.6 97 0.0021 25.6 4.1 50 347-397 11-60 (80)
486 PF06156 DUF972: Protein of un 28.6 3.2E+02 0.007 23.8 7.5 52 267-318 3-54 (107)
487 TIGR00618 sbcc exonuclease Sbc 28.4 9.9E+02 0.021 27.7 21.3 23 304-326 782-804 (1042)
488 TIGR01144 ATP_synt_b ATP synth 28.3 4E+02 0.0086 23.1 12.1 10 384-393 137-146 (147)
489 PRK14473 F0F1 ATP synthase sub 28.2 4.3E+02 0.0094 23.6 15.3 25 231-255 33-57 (164)
490 PRK06798 fliD flagellar cappin 28.2 2.3E+02 0.0051 29.9 7.8 38 339-376 400-437 (440)
491 PF08598 Sds3: Sds3-like; Int 28.0 1.2E+02 0.0027 27.7 5.2 60 269-330 2-62 (205)
492 KOG2991|consensus 27.8 7E+02 0.015 25.9 12.1 84 217-320 215-298 (330)
493 COG0172 SerS Seryl-tRNA synthe 27.7 8E+02 0.017 26.5 12.0 52 332-383 50-101 (429)
494 PRK14156 heat shock protein Gr 27.7 2.8E+02 0.006 26.3 7.5 53 302-354 29-81 (177)
495 PRK14067 exodeoxyribonuclease 27.7 2.2E+02 0.0049 23.7 6.1 51 286-344 11-61 (80)
496 PF07820 TraC: TraC-like prote 27.4 96 0.0021 27.0 4.0 55 345-399 4-64 (92)
497 PRK00888 ftsB cell division pr 27.4 2.4E+02 0.0052 24.3 6.5 50 285-334 26-75 (105)
498 COG1340 Uncharacterized archae 27.2 7.1E+02 0.015 25.7 18.3 122 214-346 153-276 (294)
499 COG1340 Uncharacterized archae 27.2 7.1E+02 0.015 25.7 22.7 164 215-390 30-205 (294)
500 PF05055 DUF677: Protein of un 27.2 7.2E+02 0.016 25.8 11.3 90 215-316 225-318 (336)
No 1
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=100.00 E-value=8.3e-59 Score=430.37 Aligned_cols=182 Identities=42% Similarity=0.626 Sum_probs=179.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHH
Q psy13761 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVI 294 (402)
Q Consensus 215 ~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~Kev 294 (402)
.+|.++|++++.+|.+|++||++||+||++||++.+++++.+..+++++++||||+++||+|||+||+|||+||+|+|+|
T Consensus 26 ~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~v 105 (207)
T PF05010_consen 26 QELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEV 105 (207)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHH
Q psy13761 295 IEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLA 374 (402)
Q Consensus 295 IegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLE 374 (402)
|+||++||++||+|+++|.++|.+++|||++||+||+++|+.||++|++|+++|++|+++|+|+|||+||+++||+++|+
T Consensus 106 i~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~Le 185 (207)
T PF05010_consen 106 IEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLE 185 (207)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcccc
Q psy13761 375 RKTEENAELTSICDDLISKLSS 396 (402)
Q Consensus 375 QKtKENeELTkICDELIsK~~~ 396 (402)
||++||+|||+||||||++||+
T Consensus 186 QK~kEn~ELtkICDeLI~k~~k 207 (207)
T PF05010_consen 186 QKTKENEELTKICDELISKMGK 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999985
No 2
>KOG0980|consensus
Probab=97.89 E-value=0.011 Score=66.11 Aligned_cols=164 Identities=16% Similarity=0.236 Sum_probs=96.1
Q ss_pred CcccccccccchHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhhhhhhHHH---HH-------HHHH
Q psy13761 204 NLISPERNSTSDEKDKLIEKLKKENA-----------SYQKMLNDYENTITQCVNQRENDKKQF---EK-------YKKE 262 (402)
Q Consensus 204 ~ii~~l~~s~~~~~~~~~e~l~~~n~-----------eM~~Im~EYEktI~qlIeE~eq~k~~~---~~-------eiqk 262 (402)
+-+|+.--||.+..+-.|+.+-++.. +-+.++..|+.-+..|-.+.++++... .. +...
T Consensus 318 ~~~~~~~~sqkd~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaq 397 (980)
T KOG0980|consen 318 PASDPPNASQKDPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQ 397 (980)
T ss_pred cccCCcccccCChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44444556666667767766655433 334566678888777776655544433 22 2333
Q ss_pred HHhHHHHHHHH---HHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy13761 263 LEKEKEEVQLH---LRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDAL---KTHAISQLEK 336 (402)
Q Consensus 263 llkERDQa~aD---LnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqAL---KaHAEEKLe~ 336 (402)
+...|.|...- +..+|.-+.-...||+++|+.+..+..+--.|.....+-...+.-.++--..+ +..-..+|+.
T Consensus 398 l~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~ 477 (980)
T KOG0980|consen 398 LLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEE 477 (980)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333333333 36778888999999999999999999998888877777666665554433321 2222222222
Q ss_pred H----------HHHHHHHHHhhHHHHHHHHHHhhHHHHHHh
Q psy13761 337 A----------NQDLDLRNKTYEMETTKLKAMLKKSEMQIT 367 (402)
Q Consensus 337 A----------NEEIaqvrsk~eaE~~aLqA~LKKeEmkv~ 367 (402)
+ -++++.+-.+.+.|++.|.-.+.+.|..+.
T Consensus 478 ~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~ 518 (980)
T KOG0980|consen 478 LQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLS 518 (980)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 233444444555555555555555555533
No 3
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.40 E-value=0.14 Score=55.01 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=41.5
Q ss_pred HhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy13761 346 KTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKL 394 (402)
Q Consensus 346 sk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~ 394 (402)
...++++.+|+..||..+-++++.+....-..+|..++..+=|-.|+.+
T Consensus 279 ~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeL 327 (546)
T PF07888_consen 279 QQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAEL 327 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888899999999999999999999999999888888877777654
No 4
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=97.35 E-value=0.15 Score=48.62 Aligned_cols=178 Identities=11% Similarity=0.115 Sum_probs=114.8
Q ss_pred ccccchHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHH----HHHHHhHH
Q psy13761 210 RNSTSDEKDKLIEKLKKE-------NASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEV----QLHLRNSE 278 (402)
Q Consensus 210 ~~s~~~~~~~~~e~l~~~-------n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa----~aDLnS~E 278 (402)
+||| +|||..+...+++ +.+++.=+++..+.+.+|- ..-..++..|..++.+..+- ...+..+-
T Consensus 1 ~~s~-~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~----~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~ 75 (207)
T PF05010_consen 1 KYSQ-KDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMR----KIMEEYEKTIAQMIEEKQKQKELSEAEIQKLL 75 (207)
T ss_pred CCcH-HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH
Confidence 5886 7999999998887 6677666666666555442 11222333344433333222 12222222
Q ss_pred HhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy13761 279 IAFNDVHLKYERSKVIIEGMKANEDHLRARHSEL-------EEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEME 351 (402)
Q Consensus 279 kSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey-------~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE 351 (402)
+-=..+..-...+-....++.+-.+.+|..+..| ...+.....|+...-..-..--..|.+.|+........-
T Consensus 76 ~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v 155 (207)
T PF05010_consen 76 KERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQV 155 (207)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111122222233333445555555555555555 455666667777666666666678889999888888888
Q ss_pred HHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 352 TTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLIS 392 (402)
Q Consensus 352 ~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIs 392 (402)
....++.+...+..+.-.+-.+.......+.-|+=++||+.
T Consensus 156 ~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtk 196 (207)
T PF05010_consen 156 RSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTK 196 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999974
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.25 E-value=0.18 Score=54.83 Aligned_cols=22 Identities=5% Similarity=0.073 Sum_probs=8.0
Q ss_pred HHHHHHhHHHhhHHHHHHHHhh
Q psy13761 270 VQLHLRNSEIAFNDVHLKYERS 291 (402)
Q Consensus 270 a~aDLnS~EkSFSDLhrRYEK~ 291 (402)
+..++..++.....+-.+.+++
T Consensus 724 ~~~~~~~~~~~~~~~~~~~~~l 745 (1179)
T TIGR02168 724 LSRQISALRKDLARLEAEVEQL 745 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.11 E-value=0.32 Score=53.41 Aligned_cols=19 Identities=11% Similarity=0.357 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13761 222 EKLKKENASYQKMLNDYEN 240 (402)
Q Consensus 222 e~l~~~n~eM~~Im~EYEk 240 (402)
.++.....++..-+.+++.
T Consensus 677 ~~l~~~l~~l~~~l~~l~~ 695 (1164)
T TIGR02169 677 QRLRERLEGLKRELSSLQS 695 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333334433333333
No 7
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.09 E-value=0.081 Score=56.05 Aligned_cols=180 Identities=18% Similarity=0.253 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhhhhhhHH-------------HHHHHHHHHhHHHHHHH
Q psy13761 216 EKDKLIEKLKKEN----------ASYQKMLNDYENTITQCVNQRENDKKQ-------------FEKYKKELEKEKEEVQL 272 (402)
Q Consensus 216 ~~~~~~e~l~~~n----------~eM~~Im~EYEktI~qlIeE~eq~k~~-------------~~~eiqkllkERDQa~a 272 (402)
.+|.+|+.+.++. ..+..-+..-.....++..+.++.++. +..++..+....+.+..
T Consensus 290 ~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~ 369 (569)
T PRK04778 290 RIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITE 369 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666665555433 233333444444444555555554444 34566667777777777
Q ss_pred HHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy13761 273 HLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEE-------LKKQVNKYDALKTHAISQ-LEKANQDLDLR 344 (402)
Q Consensus 273 DLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~r-------vkkeeQRYqALKaHAEEK-Le~ANEEIaqv 344 (402)
.++....+|+++-.+|+.+.+-++.+.+....+++.+..+... +..+......+|.+.+.. |...-+.+-..
T Consensus 370 ~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~ 449 (569)
T PRK04778 370 RIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEM 449 (569)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Confidence 7777777788888888887777777777766666666554433 333333333344333333 33444555556
Q ss_pred HHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy13761 345 NKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLS 395 (402)
Q Consensus 345 rsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~ 395 (402)
-.....++..|...|...-+-+.+.+..++.-....+.|..=++||+..+.
T Consensus 450 ~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~ 500 (569)
T PRK04778 450 FFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENAT 500 (569)
T ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888899888888889988899999999999999999987654
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=97.05 E-value=0.41 Score=52.28 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=16.5
Q ss_pred HHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHH
Q psy13761 283 DVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQ 319 (402)
Q Consensus 283 DLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkke 319 (402)
++-.++..++..+..++...+.++..+.+...++...
T Consensus 603 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 603 DAEDEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444445555555544443
No 9
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.05 E-value=0.11 Score=49.78 Aligned_cols=127 Identities=17% Similarity=0.284 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhh
Q psy13761 223 KLKKENASYQKMLNDYENTI----TQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGM 298 (402)
Q Consensus 223 ~l~~~n~eM~~Im~EYEktI----~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegy 298 (402)
.|...|..+..-+..+.... ..+-.--+..-......|..+..++.++..++.++.....|+-.+|+........+
T Consensus 22 ~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~l 101 (312)
T PF00038_consen 22 FLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDL 101 (312)
T ss_dssp HHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555554441 11111122233335677888999999999999999999999999999998888888
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy13761 299 KANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLK 360 (402)
Q Consensus 299 KkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LK 360 (402)
...-..|++.+.+........+ .++....++|+.++..|+.++..|++++.
T Consensus 102 e~el~~lrk~ld~~~~~r~~le-----------~~i~~L~eEl~fl~~~heeEi~~L~~~~~ 152 (312)
T PF00038_consen 102 EEELESLRKDLDEETLARVDLE-----------NQIQSLKEELEFLKQNHEEEIEELREQIQ 152 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHTTSTT--
T ss_pred HHHHhhhhhhhhhhhhhHhHHH-----------HHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 7777777766665554444444 44455557788888888888888777763
No 10
>PRK09039 hypothetical protein; Validated
Probab=97.03 E-value=0.18 Score=50.81 Aligned_cols=135 Identities=14% Similarity=0.185 Sum_probs=84.3
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHH
Q psy13761 242 ITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVN 321 (402)
Q Consensus 242 I~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQ 321 (402)
++.++.=........+..+..+..+.+.+.+.-.-++.+|..... -...+...+..+...+..+..
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~--------------~~~~~~~~~~~l~~~L~~~k~ 130 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAG--------------AGAAAEGRAGELAQELDSEKQ 130 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------hcchHHHHHHHHHHHHHHHHH
Confidence 444443333344445566666666666666666666665553210 001233333444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHhhHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHcc
Q psy13761 322 KYDALKTHAISQLEKANQDLDLRNKT---YEMETTKLKAMLKKSEMQITSLQESLARKTE-ENAELTSICDDLISKL 394 (402)
Q Consensus 322 RYqALKaHAEEKLe~ANEEIaqvrsk---~eaE~~aLqA~LKKeEmkv~SLEesLEQKtK-ENeELTkICDELIsK~ 394 (402)
.|. -+--++...|.+|+.++.+ .++.+.+++++.+-.+.++.+|+..|+..-. ++.||.+++++++..+
T Consensus 131 ~~s----e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l 203 (343)
T PRK09039 131 VSA----RALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRL 203 (343)
T ss_pred HHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333 2334577788888888755 4667778888888899999999999998874 4999999999997655
No 11
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.89 E-value=0.59 Score=48.09 Aligned_cols=63 Identities=11% Similarity=0.190 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHH
Q psy13761 222 EKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDV 284 (402)
Q Consensus 222 e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDL 284 (402)
..++.....+..-++.|...|..+-.........+++++..+..++.++..+++.++....++
T Consensus 184 ~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 184 QTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444333333333445555556666666655555555555555
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=96.83 E-value=0.66 Score=50.71 Aligned_cols=80 Identities=23% Similarity=0.291 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy13761 307 ARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSI 386 (402)
Q Consensus 307 k~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkI 386 (402)
+.+.++...+......+..+...+ +.+.....++..-....+.++..++..+...+.++.+++.++.+...+.+++..-
T Consensus 321 ~k~~el~~~l~~~~~~l~~~~~~~-e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~ 399 (880)
T PRK02224 321 DRDEELRDRLEECRVAAQAHNEEA-ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRER 399 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443322 2333333333333344445555555555666666666666666666666666443
Q ss_pred H
Q psy13761 387 C 387 (402)
Q Consensus 387 C 387 (402)
+
T Consensus 400 l 400 (880)
T PRK02224 400 F 400 (880)
T ss_pred H
Confidence 3
No 13
>PRK03918 chromosome segregation protein; Provisional
Probab=96.81 E-value=0.42 Score=51.91 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=17.9
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 295 IEGMKANEDHLRARHSELEEELKKQVNKYDALK 327 (402)
Q Consensus 295 IegyKkNEE~LKk~ieey~~rvkkeeQRYqALK 327 (402)
+...+..=+.+++.+.++..++....+++..|.
T Consensus 621 l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~ 653 (880)
T PRK03918 621 LKKLEEELDKAFEELAETEKRLEELRKELEELE 653 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555556666666666666664
No 14
>PRK03918 chromosome segregation protein; Provisional
Probab=96.80 E-value=1.1 Score=48.80 Aligned_cols=35 Identities=9% Similarity=0.131 Sum_probs=15.2
Q ss_pred HHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHH
Q psy13761 272 LHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLR 306 (402)
Q Consensus 272 aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LK 306 (402)
..+..+...+..+-.+|.+++..+..+...-..++
T Consensus 238 ~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~ 272 (880)
T PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELK 272 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555554444444443333333
No 15
>PRK11637 AmiB activator; Provisional
Probab=96.79 E-value=0.76 Score=46.84 Aligned_cols=39 Identities=15% Similarity=0.042 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHh
Q psy13761 252 DKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYER 290 (402)
Q Consensus 252 ~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK 290 (402)
+-...+.++..+..+.+++..+++.....|..+.+.+-+
T Consensus 97 ~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 97 TLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345666666666666666666666666665555544
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.72 E-value=0.52 Score=48.46 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTIT 243 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~ 243 (402)
+...++.+.........-+..+++...
T Consensus 186 l~~~i~~l~~~i~~~~~~i~~~~~~~~ 212 (562)
T PHA02562 186 LDMKIDHIQQQIKTYNKNIEEQRKKNG 212 (562)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444455544444444444444444333
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.57 E-value=1 Score=51.75 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy13761 350 METTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLS 395 (402)
Q Consensus 350 aE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~ 395 (402)
..+.++...+...+...+.++.++++...+..++...|+.|-..+.
T Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~ 852 (1163)
T COG1196 807 RRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELE 852 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4555555555555666666666666666666666666665544443
No 18
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.47 E-value=1.1 Score=44.59 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 219 KLIEKLKKENASYQKMLNDYENTIT 243 (402)
Q Consensus 219 ~~~e~l~~~n~eM~~Im~EYEktI~ 243 (402)
-.+.+|.+.+.+.+.++.++|..|.
T Consensus 75 ~~c~EL~~~I~egr~~~~~~E~~~~ 99 (325)
T PF08317_consen 75 FSCRELKKYISEGRQIFEEIEEETY 99 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457777777888888888887664
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.27 E-value=2.8 Score=48.27 Aligned_cols=32 Identities=31% Similarity=0.506 Sum_probs=13.0
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 296 EGMKANEDHLRARHSELEEELKKQVNKYDALK 327 (402)
Q Consensus 296 egyKkNEE~LKk~ieey~~rvkkeeQRYqALK 327 (402)
..+...-+.+...++....++..++.+...|+
T Consensus 817 ~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~ 848 (1163)
T COG1196 817 ESLEQRRERLEQEIEELEEEIEELEEKLDELE 848 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444443
No 20
>KOG0161|consensus
Probab=96.23 E-value=1.9 Score=52.53 Aligned_cols=170 Identities=24% Similarity=0.326 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH---------------------HHHHHHhHHHHHHHHHHhHHHhh
Q psy13761 223 KLKKENASYQKMLNDYENTITQCVNQRENDKKQFEK---------------------YKKELEKEKEEVQLHLRNSEIAF 281 (402)
Q Consensus 223 ~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~---------------------eiqkllkERDQa~aDLnS~EkSF 281 (402)
++.+-+.++..--..|+..+.+.+++.+..++.... ...++..|-+.+..|+...-.+.
T Consensus 1351 ~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~ 1430 (1930)
T KOG0161|consen 1351 KLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAV 1430 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344455666666666666666655554444444222 22333444455555555555555
Q ss_pred HHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Q psy13761 282 NDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKK 361 (402)
Q Consensus 282 SDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKK 361 (402)
+.|-++-.+.-.++..+|++.+.|-..+.............-+.|+.--++-++ ..+++.+..++.+.++.-|.-++.-
T Consensus 1431 ~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e-~~e~l~renk~l~~ei~dl~~~~~e 1509 (1930)
T KOG0161|consen 1431 AALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLE-QLEELRRENKNLSQEIEDLEEQKDE 1509 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566677777777777777777777666666666666644444444 6677777777777777777777777
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy13761 362 SEMQITSLQESLARKTEENAELTSICDDLISK 393 (402)
Q Consensus 362 eEmkv~SLEesLEQKtKENeELTkICDELIsK 393 (402)
..-.++.|+..+.....++.||..=-+|+=..
T Consensus 1510 ~~k~v~elek~~r~le~e~~elQ~aLeElE~~ 1541 (1930)
T KOG0161|consen 1510 GGKRVHELEKEKRRLEQEKEELQAALEELEAA 1541 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888887777777777777766666543
No 21
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.21 E-value=2.2 Score=50.83 Aligned_cols=168 Identities=11% Similarity=0.170 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH---------HHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHH
Q psy13761 219 KLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQF---------EKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYE 289 (402)
Q Consensus 219 ~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~---------~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYE 289 (402)
+++++.+....+|..++.+-+.-+..|-.+.+...+-. ..++..+..+.+.+...+.+.+.....+-..+.
T Consensus 300 kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeele 379 (1486)
T PRK04863 300 RQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQE 379 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556777777788888877777765554433221 122222333333333333333333333333333
Q ss_pred hhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhHHHHHHHHHHh
Q psy13761 290 RSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKAN----------QDLDLRNKTYEMETTKLKAML 359 (402)
Q Consensus 290 K~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~AN----------EEIaqvrsk~eaE~~aLqA~L 359 (402)
.+..-+.....--..++..+.++...+...+++..++.. +-..++.|+ +++.....++.+.+..++..+
T Consensus 380 eleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq-~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL 458 (1486)
T PRK04863 380 ENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQ-AVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEEL 458 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344555555555555555555544432 224444443 566777788888888888888
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy13761 360 KKSEMQITSLQESLARKTEENAELTSIC 387 (402)
Q Consensus 360 KKeEmkv~SLEesLEQKtKENeELTkIC 387 (402)
...+.+..+++..+++..+....+.++.
T Consensus 459 ~elE~kL~~lea~leql~~~~~~l~~~~ 486 (1486)
T PRK04863 459 LSLEQKLSVAQAAHSQFEQAYQLVRKIA 486 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888888888888888887777776654
No 22
>KOG0996|consensus
Probab=96.20 E-value=0.75 Score=53.47 Aligned_cols=171 Identities=20% Similarity=0.253 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHH---HHHHHhhHH
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDV---HLKYERSKV 293 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDL---hrRYEK~Ke 293 (402)
+...+++.+....+|..++.++...|.+|=...+ ....+++.+...-.++...+..+|+...-. -++..-.++
T Consensus 790 ~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~----~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~ 865 (1293)
T KOG0996|consen 790 MSDKARQHQEQLHELEERVRKLRERIPELENRLE----KLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEE 865 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHH
Confidence 4444455556666777777777776666544333 334444555555555555555555552110 111222233
Q ss_pred HHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhH
Q psy13761 294 IIEGMKANEDHLRARHSELEEELKKQVNKYDALKTH----AISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSL 369 (402)
Q Consensus 294 vIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaH----AEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SL 369 (402)
.|+.+++--+.+-+...- .++++..+..++.+-.+ -..+++.+++.|+.+ .+++..+++.++...-.++..
T Consensus 866 ~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l----~~~i~k~~~~i~~s~~~i~k~ 940 (1293)
T KOG0996|consen 866 QIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKL----EADIAKLTVAIKTSDRNIAKA 940 (1293)
T ss_pred HHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHH----HHHHHHhHHHHhcCcccHHHH
Confidence 344444433333111110 23444444444333221 235677777777665 466888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccc
Q psy13761 370 QESLARKTEENAELTSICDDLISKLSS 396 (402)
Q Consensus 370 EesLEQKtKENeELTkICDELIsK~~~ 396 (402)
+..+...+++++.+..=||.|+..+.+
T Consensus 941 q~~l~~le~~~~~~e~e~~~L~e~~~~ 967 (1293)
T KOG0996|consen 941 QKKLSELEREIEDTEKELDDLTEELKG 967 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999877643
No 23
>KOG0250|consensus
Probab=96.17 E-value=1.2 Score=51.49 Aligned_cols=171 Identities=16% Similarity=0.217 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhh---HHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhH
Q psy13761 226 KENASYQKMLNDYENTITQCVNQRENDK---KQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANE 302 (402)
Q Consensus 226 ~~n~eM~~Im~EYEktI~qlIeE~eq~k---~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNE 302 (402)
..+.....-++.+...|.........-. ...+++++.+..|-+.--.++..+-+++-++-+.|..++.-+.....|-
T Consensus 288 ~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i 367 (1074)
T KOG0250|consen 288 EEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSI 367 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455566555555443333222 3456777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHhhH-------HHHHHhh
Q psy13761 303 DHLRARHSELEEELKKQVNKY----DALKTHAISQLEKANQDLDLRNK---TYEMETTKLKAMLKK-------SEMQITS 368 (402)
Q Consensus 303 E~LKk~ieey~~rvkkeeQRY----qALKaHAEEKLe~ANEEIaqvrs---k~eaE~~aLqA~LKK-------eEmkv~S 368 (402)
..+|+|+..+...|...+... +......+.+++..+.+++.++. +...+.-.++-.++. .+-.+.+
T Consensus 368 ~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~ 447 (1074)
T KOG0250|consen 368 RKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQ 447 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 888888888887777665555 33444555555554444443332 222233233322322 3345566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccc
Q psy13761 369 LQESLARKTEENAELTSICDDLISKLSS 396 (402)
Q Consensus 369 LEesLEQKtKENeELTkICDELIsK~~~ 396 (402)
|.+++++.+.+...|-+-=++=++..|.
T Consensus 448 l~k~i~~~~~~l~~lk~~k~dkvs~FG~ 475 (1074)
T KOG0250|consen 448 LRKKIENISEELKDLKKTKTDKVSAFGP 475 (1074)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhhcch
Confidence 7778888888888777766666666654
No 24
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.06 E-value=1.3 Score=41.64 Aligned_cols=145 Identities=22% Similarity=0.310 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhH
Q psy13761 220 LIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMK 299 (402)
Q Consensus 220 ~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyK 299 (402)
.|..|+.+..+|++-....++.++.+..+ .+.+.+.+.++..+++.+..+|. -|++-|..+.+.+
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~e----N~~L~epL~~a~~e~~eL~k~L~-----------~y~kdK~~L~~~k 92 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQE----NKRLSEPLKKAEEEVEELRKQLK-----------NYEKDKQSLQNLK 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 34666777788888777777766655444 44556667777777777777765 3666666666766
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHH
Q psy13761 300 ANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEE 379 (402)
Q Consensus 300 kNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKE 379 (402)
..-..+.+.+.++.-..+-.+|||..|..-=.+-..+-+.-|-+|..+..-...-| |-++..|.+.|+++..+
T Consensus 93 ~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lL-------EkKl~~l~~~lE~keaq 165 (201)
T PF13851_consen 93 ARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLL-------EKKLQALSEQLEKKEAQ 165 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 66666777777777777777777777776666666666666666666654444444 34555666667777776
Q ss_pred HHHHHHH
Q psy13761 380 NAELTSI 386 (402)
Q Consensus 380 NeELTkI 386 (402)
..|+..-
T Consensus 166 L~evl~~ 172 (201)
T PF13851_consen 166 LNEVLAA 172 (201)
T ss_pred HHHHHHH
Confidence 6665543
No 25
>KOG0161|consensus
Probab=95.99 E-value=2.4 Score=51.86 Aligned_cols=144 Identities=22% Similarity=0.281 Sum_probs=107.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhh-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 252 DKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGM-KANEDHLRARHSELEEELKKQVNKYDALKTHA 330 (402)
Q Consensus 252 ~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegy-KkNEE~LKk~ieey~~rvkkeeQRYqALKaHA 330 (402)
.+......+.++..|.+++...+..=....++|++..-+...-+..+ ++=++....++++..+..++..+|-+++..+
T Consensus 1316 ~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~- 1394 (1930)
T KOG0161|consen 1316 EKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQ- 1394 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-
Confidence 34445667777888888888887777777777777777665444444 4445555556888888888888888876643
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q psy13761 331 ISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSS 396 (402)
Q Consensus 331 EEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~~ 396 (402)
.+-.+.++..+...+...+.|+..++..+.+.-..+..|++.+.+-.+-..|..++|++|...++.
T Consensus 1395 ~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~ 1460 (1930)
T KOG0161|consen 1395 IEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDA 1460 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455566666677788889999999998888889999999999999999999999999876654
No 26
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.82 E-value=2.4 Score=47.02 Aligned_cols=153 Identities=16% Similarity=0.194 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHH
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCV----------NQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHL 286 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlI----------eE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhr 286 (402)
|.+-+++|+.+.+.|+.+=.|+...|..+. ...+++.+.++..++.+..-|.+=...|.++|+-..+.-+
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~ 502 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERR 502 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667788888888887777766655554 4466666667888888888888888889999999888743
Q ss_pred HHHhhHHHHHhhHhhHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy13761 287 KYERSKVIIEGMKANEDHLR-------------------ARHSELEEELKKQVNKYDALKTH---AISQLEKANQDLDLR 344 (402)
Q Consensus 287 RYEK~KevIegyKkNEE~LK-------------------k~ieey~~rvkkeeQRYqALKaH---AEEKLe~ANEEIaqv 344 (402)
.|..+|---.+|.+-| .|.+-+..|.+.++..+..|+.- .++.+..+-.++.++
T Consensus 503 ----~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 503 ----QRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred ----HHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555444444333 35555667777788888777754 466677777777655
Q ss_pred HHh---hHHHHHHHHHHhhHHHHHHhhHHHHH
Q psy13761 345 NKT---YEMETTKLKAMLKKSEMQITSLQESL 373 (402)
Q Consensus 345 rsk---~eaE~~aLqA~LKKeEmkv~SLEesL 373 (402)
+.- .+.++..|-.-|.-+|-|..-||.+|
T Consensus 579 r~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 579 RKYEKESEKDTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 543 24455555555555555544444433
No 27
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.80 E-value=3.2 Score=48.32 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=49.9
Q ss_pred hhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13761 280 AFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTY 348 (402)
Q Consensus 280 SFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~ 348 (402)
...+|=.+.+.++.-+..++.....++..+......+.+...+|..++.....+...+..++..+....
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKV 950 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666777777777777777778888888888888888888888777777777665543
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.79 E-value=2.3 Score=46.13 Aligned_cols=93 Identities=23% Similarity=0.230 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHH
Q psy13761 216 EKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVII 295 (402)
Q Consensus 216 ~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevI 295 (402)
.+...+++.++++.++.+....-++...+ ...++.++..+..+.......+..-+-++....+.++.=.
T Consensus 140 ~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~-----------l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~ 208 (546)
T PF07888_consen 140 LLQNQLEECQKEKEELLKENEQLEEEVEQ-----------LREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEER 208 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666665555554444422 3444455555555555555555555555555555555444
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHH
Q psy13761 296 EGMKANEDHLRARHSELEEELKKQ 319 (402)
Q Consensus 296 egyKkNEE~LKk~ieey~~rvkke 319 (402)
+.++...+.++..|.++...+...
T Consensus 209 ~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 209 ESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333333333344343333333
No 29
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.73 E-value=3.6 Score=44.00 Aligned_cols=169 Identities=16% Similarity=0.236 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHH-------------HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHH
Q psy13761 227 ENASYQKMLNDYENTITQCVNQRENDKKQ-------------FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKV 293 (402)
Q Consensus 227 ~n~eM~~Im~EYEktI~qlIeE~eq~k~~-------------~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~Ke 293 (402)
....+..-+........++..+..+.++. +..++..+...-+.+...++.-..+||.+..+++.+.+
T Consensus 307 ~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~ 386 (560)
T PF06160_consen 307 NLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEE 386 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 33444555555555566666666655554 45677778888888888888888999999999988888
Q ss_pred HHHhhHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-----HHHHHHHHhhHHHHHHHHHHhhHHHHH
Q psy13761 294 IIEGMKANEDHLRARHSELEEELKKQVNK---YDALKTHAISQLEKAN-----QDLDLRNKTYEMETTKLKAMLKKSEMQ 365 (402)
Q Consensus 294 vIegyKkNEE~LKk~ieey~~rvkkeeQR---YqALKaHAEEKLe~AN-----EEIaqvrsk~eaE~~aLqA~LKKeEmk 365 (402)
-+..+.+.-..+...++.+...-..-.++ |+.--......|++.| +.+-..-.....++..|...|.+.-+-
T Consensus 387 ~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pin 466 (560)
T PF06160_consen 387 QLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPIN 466 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 88877777776666665544332222222 2222222233333333 566666666677777788888888888
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy13761 366 ITSLQESLARKTEENAELTSICDDLISKLS 395 (402)
Q Consensus 366 v~SLEesLEQKtKENeELTkICDELIsK~~ 395 (402)
+.-+...|+.-+...+.|..--++||....
T Consensus 467 m~~v~~~l~~a~~~v~~L~~~t~~li~~A~ 496 (560)
T PF06160_consen 467 MDEVNKQLEEAEDDVETLEEKTEELIDNAT 496 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888876543
No 30
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.69 E-value=1.7 Score=47.26 Aligned_cols=118 Identities=18% Similarity=0.233 Sum_probs=62.6
Q ss_pred HHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 260 KKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQ 339 (402)
Q Consensus 260 iqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANE 339 (402)
+.++..+..+.......+|..+. ..+|..+++.+=-.|=+.|..-++.-..++....+..+..+.--.+++.....
T Consensus 358 ~~q~~~e~~~~~~~~~~le~~~~----l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~ 433 (594)
T PF05667_consen 358 LKQLEEELEEKEAENEELEEELK----LKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKE 433 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444444444444444444433 34555566666667777777777777777777777777766655555544443
Q ss_pred HHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy13761 340 DLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTS 385 (402)
Q Consensus 340 EIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTk 385 (402)
... .+..+....-..+|....++..+...+.+|.....+|.+
T Consensus 434 ~~~----~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~ 475 (594)
T PF05667_consen 434 KAS----NRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVK 475 (594)
T ss_pred HHh----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 222333333344444444444444444444444444433
No 31
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.61 E-value=1.4 Score=47.69 Aligned_cols=102 Identities=15% Similarity=0.194 Sum_probs=49.5
Q ss_pred HHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhH----
Q psy13761 294 IIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSL---- 369 (402)
Q Consensus 294 vIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SL---- 369 (402)
+|.+++.+...+...+.++..++...--+..++++.-.+--.....|+.++...+..+...+++.....+-++..+
T Consensus 289 ~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~ 368 (754)
T TIGR01005 289 LIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAAS 368 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443322222233333333322223344455555555555554444443333333333
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHccc
Q psy13761 370 ------QESLARKTEENAELTSICDDLISKLS 395 (402)
Q Consensus 370 ------EesLEQKtKENeELTkICDELIsK~~ 395 (402)
+.++.+..++.+-...+.+.|+.+.+
T Consensus 369 ~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~ 400 (754)
T TIGR01005 369 AQAGEQQVDLDALQRDAAAKRQLYESYLTNYR 400 (754)
T ss_pred HhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777777654
No 32
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.56 E-value=2.4 Score=40.82 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy13761 334 LEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSI 386 (402)
Q Consensus 334 Le~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkI 386 (402)
.......|..+...+..+...+++.+...+..+..+...+.+..+|+++|..+
T Consensus 239 ~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~ 291 (312)
T PF00038_consen 239 NASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDV 291 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666677777777777777777777777777777777777777777543
No 33
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.51 E-value=6.6 Score=45.58 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=80.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHH-----------HHhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 256 FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVI-----------IEGMKANEDHLRARHSELEEELKKQVNKYD 324 (402)
Q Consensus 256 ~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~Kev-----------IegyKkNEE~LKk~ieey~~rvkkeeQRYq 324 (402)
..+....+..+++.+.+++...+.....+..+|...-.. ...|+.-=+.++..+..+...+...+++|.
T Consensus 304 ~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~ 383 (1201)
T PF12128_consen 304 IKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYN 383 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667778888888888888888877776655321 223444445555666666666777777777
Q ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHhhHHHHHHHHHHhh-HHHHHHhhHHHHHHHHHHHHHHH
Q psy13761 325 ALKTHAISQ-----------LEKANQDLDLRNKTYEMETTKLKAMLK-KSEMQITSLQESLARKTEENAEL 383 (402)
Q Consensus 325 ALKaHAEEK-----------Le~ANEEIaqvrsk~eaE~~aLqA~LK-KeEmkv~SLEesLEQKtKENeEL 383 (402)
.++..++.. ++.+.+++++.+..+.+...++...++ ..+.....+..+..+...+..+|
T Consensus 384 ~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 454 (1201)
T PF12128_consen 384 KLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAEL 454 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777765544 445566666667777777777777776 44445555555555555554444
No 34
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.39 E-value=4.1 Score=45.81 Aligned_cols=147 Identities=19% Similarity=0.256 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHH
Q psy13761 233 KMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSEL 312 (402)
Q Consensus 233 ~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey 312 (402)
..+.++++.+..+=+...+..+....++.....+...+...+.++++-.+|.---.+-+|+-+..+..|=++-...+..+
T Consensus 440 ea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l 519 (775)
T PF10174_consen 440 EALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERL 519 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHH
Confidence 55666777776665444333444455666677777777777777777777666666666776666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHH
Q psy13761 313 EEELKKQVNKYDALKTHAIS------------QLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEE 379 (402)
Q Consensus 313 ~~rvkkeeQRYqALKaHAEE------------KLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKE 379 (402)
.-.+.+...++..|..-... .|+.-...+..-..++++|+-.|...|++.++...+++..+.+..++
T Consensus 520 ~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~Leke 598 (775)
T PF10174_consen 520 EIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKE 598 (775)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 66666666777666655443 23333333444455556666666666666666665554444444443
No 35
>KOG0995|consensus
Probab=95.38 E-value=5.4 Score=43.67 Aligned_cols=84 Identities=24% Similarity=0.298 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHH-HHH
Q psy13761 309 HSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELT-SIC 387 (402)
Q Consensus 309 ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELT-kIC 387 (402)
+..+..++.+.+.+|+..|..|++....+..||+.+..+-.++-+.+..+++..+-.++|.+..+++..+..+|=. +|.
T Consensus 462 l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~ 541 (581)
T KOG0995|consen 462 LGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRMVATGEEERQKIA 541 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667788889999999999999999999999999999999999999999999999999998888877755433 333
Q ss_pred HHHHH
Q psy13761 388 DDLIS 392 (402)
Q Consensus 388 DELIs 392 (402)
-+|+.
T Consensus 542 ~ql~~ 546 (581)
T KOG0995|consen 542 KQLFA 546 (581)
T ss_pred HHHHH
Confidence 44443
No 36
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.28 E-value=3.3 Score=40.68 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=33.2
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhh
Q psy13761 257 EKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKAN 301 (402)
Q Consensus 257 ~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkN 301 (402)
..++..+..|-+.+....++++....+|+.+++++..-+.+.+.-
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~ 132 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKER 132 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888888888888887777666664333
No 37
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.27 E-value=3.3 Score=40.57 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=14.3
Q ss_pred HHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHH
Q psy13761 259 YKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKV 293 (402)
Q Consensus 259 eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~Ke 293 (402)
++..+..+..++.+.+...+......-+.|.+.+.
T Consensus 152 ~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~ 186 (423)
T TIGR01843 152 QIKQLEAELAGLQAQLQALRQQLEVISEELEARRK 186 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444433
No 38
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.23 E-value=2.7 Score=41.68 Aligned_cols=127 Identities=18% Similarity=0.226 Sum_probs=74.2
Q ss_pred HHhHHHHHHHHHHhHHHh----hHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 263 LEKEKEEVQLHLRNSEIA----FNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKAN 338 (402)
Q Consensus 263 llkERDQa~aDLnS~EkS----FSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~AN 338 (402)
|.+-+.++..+..++|.+ -..|..+|+++..++.-+..+ -++.+++....+..|+.+...=-..-+.+++..|
T Consensus 18 L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~---~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~ 94 (258)
T PF15397_consen 18 LTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYS---NHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLD 94 (258)
T ss_pred HHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHcc---ChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455555555555555554 467889999999998876655 3444555666666666665554444444444444
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhHH----HHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHcccc
Q psy13761 339 QDLDLRNKTYEMETTKLKAMLKKS----EMQITSLQESLARKT----EENAELTSICDDLISKLSS 396 (402)
Q Consensus 339 EEIaqvrsk~eaE~~aLqA~LKKe----Emkv~SLEesLEQKt----KENeELTkICDELIsK~~~ 396 (402)
..|... +.|+..|..=--++ -|+|..|.++|+|.. .|.+||..||--...+|..
T Consensus 95 akI~k~----~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~ 156 (258)
T PF15397_consen 95 AKIQKT----QEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSR 156 (258)
T ss_pred HHHHHH----HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444332 23333333222111 245666666666654 4678888888877776654
No 39
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.21 E-value=2.8 Score=39.49 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQREN 251 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq 251 (402)
++..+..+++....+.+.|.+...-...|.+-.++
T Consensus 32 LKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~ 66 (201)
T PF13851_consen 32 LKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKK 66 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 66666777776666777777766666666554443
No 40
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.15 E-value=3.1 Score=39.58 Aligned_cols=112 Identities=22% Similarity=0.298 Sum_probs=52.4
Q ss_pred HHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 263 LEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLD 342 (402)
Q Consensus 263 llkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIa 342 (402)
+...-..+...+..++.-|.++.+|+.-+-.-++..-..=+.+-.++.++...|....+... .|+.+-+...
T Consensus 97 lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk--------~lE~~~~~~~ 168 (237)
T PF00261_consen 97 LEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK--------SLEASEEKAS 168 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH--------Hhhhhhhhhh
Confidence 33333333333333444444444443333333333333333333444444444444433333 3444444444
Q ss_pred HHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q psy13761 343 LRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAE 382 (402)
Q Consensus 343 qvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeE 382 (402)
+-...++..+..|...|+..+.+....++.+.+..++++.
T Consensus 169 ~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~ 208 (237)
T PF00261_consen 169 EREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDR 208 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666666666666655555555443
No 41
>KOG1029|consensus
Probab=95.05 E-value=2.2 Score=48.42 Aligned_cols=135 Identities=19% Similarity=0.310 Sum_probs=93.1
Q ss_pred HHHHhhhhhhhhHH---HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHH
Q psy13761 242 ITQCVNQRENDKKQ---FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKK 318 (402)
Q Consensus 242 I~qlIeE~eq~k~~---~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkk 318 (402)
+++|...+.++++. .++....+..|...+...+..++--.-|+-.+--++|++|++..+--+.....+.++.++|++
T Consensus 418 ~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE 497 (1118)
T KOG1029|consen 418 RQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKE 497 (1118)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 45555555544443 244555566677777777777888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHhhHHHHHHhhHHHHHHHHHHHH
Q psy13761 319 QVNKYDALKTHAISQLEKANQDLDLRNKTYEME---TTKLKAMLKKSEMQITSLQESLARKTEEN 380 (402)
Q Consensus 319 eeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE---~~aLqA~LKKeEmkv~SLEesLEQKtKEN 380 (402)
++++.+.|--. -...|..+-++.+.|..+ ..-|.|..++-+.-++.++.+|+...||.
T Consensus 498 ~q~kl~~l~~E----kq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~ 558 (1118)
T KOG1029|consen 498 LQEKLQKLAPE----KQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKET 558 (1118)
T ss_pred HHHHHHhhhhH----HHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887766422 123455555555555433 34566666666666667777776666654
No 42
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.99 E-value=5.1 Score=46.71 Aligned_cols=45 Identities=20% Similarity=0.160 Sum_probs=29.2
Q ss_pred HHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy13761 351 ETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLS 395 (402)
Q Consensus 351 E~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~ 395 (402)
++..++.........+..|+...++..+...++..+|.+|-.+.+
T Consensus 334 el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1311)
T TIGR00606 334 ERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLE 378 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345555555555566666666667777777777777777766554
No 43
>KOG0996|consensus
Probab=94.96 E-value=4.1 Score=47.82 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHH
Q psy13761 255 QFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKY 288 (402)
Q Consensus 255 ~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRY 288 (402)
.+..++++...|-+++..-+...+....|.-..|
T Consensus 437 ~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l 470 (1293)
T KOG0996|consen 437 KARIEIQKCQTEIEQLEELLEKEERELDEILDSL 470 (1293)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555544444444444333
No 44
>KOG1029|consensus
Probab=94.71 E-value=9 Score=43.79 Aligned_cols=154 Identities=18% Similarity=0.221 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhh
Q psy13761 219 KLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGM 298 (402)
Q Consensus 219 ~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegy 298 (402)
.-|++-+.+....+.+|.+-++-=..-.+.+++.... .++..+...||.+- -+|-++.||+|++ +-
T Consensus 320 eNy~kGqaELerRRq~leeqqqreree~eqkEreE~e-kkererqEqErk~q-----------lElekqLerQRei-E~- 385 (1118)
T KOG1029|consen 320 ENYEKGQAELERRRQALEEQQQREREEVEQKEREEEE-KKERERQEQERKAQ-----------LELEKQLERQREI-ER- 385 (1118)
T ss_pred HhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-----------HHHHHHHHHHHHH-HH-
Confidence 3456666676677777776655444433333332222 22223333343322 3467888999984 43
Q ss_pred HhhHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHH
Q psy13761 299 KANEDHLRARHSELEEELKKQ-VNKYDAL-KTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARK 376 (402)
Q Consensus 299 KkNEE~LKk~ieey~~rvkke-eQRYqAL-KaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQK 376 (402)
.-||-=|+.++..+++-++. .||-..+ ++.-.+-+++-|.| +..+..++|.++-.+.++..|+..+.|.
T Consensus 386 -qrEEerkkeie~rEaar~ElEkqRqlewErar~qem~~Qk~re--------qe~iv~~nak~~ql~~eletLn~k~qql 456 (1118)
T KOG1029|consen 386 -QREEERKKEIERREAAREELEKQRQLEWERARRQEMLNQKNRE--------QEWIVYLNAKKKQLQQELETLNFKLQQL 456 (1118)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555567777666655544 3443333 33333333444433 3444556666666666666666666554
Q ss_pred --------------HHHHHHHHHHHHHHHHccc
Q psy13761 377 --------------TEENAELTSICDDLISKLS 395 (402)
Q Consensus 377 --------------tKENeELTkICDELIsK~~ 395 (402)
..+++++++-||--|+.+.
T Consensus 457 s~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~ 489 (1118)
T KOG1029|consen 457 SGKLQDVRVDITTQKTEIEEVTKQRELMISEID 489 (1118)
T ss_pred hhhhhhheeccchHHHHHHHhhhHHHHHHHHHH
Confidence 3578999999998888764
No 45
>PRK01156 chromosome segregation protein; Provisional
Probab=94.67 E-value=8.8 Score=42.49 Aligned_cols=23 Identities=4% Similarity=0.089 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 305 LRARHSELEEELKKQVNKYDALK 327 (402)
Q Consensus 305 LKk~ieey~~rvkkeeQRYqALK 327 (402)
++..+.+....+.....+...++
T Consensus 641 ~~~~i~~~~~~i~~l~~~i~~l~ 663 (895)
T PRK01156 641 NKILIEKLRGKIDNYKKQIAEID 663 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555553
No 46
>KOG0250|consensus
Probab=94.59 E-value=12 Score=43.68 Aligned_cols=142 Identities=22% Similarity=0.291 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhhh---hhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHH
Q psy13761 235 LNDYENTITQCVNQ---RENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSE 311 (402)
Q Consensus 235 m~EYEktI~qlIeE---~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~iee 311 (402)
|-++++-....++. .+.....+++++.+.......++..++++|+....+-.--+-++.=|.++++-=..++..+.+
T Consensus 276 V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~ 355 (1074)
T KOG0250|consen 276 VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVND 355 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44555544444433 233344456777777777778888888999988888776666666666666655556655555
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHH
Q psy13761 312 LEEELKKQVNKYDALKTHA---ISQLEKAN----QDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARK 376 (402)
Q Consensus 312 y~~rvkkeeQRYqALKaHA---EEKLe~AN----EEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQK 376 (402)
....+..-++.++++|.-- +.+|..++ .+...-+.+.+.++.-|+-.+.+.|-.+.||...++.-
T Consensus 356 ~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 356 LKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554321 11222222 22222333334444555555666666666665555443
No 47
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.47 E-value=3.1 Score=36.40 Aligned_cols=101 Identities=19% Similarity=0.173 Sum_probs=53.5
Q ss_pred hHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHh
Q psy13761 291 SKVIIEGMKANEDHLRARHSELEEELKKQVNKYD-ALKTHAI--SQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQIT 367 (402)
Q Consensus 291 ~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYq-ALKaHAE--EKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~ 367 (402)
++..+..|......++.-+.........-+++|+ .|..||+ +.|..+..++..++.....=-....+.-....-.-.
T Consensus 15 ~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~ 94 (132)
T PF07926_consen 15 LKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEA 94 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666667777776 3555554 344444444444443322222222222222222333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 368 SLQESLARKTEENAELTSICDDLI 391 (402)
Q Consensus 368 SLEesLEQKtKENeELTkICDELI 391 (402)
|.+.+-.+..+++.++.+=||||-
T Consensus 95 sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 95 SWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566777777777777774
No 48
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.40 E-value=2.6 Score=46.74 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy13761 368 SLQESLARKTEENAELT 384 (402)
Q Consensus 368 SLEesLEQKtKENeELT 384 (402)
+....|.|-..++++|.
