RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13761
(402 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.9 bits (144), Expect = 9e-10
Identities = 65/409 (15%), Positives = 112/409 (27%), Gaps = 148/409 (36%)
Query: 48 LSERLKEE-KELAEDTKEVVNLSGHSDRDLLENEIPV-----------------NLMEDE 89
L +K E ++ + T+ + RD L N+ V L+E
Sbjct: 94 LMSPIKTEQRQPSMMTRMYI-----EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 90 NLN-----------KS----EAGPNTAELSKEDFQ----TGDECKAPISESELRK-QSLY 129
K+ + + K DF+ C +P E+ L Q L
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP--ETVLEMLQKLL 206
Query: 130 VQFDPFLKSPVRQKPSIKSPPTQSIMEE--------------------------ESLNDS 163
Q DP S +IK SI E + N S
Sbjct: 207 YQIDPNWTSRSDHSSNIKL-RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 164 AKLLGTS-----------------ELNESVNSLSIKENESLNGNCATSTPSGTAHTANLI 206
K+L T+ L+ +L+ E +SL P
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 207 SPERNSTSDEKDKLIEKLKKENAS----YQKMLND-YENTITQCVNQREND--KKQFEK- 258
+P R S +I + ++ + ++ + D I +N E +K F++
Sbjct: 326 NPRRLS-------IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 259 -------------------YKKELEKEKEEVQLHLR--------NSEIAFNDVHLKYERS 291
+ + +LH S I+ ++L+
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL--- 435
Query: 292 KVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQD 340
K ++ A H + V+ Y+ KT L D
Sbjct: 436 -------KVKLENEYALH-------RSIVDHYNIPKTFDSDDLIPPYLD 470
Score = 45.6 bits (107), Expect = 3e-05
Identities = 24/187 (12%), Positives = 57/187 (30%), Gaps = 50/187 (26%)
Query: 213 TSDEKDK--LIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEV 270
+ L+ +K E M Y + ++ ND + F KY + ++
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYI----EQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 271 QLHLRNSEIAFNDVHLKYERSKVIIEGMK-------ANE---DH--------------LR 306
+ L L+ + V+I+G+ A + + L+
Sbjct: 141 RQALLE---------LRPAK-NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 307 ARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQI 366
+S E L+ Q++ + ++ ++A L++ ++
Sbjct: 191 NCNSP-ETVLEMLQKLL--------YQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKS 240
Query: 367 TSLQESL 373
+ L
Sbjct: 241 KPYENCL 247
Score = 37.5 bits (86), Expect = 0.007
Identities = 58/373 (15%), Positives = 118/373 (31%), Gaps = 108/373 (28%)
Query: 11 TKQLKKKSLPKEPFNPHNDSLGEFELAESQLISEEKRLSERLKEEKELAEDTK-EVVNLS 69
T L + + H+ +L E+ L+ K L R ++ T +++
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKS--LLL--KYLDCRPQDLPREVLTTNPRRLSII 333
Query: 70 GHSDRDLLENEIPVNLMEDENLNKSEAGPNTAELSKEDFQTGDECKAPISESELRKQSLY 129
S RD L + + L E S + +E RK ++
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTT------IIESSLNV----------LEPAEYRK--MF 375
Query: 130 VQFDPFLKSPVRQKPSIKSPPTQSIM-------EEESLNDSAKLLGTSELNE-------S 175
+ F S I PT + + + + KL S + + S
Sbjct: 376 DRLSVFPPS-AH----I---PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 176 VNSLSIK-----ENE-SLNGNCATSTPSGTAHTANLISPE--------------RNSTSD 215
+ S+ ++ ENE +L+ + ++ + P +N
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 216 EKDKLIEKLKKENASY-------QKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKE 268
E+ L + + QK+ +D +T N +Q + YK
Sbjct: 488 ERMTLFRMV------FLDFRFLEQKIRHD--STAWNASGSILNTLQQLKFYKP------- 532
Query: 269 EVQLHLRNSEIAFNDVHLKYERSKVIIEG--MKANEDHLRARHSELEEELKKQV---NKY 323
++ D KYER I K E+ + +++++L ++ +
Sbjct: 533 ----YIC-------DNDPKYERLVNAILDFLPKIEENLICSKYTDL-----LRIALMAED 576
Query: 324 DALKTHAISQLEK 336
+A+ A Q+++
Sbjct: 577 EAIFEEAHKQVQR 589
