RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13761
(402 letters)
>gnl|CDD|218380 pfam05010, TACC, Transforming acidic coiled-coil-containing protein
(TACC). This family contains the proteins TACC 1, 2 and
3 the genes for which are found concentrated in the
centrosomes of eukaryotic and may play a conserved role
in organising centrosomal microtubules. The human TACC
proteins have been linked to cancer and TACC2 has been
identified as a possible tumour suppressor (AZU-1). The
functional homologue (Alp7) in Schizosaccharomyces pombe
has been shown to be required for organisation of
bipolar spindles.
Length = 207
Score = 107 bits (270), Expect = 2e-27
Identities = 69/186 (37%), Positives = 114/186 (61%)
Query: 209 ERNSTSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKE 268
S+E K EKL+ EN K+++++E TI Q + + + K+ ++ +E+ EK+
Sbjct: 20 SSELESEELKKKYEKLRSENLEMGKIVDEFEKTIAQMIEESQKQKELSKRELQEVLAEKD 79
Query: 269 EVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKT 328
+ L + E +F+D+ +YE+ K +IEG K NE+ L+ E + LKK+ +Y ALK
Sbjct: 80 QAYADLNSLETSFSDLFKRYEKYKEVIEGYKKNEETLKKCAQEYLDRLKKEEQRYQALKA 139
Query: 329 HAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICD 388
HA +LE AN+++ + ET L+A L+K +M++ SL+E+L +K +EN ELT ICD
Sbjct: 140 HAEEKLEIANEEIAQVRSKAKAETAALQASLRKEQMKVQSLEETLEQKNKENEELTKICD 199
Query: 389 DLISKL 394
+LISK+
Sbjct: 200 ELISKM 205
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 39.7 bits (93), Expect = 0.003
Identities = 30/135 (22%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 261 KELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQV 320
+ELE++ EE++ + E A ++ + E + +E ++ + L + S L ++L +
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739
Query: 321 NKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEEN 380
+ + L I+QL K +L+ + E + + L ++E +I L+ + + EE
Sbjct: 740 AEVEQL-EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798
Query: 381 AELTSICDDLISKLS 395
L D+L ++L+
Sbjct: 799 KALREALDELRAELT 813
Score = 38.9 bits (91), Expect = 0.004
Identities = 33/167 (19%), Positives = 80/167 (47%), Gaps = 6/167 (3%)
Query: 220 LIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKEL---EKEKEEVQLHLRN 276
I +L+++ ++ L + E + + Q E + + ++ +EL E++ EE++ L +
Sbjct: 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES 355
Query: 277 SEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEK 336
E ++ + E + +E ++ + LR++ ++LE ++ N+ + L+ + +LE
Sbjct: 356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR-LERLED 414
Query: 337 ANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAEL 383
+ L + + +A LK+ + ++ L+E L EE L
Sbjct: 415 RRERLQQEIEELLKK--LEEAELKELQAELEELEEELEELQEELERL 459
Score = 38.1 bits (89), Expect = 0.008
Identities = 29/166 (17%), Positives = 66/166 (39%), Gaps = 1/166 (0%)
Query: 221 IEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIA 280
I +L+K A +K L + E + Q + E +Q +K+L + + EV+
Sbjct: 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
Query: 281 FNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQD 340
++ + E +E + A EEL+ Q+ + L++ +
Sbjct: 753 SKEL-TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
Query: 341 LDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSI 386
L L N+ +L+++ ++ L++ + E + ++ S+
Sbjct: 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857
Score = 35.4 bits (82), Expect = 0.056
Identities = 30/187 (16%), Positives = 72/187 (38%), Gaps = 13/187 (6%)
Query: 209 ERNSTSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKE 268
+E + ++++ A +++ + + R + +E +E
Sbjct: 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELR----AELTLLNEEAANLRE 824
Query: 269 EVQLHLRNS---EIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDA 325
++ R E D+ + E IE + A + L ELE EL+ +N+ +
Sbjct: 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS 884
Query: 326 LKTH------AISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEE 379
L+ + +L + ++L+ + E +L+ L + E+++ L+ + E
Sbjct: 885 LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
Query: 380 NAELTSI 386
+E S+
Sbjct: 945 LSEEYSL 951
Score = 35.0 bits (81), Expect = 0.075
Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 19/171 (11%)
Query: 248 QRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDH--- 304
Q ++ ++Q EK ++ E + E +L L + ++ + E + ++ +A E+
Sbjct: 201 QLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELK--EAEEELEEL 258
Query: 305 -------------LRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEME 351
LR SELEEE+++ + AL IS+LE+ Q L R E +
Sbjct: 259 TAELQELEEKLEELRLEVSELEEEIEELQKELYALAN-EISRLEQQKQILRERLANLERQ 317
Query: 352 TTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSSCVKLKF 402
+L+A L++ E ++ L E LA E+ EL + L ++L
Sbjct: 318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368
Score = 32.0 bits (73), Expect = 0.70
Identities = 38/175 (21%), Positives = 85/175 (48%), Gaps = 19/175 (10%)
Query: 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQ--L 272
+E + +E+L++E ++ L + + + E ++ ELE+E EE+Q L
Sbjct: 235 EELREELEELQEELKEAEEELEELTAEL----QELEEKLEELRLEVSELEEEIEELQKEL 290
Query: 273 HLRNSEIA------------FNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQV 320
+ +EI+ ++ + E + +E +++ D L +ELEE+L++
Sbjct: 291 YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
Query: 321 NKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLAR 375
+ ++L+ + +LE ++L+ R + E + L++ + + E+QI SL + R
Sbjct: 351 EELESLEA-ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404
>gnl|CDD|182597 PRK10626, PRK10626, hypothetical protein; Provisional.