T Consensus 689 ~I~~iL~~~~~~I~~~v 705 (717)
T PF10168_consen 689 TIKEILKQQGEEIDELV 705 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.39 E-value=5.1 Score=46.45 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy13761 331 ISQLEKANQDLDLRNKTYEMETTKLKAMLKK-SEMQITSLQESLARKTEENAELTSICDDLISK 393 (402)
Q Consensus 331 EEKLe~ANEEIaqvrsk~eaE~~aLqA~LKK-eEmkv~SLEesLEQKtKENeELTkICDELIsK 393 (402)
+..+...++++......++.....++..++. .+-....+...+++..++.++.+.-+++-+..
T Consensus 691 ~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~ 754 (1201)
T PF12128_consen 691 EEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKE 754 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444432222 22223334444444444444444444444433
No 50
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.37 E-value=2.5 Score=42.04 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=16.2
Q ss_pred HHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy13761 352 TTKLKAMLKKSEMQITSLQESLARKTEENAELTSICD 388 (402)
Q Consensus 352 ~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICD 388 (402)
+..|+..+...+.++..+.....+-..++.++.++|+
T Consensus 232 l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 232 LAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443
No 51
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.22 E-value=12 Score=42.26 Aligned_cols=107 Identities=16% Similarity=0.222 Sum_probs=56.0
Q ss_pred HHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Q psy13761 273 HLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYD-----ALKTHAISQLEKANQDLDLRNKT 347 (402)
Q Consensus 273 DLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYq-----ALKaHAEEKLe~ANEEIaqvrsk 347 (402)
+++.+-.-.+||...|++...-|.-+++.-+.|-..+.+=...+.....|.. .=-..|-+.|+.|+.+.+.++..
T Consensus 372 E~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~ 451 (775)
T PF10174_consen 372 EKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQER 451 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344455555555444444444444444444444444444444443 11123346666666665555443
Q ss_pred -----------hHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHH
Q psy13761 348 -----------YEMETTKLKAMLKKSEMQITSLQESLARKTEE 379 (402)
Q Consensus 348 -----------~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKE 379 (402)
...++..++..++...+++.+|+..|..++=.
T Consensus 452 l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~ 494 (775)
T PF10174_consen 452 LEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQ 494 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34566677777777777777777777666633
No 52
>KOG4643|consensus
Probab=94.20 E-value=15 Score=43.04 Aligned_cols=167 Identities=15% Similarity=0.096 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH------HHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHH
Q psy13761 216 EKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQF------EKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYE 289 (402)
Q Consensus 216 ~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~------~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYE 289 (402)
.+-.+++.|...+.+|.+-.++.|..-..++.|.++-.+.. -..-+....+.||+..+..-++..+..++.+.+
T Consensus 412 nLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ik 491 (1195)
T KOG4643|consen 412 NLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIK 491 (1195)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667788888888888888888888888887766543331 122244666778888888888888888888888
Q ss_pred hhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH---HH
Q psy13761 290 RSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEM---QI 366 (402)
Q Consensus 290 K~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEm---kv 366 (402)
+++..+.+=..-=..|-....+...-+++..--|..++.|+ ++|.+.....+.|-+-|.-++-..-. +.
T Consensus 492 nlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~--------eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~ 563 (1195)
T KOG4643|consen 492 NLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKL--------EELEELLGNLEEENAHLLKQIQSLKTTSQNG 563 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhHHHHHHHHHHHHHHHHHHhHHH
Confidence 88777766433333333333333333333333333333332 34555555555555444443333322 34
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 367 TSLQESLARKTEENAELTSICDDL 390 (402)
Q Consensus 367 ~SLEesLEQKtKENeELTkICDEL 390 (402)
.-|+.....+...+.||-+.-|-|
T Consensus 564 ~~LEq~~n~lE~~~~elkk~idaL 587 (1195)
T KOG4643|consen 564 ALLEQNNNDLELIHNELKKYIDAL 587 (1195)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544
No 53
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.14 E-value=8.6 Score=45.44 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13761 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQ 248 (402)
Q Consensus 215 ~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE 248 (402)
+.+...++.+.+....+..|...|......+...
T Consensus 233 ~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~ 266 (1353)
T TIGR02680 233 DEYRDELERLEALERALRNFLQRYRRYARTMLRR 266 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888888888888766655444
No 54
>KOG0018|consensus
Probab=94.07 E-value=5.4 Score=46.44 Aligned_cols=99 Identities=23% Similarity=0.359 Sum_probs=61.8
Q ss_pred HHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Q psy13761 282 NDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKK 361 (402)
Q Consensus 282 SDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKK 361 (402)
+|.-+|+|+.+..+++...--+.+++..+-+...+... ...+. |. .++.+.++.|+..++.. +..|.-.+.+
T Consensus 803 ~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-k~--k~~~~~~~~e~~e~~k~----~~~~~~~~tk 874 (1141)
T KOG0018|consen 803 KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-KN--KSKFEKKEDEINEVKKI----LRRLVKELTK 874 (1141)
T ss_pred ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-HH--HHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 56666666666655444444344444333333333333 11111 22 45556666666665544 5566777888
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy13761 362 SEMQITSLQESLARKTEENAELTSICD 388 (402)
Q Consensus 362 eEmkv~SLEesLEQKtKENeELTkICD 388 (402)
..-.+.|++..++++.-|...|+.-|-
T Consensus 875 l~~~i~~~es~ie~~~~er~~lL~~ck 901 (1141)
T KOG0018|consen 875 LDKEITSIESKIERKESERHNLLSKCK 901 (1141)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999884
No 55
>KOG4674|consensus
Probab=93.89 E-value=10 Score=46.40 Aligned_cols=122 Identities=18% Similarity=0.259 Sum_probs=87.8
Q ss_pred HHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q psy13761 260 KKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHA---ISQLEK 336 (402)
Q Consensus 260 iqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHA---EEKLe~ 336 (402)
+..+..+...+...|.+.-++-.++-.| .-++..|.-. +..+....+|...+|-.|+ ...|..
T Consensus 138 le~l~~~n~~l~~ql~ss~~~~~e~e~r-------~~e~~s~~vs-------~q~k~~rl~QEksll~s~~~wL~~eL~~ 203 (1822)
T KOG4674|consen 138 LEALESENKDLNDQLKSSTKTLSELEAR-------LQETQSEDVS-------SQLKEERLEQEKSLLESENKWLSRELSK 203 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4444444444444444444444444332 2233333222 4555666777777776654 789999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy13761 337 ANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLS 395 (402)
Q Consensus 337 ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~ 395 (402)
.|+++..+++.|..++.-|+..|....-.+..+++......+.|.||++--.++...+.
T Consensus 204 ~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls 262 (1822)
T KOG4674|consen 204 VNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELS 262 (1822)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997666655543
No 56
>KOG4674|consensus
Probab=93.87 E-value=13 Score=45.61 Aligned_cols=119 Identities=20% Similarity=0.253 Sum_probs=61.9
Q ss_pred HHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 271 QLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKK-------QVNKYDALKTHAISQLEKANQDLDL 343 (402)
Q Consensus 271 ~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkk-------eeQRYqALKaHAEEKLe~ANEEIaq 343 (402)
.+++-....+|.+++..|.++.+-++.++--=+-+...+....++++. +...|+ |+...+...+++++.
T Consensus 376 ~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e----~~~~~~~~l~~el~~ 451 (1822)
T KOG4674|consen 376 ASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELE----RMQETKAELSEELDF 451 (1822)
T ss_pred HHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 456667778999999999999888877766555555555555554443 233332 333333333444333
Q ss_pred HHHh---hHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy13761 344 RNKT---YEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISK 393 (402)
Q Consensus 344 vrsk---~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK 393 (402)
..++ .++++..|.+.++..+.++.-|..++.-+.+++-=|-.=||+++.-
T Consensus 452 ~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~ 504 (1822)
T KOG4674|consen 452 SNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKG 504 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3322 2333444444444444444444444444444443344444544443
No 57
>KOG0964|consensus
Probab=93.48 E-value=19 Score=42.05 Aligned_cols=128 Identities=20% Similarity=0.245 Sum_probs=95.8
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHhhHHHH--------------------HHHHhhHHHHHhhHhhHHHHHHHHHHHHHHH
Q psy13761 257 EKYKKELEKEKEEVQLHLRNSEIAFNDVH--------------------LKYERSKVIIEGMKANEDHLRARHSELEEEL 316 (402)
Q Consensus 257 ~~eiqkllkERDQa~aDLnS~EkSFSDLh--------------------rRYEK~KevIegyKkNEE~LKk~ieey~~rv 316 (402)
.-....+..+-+.....|+.++..-.||+ .-|++++..|.+-+.++..|.+.+.+....+
T Consensus 348 ~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l 427 (1200)
T KOG0964|consen 348 EPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESEL 427 (1200)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 44567788888888899999998666665 4588999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHhhH---HHHHHhhHHHHHHHHHHHHHHHH
Q psy13761 317 KKQVNKYDALKTHAI---SQLEKANQDLDLRNKTYEMETTKLKAMLKK---SEMQITSLQESLARKTEENAELT 384 (402)
Q Consensus 317 kkeeQRYqALKaHAE---EKLe~ANEEIaqvrsk~eaE~~aLqA~LKK---eEmkv~SLEesLEQKtKENeELT 384 (402)
++--.+++.|-.-.. -.++.+-.++..+.+.......+-+-.+|. .+..+.+++..|.+..+-....+
T Consensus 428 ~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~ 501 (1200)
T KOG0964|consen 428 KEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATM 501 (1200)
T ss_pred HHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888876554 456667777777777777666665555553 34555666677777666655544
No 58
>PRK11637 AmiB activator; Provisional
Probab=93.41 E-value=10 Score=38.75 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=12.4
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhhHHHHHHH
Q psy13761 258 KYKKELEKEKEEVQLHLRNSEIAFNDVHLKY 288 (402)
Q Consensus 258 ~eiqkllkERDQa~aDLnS~EkSFSDLhrRY 288 (402)
.++..+..+-+++..++..+++........+
T Consensus 96 ~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 96 NTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333333333
No 59
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.15 E-value=3.7 Score=45.66 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHccc
Q psy13761 380 NAELTSICDDLISKLS 395 (402)
Q Consensus 380 NeELTkICDELIsK~~ 395 (402)
..+.+..-|++|.++.
T Consensus 694 L~~~~~~I~~~v~~ik 709 (717)
T PF10168_consen 694 LKQQGEEIDELVKQIK 709 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555566665554
No 60
>PRK01156 chromosome segregation protein; Provisional
Probab=93.09 E-value=17 Score=40.32 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=16.0
Q ss_pred HHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy13761 357 AMLKKSEMQITSLQESLARKTEENAELTSICDD 389 (402)
Q Consensus 357 A~LKKeEmkv~SLEesLEQKtKENeELTkICDE 389 (402)
..+...+-++.+|+..+.+..++..+|-+.=++
T Consensus 416 ~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~ 448 (895)
T PRK01156 416 VKLQDISSKVSSLNQRIRALRENLDELSRNMEM 448 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555555555555555544443
No 61
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.06 E-value=2.4 Score=42.44 Aligned_cols=87 Identities=28% Similarity=0.321 Sum_probs=49.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 256 FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLE 335 (402)
Q Consensus 256 ~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe 335 (402)
...+++.+..|...+.++|..+|+.-.+|=+.-..+..-...+...|+.+-+....+.-.+-..++..+.|+ .+++
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~----~q~~ 123 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLK----NQYE 123 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 455666666666666666666666666665555555555555566666655555555555554444444443 3344
Q ss_pred HHHHHHHHHHH
Q psy13761 336 KANQDLDLRNK 346 (402)
Q Consensus 336 ~ANEEIaqvrs 346 (402)
.++.+++++++
T Consensus 124 ~~~~~L~~L~k 134 (314)
T PF04111_consen 124 YASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHCHHT
T ss_pred HHHHHHHHHHh
Confidence 45555555544
No 62
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.01 E-value=6 Score=34.86 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHH
Q psy13761 330 AISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLA 374 (402)
Q Consensus 330 AEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLE 374 (402)
+...+....+++.++....+.--+.....+||-+..+..|.+.|.
T Consensus 106 ~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 106 LEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444555566666666666666677777888888888777653
No 63
>KOG0994|consensus
Probab=92.90 E-value=21 Score=42.64 Aligned_cols=104 Identities=10% Similarity=0.106 Sum_probs=55.6
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHh-------hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 258 KYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEG-------MKANEDHLRARHSELEEELKKQVNKYDALKTHA 330 (402)
Q Consensus 258 ~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIeg-------yKkNEE~LKk~ieey~~rvkkeeQRYqALKaHA 330 (402)
.-+.++..+-..+..-++++-...++|-++-+.+|--+-. .-+-=.+.+..+.+.+..++..+..|++.+.-+
T Consensus 1598 ~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~ 1677 (1758)
T KOG0994|consen 1598 QLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLL 1677 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555566666666666666666643211 111122344455555666666666666666555
Q ss_pred HHHHH---HHHHHHHHHHHhhHHHHHHHHHHhhH
Q psy13761 331 ISQLE---KANQDLDLRNKTYEMETTKLKAMLKK 361 (402)
Q Consensus 331 EEKLe---~ANEEIaqvrsk~eaE~~aLqA~LKK 361 (402)
+.+++ .|.+.+.+++..++.-+...+++|.+
T Consensus 1678 ~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~ 1711 (1758)
T KOG0994|consen 1678 EKRMEGSQAARERAEQLRTEAEKLLGQANEKLDR 1711 (1758)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543 35555666666665555555555443
No 64
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.67 E-value=14 Score=40.56 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHH
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIE 296 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIe 296 (402)
+...++.+.....+|..-|..+...+.+|.++.+..... ..++++..+=+..+..=|..-|..+ +|+..+++
T Consensus 333 l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~-~~~le~~~~l~~k~~~lL~d~e~ni-------~kL~~~v~ 404 (594)
T PF05667_consen 333 LQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAE-NEELEEELKLKKKTVELLPDAEENI-------AKLQALVE 404 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcHHHH-------HHHHHHHH
Confidence 455555556666666666777777777766665544333 3333333333444444344444444 55566666
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 297 GMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLR 344 (402)
Q Consensus 297 gyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqv 344 (402)
.=..|=..|...-+.+.. -....|..|+.-...+...+...++++
T Consensus 405 ~s~~rl~~L~~qWe~~R~---pL~~e~r~lk~~~~~~~~e~~~~~~~i 449 (594)
T PF05667_consen 405 ASEQRLVELAQQWEKHRA---PLIEEYRRLKEKASNRESESKQKLQEI 449 (594)
T ss_pred HHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 555554445444444443 345566667665555555555444433
No 65
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=92.59 E-value=16 Score=38.68 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Q psy13761 338 NQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSSCV 398 (402)
Q Consensus 338 NEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~~~~ 398 (402)
.+.+++-|..+.+.+..|++.|+-.+.-+.+....+ ........|+.-|+.|.+.+..+.
T Consensus 366 ~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~-~~~~~~~~l~~a~~~l~~~l~~~~ 425 (582)
T PF09731_consen 366 KEKVEQERNGRLAKLAELNSRLKALEEALDARSEAE-DENRRAQQLWLAVDALKSALDSGN 425 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455677777888888888888888888888876654 456777899999999999988863
No 66
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.49 E-value=13 Score=37.49 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 221 IEKLKKENASYQKMLNDYENTIT 243 (402)
Q Consensus 221 ~e~l~~~n~eM~~Im~EYEktI~ 243 (402)
|.+|.+.+.+=+.++.++|..+.
T Consensus 72 C~EL~~~I~egr~~~~~~E~et~ 94 (312)
T smart00787 72 CKELKKYISEGRDLFKEIEEETL 94 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555556666666554
No 67
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.47 E-value=12 Score=36.80 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=5.4
Q ss_pred HHHHHHHHHhHHHhh
Q psy13761 267 KEEVQLHLRNSEIAF 281 (402)
Q Consensus 267 RDQa~aDLnS~EkSF 281 (402)
++++.+.++.++...
T Consensus 146 ~~~l~~~i~~~~~~i 160 (423)
T TIGR01843 146 LELILAQIKQLEAEL 160 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 68
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.24 E-value=10 Score=35.80 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy13761 332 SQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTS 385 (402)
Q Consensus 332 EKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTk 385 (402)
.+|+.++..|..+.++.+.....++..+..+.-++..+...+.....|+..|+.
T Consensus 132 ~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 132 QKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555554443
No 69
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.21 E-value=15 Score=37.58 Aligned_cols=158 Identities=14% Similarity=0.178 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhH
Q psy13761 215 DEKDKLIEKLKKENASYQKMLNDYE-----------------NTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNS 277 (402)
Q Consensus 215 ~~~~~~~e~l~~~n~eM~~Im~EYE-----------------ktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~ 277 (402)
|..+.+.++|+..++.|.+=..++. ..+++++.+.....+.+..++..+...-..+..|.-.+
T Consensus 26 DqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlL 105 (319)
T PF09789_consen 26 DQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLL 105 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 4466677888888888877666555 67778888877777777777777777777777776655
Q ss_pred HHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHh
Q psy13761 278 EIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHA----------ISQLEKANQDLDLRNKT 347 (402)
Q Consensus 278 EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHA----------EEKLe~ANEEIaqvrsk 347 (402)
=..+++.=...+ ...+.++-..-+.|-..++.....+.+++.-|+++-.-- ..|.++.|.|+..+-..
T Consensus 106 R~~la~~r~~~~--~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g 183 (319)
T PF09789_consen 106 REKLARQRVGDE--GIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNG 183 (319)
T ss_pred HHHHHhhhhhhc--cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 555555422221 112222224455566666666666666666666664433 34677889999988887
Q ss_pred hHHH---HHHHHHHhhHHHHHHhhHHHHHH
Q psy13761 348 YEME---TTKLKAMLKKSEMQITSLQESLA 374 (402)
Q Consensus 348 ~eaE---~~aLqA~LKKeEmkv~SLEesLE 374 (402)
+... +-+|=+..|-.+-++.+++++..
T Consensus 184 ~~~rivDIDaLi~ENRyL~erl~q~qeE~~ 213 (319)
T PF09789_consen 184 DENRIVDIDALIMENRYLKERLKQLQEEKE 213 (319)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766 77777788888777777776554
No 70
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.12 E-value=0.37 Score=44.39 Aligned_cols=113 Identities=28% Similarity=0.321 Sum_probs=22.3
Q ss_pred hHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHH----------------------HHHHHHHHHHH---HHHHHHHHHHH
Q psy13761 276 NSEIAFNDVHLKYERSKVIIEGMKANEDHLRAR----------------------HSELEEELKKQ---VNKYDALKTHA 330 (402)
Q Consensus 276 S~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~----------------------ieey~~rvkke---eQRYqALKaHA 330 (402)
..|++|.+||.-|.++-+-+..++.-=..|... +..+...+.++ -..-..-+...
T Consensus 14 ~~e~~~~~li~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el 93 (194)
T PF08614_consen 14 RREKAFAELIDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGEL 93 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 356788888888888777766655443333321 11112222111 11112223444
Q ss_pred HHHHHHHHHHHHHHHHhhH---HHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 331 ISQLEKANQDLDLRNKTYE---METTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLI 391 (402)
Q Consensus 331 EEKLe~ANEEIaqvrsk~e---aE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELI 391 (402)
.++|..+|.++..++.... ..+..|++.+...+.++..|+..|..|.+-|+-|. ||++
T Consensus 94 ~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~---DE~~ 154 (194)
T PF08614_consen 94 AQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ---DELQ 154 (194)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred cccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 5566666666655554433 34555566666666666666666666666654443 5544
No 71
>KOG0933|consensus
Probab=92.06 E-value=30 Score=40.64 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=75.3
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 258 KYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKA 337 (402)
Q Consensus 258 ~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~A 337 (402)
.++.-.+.+++.+...++. .+|.-+...++.+++-++..+.+-......+.+.++.+...+....-.++.=+.+|.-+
T Consensus 715 ~ql~l~~~~l~l~~~r~~~--~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl 792 (1174)
T KOG0933|consen 715 QQLELKLHELALLEKRLEQ--NEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDL 792 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHH
Confidence 3344444444444333321 24555556666555555555544444445555556666666666666666666666666
Q ss_pred HHHHHHHHHhh----------HHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy13761 338 NQDLDLRNKTY----------EMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLS 395 (402)
Q Consensus 338 NEEIaqvrsk~----------eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~ 395 (402)
..+|....... ..+...|++..--++-.+.+.+.++.|..+....|..=-++|+.++.
T Consensus 793 ~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~ 860 (1174)
T KOG0933|consen 793 EKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD 860 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555443 33444555555555555666666666666666666666666665554
No 72
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.56 E-value=25 Score=40.10 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHH-----HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHh
Q psy13761 226 KENASYQKMLNDYENTITQCVNQRENDKKQ-----FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKA 300 (402)
Q Consensus 226 ~~n~eM~~Im~EYEktI~qlIeE~eq~k~~-----~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKk 300 (402)
-+|.+++.- -+++.|-+-|.++.++. ..=++-.+.--+--+...|...-++.-.|-.+-|.+-.||++.|.
T Consensus 394 sENaqLrRr----Lrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~ 469 (861)
T PF15254_consen 394 SENAQLRRR----LRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKE 469 (861)
T ss_pred hhhHHHHHH----HHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Confidence 355555532 24444444444444432 233455555555555666666666667777777777777777555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHH
Q psy13761 301 NEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEEN 380 (402)
Q Consensus 301 NEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKEN 380 (402)
.--.|.+-+.+-...+.+ -|.|.+-...+...|.+ .+-+++..++-+|.-.++...-|.-+|.|+..|+
T Consensus 470 Enk~~~~~~~ekd~~l~~-------~kq~~d~e~~rik~ev~----eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi 538 (861)
T PF15254_consen 470 ENKRLRKMFQEKDQELLE-------NKQQFDIETTRIKIEVE----EALVNVKSLQFKLEASEKENQILGITLRQRDAEI 538 (861)
T ss_pred HHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHH----HHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHH
Confidence 444444444444444433 33343333333333333 3445677788899999999999999999999998
Q ss_pred HHHHHHHHHHHHcc
Q psy13761 381 AELTSICDDLISKL 394 (402)
Q Consensus 381 eELTkICDELIsK~ 394 (402)
.-|-.+--.|=+-|
T Consensus 539 ~RL~eLtR~LQ~Sm 552 (861)
T PF15254_consen 539 ERLRELTRTLQNSM 552 (861)
T ss_pred HHHHHHHHHHHHHH
Confidence 77665555554444
No 73
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=91.56 E-value=12 Score=35.03 Aligned_cols=62 Identities=21% Similarity=0.161 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH
Q psy13761 304 HLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQ 365 (402)
Q Consensus 304 ~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmk 365 (402)
.+...+.++...+...+.+...|+.+.+.--....+..+...+.|+.|+..|+...+....+
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~ 185 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777777666655555666777777888887776665444333
No 74
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=91.19 E-value=25 Score=38.09 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhH----------H-------HHHHHHHHHhHHHHHHHHHHh
Q psy13761 217 KDKLIEKLKKEN---ASYQKMLNDYENTITQCVNQRENDKK----------Q-------FEKYKKELEKEKEEVQLHLRN 276 (402)
Q Consensus 217 ~~~~~e~l~~~n---~eM~~Im~EYEktI~qlIeE~eq~k~----------~-------~~~eiqkllkERDQa~aDLnS 276 (402)
+.+++++||++. +-+-.|+..-..-|-.||+++=+..- + .++.++.-..|++.+.-.|..
T Consensus 343 Le~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK 422 (527)
T PF15066_consen 343 LEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKK 422 (527)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 566677777633 34556777888888888887644211 1 244566677888889999999
Q ss_pred HHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy13761 277 SEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELE--EELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTK 354 (402)
Q Consensus 277 ~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~--~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~a 354 (402)
+-..|--|-.||..- --.+| ...-.|++--. ..-+.+-+|.|.||..++.-.-.|-.=+-+-+...+.|.+.
T Consensus 423 ~k~nyv~LQEry~~e-----iQqKn-ksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLs 496 (527)
T PF15066_consen 423 IKANYVHLQERYMTE-----IQQKN-KSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLS 496 (527)
T ss_pred HhhhHHHHHHHHHHH-----HHHhh-hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888531 11222 23334444211 12234567888888877765555655555666667777788
Q ss_pred HHHHhhHHHHH
Q psy13761 355 LKAMLKKSEMQ 365 (402)
Q Consensus 355 LqA~LKKeEmk 365 (402)
||+.+-|.+-+
T Consensus 497 lqeEfQk~eke 507 (527)
T PF15066_consen 497 LQEEFQKHEKE 507 (527)
T ss_pred HHHHHHHHHHh
Confidence 87777766654
No 75
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=90.94 E-value=0.067 Score=59.61 Aligned_cols=138 Identities=24% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q psy13761 257 EKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDAL---------- 326 (402)
Q Consensus 257 ~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqAL---------- 326 (402)
.....++..|.+.+...|...|..++-|.+.-..+..-++.++.+=+.--+.-..+...+...+.-+..|
T Consensus 207 ~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~ 286 (859)
T PF01576_consen 207 TEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEA 286 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3334445555555555555555555555443333333344444443333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy13761 327 KTHAISQLEKANQDLDLRNKTYEMETTK----LKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKL 394 (402)
Q Consensus 327 KaHAEEKLe~ANEEIaqvrsk~eaE~~a----LqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~ 394 (402)
|...+.+|.++|.+|+++++++..+... |.-.=|+.+.++..++..++.....+..|.+.|--|-+.+
T Consensus 287 k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~El 358 (859)
T PF01576_consen 287 KSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGEL 358 (859)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456777888888888888877665 3444467777777777777777777777777665444433
No 76
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.57 E-value=33 Score=38.36 Aligned_cols=59 Identities=20% Similarity=0.322 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHH
Q psy13761 254 KQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQ 319 (402)
Q Consensus 254 ~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkke 319 (402)
..+..+++.+..+.|++...++++.++ =.+=|+.+..+-+.=...++.-...++.+..+
T Consensus 456 r~lk~eL~qlr~ene~Lq~Kl~~L~~a-------Rq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eE 514 (697)
T PF09726_consen 456 RSLKSELSQLRQENEQLQNKLQNLVQA-------RQQDKQSLQQLEKRLAEERRQRASLEKQLQEE 514 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666655555443 33334444444333333333333344444443
No 77
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.43 E-value=17 Score=34.69 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=21.1
Q ss_pred HHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy13761 355 LKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKL 394 (402)
Q Consensus 355 LqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~ 394 (402)
....+.+.+..+..|+..|..-...+..+.+=-|..++.+
T Consensus 195 aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 195 AERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566666666666555555554444444444443
No 78
>KOG0804|consensus
Probab=90.41 E-value=26 Score=37.83 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=34.6
Q ss_pred cCCCCCCCCCCCCccccCcccc--cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q psy13761 187 LNGNCATSTPSGTAHTANLISP--ERNSTSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELE 264 (402)
Q Consensus 187 ~~~~~~~~~p~~~~~~~~ii~~--l~~s~~~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkll 264 (402)
.+|-||-..-.|.......++. +.||. -+..+.+ .++.+-+ .+|.+|++ ++.+.+++. +..++
T Consensus 296 ~dGklve~~~~~~~~~~~~~~~~~~~~s~--ll~sqle-Sqr~y~e--~~~~e~~q------sqlen~k~~----~e~~~ 360 (493)
T KOG0804|consen 296 TDGKLVESSTEGDDSRKDDCDSLELEYSP--LLTSQLE-SQRKYYE--QIMSEYEQ------SQLENQKQY----YELLI 360 (493)
T ss_pred CCCceEEeccccccccccCcceEEeecch--hhhhhhh-HHHHHHH--HHHHHHHH------HHHHhHHHH----HHHHH
Confidence 5677775543444434455554 45553 2333322 1222211 44555555 233333333 44455
Q ss_pred hHHHHHHHHHHhHHH
Q psy13761 265 KEKEEVQLHLRNSEI 279 (402)
Q Consensus 265 kERDQa~aDLnS~Ek 279 (402)
.+.+++..+++.+|+
T Consensus 361 ~e~~~l~~~~~~~e~ 375 (493)
T KOG0804|consen 361 TEADSLKQESSDLEA 375 (493)
T ss_pred HHHHhhhhhhhHHHH
Confidence 555555555444443
No 79
>KOG4673|consensus
Probab=90.27 E-value=18 Score=41.03 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-----------H-----HHHHHHHHHHhhHHHHHHHHHHhh
Q psy13761 300 ANEDHLRARHSELEEELKKQVNKYDALKT---HAISQLE-----------K-----ANQDLDLRNKTYEMETTKLKAMLK 360 (402)
Q Consensus 300 kNEE~LKk~ieey~~rvkkeeQRYqALKa---HAEEKLe-----------~-----ANEEIaqvrsk~eaE~~aLqA~LK 360 (402)
.|+...---..+|..||...+.+++++-. .+.-++. + -|+.|+++... =-+|-
T Consensus 395 ~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~E--------GEkLS 466 (961)
T KOG4673|consen 395 SNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAE--------GEKLS 466 (961)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--------HHHhH
Confidence 34444444456777777777777776521 1111111 1 33334443332 12466
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q psy13761 361 KSEMQITSLQESLARKTEENAELTSICDDLISKLSS 396 (402)
Q Consensus 361 KeEmkv~SLEesLEQKtKENeELTkICDELIsK~~~ 396 (402)
|.++.....=+.|..|.|+++-|.+=--++|.++++
T Consensus 467 K~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~s 502 (961)
T KOG4673|consen 467 KKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQS 502 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHH
Confidence 666666666667777777777777766677766654
No 80
>KOG0612|consensus
Probab=90.13 E-value=40 Score=40.24 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=29.6
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhH
Q psy13761 257 EKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMK 299 (402)
Q Consensus 257 ~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyK 299 (402)
..+++++..+|....+..+.+|+. .+...|++-.+++.+..
T Consensus 643 ~~~l~k~~el~r~~~e~~~~~ek~--~~e~~~e~~lk~~q~~~ 683 (1317)
T KOG0612|consen 643 KKELLKVEELKRENQERISDSEKE--ALEIKLERKLKMLQNEL 683 (1317)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 455667777777788888888887 77778887777766543
No 81
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.12 E-value=21 Score=35.28 Aligned_cols=15 Identities=40% Similarity=0.488 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHcc
Q psy13761 380 NAELTSICDDLISKL 394 (402)
Q Consensus 380 NeELTkICDELIsK~ 394 (402)
-.++..=|++|.+++
T Consensus 158 ~~~~~~~~~~L~~~l 172 (239)
T COG1579 158 GQELSSKREELKEKL 172 (239)
T ss_pred HHHHHHHHHHHHHhc
Confidence 333444444444444
No 82
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.01 E-value=30 Score=37.07 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=41.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHH
Q psy13761 256 FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEE 315 (402)
Q Consensus 256 ~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~r 315 (402)
..+.+..+...-|+++..|..--.|+..+.+...++...+...+++-..|+..+.....+
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345666677777777777777777777777777777777777776666666666555555
No 83
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=89.99 E-value=23 Score=35.62 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 367 TSLQESLARKTEENAELTSICDDL 390 (402)
Q Consensus 367 ~SLEesLEQKtKENeELTkICDEL 390 (402)
..+...++...+.++-|-+||--|
T Consensus 282 ~~~~~~~~~~~~k~~kLe~LcRaL 305 (309)
T PF09728_consen 282 QKLEKELEKLKKKIEKLEKLCRAL 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566777788888888888766
No 84
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=89.91 E-value=19 Score=34.70 Aligned_cols=131 Identities=8% Similarity=0.164 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhH
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENT----ITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSK 292 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEkt----I~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~K 292 (402)
|...+.++...-.++..+.+.+..- +..++.+.++.++.+....+++..+++....+|+..-+.|..+++-++..+
T Consensus 67 W~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar 146 (237)
T cd07657 67 WKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAK 146 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777666677777776553 567788999999999999999999999999999999999999999888888
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13761 293 VIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKT 347 (402)
Q Consensus 293 evIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk 347 (402)
.-.+.--...-.-+..++....++.+-..+....|..=--.|..||.....-...
T Consensus 147 ~k~e~a~~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~ 201 (237)
T cd07657 147 SKFEEAVVKGGRGGRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYRTL 201 (237)
T ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7543321111001112233333333333333334444444555555555544433
No 85
>KOG4673|consensus
Probab=89.76 E-value=42 Score=38.29 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHH--HHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHH
Q psy13761 255 QFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLK--YERSKVIIEGMKANEDHLRARHSELEEELKKQV 320 (402)
Q Consensus 255 ~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrR--YEK~KevIegyKkNEE~LKk~ieey~~rvkkee 320 (402)
.+++.++-+++|||.++...+|+-+..+.-.-+ .--.-++|.++...=|+|-|..-....-|+++.
T Consensus 413 ~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLR 480 (961)
T KOG4673|consen 413 TLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLR 480 (961)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 357788999999999999999998877654444 123556777777777777766655555555543
No 86
>PRK09039 hypothetical protein; Validated
Probab=89.64 E-value=25 Score=35.64 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=74.3
Q ss_pred HhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 264 EKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDL 343 (402)
Q Consensus 264 lkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaq 343 (402)
...-.++...|......+++.|....+++.=|+.++.-=..|...+...+++.+..+.++..|+..-+.-|..-..++++
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~ 194 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNR 194 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556789999999999999999999999999988888888888888888888888888887777777776788888
Q ss_pred HHHhhHHHHH
Q psy13761 344 RNKTYEMETT 353 (402)
Q Consensus 344 vrsk~eaE~~ 353 (402)
.+++.-..+.
T Consensus 195 ~~~~~~~~l~ 204 (343)
T PRK09039 195 YRSEFFGRLR 204 (343)
T ss_pred hHHHHHHHHH
Confidence 8888766554
No 87
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=89.40 E-value=21 Score=34.39 Aligned_cols=96 Identities=11% Similarity=0.081 Sum_probs=56.1
Q ss_pred HHHHHHHHh---HHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 268 EEVQLHLRN---SEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLR 344 (402)
Q Consensus 268 DQa~aDLnS---~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqv 344 (402)
..+..+|.. +=.+|..||.||..+|.+ -+...++..+|...+.+-....+-+...+..-+++|..+
T Consensus 51 ~ElI~ELkqsKklydnYYkL~~KY~~LK~~-----------~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~ 119 (196)
T PF15272_consen 51 QELINELKQSKKLYDNYYKLYSKYQELKKS-----------SKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSL 119 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334444444 445788999999999883 233445566666666666555566666666666776666
Q ss_pred HHhhHHHHHHHHHHhhHHHHHHhhHHHHHH
Q psy13761 345 NKTYEMETTKLKAMLKKSEMQITSLQESLA 374 (402)
Q Consensus 345 rsk~eaE~~aLqA~LKKeEmkv~SLEesLE 374 (402)
....+.=....+...-+-|.+|..|+..|.
T Consensus 120 ~~r~~el~~~r~~e~~~YesRI~dLE~~L~ 149 (196)
T PF15272_consen 120 ELRNKELQNERERERIAYESRIADLERQLN 149 (196)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 555333333333333355556666666554
No 88
>KOG0977|consensus
Probab=89.21 E-value=38 Score=37.12 Aligned_cols=121 Identities=14% Similarity=0.226 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHH---HHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHH
Q psy13761 237 DYENTITQCVNQRENDKKQFEKY---KKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELE 313 (402)
Q Consensus 237 EYEktI~qlIeE~eq~k~~~~~e---iqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~ 313 (402)
+|+.-|.++-+|...-+..+.+. ......+.+.....|+.+|+..+-+-+|+..+-+-...++++-..|...+....
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34444444444444433333222 222333444445666777777777777777777777777777777777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Q psy13761 314 EELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKK 361 (402)
Q Consensus 314 ~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKK 361 (402)
..++.+. .|+.-+..+.+..-++|+-..+.|+.|+.-+++..++
T Consensus 190 ~~ld~Et----llr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~r 233 (546)
T KOG0977|consen 190 KQLDDET----LLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARR 233 (546)
T ss_pred HHHHHHH----HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 6666654 3444445555555556666666666666555555443
No 89
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.17 E-value=27 Score=35.31 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=17.0
Q ss_pred CcccccccccchHHHHHHHHHHHHHHHHHH
Q psy13761 204 NLISPERNSTSDEKDKLIEKLKKENASYQK 233 (402)
Q Consensus 204 ~ii~~l~~s~~~~~~~~~e~l~~~n~eM~~ 233 (402)
|+....++| -+++.+.|.+-+....+|-.
T Consensus 63 P~LElY~~s-C~EL~~~I~egr~~~~~~E~ 91 (312)
T smart00787 63 PLLELYQFS-CKELKKYISEGRDLFKEIEE 91 (312)
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 444555555 46777777776665555443
No 90
>KOG0243|consensus
Probab=88.85 E-value=55 Score=38.47 Aligned_cols=110 Identities=13% Similarity=0.168 Sum_probs=58.9
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q psy13761 257 EKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAI----- 331 (402)
Q Consensus 257 ~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAE----- 331 (402)
..+..++....+.-..+|.+++.-|.++.......-.+|..+.++|.++......+...++........|=..-.
T Consensus 482 ~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~ 561 (1041)
T KOG0243|consen 482 KEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRL 561 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 344444444444444455555555555555544444558888888888888777777666666655554422111
Q ss_pred -----HH----HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHH
Q psy13761 332 -----SQ----LEKANQDLDLRNKTYEMETTKLKAMLKKSEMQI 366 (402)
Q Consensus 332 -----EK----Le~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv 366 (402)
.. -....+-+..+...+.........+|+...+..
T Consensus 562 ~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~ 605 (1041)
T KOG0243|consen 562 DDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLAQM 605 (1041)
T ss_pred ccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 11 112233444455555555555555565554444
No 91
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.83 E-value=21 Score=34.81 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=11.1
Q ss_pred HHHhHHHHHHHHHHhHHHhhHHH
Q psy13761 262 ELEKEKEEVQLHLRNSEIAFNDV 284 (402)
Q Consensus 262 kllkERDQa~aDLnS~EkSFSDL 284 (402)
....+..|..+|.|.||..+...
T Consensus 50 ~h~eeLrqI~~DIn~lE~iIkqa 72 (230)
T PF10146_consen 50 AHVEELRQINQDINTLENIIKQA 72 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555544443
No 92
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.74 E-value=18 Score=32.62 Aligned_cols=84 Identities=23% Similarity=0.268 Sum_probs=44.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 256 FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLE 335 (402)
Q Consensus 256 ~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe 335 (402)
.+.+|..+..-..++-.+|..++..+.++-...+.. -.....|| .|...|+.+...+...+.+. ..|.++|.
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~---~~~~~~~E-~l~rriq~LEeele~ae~~L----~e~~ekl~ 104 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES---EKRKSNAE-QLNRRIQLLEEELEEAEKKL----KETTEKLR 104 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHhHH-HHHhhHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 344555666666666666666666666654443332 12222333 56666666665555555544 24555555
Q ss_pred HHHHHHHHHHHh
Q psy13761 336 KANQDLDLRNKT 347 (402)
Q Consensus 336 ~ANEEIaqvrsk 347 (402)
.|+...+.+.++
T Consensus 105 e~d~~ae~~eRk 116 (143)
T PF12718_consen 105 EADVKAEHFERK 116 (143)
T ss_pred HHHHHhHHHHHH
Confidence 555555544443
No 93
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=88.68 E-value=47 Score=37.46 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=38.8
Q ss_pred HHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHH
Q psy13761 260 KKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQ 319 (402)
Q Consensus 260 iqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkke 319 (402)
....+.+++.....+.+++.....+...++.++.-++.+......+...+++....+...
T Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 369 (908)
T COG0419 310 LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEER 369 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666777777777777777777777777777777666666666665555544444
No 94
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.54 E-value=22 Score=33.41 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13761 221 IEKLKKENASYQKMLNDYENTITQCVN 247 (402)
Q Consensus 221 ~e~l~~~n~eM~~Im~EYEktI~qlIe 247 (402)
+-.++.....++.-.+....-|...++
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555444555555555444
No 95
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=88.42 E-value=19 Score=33.67 Aligned_cols=125 Identities=18% Similarity=0.279 Sum_probs=68.0
Q ss_pred cCcccccccccch-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHH
Q psy13761 203 ANLISPERNSTSD-----------EKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQ 271 (402)
Q Consensus 203 ~~ii~~l~~s~~~-----------~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~ 271 (402)
+++|+++++..++ -+...+++++.++..+..-+++-+..|...-...... .+|..+.
T Consensus 42 DglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~------------~eR~~~l 109 (188)
T PF03962_consen 42 DGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES------------EEREELL 109 (188)
T ss_pred cccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------------HHHHHHH
Confidence 4677777765433 2555566666666666666666666555543222111 3444444
Q ss_pred HHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 272 LHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLD 342 (402)
Q Consensus 272 aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIa 342 (402)
+.|+.+++....|...+++.... =-..-+.+++.+..+.+.+..|.--.-.|+.|...+...-.++|.
T Consensus 110 ~~l~~l~~~~~~l~~el~~~~~~---Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~~~~~~~i~ 177 (188)
T PF03962_consen 110 EELEELKKELKELKKELEKYSEN---DPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKKKFGMDEEDIR 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCHHHHH
Confidence 44444444444444444322221 011223456666666667777777778888888877655444443
No 96
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.37 E-value=30 Score=34.89 Aligned_cols=23 Identities=4% Similarity=0.114 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Q psy13761 372 SLARKTEENAELTSICDDLISKL 394 (402)
Q Consensus 372 sLEQKtKENeELTkICDELIsK~ 394 (402)
++.+..++.+=-..+.+.|..+.
T Consensus 343 ~~~~L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 343 EMSVLQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445544555666666554
No 97
>KOG0243|consensus
Probab=88.33 E-value=54 Score=38.55 Aligned_cols=119 Identities=24% Similarity=0.336 Sum_probs=83.7
Q ss_pred HHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 260 KKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQ 339 (402)
Q Consensus 260 iqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANE 339 (402)
.+.....-+++..++.++++.|.+|-..|-.+-.+-..+++--+.+++.+..-...+.-.+..|+.+++. |....+
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~----l~~~e~ 518 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT----LKEEEE 518 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 3444455566777888888888888888887777777777777777777777777777777777766544 222222
Q ss_pred HHHHH---HHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q psy13761 340 DLDLR---NKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAE 382 (402)
Q Consensus 340 EIaqv---rsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeE 382 (402)
-|.+. ..+.......|+..+...+..+++|-+-|.+|.+.++.
T Consensus 519 ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~ 564 (1041)
T KOG0243|consen 519 IISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDD 564 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 23222 22333347789999999999999999999999876654
No 98
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=87.98 E-value=34 Score=35.01 Aligned_cols=100 Identities=22% Similarity=0.263 Sum_probs=73.0
Q ss_pred HhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHhhHHHHH
Q psy13761 289 ERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNK---TYEMETTKLKAMLKKSEMQ 365 (402)
Q Consensus 289 EK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrs---k~eaE~~aLqA~LKKeEmk 365 (402)
+-+.+-+.++..--..|+..+..+...-...+.+.+.|-.-.-.+|..||.+|+.+.. ....+....|-.+-+...+
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsq 242 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQ 242 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555566777777777666677777888888788899999998877654 3445566667777777777
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Q psy13761 366 ITSLQESLARKTEENAELTSICD 388 (402)
Q Consensus 366 v~SLEesLEQKtKENeELTkICD 388 (402)
+..|+..+.+..-||+||..+-.
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Confidence 78888888899999999987643
No 99
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=87.90 E-value=23 Score=32.88 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=26.7
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHH
Q psy13761 239 ENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDV 284 (402)
Q Consensus 239 EktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDL 284 (402)
++++.|.|.+.+..-......+..+...+.++...+...+..-.++
T Consensus 25 ~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~ 70 (221)
T PF04012_consen 25 EKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKW 70 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666665555555556666666666655555555544444
No 100
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=87.90 E-value=15 Score=39.44 Aligned_cols=122 Identities=18% Similarity=0.227 Sum_probs=58.9
Q ss_pred ccCCCcccccc-chhhhhhcccccccCccCCCCCCCCCCCCC-CCCcchhhccccccccccccccccccccccccccccc
Q psy13761 108 FQTGDECKAPI-SESELRKQSLYVQFDPFLKSPVRQKPSIKS-PPTQSIMEEESLNDSAKLLGTSELNESVNSLSIKENE 185 (402)
Q Consensus 108 f~~g~e~~ssf-kESalRKQsLYlkFDplLksp~r~~pv~~~-~~~~~~~~~~~~~~~~~llg~~~~p~~v~~~~~~~~~ 185 (402)
.+-|-+|--+- .=|||||-|.=|-||||=--|. .||... ..+|+..+. .....+.||+..-.- .... ..+.
T Consensus 10 LqRGLqIIDyHq~NsA~rrSSvsfSf~~l~l~P~--~~v~KvDv~vQT~pe~-~~~~~a~llC~sCk~-~~~~---~~~~ 82 (488)
T PF06548_consen 10 LQRGLQIIDYHQQNSALRRSSVSFSFRHLALKPC--QPVDKVDVAVQTLPED-NESRDASLLCSSCKK-KIQD---DDNS 82 (488)
T ss_pred HhcCchhhhccccCccccccccccccCCccCCCc--chhhhccHHhhcCccc-cccccchhhhhhhcc-hhhc---chhh
Confidence 34466663332 3679999999999999976554 466552 334443211 122225555442100 0000 0000
Q ss_pred ccCCCCCCCCCCCCccccCc-ccccccc---c--chHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 186 SLNGNCATSTPSGTAHTANL-ISPERNS---T--SDEKDKLIEKLKKENASYQKMLNDYE 239 (402)
Q Consensus 186 ~~~~~~~~~~p~~~~~~~~i-i~~l~~s---~--~~~~~~~~e~l~~~n~eM~~Im~EYE 239 (402)
..+..|.... ..+++.. =++++.. . ...++..+.+.-.++.++...|..|-
T Consensus 83 ~e~~~~~~lq---Lv~~d~~~KavekVlagaIrREmeLEe~C~eQAakIeQLNrLVqQyK 139 (488)
T PF06548_consen 83 KENDNSSKLQ---LVPADGSEKAVEKVLAGAIRREMELEEVCAEQAAKIEQLNRLVQQYK 139 (488)
T ss_pred ccccccccce---eeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0111111100 0011111 1121111 1 23577778888889999999999883
No 101
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.70 E-value=6.9 Score=36.14 Aligned_cols=21 Identities=43% Similarity=0.574 Sum_probs=13.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHH
Q psy13761 365 QITSLQESLARKTEENAELTS 385 (402)
Q Consensus 365 kv~SLEesLEQKtKENeELTk 385 (402)
+...+++.+....+||.+|+.
T Consensus 159 ~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 159 QLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666777777764
No 102
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=87.50 E-value=58 Score=37.09 Aligned_cols=92 Identities=22% Similarity=0.334 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHH
Q psy13761 301 NEDHLRARHSELEEELKKQVNKY---DALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKT 377 (402)
Q Consensus 301 NEE~LKk~ieey~~rvkkeeQRY---qALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKt 377 (402)
+=+.++.++.+.+..|...+... ...+.-++.+|....+-+ ...+..+..+++.++..+.++.+|+..|+...
T Consensus 618 ~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~----e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er 693 (769)
T PF05911_consen 618 QLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESY----ESLETRLKDLEAEAEELQSKISSLEEELEKER 693 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555544433332 233334444444443333 33344455678889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcccc
Q psy13761 378 EENAELTSICDDLISKLSS 396 (402)
Q Consensus 378 KENeELTkICDELIsK~~~ 396 (402)
.-.+|+..=|-+|=.++.+
T Consensus 694 ~~~~e~~~kc~~Le~el~r 712 (769)
T PF05911_consen 694 ALSEELEAKCRELEEELER 712 (769)
T ss_pred hcchhhhhHHHHHHHHHHh
Confidence 9999999889999666554
No 103
>KOG0804|consensus
Probab=87.47 E-value=35 Score=36.88 Aligned_cols=109 Identities=25% Similarity=0.242 Sum_probs=54.0
Q ss_pred HhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhh
Q psy13761 289 ERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITS 368 (402)
Q Consensus 289 EK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~S 368 (402)
+++|+-.+...++=..|+....+.++..+-.++|.+.+. +|+++..+|+...+...+.=...+.+-..|.+-..++
T Consensus 350 en~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q----~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~ 425 (493)
T KOG0804|consen 350 ENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQ----TKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEER 425 (493)
T ss_pred HhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333333333333333344444444444444444433332 2333333333333333333333344444445555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccccCC
Q psy13761 369 LQESLARKTEENAELTSICDDLISKLSSCVKLK 401 (402)
Q Consensus 369 LEesLEQKtKENeELTkICDELIsK~~~~~~~~ 401 (402)
+.+.+.+|...+.+|-.=--||+.-++...+||
T Consensus 426 ~~~~~~s~d~~I~dLqEQlrDlmf~le~qqklk 458 (493)
T KOG0804|consen 426 EKEALGSKDEKITDLQEQLRDLMFFLEAQQKLK 458 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHheehhhhhhhh
Confidence 667777777777777777777777777665553
No 104
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=87.33 E-value=25 Score=32.65 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=26.0
Q ss_pred HHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 292 KVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLR 344 (402)
Q Consensus 292 KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqv 344 (402)
+..+..+....+.|+..+.++..++.....+...|++... ...|...+...