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 56.8 bits (137), Expect = 7e-09
Identities = 38/197 (19%), Positives = 86/197 (43%), Gaps = 10/197 (5%)
Query: 209 ERNSTSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKE 268
E E + IE+ ++ + Q + + E ++ E +++L+ EK
Sbjct: 924 ELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD----LEEQLEEEEAARQKLQLEKV 979
Query: 269 EVQLHLRNSE---IAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDA 325
++ E + D + K + + ++E ++ A E + L K NK+++
Sbjct: 980 TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHES 1039
Query: 326 LKT---HAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAE 382
+ + + + EK+ Q+L+ + E E++ L + + + QI L+ LA+K EE
Sbjct: 1040 MISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099
Query: 383 LTSICDDLISKLSSCVK 399
+ +D S+ ++ +K
Sbjct: 1100 ALARLEDETSQKNNALK 1116
Score = 55.2 bits (133), Expect = 2e-08
Identities = 33/182 (18%), Positives = 69/182 (37%), Gaps = 19/182 (10%)
Query: 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHL 274
+E++ +KL+ E + + E+ I E+ + K +K LE+ ++ +L
Sbjct: 965 EEEEAARQKLQLEKVTADGKIKKMEDDILI----MEDQNNKLTKERKLLEERVSDLTTNL 1020
Query: 275 RNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQL 334
E ++ + + +I ++ ELE+ +K L
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK---------------L 1065
Query: 335 EKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKL 394
E + DL + + + +LKA L K E ++ + L +T + +L S +
Sbjct: 1066 EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHI 1125
Query: 395 SS 396
S
Sbjct: 1126 SD 1127
Score = 52.5 bits (126), Expect = 2e-07
Identities = 34/188 (18%), Positives = 74/188 (39%), Gaps = 2/188 (1%)
Query: 209 ERNSTSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKE 268
+ +EK+ L EKL+ E Y + + + E + E +E E+ +
Sbjct: 886 KHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK-QELEEILHEMEARIEEEEERSQ 944
Query: 269 EVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKT 328
++Q + + D+ + E + + ++ + + ++E+++ ++ + L T
Sbjct: 945 QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL-T 1003
Query: 329 HAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICD 388
LE+ DL E + L + K E I+ L+ L ++ + EL I
Sbjct: 1004 KERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKR 1063
Query: 389 DLISKLSS 396
L + S
Sbjct: 1064 KLEGESSD 1071
Score = 50.2 bits (120), Expect = 8e-07
Identities = 29/178 (16%), Positives = 63/178 (35%), Gaps = 25/178 (14%)
Query: 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQR----------ENDKKQFEKYKKELE 264
E+++ + L K ++ M+++ E + + R E + + EL+
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080
Query: 265 KEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYD 324
+ E++ L E + E L + S+L+E+L+ +
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESE----- 1135
Query: 325 ALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAE 382
A ++ EK +DL E LK L+ + + QE +++ +
Sbjct: 1136 ---KAARNKAEKQKRDL-------SEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 39.4 bits (92), Expect = 0.002
Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 12/149 (8%)
Query: 248 QRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRA 307
+ +++ + +EL++ KE Q H + K +++ E L A
Sbjct: 851 KVTRQEEEMQAKDEELQRTKER-QQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909
Query: 308 RHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQIT 367
E+ L + +LE+ +++ R + E + +L+A KK + Q+
Sbjct: 910 EAEEMRVRLAAKKQ-----------ELEEILHEMEARIEEEEERSQQLQAEKKKMQQQML 958
Query: 368 SLQESLARKTEENAELTSICDDLISKLSS 396
L+E L + +L K+