Length = 239
Score = 36.6 bits (85), Expect = 0.013
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 25/105 (23%)
Query: 248 QRENDKKQFEKYKKELEKE----KEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANED 303
QR+ Q + Y+ L ++ E + L + +A + KVI++ + + +
Sbjct: 69 QRQ----QAKDYQAALRQDLPWIDEGAKSRLEKARVALD---------KVIVQELGESSN 115
Query: 304 HLRARHSELEEELKKQVNKY-----DALKTH--AISQLEKANQDL 341
+R R ++L+ +LK+Q+N+ D L H AI Q+E Q L
Sbjct: 116 -VRNRLTKLDAQLKQQMNRIIEHRSDGLTFHHQAIDQVEADGQQL 159
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 36.1 bits (84), Expect = 0.021
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 294 IIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETT 353
+EG+K + L L K ++ DAL+ + QL++ +L E
Sbjct: 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALE-EELRQLKQLEDEL---EDCDPTELD 207
Query: 354 KLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSSC 397
+ K LKK +I + L EE EL S +DL +K S
Sbjct: 208 RAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSEL 251
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 36.2 bits (84), Expect = 0.036
Identities = 33/178 (18%), Positives = 82/178 (46%), Gaps = 10/178 (5%)
Query: 209 ERNSTSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKE 268
+ +E ++ + L++E ++ L + E + + E+ +++ E+ ++E+E+ +E
Sbjct: 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835
Query: 269 EVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALK- 327
E + E +++ + E + +E +K + L A ELE+ELK+ + + L+
Sbjct: 836 E----IEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEE 891
Query: 328 -----THAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEEN 380
+++L++ + L R + E + +L+ L + E ++ E E
Sbjct: 892 ELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELER 949
Score = 36.2 bits (84), Expect = 0.037
Identities = 32/165 (19%), Positives = 78/165 (47%), Gaps = 4/165 (2%)
Query: 209 ERNSTSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYK---KELEK 265
E +E ++ ++ L++E S ++ E I + + E +++ ++ + +ELEK
Sbjct: 797 ELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEK 856
Query: 266 EKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDA 325
E EE++ L E ++ + + + E ++ L + +EL+EE++K + +
Sbjct: 857 ELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916
Query: 326 LKTHAISQLEKANQDLDLRNKTYEME-TTKLKAMLKKSEMQITSL 369
L+ + + + + YE T+L+ +++ E +I +L
Sbjct: 917 LEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEAL 961
Score = 35.1 bits (81), Expect = 0.085
Identities = 29/158 (18%), Positives = 64/158 (40%), Gaps = 6/158 (3%)
Query: 246 VNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHL 305
+ + E ++ E+ K L+ E ++ L ++ + E K + ++ + L
Sbjct: 676 LAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQL 735
Query: 306 RARHSELEEELKKQVNKYDALKT------HAISQLEKANQDLDLRNKTYEMETTKLKAML 359
++R ELEEEL++ + + L+ + LE+A L + E + L+ L
Sbjct: 736 QSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEEL 795
Query: 360 KKSEMQITSLQESLARKTEENAELTSICDDLISKLSSC 397
++ E ++ + L E L + L ++
Sbjct: 796 EELEEELEEAERRLDALERELESLEQRRERLEQEIEEL 833
Score = 34.3 bits (79), Expect = 0.13
Identities = 36/186 (19%), Positives = 84/186 (45%), Gaps = 18/186 (9%)
Query: 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHL 274
+E + +E+L++E S ++ L + I ++ E+ ++ L++E EE++ L
Sbjct: 754 EELQERLEELEEELESLEEALAKLKEEI-----------EELEEKRQALQEELEELEEEL 802
Query: 275 RNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEE---ELKKQVNKYDALKTHAI 331
+E + + + E + E ++ + L ELEE EL++++ + +
Sbjct: 803 EEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELK 862
Query: 332 SQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLI 391
+LE+ + + + +L+ ++ E ++ L+ LA EE +L ++L
Sbjct: 863 EELEELEAEKEELEDELK----ELEEEKEELEEELRELESELAELKEEIEKLRERLEELE 918
Query: 392 SKLSSC 397
+KL
Sbjct: 919 AKLERL 924
Score = 34.3 bits (79), Expect = 0.13
Identities = 34/146 (23%), Positives = 70/146 (47%), Gaps = 15/146 (10%)
Query: 249 RENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRAR 308
++ + K+ E+ ELE + E+++ L++ + + E + +E ++ + L+
Sbjct: 665 QKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRE 724
Query: 309 HSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITS 368
+ LEEEL+ QL+ ++L+ + E E +L+ L++ E ++ S
Sbjct: 725 LAALEEELE---------------QLQSRLEELEEELEELEEELEELQERLEELEEELES 769
Query: 369 LQESLARKTEENAELTSICDDLISKL 394
L+E+LA+ EE EL L +L
Sbjct: 770 LEEALAKLKEEIEELEEKRQALQEEL 795
Score = 32.0 bits (73), Expect = 0.70
Identities = 32/180 (17%), Positives = 76/180 (42%), Gaps = 19/180 (10%)
Query: 209 ERNSTSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKE 268
+ ++ L+E+L++ + ++ L + E + + N+ E K++ E ++ LE+ E
Sbjct: 359 AKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSE 418
Query: 269 EVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKT 328
++ ++ ++A + L+ EL EEL++ + + L+
Sbjct: 419 RLEDLKEE------------------LKELEAELEELQTELEELNEELEELEEQLEELR- 459
Query: 329 HAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICD 388
+ +LE+ +L + E E + L+A L + E + + Q A + L +
Sbjct: 460 DRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYG 519
Score = 30.5 bits (69), Expect = 2.2
Identities = 28/140 (20%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHL 274
+E +K +E+LK+E + + E+ + + ++E +++ + + EL + KEE++
Sbjct: 852 EELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIE--- 908
Query: 275 RNSEIAFNDVHLKYERSKVIIEGM--KANEDHLRARHSELEEELKKQVNKYDALKT---H 329
++ K ER +V + + + E++ +ELE E+++ + +AL
Sbjct: 909 -KLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLR 967
Query: 330 AISQLEKANQDLDLRNKTYE 349
AI + E+ + + E
Sbjct: 968 AIEEYEEVEERYEELKSQRE 987