T Consensus 104 ~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~--~a~a~~~~~~~ 154 (221)
T PF04012_consen 104 EQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN--AAKAQKKVNEA 154 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 3444445555555555566666666666655555554332 33344444443
No 105
>KOG0612|consensus
Probab=87.14 E-value=76 Score=38.10 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy13761 325 ALKTHAISQLEKANQDLDLRNKTYEME 351 (402)
Q Consensus 325 ALKaHAEEKLe~ANEEIaqvrsk~eaE 351 (402)
+++++-+.++...-.++.+++..|...
T Consensus 667 ~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 667 ALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777777766666555
No 106
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=86.93 E-value=34 Score=33.82 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHH----
Q psy13761 216 EKDKLIEKLKKENASYQKMLNDYENT----ITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLK---- 287 (402)
Q Consensus 216 ~~~~~~e~l~~~n~eM~~Im~EYEkt----I~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrR---- 287 (402)
-|...+.++...-.++..+-+.|-.- +..++.+.++..+.+.....++..|++....+|..+-+.|...++.
T Consensus 71 ~W~~~L~qt~~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~~Kk~~e~~~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~a 150 (264)
T cd07654 71 VWGAWLEGLDAVAQSRQNRCEAYRRYISEPAKTGRSAKEQQLKKCTEQLQRAQAEVQQTVRELSKSRKTYFEREQVAHLA 150 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46666677776666666666666543 3456678888888888999999999999999999999988776443
Q ss_pred HHhhHHH
Q psy13761 288 YERSKVI 294 (402)
Q Consensus 288 YEK~Kev 294 (402)
|+|.+.+
T Consensus 151 r~K~~~a 157 (264)
T cd07654 151 REKAADV 157 (264)
T ss_pred HHHHHHH
Confidence 5555543
No 107
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=86.73 E-value=15 Score=29.69 Aligned_cols=11 Identities=27% Similarity=0.096 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q psy13761 382 ELTSICDDLIS 392 (402)
Q Consensus 382 ELTkICDELIs 392 (402)
++......++.
T Consensus 109 e~L~~~~~i~~ 119 (127)
T smart00502 109 ELLLSKKLIIE 119 (127)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 108
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=86.53 E-value=29 Score=32.60 Aligned_cols=89 Identities=13% Similarity=0.210 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhH---
Q psy13761 226 KENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANE--- 302 (402)
Q Consensus 226 ~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNE--- 302 (402)
.....|+..+.+|.+.|.. +..+...|.++..+..+++..+.-...+.+|++.. | +.+.
T Consensus 84 ~e~~~l~~~L~ey~r~~~S---------------vk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~--~-~s~~~K~ 145 (216)
T cd07627 84 QDVLTLGVTLDEYIRSIGS---------------VRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQ--G-KTQQEKL 145 (216)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--C-CChHHHH
Confidence 4677788899999987765 45689999999999999999999999888888742 1 2122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 303 DHLRARHSELEEELKKQVNKYDALKTHAIS 332 (402)
Q Consensus 303 E~LKk~ieey~~rvkkeeQRYqALKaHAEE 332 (402)
..++..|.+++.++....++|+.+...+..
T Consensus 146 ~~~~~ei~~~e~~~~~a~~~~e~is~~~k~ 175 (216)
T cd07627 146 NSLLSELEEAERRASELKKEFEEVSELIKS 175 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123444444444444444444444444333
No 109
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=86.43 E-value=33 Score=33.17 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q psy13761 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKK 254 (402)
Q Consensus 215 ~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~ 254 (402)
.|+..--.+|..+|..+...|+-+|..-+++.++...-+.
T Consensus 11 ~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~ 50 (193)
T PF14662_consen 11 EDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRK 50 (193)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555677778888888888888887777766444333
No 110
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.30 E-value=17 Score=36.44 Aligned_cols=117 Identities=22% Similarity=0.242 Sum_probs=38.5
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 258 KYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKA 337 (402)
Q Consensus 258 ~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~A 337 (402)
.++..+.+|+|+...=|+.++.. .+.-..+.....-+..+++.|+.+.+.+.+++.......+.-..|+..+.+
T Consensus 16 ~~~~~~~~E~~~Y~~fL~~l~~~-~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~----- 89 (314)
T PF04111_consen 16 KQLEQAEKERDTYQEFLKKLEEE-SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE----- 89 (314)
T ss_dssp ---------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 33444455555555544444411 111222333334445555555555555555555444444443333332221
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHH
Q psy13761 338 NQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAEL 383 (402)
Q Consensus 338 NEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeEL 383 (402)
+.+-..++-.+.-.++..+-..+-+..|++.+++.-....+-|
T Consensus 90 ---l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 90 ---LDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222333333444444444444555555554444444443
No 111
>KOG0994|consensus
Probab=86.27 E-value=86 Score=37.90 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=67.7
Q ss_pred HHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 259 YKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKAN 338 (402)
Q Consensus 259 eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~AN 338 (402)
.++.|....-|...+...+++.-...-.+-...++..+.+.+-.+....-++.-+....--++|-++|+..|+.-|-.||
T Consensus 1627 ~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~ 1706 (1758)
T KOG0994|consen 1627 RMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQAN 1706 (1758)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555555555555555666666666677788888888888888888
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHH
Q psy13761 339 QDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAEL 383 (402)
Q Consensus 339 EEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeEL 383 (402)
..++.+.. |+...-..++.+.+++..|.-.+++.+++
T Consensus 1707 ~kl~~l~d--------Le~~y~~~~~~L~~~~aeL~~Le~r~~~v 1743 (1758)
T KOG0994|consen 1707 EKLDRLKD--------LELEYLRNEQALEDKAAELAGLEKRVESV 1743 (1758)
T ss_pred HHHHHHHH--------HHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 87776643 23333334444444444444444444443
No 112
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.13 E-value=90 Score=37.99 Aligned_cols=46 Identities=9% Similarity=0.097 Sum_probs=27.9
Q ss_pred HHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q psy13761 351 ETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSS 396 (402)
Q Consensus 351 E~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~~ 396 (402)
.+..+.+.+...+.++..++..+.......+.+.+-.-.++...|.
T Consensus 443 ~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 443 WLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGE 488 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444555566666666666666666666666666666666665554
No 113
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.83 E-value=13 Score=35.63 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHH
Q psy13761 305 LRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQES 372 (402)
Q Consensus 305 LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEes 372 (402)
|.+.+++..+++....+.+...++--.++++.++..|.+++.+ ...|+..|...+.++..|+..
T Consensus 98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~----n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEE----NQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555555555555555553332 223344444444444444333
No 114
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=85.60 E-value=55 Score=35.01 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=38.8
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 257 EKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEK 336 (402)
Q Consensus 257 ~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ 336 (402)
...+..|..|...+...|.+++.+..+-.... ..+......--..+++.+.+....+..+...+ ......+.+|..
T Consensus 171 ~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~---~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~ 246 (522)
T PF05701_consen 171 EEKVEELSKEIIALKESLESAKLAHIEAEEER---IEIAAEREQDAEEWEKELEEAEEELEELKEEL-EAAKDLESKLAE 246 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34444455555555555555554444433221 12222222222334444455555555555555 233344455555
Q ss_pred HHHHHHHHHH
Q psy13761 337 ANQDLDLRNK 346 (402)
Q Consensus 337 ANEEIaqvrs 346 (402)
++.+|..++.
T Consensus 247 a~~~l~~Lq~ 256 (522)
T PF05701_consen 247 ASAELESLQA 256 (522)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 115
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.50 E-value=26 Score=35.14 Aligned_cols=97 Identities=22% Similarity=0.241 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhHH--HhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 266 EKEEVQLHLRNSE--IAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDL 343 (402)
Q Consensus 266 ERDQa~aDLnS~E--kSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaq 343 (402)
.+.-.++-|.++- .+|+|+-.+|+-+|+-++...+.-+.|.+.+++.+..+...+.|...| +.-|..+..
T Consensus 113 ~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~l--------e~E~s~LeE 184 (290)
T COG4026 113 KNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRL--------EVENSRLEE 184 (290)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 3445677788877 689999999999999777766655666666665555555544444332 233334444
Q ss_pred HHHhhHHHHHHHHHHhhHHHHHHhhHH
Q psy13761 344 RNKTYEMETTKLKAMLKKSEMQITSLQ 370 (402)
Q Consensus 344 vrsk~eaE~~aLqA~LKKeEmkv~SLE 370 (402)
..+....++-.|+..+--.+-.+.+++
T Consensus 185 ~~~~l~~ev~~L~~r~~ELe~~~El~e 211 (290)
T COG4026 185 MLKKLPGEVYDLKKRWDELEPGVELPE 211 (290)
T ss_pred HHHhchhHHHHHHHHHHHhcccccchH
Confidence 444444455555555554444444443
No 116
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=85.46 E-value=72 Score=36.27 Aligned_cols=163 Identities=19% Similarity=0.225 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---HHHHHH---------------------HHHHHhHHHHHHH
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDK---KQFEKY---------------------KKELEKEKEEVQL 272 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k---~~~~~e---------------------iqkllkERDQa~a 272 (402)
+.+-.+.|+....+|.+++.--|+.|..|-...--.. +.+..+ +..+..|+.++..
T Consensus 427 ~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQ 506 (786)
T PF05483_consen 427 FEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQ 506 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344577777888888877766666655432221111 111222 2233333333333
Q ss_pred HHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhH
Q psy13761 273 HLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQ---DLDLRNKTYE 349 (402)
Q Consensus 273 DLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANE---EIaqvrsk~e 349 (402)
-|+|+--...++.+-|.+-+++++.+.+.|+.+...-.....-...++..+..+-+-.-- ..+...+.-.
T Consensus 507 -------E~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e 579 (786)
T PF05483_consen 507 -------ETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIE 579 (786)
T ss_pred -------HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHH
Confidence 466666677788899999999999999999987777666655555555544443332222 2223344455
Q ss_pred HHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy13761 350 METTKLKAMLKKSEMQITSLQESLARKTEENAELTSI 386 (402)
Q Consensus 350 aE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkI 386 (402)
-++....-.++-.+-++..|..+++.|++-.++|-.-
T Consensus 580 ~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqe 616 (786)
T PF05483_consen 580 CEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQE 616 (786)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6777777788888888889999999998888887543
No 117
>KOG3850|consensus
Probab=85.35 E-value=28 Score=37.06 Aligned_cols=75 Identities=21% Similarity=0.292 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHH--hhHHHHHHHHHHHHHH
Q psy13761 305 LRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQI--TSLQESLARKTEENAE 382 (402)
Q Consensus 305 LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv--~SLEesLEQKtKENeE 382 (402)
+++.+.=|.+.++++.=||..|-..-. .+..-|++|++-|+-.|--++-+| +|-+ ..++++|
T Consensus 290 ~krdy~fi~etLQEERyR~erLEEqLN-----------dlteLqQnEi~nLKqElasmeervaYQsyE-----RaRdIqE 353 (455)
T KOG3850|consen 290 IKRDYKFIAETLQEERYRYERLEEQLN-----------DLTELQQNEIANLKQELASMEERVAYQSYE-----RARDIQE 353 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 555666677777777777776643333 333344445544444333333333 2222 2455555
Q ss_pred HHHHHHHHHHccc
Q psy13761 383 LTSICDDLISKLS 395 (402)
Q Consensus 383 LTkICDELIsK~~ 395 (402)
-+.-|--=|+||+
T Consensus 354 alEscqtrisKlE 366 (455)
T KOG3850|consen 354 ALESCQTRISKLE 366 (455)
T ss_pred HHHHHHHHHHHHH
Confidence 5666655555554
No 118
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=85.31 E-value=38 Score=32.90 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=18.1
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhh
Q psy13761 258 KYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGM 298 (402)
Q Consensus 258 ~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegy 298 (402)
..|.....+..++...+..+=....-++++|+++...++.|
T Consensus 31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~ 71 (225)
T COG1842 31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKL 71 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444555444444443
No 119
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=85.30 E-value=23 Score=31.87 Aligned_cols=63 Identities=22% Similarity=0.202 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHh
Q psy13761 303 DHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQIT 367 (402)
Q Consensus 303 E~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~ 367 (402)
+.+.+.+.++.+....-++++..|+.-+....=+ .++.++-++++.-...|...+++.|..|.
T Consensus 55 e~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk--~eYk~llk~y~~~~~~L~k~I~~~e~iI~ 117 (126)
T PF09403_consen 55 EAAEAELAELKELYAEIEEKIEKLKQDSKVRWYK--DEYKELLKKYKDLLNKLDKEIAEQEQIID 117 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555444333322 45555555555555555555444444443
No 120
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=85.20 E-value=24 Score=30.94 Aligned_cols=22 Identities=9% Similarity=-0.003 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q psy13761 334 LEKANQDLDLRNKTYEMETTKL 355 (402)
Q Consensus 334 Le~ANEEIaqvrsk~eaE~~aL 355 (402)
+..|+.++++....+..++..-
T Consensus 91 ~~~a~~ea~~~~~~a~~~i~~e 112 (156)
T PRK05759 91 KAEAEAEAARIKAQAQAEIEQE 112 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444444443
No 121
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=85.18 E-value=34 Score=32.28 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=23.6
Q ss_pred HhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy13761 346 KTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISK 393 (402)
Q Consensus 346 sk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK 393 (402)
..++..+..|+.++-.....+..|...|.+.....+++-.-=+.|+.+
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar 142 (219)
T TIGR02977 95 QKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIR 142 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555555544444444443
No 122
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=84.93 E-value=32 Score=36.15 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy13761 306 RARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTS 385 (402)
Q Consensus 306 Kk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTk 385 (402)
+..++-+...+.++.-||+.|- +.+.+...-|+.|+..|+..|--.+-|++= +...+.+++.|...
T Consensus 243 ~~e~~~~~~~LqEEr~R~erLE-----------eqlNd~~elHq~Ei~~LKqeLa~~EEK~~Y---qs~eRaRdi~E~~E 308 (395)
T PF10267_consen 243 QREYQFILEALQEERYRYERLE-----------EQLNDLTELHQNEIYNLKQELASMEEKMAY---QSYERARDIWEVME 308 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHhHHHHHHH
Confidence 3334455666666666666553 445556666777777777777655555432 23446777888888
Q ss_pred HHHHHHHccc
Q psy13761 386 ICDDLISKLS 395 (402)
Q Consensus 386 ICDELIsK~~ 395 (402)
-|--=|+||+
T Consensus 309 s~qtRisklE 318 (395)
T PF10267_consen 309 SCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHH
Confidence 8877777777
No 123
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=84.58 E-value=34 Score=31.70 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHH
Q psy13761 314 EELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTE 378 (402)
Q Consensus 314 ~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtK 378 (402)
.....|+.|..+|....+..|+.|+.. .....+.++.++...|.|=.--+..+|+.|+.+++
T Consensus 112 ~~hqe~erRL~~mi~~~e~~l~~~~~~---~~~~lq~ei~a~e~RL~RCr~Ai~~iE~~I~~~Er 173 (173)
T PF07445_consen 112 AQHQEYERRLLAMIQEREQQLEQAQSF---EQQQLQQEILALEQRLQRCRQAIEKIEEQIQRRER 173 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345678999999999999999998877 45567778999999999999999999999998764
No 124
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=84.57 E-value=60 Score=34.55 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH--------------HHHHHHhHHHHHHHHHHhHHHhh
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEK--------------YKKELEKEKEEVQLHLRNSEIAF 281 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~--------------eiqkllkERDQa~aDLnS~EkSF 281 (402)
++..++-++........-+.+|-.-....+..+++....+.. ++..+..|++.+..+++.++...
T Consensus 219 ~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 219 LQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555666663334444444443333222 24556667777777766666665
No 125
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=84.52 E-value=33 Score=31.61 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=10.6
Q ss_pred HHHHHHHHHHcccccc
Q psy13761 383 LTSICDDLISKLSSCV 398 (402)
Q Consensus 383 LTkICDELIsK~~~~~ 398 (402)
-..||.+++.|++.++
T Consensus 151 a~~lA~~i~~kL~~~~ 166 (181)
T PRK13454 151 AKDTAEALVAALGGKA 166 (181)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 3457778888876543
No 126
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.30 E-value=67 Score=34.90 Aligned_cols=38 Identities=24% Similarity=0.178 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy13761 350 METTKLKAMLKKSEMQITSLQESLARKTEENAELTSIC 387 (402)
Q Consensus 350 aE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkIC 387 (402)
.++..++..+.+.+..+.+++..+++..++.+++.+-.
T Consensus 428 e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 428 EELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555554444433
No 127
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=83.98 E-value=40 Score=32.06 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 321 NKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDL 390 (402)
Q Consensus 321 QRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDEL 390 (402)
.+++.--.+...+++..|..=-.....+..++..|...++..-.++-.++..+.+..+|+.+|-+-|-++
T Consensus 146 ~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 146 KRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444556677788888888888888888888888888888888777655
No 128
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=83.98 E-value=9.7 Score=34.84 Aligned_cols=70 Identities=36% Similarity=0.335 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHH
Q psy13761 311 ELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEEN 380 (402)
Q Consensus 311 ey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKEN 380 (402)
-+..++...+.+..+++..++..-+.+..-........+.|+..|+..|++.+..+..|.++.++.++|.
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555666667777777777766655444445555666777777888888887777777777777777664
No 129
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=83.98 E-value=1e+02 Score=36.83 Aligned_cols=91 Identities=12% Similarity=0.127 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHhhHHHHHHhhHHHHH----HHH
Q psy13761 304 HLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKT---YEMETTKLKAMLKKSEMQITSLQESL----ARK 376 (402)
Q Consensus 304 ~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk---~eaE~~aLqA~LKKeEmkv~SLEesL----EQK 376 (402)
.+...+.+|...+..+...|+.|. +|...+..+-..++.+... .+.+...++..+...+.++..++..+ ++.
T Consensus 848 ~~~~aL~~y~~~l~~l~~~~~~L~-~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel 926 (1353)
T TIGR02680 848 AVGLALKRFGDHLHTLEVAVRELR-HAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEI 926 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777777773 5555555555555444332 33444455555555555555555443 344
Q ss_pred HHHHHHHHHHHHHHHHccc
Q psy13761 377 TEENAELTSICDDLISKLS 395 (402)
Q Consensus 377 tKENeELTkICDELIsK~~ 395 (402)
..+.+++-.-.|++-..++
T Consensus 927 ~a~L~e~r~rL~~l~~el~ 945 (1353)
T TIGR02680 927 RARLAETRAALASGGRELP 945 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554443
No 130
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=83.98 E-value=69 Score=34.80 Aligned_cols=15 Identities=40% Similarity=0.528 Sum_probs=5.8
Q ss_pred HHHHHhHHHHHHHHH
Q psy13761 260 KKELEKEKEEVQLHL 274 (402)
Q Consensus 260 iqkllkERDQa~aDL 274 (402)
+.++..+.+.+...|
T Consensus 400 ~~~~e~el~~l~~~l 414 (650)
T TIGR03185 400 LRELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444433333
No 131
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=83.86 E-value=40 Score=31.97 Aligned_cols=159 Identities=15% Similarity=0.286 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHH
Q psy13761 215 DEKDKLIEKLKKENASYQKMLNDYENT----------ITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDV 284 (402)
Q Consensus 215 ~~~~~~~e~l~~~n~eM~~Im~EYEkt----------I~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDL 284 (402)
.++...++.+..+|.-|+.+=..-++. ++++|.-...+-..+...+.+....-..+...+...+.-.--+
T Consensus 22 ~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~ 101 (194)
T PF15619_consen 22 AELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKT 101 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777666654443433 4444444333333333333332222222222333222222222
Q ss_pred HHHHHhhHHHHH--hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Q psy13761 285 HLKYERSKVIIE--GMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKS 362 (402)
Q Consensus 285 hrRYEK~KevIe--gyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKe 362 (402)
.....+++..++ ++- .-+.|-..+.....++...+.+-+.|..+++- +|.-+.+--..-..-...+++.++-.
T Consensus 102 ~~~l~~L~~L~~dknL~-eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL----~~k~~~rql~~e~kK~~~~~~~~~~l 176 (194)
T PF15619_consen 102 KDELKHLKKLSEDKNLA-EREELQRKLSQLEQKLQEKEKKIQELEKQLEL----ENKSFRRQLASEKKKHKEAQEEVKSL 176 (194)
T ss_pred HHHHHHHHHHHHcCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222 111 23556666666666666666666666554333 33333332233333344556666666
Q ss_pred HHHHhhHHHHHHHHHH
Q psy13761 363 EMQITSLQESLARKTE 378 (402)
Q Consensus 363 Emkv~SLEesLEQKtK 378 (402)
++++..|...|.-|.+
T Consensus 177 ~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 177 QEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666666655555544
No 132
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=83.86 E-value=0.33 Score=54.30 Aligned_cols=181 Identities=21% Similarity=0.268 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----------------hHHHHHHHHHHHhHHHHHHHHHHhH
Q psy13761 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQREND-----------------KKQFEKYKKELEKEKEEVQLHLRNS 277 (402)
Q Consensus 215 ~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~-----------------k~~~~~eiqkllkERDQa~aDLnS~ 277 (402)
.++.....++..++.++..-+++.+..+.++.-..... +..+...+..+..+.+.+...+..-
T Consensus 204 ~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE 283 (859)
T PF01576_consen 204 NELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEE 283 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 34555566777777778777777777776664322211 1111222333333333333333333
Q ss_pred HHhhHHHHHHHHhhHHHHHhhHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy13761 278 EIAFNDVHLKYERSKVIIEGMKANEDHLRAR-HSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLK 356 (402)
Q Consensus 278 EkSFSDLhrRYEK~KevIegyKkNEE~LKk~-ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLq 356 (402)
+.+=++|.+.+.++..=+..+++..+.--.. +.++..-=++...++..+....+ ........+...+...+.|+--++
T Consensus 284 ~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le-~~~~~~~~LeK~k~rL~~EleDl~ 362 (859)
T PF01576_consen 284 EEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLE-EANAKVSSLEKTKKRLQGELEDLT 362 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333322221111 11122222222223322221111 112222333444555666777777
Q ss_pred HHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q psy13761 357 AMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSS 396 (402)
Q Consensus 357 A~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~~ 396 (402)
..|-+....+.+|+.....-.+.+.|+..-|+++....+.
T Consensus 363 ~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~ 402 (859)
T PF01576_consen 363 SELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDA 402 (859)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776666777777777777777655544
No 133
>KOG2077|consensus
Probab=83.65 E-value=31 Score=38.59 Aligned_cols=115 Identities=16% Similarity=0.188 Sum_probs=75.7
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 257 EKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEK 336 (402)
Q Consensus 257 ~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ 336 (402)
-.++..|+.|+-|+...-|.+.--=+||..+-..+-.--.-++..=+..|..-..++++|++.+.....+|+.|+..-.+
T Consensus 300 GrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 300 GREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred hHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777777776666666667776666554322222333334455555556777777777777788888777665
Q ss_pred HHH-----------------HHHHH---HHhhHHHHHHHHHHhhHHHHHHhhHHH
Q psy13761 337 ANQ-----------------DLDLR---NKTYEMETTKLKAMLKKSEMQITSLQE 371 (402)
Q Consensus 337 ANE-----------------EIaqv---rsk~eaE~~aLqA~LKKeEmkv~SLEe 371 (402)
|+. |+++| |..++..+.-||-.+|=.||...|-+.
T Consensus 380 ~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavrWTEMiRAsre~ 434 (832)
T KOG2077|consen 380 AKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVRWTEMIRASREN 434 (832)
T ss_pred hcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhcC
Confidence 553 44444 567888888999999999998888654
No 134
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=83.64 E-value=87 Score=35.69 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=74.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 256 FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLE 335 (402)
Q Consensus 256 ~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe 335 (402)
.-.+|+.+....-|++..|+|+-. ++-++++-++--...-..|-...--++..-...++..+.+...|+...+.+ .
T Consensus 532 ~~kqie~Lee~~~~Lrneles~~e---el~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk-~ 607 (786)
T PF05483_consen 532 MLKQIENLEETNTQLRNELESVKE---ELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENK-N 607 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-H
Confidence 456778888888888777666543 344455544443333333333333444555556666666666676666655 3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy13761 336 KANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSI 386 (402)
Q Consensus 336 ~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkI 386 (402)
+.-+++.+-..-....++|--+++.-.+++|..|+..++...+-.+|.|.+
T Consensus 608 K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~ 658 (786)
T PF05483_consen 608 KNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDK 658 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 444445555555555666666666666777777777777666666665543
No 135
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.56 E-value=78 Score=35.08 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=23.8
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHH
Q psy13761 258 KYKKELEKEKEEVQLHLRNSEIAFNDVHLKYE 289 (402)
Q Consensus 258 ~eiqkllkERDQa~aDLnS~EkSFSDLhrRYE 289 (402)
..+.+++..+-++...|..|+.+|-.|..-..
T Consensus 153 ~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~ 184 (617)
T PF15070_consen 153 ATASRALSQNRELKEQLAELQDAFVKLTNENM 184 (617)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35667777888888888888888877765543
No 136
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=83.28 E-value=56 Score=33.50 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHH
Q psy13761 251 NDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQV 320 (402)
Q Consensus 251 q~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkee 320 (402)
+.-++.+..+.++.+||.|-.-.|.|+|+++ .|+|.-.+.=+.|-..||....-+.+....++
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaL-------qKQKqK~e~ek~e~s~LkREnq~l~e~c~~le 80 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAAL-------QKQKQKVEEEKNEYSALKRENQSLMESCENLE 80 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHH
Confidence 3445577889999999999999999999986 56777777777777777766655544444333
No 137
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=83.24 E-value=60 Score=33.57 Aligned_cols=102 Identities=12% Similarity=0.208 Sum_probs=47.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHH----hhHHHHHHHH
Q psy13761 214 SDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEI----AFNDVHLKYE 289 (402)
Q Consensus 214 ~~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~Ek----SFSDLhrRYE 289 (402)
++||+.-+++.+.-...+..++.+...-+.. +..+.......+.+-|+ .|..+.+.|-
T Consensus 215 ~kDWR~hleqm~~~~~~I~~~~~~~~~~L~k------------------l~~~i~~~lekI~sREk~iN~qle~l~~eYr 276 (359)
T PF10498_consen 215 AKDWRSHLEQMKQHKKSIESALPETKSQLDK------------------LQQDISKTLEKIESREKYINNQLEPLIQEYR 276 (359)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4678888887766554444444444333333 33333333333333333 3444444444
Q ss_pred hhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 290 RSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQ 333 (402)
Q Consensus 290 K~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEK 333 (402)
..+.-+...+.-...+-..+.++...+....+..+.+|...+++
T Consensus 277 ~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 277 SAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444333344444444444444444444444444443
No 138
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=83.03 E-value=43 Score=31.68 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=11.8
Q ss_pred HHHHHHHHHcccccc
Q psy13761 384 TSICDDLISKLSSCV 398 (402)
Q Consensus 384 TkICDELIsK~~~~~ 398 (402)
.++-|+.|.++|...
T Consensus 190 ~~lI~~~i~~l~~~~ 204 (205)
T PRK06231 190 DKLVDEFIRELEANE 204 (205)
T ss_pred HHHHHHHHHHcccCC
Confidence 677888998888754
No 139
>KOG0946|consensus
Probab=82.83 E-value=1e+02 Score=35.86 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhh
Q psy13761 222 EKLKKENASYQKMLNDYENTI---TQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGM 298 (402)
Q Consensus 222 e~l~~~n~eM~~Im~EYEktI---~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegy 298 (402)
|+++..+..++.++-+-...| .|+..+.+.+.+.++++++....+..|+...++-++..|.-.-.+-..+-+-.+-+
T Consensus 653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~ 732 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEAS 732 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhc
Confidence 444444444444443333322 23333444444445555555555555555444444444432211111222223344
Q ss_pred HhhHHHHHHHHHHH
Q psy13761 299 KANEDHLRARHSEL 312 (402)
Q Consensus 299 KkNEE~LKk~ieey 312 (402)
+.+.+.|-....+|
T Consensus 733 ~t~~eel~a~~~e~ 746 (970)
T KOG0946|consen 733 KTQNEELNAALSEN 746 (970)
T ss_pred cCChHHHHHHHHHH
Confidence 44555554444433
No 140
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.55 E-value=51 Score=32.20 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhh
Q psy13761 230 SYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKAN 301 (402)
Q Consensus 230 eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkN 301 (402)
+++.=+.+|+++-..+..+.+-...+ ..-|....+|++.|..+-.+......++|.-+..+-.+|...+..
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e~e-e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLENE-EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666554444333 244555556666666655555555556666666666666654333
No 141
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=82.47 E-value=40 Score=37.92 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=33.0
Q ss_pred HHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy13761 277 SEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLK 356 (402)
Q Consensus 277 ~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLq 356 (402)
.+..+.+|..+-++.+.-++..+.. +.+..+++....+..+++++.|+..-.+.++.|.++..+.-+++..++..+-
T Consensus 509 ~~~~~~~li~~L~~~~~~~e~~~~~---~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i 585 (771)
T TIGR01069 509 FKEEINVLIEKLSALEKELEQKNEH---LEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESII 585 (771)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433332222 2223333333333333333344444444444444444444444444444444
Q ss_pred HHhhH
Q psy13761 357 AMLKK 361 (402)
Q Consensus 357 A~LKK 361 (402)
..+|+
T Consensus 586 ~~lk~ 590 (771)
T TIGR01069 586 RELKE 590 (771)
T ss_pred HHHHh
Confidence 44443
No 142
>PRK10698 phage shock protein PspA; Provisional
Probab=82.32 E-value=48 Score=31.77 Aligned_cols=52 Identities=12% Similarity=0.048 Sum_probs=41.3
Q ss_pred HHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 277 SEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKT 328 (402)
Q Consensus 277 ~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKa 328 (402)
.+.....|-.-|+.+...+..++.+...|+..++++..+-..+-.||++-++
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777888888888888888888888888888888888887655
No 143
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=82.26 E-value=57 Score=36.75 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Q psy13761 307 ARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKK 361 (402)
Q Consensus 307 k~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKK 361 (402)
+..+++.......+++++.|+.+-...++.|.++..++-++++.++..+-..+|+
T Consensus 541 ~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 541 ALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444445555555555555555555555555555555555543
No 144
>KOG4438|consensus
Probab=82.03 E-value=79 Score=34.04 Aligned_cols=52 Identities=6% Similarity=0.019 Sum_probs=36.5
Q ss_pred HHHHHHhHHHHHHHHHHhHHHhhHH-HHHHHHhhHHHHHhhHhhHHHHHHHHH
Q psy13761 259 YKKELEKEKEEVQLHLRNSEIAFND-VHLKYERSKVIIEGMKANEDHLRARHS 310 (402)
Q Consensus 259 eiqkllkERDQa~aDLnS~EkSFSD-LhrRYEK~KevIegyKkNEE~LKk~ie 310 (402)
.+-+......+++++-|++-++=.. -+++.+-.+-.+..+..|...|+..+-
T Consensus 188 sl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV 240 (446)
T KOG4438|consen 188 SLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIV 240 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334445566777787877665555 677778888889999999986665543
No 145
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=81.86 E-value=13 Score=31.19 Aligned_cols=50 Identities=18% Similarity=0.186 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHH
Q psy13761 265 KEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEE 314 (402)
Q Consensus 265 kERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~ 314 (402)
.+|+.+..+...+-.++.+|+.|.+.+|+-...++.+=+.|.+.|..++.
T Consensus 16 e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 16 EEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34888999999999999999999999999999999998998887777654
No 146
>KOG0980|consensus
Probab=81.80 E-value=1.1e+02 Score=35.68 Aligned_cols=91 Identities=13% Similarity=0.092 Sum_probs=65.4
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 258 KYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKA 337 (402)
Q Consensus 258 ~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~A 337 (402)
..+..+.+++..+..-|..+-.+-.-+-.+||-..++.+.++.-=..|--.++.....+....|+|.+..+|-+..+..-
T Consensus 459 ~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~K 538 (980)
T KOG0980|consen 459 QSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQK 538 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555555555555555556888888888888888888888888888888888888988888888888776
Q ss_pred HHHHHHHHHhh
Q psy13761 338 NQDLDLRNKTY 348 (402)
Q Consensus 338 NEEIaqvrsk~ 348 (402)
..+.+.+...-
T Consensus 539 D~~~~~~~~~~ 549 (980)
T KOG0980|consen 539 DRLAAELVARE 549 (980)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 147
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=81.73 E-value=40 Score=30.51 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=10.9
Q ss_pred HHHHHHHHHcccc
Q psy13761 384 TSICDDLISKLSS 396 (402)
Q Consensus 384 TkICDELIsK~~~ 396 (402)
.++-|+.|.++|.
T Consensus 161 ~~li~~~i~~l~~ 173 (174)
T PRK07352 161 QRLIDRSIANLGG 173 (174)
T ss_pred HHHHHHHHHhhcc
Confidence 4889999999884
No 148
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.54 E-value=25 Score=33.60 Aligned_cols=17 Identities=6% Similarity=0.268 Sum_probs=7.3
Q ss_pred HHHHHHHHhHHHhhHHH
Q psy13761 268 EEVQLHLRNSEIAFNDV 284 (402)
Q Consensus 268 DQa~aDLnS~EkSFSDL 284 (402)
.++..++..+....+++
T Consensus 96 p~le~el~~l~~~l~~~ 112 (206)
T PRK10884 96 PDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 149
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=81.52 E-value=48 Score=31.28 Aligned_cols=53 Identities=9% Similarity=0.104 Sum_probs=32.3
Q ss_pred hHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 276 NSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKT 328 (402)
Q Consensus 276 S~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKa 328 (402)
..+.....|-..|..++..+..++..-..|+..+.++..+-..+-.|++.-++
T Consensus 96 ~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 96 KAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666666666666666666666666655444
No 150
>KOG0244|consensus
Probab=81.36 E-value=1.1e+02 Score=35.71 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH---HHHHHHHHHh----HHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHh
Q psy13761 225 KKENASYQKMLNDYENTITQCVNQRENDKKQ---FEKYKKELEK----EKEEVQLHLRNSEIAFNDVHLKYERSKVIIEG 297 (402)
Q Consensus 225 ~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~---~~~eiqkllk----ERDQa~aDLnS~EkSFSDLhrRYEK~KevIeg 297 (402)
..+..+...+++.||.-+..++.+......+ ...++..+-. -.+.-..-|+++|+..++|=++-.-++.+|.-
T Consensus 494 ~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~ 573 (913)
T KOG0244|consen 494 AYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKP 573 (913)
T ss_pred HHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhcc
Confidence 3344578899999999999988765443222 2233322211 12222334556677777766665555555555
Q ss_pred hHhhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHh
Q psy13761 298 MKANED----------HLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQIT 367 (402)
Q Consensus 298 yKkNEE----------~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~ 367 (402)
..+-++ .+|..-.+.+......-.+|.++|..-+..+..... -.++.+.+...+.+..++-.+=..
T Consensus 574 ~~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d~ekfr~~K~~~~Ke~~qlk~----~~rk~~~~~~~~~~l~~~q~~vl~ 649 (913)
T KOG0244|consen 574 KPKSEGIRAKLLQEIHIAKGQKVQLLRVMKEDAEKFRQWKDRTEKEWNQLKG----QERKSEGEHPKLEVLVKKQNYVLQ 649 (913)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc----cchhhccchhHHHHHHHHHHHHHH
Confidence 444444 344444455556666667777777665554443322 245566777778887777766655
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy13761 368 SLQESLARKTEENAELTS 385 (402)
Q Consensus 368 SLEesLEQKtKENeELTk 385 (402)
-..++.-.-+|.+.+|+-
T Consensus 650 ~kt~eas~~~krlk~a~~ 667 (913)
T KOG0244|consen 650 RKTEEASAANKRLKEALC 667 (913)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555556666666666653
No 151
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=81.28 E-value=0.47 Score=51.57 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 314 EELKKQVNKYDALKTHAISQLEKANQDLDLR 344 (402)
Q Consensus 314 ~rvkkeeQRYqALKaHAEEKLe~ANEEIaqv 344 (402)
..+.....++..+|...+.....+..+....
T Consensus 128 ~el~~~~e~~~~~k~~le~~~~~L~~E~~~~ 158 (722)
T PF05557_consen 128 EELEEAEEELEQLKRKLEEEKRRLQREKEQL 158 (722)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444333333333333333
No 152
>KOG0964|consensus
Probab=81.28 E-value=1.2e+02 Score=35.87 Aligned_cols=126 Identities=17% Similarity=0.269 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHH
Q psy13761 216 EKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVII 295 (402)
Q Consensus 216 ~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevI 295 (402)
.-...+.+|+....+.+.-|..+..-|.|++.+.++ ++.....+..+.+.+...++.+-..++.++.-++.-...+
T Consensus 675 ~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk----~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~L 750 (1200)
T KOG0964|consen 675 ESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQK----VENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKEL 750 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHH
Confidence 344556677777777888888888888888877554 3445667888899999999999999999999999988889
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13761 296 EGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKT 347 (402)
Q Consensus 296 egyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk 347 (402)
++++.+=..+......+...+ ...-+..|.-.-.+.+.+.|.+|.++..+
T Consensus 751 e~i~~~l~~~~~~~~~~e~el--~sel~sqLt~ee~e~l~kLn~eI~~l~~k 800 (1200)
T KOG0964|consen 751 EEIKTSLHKLESQSNYFESEL--GSELFSQLTPEELERLSKLNKEINKLSVK 800 (1200)
T ss_pred HHHHHHHHHHHHHHHhHHHHH--hHHHHhhcCHHHHHHHHHhhHHHHHHHHH
Confidence 999988888877776665543 34456778888888889999999887766
No 153
>KOG0933|consensus
Probab=81.15 E-value=1.3e+02 Score=35.85 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=11.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 365 QITSLQESLARKTEENAELTSICDDLIS 392 (402)
Q Consensus 365 kv~SLEesLEQKtKENeELTkICDELIs 392 (402)
.++-|+..+.....+-....+..+.|..
T Consensus 907 ~~kkle~e~~~~~~e~~~~~k~v~~l~~ 934 (1174)
T KOG0933|consen 907 ERKKLEHEVTKLESEKANARKEVEKLLK 934 (1174)
T ss_pred hHHHHHhHHHHhhhhHHHHHHHHHHHHH
Confidence 3333444444444444444444444433
No 154
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=80.90 E-value=56 Score=31.62 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=43.0
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 258 KYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKA 337 (402)
Q Consensus 258 ~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~A 337 (402)
..+..+..+.+.+.+.+...+..+...-+.|++.+.... + --.=+..+.+....+...+..++++++....++..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~---~-g~iS~~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~ 165 (327)
T TIGR02971 90 RAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFR---D-GAVSASDLDSKALKLRTAEEELEEALASRSEQIDGA 165 (327)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---c-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666666666666666666665432 1 122233444445555555555555555444444455
Q ss_pred HHHHHHH
Q psy13761 338 NQDLDLR 344 (402)
Q Consensus 338 NEEIaqv 344 (402)
...++.+
T Consensus 166 ~~~~~~~ 172 (327)
T TIGR02971 166 RAALASL 172 (327)
T ss_pred HHHHHHH
Confidence 5444443
No 155
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=80.78 E-value=85 Score=33.62 Aligned_cols=8 Identities=13% Similarity=0.617 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy13761 236 NDYENTIT 243 (402)
Q Consensus 236 ~EYEktI~ 243 (402)
..|..+|+
T Consensus 123 ~q~~~~~~ 130 (522)
T PF05701_consen 123 EQYASAVA 130 (522)
T ss_pred HHHHHHHH
Confidence 33333333
No 156
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.62 E-value=35 Score=32.64 Aligned_cols=42 Identities=21% Similarity=0.447 Sum_probs=21.5
Q ss_pred HHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy13761 354 KLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLS 395 (402)
Q Consensus 354 aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~ 395 (402)
.++..+...+-++.+|+.++++.++-..+|+-.-.+.|..+.
T Consensus 74 ~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 74 QLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555554444444443
No 157
>KOG3156|consensus
Probab=80.58 E-value=48 Score=32.66 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHh-hHHHHHHHHhhHHHHHhhHh
Q psy13761 227 ENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIA-FNDVHLKYERSKVIIEGMKA 300 (402)
Q Consensus 227 ~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkS-FSDLhrRYEK~KevIegyKk 300 (402)
...-|..|..+=-.+|++.+.-++++.+-. .+....-++++.+|.|+|++ |+-|+.-|||+|--++-+|.
T Consensus 67 It~aiT~v~ndsl~~vsk~~vtkaqq~~v~----~QQ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks 137 (220)
T KOG3156|consen 67 ITSAITTVLNDSLETVSKELVTKAQQEKVS----YQQKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKS 137 (220)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777778888777666555543 34455667888889999875 89999999999988877554
No 158
>KOG4807|consensus
Probab=80.43 E-value=91 Score=33.73 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHH
Q psy13761 236 NDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHL 274 (402)
Q Consensus 236 ~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDL 274 (402)
++.|.|-.+.|++.+++ ++.+++++..|+|-+.++=
T Consensus 344 AaMEetHQkkiEdLQRq---HqRELekLreEKdrLLAEE 379 (593)
T KOG4807|consen 344 AAMEETHQKKIEDLQRQ---HQRELEKLREEKDRLLAEE 379 (593)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhh
Confidence 33455555556655443 5678999999999998863
No 159
>KOG0971|consensus
Probab=80.14 E-value=1.3e+02 Score=35.49 Aligned_cols=91 Identities=18% Similarity=0.236 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHH
Q psy13761 303 DHLRARHSELEEELKKQVNKYDALKTHAISQLEKA-------NQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLAR 375 (402)
Q Consensus 303 E~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~A-------NEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQ 375 (402)
++|...++-..+|++..+--.+-||+..+++=--+ =..|++-....+.-+.+|+--.--+..-.+-+.+.++.
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~ 407 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEK 407 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 45666666666777777777777777666541111 02233333333444555555555555556666777777
Q ss_pred HHHHHHHHHHHHHHHHHc
Q psy13761 376 KTEENAELTSICDDLISK 393 (402)
Q Consensus 376 KtKENeELTkICDELIsK 393 (402)
|..||.||.++-.-|=.+
T Consensus 408 k~sE~~eL~r~kE~Lsr~ 425 (1243)
T KOG0971|consen 408 KNSELEELRRQKERLSRE 425 (1243)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 777777777776655433
No 160
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=79.93 E-value=78 Score=32.69 Aligned_cols=104 Identities=12% Similarity=0.060 Sum_probs=74.4
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHhhHHH----HHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 257 EKYKKELEKEKEEVQLHLRNSEIAFNDV----HLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAIS 332 (402)
Q Consensus 257 ~~eiqkllkERDQa~aDLnS~EkSFSDL----hrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEE 332 (402)
+..+......+.++.+-+.++...-.+. -.+|----.+|.+++.+...+...+.++..++.--.-+..++++-..+
T Consensus 245 n~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~ 324 (458)
T COG3206 245 NTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAE 324 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHH
Confidence 4455555566666666555554332221 123333444789999999999999999999998888888888888888
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy13761 333 QLEKANQDLDLRNKTYEMETTKLKAMLK 360 (402)
Q Consensus 333 KLe~ANEEIaqvrsk~eaE~~aLqA~LK 360 (402)
--.....|+.++...+..+..+++.+..
T Consensus 325 ~~~~~~~e~~~~~~~~~~~~~~l~~~~~ 352 (458)
T COG3206 325 LRQQIAAELRQILASLPNELALLEQQEA 352 (458)
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 8888888999998888888666665533
No 161
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=79.77 E-value=61 Score=31.34 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=23.1
Q ss_pred HHHHHHHhhHHH-HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 283 DVHLKYERSKVI-IEGMKANEDHLRARHSELEEELKKQVNKYDALKTHA 330 (402)
Q Consensus 283 DLhrRYEK~Kev-IegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHA 330 (402)
++-.+|..+|+- |.. |++|-. .=+..=++-+||+.||.-+
T Consensus 41 ~~~~KY~~lR~ElI~E-------LkqsKk-lydnYYkL~~KY~~LK~~~ 81 (196)
T PF15272_consen 41 SYKEKYQQLRQELINE-------LKQSKK-LYDNYYKLYSKYQELKKSS 81 (196)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 344577777754 333 333322 3344556778999999833
No 162
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=79.60 E-value=1.2e+02 Score=34.46 Aligned_cols=13 Identities=15% Similarity=0.092 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy13761 228 NASYQKMLNDYEN 240 (402)
Q Consensus 228 n~eM~~Im~EYEk 240 (402)
..++..++..|++
T Consensus 241 ~~el~~~~~~~~~ 253 (908)
T COG0419 241 LAELEEEKERLEE 253 (908)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444444
No 163
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=79.45 E-value=44 Score=29.48 Aligned_cols=69 Identities=23% Similarity=0.360 Sum_probs=31.6
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 258 KYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTH 329 (402)
Q Consensus 258 ~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaH 329 (402)
..+..+..+...+..+...+.+.+..+.......|+-+.-.+.. +......|.-.+++-+..|+.||.+
T Consensus 80 ~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~---~~~~~tq~~~e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 80 EQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQ---LQQRKTQYEHELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555544444444433332222 3333334455555555555555544
No 164
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=79.28 E-value=50 Score=30.03 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=35.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHH
Q psy13761 339 QDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEEN 380 (402)
Q Consensus 339 EEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKEN 380 (402)
.-++.+...|.+.+..||..++....+++-|+..+.++...+
T Consensus 93 ~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~C 134 (146)
T PF08702_consen 93 YILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQERYC 134 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445667788899999999999999999999999888887643
No 165
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=78.71 E-value=51 Score=29.87 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=11.0
Q ss_pred HHHHHHHHHHcccc
Q psy13761 383 LTSICDDLISKLSS 396 (402)
Q Consensus 383 LTkICDELIsK~~~ 396 (402)
=.++.|+.|.+++.
T Consensus 159 ~~~li~~~i~~l~~ 172 (175)
T PRK14472 159 QKKVVDSMIQDLST 172 (175)
T ss_pred HHHHHHHHHHHhhh
Confidence 45888999988874
No 166
>KOG4643|consensus
Probab=78.67 E-value=1.5e+02 Score=35.27 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHH
Q psy13761 237 DYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANED 303 (402)
Q Consensus 237 EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE 303 (402)
+||..|+++.+= ++.+++...++..+...-.|+..-+..+|--|-+|-.--+++-+.+.+...+-.
T Consensus 395 s~Ee~~SK~lel-eke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~ 460 (1195)
T KOG4643|consen 395 SYEELISKHLEL-EKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLS 460 (1195)
T ss_pred hHHHHHHHHHHH-HHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 799999998753 556666666666666666666666666666666666655666555555544433
No 167
>KOG0963|consensus
Probab=78.36 E-value=1.2e+02 Score=33.99 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----hhhhhhHHHHHHHHH-HHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhh
Q psy13761 227 ENASYQKMLNDYENTITQCVN----QRENDKKQFEKYKKE-LEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKAN 301 (402)
Q Consensus 227 ~n~eM~~Im~EYEktI~qlIe----E~eq~k~~~~~eiqk-llkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkN 301 (402)
.+.-++.=+.+|+...---|+ ..+...+...++.+. +..+...+...+.-+|+..+.|+...+.-.--...++.+
T Consensus 146 ~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~ 225 (629)
T KOG0963|consen 146 TVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSK 225 (629)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 444444445555544443333 444443333444444 444444455556667777777766665544444444444
No 168
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=78.07 E-value=59 Score=30.24 Aligned_cols=121 Identities=17% Similarity=0.241 Sum_probs=79.0
Q ss_pred HHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh
Q psy13761 272 LHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDL----DLRNKT 347 (402)
Q Consensus 272 aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEI----aqvrsk 347 (402)
.-+.+||.|=.++|.=+|.++.=++.+++-=+.+|..+.+..+.++..+.++...+.+- -.++... ..-.+.
T Consensus 6 ~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL----~eVS~~f~~ysE~dik~ 81 (159)
T PF05384_consen 6 KTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRL----AEVSRNFDRYSEEDIKE 81 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhcccCHHHHHH
Confidence 44667888888888888988888888888888999999999999999999998766543 2222222 111111
Q ss_pred hHHHHHHHHH---HhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q psy13761 348 YEMETTKLKA---MLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSS 396 (402)
Q Consensus 348 ~eaE~~aLqA---~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~~ 396 (402)
+=.++..+|. .+|-.+..+.---..|+.--+.+.+...=.|.|+++|+.