Sbjct: 959 DLEEQLEEEEAARQKLQLEKVTADGKIKK 987
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 46.6 bits (111), Expect = 1e-05
Identities = 24/178 (13%), Positives = 64/178 (35%), Gaps = 28/178 (15%)
Query: 219 KLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSE 278
+ +E+ KK + + + + I + + ++ ++ + E E+++ +
Sbjct: 914 RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLR 973
Query: 279 IAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKAN 338
++ + R L+EE+ K + Q +
Sbjct: 974 MSEEEAKNATNRVL------------------SLQEEIAKL--------RKELHQTQTEK 1007
Query: 339 QDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSS 396
+ ++ Y+ ET +L + LK+ + + +E L R+ + + I + + KL
Sbjct: 1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD--QAKEITETMEKKLVE 1063
Score = 36.2 bits (84), Expect = 0.022
Identities = 20/139 (14%), Positives = 45/139 (32%), Gaps = 11/139 (7%)
Query: 258 KYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELK 317
K + + +Q LR + + E +II+ H L+ +
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892
Query: 318 KQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKT 377
Q + + +L+ + ++ + K + E +I LQ + +
Sbjct: 893 LQCCYRRMMAKRELKKLKIEARSVE-----------RYKKLHIGLENKIMQLQRKIDEQN 941
Query: 378 EENAELTSICDDLISKLSS 396
+E L ++L S+
Sbjct: 942 KEYKSLLEKMNNLEITYST 960
Score = 30.8 bits (70), Expect = 0.90
Identities = 15/133 (11%), Positives = 36/133 (27%), Gaps = 31/133 (23%)
Query: 209 ERNSTSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKE 268
E S ++ + L E + + + E + K L++E
Sbjct: 943 EYKSLLEKMNNLEITYSTETEKLRSDVERLRMS--------EEEAKNATNRVLSLQEEIA 994
Query: 269 EVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRAR-------------------- 308
+++ L ++ + ++ K E + +
Sbjct: 995 KLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054
Query: 309 ---HSELEEELKK 318
+L EE K+
Sbjct: 1055 ETMEKKLVEETKQ 1067
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 3e-05
Identities = 39/201 (19%), Positives = 67/201 (33%), Gaps = 75/201 (37%)
Query: 2 LRKYQTNPPTKQLKKKSLPKEPFNPHNDSLGEFE-----------LAESQLISEEKRLSE 50
+R Y+ P T SLP P + DSL E L + Q+ + +
Sbjct: 308 VRCYEAYPNT------SLP--P-SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 51 RLKEEK--ELAEDTKEVVN------LSGHSDRDLLENEIPVNLMEDENLNKSEAGPNTAE 102
L K E++ +VN +SG + L +NL L K++A
Sbjct: 359 HLPAGKQVEIS-----LVNGAKNLVVSGPP-QSL----YGLNL----TLRKAKAPSGL-- 402
Query: 103 LSKEDFQTGDECKAPISESELRKQSLYVQFDPFLKSPVRQKPSIKSP-------PTQSIM 155
D+ + P SE RK +F P + SP P ++
Sbjct: 403 ---------DQSRIPFSE---RKLKFSNRFLP-----------VASPFHSHLLVPASDLI 439
Query: 156 EEESLNDSAKLLGTSELNESV 176
++ + ++ ++ V
Sbjct: 440 NKDLVKNNVSFNA-KDIQIPV 459
Score = 35.8 bits (82), Expect = 0.033
Identities = 69/447 (15%), Positives = 127/447 (28%), Gaps = 176/447 (39%)
Query: 7 TNPPTKQLKKKSLPK----------EPFNPHNDSL-------GE------F--------- 34
T +K K L K PF+ ++S G F
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 35 --ELAE---------SQLISEEKRLSERLKEEKELAEDTKEVVNLSGHS-D-RDLLENEI 81
EL + LI K +E L E L T + + + + LEN
Sbjct: 170 FEELRDLYQTYHVLVGDLI---KFSAETLSE---LIRTTLDAEKVFTQGLNILEWLEN-- 221
Query: 82 PVNLMEDENLNKSE--------------------AGPNTAELSKEDFQTGDECKAPI--- 118
P N + + L G EL + + +
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL-RSYLKGATGHSQGLVTA 280
Query: 119 -----SESELRKQSLYVQFDPFLK----SPVR-QK--PSIKSPPTQSIMEEESLNDSAKL 166
++S +S +V + VR + P+ PP+ + E+SL
Sbjct: 281 VAIAETDSW---ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS---ILEDSL------ 328
Query: 167 LGTSELNE-------SVNSLSIKENESLNGNCATSTPSGTA-HTANLISPERNS--TSDE 216