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 35.4 bits (82), Expect = 0.059
Identities = 37/192 (19%), Positives = 75/192 (39%), Gaps = 16/192 (8%)
Query: 221 IEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKE---LEKEKEEVQLHLRNS 277
I +L+ E AS ++ + + E + + + + +K E LE+E EE +
Sbjct: 296 IGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL 355
Query: 278 EIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTH-------- 329
+ ++ + E + +E + R + E+L+K + + LK
Sbjct: 356 TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415
Query: 330 --AISQLEKANQDL-DLRNKTYEMETTK--LKAMLKKSEMQITSLQESLARKTEENAELT 384
+L N + + K E+E K +KK E ++ L L++ +E +L
Sbjct: 416 QRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK 475
Query: 385 SICDDLISKLSS 396
D + +LS
Sbjct: 476 EEYDRVEKELSK 487
Score = 33.1 bits (76), Expect = 0.28
Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 11/181 (6%)
Query: 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEK------- 267
EK++ +E ++ A + ++ I + + E ++K+ +K +E + K
Sbjct: 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370
Query: 268 ---EEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYD 324
EEV + D K E+ K I +K D L+ L EEL
Sbjct: 371 AELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIA 430
Query: 325 ALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELT 384
++ I++LE+ +D L K E + +L A L K E ++ L+E R +E ++L
Sbjct: 431 GIEA-KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489
Query: 385 S 385
Sbjct: 490 R 490
Score = 32.7 bits (75), Expect = 0.37
Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 204 NLISPERNSTSDEKDKLIEKL------KKENASYQKMLNDYENTITQCVNQRENDKKQFE 257
N ++ E+ E +L E+ K + LN + + + + + E + E
Sbjct: 822 NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE 881
Query: 258 KYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELK 317
+L+KE++E++ LR E ++ + E+ + + +KA + L SE+E+
Sbjct: 882 SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKG 941
Score = 32.3 bits (74), Expect = 0.56
Identities = 33/194 (17%), Positives = 79/194 (40%), Gaps = 9/194 (4%)
Query: 208 PERNSTSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEK 267
E +E ++L+E+L N + + + + + + + + E + E+ E E+E
Sbjct: 261 SELEKRLEEIEQLLEEL---NKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKEREL 317
Query: 268 EEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALK 327
E+ + L E + + + E + IE + D L ++EL+EEL+ + + +
Sbjct: 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVD 377
Query: 328 THA------ISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENA 381
+ + + L + E +L+ L++ ++ L ++A +
Sbjct: 378 KEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN 437
Query: 382 ELTSICDDLISKLS 395
EL +D ++
Sbjct: 438 ELEEEKEDKALEIK 451
Score = 30.8 bits (70), Expect = 1.4
Identities = 41/187 (21%), Positives = 85/187 (45%), Gaps = 14/187 (7%)
Query: 215 DEKDKLIEKLKKENA------SYQKMLNDYENT-ITQCVNQRENDKKQFEKYKKELEKEK 267
DEK + +E+L++E + K +YE + + E K+ E+ LE+E
Sbjct: 194 DEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEEL 253
Query: 268 EEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALK 327
E++ + SE+ ++ ++ + E+ ++ E L+ ++ +
Sbjct: 254 EKLTEEI--SELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGE-LEAEIASLER-- 308
Query: 328 THAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSIC 387
+I++ E+ +D + R E E KL A +++ E +I ++ + TEE AEL
Sbjct: 309 --SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL 366
Query: 388 DDLISKL 394
+DL ++L
Sbjct: 367 EDLRAEL 373
Score = 30.4 bits (69), Expect = 1.9
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 16/161 (9%)
Query: 216 EKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLR 275
+DKL E+ + + + + E + R+ + + Y+++LEK K E+ R
Sbjct: 351 RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD----ELKDYREKLEKLKREINELKR 406
Query: 276 NSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLE 335
+ ++ E + + A + A+ +ELEEE + + + + +LE
Sbjct: 407 ELDRLQEELQRLSEE----LADLNAAIAGIEAKINELEEEKEDKALEIKKQEW----KLE 458
Query: 336 KANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARK 376
+ DL YE E LK + E +++ LQ LA
Sbjct: 459 QLAADLS----KYEQELYDLKEEYDRVEKELSKLQRELAEA 495
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 33.4 bits (77), Expect = 0.13
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 301 NEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAML- 359
+ R R EL++EL + + L+ +++L++ NQ+L T E E +L+ L
Sbjct: 60 DTPSARERLPELQQELAELQEELAELQE-QLAELQQENQELKQELSTLEAELERLQKELA 118
Query: 360 --KKSEMQITSLQESLARKTEENAELTSICDDLISKL 394
K+ L E EE AEL + L ++
Sbjct: 119 RIKQLSANAIELDEENRELREELAELKQENEALEAEN 155
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 34.0 bits (79), Expect = 0.13
Identities = 17/84 (20%), Positives = 37/84 (44%)
Query: 253 KKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSEL 312
K++ K + E EKE E + L+ E +R ++E + + +
Sbjct: 63 KEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQK 122
Query: 313 EEELKKQVNKYDALKTHAISQLEK 336
++EL+K+ + + L + +LE+
Sbjct: 123 QQELEKKEEELEELIEEQLQELER 146
Score = 29.0 bits (66), Expect = 5.6
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHL 274
+E KL + +KE + L E + Q + + EK ++ELEK+++E++
Sbjct: 64 EEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQ 123
Query: 275 RNSEIAFNDVHLKYERSKVIIE---GMKANEDHLRARH---SELEEELKKQVNKY 323
+ E ++ E +E G+ A E A+ ++EEE + +
Sbjct: 124 QELEKKEEELEELIEEQLQELERISGLTAEE----AKEILLEKVEEEARHEAAVL 174
>gnl|CDD|219737 pfam08172, CASP_C, CASP C terminal. This domain is the C-terminal
region of the CASP family of proteins. It is a Golgi
membrane protein which is thought to have a role in
vesicle transport.