T Consensus 82 AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~v 133 (159)
T PF05384_consen 82 AYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGV 133 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222222 233333333333445555666677888888999988875
No 169
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=77.98 E-value=69 Score=31.00 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy13761 216 EKDKLIEKLKKENASYQK 233 (402)
Q Consensus 216 ~~~~~~e~l~~~n~eM~~ 233 (402)
||-.-++.|+..|..+..
T Consensus 5 dL~~~v~dL~~~n~~L~~ 22 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLAD 22 (193)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 455555666666655443
No 170
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=77.92 E-value=65 Score=30.62 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q psy13761 230 SYQKMLNDYENTITQCVNQRENDKKQFEKYKKE 262 (402)
Q Consensus 230 eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqk 262 (402)
-++.||++=...|..-+.+.++.+.+.+..+..
T Consensus 77 pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ 109 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLDQAARLKQEADAAVAA 109 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667776777777776666555554433333
No 171
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=77.59 E-value=83 Score=31.71 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=26.9
Q ss_pred HHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 269 EVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYD 324 (402)
Q Consensus 269 Qa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYq 324 (402)
.+...|+.--.-|.++..-..|+-++..+||+-=+.+-+.+...+.....|..||+
T Consensus 213 ~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e 268 (309)
T PF09728_consen 213 ELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWE 268 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555555555444444444444444444444444433
No 172
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=77.37 E-value=52 Score=29.24 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHc
Q psy13761 325 ALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAEL-------TSICDDLISK 393 (402)
Q Consensus 325 ALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeEL-------TkICDELIsK 393 (402)
+-|..|.+.|-+.-.+.+.++. ...++..|++.++-.+-+-..+=+-+=.|+.+++|| -.+|.+.|..
T Consensus 44 ~~r~~l~~Eiv~l~~~~e~~~~-~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 44 AERDELREEIVKLMEENEELRA-LKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555566556556555533 356677888888888888777655555666666555 5677766654
No 173
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.34 E-value=55 Score=29.51 Aligned_cols=26 Identities=8% Similarity=0.132 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHhHHHhhHHHHHHHHh
Q psy13761 265 KEKEEVQLHLRNSEIAFNDVHLKYER 290 (402)
Q Consensus 265 kERDQa~aDLnS~EkSFSDLhrRYEK 290 (402)
.++....+.+.+++.+|.++-+.+..
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~ 148 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRE 148 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333
No 174
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=77.19 E-value=50 Score=28.92 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhHHHhhHHHHHHHHh
Q psy13761 266 EKEEVQLHLRNSEIAFNDVHLKYER 290 (402)
Q Consensus 266 ERDQa~aDLnS~EkSFSDLhrRYEK 290 (402)
....+..||.+.-+...+...+|++
T Consensus 25 ~~~~~~~dl~~q~~~a~~Aq~~YE~ 49 (132)
T PF07926_consen 25 QLQSLREDLESQAKIAQEAQQKYER 49 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555553
No 175
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=77.18 E-value=1e+02 Score=32.47 Aligned_cols=66 Identities=11% Similarity=0.129 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hHHHHHHhhHHHHHHHH--HHHH--HHH-HHHHHHHHHcccc
Q psy13761 331 ISQLEKANQDLDLRNKTYEMETTKLKAML-KKSEMQITSLQESLARK--TEEN--AEL-TSICDDLISKLSS 396 (402)
Q Consensus 331 EEKLe~ANEEIaqvrsk~eaE~~aLqA~L-KKeEmkv~SLEesLEQK--tKEN--eEL-TkICDELIsK~~~ 396 (402)
++.++.|++|+++...++..++..-+... +..+.++..+--....| .++. ++. -+|.|+.|.+++.
T Consensus 85 ~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~kil~~~l~d~~~~~~lId~~i~~l~~ 156 (445)
T PRK13428 85 EQLRAQADAEAERIKVQGARQVQLLRAQLTRQLRLELGHESVRQAGELVRNHVADPAQQSATVDRFLDELDA 156 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Confidence 34455566666666666555555544433 22233333333222222 1111 243 5889999988865
No 176
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=76.92 E-value=24 Score=32.28 Aligned_cols=122 Identities=16% Similarity=0.298 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHH
Q psy13761 231 YQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHS 310 (402)
Q Consensus 231 M~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ie 310 (402)
...||.+|=+.|.. ....+..+..+++.+..+|....+...+|=. . -.+=+.|++.|+
T Consensus 4 i~~Im~~~gk~i~~-----------~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~----------~-~~d~eeLk~~i~ 61 (155)
T PF06810_consen 4 IDKIMAENGKDIEA-----------PKAKVDKVKEERDNLKTQLKEADKQIKDLKK----------S-AKDNEELKKQIE 61 (155)
T ss_pred HHHHHHHccCcHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------c-cCCHHHHHHHHH
Confidence 45566666555532 3344555677777777777766665544421 0 113355777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHhhHHHHHHh-----hHHHHHHHHHHH
Q psy13761 311 ELEEELKKQVNKYDALKTHAISQLEKANQ-DLDLRNKTYEMETTKLKAMLKKSEMQIT-----SLQESLARKTEE 379 (402)
Q Consensus 311 ey~~rvkkeeQRYqALKaHAEEKLe~ANE-EIaqvrsk~eaE~~aLqA~LKKeEmkv~-----SLEesLEQKtKE 379 (402)
+|...+++..+.|++= -+..+++.|-+ .|..... ....++.+.|-+..+++. .|+++|....+.
T Consensus 62 ~lq~~~~~~~~~~e~~--l~~~~~~~ai~~al~~aka---kn~~av~allD~d~l~l~~dg~~Gldeqi~~lkes 131 (155)
T PF06810_consen 62 ELQAKNKTAKEEYEAK--LAQMKKDSAIKSALKGAKA---KNPKAVKALLDLDKLKLDDDGLKGLDEQIKALKES 131 (155)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCC---CCHHHHHHhcCHHHeeeCCCccccHHHHHHHHHhc
Confidence 7777777666666642 22223333221 1222111 235566677766665543 366666655443
No 177
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=76.75 E-value=38 Score=27.37 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy13761 368 SLQESLARKTEENAELTSICDDLISKL 394 (402)
Q Consensus 368 SLEesLEQKtKENeELTkICDELIsK~ 394 (402)
.|...+++.+.....|...|+..-..+
T Consensus 76 ~l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 76 VLEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333
No 178
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=76.00 E-value=57 Score=28.95 Aligned_cols=97 Identities=16% Similarity=0.213 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHH
Q psy13761 227 ENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLR 306 (402)
Q Consensus 227 ~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LK 306 (402)
....+...+.+|.+.+.. +..++..|+.+..++..++........+.++++..-..=...=+.++
T Consensus 87 ~~~~~~e~L~~y~~~~~s---------------~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~ 151 (218)
T cd07596 87 ELVKLLEPLKEYLRYCQA---------------VKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELE 151 (218)
T ss_pred HHHHHHhHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHH
Confidence 444555555566554332 45567777777777777777777777777777542110011223345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 307 ARHSELEEELKKQVNKYDALKTHAISQLEKAN 338 (402)
Q Consensus 307 k~ieey~~rvkkeeQRYqALKaHAEEKLe~AN 338 (402)
..+.+.+..+.....+|..+..+....|..-+
T Consensus 152 ~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~ 183 (218)
T cd07596 152 EELEEAESALEEARKRYEEISERLKEELKRFH 183 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555666666555555555444
No 179
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=75.61 E-value=65 Score=29.49 Aligned_cols=17 Identities=12% Similarity=-0.038 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHccccc
Q psy13761 381 AELTSICDDLISKLSSC 397 (402)
Q Consensus 381 eELTkICDELIsK~~~~ 397 (402)
+.=.+|+|+.|.++|.-
T Consensus 163 ~~~~~lid~~i~~l~~~ 179 (184)
T CHL00019 163 ELHLRTINANIGLLGAM 179 (184)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34478999999999753
No 180
>PRK11281 hypothetical protein; Provisional
Probab=75.55 E-value=1.8e+02 Score=34.57 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH----------------HHHHHHHHHhHHHHHHHHHHhHHHhhH
Q psy13761 219 KLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQ----------------FEKYKKELEKEKEEVQLHLRNSEIAFN 282 (402)
Q Consensus 219 ~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~----------------~~~eiqkllkERDQa~aDLnS~EkSFS 282 (402)
..+++.+.+..++.+-++.+.+.+.+.-.+.+..++. .+..+.++..+..++.++|+..++...
T Consensus 73 ~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi 152 (1113)
T PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLV 152 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346666777888888888877777776665553331 344556666667777778888888888
Q ss_pred HHHHHHHhhHHHHHhhHh
Q psy13761 283 DVHLKYERSKVIIEGMKA 300 (402)
Q Consensus 283 DLhrRYEK~KevIegyKk 300 (402)
.+-.+.|+....+..-+.
T Consensus 153 ~~qT~PERAQ~~lsea~~ 170 (1113)
T PRK11281 153 SLQTQPERAQAALYANSQ 170 (1113)
T ss_pred hhhcchHHHHHHHHHHHH
Confidence 888888887777555443
No 181
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=75.47 E-value=1.5e+02 Score=34.01 Aligned_cols=76 Identities=22% Similarity=0.351 Sum_probs=60.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 256 FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAI 331 (402)
Q Consensus 256 ~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAE 331 (402)
...++..+..+++-+...|.+.....-.+..++.-+...|..++..=+.+++....+...++.....|+.|..++.
T Consensus 594 l~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~ 669 (769)
T PF05911_consen 594 LEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLK 669 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3556666777777777777777777777777777777778888888889999999999999999999999988744
No 182
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=74.95 E-value=78 Score=30.07 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=6.0
Q ss_pred HHHHHHhhhhh
Q psy13761 240 NTITQCVNQRE 250 (402)
Q Consensus 240 ktI~qlIeE~e 250 (402)
+-|..+|++.+
T Consensus 76 ~pI~~vLe~R~ 86 (204)
T PRK09174 76 PRIGGIIETRR 86 (204)
T ss_pred HHHHHHHHHHH
Confidence 34666666543
No 183
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=74.80 E-value=63 Score=28.90 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Q psy13761 333 QLEKANQDLDLRNKTYEMETTKL 355 (402)
Q Consensus 333 KLe~ANEEIaqvrsk~eaE~~aL 355 (402)
.++.|.++.++....+++++..-
T Consensus 108 ~~~~A~~ea~~~~~~a~~~i~~e 130 (156)
T CHL00118 108 ELKQAQKYIDSLLNEATKQLEAQ 130 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544444444433
No 184
>PF14992 TMCO5: TMCO5 family
Probab=74.75 E-value=64 Score=32.75 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=42.8
Q ss_pred hhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH
Q psy13761 290 RSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALK---THAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQ 365 (402)
Q Consensus 290 K~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALK---aHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmk 365 (402)
.+++.+..-+..=+.+..+....+..+.+.+.-|+... ..+-.-+..-.+.+.++.. ..|+.-|.+.++|.|+.
T Consensus 106 ~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~--ekE~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 106 QLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEE--EKEMLLLEKELSKYQMQ 182 (280)
T ss_pred chhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhch
Confidence 34444444444445555555666666666655555542 2222334445556655555 77888888888888875
No 185
>KOG0962|consensus
Probab=74.61 E-value=2.1e+02 Score=34.79 Aligned_cols=162 Identities=14% Similarity=0.192 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHH
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIE 296 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIe 296 (402)
|-++.+.+.+....+..=|-.|+..+.++=..+++ +......++..++--+.-.+....+|......-+|-+.++-.+.
T Consensus 183 y~KAld~~kk~rkd~~~evk~~~~~l~~lk~~K~~-~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~ 261 (1294)
T KOG0962|consen 183 YTKALDSLKKLRKDQSQEVKTKKQELEHLKTLKER-AEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLK 261 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44555666666666666677777777665544332 22223344444444444444555555555555555555444444
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHH
Q psy13761 297 GMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARK 376 (402)
Q Consensus 297 gyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQK 376 (402)
+|.+ +-..+..+..+......-|..+...-..-.+.--++..+..++++..+.-.+-.++..++++..++.+..-+
T Consensus 262 el~k----~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l 337 (1294)
T KOG0962|consen 262 ELEK----LLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSL 337 (1294)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4322 222333344444444444444444333333445566677778888888888888888888888887666555
Q ss_pred HHHHHHH
Q psy13761 377 TEENAEL 383 (402)
Q Consensus 377 tKENeEL 383 (402)
..+-.+|
T Consensus 338 ~~~k~~~ 344 (1294)
T KOG0962|consen 338 IQLKTEL 344 (1294)
T ss_pred HHHHHHH
Confidence 5555444
No 186
>KOG0962|consensus
Probab=74.21 E-value=2.1e+02 Score=34.71 Aligned_cols=123 Identities=18% Similarity=0.184 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHH
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIE 296 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIe 296 (402)
+...+.+++++.....+.+.+.++.|+.++.= -..+.+....+...+....|+..++..+..-...+..+-.-+..-+.
T Consensus 831 ~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~-~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~ 909 (1294)
T KOG0962|consen 831 KQESLDKLRKEIECLQKEVIEQEREISRLINL-RNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQ 909 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 45555666677777777777888888877754 33344445666667777777777777777666666555444444444
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 297 GMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLR 344 (402)
Q Consensus 297 gyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqv 344 (402)
..+.+ |...+++|.+...+-.. ++.++..--.+|+..|..+-++
T Consensus 910 ~~~~~---l~e~~s~~e~~k~~~~~-~~~~aqk~~~~ine~~s~l~~~ 953 (1294)
T KOG0962|consen 910 PLKVE---LEEAQSEKEELKNERNT-SEKLAQKKRNDINEKVSLLHQI 953 (1294)
T ss_pred chhhh---HHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 43333 34444444433333222 5555554444444444444333
No 187
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=73.93 E-value=67 Score=28.86 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=47.8
Q ss_pred HHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 260 KKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEK 336 (402)
Q Consensus 260 iqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ 336 (402)
+.+++.|-+.+-.|- -+=+.-.++|-+- ...+++..+.+-.|.|...+.-+...-+..+.||+.|++.--..+..
T Consensus 39 ~~~al~Ele~l~eD~-~vYk~VG~llvk~-~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 39 IEKALEELEKLDEDA-PVYKKVGNLLVKV-SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHhcCCccc-HHHHHhhhHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444432 2334445555554 44566778888888888888888888888888888888766555544
No 188
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=73.79 E-value=1.5e+02 Score=32.89 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=31.2
Q ss_pred HHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy13761 352 TTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLS 395 (402)
Q Consensus 352 ~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~ 395 (402)
...|+++|-..+.++..+.+.|+-|..|...|-.--|.+.+-+.
T Consensus 197 ~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lq 240 (617)
T PF15070_consen 197 KKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQ 240 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34567777777777888888888888777777776666555443
No 189
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=73.69 E-value=1.8e+02 Score=33.74 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHh---hHHHHHHHHHHhhHHH---H
Q psy13761 304 HLRARHSELEEELKKQVNKYDALKTHAISQ-------------LEKANQDLDLRNKT---YEMETTKLKAMLKKSE---M 364 (402)
Q Consensus 304 ~LKk~ieey~~rvkkeeQRYqALKaHAEEK-------------Le~ANEEIaqvrsk---~eaE~~aLqA~LKKeE---m 364 (402)
.|++.+..|...+......+..++.+.... ++.+...+..+... ....+..+...++..+ -
T Consensus 781 ~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 860 (1047)
T PRK10246 781 QLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQ 860 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777666555444431 22223333332222 2223334444444333 3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 365 QITSLQESLARKTEENAELTSICDDLIS 392 (402)
Q Consensus 365 kv~SLEesLEQKtKENeELTkICDELIs 392 (402)
++..+...+.+...+.+.+..+++ ||+
T Consensus 861 ~~~~~~~~~~~~~~~~~~~~~L~~-l~~ 887 (1047)
T PRK10246 861 QQQALMQQIAQATQQVEDWGYLNS-LIG 887 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 555666677777777766666665 553
No 190
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=73.62 E-value=86 Score=29.96 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHH
Q psy13761 349 EMETTKLKAMLKKSEMQITSLQESLARKTEE-NAELTSICDDL 390 (402)
Q Consensus 349 eaE~~aLqA~LKKeEmkv~SLEesLEQKtKE-NeELTkICDEL 390 (402)
..++.++++++.|.+-...+.-..+.....+ ..+++.+||.+
T Consensus 149 ~k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~ 191 (261)
T cd07648 149 PKEIEKAEAKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRF 191 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666554444333333222222 34566666654
No 191
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.53 E-value=1.1e+02 Score=30.97 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=62.1
Q ss_pred HhhHHHHHHHHhhHHHHHh---hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy13761 279 IAFNDVHLKYERSKVIIEG---MKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKL 355 (402)
Q Consensus 279 kSFSDLhrRYEK~KevIeg---yKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aL 355 (402)
+||+||..|---+..|++- +-+|-..=++.+++....+....+...+|..-.+.+++..|....+.. .=+..+
T Consensus 127 kSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~----~l~~~~ 202 (265)
T COG3883 127 KSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKN----ALIAAL 202 (265)
T ss_pred CcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 6899999999999887653 333444445566677777777777778888888888888877766544 335566
Q ss_pred HHHhhHHHHHHhhHH
Q psy13761 356 KAMLKKSEMQITSLQ 370 (402)
Q Consensus 356 qA~LKKeEmkv~SLE 370 (402)
.+...+.+-+..+|+
T Consensus 203 aa~~a~~~~e~a~l~ 217 (265)
T COG3883 203 AAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHhHHHHHHHH
Confidence 666666666666665
No 192
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=73.36 E-value=1.3e+02 Score=31.85 Aligned_cols=148 Identities=16% Similarity=0.221 Sum_probs=74.4
Q ss_pred HHHHHHHHHHH--HHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHH
Q psy13761 230 SYQKMLNDYEN--TITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRA 307 (402)
Q Consensus 230 eM~~Im~EYEk--tI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk 307 (402)
+.++|++.=|+ -|..-+++.+++. +++....+++.+.|.-+---|...-.++.++-+.+...++.-.-|.-
T Consensus 76 kirk~~e~~eglr~i~es~~e~q~e~-------~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lql 148 (401)
T PF06785_consen 76 KIRKITEKDEGLRKIRESVEERQQES-------EQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQL 148 (401)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 35666655543 3555555544443 44555566666665544444544444445555544444433333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy13761 308 RHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSIC 387 (402)
Q Consensus 308 ~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkIC 387 (402)
.+.+|.....+-+.+-+.|-..+.| |-.=+..+...+++-..--+-+|++-|..|.-|+..++-..-|..-|..+-
T Consensus 149 qL~~l~~e~~Ekeeesq~LnrELaE----~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle 224 (401)
T PF06785_consen 149 QLDALQQECGEKEEESQTLNRELAE----ALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLE 224 (401)
T ss_pred hHHHHHHHHhHhHHHHHHHHHHHHH----HHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333333211111 111122333344444444556788888888888887777777776666554
Q ss_pred H
Q psy13761 388 D 388 (402)
Q Consensus 388 D 388 (402)
-
T Consensus 225 ~ 225 (401)
T PF06785_consen 225 S 225 (401)
T ss_pred h
Confidence 3
No 193
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=73.34 E-value=1.2e+02 Score=31.51 Aligned_cols=138 Identities=14% Similarity=0.170 Sum_probs=71.6
Q ss_pred CcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHH
Q psy13761 204 NLISPERNSTSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFND 283 (402)
Q Consensus 204 ~ii~~l~~s~~~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSD 283 (402)
..+.|+..- +.+++.-+.+++..+..|......+-+++........ .....+..+..+.+.....|.+.=.+|.+
T Consensus 241 e~l~Vl~~D-a~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~----~~~~~~~~~~~~l~~~~~~l~~yl~~~~~ 315 (412)
T PF04108_consen 241 EMLEVLEND-AQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIR----ELYNALSEALEELRKFGERLPSYLAAFHD 315 (412)
T ss_pred HHHHHHHcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555543 3456666666666665555555555444544433322 22334455556666666666667777777
Q ss_pred HHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 284 VHLKYERSKVIIEGMKANEDHLRARHSELEEE---LKKQVNKYDALKTHAISQLEKANQDLDLRNK 346 (402)
Q Consensus 284 LhrRYEK~KevIegyKkNEE~LKk~ieey~~r---vkkeeQRYqALKaHAEEKLe~ANEEIaqvrs 346 (402)
+..+++..+..|..+-..=..|..--..|..- +-.+-.|=++...+.+.-+..+++++++++.
T Consensus 316 ~~~~~~~~~~~i~~~~~~l~~L~~~Y~~F~~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~l~e 381 (412)
T PF04108_consen 316 FEERWEEEKESIQAYIDELEQLCEFYEGFLSAYDSLLLEVERRRAVRDKMKKIIREANEELDKLRE 381 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776666555444443332222221 1222333333344444455555555554443
No 194
>KOG1853|consensus
Probab=73.24 E-value=1.2e+02 Score=31.23 Aligned_cols=128 Identities=13% Similarity=0.135 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHH----HhhHHHHHHHHhhH
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSE----IAFNDVHLKYERSK 292 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~E----kSFSDLhrRYEK~K 292 (402)
|...--++...-++|+.=+.||-..-..+-.+.+-+-...+.....+..+..++.-++...- -+++..++--..+.
T Consensus 18 wk~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Le 97 (333)
T KOG1853|consen 18 WKLLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLE 97 (333)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445555666555554333333333333322333333444444444444444333 33333333333333
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhHHH
Q psy13761 293 VIIEGMKANEDHLRARHSELEEELKKQVNKYDALK----------THAISQLEKANQDLDLRNKTYEME 351 (402)
Q Consensus 293 evIegyKkNEE~LKk~ieey~~rvkkeeQRYqALK----------aHAEEKLe~ANEEIaqvrsk~eaE 351 (402)
.-....+.--+.|++ .|.+++|+.+-|- ..-+.+|+.|-+.++-+.+.....
T Consensus 98 ddlsqt~aikeql~k-------yiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEk 159 (333)
T KOG1853|consen 98 DDLSQTHAIKEQLRK-------YIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEK 159 (333)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 333443333333333 3444444433332 234667777877777777765443
No 195
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=73.18 E-value=1.4e+02 Score=32.22 Aligned_cols=135 Identities=14% Similarity=0.195 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q psy13761 255 QFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDAL--KTHAIS 332 (402)
Q Consensus 255 ~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqAL--KaHAEE 332 (402)
.....+..+..+|.|+.+.+.|+-.+-..|...-+.+|.-.-+++..-+..-.....+..+-..-++|-.-| .+.|-.
T Consensus 148 ~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Q 227 (499)
T COG4372 148 DLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQ 227 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777788888888777777777665555554444443333322222222222222222222222 123334
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy13761 333 QLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDD 389 (402)
Q Consensus 333 KLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDE 389 (402)
+...+-...+...++-..++++=.-.+++-+.+++-||-...-..+|.++|-+..-+
T Consensus 228 q~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~ 284 (499)
T COG4372 228 QTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQA 284 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555556666666666677788888888888888888999888876543
No 196
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=72.82 E-value=81 Score=29.31 Aligned_cols=81 Identities=15% Similarity=0.294 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHhhHHH---H-HHhhHHHHHHHHHHHHHHHHHHHH
Q psy13761 314 EELKKQVNKYDALKTHAISQLEKANQD-LDLRNKTYEMETTKLKAMLKKSE---M-QITSLQESLARKTEENAELTSICD 388 (402)
Q Consensus 314 ~rvkkeeQRYqALKaHAEEKLe~ANEE-Iaqvrsk~eaE~~aLqA~LKKeE---m-kv~SLEesLEQKtKENeELTkICD 388 (402)
+..+.....|++.-+.|..+....-.+ .+.+.+.+.++..++.|.|+..= + .+.+.-+ .=|+.--+||.++.=
T Consensus 58 ~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~ 135 (155)
T PRK06569 58 IEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAK--QFRTNKSEAIIKLAV 135 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHH
Confidence 333444444444444455444444444 66667777777788888777531 1 1222222 234555678888888
Q ss_pred HHHHcccc
Q psy13761 389 DLISKLSS 396 (402)
Q Consensus 389 ELIsK~~~ 396 (402)
++|+|+-.
T Consensus 136 ~i~~k~~~ 143 (155)
T PRK06569 136 NIIEKIAG 143 (155)
T ss_pred HHHHHHhC
Confidence 88877643
No 197
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=72.68 E-value=60 Score=27.70 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=19.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q psy13761 365 QITSLQESLARKTEENAELTSICDDLISKLSS 396 (402)
Q Consensus 365 kv~SLEesLEQKtKENeELTkICDELIsK~~~ 396 (402)
...++...+.......+.+..+|..|+.....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (213)
T cd00176 147 KHKELEEELEAHEPRLKSLNELAEELLEEGHP 178 (213)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHcCCC
Confidence 34455555666666677777777777765543
No 198
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=72.44 E-value=39 Score=29.41 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=16.5
Q ss_pred HHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHH
Q psy13761 262 ELEKEKEEVQLHLRNSEIAFNDVHLKYERSKV 293 (402)
Q Consensus 262 kllkERDQa~aDLnS~EkSFSDLhrRYEK~Ke 293 (402)
++....++....++++++.+..+.++|.+.+.
T Consensus 40 ~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~ 71 (158)
T PF03938_consen 40 KLQEKFKALQKELQAKQKELQKLQQKLQSQKA 71 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555555555555555544
No 199
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=72.16 E-value=9.8 Score=33.96 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=34.1
Q ss_pred HHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccccc
Q psy13761 357 AMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSSC 397 (402)
Q Consensus 357 A~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~~~ 397 (402)
..+++.+.++.-.+..+.++.+|.++|.+.|+++|..+..|
T Consensus 104 ~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ia~~ 144 (144)
T PF11221_consen 104 KRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREIARG 144 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56777788888888999999999999999999999988654
No 200
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=72.14 E-value=58 Score=34.55 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhhhhh----hhHHHHHHHHHHHhHHHHHHHHHHhHH
Q psy13761 215 DEKDKLIEKLKKEN------------ASYQKMLNDYENTITQCVNQREN----DKKQFEKYKKELEKEKEEVQLHLRNSE 278 (402)
Q Consensus 215 ~~~~~~~e~l~~~n------------~eM~~Im~EYEktI~qlIeE~eq----~k~~~~~eiqkllkERDQa~aDLnS~E 278 (402)
+|+...+|.|++.+ ..+.+-+..-.+.+..|-+-... =++.++.+++.+..|++.+... |
T Consensus 223 dDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~Q----e 298 (424)
T PF03915_consen 223 DDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQ----E 298 (424)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 46667777777522 22333344444444444433222 3455678999999998887765 5
Q ss_pred HhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhHHHH
Q psy13761 279 IAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHA------ISQLEKANQDLDLRNKTYEMET 352 (402)
Q Consensus 279 kSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHA------EEKLe~ANEEIaqvrsk~eaE~ 352 (402)
.-..||-..++++.+++.. ++.|.++....-..-..|+-+.--.. ..=.+..-.||..+.=.|+..+
T Consensus 299 dL~~DL~eDl~k~~etf~l-------veq~~~~Q~k~~~~~~~r~~~~~~~~~pg~~~~~~~~~VL~EV~aL~PDHE~RL 371 (424)
T PF03915_consen 299 DLLSDLKEDLKKASETFAL-------VEQCTEEQEKSPSRSRNRPVANLPIPEPGEDPHEARDQVLGEVRALQPDHESRL 371 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHCT------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHcccCCCCCCCCccCCCCCCCCCChhhHHHHHHHHHHhcCCCcHHHH
Confidence 6688888888888888776 56666554444433333332111000 1224566677777777787777
Q ss_pred HHHHH
Q psy13761 353 TKLKA 357 (402)
Q Consensus 353 ~aLqA 357 (402)
.|.++
T Consensus 372 eAIer 376 (424)
T PF03915_consen 372 EAIER 376 (424)
T ss_dssp -----
T ss_pred HHHHH
Confidence 66654
No 201
>KOG0050|consensus
Probab=71.95 E-value=1.1e+02 Score=34.00 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhh
Q psy13761 327 KTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITS 368 (402)
Q Consensus 327 KaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~S 368 (402)
-.|+..+|+.++.++.--..-..+|..|+--.+++.|..|.+
T Consensus 572 ~~~~~~~le~~~~e~~~f~~l~~qE~~Al~~R~~~lq~ev~~ 613 (617)
T KOG0050|consen 572 IHHTLKALEEGQRELYTFEFLYRQEIRALPGRLERLQEEVNK 613 (617)
T ss_pred HHHHHHHHHHcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 347888888899999888888999999999998888887765
No 202
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=71.81 E-value=50 Score=29.01 Aligned_cols=35 Identities=20% Similarity=0.072 Sum_probs=24.3
Q ss_pred HHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy13761 352 TTKLKAMLKKSEMQITSLQESLARKTEENAELTSI 386 (402)
Q Consensus 352 ~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkI 386 (402)
+..-.+.|||.+-.+.||.-.-+|.+|.++-|-.=
T Consensus 35 Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~E 69 (102)
T PF10205_consen 35 LKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33346677888888888877777777777665543
No 203
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=71.61 E-value=75 Score=28.38 Aligned_cols=14 Identities=7% Similarity=0.214 Sum_probs=10.9
Q ss_pred HHHHHHHHHHcccc
Q psy13761 383 LTSICDDLISKLSS 396 (402)
Q Consensus 383 LTkICDELIsK~~~ 396 (402)
=-++-|+.|.++|.
T Consensus 149 ~~~li~~~i~~~~~ 162 (164)
T PRK14473 149 HDALIAESLAALGR 162 (164)
T ss_pred HHHHHHHHHHhccc
Confidence 35678899988876
No 204
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=71.39 E-value=94 Score=29.45 Aligned_cols=97 Identities=13% Similarity=0.219 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHH
Q psy13761 224 LKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANED 303 (402)
Q Consensus 224 l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE 303 (402)
.......++..+.+|-++|.. +..+...|-.+.....+++....-...+.+|++.. |=-.-=+
T Consensus 90 a~~d~~~l~e~L~eY~r~i~s---------------vk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~--~~~~K~~ 152 (224)
T cd07623 90 ADTDFYILAELLKDYIGLIGA---------------IKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELS--GRTDKLD 152 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChhHHH
Confidence 556888899999999997765 34466677777777777777777666666666532 1001122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 304 HLRARHSELEEELKKQVNKYDALKTHAISQLEKA 337 (402)
Q Consensus 304 ~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~A 337 (402)
.+++.|.+.+.++....++|+.+.......|.+-
T Consensus 153 ~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF 186 (224)
T cd07623 153 QAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERF 186 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666667777777666655555444
No 205
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=71.24 E-value=1e+02 Score=29.91 Aligned_cols=80 Identities=15% Similarity=0.178 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHh
Q psy13761 215 DEKDKLIEKLKKENASYQKMLNDYEN----TITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYER 290 (402)
Q Consensus 215 ~~~~~~~e~l~~~n~eM~~Im~EYEk----tI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK 290 (402)
.-|...+.+....-.++..+-+.|.. -|..|+.+.++..+.+.....++..|......+|+..-+.|...|+-.+.
T Consensus 70 ~~W~~lL~qt~~~a~~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~ 149 (241)
T cd07656 70 NCWNTLLVQTKQESRDHSTLSDIYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKS 149 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666655556555555543 36678888899999999999999999999999999999999988887776
Q ss_pred hHHH
Q psy13761 291 SKVI 294 (402)
Q Consensus 291 ~Kev 294 (402)
.+.-
T Consensus 150 A~~K 153 (241)
T cd07656 150 AERK 153 (241)
T ss_pred HHHH
Confidence 6553
No 206
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=71.12 E-value=1.1e+02 Score=29.92 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=12.3
Q ss_pred HHHHHHhHHHHHHHHHHhHHHhhHHHH
Q psy13761 259 YKKELEKEKEEVQLHLRNSEIAFNDVH 285 (402)
Q Consensus 259 eiqkllkERDQa~aDLnS~EkSFSDLh 285 (402)
+++.+..+++.+...+...++...++.
T Consensus 136 ~~~~~~~~i~~l~~~~~~~~~~~~~~~ 162 (301)
T PF14362_consen 136 QIARLDAEIAALQAEIDQLEKEIDRAQ 162 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 207
>PRK10698 phage shock protein PspA; Provisional
Probab=71.11 E-value=1e+02 Score=29.63 Aligned_cols=45 Identities=9% Similarity=0.099 Sum_probs=22.0
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhH
Q psy13761 238 YENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFN 282 (402)
Q Consensus 238 YEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFS 282 (402)
=+++|.++|.+.+..-......+..+...+-.+...+...+..-.
T Consensus 25 P~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~ 69 (222)
T PRK10698 25 PQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQV 69 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444444444445555555555444444444333
No 208
>KOG0995|consensus
Probab=70.66 E-value=1.8e+02 Score=32.41 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=12.9
Q ss_pred cccccCccCCCCCCC
Q psy13761 128 LYVQFDPFLKSPVRQ 142 (402)
Q Consensus 128 LYlkFDplLksp~r~ 142 (402)
||...||...+|-|-
T Consensus 112 LY~~Ldp~y~f~~r~ 126 (581)
T KOG0995|consen 112 LYGFLDPDYEFPERI 126 (581)
T ss_pred HHhccCCCcccchhH
Confidence 999999999998663
No 209
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=70.43 E-value=87 Score=28.66 Aligned_cols=95 Identities=11% Similarity=0.157 Sum_probs=45.8
Q ss_pred HHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 262 ELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDL 341 (402)
Q Consensus 262 kllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEI 341 (402)
.+..+.+-..+.+..++.-++.+-..-..+..-+..++.--+.|-+.++....+|...+.+-.. ....|..+-.+.
T Consensus 42 ~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~----~~~~l~~~E~ek 117 (140)
T PF10473_consen 42 CLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSS----LENLLQEKEQEK 117 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHH
Confidence 3333333333333334443333333333333334444444445555555555555555544333 333444444556
Q ss_pred HHHHHhhHHHHHHHHHHhh
Q psy13761 342 DLRNKTYEMETTKLKAMLK 360 (402)
Q Consensus 342 aqvrsk~eaE~~aLqA~LK 360 (402)
.++...+...+..|++.++
T Consensus 118 ~q~~e~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 118 VQLKEESKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666554
No 210
>KOG1899|consensus
Probab=70.20 E-value=2e+02 Score=32.82 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=23.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy13761 361 KSEMQITSLQESLARKTEENAELTSICDD 389 (402)
Q Consensus 361 KeEmkv~SLEesLEQKtKENeELTkICDE 389 (402)
+..+-+.|+=..=+||..-+++|+..-+.
T Consensus 278 ~lk~a~eslm~ane~kdr~ie~lr~~ln~ 306 (861)
T KOG1899|consen 278 TLKNALESLMRANEQKDRFIESLRNYLNN 306 (861)
T ss_pred HHHHHHHHHHhhchhhhhHHHHHHHHhhh
Confidence 66677788888889999999999876654
No 211
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=69.80 E-value=1.1e+02 Score=29.48 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHhhHHHHHHhhHHHHH
Q psy13761 302 EDHLRARHSELEEELKKQVN-KYDALKTHAISQLEKANQDLDLRNKTY-------EMETTKLKAMLKKSEMQITSLQESL 373 (402)
Q Consensus 302 EE~LKk~ieey~~rvkkeeQ-RYqALKaHAEEKLe~ANEEIaqvrsk~-------eaE~~aLqA~LKKeEmkv~SLEesL 373 (402)
.+.|.+.+++...=++.... -|...+..|+..+..|..=+.+|+..+ +.-...++-.|.....++.-|...|
T Consensus 122 ~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l 201 (264)
T PF06008_consen 122 SEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLL 201 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444322 266677777777777777666666553 2222345556666666766666666
Q ss_pred HH---HHHHHHHHHHHHH
Q psy13761 374 AR---KTEENAELTSICD 388 (402)
Q Consensus 374 EQ---KtKENeELTkICD 388 (402)
.. ++++-+.|..+-.
T Consensus 202 ~eA~~~~~ea~~ln~~n~ 219 (264)
T PF06008_consen 202 NEAQNKTREAEDLNRANQ 219 (264)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 65 5555555554433
No 212
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=69.69 E-value=19 Score=35.47 Aligned_cols=17 Identities=53% Similarity=0.921 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHcccc
Q psy13761 380 NAELTSICDDLISKLSS 396 (402)
Q Consensus 380 NeELTkICDELIsK~~~ 396 (402)
-+||++||||+++-+++
T Consensus 91 E~EL~~icddiL~vl~~ 107 (268)
T COG5040 91 ETELTKICDDILSVLEK 107 (268)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35999999999876554
No 213
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=69.46 E-value=1e+02 Score=31.93 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHH
Q psy13761 329 HAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLAR 375 (402)
Q Consensus 329 HAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQ 375 (402)
||...+..|+-.+.......++....|.+..-..+-++.+++..+++
T Consensus 155 ~a~~a~~~A~A~~~~a~~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~ 201 (352)
T COG1566 155 RARAALQAAEAALAAAQAAQKQNLALLESEVSGAQAQVASAEAALDQ 201 (352)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccchhHHHHHHHHHHH
Confidence 44444555555555554555555556666666666666666555544
No 214
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=69.27 E-value=6.9 Score=33.04 Aligned_cols=26 Identities=19% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy13761 330 AISQLEKANQDLDLRNKTYEMETTKL 355 (402)
Q Consensus 330 AEEKLe~ANEEIaqvrsk~eaE~~aL 355 (402)
|+.-+..|..+...+...+.+++..+
T Consensus 87 A~~i~~~A~~~a~~i~~~A~~~~~~l 112 (131)
T PF05103_consen 87 AEEIIEEAQKEAEEIIEEARAEAERL 112 (131)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445444444444444444443
No 215
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=69.01 E-value=79 Score=27.61 Aligned_cols=31 Identities=16% Similarity=0.418 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13761 317 KKQVNKYDALKTHAISQLEKANQDLDLRNKT 347 (402)
Q Consensus 317 kkeeQRYqALKaHAEEKLe~ANEEIaqvrsk 347 (402)
+.+.++|+++....+..++.+..+|+.++..
T Consensus 73 ~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~ 103 (139)
T PF05615_consen 73 KRERENYEQLNEEIEQEIEQAKKEIEELKEE 103 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777666666555443
No 216
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=68.85 E-value=86 Score=27.99 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhh-HHHHHHhhHHHHHHHH--HHHH---HHHHHHHHHHHHcccc
Q psy13761 334 LEKANQDLDLRNKTYEMETTKLKAMLK-KSEMQITSLQESLARK--TEEN---AELTSICDDLISKLSS 396 (402)
Q Consensus 334 Le~ANEEIaqvrsk~eaE~~aLqA~LK-KeEmkv~SLEesLEQK--tKEN---eELTkICDELIsK~~~ 396 (402)
++.|+.+.++...++.+++..-++..+ ....++.++--.+-.| .++. +.=.+++|+.|.+++-
T Consensus 95 ~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~la~~~a~kil~~~l~~~~~~~~lid~~i~~~~~ 163 (164)
T PRK14471 95 KEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVANLSVEIAEKVLRKELSNKEKQHKLVEKMLGDVKL 163 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHhcCC
Confidence 344555555555555554444333322 1222333333333333 1221 1236789999988764
No 217
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=68.74 E-value=1.5e+02 Score=30.71 Aligned_cols=15 Identities=7% Similarity=0.295 Sum_probs=5.6
Q ss_pred hhHHHHHHhhHHHHH
Q psy13761 359 LKKSEMQITSLQESL 373 (402)
Q Consensus 359 LKKeEmkv~SLEesL 373 (402)
+...+.++.+++..+
T Consensus 293 l~~~~~~l~~~~~~l 307 (457)
T TIGR01000 293 ITDLNQKLLELESKI 307 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 218
>KOG4302|consensus
Probab=68.68 E-value=2.1e+02 Score=32.36 Aligned_cols=133 Identities=16% Similarity=0.206 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH---------------------------HHHHHHHHHhHH
Q psy13761 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQ---------------------------FEKYKKELEKEK 267 (402)
Q Consensus 215 ~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~---------------------------~~~eiqkllkER 267 (402)
++++..+..|+.+......-|.+|..+|..+++...-.-.. ....++++..++
T Consensus 163 eelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k 242 (660)
T KOG4302|consen 163 EELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEK 242 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 46777888888899888999999999999888654432221 234456666777
Q ss_pred HHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy13761 268 EEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKA----NEDHLRARHSELEEELKKQVNKYDALKT-HAISQLEKANQDLD 342 (402)
Q Consensus 268 DQa~aDLnS~EkSFSDLhrRYEK~KevIegyKk----NEE~LKk~ieey~~rvkkeeQRYqALKa-HAEEKLe~ANEEIa 342 (402)
-|....|..+=.+..+|+.+-.-.-+=..-|.. .-..--.+-.+....++.+-.|.++||+ |..+-+.+-..||.
T Consensus 243 ~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~Ele 322 (660)
T KOG4302|consen 243 KQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKELIEKKRSELE 322 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 777777777777777776553322222222210 0001122334566777788888888886 34455566666666
Q ss_pred HHHHh
Q psy13761 343 LRNKT 347 (402)
Q Consensus 343 qvrsk 347 (402)
++...
T Consensus 323 el~~~ 327 (660)
T KOG4302|consen 323 ELWRL 327 (660)
T ss_pred HHHHH
Confidence 66554
No 219
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=68.50 E-value=2.6e+02 Score=33.38 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH-----HHHHHHhHHHHHHHHHHhHHHhhHHHH
Q psy13761 219 KLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEK-----YKKELEKEKEEVQLHLRNSEIAFNDVH 285 (402)
Q Consensus 219 ~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~-----eiqkllkERDQa~aDLnS~EkSFSDLh 285 (402)
..+++.+.+..++.+.++.|.+.+.++-.+.+..++.... ....+...-.+..++|..+....+..-
T Consensus 58 ~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~ 129 (1109)
T PRK10929 58 EERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQ 129 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3447777788888888888888777766654433222111 123344444455555555555554443
No 220
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=68.48 E-value=97 Score=28.40 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCV 246 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlI 246 (402)
+.+.++.+-+...+|...+.+|=.++..+-
T Consensus 43 l~~~~~~l~~~~~~l~~~~~e~~~~~~~la 72 (236)
T PF09325_consen 43 LYKSLERLVKRRQELASALAEFGSSFSQLA 72 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444445555555555555555555555443
No 221
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=68.47 E-value=93 Score=28.22 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=11.5
Q ss_pred HHHHHHHHHccccc
Q psy13761 384 TSICDDLISKLSSC 397 (402)
Q Consensus 384 TkICDELIsK~~~~ 397 (402)
.++-|+.|.++|..
T Consensus 158 ~~lid~~i~~~~~~ 171 (173)
T PRK13460 158 KAFIETELAKLGKL 171 (173)
T ss_pred HHHHHHHHHHcccc
Confidence 57789999999874
No 222
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=68.35 E-value=74 Score=28.60 Aligned_cols=67 Identities=24% Similarity=0.292 Sum_probs=41.2
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 258 KYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTH 329 (402)
Q Consensus 258 ~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaH 329 (402)
.++..+-.+..++...+..+......|-..+-.+.... .|+ .|...+..+...+...+.|...|+..
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~----t~~-el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEP----TNE-ELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CHH-HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445555555555555555555555554444444332 233 37888888888888888888888873
No 223
>KOG0247|consensus
Probab=68.32 E-value=1.5e+02 Score=34.15 Aligned_cols=98 Identities=19% Similarity=0.246 Sum_probs=53.4
Q ss_pred HhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH--H
Q psy13761 289 ERSKVIIEGMKANEDHLRARHSELEEELKKQVNK-YDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEM--Q 365 (402)
Q Consensus 289 EK~KevIegyKkNEE~LKk~ieey~~rvkkeeQR-YqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEm--k 365 (402)
...++.|++.+.+-+.+++....+...+.-.++- |..=...-..+|+.+|.+..+.-.+-+...+.+++.+-...+ .
T Consensus 544 ~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E~~~~~~~i~~l~~el~eq~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 623 (809)
T KOG0247|consen 544 NDKKEQIEQLRDEIERLKKENLTTEYSIEILESTEYEEEIEALDQELEEQKMELQQKFSEKKKAMAKVRGILANTSPECS 623 (809)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhHHHHHHHHhhhHHHHhhccchhHHHhhhccccCCCchhhh
Confidence 3445666666777777777777777666665544 222222334455556666666666656666666666555555 2
Q ss_pred Hhh----HHHHHHHHHHHHHHHHHH
Q psy13761 366 ITS----LQESLARKTEENAELTSI 386 (402)
Q Consensus 366 v~S----LEesLEQKtKENeELTkI 386 (402)
+.+ +...|--++.+..+|++|
T Consensus 624 v~~~~~~~~~~l~~~~e~l~~~~~~ 648 (809)
T KOG0247|consen 624 VAAKLLELQSKLWFKDEKLKHLTAI 648 (809)
T ss_pred HHHHHHHHHHHhcccHHHHHHhhcc
Confidence 222 222333344555555554
No 224
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=68.12 E-value=65 Score=35.17 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhhHH
Q psy13761 334 LEKANQDLDLRNKTYEM 350 (402)
Q Consensus 334 Le~ANEEIaqvrsk~ea 350 (402)
|.++-++++++++..++
T Consensus 214 i~~~~~e~d~lk~e~~~ 230 (555)
T TIGR03545 214 LQKIKEEFDKLKKEGKA 230 (555)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 225
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=67.81 E-value=1.6e+02 Score=33.31 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHH
Q psy13761 234 MLNDYENTITQCVNQRENDKKQFEKY 259 (402)
Q Consensus 234 Im~EYEktI~qlIeE~eq~k~~~~~e 259 (402)
++.+...-+..+|++.++++...+..
T Consensus 505 ~~~~~~~~~~~li~~L~~~~~~~e~~ 530 (771)
T TIGR01069 505 FYGEFKEEINVLIEKLSALEKELEQK 530 (771)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555444443333
No 226
>KOG0976|consensus
Probab=67.71 E-value=2.6e+02 Score=33.02 Aligned_cols=120 Identities=18% Similarity=0.197 Sum_probs=68.6
Q ss_pred HHHHHHhHHHHHHHHHHhHHHhhH----------HHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 259 YKKELEKEKEEVQLHLRNSEIAFN----------DVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKT 328 (402)
Q Consensus 259 eiqkllkERDQa~aDLnS~EkSFS----------DLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKa 328 (402)
.-++++++--|+..++..|+.-=. ||-.--.-+-+....++.--+.|-+.+.+...+|+..+...+.||.
T Consensus 226 ~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 226 NTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ 305 (1265)
T ss_pred HHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555443211 1111111111222233333455666677777777777777777764
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHH
Q psy13761 329 ---HAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTE 378 (402)
Q Consensus 329 ---HAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtK 378 (402)
.|..-.+.|.+=+..-..+|.++.++++--|+-...++.++.+.+....|
T Consensus 306 t~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEK 358 (1265)
T KOG0976|consen 306 TRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEK 358 (1265)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 45556666666666667777888888887777777776666554443333
No 227
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=67.65 E-value=24 Score=35.71 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=54.8
Q ss_pred HHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 262 ELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALK 327 (402)
Q Consensus 262 kllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALK 327 (402)
.++.---.+.+.+|.+|-+=.||++|++.-|-+.-..-.||.-+|..+.-+++++++.+.--+.|-
T Consensus 214 sVldRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa~~l 279 (311)
T PF04642_consen 214 SVLDRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQAEML 279 (311)
T ss_pred HHHHHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 355555567788999999999999999999999999999999999999999999888866554443
No 228
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=67.22 E-value=1.5e+02 Score=30.17 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhHHHHHHhhHHHHH
Q psy13761 349 EMETTKLKAMLKKSEMQITSLQESL 373 (402)
Q Consensus 349 eaE~~aLqA~LKKeEmkv~SLEesL 373 (402)
..++..+++.+...+-++..++..+
T Consensus 226 ~~~~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 226 EKELETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666665555
No 229
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=66.91 E-value=1.1e+02 Score=28.65 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHh
Q psy13761 237 DYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEG 297 (402)
Q Consensus 237 EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIeg 297 (402)
+...-+..++.+.++.++.+.....++.+++.....+|...-+.|..+++-.++.+...+.