E NE S+++L+ ++ + + P+G + + +N +
Sbjct: 329 ----ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA-KNLVVSGPP 383
Query: 217 KD--KLIEKLKKENASYQKMLNDYENTITQC---VNQRENDKKQFE------------KY 259
+ L L+K A + + Q ++R K +F
Sbjct: 384 QSLYGLNLTLRKAKA---------PSGLDQSRIPFSER---KLKFSNRFLPVASPFHSHL 431
Query: 260 KKELEKEKEEVQLHLRNSEIAFNDVHLK---YERSKVIIEGMKANED--HLRARHSELEE 314
L + + L + ++FN ++ Y D LR + E
Sbjct: 432 ---LVPASDLINKDLVKNNVSFNAKDIQIPVY-----------DTFDGSDLRVLSGSISE 477
Query: 315 EL-----KKQVN-----KYDALKTHAI 331
+ + V ++ A TH +
Sbjct: 478 RIVDCIIRLPVKWETTTQFKA--THIL 502
Score = 35.0 bits (80), Expect = 0.044
Identities = 38/196 (19%), Positives = 62/196 (31%), Gaps = 71/196 (36%)
Query: 12 KQLKKKSLPKEPFNP----HNDSLGEFELAESQLISEEKRLSERLKEEKELAEDTKEVVN 67
+ LK K L P + H SLGE+ + L S +S E EVV
Sbjct: 1745 EDLKSKGL--IPADATFAGH--SLGEY----AALASLADVMS---------IESLVEVVF 1787
Query: 68 LSGHSDRDLLENEIPVNLMEDENLNKSEAG-----PNT--AELSKEDFQTGDECKAPISE 120
G ++ +P DE L +S G P A S+E Q + E
Sbjct: 1788 YRG----MTMQVAVP----RDE-LGRSNYGMIAINPGRVAASFSQEALQY-------VVE 1831
Query: 121 SELRKQSLYVQFDPFLKSPVRQKPSI---KSPPTQSIM--EEESLNDSAKLLG------- 168
++ V+ I Q + + +L+ +L
Sbjct: 1832 RVGKRTGWLVE--------------IVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Query: 169 -TSELNESVNSLSIKE 183
EL +S++ ++
Sbjct: 1878 DIIELQKSLSLEEVEG 1893
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA
export, nuclear hydrolase; HET: IHP; 2.50A
{Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B*
3rrm_B* 3rrn_B*
Length = 297
Score = 35.1 bits (80), Expect = 0.029
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEK 265
K ++ +KK + + + +L+ ++ I Q N +Q K + EL +
Sbjct: 23 KQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQ 71
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 34.6 bits (80), Expect = 0.056
Identities = 12/104 (11%), Positives = 24/104 (23%), Gaps = 2/104 (1%)
Query: 216 EKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLR 275
+ + Q L + E +C + +L + L
Sbjct: 906 SVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELT 965
Query: 276 NSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQ 319
+ F +S E K R ++E+
Sbjct: 966 ERKDTFFAQQWTGVKSS--AETYKNTLLAELERLQKIEDLHHHH 1007
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.084
Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 314 EELKKQVNKYDALKTHAISQL-EKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQES 372
EE +K++ + DA + EKA +DL+ N+ + K K + ++ ++
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD-------KA 144
Query: 373 LARKTEENA 381
++ + +
Sbjct: 145 FYQQPDADI 153
Score = 32.1 bits (72), Expect = 0.18
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 250 ENDKKQFEKYKKEL-EKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRAR 308
E+ +K E+ +K L E + + E A D+ +R E ++ N+ + R
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS---EQVEKNKINNRIA 141
Query: 309 HSELEEELKKQVN 321
++ +Q +
Sbjct: 142 ----DKAFYQQPD 150
Score = 30.1 bits (67), Expect = 0.88
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 222 EKLKKENASYQKMLNDY-ENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIA 280
E ++K +K L + + RE KK E++ + ++ E+ +++ R ++ A
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
Query: 281 F 281
F
Sbjct: 145 F 145
Score = 29.7 bits (66), Expect = 1.1
Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 209 ERNSTSDEK-DKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKE 266
E ++ S + EK KK+ + + Q + N++ + + ++ + +
Sbjct: 100 ELDAASKVMEQEWREKAKKDLEEW------NQRQSEQVEKNKINNRIADKAFYQQPDAD 152