Length = 245
Score = 33.1 bits (76), Expect = 0.20
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 303 DHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDL 341
D R R++ELEEEL+KQ +L+ + L+ N L
Sbjct: 89 DRFRKRNTELEEELRKQNQTISSLRR-ELESLKADNIKL 126
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 33.1 bits (76), Expect = 0.24
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 295 IEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTK 354
+EGMK +E+ L + + K K ALK I+ L + +L+L + E K
Sbjct: 156 LEGMKRDEELLNKDLNLINSIKPKLRKKLQALK-EEIASLRQLADELNLCDPL---ELEK 211
Query: 355 LKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSSC 397
+ L+ ++I+ ++ L +E ELT + L +K S
Sbjct: 212 ARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSEL 254
>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase
is a bifunctional enzyme that catalyses the last two
steps in the biosynthesis of L-tryptophan via its alpha
and beta reactions. In the alpha reaction, indole
3-glycerol phosphate is cleaved reversibly to
glyceraldehyde 3-phosphate and indole at the active site
of the alpha subunit. In the beta reaction, indole
undergoes a PLP-dependent reaction with L-serine to form
L-tryptophan at the active site of the beta subunit.
Members of this CD, Trp-synth_B, are found in all three
major phylogenetic divisions.
Length = 365
Score = 32.9 bits (76), Expect = 0.29
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 52 LKEEKELAEDTKEVVNLSGHSDRDL 76
+K K+L ++ VVNLSG D+DL
Sbjct: 338 IKLAKKLGKEKVIVVNLSGRGDKDL 362
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is
involved in determining the site of synaptic vesicle
fusion. The C-terminus is a PDZ-binding motif that binds
directly to RIM (a small G protein Rab-3A effector). The
family also contains four coiled-coil domains.
Length = 774
Score = 33.1 bits (75), Expect = 0.30
Identities = 40/178 (22%), Positives = 76/178 (42%), Gaps = 14/178 (7%)
Query: 223 KLKKENASYQKMLNDYENTITQCVNQRENDKK----QFEKYKKELEKEKEEVQLHLRNSE 278
+K L + E I + QR+ D++ +FE YKKE E KEEVQ N +
Sbjct: 430 NTDTALEKLEKALAEKERIIERLKEQRDRDERYEQEEFETYKKEFEDLKEEVQ----NLQ 485
Query: 279 IAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKA- 337
+ ++ L+ E K + + +N+ R+ EL+K K++ L +L++
Sbjct: 486 LKLSERELQLELLKEEVSKLASNQLKQRSDLERAHIELEKIREKHEKL----EKELKRLR 541
Query: 338 -NQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKL 394
N + R + T++ +A + ++ L + L + +E + L +L
Sbjct: 542 ANPESADRGSAVDAGTSRSRADSAGARNEVDRLLDRLEKAEQERDDTEMEAGRLAKEL 599
Score = 31.5 bits (71), Expect = 0.93
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 12/145 (8%)
Query: 246 VNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHL 305
+ + E ++ E L KE E+ Q HL + +++ER + + E+
Sbjct: 578 LEKAEQERDDTEMEAGRLAKELEKAQRHLTKQQEKTEATRIEFER-----KSAELLEEAE 632
Query: 306 RARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKS--- 362
R SE EEE +Q + + A + +E Q L+ K E +L A L+KS
Sbjct: 633 RLEKSEAEEETLRQSTQIGHAQAAAHNHIEHHVQKLESDLKQLRAEREQLVAQLEKSQQS 692
Query: 363 ----EMQITSLQESLARKTEENAEL 383
+ ++ + + + EEN EL
Sbjct: 693 LMEFQQELNAAEAERRKHLEENREL 717
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 33.1 bits (76), Expect = 0.30
Identities = 36/196 (18%), Positives = 70/196 (35%), Gaps = 18/196 (9%)
Query: 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHL 274
K ++L +E + + + + + + V E+ K K K +++
Sbjct: 216 ARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQ-- 273
Query: 275 RNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQL 334
F V YE+ V + + R ++++++LK+ + + L T
Sbjct: 274 ------FQKVIKMYEKGGVCPTCTQQISEG-PDRITKIKDKLKELQHSLEKLDTAIDELE 326
Query: 335 EKANQDLDLRNKTYEMET---------TKLKAMLKKSEMQITSLQESLARKTEENAELTS 385
E ++ + K E++ L KK + I LQ EE A+L
Sbjct: 327 EIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD 386
Query: 386 ICDDLISKLSSCVKLK 401
D ++ S VK K
Sbjct: 387 ELDKIVKTKSELVKEK 402
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 32.6 bits (75), Expect = 0.41
Identities = 43/203 (21%), Positives = 81/203 (39%), Gaps = 22/203 (10%)
Query: 208 PERNSTSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEK 267
+R E+ E+ K+ + L E V+ ++D +QFE+ K++ + +
Sbjct: 893 ADRVEEIREQLDEAEEAKRFVQQHGNALAQLE----PIVSVLQSDPEQFEQLKQDYQ-QA 947
Query: 268 EEVQLHLRNSEIAFNDV-----HLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNK 322
++ Q + A +V H YE + ++ + LR R + E+E +
Sbjct: 948 QQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRA--- 1004
Query: 323 YDALKTHAISQLEKANQ---DLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLA--RKT 377
+ L+ +QL + NQ L +LK L+ + S E A R+
Sbjct: 1005 REQLRQAQ-AQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRD 1063
Query: 378 EENAELT---SICDDLISKLSSC 397
E +A L+ S + L +L+ C
Sbjct: 1064 ELHARLSANRSRRNQLEKQLTFC 1086
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 32.7 bits (75), Expect = 0.41
Identities = 36/180 (20%), Positives = 74/180 (41%), Gaps = 18/180 (10%)
Query: 214 SDEKDKLIEKLKKENASYQKMLNDYENTITQCVN---QRENDKKQFEKYKKELEKEKEEV 270
+E +LIE+L++ Y+ + + ++ + K E+ K LE +E +
Sbjct: 277 DEEYQELIEQLEELIDKYESHIEKALEELESILDTEKENSEFKLDVEELKALLEALEEIL 336
Query: 271 QLHLRNSEIAFNDVH--LKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKT 328
+ +L+ E D ++ E +IE + D + +EL E ++++ K
Sbjct: 337 EKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAI----NELIREHNEKIDNLKKEKN 392
Query: 329 HAISQLE-----KANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAEL 383