T Consensus 91 ~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~ 151 (251)
T cd07653 91 NVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEK 151 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666676777777777778888888888877777777777777777766655444
No 230
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=66.87 E-value=98 Score=27.90 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=21.9
Q ss_pred HHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhh
Q psy13761 261 KELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGM 298 (402)
Q Consensus 261 qkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegy 298 (402)
+.+..|.|.+......++.-+-+|-.++.+.-.=|..+
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL 40 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSL 40 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666665555555553
No 231
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=66.26 E-value=1.1e+02 Score=28.34 Aligned_cols=44 Identities=16% Similarity=0.276 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhH
Q psy13761 326 LKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSL 369 (402)
Q Consensus 326 LKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SL 369 (402)
++.+++.++...-....+-++.....+..|++..|..++++.++
T Consensus 72 ~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~ 115 (158)
T PF09744_consen 72 LRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNL 115 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44445555554444555555555555555555555555444443
No 232
>KOG0978|consensus
Probab=66.21 E-value=2.4e+02 Score=32.14 Aligned_cols=6 Identities=17% Similarity=0.335 Sum_probs=2.7
Q ss_pred ccccch
Q psy13761 115 KAPISE 120 (402)
Q Consensus 115 ~ssfkE 120 (402)
.|+|.|
T Consensus 271 ~Ssl~e 276 (698)
T KOG0978|consen 271 ISSLQE 276 (698)
T ss_pred HHHHHH
Confidence 444443
No 233
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=65.90 E-value=6.7 Score=33.10 Aligned_cols=85 Identities=13% Similarity=0.261 Sum_probs=8.9
Q ss_pred HHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 263 LEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSE-LEEELKKQVNKYDALKTHAISQLEKANQDL 341 (402)
Q Consensus 263 llkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~iee-y~~rvkkeeQRYqALKaHAEEKLe~ANEEI 341 (402)
+..+++.+...++.+.....++-.+-..++.++...++.-+.++..+.. ...-+..-+.....+-.-|..++.....++
T Consensus 37 l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~eA~~i~~~A~~~a~~i~~~A~~~~~~l~~~~ 116 (131)
T PF05103_consen 37 LQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEEEAEEIIEEAQKEAEEIIEEARAEAERLREEI 116 (131)
T ss_dssp HHHHHHHHHHHHHCCCCT--------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444444444444444433333332222222222 222222223333344444444444444444
Q ss_pred HHHHHh
Q psy13761 342 DLRNKT 347 (402)
Q Consensus 342 aqvrsk 347 (402)
+.+++.
T Consensus 117 ~~lk~~ 122 (131)
T PF05103_consen 117 EELKRQ 122 (131)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 444433
No 234
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=65.87 E-value=76 Score=30.72 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=32.7
Q ss_pred HHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHH
Q psy13761 345 NKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAEL 383 (402)
Q Consensus 345 rsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeEL 383 (402)
+......+..++.-|.-.+.+|..|+.-|..|..|.+.|
T Consensus 155 ~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 155 RSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667788888889999999999999999998888776
No 235
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=65.48 E-value=1.3e+02 Score=28.79 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 349 EMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLIS 392 (402)
Q Consensus 349 eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIs 392 (402)
..++..|++.+++.+..+.+++..+...+++.+++..+=.+|-.
T Consensus 62 ~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666666555544
No 236
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=65.27 E-value=1e+02 Score=27.46 Aligned_cols=108 Identities=14% Similarity=0.256 Sum_probs=0.0
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHH
Q psy13761 205 LISPERNSTSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDV 284 (402)
Q Consensus 205 ii~~l~~s~~~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDL 284 (402)
++|+..|.+..++...+...-.+..++..|+.+|-.++..+-...++.|-.+=..-..+..+-.+-.+....+..-.++-
T Consensus 13 Vldp~~~~~t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek 92 (120)
T PF14931_consen 13 VLDPEKADQTQELKEECKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEK 92 (120)
T ss_pred ecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhHHHHHhhHhhHHHHHHHHHHH
Q psy13761 285 HLKYERSKVIIEGMKANEDHLRARHSEL 312 (402)
Q Consensus 285 hrRYEK~KevIegyKkNEE~LKk~ieey 312 (402)
-.-.||++.-.+-+++=|...+..|+.+
T Consensus 93 ~~eLERl~~E~~sL~kve~eQ~~~i~~~ 120 (120)
T PF14931_consen 93 KMELERLRSEYESLQKVEQEQNELIQKL 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 237
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=65.13 E-value=1.3e+02 Score=28.65 Aligned_cols=148 Identities=13% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHH--
Q psy13761 242 ITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQ-- 319 (402)
Q Consensus 242 I~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkke-- 319 (402)
+..++-+...--..+-..+.++.+--. -..+..++..+|..+..--+++=..=..+..|=...-..+..|..++.+.
T Consensus 24 l~~f~keRa~iE~eYak~L~kLak~~~-~~~e~gsl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K 102 (239)
T cd07647 24 LEDFLKQRAKAEEDYGKALLKLSKSAG-PGDEIGTLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREKQKEERK 102 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---------------HHHHHHHHHhhHHHHHHhhHHHHHHHH---
Q psy13761 320 -----VNKYDALKTHAISQLEKANQDLDLRNKTYE---------------METTKLKAMLKKSEMQITSLQESLARK--- 376 (402)
Q Consensus 320 -----eQRYqALKaHAEEKLe~ANEEIaqvrsk~e---------------aE~~aLqA~LKKeEmkv~SLEesLEQK--- 376 (402)
-.+.+..++.....+++|.+.+...-+..+ .++.+++.+++|.+..+..-...-...
T Consensus 103 ~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~ 182 (239)
T cd07647 103 KTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGC 182 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----HHHHHHHHHHHHHH
Q psy13761 377 -----TEENAELTSICDDL 390 (402)
Q Consensus 377 -----tKENeELTkICDEL 390 (402)
.+=.++++.+||.+
T Consensus 183 l~~~~~~~~~~~~~~~~~~ 201 (239)
T cd07647 183 LEDARVEWESEHATACQVF 201 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 238
>KOG0999|consensus
Probab=64.93 E-value=2.5e+02 Score=31.80 Aligned_cols=147 Identities=13% Similarity=0.227 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHh
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQ------RENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYER 290 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE------~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK 290 (402)
++..++.+++++.-+. .+|+.|....|-- .-.+|...+..+..+..+-|-++.+|.-+-.+|...|.-+.+
T Consensus 6 aeq~ve~lr~eierLT---~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk 82 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLT---EELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKK 82 (772)
T ss_pred hhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554443 3555544433321 122344456666777777777777777777777777665544
Q ss_pred hHHHHHhhHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHH
Q psy13761 291 SKVIIEGMKANEDHLRARH----SELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQI 366 (402)
Q Consensus 291 ~KevIegyKkNEE~LKk~i----eey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv 366 (402)
. ...=-.||++|-..- +.|..+|-+.+.-...+.. --+....-|+-|.++.+.....-.++.+.-+|..-.+
T Consensus 83 ~---~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~-el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~el 158 (772)
T KOG0999|consen 83 V---ARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQ-ELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDEL 158 (772)
T ss_pred h---hccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Confidence 3 233345666665432 3566677777666655543 2233344455555555555555566666666655555
Q ss_pred hhHH
Q psy13761 367 TSLQ 370 (402)
Q Consensus 367 ~SLE 370 (402)
.-+.
T Consensus 159 Ke~K 162 (772)
T KOG0999|consen 159 KEYK 162 (772)
T ss_pred HHHH
Confidence 4443
No 239
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=64.62 E-value=1.4e+02 Score=29.00 Aligned_cols=82 Identities=20% Similarity=0.298 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hhh-----------HHHHHHHHHHhhHHHHHHhhHH
Q psy13761 309 HSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRN-------KTY-----------EMETTKLKAMLKKSEMQITSLQ 370 (402)
Q Consensus 309 ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvr-------sk~-----------eaE~~aLqA~LKKeEmkv~SLE 370 (402)
+++...+++..-.-+..|| -+.++|..-|+|+..+- .+- .--+.+++-.+.--+-|+..|+
T Consensus 43 m~evNrrlQ~hl~EIR~LK-e~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE 121 (195)
T PF10226_consen 43 MKEVNRRLQQHLNEIRGLK-EVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELE 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555566666 35666666676665431 111 1114456666666677777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy13761 371 ESLARKTEENAELTSICDDLI 391 (402)
Q Consensus 371 esLEQKtKENeELTkICDELI 391 (402)
...+...+||-||-.||=-|=
T Consensus 122 ~kq~~L~rEN~eLKElcl~LD 142 (195)
T PF10226_consen 122 DKQEELIRENLELKELCLYLD 142 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHh
Confidence 888889999999999996553
No 240
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=64.38 E-value=2.6e+02 Score=31.79 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy13761 326 LKTHAISQLEKANQDLDLRNKTY 348 (402)
Q Consensus 326 LKaHAEEKLe~ANEEIaqvrsk~ 348 (402)
++..|.+-+..|..++.++.++.
T Consensus 571 ~~~~a~~~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 571 AEKEAQQAIKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445554444444433
No 241
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=64.36 E-value=44 Score=27.35 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHH
Q psy13761 310 SELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKT 377 (402)
Q Consensus 310 eey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKt 377 (402)
++|..+.+.|+.-|..|+.-.+ ..+.+.++|.+++....-+|.+|.++++..+
T Consensus 17 ~~y~~q~~~Wq~sy~~Lq~~~~---------------~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 17 QSYEKQQQEWQSSYADLQHMFE---------------QTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566777778888888774332 2344455899999999999999988887654
No 242
>KOG0018|consensus
Probab=64.33 E-value=3.2e+02 Score=32.84 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=18.8
Q ss_pred HHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHH
Q psy13761 278 EIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVN 321 (402)
Q Consensus 278 EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQ 321 (402)
++.....-..|.+.++.|+.+.+-=..+-..-+.++++++...|
T Consensus 309 ~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q 352 (1141)
T KOG0018|consen 309 EKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQ 352 (1141)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333444444444444444444444444444444444433
No 243
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=64.19 E-value=1.6e+02 Score=29.51 Aligned_cols=152 Identities=13% Similarity=0.184 Sum_probs=74.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHH----HHHhhHHHHHhhHhhHHHHHHHHHHHHHH
Q psy13761 240 NTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHL----KYERSKVIIEGMKANEDHLRARHSELEEE 315 (402)
Q Consensus 240 ktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhr----RYEK~KevIegyKkNEE~LKk~ieey~~r 315 (402)
+.+.++-++.+.-++..+..+..+..+-+++.+.+...-.-.+.|.- -|-=----|.++..|=..||+.-+ ..
T Consensus 63 ~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qq---dE 139 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQ---DE 139 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 33445555555444445555555666666666555544444443321 111111124455555444443332 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy13761 316 LKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLS 395 (402)
Q Consensus 316 vkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~ 395 (402)
+......++...+.-+.++....++|-..-. ..=...++-.|++.-..++.+...+.+=.+++++|...-..|.+.|+
T Consensus 140 ldel~e~~~~el~~l~~~~q~k~~~il~~~~--~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~ 217 (258)
T PF15397_consen 140 LDELNEMRQMELASLSRKIQEKKEEILSSAA--EKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVE 217 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444433111 11112233344444477777777777777888888877777777665
Q ss_pred c
Q psy13761 396 S 396 (402)
Q Consensus 396 ~ 396 (402)
.
T Consensus 218 ~ 218 (258)
T PF15397_consen 218 Q 218 (258)
T ss_pred H
Confidence 4
No 244
>KOG1962|consensus
Probab=64.12 E-value=91 Score=30.61 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy13761 347 TYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISK 393 (402)
Q Consensus 347 k~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK 393 (402)
+..++...|+..+++.+.+....+.......|.-+++....|-|..+
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee 201 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEE 201 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 34445555555566666666666666666666666666666666543
No 245
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=63.70 E-value=1e+02 Score=26.87 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=15.6
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 293 VIIEGMKANEDHLRARHSELEEELKKQVNKYDALK 327 (402)
Q Consensus 293 evIegyKkNEE~LKk~ieey~~rvkkeeQRYqALK 327 (402)
+++..+++|-+.|.+.+..+...+....++++.+.
T Consensus 94 eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~ 128 (140)
T PRK03947 94 EAIEILDKRKEELEKALEKLEEALQKLASRIAQLA 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 246
>KOG0249|consensus
Probab=63.57 E-value=2.9e+02 Score=32.10 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHH
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIE 296 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIe 296 (402)
+.+.++++++.|.++......-+--... .+.--....+-++-.++||-|+..+-|.++.-...+-++|+.+.-.=+
T Consensus 165 ~~kl~~~~qe~naeL~rarqreemneeh----~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~ 240 (916)
T KOG0249|consen 165 TRKLEEQLEELNAELQRARQREKMNEEH----NKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKD 240 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh----ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666665544332211100 011111134567778999999999999999999999999999999999
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy13761 297 GMKANEDHLRARHSELEEELKKQVNK-YDALKTHAISQLE 335 (402)
Q Consensus 297 gyKkNEE~LKk~ieey~~rvkkeeQR-YqALKaHAEEKLe 335 (402)
-+..++|.|+..+..+.......+++ -.-+..|++.-.+
T Consensus 241 rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~~~~~~e~~~~ 280 (916)
T KOG0249|consen 241 KLRTDIEDLRGELDQLRRSSLEKEQELRDHLRTYAERRRE 280 (916)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHh
Confidence 99999999999998887433333322 2234444444433
No 247
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=62.94 E-value=1.4e+02 Score=28.31 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13761 222 EKLKKENASYQKMLNDYENTITQCVN 247 (402)
Q Consensus 222 e~l~~~n~eM~~Im~EYEktI~qlIe 247 (402)
+.+-+.-.+|...+++|-.++..|-.
T Consensus 36 e~lv~~r~ela~~~~~f~~s~~~L~~ 61 (224)
T cd07623 36 ESLVNHRKELALNTGSFAKSAAMLSN 61 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445667788888888888877654
No 248
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=62.78 E-value=1.9e+02 Score=29.88 Aligned_cols=21 Identities=24% Similarity=0.169 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy13761 312 LEEELKKQVNKYDALKTHAIS 332 (402)
Q Consensus 312 y~~rvkkeeQRYqALKaHAEE 332 (402)
...|+..+..-|+.|+.++..
T Consensus 110 ~LkrL~MLv~a~~qL~~~~~~ 130 (383)
T PF04100_consen 110 TLKRLQMLVTAVEQLKELAKK 130 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 344555556666666665543
No 249
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=62.65 E-value=1.4e+02 Score=30.30 Aligned_cols=84 Identities=19% Similarity=0.302 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHH-------hhHHHHHHHHhhHHHHHhhHhhH
Q psy13761 230 SYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEI-------AFNDVHLKYERSKVIIEGMKANE 302 (402)
Q Consensus 230 eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~Ek-------SFSDLhrRYEK~KevIegyKkNE 302 (402)
++.+...++|-+++-+-+..+..+... +.-++.+.|..|+...|+...+ .|++ .+-|..++.-+..+++..
T Consensus 93 elqkl~~eLe~vLs~~q~KnekLke~L-erEq~wL~Eqqql~~sL~~r~~elk~~~~~~se-~rv~~el~~K~~~~k~~~ 170 (268)
T PF11802_consen 93 ELQKLISELEMVLSTVQSKNEKLKEDL-EREQQWLDEQQQLLESLNKRHEELKNQVETFSE-SRVFQELKTKIEKIKEYK 170 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHH
Confidence 344555555555554444333333332 2224455555555555444333 5555 444566666666666666
Q ss_pred HHHHHHHHHHHHH
Q psy13761 303 DHLRARHSELEEE 315 (402)
Q Consensus 303 E~LKk~ieey~~r 315 (402)
+.|..++.++.+.
T Consensus 171 e~Ll~~LgeFLee 183 (268)
T PF11802_consen 171 EKLLSFLGEFLEE 183 (268)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665544
No 250
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=62.61 E-value=1.5e+02 Score=28.48 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Q psy13761 331 ISQLEKANQDLDLRNKTYEMETTKL 355 (402)
Q Consensus 331 EEKLe~ANEEIaqvrsk~eaE~~aL 355 (402)
++-++.|+.+++++..++.+++..=
T Consensus 89 ~~i~~~A~~ea~~~~~~a~~~ie~E 113 (246)
T TIGR03321 89 QRLLDEAREEADEIREKWQEALRRE 113 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666555555554433
No 251
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=62.40 E-value=2.5e+02 Score=30.94 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 216 EKDKLIEKLKKENASYQKMLNDYE 239 (402)
Q Consensus 216 ~~~~~~e~l~~~n~eM~~Im~EYE 239 (402)
|++..+.+++++..+-..-+..|.
T Consensus 198 ~L~~ql~~l~~~l~~aE~~l~~fk 221 (754)
T TIGR01005 198 FLAPEIADLSKQSRDAEAEVAAYR 221 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444444455553
No 252
>KOG4809|consensus
Probab=62.39 E-value=2.7e+02 Score=31.33 Aligned_cols=141 Identities=15% Similarity=0.182 Sum_probs=82.8
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHH
Q psy13761 239 ENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKK 318 (402)
Q Consensus 239 EktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkk 318 (402)
|++|..+-+...+..++..++|....+|+.-+.++++-+-...+|--...--+|+-...++.--..+-+.+.+..=-+++
T Consensus 312 er~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEq 391 (654)
T KOG4809|consen 312 ERIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQ 391 (654)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 57888887777777777788888888888777777777666555544433333443333333333333333333322322
Q ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 319 QVNKY-----DALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDL 390 (402)
Q Consensus 319 eeQRY-----qALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDEL 390 (402)
..... |-.|+|--+-=..+|-+.+..++..+.+..-.+-.++|.+..+ ++|=|+++=|..+
T Consensus 392 kkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaev-----------drlLeilkevene 457 (654)
T KOG4809|consen 392 KKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEV-----------DRLLEILKEVENE 457 (654)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhh
Confidence 22222 2334555555556777888888887777777776666665543 3455556656554
No 253
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=62.08 E-value=1.2e+02 Score=27.08 Aligned_cols=57 Identities=26% Similarity=0.379 Sum_probs=30.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 256 FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANED--HLRARHSELEEELKKQVNKYDALKTHAIS 332 (402)
Q Consensus 256 ~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE--~LKk~ieey~~rvkkeeQRYqALKaHAEE 332 (402)
++.++.++..+||.+.+++-. -...|++ ...+++..+...++..++||+++=.---+
T Consensus 35 l~~el~~l~~~r~~l~~Eiv~--------------------l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 35 LQEELARLEAERDELREEIVK--------------------LMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445566666666666655432 2222222 24455566666666666666665443333
No 254
>PRK14011 prefoldin subunit alpha; Provisional
Probab=61.68 E-value=1.2e+02 Score=27.76 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=23.5
Q ss_pred HHHHHHhHHHHHHHHHHhHHHhhHHH---HHHHHhhHHHHHhhHhhH
Q psy13761 259 YKKELEKEKEEVQLHLRNSEIAFNDV---HLKYERSKVIIEGMKANE 302 (402)
Q Consensus 259 eiqkllkERDQa~aDLnS~EkSFSDL---hrRYEK~KevIegyKkNE 302 (402)
+++++...-+++.+.+..+-.+++.| ..+|..++++++++..+-
T Consensus 4 elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~ 50 (144)
T PRK14011 4 ELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSE 50 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 44445555555555555555544444 345666667666665443
No 255
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=61.55 E-value=1e+02 Score=26.22 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=4.5
Q ss_pred HhhHHHHHhhH
Q psy13761 289 ERSKVIIEGMK 299 (402)
Q Consensus 289 EK~KevIegyK 299 (402)
+..+++++.++
T Consensus 33 ~~~~~~L~~l~ 43 (126)
T TIGR00293 33 ETAIETLEDLK 43 (126)
T ss_pred HHHHHHHHhcc
Confidence 33344444443
No 256
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=61.41 E-value=2.6e+02 Score=30.97 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHH
Q psy13761 318 KQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKT 377 (402)
Q Consensus 318 keeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKt 377 (402)
.-...|..+|..++..+..-.-||+.+.++...--+-.+.++-..+-+++|.+-.|++..
T Consensus 512 ~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~ 571 (622)
T COG5185 512 EANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELK 571 (622)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHH
Confidence 334455555555555555555555555555444444444444455555556555555543
No 257
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=61.30 E-value=2.4e+02 Score=30.39 Aligned_cols=41 Identities=22% Similarity=0.069 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhH
Q psy13761 329 HAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSL 369 (402)
Q Consensus 329 HAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SL 369 (402)
.|-..|+.+..-+..+...--.+...+++.-.+.......|
T Consensus 126 ~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L 166 (593)
T PF06248_consen 126 DAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENL 166 (593)
T ss_pred HHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHH
Confidence 46666777777776653333334555555444444443333
No 258
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=61.27 E-value=1.4e+02 Score=27.59 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=19.5
Q ss_pred HHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 294 IIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHA 330 (402)
Q Consensus 294 vIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHA 330 (402)
+|+-|+++.+.|.+.++.+...+.+..++++.+..-+
T Consensus 95 Aie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~ 131 (145)
T COG1730 95 AIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA 131 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555544433
No 259
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=60.47 E-value=65 Score=26.72 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhH
Q psy13761 214 SDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNS 277 (402)
Q Consensus 214 ~~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~ 277 (402)
+++||+..= ++-+|++-++...+-.++.+=+.. -.-.=|.++++|||+++..|..+
T Consensus 14 QnEWDa~mL----E~f~LRk~l~~~rqELs~aLYq~D----AA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 14 QNEWDALML----ENFTLRKQLDQTRQELSHALYQHD----AACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHhHHHHHHHHHhc
Confidence 467887653 334444444444333333332211 12234678999999999988764
No 260
>KOG4848|consensus
Probab=60.39 E-value=1.6e+02 Score=29.07 Aligned_cols=60 Identities=22% Similarity=0.189 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHH
Q psy13761 325 ALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELT 384 (402)
Q Consensus 325 ALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELT 384 (402)
.++..-.+++.---++|+.-..+.-+=++.++|++.+.+-+-+.-+..++....|+.|+-
T Consensus 121 i~~~~e~~k~~~Re~~iak~m~K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~eiqe~f 180 (225)
T KOG4848|consen 121 ILYTKEPEKFTFREAEIAKNMKKYPQTLAKYEASLVKQEQEADAKEVRLERLIREIQEYF 180 (225)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHh
Confidence 333333444444455566666666666666666666666666665555555555555553
No 261
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=59.85 E-value=1.4e+02 Score=27.29 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=10.0
Q ss_pred HHHHHHHHHHcccc
Q psy13761 383 LTSICDDLISKLSS 396 (402)
Q Consensus 383 LTkICDELIsK~~~ 396 (402)
-.++-|+.|.++|.
T Consensus 168 ~~~lid~~i~~l~~ 181 (184)
T PRK13455 168 ANALIDEAIKEVEA 181 (184)
T ss_pred HHHHHHHHHHHHhh
Confidence 35777888887764
No 262
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=59.61 E-value=1.4e+02 Score=27.20 Aligned_cols=68 Identities=24% Similarity=0.325 Sum_probs=51.3
Q ss_pred HHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 268 EEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKAN 338 (402)
Q Consensus 268 DQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~AN 338 (402)
+.+..-|.+++..|.+ +-+..-.+|.++...-+.++..++.+.++-+..+.|-+.||..-...|+.++
T Consensus 25 e~~~dtLe~i~~~~~~---K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~g 92 (162)
T PF05565_consen 25 EAIADTLESIEDEIEE---KADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAAG 92 (162)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344455566666655 5566666788888888999999999999999999999999988777776654
No 263
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=59.48 E-value=1e+02 Score=26.30 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=21.4
Q ss_pred HHhHHHHHHHHHHhHHHhhHHH---HHHHHhhHHHHHhhHh
Q psy13761 263 LEKEKEEVQLHLRNSEIAFNDV---HLKYERSKVIIEGMKA 300 (402)
Q Consensus 263 llkERDQa~aDLnS~EkSFSDL---hrRYEK~KevIegyKk 300 (402)
+....+++..+++++.+.+..| ...|+.++.++..+.+
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~ 44 (129)
T cd00584 4 LAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444555555555555555554 3456666666666654
No 264
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=59.05 E-value=2.6e+02 Score=30.12 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH-----------HHHHhhHHH
Q psy13761 303 DHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKS-----------EMQITSLQE 371 (402)
Q Consensus 303 E~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKe-----------Emkv~SLEe 371 (402)
+.|-..+-.-.++|..+..+.+.=|.|++.-|..+.+.-+.+.+.+++..+.|||.--|. .-+..+|.+
T Consensus 284 eelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~k 363 (442)
T PF06637_consen 284 EELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAK 363 (442)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677788999999999999999999999999999999999999999888753321 224567889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccC
Q psy13761 372 SLARKTEENAELTSICDDLISKLSSCVKL 400 (402)
Q Consensus 372 sLEQKtKENeELTkICDELIsK~~~~~~~ 400 (402)
+|+.|.+|.+.|--=-+-=++.++.|++-
T Consensus 364 eLeekkreleql~~q~~v~~saLdtCika 392 (442)
T PF06637_consen 364 ELEEKKRELEQLKMQLAVKTSALDTCIKA 392 (442)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 99999999888766555555656555543
No 265
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=58.99 E-value=24 Score=36.18 Aligned_cols=77 Identities=16% Similarity=0.295 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 312 LEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLI 391 (402)
Q Consensus 312 y~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELI 391 (402)
+..||...++|...|....+ .+..+..+...-.....+.+.-|....|+.-++|-.+-+.-+.. ...+..|+.++|
T Consensus 142 l~~Ri~e~Eeris~lEd~~~-~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiPEg~e~~---~k~~~~~l~~ii 217 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIE-EIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIPEGEEEE---GKGPENFLEEII 217 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEecCCCcccc---ccCHHHHHHHHH
Confidence 44555555555555554433 34445555555555566667778888888888888886653321 123445555555
Q ss_pred H
Q psy13761 392 S 392 (402)
Q Consensus 392 s 392 (402)
.
T Consensus 218 ~ 218 (370)
T PF02994_consen 218 P 218 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 266
>PF15294 Leu_zip: Leucine zipper
Probab=58.69 E-value=2.1e+02 Score=29.05 Aligned_cols=73 Identities=22% Similarity=0.321 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhH--HH-------HHHHHHHhHHHhhHHHH
Q psy13761 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKE--KE-------EVQLHLRNSEIAFNDVH 285 (402)
Q Consensus 215 ~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkE--RD-------Qa~aDLnS~EkSFSDLh 285 (402)
.-+.+.|..|+.+|..|+.-+.-.|+-...++.|+.+-... +..+... .. --..++..+|..++.+=
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~----L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK 203 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQ----LKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALK 203 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhccccccccccchhhHHHHHHHHH
Confidence 45777888999999999999999998888888775543333 3333321 11 12234555666666665
Q ss_pred HHHHhh
Q psy13761 286 LKYERS 291 (402)
Q Consensus 286 rRYEK~ 291 (402)
.-|++.
T Consensus 204 ~e~ek~ 209 (278)
T PF15294_consen 204 SELEKA 209 (278)
T ss_pred HHHHHH
Confidence 555543
No 267
>KOG0976|consensus
Probab=58.61 E-value=3.7e+02 Score=31.80 Aligned_cols=169 Identities=17% Similarity=0.231 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHH--
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVI-- 294 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~Kev-- 294 (402)
....+..||..++.+---....-.||+.+-+++.+.+.+.+..-.++-++-+.+.++-+.+-.-|-|||.+-+.+-+.
T Consensus 104 ~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~ 183 (1265)
T KOG0976|consen 104 HESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNM 183 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHH
Confidence 444555555555444333333334444444444444444444444556666677777777777777777765544332
Q ss_pred ---------HHhhHhhHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 295 ---------IEGMKANEDHLRARHSELEEE--------------------LKKQVNKYDALKTHAISQLEKANQDLDLRN 345 (402)
Q Consensus 295 ---------IegyKkNEE~LKk~ieey~~r--------------------vkkeeQRYqALKaHAEEKLe~ANEEIaqvr 345 (402)
.+.-+.||+.+++--++..++ +.+...+++.|- -+.+----|.+.-
T Consensus 184 q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~lt-----p~rk~~s~i~E~d 258 (1265)
T KOG0976|consen 184 EFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLT-----PLRKTCSMIEEQD 258 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-----hHhhhhHHHHHHH
Confidence 233345555555544433222 222222222211 1111111222222
Q ss_pred HhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 346 KTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDL 390 (402)
Q Consensus 346 sk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDEL 390 (402)
--+++-...+.-..+..+.+..-|.+++.||+--+.+|-.--|+|
T Consensus 259 ~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~l 303 (1265)
T KOG0976|consen 259 MDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTL 303 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 233333344444555666677777777777777777777666665
No 268
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=58.43 E-value=3e+02 Score=30.68 Aligned_cols=128 Identities=20% Similarity=0.296 Sum_probs=78.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhH--------------HHHHhhHhhHHHHHHHHHHHHHHHHHHH-
Q psy13761 256 FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSK--------------VIIEGMKANEDHLRARHSELEEELKKQV- 320 (402)
Q Consensus 256 ~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~K--------------evIegyKkNEE~LKk~ieey~~rvkkee- 320 (402)
.+++++.+..--+++...+.+=+.+||.|-...+... +.+.++++-|-..+..+..|..++....
T Consensus 352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR 431 (570)
T COG4477 352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKR 431 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655555555555555555555444 4444555555555555555555544332
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy13761 321 -----------NKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDD 389 (402)
Q Consensus 321 -----------QRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDE 389 (402)
++|..|..||..+++.++.++.++.-+ +.++.+.++..+..+.-|++. +-+.=+=..+...
T Consensus 432 ~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pin----m~~v~~~v~~a~~~m~~l~~~----t~e~ve~a~LaE~ 503 (570)
T COG4477 432 YMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPIN----MEAVSALVDIATEDMNTLEDE----TEEVVENAVLAEQ 503 (570)
T ss_pred HHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCc----HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 568889999999999999998887765 556777788888777766553 3333333444455
Q ss_pred HH
Q psy13761 390 LI 391 (402)
Q Consensus 390 LI 391 (402)
||
T Consensus 504 lI 505 (570)
T COG4477 504 LI 505 (570)
T ss_pred HH
Confidence 54
No 269
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=57.68 E-value=75 Score=25.84 Aligned_cols=53 Identities=21% Similarity=0.187 Sum_probs=28.3
Q ss_pred HHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 273 HLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDA 325 (402)
Q Consensus 273 DLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqA 325 (402)
+|..+|.-+..|..+|++++.-=.-++.....+...-..+.+++..-.+|-++
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777654444444444444444333333333333333
No 270
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=57.57 E-value=1.2e+02 Score=25.61 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=34.8
Q ss_pred HHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q psy13761 353 TKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSS 396 (402)
Q Consensus 353 ~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~~ 396 (402)
..+.+.+.+......-|...|++...+...|...|.|+..++..
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777788888999999999999999998877654
No 271
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=57.51 E-value=1.9e+02 Score=28.20 Aligned_cols=26 Identities=12% Similarity=0.322 Sum_probs=12.7
Q ss_pred HHHHHHHhHHHhhHHHHHHHHhhHHH
Q psy13761 269 EVQLHLRNSEIAFNDVHLKYERSKVI 294 (402)
Q Consensus 269 Qa~aDLnS~EkSFSDLhrRYEK~Kev 294 (402)
++.+.+...+..+....+.|++.+..
T Consensus 111 ~~~~~l~~ak~~l~~a~~~~~r~~~L 136 (331)
T PRK03598 111 QARAAVKQAQAAYDYAQNFYNRQQGL 136 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555543
No 272
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=57.48 E-value=3.4e+02 Score=31.01 Aligned_cols=11 Identities=27% Similarity=0.205 Sum_probs=7.1
Q ss_pred ccCcccccccc
Q psy13761 202 TANLISPERNS 212 (402)
Q Consensus 202 ~~~ii~~l~~s 212 (402)
+..+++.+..|
T Consensus 255 v~DLfSEl~~~ 265 (717)
T PF09730_consen 255 VSDLFSELNLS 265 (717)
T ss_pred cchhhhhcchH
Confidence 45666777766
No 273
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=57.45 E-value=1.1e+02 Score=25.21 Aligned_cols=36 Identities=25% Similarity=0.135 Sum_probs=29.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhh
Q psy13761 256 FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERS 291 (402)
Q Consensus 256 ~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~ 291 (402)
.-..+..+..++..+...+..+|.....++.++...
T Consensus 35 d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~ 70 (143)
T PF05130_consen 35 DIDELEELVEEKQELLEELRELEKQRQQLLAKLGAE 70 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 456788899999999999999999999998887644
No 274
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=57.04 E-value=2.8e+02 Score=29.87 Aligned_cols=76 Identities=18% Similarity=0.186 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHhhHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 319 QVNKYDALKTHAISQLEKANQDLDLRNKTYE------METTKLKAMLKKSEMQ--ITSLQESLARKTEENAELTSICDDL 390 (402)
Q Consensus 319 eeQRYqALKaHAEEKLe~ANEEIaqvrsk~e------aE~~aLqA~LKKeEmk--v~SLEesLEQKtKENeELTkICDEL 390 (402)
...+|..++.+-...|...=..+-.+..... .........+...+.. ++..=..|...-.-...|.++|+.|
T Consensus 155 Lk~e~~~lr~~L~~~L~~~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~~~~L~~vl~AL~~lg~L~~~l~~~~~~L 234 (593)
T PF06248_consen 155 LKDEYSELRENLQYQLSEEWERLVQWDSPSSKQLSSPESTLKVTLHVSKSESQESLQDVLQALEILGILDYKLKKFSKFL 234 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheeecCCCcccccccccceEEEEEeecCcccchHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 3444555555555555444444444433333 1122222334444444 4444344444447788899999999
Q ss_pred HHcc
Q psy13761 391 ISKL 394 (402)
Q Consensus 391 IsK~ 394 (402)
|..+
T Consensus 235 l~~i 238 (593)
T PF06248_consen 235 LEHI 238 (593)
T ss_pred HHHH
Confidence 8653
No 275
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=56.97 E-value=3.7e+02 Score=31.30 Aligned_cols=153 Identities=19% Similarity=0.274 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHH--HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhh-------------
Q psy13761 227 ENASYQKMLNDYENTITQCVNQRENDKKQ--FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERS------------- 291 (402)
Q Consensus 227 ~n~eM~~Im~EYEktI~qlIeE~eq~k~~--~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~------------- 291 (402)
.-.||..+|.|-|..|..|-+=.....-. ..=.+|-+..|+-|++..|.-+...|.+= .|-+|.
T Consensus 354 ~DsE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreq-e~~~k~~~~~~~n~El~sL 432 (861)
T PF15254_consen 354 EDSEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQ-EKAEKTSGSQDCNLELFSL 432 (861)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHH-HhhcccCCCcccchhhHHH
Confidence 45567777777777776654322111111 11124667778888888887777766551 111110
Q ss_pred -------HHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
Q psy13761 292 -------KVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEM 364 (402)
Q Consensus 292 -------KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEm 364 (402)
-.-+..-.++-|.|....+++.+.++.+...+..+..-..+| ..++-+-++.+..|++.++..|.-.=.
T Consensus 433 qSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ek----d~~l~~~kq~~d~e~~rik~ev~eal~ 508 (861)
T PF15254_consen 433 QSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEK----DQELLENKQQFDIETTRIKIEVEEALV 508 (861)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 011222334445555555555555555544444444333332 456677788999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHH
Q psy13761 365 QITSLQESLARKTEENAELT 384 (402)
Q Consensus 365 kv~SLEesLEQKtKENeELT 384 (402)
++.+++=.|+.-.+||.=|.
T Consensus 509 ~~k~~q~kLe~sekEN~iL~ 528 (861)
T PF15254_consen 509 NVKSLQFKLEASEKENQILG 528 (861)
T ss_pred HHHHHhhhHHHHHhhhhHhh
Confidence 99999999999999997663
No 276
>PF13166 AAA_13: AAA domain
Probab=56.63 E-value=2.9e+02 Score=29.87 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q psy13761 231 YQKMLNDYENTI 242 (402)
Q Consensus 231 M~~Im~EYEktI 242 (402)
+......|...+
T Consensus 289 l~~~~~~~~~~~ 300 (712)
T PF13166_consen 289 LEKAIKKLEKAI 300 (712)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 277
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=56.62 E-value=2.5e+02 Score=29.10 Aligned_cols=35 Identities=31% Similarity=0.378 Sum_probs=22.9
Q ss_pred HHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy13761 351 ETTKLKAMLKKSEMQITSLQESLARKTEENAELTS 385 (402)
Q Consensus 351 E~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTk 385 (402)
+=..|=..|-+..-++..|+..+....-|.+||..
T Consensus 127 ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ 161 (319)
T PF09789_consen 127 EREDLVEQLEKLREQIEQLERDLQSLLDEKEELVT 161 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666777777777777777777777654
No 278
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=56.59 E-value=45 Score=33.08 Aligned_cols=81 Identities=11% Similarity=0.197 Sum_probs=49.2
Q ss_pred hhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhH
Q psy13761 290 RSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSL 369 (402)
Q Consensus 290 K~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SL 369 (402)
-.++-|..|+.+...|...++.|+++|..++.+.+.+.......-.. . ... .............++|++..|.-|
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~--~--~~~-~~~~~~~~~~de~I~rEeeEIreL 251 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSD--D--EES-EESSEDSVDTDEDIRREEEEIREL 251 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--c--ccc-ccccccchhHHHHHHHHHHHHHHH
Confidence 44555667777777788888888888888888887775422222111 0 111 233334445666777777777776
Q ss_pred HHHHHH
Q psy13761 370 QESLAR 375 (402)
Q Consensus 370 EesLEQ 375 (402)
|..+.+
T Consensus 252 E~k~~~ 257 (259)
T PF08657_consen 252 ERKKRE 257 (259)
T ss_pred HHHHHh
Confidence 665543
No 279
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=56.51 E-value=3e+02 Score=30.42 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhHH---HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHH
Q psy13761 234 MLNDYENTITQCVNQRENDKKQ---FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHL 305 (402)
Q Consensus 234 Im~EYEktI~qlIeE~eq~k~~---~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~L 305 (402)
|-.-|..-|.+|+.+++.-... +.++++.+.+--+.+..+..+++.....+-.++.++.+-++.-+.|.|.-
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~Q 488 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQ 488 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5556777777777665553221 34556666666666666666666666666666666666666666665543
No 280
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=56.10 E-value=3.7 Score=44.83 Aligned_cols=72 Identities=26% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHhhHHHHHHhhHHHHHHHHH
Q psy13761 306 RARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKT---YEMETTKLKAMLKKSEMQITSLQESLARKT 377 (402)
Q Consensus 306 Kk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk---~eaE~~aLqA~LKKeEmkv~SLEesLEQKt 377 (402)
...+.+....+.+-.+-..++...-..-+++|..-|..+..+ +..|+.+|+.++.--+-+|.+|+..+++..
T Consensus 575 ~~ki~~Le~~L~~k~~e~~~~eer~k~~lekak~vi~~Ld~k~~~~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k 649 (713)
T PF05622_consen 575 SQKIEELEEALQKKEEEMRAMEERYKKYLEKAKEVIKTLDPKQNPSSPEIQALKKQLQEKDRRIESLEKELEKSK 649 (713)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHhhccChhccCChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334444444444444333333333334566677766666666 557788888877777777788877776544
No 281
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=56.09 E-value=3e+02 Score=29.94 Aligned_cols=126 Identities=14% Similarity=0.186 Sum_probs=60.9
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy13761 257 EKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQ-VNKYDALKTHAISQLE 335 (402)
Q Consensus 257 ~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkke-eQRYqALKaHAEEKLe 335 (402)
..++..+..+...+.+++..+++.+...-+..+ +-+..+.+.++.|+..-+.+..++-++ .++|. +
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~---ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~----------~ 132 (475)
T PRK10361 66 NNEVRSLQSINTSLEADLREVTTRMEAAQQHAD---DKIRQMINSEQRLSEQFENLANRIFEHSNRRVD----------E 132 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Confidence 444555555555555555555555444433332 233445555666666666665554433 22332 2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy13761 336 KANQDLDLRNKTYEMETTKLKAMLKKSE----MQITSLQESLARKTEENAELTSICDDLISKLS 395 (402)
Q Consensus 336 ~ANEEIaqvrsk~eaE~~aLqA~LKKeE----mkv~SLEesLEQKtKENeELTkICDELIsK~~ 395 (402)
...+.|+.+-+=....+..++.++.... -...+|..+|.+...-|..++.=...|...+.
T Consensus 133 ~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALk 196 (475)
T PRK10361 133 QNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALK 196 (475)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2223333333333334444443333222 22355556666666666666665555555553
No 282
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=55.60 E-value=2.3e+02 Score=31.99 Aligned_cols=84 Identities=14% Similarity=0.335 Sum_probs=42.6
Q ss_pred HhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhh
Q psy13761 289 ERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITS 368 (402)
Q Consensus 289 EK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~S 368 (402)
.++..+++-|..--..|+..+.++...+.+++.+...++.....++.+ +.||. .-+.++..|+-.|....+++.-
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~-~rei~----~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRK-DREIR----ARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445566666666666666666666666555533221 22222 2223344455555555555555
Q ss_pred HHHHHHHHH
Q psy13761 369 LQESLARKT 377 (402)
Q Consensus 369 LEesLEQKt 377 (402)
|++.|.+..
T Consensus 500 L~~~l~~l~ 508 (652)
T COG2433 500 LERKLAELR 508 (652)
T ss_pred HHHHHHHHH
Confidence 555554443
No 283
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=55.45 E-value=1.2e+02 Score=28.23 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhHHHHHHhhHHHHHHHHHH
Q psy13761 349 EMETTKLKAMLKKSEMQITSLQESLARKTE 378 (402)
Q Consensus 349 eaE~~aLqA~LKKeEmkv~SLEesLEQKtK 378 (402)
.+|+..|...||.+|-+|..++..|.+...
T Consensus 104 D~Ea~~L~~KLkeEq~kv~~ME~~v~elas 133 (152)
T PF11500_consen 104 DAEAMRLAEKLKEEQEKVAEMERHVTELAS 133 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888899999888887776655443
No 284
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=55.42 E-value=1.9e+02 Score=31.74 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=5.9
Q ss_pred cccccCccCC
Q psy13761 128 LYVQFDPFLK 137 (402)
Q Consensus 128 LYlkFDplLk 137 (402)
+-+.+-|||+
T Consensus 84 ~~v~l~pLL~ 93 (555)
T TIGR03545 84 ASLDWDALLR 93 (555)
T ss_pred EEeccHHHhc
Confidence 4455666665
No 285
>KOG0239|consensus
Probab=54.99 E-value=3.5e+02 Score=30.44 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=27.0
Q ss_pred HHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 287 KYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKT 328 (402)
Q Consensus 287 RYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKa 328 (402)
.|...+..+..+..+....++.+.....++..+.+++..|+.
T Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~ 262 (670)
T KOG0239|consen 221 NYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELND 262 (670)
T ss_pred hhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666667777777777777666666666666555555543
No 286
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=54.85 E-value=1.6e+02 Score=26.55 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHH
Q psy13761 230 SYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKE 268 (402)
Q Consensus 230 eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERD 268 (402)
-+..+|++-...|...+.+.++.++..+...........
T Consensus 34 pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~ 72 (167)
T PRK14475 34 ALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAERE 72 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777766666664444433333333
No 287
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=54.79 E-value=3.1e+02 Score=29.75 Aligned_cols=121 Identities=16% Similarity=0.191 Sum_probs=62.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 256 FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANED---HLRARHSELEEELKKQVNKYDALKTHAIS 332 (402)
Q Consensus 256 ~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE---~LKk~ieey~~rvkkeeQRYqALKaHAEE 332 (402)
.+.++..+.++.-.+..+|.-+-+.+-||-.|. +.+.+.+++-++ +|-..-+++...+.+..-+-.-|+..++.
T Consensus 121 v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl---~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ 197 (499)
T COG4372 121 VRQELAAARQNLAKAQQELARLTKQAQDLQTRL---KTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQ 197 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555666666665543 444555554443 33444444554455555555566666554
Q ss_pred HHHHHHHHHHHHHHh---hHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHH
Q psy13761 333 QLEKANQDLDLRNKT---YEMETTKLKAMLKKSEMQITSLQESLARKTEEN 380 (402)
Q Consensus 333 KLe~ANEEIaqvrsk---~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKEN 380 (402)
++.--.+++.-... -..|++.+.|.+--..-+++.+...+.||.+++
T Consensus 198 -ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~i 247 (499)
T COG4372 198 -IEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQI 247 (499)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443444333222 233455555555556666666666666666554
No 288
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=54.62 E-value=2.2e+02 Score=27.84 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHh-hHHHHHHhhHHHHHHHHH--H-HHHHH-HHHHHHHHHcccc
Q psy13761 332 SQLEKANQDLDLRNKTYEMETTKLKAML-KKSEMQITSLQESLARKT--E-ENAEL-TSICDDLISKLSS 396 (402)
Q Consensus 332 EKLe~ANEEIaqvrsk~eaE~~aLqA~L-KKeEmkv~SLEesLEQKt--K-ENeEL-TkICDELIsK~~~ 396 (402)
+.++.|.+++++++.++.+++..=+... +...-++.++--.+..|. + =+.++ .++.|.+|.+++.
T Consensus 90 ~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la~~~A~kiL~~~~d~~~~~~lid~~i~~l~~ 159 (250)
T PRK14474 90 HLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQMVKIIRAALADLANATLEQQIVGIFIARLEH 159 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcc
Confidence 3345566666665555554443332222 112222322222222220 0 02233 4888999888765
No 289
>KOG1962|consensus
Probab=54.62 E-value=2.2e+02 Score=27.99 Aligned_cols=97 Identities=21% Similarity=0.258 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHH
Q psy13761 229 ASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRAR 308 (402)
Q Consensus 229 ~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ 308 (402)
.=+.-|+..+-..|.+++..... .++.++++++..-+++-=+ +.+=....+..-++|+..
T Consensus 107 LFL~lvI~R~~~ll~~l~~l~~~---------~~~~~~~~~lk~~~~~~~~-----------~~~~~~~~~~~~~kL~~e 166 (216)
T KOG1962|consen 107 LFLSLVIRRLHTLLRELATLRAN---------EKAMKENEALKKQLENSSK-----------LEEENDKLKADLEKLETE 166 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---------HHHHHHHHHHHHhhhcccc-----------hhhhHHHHHhhHHHHHHH
Confidence 34556777888888877766443 3344455555544433211 111111222333456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy13761 309 HSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYE 349 (402)
Q Consensus 309 ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~e 349 (402)
++.-...++..+..+.+|+..++. -+.|++++-.+|+
T Consensus 167 l~~~~~~Le~~~~~~~al~Kq~e~----~~~EydrLlee~~ 203 (216)
T KOG1962|consen 167 LEKKQKKLEKAQKKVDALKKQSEG----LQDEYDRLLEEYS 203 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHH
Confidence 666667777777788888766554 4566766665543
No 290
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=54.49 E-value=50 Score=29.43 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHh
Q psy13761 335 EKANQDLDLRNKTYEMETTKLKAMLKKSEMQIT 367 (402)
Q Consensus 335 e~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~ 367 (402)
..+|.+|++++..+++++..|++.+...+--++
T Consensus 24 ~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~ 56 (149)
T PF07352_consen 24 AEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQ 56 (149)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888888777777766655543
No 291
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=54.17 E-value=1e+02 Score=28.61 Aligned_cols=55 Identities=13% Similarity=0.291 Sum_probs=27.0
Q ss_pred HHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy13761 292 KVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLK 360 (402)
Q Consensus 292 KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LK 360 (402)
.+|+.-++.|=..+...+.++...|+. .|..+|.+++.+.......+....+.||
T Consensus 26 ~Ev~~aik~~sd~~~~~l~~~~~~l~e--------------eik~~n~~~~e~l~~~~~kl~et~~~L~ 80 (155)
T PF07464_consen 26 QEVVKAIKEQSDSVAQQLQNVSSSLQE--------------EIKDANPEAEEALKQLKTKLEETAEKLR 80 (155)
T ss_dssp S-SSHHHHHHHHHHHHHHHHHHHHHHH--------------HHTT-SSTHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH--------------HHHhcChhHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666555555444 4444444444444444444444444444
No 292
>PF13514 AAA_27: AAA domain
Probab=54.04 E-value=4.2e+02 Score=30.95 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13761 216 EKDKLIEKLKKENASYQKMLNDYENTITQCVNQ 248 (402)
Q Consensus 216 ~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE 248 (402)
.....+..++.....|..-+..|+..+..+...