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Length = 409
Score = 31.8 bits (72), Expect = 0.36
Identities = 12/85 (14%), Positives = 30/85 (35%)
Query: 315 ELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLA 374
+ NKY + ++E Q + E +K + + + E L
Sbjct: 24 GIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLT 83
Query: 375 RKTEENAELTSICDDLISKLSSCVK 399
+K+++ E ++ I + ++
Sbjct: 84 QKSKKIIEEIIRYENTILAHENTIQ 108
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 30.5 bits (67), Expect = 1.2
Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 9/171 (5%)
Query: 236 NDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVII 295
+D+E K KE E + Q + +
Sbjct: 107 DDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEE 166
Query: 296 EGMKANEDHLRARHSELEEELKKQVNKYDALKTHAIS---QLEKANQDLDLRNKTYEMET 352
+ + E + +A S E+LKK +K + K + + EK+ ++LD Y
Sbjct: 167 KLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENM 226
Query: 353 TKLKAMLKKSE-MQITSLQESLAR-----KTEENAELTSICDDLISKLSSC 397
++ ++ E ++ +E L A +I DL + +
Sbjct: 227 EQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAA 277
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis,
A/B(TIM)-barrel, site directed mutagenesis; HET: CBS;
1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3
c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Length = 858
Score = 30.5 bits (68), Expect = 1.2
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 111 GDECKAPISESELRKQSLYVQFDPFLKSPVRQKPSIKSPPTQSIMEEESLNDSAKLLG-- 168
G E K + ++ + KP KS Q++++E + D L
Sbjct: 511 GAEAKNIRLGAGYTDKAKPEPGKGIIDQSNEDKPWAKSQVCQTMIKEGKVADMEHLPSYF 570
Query: 169 TSELNESVNSLSIK 182
E+++ V + I
Sbjct: 571 GQEVSKLVKAHGID 584
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 29.5 bits (67), Expect = 1.8
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 262 ELEKEKEEVQ-------LHLRNSEIAFNDVHLKYERSKVIIEGM 298
+L KE+ EV+ L + I F +VH Y + ++ +
Sbjct: 30 DLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDV 73
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A
{Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Length = 86
Score = 27.2 bits (61), Expect = 2.5
Identities = 6/56 (10%), Positives = 21/56 (37%)
Query: 295 IEGMKANEDHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEM 350
+ ++ A+ +LE+ L ++ + L ++ + + + Y+
Sbjct: 5 LSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQE 60
>3tj0_A Nucleoprotein; RNA-binding, HOMO-oligomerization, transcription
regulation, RNA binding protein; 3.23A {Influenza b
virus}
Length = 562
Score = 28.8 bits (63), Expect = 3.5
Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 192 ATSTPSGTAHTANLISPERNSTSDEKDKLIEKLKKENASYQKMLND------YENTITQC 245
AT P T N SPER +TS E D + KK+ + K E
Sbjct: 38 ATLAPPSNKRTRN-PSPERATTSSEDDVGRKTQKKQTPTEIKKSVYNMVVKLGEFYNQMM 96
Query: 246 VNQRENDKKQ 255
V ND +
Sbjct: 97 VKAGLNDDME 106
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative,
no structural genomics consortium, NESG, structural
protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Length = 119
Score = 27.6 bits (62), Expect = 3.5
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 24/121 (19%)
Query: 249 RENDKKQFEKYKKEL-------EKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKAN 301
+E+ +EL +K V++ N + K +
Sbjct: 11 MSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ-----------E 59
Query: 302 EDHLRARHSELEEE---LKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAM 358
E R E E ++ V+ + ++E +++ K +E E +L+A