A +L + +D+D Y+ E L+ + E +I L+ + +E EL
Sbjct: 393 KAKKKLWLHLVAELKEDID----AYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKEL 448
Score = 28.4 bits (64), Expect = 9.3
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 302 EDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKK 361
E H + EL E+L++ ++KY++ A+ +LE ++ + +LKA+L+
Sbjct: 273 EAHFDEEYQELIEQLEELIDKYESHIEKALEELESILDTEKENSEFKL-DVEELKALLEA 331
Query: 362 SEMQITSLQESLARKTEE---NAELTSICDDLISKLSSCVK 399
E + + L K ++ + EL SI DLI ++ +
Sbjct: 332 LEEILEKNLQKLEEKLKDPSTSIELESI-TDLIESINDIID 371
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 32.0 bits (73), Expect = 0.64
Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 261 KELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQV 320
KELE E EVQL R + D+ + ++ + ++ L LE +++
Sbjct: 160 KELEAEIREVQLKTR----TWKDLVKALDEAEEELANLRKELRQLEKEKQRLERL--RRL 213
Query: 321 NKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEEN 380
A + QL + +DL E + +A L+ + + L E L E
Sbjct: 214 LPLLAERKALEQQLAALGEVIDLPPDAVE-RYEEARAELRAARRNLELLTERLEALQAEL 272
Query: 381 AELTSICDDLISK 393
E+ S+ ++L+++
Sbjct: 273 DEI-SLDEELLAQ 284
>gnl|CDD|193205 pfam12729, 4HB_MCP_1, Four helix bundle sensory module for signal
transduction. This family is a four helix bundle that
operates as a ubiquitous sensory module in prokaryotic
signal-transduction. The 4HB_MCP is always found between
two predicted transmembrane helices indicating that it
detects only extracellular signals. In many cases the
domain is associated with a cytoplasmic HAMP domain
suggesting that most proteins carrying the bundle might
share the mechanism of transmembrane signalling which is
well-characterized in E coli chemoreceptors.
Length = 181
Score = 30.7 bits (70), Expect = 1.0
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 211 NSTSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEK 265
+ E+D+L++ +++ A K+L YE TI E +KK F ++K++L+
Sbjct: 71 TTDPAERDELLKDIEELRAEIDKLLKKYEKTILT-----EEEKKLFNEFKEQLKA 120
>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding. This family
is found in mammals where it is localised at cell-cell
adherens junctions, and in Sch. pombe and other fungi
where it anchors spindle-pole bodies to spindle
microtubules. It is a coiled-coil structure, and in
pombe, it is required for anchoring the minus end of
spindle microtubules to the centrosome equivalent, the
spindle-pole body. The name ADIP derives from the family
being composed of Afadin- and alpha -Actinin-Binding
Proteins Localised at Cell-Cell Adherens Junctions.
Length = 149
Score = 30.0 bits (68), Expect = 1.1
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 305 LRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEM 364
R R E E L++ + K I +L+ + L + + E E L+A ++ E
Sbjct: 44 QRDRDLEFRESLEETLRK----LEAEIERLQNTIERLKTQLEDLERELALLQAKERQLEK 99
Query: 365 QITSLQESLARKTEENAELTSICDD 389
++ +L++ L + EE L +I
Sbjct: 100 KLKTLEQKLKNEKEEVQRLKNIIQQ 124
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 30.8 bits (70), Expect = 1.4
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 17/114 (14%)
Query: 305 LRARHSELEEELKKQVNKYDALKTHA-----------------ISQLEKANQDLDLRNKT 347
LR +H + EL +Q+ + K A + Q+ KA + + + K
Sbjct: 125 LRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQLDQIAKAKLNAEKKAKQ 184
Query: 348 YEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSSCVKLK 401
E + ++L+ L + + Q+ L +R EN++LT ++ +++S+ KLK
Sbjct: 185 LESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQVSNLSKLK 238
Score = 30.4 bits (69), Expect = 2.3
Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 30/175 (17%)
Query: 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKK--QFEKYKKELEKEKEEVQL 272
+E +E L++EN + Q ++D + + E + + EK ++ LE EK+E+Q
Sbjct: 422 EELKDQVEALRRENKNLQDEIHDLTDQL------GEGGRNVHELEKARRRLEAEKDELQA 475
Query: 273 HLRNSEIAFNDVHLKYERSKVIIEGMKAN-EDHLRARHSELEEELKKQVNKYDALKTHAI 331
L +E A K R++V + +++ E L + E E K ++L+
Sbjct: 476 ALEEAEAALELEESKVLRAQVELSQIRSEIERRLAEKEEEFENTRKNHQRAIESLQA--- 532
Query: 332 SQLEKANQDLDLRNKTYEMET---TKLKAMLKKSEMQITSLQESLARKTEENAEL 383
T E E + + KK E I L+ +L + NAE
Sbjct: 533 ---------------TLEAEAKGKAEASRLKKKLEGDINELEIALDHANKANAEA 572
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 29.9 bits (68), Expect = 1.4
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 18/79 (22%)
Query: 202 TANLISPERNSTSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKK 261
A+L+ E + E I + KKE A Y+ + K+ E K
Sbjct: 57 AADLLELEAAAPRAELQAKIARYKKEKARYRS------------------EAKELEAKAK 98
Query: 262 ELEKEKEEVQLHLRNSEIA 280
E E E + +A
Sbjct: 99 EAEAESDHALHQHHRFALA 117
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding. This
family is the highly conserved central region of a
number of metazoan proteins referred to as growth-arrest
proteins. In mouse, Gas8 is predominantly a testicular
protein, whose expression is developmentally regulated
during puberty and spermatogenesis. In humans, it is
absent in infertile males who lack the ability to
generate gametes. The localisation of Gas8 in the
motility apparatus of post-meiotic gametocytes and
mature spermatozoa, together with the detection of Gas8
also in cilia at the apical surfaces of epithelial cells
lining the pulmonary bronchi and Fallopian tubes
suggests that the Gas8 protein may have a role in the
functioning of motile cellular appendages. Gas8 is a
microtubule-binding protein localised to regions of
dynein regulation in mammalian cells.