T Consensus 740 ~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~ 772 (1111)
T PF13514_consen 740 EALAEIRELRRRIEQMEADLAAFEEQVAALAER 772 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777778888888888888888887754
No 293
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=53.81 E-value=1.6e+02 Score=26.14 Aligned_cols=13 Identities=8% Similarity=0.424 Sum_probs=9.2
Q ss_pred HHHHHHHHHcccc
Q psy13761 384 TSICDDLISKLSS 396 (402)
Q Consensus 384 TkICDELIsK~~~ 396 (402)
.++-|+.|.+++-
T Consensus 144 ~~li~~~i~~~~~ 156 (159)
T PRK09173 144 SELFKDALAQVKT 156 (159)
T ss_pred HHHHHHHHHHHhh
Confidence 4777888877653
No 294
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=53.79 E-value=3.4e+02 Score=29.94 Aligned_cols=94 Identities=20% Similarity=0.278 Sum_probs=49.5
Q ss_pred HhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy13761 279 IAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAM 358 (402)
Q Consensus 279 kSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~ 358 (402)
.-+.+|...--.+..-...|..+-+.|.+++...+...+..... |+ -|..++....+|+.-.+++|+. +
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~ee---L~-~a~~~i~~LqDEL~TTr~NYE~-------Q 488 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEE---LK-EANQNISRLQDELETTRRNYEE-------Q 488 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHhhHHH-------H
Confidence 34444444444444444566666666666665443332222211 11 2334455555555555555554 4
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHH
Q psy13761 359 LKKSEMQITSLQESLARKTEENAEL 383 (402)
Q Consensus 359 LKKeEmkv~SLEesLEQKtKENeEL 383 (402)
|.-+--.+.||.+.|.+.+.+++-|
T Consensus 489 Ls~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 489 LSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777777777777776554
No 295
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=53.56 E-value=3e+02 Score=29.14 Aligned_cols=126 Identities=13% Similarity=0.160 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH-HHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHH
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKE-LEKEKEEVQLHLRNSEIAFNDVHLKYERSKVII 295 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqk-llkERDQa~aDLnS~EkSFSDLhrRYEK~KevI 295 (402)
|++.++.+.........-+-.|=..+.++.+.....-...+.++.+ +..-|+.........|+.|..+-.+ +|+
T Consensus 328 l~~~~E~~a~~~~~~~~~L~~f~~~~~~lwd~h~~~l~~~e~~l~~~l~~~r~~~~~~~q~~E~~Ld~~~d~---lRq-- 402 (473)
T PF14643_consen 328 LDKSFEELAKQTEAQSEDLFKFFQEAAQLWDEHRKKLSKQEEELEKRLEQCREKHDQENQEKEAKLDIALDR---LRQ-- 402 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHh--
Confidence 5555566665555555556666666777776655544444444433 5555555555666677777665332 232
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy13761 296 EGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEM 350 (402)
Q Consensus 296 egyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~ea 350 (402)
..++++|+.|++.....++..+.+|..--..+......==.-|......+..
T Consensus 403 ---~s~ee~L~~~l~~~~~~Ld~Ie~~Y~~fh~~~~~~~~~yP~~i~~e~~~Y~~ 454 (473)
T PF14643_consen 403 ---ASSEEKLKEHLEKALDLLDQIEEEYEDFHKKQTAIVMEYPEMILKELESYSE 454 (473)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2578999999999999999999999987766555554444444444333333
No 296
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=53.11 E-value=1.7e+02 Score=26.32 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=23.0
Q ss_pred HHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHH
Q psy13761 263 LEKEKEEVQLHLRNSEIAFNDVHLKYERSKVI 294 (402)
Q Consensus 263 llkERDQa~aDLnS~EkSFSDLhrRYEK~Kev 294 (402)
.....+.+.+.|+..-..+..+-.++.+++.+
T Consensus 50 ~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~ 81 (126)
T PF09403_consen 50 EKQEAEAAEAELAELKELYAEIEEKIEKLKQD 81 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 34555677777777777777777788877776
No 297
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=52.86 E-value=2e+02 Score=26.98 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 305 LRARHSELEEELKKQVNKYDALKTHAISQLEK 336 (402)
Q Consensus 305 LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ 336 (402)
|+..+.++...+..+..+++++..+.++....
T Consensus 132 L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~ 163 (189)
T PF10211_consen 132 LEEEKEELEKQVQELKNKCEQLEKREEELRQE 163 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555555555444444433
No 298
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=52.80 E-value=2.4e+02 Score=27.77 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy13761 314 EELKKQVNKYDAL 326 (402)
Q Consensus 314 ~rvkkeeQRYqAL 326 (402)
..+..+..|++++
T Consensus 204 k~~~~~~~k~e~~ 216 (297)
T PF02841_consen 204 KEIEEEQAKAEAA 216 (297)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444433
No 299
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=52.56 E-value=2.8e+02 Score=28.58 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=94.2
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHH
Q psy13761 209 ERNSTSDEKDKLIEKLKKENASYQKMLND-YENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLK 287 (402)
Q Consensus 209 l~~s~~~~~~~~~e~l~~~n~eM~~Im~E-YEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrR 287 (402)
..||. +.+... ++....-..|+..|.. ...++..|-......-..+...|.....-++++..+|..+...++++-+-
T Consensus 203 ~~~s~-~ni~~a-~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~ 280 (384)
T PF03148_consen 203 EEFSN-ENIQRA-EKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKN 280 (384)
T ss_pred HHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45552 334444 4444555566665553 35555555555555555566777777777777777777777666666555
Q ss_pred HHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy13761 288 YERSKVIIEGMKANEDHLRARHSELEEELKKQVNK---------YDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAM 358 (402)
Q Consensus 288 YEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQR---------YqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~ 358 (402)
++.++.. +.+-..-++--+.| .+.-+.+|...|-.=-.+|......-+..+...++.
T Consensus 281 i~~L~~a--------------i~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~ 346 (384)
T PF03148_consen 281 IEDLEKA--------------IRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEAS 346 (384)
T ss_pred HHHHHHH--------------HHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444 43333333333333 456778888777444466777777777777777777
Q ss_pred hhHHHHHHhhHHHHHHHHHH
Q psy13761 359 LKKSEMQITSLQESLARKTE 378 (402)
Q Consensus 359 LKKeEmkv~SLEesLEQKtK 378 (402)
++........|+..|.-|..
T Consensus 347 l~~L~~~~~~Le~di~~K~~ 366 (384)
T PF03148_consen 347 LQKLERTRLRLEEDIAVKNN 366 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777664
No 300
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=52.51 E-value=4e+02 Score=30.26 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=23.2
Q ss_pred HHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 356 KAMLKKSEMQITSLQESLARKTEENAELTSICDDLI 391 (402)
Q Consensus 356 qA~LKKeEmkv~SLEesLEQKtKENeELTkICDELI 391 (402)
.-.++..+-++..|+..|+.+.++.++|-+=...|-
T Consensus 473 ~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 473 DREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566677777777777777777766655554
No 301
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=52.44 E-value=2.9e+02 Score=28.62 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 216 EKDKLIEKLKKENASYQKMLNDY 238 (402)
Q Consensus 216 ~~~~~~e~l~~~n~eM~~Im~EY 238 (402)
+++....+++.+..+-..-+..|
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444445555
No 302
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=51.53 E-value=1e+02 Score=24.69 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHH
Q psy13761 348 YEMETTKLKAMLKKSEMQITSLQESLARKTEENAELT 384 (402)
Q Consensus 348 ~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELT 384 (402)
.++...++.-.|+-.+.++..|+..++.+.++.+||-
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444566777888889999999999999999998863
No 303
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=51.38 E-value=1.6e+02 Score=25.36 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhhHHHH
Q psy13761 334 LEKANQDLDLRNKTYEMET 352 (402)
Q Consensus 334 Le~ANEEIaqvrsk~eaE~ 352 (402)
++.|++++++...++.+++
T Consensus 92 ~~~a~~ea~~~~~~a~~~i 110 (140)
T PRK07353 92 LAEAQAEAQASKEKARREI 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333
No 304
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=50.67 E-value=1.5e+02 Score=24.77 Aligned_cols=58 Identities=16% Similarity=0.299 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHH
Q psy13761 231 YQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYE 289 (402)
Q Consensus 231 M~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYE 289 (402)
|-.|=.||+.....+-.-+. .+..++..+..-+.|-++.+..+..||.++..+=.+||
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~-~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YE 63 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKH-QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYE 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677776666555433 66667777888888888888888888887777766664
No 305
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=50.66 E-value=2.8e+02 Score=27.96 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhH
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCV----NQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSK 292 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlI----eE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~K 292 (402)
|....++....-.+-..+-+.|-.-|+.-. .-+++..+.+.+.+.++..|++....+|+..-+.|.+.=+-.++.|
T Consensus 72 W~~~L~~Te~~A~~~~~~ae~l~~~~a~~~k~~r~~ke~~~Kk~~e~~~~lq~El~~~~~EL~KaKK~Y~~~cq~~e~~R 151 (260)
T cd07677 72 WKSFLEGTMQVAQSRINICENYKNLISEPARTVRLYKEQQLKRCVDQLTKIQAELQETVKDLAKGKKKYFETEQMAHAVR 151 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 555555555444444445555555444422 2234445667788999999999999999998888887777777766
Q ss_pred HHHH
Q psy13761 293 VIIE 296 (402)
Q Consensus 293 evIe 296 (402)
+..+
T Consensus 152 eK~~ 155 (260)
T cd07677 152 EKAD 155 (260)
T ss_pred HHHH
Confidence 6553
No 306
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=50.42 E-value=2.3e+02 Score=26.81 Aligned_cols=54 Identities=13% Similarity=0.187 Sum_probs=35.4
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhH
Q psy13761 239 ENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSK 292 (402)
Q Consensus 239 EktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~K 292 (402)
..-|..+..+..+.++.+.....++.+.+......|...-+.|....+.++..+
T Consensus 88 ~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~ 141 (236)
T cd07651 88 EEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYT 141 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 334444455555666667777778888888887777777777666666665444
No 307
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=49.94 E-value=1.1e+02 Score=25.82 Aligned_cols=56 Identities=18% Similarity=0.289 Sum_probs=42.9
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH
Q psy13761 298 MKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSE 363 (402)
Q Consensus 298 yKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeE 363 (402)
+.+.-++.|+.+.+|+.+++.++.++.-+ =|.+|-++.+...--..-|.+.|+...
T Consensus 6 i~~eieK~k~Kiae~Q~rlK~Le~qk~E~----------EN~EIv~~VR~~~mtp~eL~~~L~~~~ 61 (83)
T PF14193_consen 6 IRAEIEKTKEKIAELQARLKELEAQKTEA----------ENLEIVQMVRSMKMTPEELAAFLRAMK 61 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44445567788888888888887766543 588999999998888888888888764
No 308
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=49.57 E-value=2.1e+02 Score=26.12 Aligned_cols=16 Identities=6% Similarity=0.291 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHcccc
Q psy13761 381 AELTSICDDLISKLSS 396 (402)
Q Consensus 381 eELTkICDELIsK~~~ 396 (402)
+.-.+|-|+.|.++|.
T Consensus 157 ~~~~~lI~~~i~~~~~ 172 (173)
T PRK13453 157 QDQKALVDKYLKEAGD 172 (173)
T ss_pred HHHHHHHHHHHHhhCC
Confidence 3456788888888763
No 309
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=49.35 E-value=3.8e+02 Score=29.17 Aligned_cols=27 Identities=7% Similarity=0.087 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHhHHHhhHHHHHHHHhh
Q psy13761 265 KEKEEVQLHLRNSEIAFNDVHLKYERS 291 (402)
Q Consensus 265 kERDQa~aDLnS~EkSFSDLhrRYEK~ 291 (402)
.++..+.+.+..++.+=..|-..|+.+
T Consensus 92 ~~~~~~~ek~~~l~~~~~~L~~~F~~L 118 (475)
T PRK10361 92 AAQQHADDKIRQMINSEQRLSEQFENL 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 310
>PF13514 AAA_27: AAA domain
Probab=49.04 E-value=4.9e+02 Score=30.36 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHH
Q psy13761 255 QFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYE 289 (402)
Q Consensus 255 ~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYE 289 (402)
....++..+..+..++...++.++..+.+....|.
T Consensus 677 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 711 (1111)
T PF13514_consen 677 QLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQ 711 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555544
No 311
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=49.03 E-value=1.8e+02 Score=25.38 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHH
Q psy13761 231 YQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEE 269 (402)
Q Consensus 231 M~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQ 269 (402)
+..+|++-...|...+.+.+..+..++..+.+......+
T Consensus 29 i~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~ 67 (156)
T PRK05759 29 IMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAE 67 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666555444444333333333333
No 312
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=48.82 E-value=1.3e+02 Score=25.52 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=25.1
Q ss_pred hHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 291 SKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHA 330 (402)
Q Consensus 291 ~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHA 330 (402)
..++++-++++-+.|.+.+..+...+....+.+.++..++
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666655544
No 313
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=48.82 E-value=79 Score=25.08 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=22.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHh
Q psy13761 256 FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYER 290 (402)
Q Consensus 256 ~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK 290 (402)
....+..+.+|.+++...+..++.++-||..=||=
T Consensus 12 ~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~ 46 (55)
T PF05377_consen 12 IESSINTVKKENEEISESVEKIEENVKDLLSLYEV 46 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666666653
No 314
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=48.75 E-value=2.2e+02 Score=26.12 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHH
Q psy13761 329 HAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESL 373 (402)
Q Consensus 329 HAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesL 373 (402)
.+..+|..||..|..++.+ ......|++.+...|-++.......
T Consensus 31 ~~k~ql~~~d~~i~~Lk~~-~~d~eeLk~~i~~lq~~~~~~~~~~ 74 (155)
T PF06810_consen 31 NLKTQLKEADKQIKDLKKS-AKDNEELKKQIEELQAKNKTAKEEY 74 (155)
T ss_pred HHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677788888877773 4455556666666666655333333
No 315
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.72 E-value=3e+02 Score=27.83 Aligned_cols=117 Identities=21% Similarity=0.276 Sum_probs=55.1
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHH----HHH-------
Q psy13761 258 KYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKY----DAL------- 326 (402)
Q Consensus 258 ~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRY----qAL------- 326 (402)
.++..+.++.-.+..++.++.....++..+-...++=+...+.+=..|++.|.+...+|...+.-| .+|
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t 117 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTAT 117 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Confidence 334444444444444444444444444444444444444444444444444444444444333222 121
Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHH
Q psy13761 327 -----------------KTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLA 374 (402)
Q Consensus 327 -----------------KaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLE 374 (402)
+..|-..+-.|+..|-.-...-+..+..-++.|.+..-.+..+...++
T Consensus 118 ~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e 182 (265)
T COG3883 118 SYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELE 182 (265)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344455566665555555555565556666555555554444333
No 316
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=48.55 E-value=2.8e+02 Score=27.32 Aligned_cols=80 Identities=8% Similarity=0.137 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhhhhHHHHHHHHHHHhHHHH-HHHHHHhHHHhhHHHHHHHHh
Q psy13761 216 EKDKLIEKLKKENASYQKMLNDYENTIT----QCVNQRENDKKQFEKYKKELEKEKEE-VQLHLRNSEIAFNDVHLKYER 290 (402)
Q Consensus 216 ~~~~~~e~l~~~n~eM~~Im~EYEktI~----qlIeE~eq~k~~~~~eiqkllkERDQ-a~aDLnS~EkSFSDLhrRYEK 290 (402)
-|...+++...--.++..+-+++..-|. .++.+.++.++.+...-+++..|++. ...+|+.+-+.|.++-+-.+.
T Consensus 66 sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~~~~~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~Y~~~~~~~e~ 145 (234)
T cd07686 66 SWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMMIKDKQQVKKSYIGVHQQIEAEMYKVTKTELEKLKCSYRQLTKEVNS 145 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4666667777766777777777766554 66677778888877777889999975 668888888888877777766
Q ss_pred hHHHH
Q psy13761 291 SKVII 295 (402)
Q Consensus 291 ~KevI 295 (402)
.|+-.
T Consensus 146 ar~K~ 150 (234)
T cd07686 146 AKEKY 150 (234)
T ss_pred HHHHH
Confidence 66544
No 317
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=48.41 E-value=3.3e+02 Score=28.20 Aligned_cols=137 Identities=18% Similarity=0.208 Sum_probs=88.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhH-----------HHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 256 FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSK-----------VIIEGMKANEDHLRARHSELEEELKKQVNKYD 324 (402)
Q Consensus 256 ~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~K-----------evIegyKkNEE~LKk~ieey~~rvkkeeQRYq 324 (402)
.++++.....-...|..|.+--.+|=.||=.-|-+-+ .-+++++.|-+.|-..+...+..+...+..+.
T Consensus 89 LEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh 168 (305)
T PF14915_consen 89 LETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELH 168 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554444444444444444444444444444444 46889999999999999888888877766655
Q ss_pred HHHH----------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy13761 325 ALKT----------HAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKL 394 (402)
Q Consensus 325 ALKa----------HAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~ 394 (402)
-.+. |+.--|..+--.+-.+...++.+ ++++.+---+-.|+++.|.|..-||-=|-.=+||.-+|.
T Consensus 169 ~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne----~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~ 244 (305)
T PF14915_consen 169 HTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNE----QDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKA 244 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 33444555555555555555555 455666666778999999999999988878788777665
Q ss_pred cc
Q psy13761 395 SS 396 (402)
Q Consensus 395 ~~ 396 (402)
..
T Consensus 245 ~~ 246 (305)
T PF14915_consen 245 DN 246 (305)
T ss_pred HH
Confidence 53
No 318
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=48.26 E-value=3.8e+02 Score=29.72 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=27.6
Q ss_pred HHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHH
Q psy13761 278 EIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKK 318 (402)
Q Consensus 278 EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkk 318 (402)
+.+|+-+-.++..++.-+..+...=+.|+..+..+..+|..
T Consensus 495 ~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 495 DRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556667777777777777777777777777777665
No 319
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=47.86 E-value=1e+02 Score=24.49 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=10.7
Q ss_pred HHHhhHHHHHHHHHHhhHHHHHHhhHH
Q psy13761 344 RNKTYEMETTKLKAMLKKSEMQITSLQ 370 (402)
Q Consensus 344 vrsk~eaE~~aLqA~LKKeEmkv~SLE 370 (402)
+....+.++..|+..++...-++.++.
T Consensus 26 ~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 26 VVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444445555555555555544443
No 320
>KOG3366|consensus
Probab=47.84 E-value=1.9e+02 Score=27.63 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Q psy13761 305 LRARHSELEEELKKQVNKYDALK----------THAISQLEKANQDLDLRNKTYEMETTKLKAMLKKS 362 (402)
Q Consensus 305 LKk~ieey~~rvkkeeQRYqALK----------aHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKe 362 (402)
+|+.+ ....-|+..+..|.+|| .........++.+|..-.+.-.+++.-|+..|.+.
T Consensus 58 Yrk~v-a~a~~VD~~ek~y~slk~v~~~~~ky~~~vda~~k~~~~~~ke~~~~s~~~iq~l~k~le~v 124 (172)
T KOG3366|consen 58 YRKVV-ANAGLVDKYEKKYDSLKPVPVDEDKYLKEVDAEEKAAVKEIKEYESLSKKRIQELEKELEKV 124 (172)
T ss_pred HHHHh-hhhHHHHHHHHHHHhccccCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 34455566666666666 22333444555666666666666655555555443
No 321
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=47.82 E-value=28 Score=40.15 Aligned_cols=100 Identities=26% Similarity=0.260 Sum_probs=60.9
Q ss_pred HHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy13761 278 EIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKA 357 (402)
Q Consensus 278 EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA 357 (402)
+.++.-++..+..++++..-+|.+.+.+. .++.+.+++++.+++.+.||. . .+.+....+.+
T Consensus 704 ~~a~~~~~~~~~~l~~~a~~lk~~~~~~~-kv~~l~~~~k~lekel~~lk~------~-----------~~~~~~~~~~~ 765 (879)
T COG0013 704 EAALEYLQEQEDLLKEIASLLKVPPELLP-KVERLLEELKELEKELERLKK------K-----------LAAAELADLLS 765 (879)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHH-HHHHHHHHHHHHHHHHHHHHH------H-----------HHHHHHHhhhh
Confidence 57888899999999999999999888887 777777776666666666654 1 12222222222
Q ss_pred HhhHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHccccc
Q psy13761 358 MLKKSEMQITSLQESLAR-KTEENAELTSICDDLISKLSSC 397 (402)
Q Consensus 358 ~LKKeEmkv~SLEesLEQ-KtKENeELTkICDELIsK~~~~ 397 (402)
..+..++ ....--..+ ...++.+|-.++|+|-.+.+..
T Consensus 766 ~~~~~~i--~g~~~~~~~~~~~d~~~Lr~~a~~lk~k~~~~ 804 (879)
T COG0013 766 NAKAEEI--GGVKVLAKEVDGADMKELREIADDLKKKLGSA 804 (879)
T ss_pred cccceee--CCEEEEEEEecCCCHHHHHHHHHHHHhhcCCc
Confidence 2111111 110000000 1156789999999999987764
No 322
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=47.67 E-value=2.4e+02 Score=26.30 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy13761 302 EDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTK 354 (402)
Q Consensus 302 EE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~a 354 (402)
|..|++.+.+-.+.+.+.-. .+|..-++.|-.....|+.-...+++++--
T Consensus 101 ea~L~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~i~~k~~~~~~~~~~ 150 (155)
T PRK06569 101 EQDLKNSINQNIEDINLAAK---QFRTNKSEAIIKLAVNIIEKIAGTKADMNL 150 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHhCccccHHH
Confidence 34444444444443333333 444444555555555555444444444433
No 323
>KOG2391|consensus
Probab=47.67 E-value=3.7e+02 Score=28.50 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=16.2
Q ss_pred HhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhH
Q psy13761 245 CVNQRENDKKQFEKYKKELEKEKEEVQLHLRNS 277 (402)
Q Consensus 245 lIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~ 277 (402)
+++...+..++...-.+++..+++.+...+.+|
T Consensus 233 eq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L 265 (365)
T KOG2391|consen 233 EQESLKRTEEELNIGKQKLVAMKETLEQQLQSL 265 (365)
T ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555544433
No 324
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=47.54 E-value=2.7e+02 Score=26.87 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy13761 227 ENASYQKMLNDYE 239 (402)
Q Consensus 227 ~n~eM~~Im~EYE 239 (402)
....+..-++..+
T Consensus 74 d~~~~~~~l~~a~ 86 (334)
T TIGR00998 74 DPTNAELALAKAE 86 (334)
T ss_pred CchHHHHHHHHHH
Confidence 4444443333333
No 325
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=47.52 E-value=2e+02 Score=25.49 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHccc
Q psy13761 382 ELTSICDDLISKLS 395 (402)
Q Consensus 382 ELTkICDELIsK~~ 395 (402)
.-.++-|+.|.++|
T Consensus 145 ~~~~li~~~i~~~~ 158 (159)
T PRK13461 145 EHRRLIKDFISKVG 158 (159)
T ss_pred HHHHHHHHHHhHcC
Confidence 34778899988876
No 326
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=47.46 E-value=2.8e+02 Score=27.03 Aligned_cols=10 Identities=10% Similarity=-0.051 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy13761 318 KQVNKYDALK 327 (402)
Q Consensus 318 keeQRYqALK 327 (402)
...+++..|+
T Consensus 86 ~~~~~~~~lq 95 (256)
T PF14932_consen 86 LYEQLRNKLQ 95 (256)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 327
>PF15294 Leu_zip: Leucine zipper
Probab=47.42 E-value=3.3e+02 Score=27.80 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-------------hhhh-hhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhh
Q psy13761 226 KENASYQKMLNDYENTITQCVN-------------QREN-DKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERS 291 (402)
Q Consensus 226 ~~n~eM~~Im~EYEktI~qlIe-------------E~eq-~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~ 291 (402)
-+|.++..-|++||++-.-.=. ..+. .......+|.++..|++.+..-|.++|+......+--.++
T Consensus 86 lEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl 165 (278)
T PF15294_consen 86 LENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKL 165 (278)
T ss_pred HHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999999885332211 1111 1233678999999999999999999999988888777777
Q ss_pred HHHHHhhHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 292 KVIIEGMKANEDHLRA--RHSELEEELKKQVNKYDALKTHAISQL 334 (402)
Q Consensus 292 KevIegyKkNEE~LKk--~ieey~~rvkkeeQRYqALKaHAEEKL 334 (402)
...+..++.--...+. ....-...+...++...+||...+..+
T Consensus 166 ~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~ 210 (278)
T PF15294_consen 166 EAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKAL 210 (278)
T ss_pred HHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHH
Confidence 7777776651111111 111223344455666666665544433
No 328
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=47.40 E-value=64 Score=31.70 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHH----------HHHHH
Q psy13761 312 LEEELKKQVNKYDALKTHAISQ------LEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQ----------ESLAR 375 (402)
Q Consensus 312 y~~rvkkeeQRYqALKaHAEEK------Le~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLE----------esLEQ 375 (402)
|.+++..+-.||+-|-....+- -+.-++|-.-+-.-++.-+-+.++.+|-.-. ++.-+ .--.-
T Consensus 6 ~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~~~~~~~~~~y 84 (244)
T smart00101 6 YMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNEDHVASIKEY 84 (244)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCchHHHHHHHHH
Confidence 4556666666665544333221 1344556666666666666666666665322 11110 00111
Q ss_pred HHHHHHHHHHHHHHHHHcccc
Q psy13761 376 KTEENAELTSICDDLISKLSS 396 (402)
Q Consensus 376 KtKENeELTkICDELIsK~~~ 396 (402)
+.+=..||..||+++|.=+..
T Consensus 85 r~kie~EL~~iC~eil~lid~ 105 (244)
T smart00101 85 RGKIETELSKICDGILKLLES 105 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 223367999999999986654
No 329
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=47.27 E-value=89 Score=29.52 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy13761 339 QDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICD 388 (402)
Q Consensus 339 EEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICD 388 (402)
..+..-.+..+.++..|+.+++..+.++.+|...+.....+.+.|..|-|
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 330
>KOG0946|consensus
Probab=47.13 E-value=5.5e+02 Score=30.32 Aligned_cols=40 Identities=25% Similarity=0.294 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q psy13761 216 EKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQ 255 (402)
Q Consensus 216 ~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~ 255 (402)
.+|-.++.+++.+.+|..-.++.+.-+...+++..+-+.+
T Consensus 668 ~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q 707 (970)
T KOG0946|consen 668 ELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQ 707 (970)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666678888888888888888888888887777665555
No 331
>PRK00736 hypothetical protein; Provisional
Probab=46.97 E-value=84 Score=25.19 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q psy13761 350 METTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSS 396 (402)
Q Consensus 350 aE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~~ 396 (402)
+.+..|+.++--.+.-|..|...+-+-.++++.|++-|.-|..++..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666677777777777777777777777777777777777666543
No 332
>PRK09343 prefoldin subunit beta; Provisional
Probab=46.93 E-value=2e+02 Score=25.17 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=21.3
Q ss_pred hHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHH
Q psy13761 281 FNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQ 319 (402)
Q Consensus 281 FSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkke 319 (402)
-.+|=.|-+-+..-|..+.+.++.|++.+.+....+...
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555665566666665555555555443
No 333
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=46.68 E-value=3e+02 Score=27.10 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHH
Q psy13761 349 EMETTKLKAMLKKSEMQITSLQESLARK-TEENAELTSICDDL 390 (402)
Q Consensus 349 eaE~~aLqA~LKKeEmkv~SLEesLEQK-tKENeELTkICDEL 390 (402)
..++.++++.++|.+-.-.+.-+.+... .+=+++++.+||.+
T Consensus 156 ~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~ 198 (269)
T cd07673 156 QREIEKAAVKSKKATESYKLYVEKYALAKADFEQKMTETAQKF 198 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544433222222221 23356778888754
No 334
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=46.65 E-value=2e+02 Score=25.05 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTI 242 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI 242 (402)
.....++++.....+..-+...+.-+
T Consensus 34 ~k~~~~~l~~~~~~~~~~l~~~~~el 59 (158)
T PF03938_consen 34 GKDAQAKLQEKFKALQKELQAKQKEL 59 (158)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333333333
No 335
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.62 E-value=2e+02 Score=27.72 Aligned_cols=85 Identities=16% Similarity=0.245 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHH--------HHH-HHHHH
Q psy13761 312 LEEELKKQVNKYDALKTHAISQL----EKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQ--------ESL-ARKTE 378 (402)
Q Consensus 312 y~~rvkkeeQRYqALKaHAEEKL----e~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLE--------esL-EQKtK 378 (402)
|++++..+-.||+-+-.....-+ +.-.+|..-+-.-++.-+.+.++.+|-...-.+--+ ..+ +-+.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~k 85 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHH
Confidence 56677777777766654443333 445566666666677777777777765432211110 111 22344
Q ss_pred HHHHHHHHHHHHHHcccc
Q psy13761 379 ENAELTSICDDLISKLSS 396 (402)
Q Consensus 379 ENeELTkICDELIsK~~~ 396 (402)
=.+||..||+++|.-++.
T Consensus 86 ie~EL~~~C~eii~lId~ 103 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDK 103 (236)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457999999999987665
No 336
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=46.60 E-value=1.8e+02 Score=24.71 Aligned_cols=25 Identities=8% Similarity=0.247 Sum_probs=14.3
Q ss_pred HHHhHHHhhHHHHHHHHhhHHHHHh
Q psy13761 273 HLRNSEIAFNDVHLKYERSKVIIEG 297 (402)
Q Consensus 273 DLnS~EkSFSDLhrRYEK~KevIeg 297 (402)
+...+.....+|-.+|..++..+..
T Consensus 73 ~~~~i~~~~~~l~~~w~~l~~~~~~ 97 (213)
T cd00176 73 DAEEIQERLEELNQRWEELRELAEE 97 (213)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666655544
No 337
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=46.60 E-value=4.1e+02 Score=28.78 Aligned_cols=34 Identities=26% Similarity=0.245 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcc--cccccC
Q psy13761 367 TSLQESLARKTEENAELTSICDDLISKL--SSCVKL 400 (402)
Q Consensus 367 ~SLEesLEQKtKENeELTkICDELIsK~--~~~~~~ 400 (402)
.+++-.|+...+.-.+|-+.|..-|+|+ |+-|||
T Consensus 470 ~~l~pkL~~l~~~Tr~Lq~~iE~~ISk~y~gR~Vni 505 (507)
T PF05600_consen 470 QELEPKLDALVERTRELQKQIEADISKRYKGRPVNI 505 (507)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeec
Confidence 3344445556666667888899999988 334443
No 338
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=46.44 E-value=3.3e+02 Score=27.54 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=6.6
Q ss_pred ccCccccccC
Q psy13761 101 AELSKEDFQT 110 (402)
Q Consensus 101 ~~~~~e~f~~ 110 (402)
--+|-|.||+
T Consensus 7 r~iSmenFrt 16 (267)
T PF10234_consen 7 RLISMENFRT 16 (267)
T ss_pred CCCcHHHcCC
Confidence 3466777776
No 339
>PRK04406 hypothetical protein; Provisional
Probab=46.26 E-value=1.1e+02 Score=25.21 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy13761 350 METTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKL 394 (402)
Q Consensus 350 aE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~ 394 (402)
+.+..|..++--.+--|.+|.+.+-+-.++++.|++-|..|..++
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555444
No 340
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=46.17 E-value=1.6e+02 Score=29.69 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=42.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccccc
Q psy13761 339 QDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSSC 397 (402)
Q Consensus 339 EEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~~~ 397 (402)
+++-.-....+++.-++|-.|++.+...+.|++.+...--+...|-+=+|+|-.+++.-
T Consensus 152 eeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~ 210 (290)
T COG4026 152 EELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELP 210 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccch
Confidence 33333334456677777888888888888888888877778888888888887776653
No 341
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=46.06 E-value=3.6e+02 Score=27.94 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhh---
Q psy13761 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERS--- 291 (402)
Q Consensus 215 ~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~--- 291 (402)
+.+...++.|+++|..|+.-++-|-.-...+.++....++.+-.--.++..|=+.+ .+.|++|...+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~i----------sN~LlKkl~~l~ke 92 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFI----------SNTLLKKLQQLKKE 92 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 67999999999999999999998888888888887766665432223333332222 34555554443
Q ss_pred HHHH-HhhHhhHHHHHHHHHHHHHHHHHH
Q psy13761 292 KVII-EGMKANEDHLRARHSELEEELKKQ 319 (402)
Q Consensus 292 KevI-egyKkNEE~LKk~ieey~~rvkke 319 (402)
|+.+ ..|-+-||.|-+.+..-...|..+
T Consensus 93 Ke~L~~~~e~EEE~ltn~L~rkl~qLr~E 121 (310)
T PF09755_consen 93 KETLALKYEQEEEFLTNDLSRKLNQLRQE 121 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 466666777766555444444433
No 342
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=45.98 E-value=3.2e+02 Score=27.22 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=26.6
Q ss_pred hhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHH
Q psy13761 247 NQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVI 294 (402)
Q Consensus 247 eE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~Kev 294 (402)
.+.+..++.+-....++.++.+....+|...-+.|...++.=|+.+..
T Consensus 102 ~~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k 149 (252)
T cd07675 102 HDLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQS 149 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555566666666666666666666555554444444
No 343
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=45.85 E-value=2.6e+02 Score=26.31 Aligned_cols=106 Identities=14% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHH-HHhhHHHHH
Q psy13761 218 DKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLK-YERSKVIIE 296 (402)
Q Consensus 218 ~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrR-YEK~KevIe 296 (402)
+..+..|+.+|.+|+..+++|+.++--+| .+=|.|...-+..-...|.+.+.. .+..-.++.
T Consensus 69 n~qi~~Lq~EN~eL~~~leEhq~alelIM-----------------~KyReq~~~l~~~~k~~~~~~~~~~~~~~~~~~~ 131 (181)
T PF05769_consen 69 NRQIRQLQQENRELRQSLEEHQSALELIM-----------------SKYREQMSQLMMASKFDDTEPYLEANEQLSKEVQ 131 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHh
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 297 GMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLR 344 (402)
Q Consensus 297 gyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqv 344 (402)
+. .+..-...+-+...+.-.++.|...+.-- .+|..=|+.+-++
T Consensus 132 ~~---~~kI~EM~~vM~~ai~~de~~~~~~qe~i-~qL~~EN~~LRel 175 (181)
T PF05769_consen 132 SQ---AEKICEMAAVMRKAIELDEENSQEEQEII-AQLETENKGLREL 175 (181)
T ss_pred hH---HHHHHHHHHHHHHHHhcchhhhHhHHHHH-HHHHHHHHHHHHH
No 344
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=45.56 E-value=1.1e+02 Score=25.63 Aligned_cols=31 Identities=16% Similarity=0.068 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy13761 325 ALKTHAISQLEKANQDLDLRNKTYEMETTKL 355 (402)
Q Consensus 325 ALKaHAEEKLe~ANEEIaqvrsk~eaE~~aL 355 (402)
.+.+.++.+|..|..+..++...+..+....
T Consensus 51 ~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~ 81 (132)
T PF00430_consen 51 QLLAEYEEKLAEAREEAQEIIEEAKEEAEKE 81 (132)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433333
No 345
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=45.43 E-value=92 Score=28.66 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTIT 243 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~ 243 (402)
++..++-|+.....++..+.+|..++.
T Consensus 18 l~~qie~L~~~i~~l~~~~~e~~~~~~ 44 (145)
T COG1730 18 LQSQIESLQAQIAALNAAISELQTAIE 44 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 346
>PRK00295 hypothetical protein; Provisional
Probab=45.24 E-value=99 Score=24.78 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy13761 350 METTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLS 395 (402)
Q Consensus 350 aE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~ 395 (402)
+.+..|+.++--.+--|.+|.+.+-+-.++++.|++-|..|..++.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666777776677777777777766665553
No 347
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=45.21 E-value=2.8e+02 Score=26.32 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=20.7
Q ss_pred HHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHcccc
Q psy13761 364 MQITSLQESLARKTEENAE-------LTSICDDLISKLSS 396 (402)
Q Consensus 364 mkv~SLEesLEQKtKENeE-------LTkICDELIsK~~~ 396 (402)
-=+.+|++.|.+-....+. +.-|+|.|++-+++
T Consensus 94 pviDnlerAl~~~~~~~d~~~~l~~Gvem~~~~l~~~L~k 133 (193)
T COG0576 94 PVIDNLERALEAAEDDKDPEKALLEGVEMTLDQLLDALEK 133 (193)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677776664444333 67788888876665
No 348
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=45.18 E-value=91 Score=26.30 Aligned_cols=43 Identities=28% Similarity=0.411 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy13761 333 QLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICD 388 (402)
Q Consensus 333 KLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICD 388 (402)
||++...+|+..+. .++.+|+.||-.+.+. ..-||.|...|+-
T Consensus 2 KleKi~~eieK~k~----Kiae~Q~rlK~Le~qk---------~E~EN~EIv~~VR 44 (83)
T PF14193_consen 2 KLEKIRAEIEKTKE----KIAELQARLKELEAQK---------TEAENLEIVQMVR 44 (83)
T ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 67777888877764 4777888887777664 4567777777764
No 349
>PLN03188 kinesin-12 family protein; Provisional
Probab=45.16 E-value=6.7e+02 Score=30.81 Aligned_cols=127 Identities=20% Similarity=0.199 Sum_probs=0.0
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHH
Q psy13761 208 PERNSTSDEKDKLIEKLKKENASYQKMLNDY-------------ENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHL 274 (402)
Q Consensus 208 ~l~~s~~~~~~~~~e~l~~~n~eM~~Im~EY-------------EktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDL 274 (402)
+++|. |+.-+|-+|-...-.+..=|++- -+.|..|-+|.--.+-+-+++...+.+|+.-++..
T Consensus 1113 ~e~ya---~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~q- 1188 (1320)
T PLN03188 1113 LEQYA---DLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQ- 1188 (1320)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-
Q ss_pred HhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy13761 275 RNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTK 354 (402)
Q Consensus 275 nS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~a 354 (402)
++.+.+..+.==|-|- .+.+.++.+.-.+.|+. -|++.-++|.++|+.++++|+.|+..
T Consensus 1189 ----------------lrdtaeav~aagellv-rl~eaeea~~~a~~r~~----~~eqe~~~~~k~~~klkrkh~~e~~t 1247 (1320)
T PLN03188 1189 ----------------LRDTAEAVQAAGELLV-RLKEAEEALTVAQKRAM----DAEQEAAEAYKQIDKLKRKHENEIST 1247 (1320)
T ss_pred ----------------HhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHh
Q psy13761 355 LKAML 359 (402)
Q Consensus 355 LqA~L 359 (402)
|+-.|
T Consensus 1248 ~~q~~ 1252 (1320)
T PLN03188 1248 LNQLV 1252 (1320)
T ss_pred HHHHH
No 350
>PRK02793 phi X174 lysis protein; Provisional
Probab=45.01 E-value=98 Score=25.06 Aligned_cols=47 Identities=26% Similarity=0.256 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy13761 349 EMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLS 395 (402)
Q Consensus 349 eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~ 395 (402)
++.+..|..++--.+--|.+|.+.|-+-.++++.|++-|.-|..+++
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555666666666655555443
No 351
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=44.90 E-value=3.6e+02 Score=27.56 Aligned_cols=66 Identities=21% Similarity=0.297 Sum_probs=49.1
Q ss_pred HHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 262 ELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHA 330 (402)
Q Consensus 262 kllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHA 330 (402)
.+.=+-|.+.-.|..+|..|+.+.+.|+.-..-++-.|.+-..|+..+.++.+.| .+|=+.+..|.
T Consensus 109 ~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L---~~rdeli~khG 174 (302)
T PF09738_consen 109 ALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL---KQRDELIEKHG 174 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCC
Confidence 3555667777778888888888888886655557888888888888888887777 55666677764
No 352
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=44.82 E-value=3.3e+02 Score=27.15 Aligned_cols=66 Identities=20% Similarity=0.150 Sum_probs=35.4
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 257 EKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALK 327 (402)
Q Consensus 257 ~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALK 327 (402)
...+.-+..+-+.+...|...|.++.+.-.++.-+- ....-..+-..+.++...+...+.++..|.
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d-----~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~ 234 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFD-----PKAQSSAQLSLISTLEGELIRVQAQLAQLR 234 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777777777777777766655543221 111111233345555555555555555554
No 353
>PRK04325 hypothetical protein; Provisional
Probab=44.39 E-value=93 Score=25.32 Aligned_cols=45 Identities=22% Similarity=0.208 Sum_probs=28.4
Q ss_pred HHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy13761 351 ETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLS 395 (402)
Q Consensus 351 E~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~ 395 (402)
.+..|+.++--.+--|..|.+.|-+-.++++.|++-|.-|..++.
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666666666666666666666677766666666553
No 354
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=44.10 E-value=2.8e+02 Score=26.08 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=21.8
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHH
Q psy13761 258 KYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKV 293 (402)
Q Consensus 258 ~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~Ke 293 (402)
..........+.+.+++..++....+|-.+.+..+.
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKK 97 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555566666666666666666666666666544
No 355
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=44.08 E-value=5.9e+02 Score=29.79 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=10.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Q psy13761 361 KSEMQITSLQESLARKTEENAELTS 385 (402)
Q Consensus 361 KeEmkv~SLEesLEQKtKENeELTk 385 (402)
..+-.+.++...+.....+...+..
T Consensus 728 ~~~~~l~~~~~~~~~~~~~~~~~~~ 752 (1047)
T PRK10246 728 SLHSQLQTLQQQDVLEAQRLQKAQA 752 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433333
No 356
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=43.99 E-value=2.8e+02 Score=26.06 Aligned_cols=12 Identities=33% Similarity=0.653 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy13761 221 IEKLKKENASYQ 232 (402)
Q Consensus 221 ~e~l~~~n~eM~ 232 (402)
+..++..+..++
T Consensus 29 l~~~~~~~~~l~ 40 (302)
T PF10186_consen 29 LQQLKEENEELR 40 (302)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 357
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=43.83 E-value=41 Score=27.11 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=28.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 299 KANEDHLRARHSELEEELKKQVNKYDALKTHAI 331 (402)
Q Consensus 299 KkNEE~LKk~ieey~~rvkkeeQRYqALKaHAE 331 (402)
++.=+.||..|.++++++.+.+..-..||.+|.
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344578999999999999999999999998863
No 358
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=43.79 E-value=62 Score=32.97 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhh
Q psy13761 255 QFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERS 291 (402)
Q Consensus 255 ~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~ 291 (402)
+.-.++..++.|||.+..+|+.=.-+.-.||+.|-|+
T Consensus 237 ~vfeeLt~~vQEKDsLaSElhVRHVaIEQLlKn~skl 273 (285)
T PF06937_consen 237 DVFEELTQQVQEKDSLASELHVRHVAIEQLLKNCSKL 273 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3445577789999999999999999999999988775
No 359
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=43.70 E-value=3e+02 Score=26.29 Aligned_cols=146 Identities=13% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhh-------------HHHHHHHHhhHHHHHhhHhhHHHHH
Q psy13761 240 NTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAF-------------NDVHLKYERSKVIIEGMKANEDHLR 306 (402)
Q Consensus 240 ktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSF-------------SDLhrRYEK~KevIegyKkNEE~LK 306 (402)
..|..++.+...-.......+..+...-|.-...-+.+-.-| +.+.....++++.+..-+.....++
T Consensus 25 ~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~~ 104 (296)
T PF13949_consen 25 EKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQLR 104 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy13761 307 ARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSI 386 (402)
Q Consensus 307 k~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkI 386 (402)
..+......|..+..-...|.+ .|-.++..-..-....-..+..|-..|.....+...+...|.++. .++-++++
T Consensus 105 ~~~~~~~~~l~~L~~~~~~L~~----~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~~-~~d~i~~~ 179 (296)
T PF13949_consen 105 SKLESIEENLELLSGPIEELEA----SLPSSSPSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLKEKL-QNDDISKL 179 (296)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHH----HS--B---SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHcCChhhHHh----hCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHH
Q ss_pred HHHH
Q psy13761 387 CDDL 390 (402)
Q Consensus 387 CDEL 390 (402)
...+
T Consensus 180 l~~~ 183 (296)
T PF13949_consen 180 LSEL 183 (296)
T ss_dssp HHHH
T ss_pred HHHh
No 360
>PRK12704 phosphodiesterase; Provisional
Probab=43.70 E-value=4.6e+02 Score=28.47 Aligned_cols=106 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH
Q psy13761 286 LKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQ 365 (402)
Q Consensus 286 rRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmk 365 (402)
+..+..+.-.+.+. ++...+.-+.......+.++.+...+.-++..+.....++.+..+........|.-.....+-+
T Consensus 31 ~~l~~Ae~eAe~I~--keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekk 108 (520)
T PRK12704 31 AKIKEAEEEAKRIL--EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108 (520)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHH---HHHHHHHHHHHHHHHHHHHHHHc
Q psy13761 366 ITSLQ---ESLARKTEENAELTSICDDLISK 393 (402)
Q Consensus 366 v~SLE---esLEQKtKENeELTkICDELIsK 393 (402)
-..|+ ..|+++.++.+++.+-+++++.+
T Consensus 109 e~eL~~re~~Le~re~eLe~~~~~~~~~~~~ 139 (520)
T PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEE 139 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 361
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=43.69 E-value=3.7e+02 Score=27.35 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHH
Q psy13761 227 ENASYQKMLNDYENTITQCVNQREND--KKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDH 304 (402)
Q Consensus 227 ~n~eM~~Im~EYEktI~qlIeE~eq~--k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~ 304 (402)
++..|+. -|-.+|..+|.+.+.. +..+.. -+.+.+....||.++----.=|+.+.+...+..+.|.. -++
T Consensus 119 kS~~~RS---~yLe~Lc~IIqeLq~t~~~~LS~~----dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~-~~~ 190 (269)
T PF05278_consen 119 KSQQFRS---YYLECLCDIIQELQSTPLKELSES----DLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQ-HET 190 (269)
T ss_pred CcHHHHH---HHHHHHHHHHHHHhcCcHhhhhHH----HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4555553 5777888888887642 222222 34555666667776666666666666665554443321 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHH
Q psy13761 305 LRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQES 372 (402)
Q Consensus 305 LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEes 372 (402)
.....+.....+.........+ .++|..+-+++..++.. +.+.++.|...+++..-|...
T Consensus 191 ~e~eke~~~r~l~~~~~ELe~~----~EeL~~~Eke~~e~~~~----i~e~~~rl~~l~~~~~~l~k~ 250 (269)
T PF05278_consen 191 REEEKEEKDRKLELKKEELEEL----EEELKQKEKEVKEIKER----ITEMKGRLGELEMESTRLSKT 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222222221 33444444444444333 455666666666665555443
No 362
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.38 E-value=4.3e+02 Score=28.07 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhHHHHHHH----HHHHhHHHHHHHHHHhHHHhhHHHHHHHHhh
Q psy13761 217 KDKLIEKLKKENASYQK-MLNDYENTITQCVNQRENDKKQFEKYK----KELEKEKEEVQLHLRNSEIAFNDVHLKYERS 291 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~-Im~EYEktI~qlIeE~eq~k~~~~~ei----qkllkERDQa~aDLnS~EkSFSDLhrRYEK~ 291 (402)
++..+..|+.++..|+. +..+|.-....+-+|+-+... +++++ +--+.|--.+..+|++||.-- -|+-|||.
T Consensus 224 ik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~er-LEeqlNd~~elHq~Ei~~LKqeLa~~EEK~--~Yqs~eRa 300 (395)
T PF10267_consen 224 IKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYER-LEEQLNDLTELHQNEIYNLKQELASMEEKM--AYQSYERA 300 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHH
Confidence 33334444445555554 444553333333333322222 23333 334556667778888887654 36778888
Q ss_pred HHHHH
Q psy13761 292 KVIIE 296 (402)
Q Consensus 292 KevIe 296 (402)
|++-+
T Consensus 301 Rdi~E 305 (395)
T PF10267_consen 301 RDIWE 305 (395)
T ss_pred hHHHH
Confidence 87643
No 363
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=43.32 E-value=3.3e+02 Score=26.68 Aligned_cols=26 Identities=8% Similarity=0.028 Sum_probs=17.7
Q ss_pred HHHhHHHhhHHHHHHHHhhHHHHHhh
Q psy13761 273 HLRNSEIAFNDVHLKYERSKVIIEGM 298 (402)
Q Consensus 273 DLnS~EkSFSDLhrRYEK~KevIegy 298 (402)
+=+++.++|++|-.-+||++.+-...