Sbjct: 60 EMLQRE---EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQ 116
Query: 359 L 359
+
Sbjct: 117 I 117
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 28.6 bits (64), Expect = 3.9
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 338 NQDLDLRNKTYEMETTKLKAMLKKSEMQITSLQESLARKTEENAELTSICDDLISKLSS 396
+ ++ E+ L+ + + QI L E + L D+ S
Sbjct: 2 SGQKTVQKILEEVR--ILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSR 58
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 28.7 bits (64), Expect = 4.0
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Query: 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHL 274
DE +K +K+ + Y+K L E + + K+ LEKEKE++ +
Sbjct: 159 DEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMS----NLEKEKEKLTKFV 214
Query: 275 RNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQ 319
+ ++ + + + + +L SE +
Sbjct: 215 EYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFV 259
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 28.5 bits (63), Expect = 4.3
Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 10/120 (8%)
Query: 214 SDEKDKLIEKLKKENASYQKMLNDYENTITQC--VNQRENDKKQFEKYKKELEKEKEEVQ 271
D + + +LK + YQ +Y+ + +Q K+ + E K EE Q
Sbjct: 10 EDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEE-Q 68
Query: 272 LHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRAR-------HSELEEELKKQVNKYD 324
+ + E ++ ++ + N + L++R ++LE++L+ Q +
Sbjct: 69 GQTQEKCSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNR 128
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 28.6 bits (63), Expect = 4.3
Identities = 18/98 (18%), Positives = 29/98 (29%)
Query: 303 DHLRARHSELEEELKKQVNKYDALKTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKS 362
+ LR + E ELKK + L Q L + ++ A+ +K
Sbjct: 22 EELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERMSRETALQQKQ 81
Query: 363 EMQITSLQESLARKTEENAELTSICDDLISKLSSCVKL 400
T LQ + EL + L +
Sbjct: 82 VSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTI 119
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive,
ACT DOMA amino-acid biosynthesis, threonine
biosynthesis; HET: ANP; 2.30A {Methanocaldococcus
jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Length = 473
Score = 28.4 bits (64), Expect = 4.9
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 239 ENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVII--E 296
E I+ V ++ +K K L++E + + DV + + + +
Sbjct: 358 ETNISLVV-----SEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDVCVISVVGA 412
Query: 297 GMKAN 301
GM+
Sbjct: 413 GMRGA 417
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural
genomics/proteomics initiative, structural genomics,
lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP:
c.79.1.1 PDB: 1wdw_B*
Length = 388
Score = 28.3 bits (64), Expect = 5.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 48 LSERLKEEKELAEDTKEVVNLSGHSDRDL 76
++ +K KE++ D +VNLSG D+DL
Sbjct: 350 VAYAMKLAKEMSRDEIIIVNLSGRGDKDL 378
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan
biosynthesis, structural genomics; 2.20A {Mycobacterium
tuberculosis} PDB: 2o2j_A
Length = 422
Score = 28.0 bits (63), Expect = 5.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 48 LSERLKEEKELAEDTKEVVNLSGHSDRDL 76
++ LK EL VVNLSG D+D+
Sbjct: 381 VAGALKLGVELGRGAVIVVNLSGRGDKDV 409
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 28.1 bits (62), Expect = 6.0
Identities = 8/63 (12%), Positives = 20/63 (31%)
Query: 217 KDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRN 276
+ K E +++ Y M + + + KK E E + + ++