Length = 201
Score = 29.9 bits (68), Expect = 1.5
Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 11/168 (6%)
Query: 219 KLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSE 278
+LI+ LK+E A +K E + + + + K+ + K+ E+E EE++ L++ E
Sbjct: 27 ELIKSLKEEIAEMKKNEEHNE----KLMAEIAQENKRLVEPLKKAEEEVEELRKKLKDYE 82
Query: 279 IAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKAN 338
+ K ++ ++ +L+ LE+ +K + D L + ++
Sbjct: 83 KDKQS----LKNLKARLKELEKELKNLKWESEVLEQRFEKVERERDELYDKFEAAIQDVQ 138
Query: 339 QDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSI 386
Q L+N E + L L+K E Q L E LA + A L ++
Sbjct: 139 QKTGLKNLLLEQKLEALNEELEKKEAQ---LNEVLAAANLDPAALQAV 183
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 30.5 bits (70), Expect = 1.5
Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 25/160 (15%)
Query: 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRN 276
+K++EK K Y+K+ E + V R K KY K EK KEE
Sbjct: 217 PEKVLEKFKALAKQYKKLRKAQE----KKVEGRLAQHK---KYAKLREKLKEE------- 262
Query: 277 SEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEK 336
+ L ++ ++E ++ +R E EL + V + + + +
Sbjct: 263 ----LKSLRLTSKQIDELVEQLRDINKRVR----GQERELLRLVERLKMPRKDFLKLFQ- 313
Query: 337 ANQDLDLRNKTYEMETTKL-KAMLKKSEMQITSLQESLAR 375
+LD+ E+ + K L + +I LQ+ L
Sbjct: 314 -GNELDITWLEKEIASGKPWSEFLVRVYDEIKKLQQELEA 352
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 30.7 bits (69), Expect = 1.5
Identities = 59/270 (21%), Positives = 96/270 (35%), Gaps = 39/270 (14%)
Query: 138 SPVRQKPSIKSPPTQSIMEEESLNDSAKLLGTSELNESVNSLSIKENESLNGNCATSTPS 197
S KS + N S K S N SV S S+ +NES A+ + S
Sbjct: 319 SAAAGSIGSKSSKSAKHSNRNKSNSSPKSH--SSANGSVPSSSVSDNESKQK-RASKSSS 375
Query: 198 GTAHTANLISPERN-------------STSDEKDKL---IEKLKKENASYQKMLNDYENT 241
G + S ST ++L I+KL+ E ++ ++ N
Sbjct: 376 GARDSKKDASGMSANGTVENCIPENKISTPSAIERLEQDIKKLQAELQQARQNESELRNQ 435
Query: 242 ITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEG-MKA 300
I+ + + K +L+KE + +Q L + A K ++S +E +K+
Sbjct: 436 ISLLTSLERSLKSDLG----QLKKENDMLQTKLNSMVSA----KQKDKQSMQSMEKRLKS 487
Query: 301 NEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLK 360
D +L EE K++ + E A + + E LK +
Sbjct: 488 EADSRVNAEKQLAEEKKRKK-----------EEEETAARAAAQAAASREECAESLKQAKQ 536
Query: 361 KSEMQITSLQESLARKTEENAELTSICDDL 390
EM+I L+ L K EE L +L
Sbjct: 537 DLEMEIKKLEHDLKLKEEECRMLEKEAQEL 566
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 30.7 bits (70), Expect = 1.5
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 300 ANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKA--NQDLDLRNKTYEMETT---K 354
+ L+ ELEEELK+ + + +K + +L K Q + + E K
Sbjct: 327 VDFPELKEELKELEEELKELEEELEKIK-KLLKKLPKKARGQLPPEKREQLEKLLETKEK 385
Query: 355 LKAMLKKSEMQITSLQESLARKTEEN 380
L L++ E ++ L+E L E
Sbjct: 386 LSEELEELEEELKELKEELESLYSEG 411
Score = 28.8 bits (65), Expect = 6.6
Identities = 13/88 (14%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 216 EKDKLIEKLKKENASYQKMLNDYENTITQCVNQREND-----KKQFEKYKKELEKEKEEV 270
E + +++L++E ++ L + + + + ++Q EK + EK EE+
Sbjct: 331 ELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEEL 390
Query: 271 QLHLRNSEIAFNDVHLKYERSKVIIEGM 298
+ + ++ Y K+ +
Sbjct: 391 EELEEELKELKEELESLYSEGKISVNKT 418
>gnl|CDD|221180 pfam11712, Vma12, Endoplasmic reticulum-based factor for assembly
of V-ATPase. The yeast vacuolar proton-translocating
ATPase (V-ATPase) is the best characterized member of
the V-ATPase family. A total of thirteen genes are
required for encoding the subunits of the enzyme complex
itself and an additional three for providing factors
necessary for the assembly of the whole. Vma12 is one of
these latter, all three of which are localised to the
endoplasmic reticulum.