T Consensus 74 e~t~L~kals~lae~~Ek~~~l~~r~ 99 (218)
T cd07663 74 EPTVIKKYLLKVAELFEKLRKVEDRV 99 (218)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33367888888888888887754433
No 364
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=43.29 E-value=3.5e+02 Score=26.99 Aligned_cols=35 Identities=17% Similarity=0.057 Sum_probs=14.9
Q ss_pred HHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHH
Q psy13761 259 YKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKV 293 (402)
Q Consensus 259 eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~Ke 293 (402)
.+..+..+..++...|..+-..|.+=|-.+-.++.
T Consensus 215 ~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~ 249 (362)
T TIGR01010 215 LISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQA 249 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHH
Confidence 34444444444444444444433333333333333
No 365
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=43.20 E-value=1.9e+02 Score=24.16 Aligned_cols=42 Identities=40% Similarity=0.380 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHH
Q psy13761 335 EKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARK 376 (402)
Q Consensus 335 e~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQK 376 (402)
+.|.+-+++-....+.++..++..+++.+-++..+...++++
T Consensus 86 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 86 EEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444444444444444444444443
No 366
>PF14992 TMCO5: TMCO5 family
Probab=43.06 E-value=3.8e+02 Score=27.38 Aligned_cols=145 Identities=14% Similarity=0.153 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH--HHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhh--
Q psy13761 216 EKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQF--EKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERS-- 291 (402)
Q Consensus 216 ~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~--~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~-- 291 (402)
|++..-.++...|+.+-.=|.+=|++|..+..|.-+-...+ .++...+..+++.+..+|. .|+ +-|=+.-+-.
T Consensus 8 dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le-~e~--~~LE~~ne~l~~ 84 (280)
T PF14992_consen 8 DLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELE-LET--AKLEKENEHLSK 84 (280)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHH-hhh--HHHhhhhHhhhh
Confidence 45566667777888888778888888877665544422221 1333444455555554444 333 2221111111
Q ss_pred ------HHHH---HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Q psy13761 292 ------KVII---EGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKS 362 (402)
Q Consensus 292 ------KevI---egyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKe 362 (402)
+++- -+.+-....++..++....++++...-+..++.+.. ++..=-.++.++-..+..++..|+-.|+|.
T Consensus 85 ~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~-kve~d~~~v~~l~eDq~~~i~klkE~L~rm 163 (280)
T PF14992_consen 85 SVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIA-KVEDDYQQVHQLCEDQANEIKKLKEKLRRM 163 (280)
T ss_pred hhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 112224455677777777777777766665543332 222223345555677777788888877665
Q ss_pred HH
Q psy13761 363 EM 364 (402)
Q Consensus 363 Em 364 (402)
+-
T Consensus 164 E~ 165 (280)
T PF14992_consen 164 EE 165 (280)
T ss_pred HH
Confidence 54
No 367
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=43.01 E-value=1.4e+02 Score=22.41 Aligned_cols=48 Identities=27% Similarity=0.340 Sum_probs=26.3
Q ss_pred HHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 288 YERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDL 343 (402)
Q Consensus 288 YEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaq 343 (402)
+.++.+++..+...+-+|...+..|.+-+ .|-.++.+.|+.|-.+|..
T Consensus 5 ~~~Le~Iv~~Le~~~~sLdes~~lyeeg~--------~l~~~c~~~L~~~e~~i~~ 52 (53)
T PF02609_consen 5 MERLEEIVEKLESGELSLDESLKLYEEGM--------ELIKKCQERLEEAEQKIEE 52 (53)
T ss_dssp HHHHHHHHHHHHTT-S-HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhh
Confidence 44555666666666666666666555443 3445555666666555543
No 368
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=42.97 E-value=2.2e+02 Score=24.53 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy13761 348 YEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSIC 387 (402)
Q Consensus 348 ~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkIC 387 (402)
.+..+..|+..++...-.+.+|...|+--..|-.+|.++.
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444444444444445555555555555555543
No 369
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=42.84 E-value=3.4e+02 Score=26.71 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q psy13761 370 QESLARKTEENAEL 383 (402)
Q Consensus 370 EesLEQKtKENeEL 383 (402)
+...+...+|+..|
T Consensus 283 ~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 283 QEEAEKLQKEIQDL 296 (297)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 33344444444433
No 370
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=42.81 E-value=2.3e+02 Score=24.67 Aligned_cols=28 Identities=11% Similarity=0.239 Sum_probs=14.9
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhhHHHH
Q psy13761 258 KYKKELEKEKEEVQLHLRNSEIAFNDVH 285 (402)
Q Consensus 258 ~eiqkllkERDQa~aDLnS~EkSFSDLh 285 (402)
.+++.+.....++..+++.+..+...|-
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~ 33 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQ 33 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555543
No 371
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=42.79 E-value=4e+02 Score=27.56 Aligned_cols=83 Identities=22% Similarity=0.264 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHH
Q psy13761 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCV----------NQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDV 284 (402)
Q Consensus 215 ~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlI----------eE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDL 284 (402)
.+|....++|++++.+-.--|+--|.++..-= +-..++.+..-..+..+.+-|+-+.+||..-|..++=|
T Consensus 21 qelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~l 100 (307)
T PF10481_consen 21 QELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFL 100 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHH
Confidence 36777788888888887777777776654311 11122223345567778888888889988888888888
Q ss_pred HHHHHhhHHHHHh
Q psy13761 285 HLKYERSKVIIEG 297 (402)
Q Consensus 285 hrRYEK~KevIeg 297 (402)
--.+..+|.-|+.
T Consensus 101 EgQl~s~Kkqie~ 113 (307)
T PF10481_consen 101 EGQLNSCKKQIEK 113 (307)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777776655
No 372
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=42.73 E-value=2.5e+02 Score=25.07 Aligned_cols=52 Identities=8% Similarity=0.026 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHH----HHHHHHHhHHHhhHHHHHHH
Q psy13761 222 EKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKE----EVQLHLRNSEIAFNDVHLKY 288 (402)
Q Consensus 222 e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERD----Qa~aDLnS~EkSFSDLhrRY 288 (402)
..|+..+.++...|..|+. ++.+|..++.||. ++++-|.-++.+|.+=|...
T Consensus 12 ~DL~~rYs~L~s~lkKfkq---------------~q~~I~q~L~eRA~~d~kaRE~l~rLd~aFP~G~~~~ 67 (107)
T PRK15365 12 RDLEQSYMQLNHCLKKFHQ---------------IRAKVSQQLAERAESPKKSRETESILHNLFPQGVAGV 67 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCcchhhHH
Confidence 3445555555555555543 2344444555553 57777888899998776433
No 373
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=42.60 E-value=71 Score=32.83 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=19.2
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy13761 359 LKKSEMQITSLQESLARKTEENAELTSICDDLISKL 394 (402)
Q Consensus 359 LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~ 394 (402)
+...+-++..++..+..+.+++..|..=||||=+..
T Consensus 153 is~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 153 ISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333334444444455555566666666677665543
No 374
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=42.15 E-value=2.8e+02 Score=26.33 Aligned_cols=56 Identities=21% Similarity=0.324 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHH
Q psy13761 229 ASYQKMLNDYENTITQCVNQREN---DKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDV 284 (402)
Q Consensus 229 ~eM~~Im~EYEktI~qlIeE~eq---~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDL 284 (402)
.++...|.+.|..|-++=...+. .++....+|.++..+-+++..++.++|-.|.++
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444333211 122233445555555555555555555555443
No 375
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=42.00 E-value=3e+02 Score=28.14 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=7.4
Q ss_pred HHhhhhhhhhhccCCCC
Q psy13761 56 KELAEDTKEVVNLSGHS 72 (402)
Q Consensus 56 ~~~~~~~~~~~~~~~~~ 72 (402)
.||.++.....+-.+.+
T Consensus 104 ~EL~eEl~~~~~~~~~~ 120 (388)
T PF04912_consen 104 EELKEELEKRKADSKES 120 (388)
T ss_pred HHHHHHHHHHhhccccc
Confidence 34444444443334444
No 376
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=41.98 E-value=8.5 Score=42.15 Aligned_cols=103 Identities=15% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhHHH---HHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHH
Q psy13761 216 EKDKLIEKLKKENASYQKMLNDYENTITQCVNQ---RENDKKQF---EKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYE 289 (402)
Q Consensus 216 ~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE---~eq~k~~~---~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYE 289 (402)
+++++++.++.++.++....++|+-.+..+-.+ ..+....+ ..+.+.+..|-|.+++....+++-=+.+ .+|.
T Consensus 243 ~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~v-e~YK 321 (713)
T PF05622_consen 243 DLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEV-EKYK 321 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHH
Confidence 467777777777777777777776555544333 22222222 2344555666666665544433322222 2232
Q ss_pred hhHHHHHhhHhhHHHHHHHHHHHHHHHHHH
Q psy13761 290 RSKVIIEGMKANEDHLRARHSELEEELKKQ 319 (402)
Q Consensus 290 K~KevIegyKkNEE~LKk~ieey~~rvkke 319 (402)
+-=+-+..||+-=+.|+.....|+++....
T Consensus 322 kKLed~~~lk~qvk~Lee~N~~l~e~~~~L 351 (713)
T PF05622_consen 322 KKLEDLEDLKRQVKELEEDNAVLLETKAML 351 (713)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223444444444555555555544433
No 377
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=41.94 E-value=2.5e+02 Score=24.93 Aligned_cols=25 Identities=12% Similarity=0.395 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHH
Q psy13761 231 YQKMLNDYENTITQCVNQRENDKKQ 255 (402)
Q Consensus 231 M~~Im~EYEktI~qlIeE~eq~k~~ 255 (402)
+.++|++-...|...+.+.+..+..
T Consensus 30 i~~~l~~R~~~I~~~l~~A~~~~~e 54 (159)
T PRK13461 30 IKAVIDSRQSEIDNKIEKADEDQKK 54 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666665444444
No 378
>KOG4470|consensus
Probab=41.85 E-value=2.2e+02 Score=28.56 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhhhhhhhHH-----HHHHHHHHHhHHHH
Q psy13761 235 LNDYENTITQCVNQRENDKKQ-----FEKYKKELEKEKEE 269 (402)
Q Consensus 235 m~EYEktI~qlIeE~eq~k~~-----~~~eiqkllkERDQ 269 (402)
++.|--+|+.-+.+..+.-.. +=..+.++..|+|.
T Consensus 164 ~eaF~tqISrYf~~RgklV~K~aK~pHV~DYR~~v~e~DE 203 (246)
T KOG4470|consen 164 VEAFQTQISRYFSERGKLVTKAAKYPHVDDYRRLVHELDE 203 (246)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCccHHHHHHHHhcccH
Confidence 666777777766665442211 22344555555554
No 379
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=41.66 E-value=4.9e+02 Score=28.23 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=37.2
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHH
Q psy13761 257 EKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHS 310 (402)
Q Consensus 257 ~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ie 310 (402)
...+..+...-+.+..++..+...+.+|...=++.+.-|..++.....+|+.+-
T Consensus 100 ~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll 153 (560)
T PF06160_consen 100 KQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELL 153 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666667777777777777777777777777777776666666665543
No 380
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=41.65 E-value=3e+02 Score=25.82 Aligned_cols=54 Identities=15% Similarity=0.171 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy13761 329 HAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSI 386 (402)
Q Consensus 329 HAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkI 386 (402)
+|...|.++...++++...-. ....++...+..|..++...++-.++-++.+..
T Consensus 119 ~~~~~L~k~~~~~~Kl~~~~~----s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~ 172 (216)
T cd07627 119 SAESELSKKKAQLEKLKRQGK----TQQEKLNSLLSELEEAERRASELKKEFEEVSEL 172 (216)
T ss_pred HHHHHHHHHHHHHHHHhccCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555543210 012344444444444555444444444444433
No 381
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=41.25 E-value=2.8e+02 Score=25.29 Aligned_cols=79 Identities=9% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhHHHHHHH
Q psy13761 284 VHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQ--------LEKANQDLDLRNKTYEMETTKL 355 (402)
Q Consensus 284 LhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEK--------Le~ANEEIaqvrsk~eaE~~aL 355 (402)
|-.|-++..+-+..-.++.+......++|.+.+..-.+..+.+.+.|... ++.|+.+.+++...+...+..-
T Consensus 51 l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~E 130 (167)
T PRK08475 51 YKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFE 130 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHH
Q psy13761 356 KAMLKKS 362 (402)
Q Consensus 356 qA~LKKe 362 (402)
+......
T Consensus 131 k~~a~~e 137 (167)
T PRK08475 131 VRKMERE 137 (167)
T ss_pred HHHHHHH
No 382
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.93 E-value=2.7e+02 Score=25.03 Aligned_cols=62 Identities=24% Similarity=0.325 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHH
Q psy13761 216 EKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEI 279 (402)
Q Consensus 216 ~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~Ek 279 (402)
+|+..+.+|+.++.++..-+...+..++.+.... ...+....+..+..+..++.+.|..+..
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~--t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEP--TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777778888777777777777766666655432 1222445555555665555555554443
No 383
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=40.92 E-value=2e+02 Score=23.41 Aligned_cols=61 Identities=26% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHH----------HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHh
Q psy13761 230 SYQKMLNDYENTITQCVNQRENDKKQ----------FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYER 290 (402)
Q Consensus 230 eM~~Im~EYEktI~qlIeE~eq~k~~----------~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK 290 (402)
.|...|.+=+..|+++++|-++-... +.+.+.......+.+...++.+++...+|-.|+..
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 384
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=40.90 E-value=1.4e+02 Score=24.52 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=36.6
Q ss_pred HHHhHHHhhHHHHHHHHhhHHHHHh---hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 273 HLRNSEIAFNDVHLKYERSKVIIEG---MKANEDHLRARHSELEEELKKQVNKYDALKT 328 (402)
Q Consensus 273 DLnS~EkSFSDLhrRYEK~KevIeg---yKkNEE~LKk~ieey~~rvkkeeQRYqALKa 328 (402)
+.+.++.+-+.|=.|+.++|.+|.+ +...-+.-...|+.+.+++....+....++.
T Consensus 22 ~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 22 SSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888899999999887 4555555555555555555555554444443
No 385
>KOG4360|consensus
Probab=40.80 E-value=5.7e+02 Score=28.68 Aligned_cols=110 Identities=14% Similarity=0.123 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhhhhhh----hhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHH
Q psy13761 234 MLNDYENTITQCVNQREN----DKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARH 309 (402)
Q Consensus 234 Im~EYEktI~qlIeE~eq----~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~i 309 (402)
+..++|...+.+.....+ +....+++++...+|..+..++..++.....|+-++-.-++--.+.+..-=-..+..-
T Consensus 191 ~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~ 270 (596)
T KOG4360|consen 191 TYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQ 270 (596)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 566677766655543333 2233477889999999999999999999999986543322221122111112233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13761 310 SELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKT 347 (402)
Q Consensus 310 eey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk 347 (402)
.++.+.+++++.||. .-++.+..|.+||..+|+.
T Consensus 271 ~ql~aE~~EleDkyA----E~m~~~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 271 RQLTAELEELEDKYA----ECMQMLHEAEEELKCLRSC 304 (596)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhccC
Confidence 445555666666664 3345566677777666653
No 386
>smart00338 BRLZ basic region leucin zipper.
Probab=40.72 E-value=1.6e+02 Score=22.59 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 348 YEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDL 390 (402)
Q Consensus 348 ~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDEL 390 (402)
.....+|-+...||. ..+..|+..+...+.+|.+|..-++.|
T Consensus 11 ~rNR~aA~~~R~rKk-~~~~~Le~~~~~L~~en~~L~~~~~~l 52 (65)
T smart00338 11 ERNREAARRSRERKK-AEIEELERKVEQLEAENERLKKEIERL 52 (65)
T ss_pred HHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444443332 244555555555555555555544444
No 387
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=40.65 E-value=4.2e+02 Score=27.15 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q psy13761 229 ASYQKMLNDYEN 240 (402)
Q Consensus 229 ~eM~~Im~EYEk 240 (402)
..|+.++.+++.
T Consensus 268 ~rl~~L~~~~~~ 279 (388)
T PF04912_consen 268 RRLKSLLSELEE 279 (388)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 388
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=40.47 E-value=2.7e+02 Score=24.88 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHH
Q psy13761 231 YQKMLNDYENTITQCVNQRENDKKQ 255 (402)
Q Consensus 231 M~~Im~EYEktI~qlIeE~eq~k~~ 255 (402)
+..+|++-+..|...+.+.++.+++
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~e 71 (156)
T CHL00118 47 LLKVLDERKEYIRKNLTKASEILAK 71 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666665554444
No 389
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=40.27 E-value=2.4e+02 Score=24.26 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHh-hHHHHHHhhHHHHHHHHHHHHHHHH
Q psy13761 337 ANQDLDLRNKTYEMETTKLKAML-KKSEMQITSLQESLARKTEENAELT 384 (402)
Q Consensus 337 ANEEIaqvrsk~eaE~~aLqA~L-KKeEmkv~SLEesLEQKtKENeELT 384 (402)
|.+=.++..++|+.-+.+|+.+- .|-+-++..|+.++...+.||+.|.
T Consensus 21 A~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~ 69 (87)
T PF12709_consen 21 ARELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLK 69 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556778888888888887211 1233344444444444444444443
No 390
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=40.07 E-value=4.1e+02 Score=26.82 Aligned_cols=94 Identities=22% Similarity=0.282 Sum_probs=42.1
Q ss_pred HhhHHHHHHHHhhHHHHH----hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHhhH-
Q psy13761 279 IAFNDVHLKYERSKVIIE----GMKANEDHLRARHSELEEELKKQVNKYDALKTH---AISQLEKANQD-LDLRNKTYE- 349 (402)
Q Consensus 279 kSFSDLhrRYEK~KevIe----gyKkNEE~LKk~ieey~~rvkkeeQRYqALKaH---AEEKLe~ANEE-Iaqvrsk~e- 349 (402)
.....+|.||+.+.+-|. .+...+..|.+-+..+..-+..-..-|..|..+ ++.+++.+..+ +.......+
T Consensus 84 ~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~ 163 (333)
T PF05816_consen 84 NSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEG 163 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhcccc
Confidence 334444445554444332 223333334444444444444444444444322 34444445444 233333333
Q ss_pred -----HHHHHHHHHhhHHHHHHhhHHHH
Q psy13761 350 -----METTKLKAMLKKSEMQITSLQES 372 (402)
Q Consensus 350 -----aE~~aLqA~LKKeEmkv~SLEes 372 (402)
.+...++..+-+.+.+++-|+-+
T Consensus 164 d~~~~q~~~~~~~~l~~leqRi~DL~~~ 191 (333)
T PF05816_consen 164 DQMDAQELADLEQALFRLEQRIQDLQLS 191 (333)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666665543
No 391
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=40.01 E-value=1.4e+02 Score=29.69 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=11.1
Q ss_pred cccccchhhhhhcccccccCccCCC
Q psy13761 114 CKAPISESELRKQSLYVQFDPFLKS 138 (402)
Q Consensus 114 ~~ssfkESalRKQsLYlkFDplLks 138 (402)
||+.++-..-.-.+|| ++||-=+.
T Consensus 36 It~LIrD~~~~E~~Lf-~~~~~~~~ 59 (259)
T PF08657_consen 36 ITSLIRDTEPHERALF-KVDPPPKS 59 (259)
T ss_pred hHHHhcCCCHhhhhcc-ccCCCCCC
Confidence 4555544444444444 45544333
No 392
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=39.84 E-value=1.2e+02 Score=28.56 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=13.8
Q ss_pred HHHHhhHHHHHHhh-------HHHHHHHHHHHHHHH
Q psy13761 355 LKAMLKKSEMQITS-------LQESLARKTEENAEL 383 (402)
Q Consensus 355 LqA~LKKeEmkv~S-------LEesLEQKtKENeEL 383 (402)
+-..|.-++.+..+ |-++|+|..+.|+-|
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L 100 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQARKANEAL 100 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444 445555555555443
No 393
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=39.81 E-value=2.9e+02 Score=25.03 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q psy13761 231 YQKMLNDYENTITQCVNQRENDKKQFEK 258 (402)
Q Consensus 231 M~~Im~EYEktI~qlIeE~eq~k~~~~~ 258 (402)
+..+|++-...|..-+.+.+..+...+.
T Consensus 44 I~~~l~~R~~~I~~~l~~A~~~~~ea~~ 71 (174)
T PRK07352 44 LGKILEERREAILQALKEAEERLRQAAQ 71 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777766555555433
No 394
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=39.68 E-value=4.8e+02 Score=27.57 Aligned_cols=23 Identities=9% Similarity=0.273 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhh
Q psy13761 231 YQKMLNDYENTITQCVNQRENDK 253 (402)
Q Consensus 231 M~~Im~EYEktI~qlIeE~eq~k 253 (402)
+..+|++-+..|.+.+++.++.+
T Consensus 26 i~~~l~~R~~~I~~~L~eAe~a~ 48 (445)
T PRK13428 26 VRRLMAARQDTVRQQLAESATAA 48 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777776655433
No 395
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=39.57 E-value=1.7e+02 Score=30.23 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=16.2
Q ss_pred ccccchhhhhhcccccccCccCCCCC
Q psy13761 115 KAPISESELRKQSLYVQFDPFLKSPV 140 (402)
Q Consensus 115 ~ssfkESalRKQsLYlkFDplLksp~ 140 (402)
....++-|=++.-++|+|||.+-.+.
T Consensus 85 ~~~Lk~~akk~~a~~lridP~~~~~~ 110 (406)
T PF02388_consen 85 LEELKKYAKKKRALFLRIDPNVIYQE 110 (406)
T ss_dssp HHHHHHHHCTTTEEEEEE--S-EEEC
T ss_pred HHHHHHHHHHCCEEEEEEeCchhhhh
Confidence 44556666566889999999887543
No 396
>PRK02119 hypothetical protein; Provisional
Probab=39.56 E-value=1.4e+02 Score=24.30 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy13761 350 METTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKL 394 (402)
Q Consensus 350 aE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~ 394 (402)
+.+..|..++--.+--|..|.+.|-+-.++++.|++-|.-|..++
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555554444
No 397
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=39.38 E-value=5.3e+02 Score=27.96 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH
Q psy13761 286 LKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQ 365 (402)
Q Consensus 286 rRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmk 365 (402)
+..+..+.-.+.++ ++..++.-+....-..+.++.+...+.-++..+.....++.+.... +..-...|.+.+-.
T Consensus 25 ~~l~~Ae~eAe~i~--keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~r----L~qRee~Lekr~e~ 98 (514)
T TIGR03319 25 KKLGSAEELAKRII--EEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERR----LLQREETLDRKMES 98 (514)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy13761 366 ITSLQESLARKTEENAELTSICDDLISKLS 395 (402)
Q Consensus 366 v~SLEesLEQKtKENeELTkICDELIsK~~ 395 (402)
+...+..|+++.++.++..+-+++++.+..
T Consensus 99 Lekre~~Le~ke~~L~~re~eLee~~~e~~ 128 (514)
T TIGR03319 99 LDKKEENLEKKEKELSNKEKNLDEKEEELE 128 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 398
>PLN02320 seryl-tRNA synthetase
Probab=39.34 E-value=4.5e+02 Score=28.80 Aligned_cols=34 Identities=24% Similarity=0.163 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHH
Q psy13761 350 METTKLKAMLKKSEMQITSLQESLARKTEENAEL 383 (402)
Q Consensus 350 aE~~aLqA~LKKeEmkv~SLEesLEQKtKENeEL 383 (402)
.+..+|.+..+..--++..|+.++.+...+..++
T Consensus 130 ~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 130 SERQALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777766667777766666655554443
No 399
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=39.22 E-value=3.4e+02 Score=25.70 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHH
Q psy13761 231 YQKMLNDYENTITQCVNQRENDKKQF 256 (402)
Q Consensus 231 M~~Im~EYEktI~qlIeE~eq~k~~~ 256 (402)
++++|++-...|...+.+.+..++++
T Consensus 73 i~~~L~~R~~~I~~~L~~Ae~~~~eA 98 (205)
T PRK06231 73 TQRFLNKRKELIEAEINQANELKQQA 98 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666555444443
No 400
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=39.19 E-value=3.6e+02 Score=25.99 Aligned_cols=7 Identities=14% Similarity=0.202 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy13761 218 DKLIEKL 224 (402)
Q Consensus 218 ~~~~e~l 224 (402)
+..++..
T Consensus 79 ~~~l~~a 85 (334)
T TIGR00998 79 ELALAKA 85 (334)
T ss_pred HHHHHHH
Confidence 3333333
No 401
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=38.80 E-value=2.6e+02 Score=24.24 Aligned_cols=27 Identities=19% Similarity=0.259 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHH
Q psy13761 231 YQKMLNDYENTITQCVNQRENDKKQFE 257 (402)
Q Consensus 231 M~~Im~EYEktI~qlIeE~eq~k~~~~ 257 (402)
++.+|++-...|...+.+.+..+..+.
T Consensus 20 i~~~l~~R~~~I~~~l~~A~~~~~ea~ 46 (147)
T TIGR01144 20 LAKAIETRQKKIADGLASAERAKKEAA 46 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666667777776666555554443
No 402
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=38.71 E-value=3.1e+02 Score=25.09 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=30.3
Q ss_pred HhhHHHHHHHHhhHHHHHhhHhhHHH-HHHHHHHHHHHHHH----HHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Q psy13761 279 IAFNDVHLKYERSKVIIEGMKANEDH-LRARHSELEEELKK----QVNKYDALKT--HAISQLEKANQDLDLRNKT 347 (402)
Q Consensus 279 kSFSDLhrRYEK~KevIegyKkNEE~-LKk~ieey~~rvkk----eeQRYqALKa--HAEEKLe~ANEEIaqvrsk 347 (402)
.+|+.|..-+++++.+.+..-.++.. |-..+.+|..-+.- ..+|..++.. .|...|+++...++++...
T Consensus 82 ~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~ 157 (236)
T PF09325_consen 82 EALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKAS 157 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34444555555566655555444332 33334444332221 2444333322 3444455555555544444
No 403
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=38.04 E-value=4.6e+02 Score=26.89 Aligned_cols=122 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH---
Q psy13761 268 EEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALK-THAISQLEKANQDLDL--- 343 (402)
Q Consensus 268 DQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALK-aHAEEKLe~ANEEIaq--- 343 (402)
+|+..+-...=.+..++-.++..|-.+ .++.|...+...|.+....|...+.++..|+ .+..-+...++..+..
T Consensus 44 EQAr~~A~~fA~~ld~~~~kl~~Ms~~--ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~ 121 (301)
T PF06120_consen 44 EQARQEAIEFADSLDELKEKLKEMSST--QLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGY 121 (301)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchH
Q ss_pred -HH-----HhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 344 -RN-----KTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLI 391 (402)
Q Consensus 344 -vr-----sk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELI 391 (402)
+. ......++.+...|-+.+-++......+....+-...++.---+||
T Consensus 122 ~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~i 175 (301)
T PF06120_consen 122 IINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQRIDLI 175 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 404
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=37.90 E-value=1.1e+02 Score=23.48 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=13.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 362 SEMQITSLQESLARKTEENAELTSICDDLI 391 (402)
Q Consensus 362 eEmkv~SLEesLEQKtKENeELTkICDELI 391 (402)
.+.++..|+....+...++..|...|+.|-
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 405
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=37.79 E-value=4.9e+02 Score=27.05 Aligned_cols=39 Identities=28% Similarity=0.301 Sum_probs=25.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHH-hhHHHHHHHHhhHHH
Q psy13761 256 FEKYKKELEKEKEEVQLHLRNSEI-AFNDVHLKYERSKVI 294 (402)
Q Consensus 256 ~~~eiqkllkERDQa~aDLnS~Ek-SFSDLhrRYEK~Kev 294 (402)
+-+.|+.+.+|++.+..++..=|- --.+|-+|..+++..
T Consensus 82 LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~E 121 (310)
T PF09755_consen 82 LLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQE 121 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888888766544332 346777777776653
No 406
>KOG0977|consensus
Probab=37.75 E-value=6.1e+02 Score=28.22 Aligned_cols=156 Identities=19% Similarity=0.242 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-------HHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHH
Q psy13761 223 KLKKENASYQKMLNDYENTITQCVNQRENDKKQFE-------KYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVII 295 (402)
Q Consensus 223 ~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~-------~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevI 295 (402)
.|..+|..|..=+..++.++..=. -..+..++ .-+....++|..+..++..+.-.+.+|-.+|++.-...
T Consensus 60 ~LEaqN~~L~~di~~lr~~~~~~t---s~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~ 136 (546)
T KOG0977|consen 60 FLEAQNRKLEHDINLLRGVVGRET---SGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKER 136 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCC---cchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344577777766666666554321 12222233 33455556677777777777777788888888776666
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHH
Q psy13761 296 EGMKANEDHLRARHSELEEELKKQVNKYDALK---THAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQES 372 (402)
Q Consensus 296 egyKkNEE~LKk~ieey~~rvkkeeQRYqALK---aHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEes 372 (402)
.+.+.+=..+-..+.+.++.+....-|+..|- .+...+..+.-.+|..+++.-.+|++.- ...+.++++|-+.
T Consensus 137 ~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr----~d~~n~~q~Llee 212 (546)
T KOG0977|consen 137 RGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR----VDLQNRVQTLLEE 212 (546)
T ss_pred hhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHH
Confidence 66555544444444444444444444444432 2333333444444555555555554332 3456677777777
Q ss_pred HHHHH----HHHHHHHH
Q psy13761 373 LARKT----EENAELTS 385 (402)
Q Consensus 373 LEQKt----KENeELTk 385 (402)
|+-+. +|+.|+-+
T Consensus 213 l~f~~~~h~~eI~e~~~ 229 (546)
T KOG0977|consen 213 LAFLKRIHKQEIEEERR 229 (546)
T ss_pred HHHHHhccHHHHHHHHH
Confidence 77666 55555544
No 407
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=37.41 E-value=4.9e+02 Score=26.96 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 220 LIEKLKKENASYQKMLNDYENTITQC 245 (402)
Q Consensus 220 ~~e~l~~~n~eM~~Im~EYEktI~ql 245 (402)
..+=+.....+++.=+++-|..+...
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555444
No 408
>smart00338 BRLZ basic region leucin zipper.
Probab=37.41 E-value=1.9e+02 Score=22.21 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=27.1
Q ss_pred HHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy13761 344 RNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSIC 387 (402)
Q Consensus 344 vrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkIC 387 (402)
.+..-.+.+..|+..+...+..+..|...+.+...++..|..++
T Consensus 20 ~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 20 SRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555666666666666666667777777777666554
No 409
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=37.40 E-value=97 Score=25.61 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=36.8
Q ss_pred HhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy13761 289 ERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYE 349 (402)
Q Consensus 289 EK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~e 349 (402)
.++.+++..+-..+-.|-+.+.-|..-+ .|-.++..+|+.|-.+|..+.....
T Consensus 13 ~~Le~IV~~LE~gdl~Leesl~lyeeG~--------~L~k~C~~~L~~ae~kv~~l~~~~~ 65 (76)
T PRK14068 13 QELEQIVQKLDNETVSLEESLDLYQRGM--------KLSAACDTTLKNAEKKVNDLIKEEA 65 (76)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3445666666667777777777666555 4777888888888888887765543
No 410
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=37.36 E-value=4.1e+02 Score=26.05 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=51.0
Q ss_pred HhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 245 CVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYD 324 (402)
Q Consensus 245 lIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYq 324 (402)
++.+....++.+-....++.++++....+|...-+.|...++.=|..+...+.-..+-..=+..++-+..++..-.+-.+
T Consensus 101 ~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~e 180 (253)
T cd07676 101 YVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAE 180 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555567778888888888777777777666666666555444333222222333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy13761 325 ALKTHAISQLEKANQDL 341 (402)
Q Consensus 325 ALKaHAEEKLe~ANEEI 341 (402)
.-|..=...|+.+|..-
T Consensus 181 ~aKn~Y~~~l~~~N~~q 197 (253)
T cd07676 181 DSKAEYSSYLQKFNKEQ 197 (253)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333344555555443
No 411
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=37.26 E-value=5.6e+02 Score=27.62 Aligned_cols=150 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHH
Q psy13761 240 NTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQ 319 (402)
Q Consensus 240 ktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkke 319 (402)
+.|.+=|+..++.-....++.+++.++.-.+..++++++.+..+.-..-.+++.-|.....|...|...-.+-..++.+.
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~ 120 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQ 120 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHH-------HHHHHHHH---------HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q psy13761 320 -VNKYD-------ALKTHAIS---------QLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAE 382 (402)
Q Consensus 320 -eQRYq-------ALKaHAEE---------KLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeE 382 (402)
.-=|. +|+-+-++ -+...|.++.+......+.+..|.+.=...+-+-.-|...+-+-..+-..
T Consensus 121 L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~k 200 (420)
T COG4942 121 LAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAK 200 (420)
T ss_pred HHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q psy13761 383 LTSICDD 389 (402)
Q Consensus 383 LTkICDE 389 (402)
|...--|
T Consensus 201 l~~~~~E 207 (420)
T COG4942 201 LAQLLEE 207 (420)
T ss_pred HHHHHHH
No 412
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=37.12 E-value=4.7e+02 Score=26.65 Aligned_cols=67 Identities=13% Similarity=0.232 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHH
Q psy13761 252 DKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKK 318 (402)
Q Consensus 252 ~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkk 318 (402)
.++.....+.....|-++..++|...|+...++-.|..-+|+-+..++.--..+.+.+..+..+|++
T Consensus 194 eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 194 EKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777888888888888888888887777766666666555555555555555555443
No 413
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=36.98 E-value=2.9e+02 Score=24.59 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=2.4
Q ss_pred HhhHHHHHHHHhhHHHHHhh
Q psy13761 279 IAFNDVHLKYERSKVIIEGM 298 (402)
Q Consensus 279 kSFSDLhrRYEK~KevIegy 298 (402)
..|.||-+|-+.+++.+..+
T Consensus 30 ~GF~dL~~R~~~Q~~~~~~~ 49 (141)
T PF13874_consen 30 IGFEDLKKRVEAQEEEIAQH 49 (141)
T ss_dssp ----------------HHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 36888888888888777663
No 414
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=36.88 E-value=4.9e+02 Score=27.54 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=16.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHh
Q psy13761 256 FEKYKKELEKEKEEVQLHLRNSEIA 280 (402)
Q Consensus 256 ~~~eiqkllkERDQa~aDLnS~EkS 280 (402)
....+..+.++.+++...++.++..
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~ 93 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDR 93 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777776655543
No 415
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=36.63 E-value=2.8e+02 Score=25.74 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=13.9
Q ss_pred HHHHHHHHhHHHhhHHHHHH-HHhhHHHHHhhHh
Q psy13761 268 EEVQLHLRNSEIAFNDVHLK-YERSKVIIEGMKA 300 (402)
Q Consensus 268 DQa~aDLnS~EkSFSDLhrR-YEK~KevIegyKk 300 (402)
|.+...|..+=.++.+=.+. -.+..+++.+++.
T Consensus 37 d~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~ 70 (155)
T PF07464_consen 37 DSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKT 70 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHH
Confidence 44444444444444433333 3344444444333
No 416
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=36.49 E-value=3e+02 Score=24.27 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=7.7
Q ss_pred HHHhhHHHHHHHHhhHHHHH
Q psy13761 277 SEIAFNDVHLKYERSKVIIE 296 (402)
Q Consensus 277 ~EkSFSDLhrRYEK~KevIe 296 (402)
+...|.++....+.+...+.
T Consensus 133 ~~~~l~~i~~~~~~i~~~i~ 152 (213)
T PF00015_consen 133 TSESLEEIAESVEEISDSIE 152 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhHHhhhhH
Confidence 33334444333333333333
No 417
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=35.98 E-value=3.3e+02 Score=28.42 Aligned_cols=77 Identities=17% Similarity=0.272 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhh
Q psy13761 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRE--NDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERS 291 (402)
Q Consensus 215 ~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~e--q~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~ 291 (402)
.+++.+++.+.....++..-|.+.++.+..+-.... +......+.++++...+.++...++.++.-+..|-...++.
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567788888888888888888888877666544211 11223344555666666666666666555555554444443
No 418
>KOG3647|consensus
Probab=35.93 E-value=5.2e+02 Score=26.88 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=41.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHH
Q psy13761 256 FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRA 307 (402)
Q Consensus 256 ~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk 307 (402)
+...|+.+..+-.+..+-||++-.--+.|-.+.+|-|--++..++--++|..
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lqs 161 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQS 161 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777888888888888888888888888888888888887777777754
No 419
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=35.88 E-value=3.1e+02 Score=24.29 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q psy13761 230 SYQKMLNDYENTITQCVNQREN 251 (402)
Q Consensus 230 eM~~Im~EYEktI~qlIeE~eq 251 (402)
-+.++|++-+..|...+++.++
T Consensus 31 Pi~~~l~~R~~~I~~~l~~A~~ 52 (141)
T PRK08476 31 PLLKFMDNRNASIKNDLEKVKT 52 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666655443
No 420
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=35.81 E-value=3.2e+02 Score=24.30 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhH
Q psy13761 226 KENASYQKMLNDYENTITQCVNQREN---DKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANE 302 (402)
Q Consensus 226 ~~n~eM~~Im~EYEktI~qlIeE~eq---~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNE 302 (402)
+....|..||.+|-......|..-.. .-..++..+..+...-..+...|.+--....+|+.+.-+.+++|+-+..=|
T Consensus 51 ~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie 130 (142)
T PF04048_consen 51 RIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIE 130 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777776666666644332 223356777777777888888888888888888888888888887765544
No 421
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=35.78 E-value=3.2e+02 Score=24.39 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHh
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYER 290 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK 290 (402)
+++....++.....|...|+.+--.+.+++.+ +......++.+..+++.....++.+++.++|+-+--+.
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL~kq----kd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGELAKQ----KDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666677777777787777766666443 33355556666666666666666666666666444433
No 422
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=35.68 E-value=5.2e+02 Score=27.10 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHH
Q psy13761 333 QLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEE 379 (402)
Q Consensus 333 KLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKE 379 (402)
+.+..+++|....... .+..+|.+..+...-++..|+.++.....+
T Consensus 50 ~rn~~sk~i~~~~~~~-~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 95 (425)
T PRK05431 50 ERNALSKEIGQAKRKG-EDAEALIAEVKELKEEIKALEAELDELEAE 95 (425)
T ss_pred HHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555432221 234445555555555555555544444433
No 423
>KOG3190|consensus
Probab=35.57 E-value=4.9e+02 Score=26.41 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHhhHHHHH-HhhHHHH
Q psy13761 300 ANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTY------EMETTKLKAMLKKSEMQ-ITSLQES 372 (402)
Q Consensus 300 kNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~------eaE~~aLqA~LKKeEmk-v~SLEes 372 (402)
+|++.+.+...++...+.....|.++.+.||+.-.+.-..+++++...+ .+|...+-+..|-.+|+ -.-|+.=
T Consensus 154 k~~~~~~q~~rq~~~~~~s~ker~~~ekr~~~~~~elk~~e~e~~k~G~~Py~LKKsE~Rkl~~~~Ky~~lK~skkLdky 233 (256)
T KOG3190|consen 154 KAEEKIDQLERQMTQHLMSTKERTQAEKRHAETRKELKDDERERAKEGKRPYFLKKSEQRKLDQEEKYKELKKSKKLDKY 233 (256)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3445555556666667777788999999999999999999999988765 57888888888888888 6677888
Q ss_pred HHHHHHHH
Q psy13761 373 LARKTEEN 380 (402)
Q Consensus 373 LEQKtKEN 380 (402)
|+.|.+.|
T Consensus 234 lerKRkk~ 241 (256)
T KOG3190|consen 234 LERKRKKR 241 (256)
T ss_pred HHHHHHHh
Confidence 88887765
No 424
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=35.47 E-value=5.5e+02 Score=27.49 Aligned_cols=79 Identities=11% Similarity=0.199 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy13761 306 RARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTS 385 (402)
Q Consensus 306 Kk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTk 385 (402)
+.+|++|...-+...+-|..+++ .+..=+.++.+-..++.++..+...++..|-+-.+|...|+.-..=-+.|..
T Consensus 3 ~~si~dy~~e~~~~~~Lh~~i~~-----cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~ 77 (508)
T PF04129_consen 3 RESIQDYLKESENFADLHNQIQE-----CDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSP 77 (508)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45788888888888888888753 3444556777778888888888888888888888888777766555555554
Q ss_pred HHHH
Q psy13761 386 ICDD 389 (402)
Q Consensus 386 ICDE 389 (402)
+-|+
T Consensus 78 ~i~~ 81 (508)
T PF04129_consen 78 FIDD 81 (508)
T ss_pred HHHH
Confidence 4443
No 425
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=35.45 E-value=5.7e+02 Score=27.17 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=9.8
Q ss_pred HhhHHHHHHHHhhHHHHHhh
Q psy13761 279 IAFNDVHLKYERSKVIIEGM 298 (402)
Q Consensus 279 kSFSDLhrRYEK~KevIegy 298 (402)
+.|..|-+.|-.+..++.-|
T Consensus 33 ~~~~~lske~a~l~~iv~~~ 52 (363)
T COG0216 33 DEYRKLSKEYAELEPIVEKY 52 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544443
No 426
>KOG4687|consensus
Probab=35.40 E-value=5.4e+02 Score=26.92 Aligned_cols=60 Identities=12% Similarity=0.131 Sum_probs=50.6
Q ss_pred HHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 272 LHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAI 331 (402)
Q Consensus 272 aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAE 331 (402)
+++..+-+.|+.||++.----+.|--+.+.=|.....-..|..+++..+-+|.+++...+
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~e 68 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELE 68 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 466677889999999988777888888888888888888899999999999999986543
No 427
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=35.36 E-value=3.5e+02 Score=24.75 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=42.6
Q ss_pred HHhHHHHHHHHHHhHH-HhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 263 LEKEKEEVQLHLRNSE-IAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDL 341 (402)
Q Consensus 263 llkERDQa~aDLnS~E-kSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEI 341 (402)
+...-..++.++..++ ..|+.+....++++.-++.++. .|+..+......++- -+..-|.+..+....-+..|
T Consensus 56 ~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~---~L~~ei~~l~a~~kl---D~n~eK~~~r~e~~~~~~ki 129 (177)
T PF07798_consen 56 FKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQ---ELREEINKLRAEVKL---DLNLEKGRIREEQAKQELKI 129 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHH
Confidence 3334444555554444 3466666666666655544332 233333322221111 12223334444444445556
Q ss_pred HHHHHhhHHHHHHHHHHhh
Q psy13761 342 DLRNKTYEMETTKLKAMLK 360 (402)
Q Consensus 342 aqvrsk~eaE~~aLqA~LK 360 (402)
.++..+...++..|++.+-
T Consensus 130 ~e~~~ki~~ei~~lr~~iE 148 (177)
T PF07798_consen 130 QELNNKIDTEIANLRTEIE 148 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666665555543
No 428
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=35.29 E-value=2.9e+02 Score=23.75 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHH
Q psy13761 231 YQKMLNDYENTITQCVNQRENDKKQ 255 (402)
Q Consensus 231 M~~Im~EYEktI~qlIeE~eq~k~~ 255 (402)
+..+|++-...|...+.+.+..+..
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~~e 54 (140)
T PRK07353 30 VGKVVEEREDYIRTNRAEAKERLAE 54 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554433333
No 429
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=35.23 E-value=3.1e+02 Score=24.01 Aligned_cols=85 Identities=21% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHH
Q psy13761 295 IEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLA 374 (402)
Q Consensus 295 IegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLE 374 (402)
+..+-.|++.+..-+...-.--.....+=..+. +|+.+++-.-..+.++..+++.+...-.....|+.+..
T Consensus 9 L~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~---------~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~ 79 (150)
T PF07200_consen 9 LQELLSDEEKLDAFVKSLPQVQELQQEREELLA---------ENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQ 79 (150)
T ss_dssp HHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHH---------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHH---------HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q psy13761 375 RKTEENAELTSICD 388 (402)
Q Consensus 375 QKtKENeELTkICD 388 (402)
.|.++..++..-+.
T Consensus 80 ~k~~~~~~l~~~~s 93 (150)
T PF07200_consen 80 EKEQQQDELSSNYS 93 (150)
T ss_dssp HHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHccCC
No 430
>KOG0963|consensus
Probab=34.98 E-value=7.2e+02 Score=28.22 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=12.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH
Q psy13761 363 EMQITSLQESLARKTEENAELT 384 (402)
Q Consensus 363 Emkv~SLEesLEQKtKENeELT 384 (402)
-.+|.+|+..+..|..+.+||-
T Consensus 316 ~~qI~~le~~l~~~~~~leel~ 337 (629)
T KOG0963|consen 316 KAQISALEKELKAKISELEELK 337 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555553
No 431
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.62 E-value=4.7e+02 Score=25.98 Aligned_cols=60 Identities=10% Similarity=0.153 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHHHHHHHhHHHHHHHHHHhHHHhh
Q psy13761 222 EKLKKENASYQKMLNDYENTITQCVNQREN-------DKKQFEKYKKELEKEKEEVQLHLRNSEIAF 281 (402)
Q Consensus 222 e~l~~~n~eM~~Im~EYEktI~qlIeE~eq-------~k~~~~~eiqkllkERDQa~aDLnS~EkSF 281 (402)
..+-.....|...|+.|-..+..+.+.... +=..+-..+..+++-|||.+.|+..+...-
T Consensus 103 ~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~vlK~RdqkQ~d~E~l~E~l 169 (240)
T cd07667 103 GELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILYSESMKNVLKKRDQVQAEYEAKLEAV 169 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456667777788887777777764321 222245677889999999999977765553
No 432
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=34.57 E-value=3.6e+02 Score=24.57 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHH-HHHHH-HhhH
Q psy13761 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFND-VHLKY-ERSK 292 (402)
Q Consensus 215 ~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSD-LhrRY-EK~K 292 (402)
+-|++.-........+|...+.+|++.-+.. ..+-..++...+.+.....+-+.+..++++ |=+++ .+.+
T Consensus 25 ~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~--------~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e 96 (146)
T PF08702_consen 25 DFLDKYERDVDKDIQELENLLDQISNSTSEA--------FEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILE 96 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHhhhhH--------HHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 3344444455555566666666665543321 111222333344444344444455555553 34455 6666
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 293 VIIEGMKANEDHLRARHSELEEELKKQVNKYDA 325 (402)
Q Consensus 293 evIegyKkNEE~LKk~ieey~~rvkkeeQRYqA 325 (402)
.++.++-.|-..|+.-+.....++.++++.-.+
T Consensus 97 ~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~ 129 (146)
T PF08702_consen 97 TKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQ 129 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666666666555555555554443
No 433
>KOG0239|consensus
Probab=34.51 E-value=7.2e+02 Score=28.09 Aligned_cols=26 Identities=27% Similarity=0.170 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 302 EDHLRARHSELEEELKKQVNKYDALK 327 (402)
Q Consensus 302 EE~LKk~ieey~~rvkkeeQRYqALK 327 (402)
...++..++.+........++.++|+
T Consensus 222 ~~~~~~~~~~l~~~~~~~~~~i~~l~ 247 (670)
T KOG0239|consen 222 YADLRRNIKPLEGLESTIKKKIQALQ 247 (670)
T ss_pred hhhHHHhhhhhhhhhhHHHHHHHHHH
Confidence 33444444444444444444434333
No 434
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=34.38 E-value=4.3e+02 Score=27.55 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=17.3
Q ss_pred HHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHH
Q psy13761 273 HLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHS 310 (402)
Q Consensus 273 DLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ie 310 (402)
|.+.+++.|-+|...+...++-++.+.+....-.+.|.
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~ 42 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSIS 42 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554445555544444333333333
No 435
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=34.33 E-value=2.7e+02 Score=23.07 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHH---HHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 255 QFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLK---YERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDAL 326 (402)
Q Consensus 255 ~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrR---YEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqAL 326 (402)
....+...+..+.+.+++..|.+-+.+..+.+. .+.++.-+.. +|+.+.++...+...+.++..+
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~-------lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKE-------LKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
No 436
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=34.07 E-value=4.2e+02 Score=25.27 Aligned_cols=106 Identities=18% Similarity=0.163 Sum_probs=61.1
Q ss_pred HHHhhHHHHHHHHh-hHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy13761 277 SEIAFNDVHLKYER-SKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKL 355 (402)
Q Consensus 277 ~EkSFSDLhrRYEK-~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aL 355 (402)
+.+.|+.=+.-|+. +|+++.-+..=...+...+.+|.++-+ +.|.+.++++-.+....++-........+...-+.-
T Consensus 65 ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k--~~k~~~i~~~~~~~~~~~~v~~~~fe~~~~~~wlnk 142 (215)
T PF07083_consen 65 IKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFEEKEK--EEKREKIKEYFEEMAEEYGVDPEPFERIIKPKWLNK 142 (215)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCChHHHhhhcchHHhhc
Confidence 44555555555543 455555555555556666766666533 568889999999988888844444443355555555
Q ss_pred HHHhhHHHHHHhhHHHHHHHHHHHHHHHH
Q psy13761 356 KAMLKKSEMQITSLQESLARKTEENAELT 384 (402)
Q Consensus 356 qA~LKKeEmkv~SLEesLEQKtKENeELT 384 (402)
...+++..-.+.++-..+.+.-.+.....