Sbjct: 395 QKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEEKPE 454
Query: 277 SEI 279
+
Sbjct: 455 GHV 457
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 27.9 bits (62), Expect = 6.4
Identities = 10/95 (10%), Positives = 29/95 (30%), Gaps = 7/95 (7%)
Query: 216 EKDKLIEKLKKENASYQKMLNDYENTITQCVNQ-------RENDKKQFEKYKKELEKEKE 268
E ++KLK++ + + C N K Q++ + K
Sbjct: 195 ELPTEVQKLKEKCDGKINYTDKKVCKVPPCQNACKSYDQWITRKKNQWDVLSNKFISVKN 254
Query: 269 EVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANED 303
++ ++ + + + + + N+
Sbjct: 255 AEKVQTAGIVTPYDILKQELDEFNEVAFENEINKR 289
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG
BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1
PDB: 1mql_B* 1mqn_B* 2l4g_A
Length = 221
Score = 27.3 bits (60), Expect = 7.7
Identities = 21/137 (15%), Positives = 57/137 (41%), Gaps = 5/137 (3%)
Query: 240 NTITQCVNQR-ENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGM 298
+ I + +N+ E ++F + +KE + + +Q + E D+ V +E
Sbjct: 46 DQINRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ 105
Query: 299 KANEDHLRARHSELEEELKKQV-NKYDALKTHAISQLEKANQDL--DLRNKTYEMETTKL 355
+ + ++L E+ ++Q+ + + K + +RN TY+ + +
Sbjct: 106 HTIDLA-DSEMNKLFEKTRRQLRENAEDMGNGCFKIYHKCDNACIESIRNGTYDHDIYRD 164
Query: 356 KAMLKKSEMQITSLQES 372
+A+ + +++ L+
Sbjct: 165 EALNNRFQIKGVELKSG 181
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 27.4 bits (60), Expect = 8.0
Identities = 25/169 (14%), Positives = 57/169 (33%), Gaps = 11/169 (6%)
Query: 239 ENTITQCVNQRENDKKQFEKYKKELEKEKEEVQLHLRNSEIAFNDVHLKYERSKVIIEGM 298
EN + + ++ ++ +K +E Q L N + K+ER E
Sbjct: 90 ENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKA 149
Query: 299 KANEDHLRARHSELEEELKKQVNKYDALKTHA-------ISQLEKANQDLDLRNKTYEME 351
+ L + + +++K + A +QL++ N+D + Y +
Sbjct: 150 AQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRD---QAHFYFSQ 206
Query: 352 TTKLKAMLKKSEMQ-ITSLQESLARKTEENAELTSICDDLISKLSSCVK 399
++ L+ + + T L +E E+ I + +
Sbjct: 207 MPQIFDKLQDMDERRATRLGAGYGLLSEAELEVVPIIAKCLEGMKVAAN 255
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
2.50A {Thermus thermophilus}
Length = 418
Score = 27.6 bits (62), Expect = 8.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 48 LSERLKEEKELAEDTKEVVNLSGHSDRDL 76
++ K E+ +D V+NLSG D+D+
Sbjct: 379 IAYAAKVVPEMDKDQVVVINLSGRGDKDV 407
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 27.1 bits (59), Expect = 9.3
Identities = 18/160 (11%), Positives = 55/160 (34%), Gaps = 2/160 (1%)
Query: 207 SPERNSTSDEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKE 266
P + + + + + + DY + + E +K+F++ + +K
Sbjct: 68 MPLQYIYTLFLEHDLSLGTLAMETVAQQKRDYYQPLAAKRTEIEKWRKEFKEQWMKEQKR 127
Query: 267 KEEVQLHLRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQVNKYDAL 326
E LR +++ + + + S+ +E ++ + A
Sbjct: 128 MNEAVQALRRAQLQYVQRSEDLRARSQ--GSPEDSAPQASPGPSKQQERRRRSREEAQAK 185
Query: 327 KTHAISQLEKANQDLDLRNKTYEMETTKLKAMLKKSEMQI 366
A + + ++ + R + E+ ++ + ++K Q
Sbjct: 186 AQEAEALYQACVREANARQQDLEIAKQRIVSHVRKLVFQG 225
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.304 0.123 0.321
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,378,500
Number of extensions: 306386
Number of successful extensions: 984
Number of sequences better than 10.0: 1
Number of HSP's gapped: 877
Number of HSP's successfully gapped: 204
Length of query: 402
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 306
Effective length of database: 4,021,377
Effective search space: 1230541362
Effective search space used: 1230541362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 58 (26.9 bits)