Length = 137
Score = 29.2 bits (66), Expect = 1.8
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 208 PERNSTSDEKDKLIEKLKK--ENASYQKMLNDYENTI 242
P + S E +E+L+ E YQ+M + +
Sbjct: 15 PPKPEPSPEFLARLERLRAAQEEREYQRMTRNVDPQT 51
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 30.6 bits (70), Expect = 1.9
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 250 ENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARH 309
+ KK+ EK +KEL + L + V KV++E + A+ED LR
Sbjct: 771 KEQKKEIEKLRKELAELLAS---ELLSKAEEVGGV-------KVVVEEVDADEDELRKIA 820
Query: 310 SELEEE 315
+EL +E
Sbjct: 821 NELAKE 826
>gnl|CDD|151783 pfam11342, DUF3144, Protein of unknown function (DUF3144). This
family of proteins with unknown function appears to be
restricted to Proteobacteria.
Length = 78
Score = 28.0 bits (63), Expect = 2.2
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 199 TAHTANLISPERNSTSDEKDKLIEKLKKENASYQKMLND 237
A A + +KD+ +E ++ Y+KML D
Sbjct: 37 NAFVAANSFESGADLAADKDEAVEYFSEQ---YKKMLRD 72
>gnl|CDD|172308 PRK13770, PRK13770, histidinol dehydrogenase; Provisional.
Length = 416
Score = 30.2 bits (68), Expect = 2.3
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 17/109 (15%)
Query: 288 YERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKT 347
Y + I + +K + D + LK +D KT LE +++ +
Sbjct: 22 YPIIRDICQEVKVHGD----------KALKMYNLTFDHTKT---DHLEISHEQIK---AA 65
Query: 348 YEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSS 396
++ K K L++S +I + QES+ ++T + E + C ++ L S
Sbjct: 66 FDTLDEKTKQALQQSYERIKAYQESI-KQTNQQLEESVECYEIYHPLES 113
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 29.5 bits (67), Expect = 2.5
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 248 QRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANE-DHLR 306
Q E K + E+ K+LE+EKEE++ + E + + E + I E A+E L+
Sbjct: 117 QAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAFLK 176
Query: 307 ARHSELEEELKK 318
++ +L+ +L++
Sbjct: 177 KQNQQLKSQLEQ 188
>gnl|CDD|216651 pfam01697, Glyco_transf_92, Glycosyltransferase family 92. Members
of this family act as galactosyltransferases, belonging
to glycosyltransferase family 92. The aligned region
contains several conserved cysteine residues and several
charged residues that may be catalytic residues. This is
supported by the inclusion of this family in the GT-A
glycosyl transferase superfamily.
Length = 266
Score = 29.4 bits (66), Expect = 2.7
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 11/67 (16%)
Query: 230 SYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKY- 288
K+L +YE T + + + + RN A ND L+Y
Sbjct: 45 YDYKVLKEYEKT----------GYVELIPWPPGPPYLEPNSNVEWRNQAAAQNDCLLRYK 94
Query: 289 ERSKVII 295
E +K I
Sbjct: 95 EAAKWIA 101
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 29.7 bits (67), Expect = 3.1
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 302 EDHLRARHSELEEELKKQVNKYDALKT---HAISQLEKANQDLDLRNKTYEMETTKLKAM 358
+ + LE ELK+Q KY+ L H ++LE+A + L+ K + E L
Sbjct: 204 PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEE 263
Query: 359 LKKSEMQITSLQESLARKTEENAEL 383
++ E Q+ ++ + + EL
Sbjct: 264 REQLERQLKEIEAARKANRAQLREL 288
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.
Length = 402
Score = 29.4 bits (67), Expect = 3.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 52 LKEEKELAEDTKEVVNLSGHSDRDL 76
+K EL++D +VNLSG D+D+
Sbjct: 366 IKLAPELSKDETILVNLSGRGDKDI 390
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 29.7 bits (67), Expect = 3.6
Identities = 30/176 (17%), Positives = 72/176 (40%), Gaps = 9/176 (5%)
Query: 215 DEKDKLIEKLKKENASYQKML--NDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQL 272
+ + +++LK+ + + + + + + + + K+ E+ +LE+ + ++L
Sbjct: 562 RQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLEL 621
Query: 273 HLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAIS 332
+E+ + L+ E K + E+ L+A ELEE++++ + +
Sbjct: 622 SEAENELEEAEEELESELEK--LNLQAELEELLQAALEELEEKVEELEAEIRRELQRIEN 679
Query: 333 QLEKANQDLDLRNKTYEMETTK-----LKAMLKKSEMQITSLQESLARKTEENAEL 383
+ + + +L E+E + L L + E I L+ A E EL
Sbjct: 680 EEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKEL 735
Score = 28.6 bits (64), Expect = 7.9
Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 17/185 (9%)
Query: 214 SDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEK-------- 265
++ +KL E LK+ + + + E +++ + E+ + E+ KEL+K
Sbjct: 166 LEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQ 225
Query: 266 EKEEVQLHLRNSEIAFNDVHL---KYERSKVIIEGMKANEDH----LRARHSELEEELKK 318
E+EE++ + E ++ + E K + +++ E ELE L++
Sbjct: 226 EEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEE 285
Query: 319 QVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTE 378
K + L+ E + LR E+E +L LK E ++ L+E L +
Sbjct: 286 LEEKIERLEELEREIEELEEELEGLRALLEELE--ELLEKLKSLEERLEKLEEKLEKLES 343
Query: 379 ENAEL 383
E EL
Sbjct: 344 ELEEL 348
>gnl|CDD|214710 smart00533, MUTSd, DNA-binding domain of DNA mismatch repair MUTS
family.