T Consensus 143 s~s~kk~~eei~~~i~~~~~~~~~~~~~~ 171 (215)
T PF07083_consen 143 SYSLKKIEEEIDDQIDKIKQDLEEIKAAK 171 (215)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666655555554444444444443333
No 437
>KOG2273|consensus
Probab=33.97 E-value=5.8e+02 Score=26.81 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy13761 227 ENASYQKMLNDYENTITQCV 246 (402)
Q Consensus 227 ~n~eM~~Im~EYEktI~qlI 246 (402)
..-+|...+++|-+..+++-
T Consensus 303 ~~~~l~~~~~~~g~~~~~l~ 322 (503)
T KOG2273|consen 303 RRRELASNLAELGKALAQLS 322 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44456666666665555443
No 438
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=33.52 E-value=75 Score=25.43 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccccc
Q psy13761 348 YEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSSC 397 (402)
Q Consensus 348 ~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~~~ 397 (402)
++.-+..|...+++.|----+|++++..-.+=. +|.+.|.+.+.+++..
T Consensus 3 fEe~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~-~L~k~c~~~L~~ae~k 51 (67)
T TIGR01280 3 FEEALSELEQIVQKLESGDLALEEALNLFERGM-ALARRCEKKLAQAEQR 51 (67)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 566778889999999999999999988766555 8999999998887653
No 439
>PRK11519 tyrosine kinase; Provisional
Probab=33.50 E-value=7.1e+02 Score=27.70 Aligned_cols=32 Identities=22% Similarity=0.134 Sum_probs=19.5
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHH
Q psy13761 257 EKYKKELEKEKEEVQLHLRNSEIAFNDVHLKY 288 (402)
Q Consensus 257 ~~eiqkllkERDQa~aDLnS~EkSFSDLhrRY 288 (402)
...+.=+..+-+.+..+|...|.++.+.-+++
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444566666677777777777766654443
No 440
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=33.41 E-value=7.1e+02 Score=27.63 Aligned_cols=69 Identities=12% Similarity=0.212 Sum_probs=44.1
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 257 EKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDA 325 (402)
Q Consensus 257 ~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqA 325 (402)
...+..|+.++=-..-+=|.+++.+-.||.-....+.-+..-+.--++|-=.++-....+--++.||.+
T Consensus 368 k~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 368 KENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred HHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 445566666666666666667777777776666666666665666666666666666666666666665
No 441
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=33.13 E-value=5.4e+02 Score=28.18 Aligned_cols=82 Identities=21% Similarity=0.240 Sum_probs=0.0
Q ss_pred HhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhh
Q psy13761 289 ERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITS 368 (402)
Q Consensus 289 EK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~S 368 (402)
+.++.++-.+|. +++.++.....-+.+..+-+.|+..-..-=.+.+..++..+.....+...|+..+.+.+..+.+
T Consensus 59 DTlrTlva~~k~----~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 59 DTLRTLVAEVKE----LRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q psy13761 369 LQESLA 374 (402)
Q Consensus 369 LEesLE 374 (402)
|+++|+
T Consensus 135 l~~~l~ 140 (472)
T TIGR03752 135 LQRRLA 140 (472)
T ss_pred HHHHHh
No 442
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=33.05 E-value=4.1e+02 Score=27.80 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q psy13761 333 QLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAE 382 (402)
Q Consensus 333 KLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeE 382 (402)
+.+.++++|.+..+..+.+..+|.+..+...-++..|+.++.....+..+
T Consensus 52 erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 52 KRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666655333222115566666666666666666665555544443
No 443
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=32.72 E-value=4.2e+02 Score=24.86 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy13761 305 LRARHSELEEELKKQVNKYDAL 326 (402)
Q Consensus 305 LKk~ieey~~rvkkeeQRYqAL 326 (402)
+.+.+......+.+...+|..+
T Consensus 117 l~~~~~~~~~~l~kskk~Y~~~ 138 (251)
T cd07653 117 LQQKLESSIKQLEKSKKAYEKA 138 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444433
No 444
>PRK11519 tyrosine kinase; Provisional
Probab=32.70 E-value=7.3e+02 Score=27.61 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=9.1
Q ss_pred HHHHHHHHhHHHHHHHHHHh
Q psy13761 257 EKYKKELEKEKEEVQLHLRN 276 (402)
Q Consensus 257 ~~eiqkllkERDQa~aDLnS 276 (402)
+.++..+..+-+.+...|+.
T Consensus 273 ~~ql~~l~~~L~~aE~~l~~ 292 (719)
T PRK11519 273 AQQLPEVRSRLDVAENKLNA 292 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 445
>KOG2196|consensus
Probab=32.65 E-value=5.4e+02 Score=26.09 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---------HHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHH
Q psy13761 313 EEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEM---------ETTKLKAMLKKSEMQITSLQESLARKTEENAEL 383 (402)
Q Consensus 313 ~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~ea---------E~~aLqA~LKKeEmkv~SLEesLEQKtKENeEL 383 (402)
..+...+.++--.+-..--++|..+.+.+.++..+... .+.-+--.|.-+--.++.|+...-|..+..+.+
T Consensus 166 ~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~~~~qi~Kilnah~~sLqwl~d~st~~e~k~d~i 245 (254)
T KOG2196|consen 166 LSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTDPIIQIEKILNAHMDSLQWLDDNSTQLEKKLDKI 245 (254)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55666665555556777788888888888777665321 111111112222234556666677788888999
Q ss_pred HHHHHH
Q psy13761 384 TSICDD 389 (402)
Q Consensus 384 TkICDE 389 (402)
.|+||+
T Consensus 246 ~K~~~~ 251 (254)
T KOG2196|consen 246 KKLKDD 251 (254)
T ss_pred Hhhhcc
Confidence 999997
No 446
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=32.53 E-value=2e+02 Score=24.13 Aligned_cols=63 Identities=11% Similarity=0.189 Sum_probs=42.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHH
Q psy13761 213 TSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYE 289 (402)
Q Consensus 213 ~~~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYE 289 (402)
++++++.-+..+..+...|-++|++=- + .+.+.-.---+-|-++.+.+..+-++|.-|..||.
T Consensus 12 ~skWL~~~l~dmd~kvk~mlklieedg--------d------SfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD 74 (74)
T PF07765_consen 12 QSKWLQENLSDMDEKVKAMLKLIEEDG--------D------SFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD 74 (74)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCc--------c------hHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 457888888888888888888877611 1 01111111356677888888888888888888873
No 447
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=32.32 E-value=8.3e+02 Score=28.09 Aligned_cols=131 Identities=27% Similarity=0.369 Sum_probs=81.0
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHH----------HHHHH
Q psy13761 250 ENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEE----------ELKKQ 319 (402)
Q Consensus 250 eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~----------rvkke 319 (402)
+.+-+.+...+..+..|+|.+..-.+.+-++..++=.-.-++|.-|..||--|..|-.-..++++ .++..
T Consensus 40 ~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~s 119 (717)
T PF09730_consen 40 ENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQS 119 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 33334445556666677777777666677777777777777777777887777776655554443 35555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy13761 320 VNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKA-MLKKSEMQITSLQESLARKTEENAELTS 385 (402)
Q Consensus 320 eQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA-~LKKeEmkv~SLEesLEQKtKENeELTk 385 (402)
+-.|+.|| | .|.+..+|+..++++.+ |+..|+- .=|..+--+.+|+.+=+||..=-.||..
T Consensus 120 QvefE~~K-h---ei~rl~Ee~~~l~~qle-e~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 120 QVEFEGLK-H---EIKRLEEEIELLNSQLE-EAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHH-H---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777 3 34555666666666543 3333332 2233566677777777777655555543
No 448
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=32.19 E-value=6e+02 Score=26.46 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=16.5
Q ss_pred HhHHHHHHHHHHhHHHhhHHHHHHHHhh
Q psy13761 264 EKEKEEVQLHLRNSEIAFNDVHLKYERS 291 (402)
Q Consensus 264 lkERDQa~aDLnS~EkSFSDLhrRYEK~ 291 (402)
..--+|...+..+++..|.+.-...+|+
T Consensus 219 R~hleqm~~~~~~I~~~~~~~~~~L~kl 246 (359)
T PF10498_consen 219 RSHLEQMKQHKKSIESALPETKSQLDKL 246 (359)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444566666666666666665555543
No 449
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=32.18 E-value=4.4e+02 Score=24.88 Aligned_cols=119 Identities=20% Similarity=0.271 Sum_probs=61.1
Q ss_pred HHHhHHHHHHHHHH-hHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 262 ELEKEKEEVQLHLR-NSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQD 340 (402)
Q Consensus 262 kllkERDQa~aDLn-S~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEE 340 (402)
.+-....++...|. .+...|..++..+++.+..+.+ .=+.+.+........+.+...+|+..-. +++.+..+
T Consensus 71 ~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~---~~~k~~k~~~~~~~~l~KaK~~Y~~~c~----~~e~~~~~ 143 (236)
T cd07651 71 SMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQS---HMEKLLKKKQDQEKYLEKAREKYEADCS----KINSYTLQ 143 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHH
Confidence 34444555555555 3666677777777666655433 2234555555566666666666664332 12222221
Q ss_pred HHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHH--------HHHHHHHHHHH
Q psy13761 341 LDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEE--------NAELTSICDDL 390 (402)
Q Consensus 341 Iaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKE--------NeELTkICDEL 390 (402)
.. .-...++.++++.++|.+..+.......++...+ ..+++.+||.|
T Consensus 144 ~~---~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~ 198 (236)
T cd07651 144 SQ---LTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDF 198 (236)
T ss_pred Hc---ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0112456666666666666555554444443333 34556666654
No 450
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=32.01 E-value=2.8e+02 Score=27.69 Aligned_cols=35 Identities=29% Similarity=0.190 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy13761 325 ALKTHAISQLEKANQDLDLRNKTYEMETTKLKAML 359 (402)
Q Consensus 325 ALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~L 359 (402)
.|..--.++|+.-.+.|.+.......+...|+..|
T Consensus 6 ~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l 40 (304)
T PF02646_consen 6 QLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQL 40 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444
No 451
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=31.90 E-value=3.1e+02 Score=23.03 Aligned_cols=86 Identities=14% Similarity=0.232 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHH
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIE 296 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIe 296 (402)
|...+++++........=+..+|.-+..+..|+.+..+. +-.+-+.+|.+..++.. |-.-..|..++|+
T Consensus 8 ~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqk----yfa~mr~~d~l~~e~k~-------L~~~~~Ks~~~i~ 76 (96)
T PF08647_consen 8 MEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQK----YFAAMRSKDALDNEMKK-------LNTQLSKSSELIE 76 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHH-------HHHHHHHhHHHHH
Confidence 344445555555554444555666666666665544443 23334444444444443 3344567788888
Q ss_pred hhHhhHHHHHHHHHHHH
Q psy13761 297 GMKANEDHLRARHSELE 313 (402)
Q Consensus 297 gyKkNEE~LKk~ieey~ 313 (402)
.++..|-.+...+...+
T Consensus 77 ~L~~~E~~~~~~l~~~E 93 (96)
T PF08647_consen 77 QLKETEKEFVRKLKNLE 93 (96)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88887777777666554
No 452
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=31.87 E-value=4.6e+02 Score=25.05 Aligned_cols=105 Identities=20% Similarity=0.223 Sum_probs=76.4
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHH
Q psy13761 243 TQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNK 322 (402)
Q Consensus 243 ~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQR 322 (402)
.++++..+++-.+.+.-++.....-.+...-++....+..+....++.++..+...+.|-......+......+....+-
T Consensus 66 q~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qL 145 (188)
T PF05335_consen 66 QQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQL 145 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666777777777778888888888888999999999999999999888888888888887777666
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHh
Q psy13761 323 YDALKTHAI---SQLEKANQDLDLRNKT 347 (402)
Q Consensus 323 YqALKaHAE---EKLe~ANEEIaqvrsk 347 (402)
.++-|.+.+ .+|..|..+++..++.
T Consensus 146 LeaAk~Rve~L~~QL~~Ar~D~~~tk~a 173 (188)
T PF05335_consen 146 LEAAKRRVEELQRQLQAARADYEKTKKA 173 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555443 3555555555555543
No 453
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=31.80 E-value=3.3e+02 Score=27.50 Aligned_cols=92 Identities=25% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHH
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIE 296 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIe 296 (402)
++..+++++.+..+....+++....+.. .++.+..+..+.+.+..+...++......-.|..+....+.
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~-----------l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~ 287 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAE-----------LEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLIS 287 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHh
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHH
Q psy13761 297 GMKANEDHLRARHSELEEELKKQ 319 (402)
Q Consensus 297 gyKkNEE~LKk~ieey~~rvkke 319 (402)
|+...-..-...+.++...+...
T Consensus 288 ~L~~E~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 288 GLSGEKERWSEQIEELEEQLKNL 310 (344)
T ss_dssp CCHHHHHCCHCHHHHHHHHHHHH
T ss_pred hhcchhhhHHHHHHHHHHHhccc
No 454
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=31.70 E-value=2.9e+02 Score=22.65 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 369 LQESLARKTEENAELTSICDDLIS 392 (402)
Q Consensus 369 LEesLEQKtKENeELTkICDELIs 392 (402)
+-..|..+..++.++...+..||.
T Consensus 89 ~~~~l~~~~~~~~~~n~~N~~ll~ 112 (143)
T PF05130_consen 89 LWRELRELLEELQELNERNQQLLE 112 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 455
>TIGR02131 phaP_Bmeg polyhydroxyalkanoic acid inclusion protein PhaP. This model describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage (see McCool,G.J. and Cannon,M.C, 1999).
Probab=31.65 E-value=4.5e+02 Score=24.88 Aligned_cols=50 Identities=8% Similarity=0.262 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHH
Q psy13761 227 ENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFND 283 (402)
Q Consensus 227 ~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSD 283 (402)
..+=+...-+.||.|+.++|++.+.++++. .+..|....+..|..++|+.
T Consensus 112 SlSil~Qt~~QfeettkqfiEqqq~qReE~-------Q~qld~fleefKS~Q~e~ak 161 (165)
T TIGR02131 112 SLSILKQAQEQFEETTKQFIEEQKKQREEA-------QHQLDAFLEEFKSKQKEFAK 161 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 444556667899999999999977777664 44455566666676666654
No 456
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=31.61 E-value=7.7e+02 Score=27.49 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=20.7
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHH
Q psy13761 257 EKYKKELEKEKEEVQLHLRNSEIAFNDVHLKY 288 (402)
Q Consensus 257 ~~eiqkllkERDQa~aDLnS~EkSFSDLhrRY 288 (402)
...+.-+..+-..+..+|...|.++.++=+++
T Consensus 266 ~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 266 SQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445566666777777777777776665554
No 457
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=31.59 E-value=1.1e+02 Score=22.96 Aligned_cols=49 Identities=27% Similarity=0.339 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Q psy13761 349 EMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSSCV 398 (402)
Q Consensus 349 eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~~~~ 398 (402)
+.-+..|...+++.+..--||++++..=.+ =.+|.+-|.+.+.+++..+
T Consensus 2 Ee~~~~Le~Iv~~Le~~~~sLdes~~lyee-g~~l~~~c~~~L~~~e~~i 50 (53)
T PF02609_consen 2 EEAMERLEEIVEKLESGELSLDESLKLYEE-GMELIKKCQERLEEAEQKI 50 (53)
T ss_dssp HHHHHHHHHHHHHHHTT-S-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 455778888899999888899888876554 4589999999998876543
No 458
>KOG0742|consensus
Probab=31.53 E-value=7.7e+02 Score=27.49 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=0.0
Q ss_pred hHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHH
Q psy13761 291 SKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQ 370 (402)
Q Consensus 291 ~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLE 370 (402)
.|+|.+-.+.-|++.....+ -..+.|+|+.+|++..-.++-.|=.+---++++....-+|.--- ++...-.+
T Consensus 94 aK~vfel~r~qE~Trq~E~~-------~k~~~~eA~qa~~~~er~r~~~Ee~rk~lq~qaq~k~q~arYqD-~larkr~~ 165 (630)
T KOG0742|consen 94 AKDVFELARMQEQTRQAEQQ-------AKTKEYEAAQAQLKSERIRVQAEERRKTLQEETQQKQQRARYQD-KLARKRYE 165 (630)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13761 371 ESLARKTEENAELTSICDD 389 (402)
Q Consensus 371 esLEQKtKENeELTkICDE 389 (402)
.+++++..-|+||.+.-++
T Consensus 166 ~e~e~qr~~n~ElvrmQEe 184 (630)
T KOG0742|consen 166 DELEAQRRLNEELVRMQEE 184 (630)
T ss_pred HHHHHHHHHhHHHHHHhHH
No 459
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=31.40 E-value=3.9e+02 Score=24.02 Aligned_cols=80 Identities=21% Similarity=0.275 Sum_probs=32.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhH-HHHHhhHhhHHHHHHHHHHHHHHHHHHHH
Q psy13761 243 TQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSK-VIIEGMKANEDHLRARHSELEEELKKQVN 321 (402)
Q Consensus 243 ~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~K-evIegyKkNEE~LKk~ieey~~rvkkeeQ 321 (402)
++......+.......++..+...+....+.+.+....+..|-..-++++ ++-...++--+.|-=|+.+....+.++..
T Consensus 26 ~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~ 105 (136)
T PF04871_consen 26 SQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKE 105 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444443333333 11123333333333344444444444333
Q ss_pred H
Q psy13761 322 K 322 (402)
Q Consensus 322 R 322 (402)
|
T Consensus 106 r 106 (136)
T PF04871_consen 106 R 106 (136)
T ss_pred H
Confidence 3
No 460
>KOG2273|consensus
Probab=31.39 E-value=6.4e+02 Score=26.51 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 301 NEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRN 345 (402)
Q Consensus 301 NEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvr 345 (402)
.-..+...+.+|...+.....-|.+..+ |..++..|..++...+
T Consensus 357 ~~~~~~~~l~~~i~~~~~~k~~~~~r~~-~~~~~~~~~~~~~~~~ 400 (503)
T KOG2273|consen 357 DSKKLAEQLREYIRYLESVKSLFEQRSK-ALQKLQEAQRELSSKK 400 (503)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHH
Confidence 3344555555555555555555554444 5555555555544443
No 461
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=31.37 E-value=6.2e+02 Score=26.33 Aligned_cols=124 Identities=19% Similarity=0.180 Sum_probs=76.6
Q ss_pred HHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy13761 263 LEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSEL---EEELKKQVNKYDALKTHAISQLEKAN- 338 (402)
Q Consensus 263 llkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey---~~rvkkeeQRYqALKaHAEEKLe~AN- 338 (402)
+-.-||+++.--=.+|..-.||.+-.-++|++=.-|..-+..+.+++..- ++|+-+.+..-.-|...-+.--++|+
T Consensus 167 lh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ 246 (305)
T PF14915_consen 167 LHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADN 246 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777667888889999999999997666655566666655432 45555555555555443333333332
Q ss_pred H--HHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q psy13761 339 Q--DLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSS 396 (402)
Q Consensus 339 E--EIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~~ 396 (402)
. -+..+...+.+=+..|+|.-.|.-. - ....|.||+.=|+.|-..+-.
T Consensus 247 kek~ViniQ~~f~d~~~~L~ae~ekq~l---l-------lEErNKeL~ne~n~LkEr~~q 296 (305)
T PF14915_consen 247 KEKTVINIQDQFQDIVKKLQAESEKQVL---L-------LEERNKELINECNHLKERLYQ 296 (305)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH---H-------HHHHhHHHHHHHHHHHHHHHH
Confidence 2 2455555555555666655443222 1 345688999999999776543
No 462
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=31.20 E-value=4.7e+02 Score=24.88 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=40.5
Q ss_pred HhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 264 EKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDAL 326 (402)
Q Consensus 264 lkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqAL 326 (402)
..+++.+...+..+|.-...|.+.-..++..-+...+.-..++.|+..+.+.+...+.+|+..
T Consensus 123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666555555555555666667777777777777777777654
No 463
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=30.88 E-value=4.1e+02 Score=24.10 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHH
Q psy13761 231 YQKMLNDYENTITQCVNQRENDKKQF 256 (402)
Q Consensus 231 M~~Im~EYEktI~qlIeE~eq~k~~~ 256 (402)
+.++|++=...|..-+.+.+..+..+
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA 68 (175)
T PRK14472 43 ILSALEEREKGIQSSIDRAHSAKDEA 68 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665555444443
No 464
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=30.71 E-value=2.6e+02 Score=23.31 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHH
Q psy13761 335 EKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESL 373 (402)
Q Consensus 335 e~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesL 373 (402)
..|+..++..+..++.+..++.+.+.-..-.+..++.++
T Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 118 (120)
T PF11740_consen 80 EEAEEELEAARAELEQERAAAEAELAEAEAQAEELEAEL 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555555444444444443
No 465
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=30.57 E-value=5.2e+02 Score=25.22 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=22.8
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHH
Q psy13761 248 QRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDV 284 (402)
Q Consensus 248 E~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDL 284 (402)
+.++.++.+...+.++..+-..+...|.-.+..-..|
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~L 38 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEESEETAEEL 38 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777776665444443333
No 466
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=30.50 E-value=3.9e+02 Score=23.72 Aligned_cols=9 Identities=0% Similarity=0.283 Sum_probs=3.9
Q ss_pred HHHHHHhhh
Q psy13761 240 NTITQCVNQ 248 (402)
Q Consensus 240 ktI~qlIeE 248 (402)
+-|..+|++
T Consensus 30 kPi~~~l~~ 38 (141)
T PRK08476 30 KPLLKFMDN 38 (141)
T ss_pred HHHHHHHHH
Confidence 334444444
No 467
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=30.31 E-value=9.1e+02 Score=27.96 Aligned_cols=111 Identities=12% Similarity=0.234 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy13761 251 NDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQ-VNKYDALKTH 329 (402)
Q Consensus 251 q~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkke-eQRYqALKaH 329 (402)
...+...++++.+.....++...|.-...+.+.+...++-.+.-......+-..|+..+......+.+. +.|.--+-.+
T Consensus 507 ~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsr 586 (739)
T PF07111_consen 507 RAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESR 586 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777777777777777777777777776666666655555666666766666655555533 4455566677
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Q psy13761 330 AISQLEKANQDLDLRNKTYEMETTKLKAMLKK 361 (402)
Q Consensus 330 AEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKK 361 (402)
--++|...-..+...|+.|..-+.+|+-.=|+
T Consensus 587 l~E~L~~~E~rLNeARREHtKaVVsLRQ~qrq 618 (739)
T PF07111_consen 587 LREQLSEMEKRLNEARREHTKAVVSLRQIQRQ 618 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778777788888888888777777655444
No 468
>KOG4403|consensus
Probab=30.20 E-value=7.9e+02 Score=27.21 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=15.9
Q ss_pred HHHHhHHHhhHHHHHHHHhhHHH
Q psy13761 272 LHLRNSEIAFNDVHLKYERSKVI 294 (402)
Q Consensus 272 aDLnS~EkSFSDLhrRYEK~Kev 294 (402)
+.|.-+|.+|-||.+|.+|.++-
T Consensus 252 e~Lq~aEqsl~dlQk~Lekar~e 274 (575)
T KOG4403|consen 252 EGLQRAEQSLEDLQKRLEKAREE 274 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555777888888877777664
No 469
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=30.11 E-value=3.3e+02 Score=22.79 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=18.2
Q ss_pred HHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 292 KVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHA 330 (402)
Q Consensus 292 KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHA 330 (402)
.+++..+.+.-+.+...+..+...++..+..+..++.+.
T Consensus 62 ~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 62 EEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443
No 470
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=29.93 E-value=2.6e+02 Score=21.44 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=21.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy13761 362 SEMQITSLQESLARKTEENAELTSICDDLISKL 394 (402)
Q Consensus 362 eEmkv~SLEesLEQKtKENeELTkICDELIsK~ 394 (402)
-...+..|+..+...+.+|..|..-++.|-..+
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777777777665443
No 471
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=29.79 E-value=2.4e+02 Score=23.66 Aligned_cols=31 Identities=23% Similarity=0.167 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy13761 321 NKYDALKTHAISQLEKANQDLDLRNKTYEME 351 (402)
Q Consensus 321 QRYqALKaHAEEKLe~ANEEIaqvrsk~eaE 351 (402)
+|=.+|..|+.+.|+.|-..+..+...+..+
T Consensus 41 erG~~L~k~c~~~L~~Ae~~v~~l~~~~~~~ 71 (81)
T COG1722 41 ERGMALYKECQEKLQQAEQRVEKLLEEDEEE 71 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3445799999999999999999998876554
No 472
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=29.77 E-value=4.8e+02 Score=26.39 Aligned_cols=41 Identities=15% Similarity=0.406 Sum_probs=18.7
Q ss_pred HHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 287 KYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALK 327 (402)
Q Consensus 287 RYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALK 327 (402)
.-..++..+.++...|..|-..|+.-...++..++|.++|+
T Consensus 177 ~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 177 QLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444
No 473
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=29.63 E-value=1.4e+02 Score=27.22 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=20.2
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhh
Q psy13761 258 KYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERS 291 (402)
Q Consensus 258 ~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~ 291 (402)
.+..++..|..++..+++++ |=-|=|+||=|+
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~i--S~qDeFAkwaKl 71 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAI--SAQDEFAKWAKL 71 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS---TTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHH
Confidence 44556777777777777766 445566666554
No 474
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=29.60 E-value=1.2e+02 Score=24.39 Aligned_cols=38 Identities=8% Similarity=0.088 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhh
Q psy13761 331 ISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITS 368 (402)
Q Consensus 331 EEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~S 368 (402)
+.++..|+.-|.-++.+|.+=+.+|.+.+.+.+.+..-
T Consensus 2 ~~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~d 39 (60)
T PF14916_consen 2 EQQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKD 39 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35788899999999999999999998887776655433
No 475
>KOG2150|consensus
Probab=29.43 E-value=8e+02 Score=27.63 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhhhhhhhHH----------------------------
Q psy13761 215 DEKDKLIEKLKK-----------ENASYQKMLNDYENTITQCVNQRENDKKQ---------------------------- 255 (402)
Q Consensus 215 ~~~~~~~e~l~~-----------~n~eM~~Im~EYEktI~qlIeE~eq~k~~---------------------------- 255 (402)
.|+++.|.+||+ .--+=+..+-.|.+.|-+-|+.-.-+.++
T Consensus 45 ~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~~L~d~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEkek~d~~ 124 (575)
T KOG2150|consen 45 SDLKKEIKKLQRLRDQIKTWQSSSDIKDKDSLLDNRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTM 124 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHHHHHHH
Q ss_pred --HHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHH
Q psy13761 256 --FEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNK 322 (402)
Q Consensus 256 --~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQR 322 (402)
....|..|.++-|+..+ ..=..|-..|+=+-...+.|.+.-.|+|...+.+.+..+.+.-..++
T Consensus 125 ~wi~~~ideLe~q~d~~ea---~~~e~~~erh~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe~ 190 (575)
T KOG2150|consen 125 DWISNQIDELERQVDSFEA---EELERFIERHRWHQQKLELILRLLDNDELDPEAVNKVQDDITYYVES 190 (575)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHHh
No 476
>KOG0979|consensus
Probab=29.36 E-value=1.1e+03 Score=28.52 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhHHHh-----hHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 265 KEKEEVQLHLRNSEIA-----FNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQ 339 (402)
Q Consensus 265 kERDQa~aDLnS~EkS-----FSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANE 339 (402)
.||.....-+..|++. |-+.=..|.-.|.+..+.|++...|.+.+.......+..+. .|.....++..+.-
T Consensus 222 rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~----~~~et~~~~s~~~~ 297 (1072)
T KOG0979|consen 222 RERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELES----EKKETRSKISQKQR 297 (1072)
T ss_pred HHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh----HHHhHHHHHHHHHH
Confidence 3444444444444432 34444556666666666666666666666666555555554 33344444444444
Q ss_pred HHHH
Q psy13761 340 DLDL 343 (402)
Q Consensus 340 EIaq 343 (402)
++..
T Consensus 298 ~~~e 301 (1072)
T KOG0979|consen 298 ELNE 301 (1072)
T ss_pred HHHH
Confidence 4333
No 477
>PF15456 Uds1: Up-regulated During Septation
Probab=29.35 E-value=2.7e+02 Score=24.92 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccc
Q psy13761 371 ESLARKTEENAELTSICDDLISKLSS 396 (402)
Q Consensus 371 esLEQKtKENeELTkICDELIsK~~~ 396 (402)
+.+.+-..+..++.+=|||++.++..
T Consensus 74 ~~~~~~eeel~~~~rk~ee~~~eL~~ 99 (124)
T PF15456_consen 74 ESSLKAEEELAESDRKCEELAQELWK 99 (124)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34455566667777777777776543
No 478
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=29.12 E-value=2.7e+02 Score=31.42 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHH
Q psy13761 323 YDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTE 378 (402)
Q Consensus 323 YqALKaHAEEKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtK 378 (402)
-+.|.+..++.++.-+.....++++|+.|+.+|+..+-|.|-...-|.-++...+.
T Consensus 6 L~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~ 61 (654)
T PF09798_consen 6 LELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSS 61 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666666666667777777777777777777777777777777666655543
No 479
>KOG4637|consensus
Probab=29.04 E-value=7.8e+02 Score=26.75 Aligned_cols=102 Identities=23% Similarity=0.192 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHH-------HhhH
Q psy13761 222 EKLKKENASYQKMLNDYENTITQCV--NQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKY-------ERSK 292 (402)
Q Consensus 222 e~l~~~n~eM~~Im~EYEktI~qlI--eE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRY-------EK~K 292 (402)
.+++..+++++.+--+||+.-.... .+.-+.++.+..-..+-++.-+.-..-+++.=+++.|.|+|- |+.+
T Consensus 139 ~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~~~~eqG~qg~~e~~~ 218 (464)
T KOG4637|consen 139 KKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDRFRREQGSQGNSEKEI 218 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCchHHHH
Confidence 4444455555555555554322211 111222333333334444444444556677888999999988 5554
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 293 VIIEGMKANEDHLRARHSELEEELKKQVNKYDAL 326 (402)
Q Consensus 293 evIegyKkNEE~LKk~ieey~~rvkkeeQRYqAL 326 (402)
+ .+-.|...+|..|.+....+...++..++|
T Consensus 219 ~---~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~ 249 (464)
T KOG4637|consen 219 G---RIANNYDKLKSRIREIHDSLTRLEDDLKAL 249 (464)
T ss_pred H---HHHhhhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4 455688888888888888777777766654
No 480
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=28.95 E-value=4.5e+02 Score=23.96 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHH
Q psy13761 231 YQKMLNDYENTITQCVNQRENDKKQ 255 (402)
Q Consensus 231 M~~Im~EYEktI~qlIeE~eq~k~~ 255 (402)
+.++|++-...|..-+.+.++.++.
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~e 67 (173)
T PRK13453 43 LKDVMDKRERDINRDIDDAEQAKLN 67 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666665544444
No 481
>KOG0993|consensus
Probab=28.87 E-value=8.2e+02 Score=26.94 Aligned_cols=97 Identities=25% Similarity=0.319 Sum_probs=63.6
Q ss_pred HHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHh
Q psy13761 283 DVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKAN---QDLDLRNKTYEMETTKLKAML 359 (402)
Q Consensus 283 DLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~AN---EEIaqvrsk~eaE~~aLqA~L 359 (402)
.++.+|+.=+ -.+..|++.++..+.+++..+..-. |+- .-+.++++|. +.+..+.-.-..++..|.+.|
T Consensus 100 q~~~~leqer---tq~qq~~e~~erEv~~l~~llsr~~--~~~---~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl 171 (542)
T KOG0993|consen 100 QMCQNLEQER---TQLQQNEEKLEREVKALMELLSRGQ--YQL---DLENEMDKAKEDEEKLRELVTPMEKEINELKKKL 171 (542)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccc--hhh---hhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455555444 4678888888888887777665411 221 2333444444 345555667788999999999
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 360 KKSEMQITSLQESLARKTEENAELTSICDDL 390 (402)
Q Consensus 360 KKeEmkv~SLEesLEQKtKENeELTkICDEL 390 (402)
-|.+-+|.-|.+..--| -++|--.||-|
T Consensus 172 ~~aE~~i~El~k~~~h~---a~slh~~t~lL 199 (542)
T KOG0993|consen 172 AKAEQRIDELSKAKHHK---AESLHVFTDLL 199 (542)
T ss_pred HhHHHHHHHHHhhhccc---chHHHHHHHHH
Confidence 99999998887544444 45777777755
No 482
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=28.83 E-value=5.4e+02 Score=24.86 Aligned_cols=17 Identities=6% Similarity=0.249 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcccccc
Q psy13761 382 ELTSICDDLISKLSSCV 398 (402)
Q Consensus 382 ELTkICDELIsK~~~~~ 398 (402)
-+..+.++.|..++...
T Consensus 160 ~i~~lv~~al~~l~~~~ 176 (255)
T TIGR03825 160 AFQALVRQVLSEVREFD 176 (255)
T ss_pred HHHHHHHHHHHhccCCC
Confidence 36788888888877643
No 483
>PRK13411 molecular chaperone DnaK; Provisional
Probab=28.70 E-value=4.9e+02 Score=28.64 Aligned_cols=69 Identities=17% Similarity=0.096 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy13761 326 LKTHAISQLEKANQDLDLRN-KTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKL 394 (402)
Q Consensus 326 LKaHAEEKLe~ANEEIaqvr-sk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~ 394 (402)
.|.+++.-+-.+..-+.... .-...+-..++..+...+..+..-....+...+..++|..+|+.+..++
T Consensus 530 akN~lEs~iy~~r~~l~~~~~~~~~~er~~i~~~l~~~~~wL~~~~~~~~~~~~~~~el~~~~~~i~~~~ 599 (653)
T PRK13411 530 LKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDPNISLEELKQQLEEFQQALLAIGAEV 599 (653)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554544443221 1233445666777777777766521135566677888999999998876
No 484
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.64 E-value=5.3e+02 Score=24.75 Aligned_cols=133 Identities=16% Similarity=0.123 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH----hHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHHh
Q psy13761 222 EKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELE----KEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEG 297 (402)
Q Consensus 222 e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkll----kERDQa~aDLnS~EkSFSDLhrRYEK~KevIeg 297 (402)
..+-+.-.+|+.--++|-++|..+=+. + ...+..-+..+- .=-|.-.+..+.++..|.+-++.|..+...+.+
T Consensus 28 ~~lv~k~~~L~~~~~~fak~~~~la~~-E--~~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~l~k~~k~ 104 (211)
T cd07598 28 AAYTRKTARLRDKGDELAKSINAYADT-E--NPSLKQGLKNFAECLAALQDYRQAEVERLEAKVVQPLALYGTICKHARD 104 (211)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhc-c--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777777777776654432 2 121122222211 112233456678899999999999998776665
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy13761 298 MKANEDHLRARHSELEEELKKQVNKY--DALKT-HAISQLEKANQDLDLRNKTYEMETTKLKA 357 (402)
Q Consensus 298 yKkNEE~LKk~ieey~~rvkkeeQRY--qALKa-HAEEKLe~ANEEIaqvrsk~eaE~~aLqA 357 (402)
-.+.--..+.....-...+.+..++. +..+. -|+.+|.+|..+.++..+.-..|+..+.-
T Consensus 105 ~~K~~~~ar~~~~~~~~~leklk~~~~~d~~~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~ 167 (211)
T cd07598 105 DLKNTFTARNKELKQLKQLEKLRQKNPSDRQIISQAESELQKASVDANRSTKELEEQMDNFEK 167 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44321111111111112222222211 11222 48888888888888888887777776653
No 485
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.63 E-value=97 Score=25.62 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccccc
Q psy13761 347 TYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSSC 397 (402)
Q Consensus 347 k~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeELTkICDELIsK~~~~ 397 (402)
+++.-+..|...+++.+.---+|++++..-.+=. +|.+.|...+.+++..
T Consensus 11 sfEea~~~LEeIv~~LE~~~l~Lees~~lyeeg~-~L~k~C~~~L~~ae~k 60 (80)
T PRK00977 11 SFEEALAELEEIVTRLESGDLPLEESLAAFERGV-ALARQCQKKLQQAEQR 60 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5677788889999999999999999888765554 9999999999887754
No 486
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=28.62 E-value=3.2e+02 Score=23.84 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=26.6
Q ss_pred HHHHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHH
Q psy13761 267 KEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKK 318 (402)
Q Consensus 267 RDQa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~LKk~ieey~~rvkk 318 (402)
+..+...+..+|.....|+.....+|..+..+-+-=..|+-....+.+++.+
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666655544333333444444434444333
No 487
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.36 E-value=9.9e+02 Score=27.74 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 304 HLRARHSELEEELKKQVNKYDAL 326 (402)
Q Consensus 304 ~LKk~ieey~~rvkkeeQRYqAL 326 (402)
.+++.+.+|...+......+..+
T Consensus 782 ~~~~~i~~~~~~~~~~~~~~~~~ 804 (1042)
T TIGR00618 782 HLAAEIQFFNRLREEDTHLLKTL 804 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566655555555544443
No 488
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=28.31 E-value=4e+02 Score=23.13 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=5.8
Q ss_pred HHHHHHHHHc
Q psy13761 384 TSICDDLISK 393 (402)
Q Consensus 384 TkICDELIsK 393 (402)
.+|-|+.|.+
T Consensus 137 ~~lid~~i~~ 146 (147)
T TIGR01144 137 KDLIDKLVAE 146 (147)
T ss_pred HHHHHHHHhh
Confidence 3566666654
No 489
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=28.23 E-value=4.3e+02 Score=23.56 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHH
Q psy13761 231 YQKMLNDYENTITQCVNQRENDKKQ 255 (402)
Q Consensus 231 M~~Im~EYEktI~qlIeE~eq~k~~ 255 (402)
+.++|++-+..|..-+.+.++.+..
T Consensus 33 i~~~l~~R~~~I~~~l~~Ae~~~~e 57 (164)
T PRK14473 33 VLNLLNERTRRIEESLRDAEKVREQ 57 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666665544444
No 490
>PRK06798 fliD flagellar capping protein; Validated
Probab=28.18 E-value=2.3e+02 Score=29.90 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=18.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHH
Q psy13761 339 QDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARK 376 (402)
Q Consensus 339 EEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQK 376 (402)
..+++.+..+...-.+|...+.+++.+...|...+.||
T Consensus 400 ~rl~~~e~~l~~qf~ale~~ms~lnsQ~s~l~~~~~~~ 437 (440)
T PRK06798 400 TQNKQKQDNIVDKYQKLESTLAALDSQLKTIKAMTKQK 437 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33334444444445555555555555555554444443
No 491
>PF08598 Sds3: Sds3-like; InterPro: IPR013907 Repression of gene transcription is mediated by histone deacetylases containing repressor-co-repressor complexes, which are recruited to promoters of target genes via interactions with sequence-specific transcription factors. The co-repressor complex contains a core of at least seven proteins []. This entry represents the conserved region found in Sds3, Dep1 and BRMS1-homologue p40 proteins. ; PDB: 2XUS_A.
Probab=28.04 E-value=1.2e+02 Score=27.65 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=21.5
Q ss_pred HHHHHHHhHHHhhHHHHHHHHhhHHHHHhhHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 269 EVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHL-RARHSELEEELKKQVNKYDALKTHA 330 (402)
Q Consensus 269 Qa~aDLnS~EkSFSDLhrRYEK~KevIegyKkNEE~L-Kk~ieey~~rvkkeeQRYqALKaHA 330 (402)
++..+|..||..|+.+=.++ .++-+..+..-.+.| .....+|...+...+++++.--..|
T Consensus 2 ~~~~~l~~le~~F~~~Rd~l--Y~e~l~~L~~el~~l~~~t~pe~l~~l~~l~~~rd~~l~~a 62 (205)
T PF08598_consen 2 EALDDLAKLEKQFAELRDQL--YRERLAQLQQELEQLQEGTHPEYLRRLQDLEERRDERLRVA 62 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCHHHH--------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999985554 233333333333333 3456677777777777666544333
No 492
>KOG2991|consensus
Probab=27.84 E-value=7e+02 Score=25.86 Aligned_cols=84 Identities=17% Similarity=0.119 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHHHH
Q psy13761 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIE 296 (402)
Q Consensus 217 ~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~KevIe 296 (402)
+-++|.-|+.+|.++++... ++-|+++-.+..-+|.. =..+-.+|+.|+.-.+.+-+-++
T Consensus 215 LMAKCR~L~qENeElG~q~s--~Gria~Le~eLAmQKs~------------------seElkssq~eL~dfm~eLdedVE 274 (330)
T KOG2991|consen 215 LMAKCRTLQQENEELGHQAS--EGRIAELEIELAMQKSQ------------------SEELKSSQEELYDFMEELDEDVE 274 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhh--cccHHHHHHHHHHHHhh------------------HHHHHHhHHHHHHHHHHHHHHHh
Confidence 44556666666666666544 34455554443333222 12244677777777777777777
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHH
Q psy13761 297 GMKANEDHLRARHSELEEELKKQV 320 (402)
Q Consensus 297 gyKkNEE~LKk~ieey~~rvkkee 320 (402)
|...--=.|...+++-.++|+...
T Consensus 275 gmqsTiliLQq~Lketr~~Iq~l~ 298 (330)
T KOG2991|consen 275 GMQSTILILQQKLKETRKEIQRLK 298 (330)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Confidence 765555455555555554444443
No 493
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.74 E-value=8e+02 Score=26.48 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHH
Q psy13761 332 SQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAEL 383 (402)
Q Consensus 332 EKLe~ANEEIaqvrsk~eaE~~aLqA~LKKeEmkv~SLEesLEQKtKENeEL 383 (402)
.+-+.++++|.+...+-...+..|.+..+..--++..++..+.+.+.+..++
T Consensus 50 ~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 50 AERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTL 101 (429)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455566667644444333566777777777777777777777666655443
No 494
>PRK14156 heat shock protein GrpE; Provisional
Probab=27.68 E-value=2.8e+02 Score=26.28 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy13761 302 EDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTK 354 (402)
Q Consensus 302 EE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqvrsk~eaE~~a 354 (402)
|..+...++.+.+.+..+..+|..+.|..+.--.++..|+++.+..+.+.++.
T Consensus 29 ~~~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~ 81 (177)
T PRK14156 29 ETPEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAK 81 (177)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.67 E-value=2.2e+02 Score=23.72 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 286 LKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLR 344 (402)
Q Consensus 286 rRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~ANEEIaqv 344 (402)
..+.++.+++..+-..+-.|-..++.|.+-+ .|-.++.++|+.|-.+|..+
T Consensus 11 eal~~LEeIV~~LE~~~l~Lees~~lyeeG~--------~L~k~C~~~L~~ae~kI~~l 61 (80)
T PRK14067 11 QQLARLQEIVDALEGGDLPLEESVALYKEGL--------GLARACREQLAKARNEIRLF 61 (80)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
No 496
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=27.43 E-value=96 Score=26.95 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHhhHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHHHccccccc
Q psy13761 345 NKTYEMETTKLKAMLKKSEMQITS------LQESLARKTEENAELTSICDDLISKLSSCVK 399 (402)
Q Consensus 345 rsk~eaE~~aLqA~LKKeEmkv~S------LEesLEQKtKENeELTkICDELIsK~~~~~~ 399 (402)
.++..+++.+|+.++|..+.+-.- |..=|-...=.++||.+|++++......+..
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~eieI~d~eL~~~FeeIa~RFrk~~~ 64 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLGEIEISDAELQAAFEEIAARFRKGKK 64 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHHHhcccc
No 497
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.40 E-value=2.4e+02 Score=24.26 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 285 HLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQL 334 (402)
Q Consensus 285 hrRYEK~KevIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKL 334 (402)
+.+|.+++.-+...+..-+.++...+.+..+|..++.....+..+|-++|
T Consensus 26 ~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~L 75 (105)
T PRK00888 26 ILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNEL 75 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHc
No 498
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=27.19 E-value=7.1e+02 Score=25.69 Aligned_cols=122 Identities=18% Similarity=0.225 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHH
Q psy13761 214 SDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKV 293 (402)
Q Consensus 214 ~~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~Ke 293 (402)
+.+....+..+..+..+++.--.+|-.-|..+..+. +.+..++.++..+.|.++...+-|+.-|-++-.+-.-+.+
T Consensus 153 ~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~ea----qe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~e 228 (294)
T COG1340 153 ALEENEKLKELKAEIDELKKKAREIHEKIQELANEA----QEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHE 228 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q psy13761 294 IIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQ--LEKANQDLDLRNK 346 (402)
Q Consensus 294 vIegyKkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEK--Le~ANEEIaqvrs 346 (402)
-+-. +++.+.+|...|.....+--+.+..+... -++|-+-+.....
T Consensus 229 e~~~-------~~~elre~~k~ik~l~~~~~~~~~~~~~ee~kera~ei~EKfk~ 276 (294)
T COG1340 229 EFRN-------LQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFKR 276 (294)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 499
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=27.16 E-value=7.1e+02 Score=25.69 Aligned_cols=164 Identities=16% Similarity=0.225 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHhhHHH
Q psy13761 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVI 294 (402)
Q Consensus 215 ~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK~Kev 294 (402)
+.+...+..+...--+++.=+-++-.-+..+.++ +.....+++++..+|+...+.++- ||+.|.++++.
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~----rdeineev~elK~kR~ein~kl~e-------L~~~~~~l~e~ 98 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREE----RDEINEEVQELKEKRDEINAKLQE-------LRKEYRELKEK 98 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q ss_pred HHhh----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHhhHH
Q psy13761 295 IEGM----------KANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKAN--QDLDLRNKTYEMETTKLKAMLKKS 362 (402)
Q Consensus 295 Iegy----------KkNEE~LKk~ieey~~rvkkeeQRYqALKaHAEEKLe~AN--EEIaqvrsk~eaE~~aLqA~LKKe 362 (402)
+.+| .+-.+.|-...+...-....+.+.-+.++. -..+|+.|- .+...-...-.+++.+++...+-.
T Consensus 99 ~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~-L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~ 177 (294)
T COG1340 99 RNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKE-LRKELEDAKKALEENEKLKELKAEIDELKKKAREI 177 (294)
T ss_pred hhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13761 363 EMQITSLQESLARKTEENAELTSICDDL 390 (402)
Q Consensus 363 Emkv~SLEesLEQKtKENeELTkICDEL 390 (402)
-.+|+-|-.+.+..-.+.-++..=.|++
T Consensus 178 ~eki~~la~eaqe~he~m~k~~~~~De~ 205 (294)
T COG1340 178 HEKIQELANEAQEYHEEMIKLFEEADEL 205 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=27.16 E-value=7.2e+02 Score=25.75 Aligned_cols=90 Identities=14% Similarity=0.202 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHhHHHhhHHHHHHHHh----
Q psy13761 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYER---- 290 (402)
Q Consensus 215 ~~~~~~~e~l~~~n~eM~~Im~EYEktI~qlIeE~eq~k~~~~~eiqkllkERDQa~aDLnS~EkSFSDLhrRYEK---- 290 (402)
+|+.....+........+.+++.-.+-++=++.+...-... +-.=.|..... +...|+.-+.+.
T Consensus 225 kw~~~~~~k~~~al~~~~~~l~~aakGtyI~~~DldTIsrL-------V~RL~deIE~~-----~~~v~fave~~~d~~~ 292 (336)
T PF05055_consen 225 KWCGSLWKKYEEALKKQKEQLDAAAKGTYILIKDLDTISRL-------VDRLEDEIEHM-----KALVDFAVERGEDEEA 292 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhhHHHH-------HHHHHHHHHHH-----HHHHHHHHhcCccchh
Q ss_pred hHHHHHhhHhhHHHHHHHHHHHHHHH
Q psy13761 291 SKVIIEGMKANEDHLRARHSELEEEL 316 (402)
Q Consensus 291 ~KevIegyKkNEE~LKk~ieey~~rv 316 (402)
+|+|+..+++|.+.+.+.++|+.+-+
T Consensus 293 vk~vv~el~k~~~~f~~qleELeehv 318 (336)
T PF05055_consen 293 VKEVVKELKKNVESFTEQLEELEEHV 318 (336)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Done!