Length = 308
Score = 28.8 bits (65), Expect = 4.8
Identities = 28/160 (17%), Positives = 50/160 (31%), Gaps = 16/160 (10%)
Query: 249 RENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRAR 308
D K + + E+ L + + + +I +G D LR +
Sbjct: 99 ESLDGPLLGLLLKVILEPLLELLELLLELLNDDDPLEVNDG--GLIKDGFDPELDELREK 156
Query: 309 HSELEEELKKQVNKY------DALKTHAISQLE-----KANQDLDLRNKTYEMETTKLKA 357
ELEEEL++ + K D+LK ++ + + K
Sbjct: 157 LEELEEELEELLKKEREELGIDSLKLGYNKVHGYYIEVTKSEAKKVPKDFIRRSSLKNTE 216
Query: 358 MLKKSEMQITSLQESLAR-KTEENAELTSICDDLISKLSS 396
E + L+ L K E I +L+ K+
Sbjct: 217 RFTTPE--LKELENELLEAKEEIERLEKEILRELLEKVLE 254
>gnl|CDD|217011 pfam02388, FemAB, FemAB family. The femAB operon codes for two
nearly identical approximately 50-kDa proteins involved
in the formation of the Staphylococcal pentaglycine
interpeptide bridge in peptidoglycan. These proteins are
also considered as a factor influencing the level of
methicillin resistance.
Length = 408
Score = 28.8 bits (65), Expect = 6.4
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 218 DKLIEKLKKENASYQKMLNDYE-NTITQCVNQRENDKKQFEKYKKELEKEKEEVQLH 273
D+L EKL+K K+ E N ++ N+ ++Q +K +++ KE + +
Sbjct: 245 DELQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKRIDEAKELIAKY 301
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 28.7 bits (64), Expect = 7.1
Identities = 33/160 (20%), Positives = 73/160 (45%), Gaps = 7/160 (4%)
Query: 232 QKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFN----DVHLK 287
+++ EN + + + K + + +L+ EKE+ + S ++ +
Sbjct: 120 EELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSEMQCR 179
Query: 288 YERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKA--NQDLDLRN 345
+ + ++ +++ + LR + E ++EL + K +L + S + + + L+
Sbjct: 180 AQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIKHLEEEL 239
Query: 346 KTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTS 385
K YE + +K+M K+ +QI L+ LA EEN +L S
Sbjct: 240 KRYEQDAEVVKSM-KEQLLQIPELERELAALREENRKLRS 278
>gnl|CDD|235288 PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.
Length = 397
Score = 28.5 bits (65), Expect = 7.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 52 LKEEKELAEDTKEVVNLSGHSDRDL 76
LK L +D VVNLSG D+D+
Sbjct: 362 LKLAPTLGKDQIIVVNLSGRGDKDV 386
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 28.1 bits (63), Expect = 9.3
Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 27/168 (16%)
Query: 206 ISPERNSTSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQREND-----KKQFEKYK 260
I + + +K ++KL+ + + L + E + +++ + + E+
Sbjct: 280 IKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEE--LRQKGELLYANLQLIEEGL 337
Query: 261 KELEK------EKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEE 314
K + E+ +++L + + K + ++G K N D + E
Sbjct: 338 KSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKK---LKGAKVNLDRQLSELKEAIA 394
Query: 315 ELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKS 362
+ A + LEKA + E+ L KK
Sbjct: 395 YYES-----------AKTALEKAEGKKAIEEIREELIEEGLLKSKKKK 431
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 28.1 bits (63), Expect = 9.4
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 214 SDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLH 273
S +++ E+ K+ +Y E T C+ RE ++++E++ +E + L
Sbjct: 551 SSGGNQVNEETKEHLENYAS-----EGLRTLCIAYRELSEEEYEEWNEEYNEAS--TALT 603
Query: 274 LRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRA 307
R ++ DV + +I+ G A ED L+
Sbjct: 604 DREEKL---DVVAESIEKDLILLGATAIEDKLQE 634
>gnl|CDD|191973 pfam08232, Striatin, Striatin family. Striatin is an intracellular
protein which has a caveolin-binding motif, a
coiled-coil structure, a calmodulin-binding site, and a
WD (pfam00400) repeat domain. It acts as a scaffold
protein and is involved in signalling pathways.
Length = 133
Score = 26.9 bits (60), Expect = 9.8
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 305 LRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNK 346
++AR ++LE E + N + LK I LE A + + K
Sbjct: 30 MKARIAQLEGERRGLENLKEDLKRR-IKMLEYALKQERAKLK 70
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 28.1 bits (63), Expect = 9.9
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 208 PERNSTSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEK 267
+ + + K E ++ N + ++ E + + V E +K++ E+ +LE+
Sbjct: 493 EDAEANAALDKKFRELVEARNEAES-LIYSLEKALKEIVKVSEEEKEKIEEAITDLEEAL 551
Query: 268 EE 269
E
Sbjct: 552 EG 553
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.304 0.123 0.321
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,118,043
Number of extensions: 1829348
Number of successful extensions: 3077
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2662
Number of HSP's successfully gapped: 513
Length of query: 402
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 303
Effective length of database: 6,546,556
Effective search space: 1983606468
Effective search space used: 1983606468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 60 (27.0 bits)