RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13761
         (402 letters)



>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 386

 Score = 33.7 bits (76), Expect = 0.040
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 52  LKEEKELAEDTKEVVNLSGHSDRDL 76
           +K  KE++ D   +VNLSG  D+DL
Sbjct: 354 MKLAKEMSRDEIIIVNLSGRGDKDL 378


>d1eysh1 b.41.1.1 (H:59-259) Photosynthetic reaction centre
           {Thermochromatium tepidum [TaxId: 1050]}
          Length = 201

 Score = 29.8 bits (67), Expect = 0.38
 Identities = 10/52 (19%), Positives = 22/52 (42%)

Query: 111 GDECKAPISESELRKQSLYVQFDPFLKSPVRQKPSIKSPPTQSIMEEESLND 162
             +   PI  S   K++  V+ D    +     P++ +P   ++ EE+ +  
Sbjct: 132 KKKVLLPIGFSRFDKKARKVKVDAIKAAHFANVPTLSNPDQVTLYEEDKVCA 183


>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
           [TaxId: 274]}
          Length = 351

 Score = 30.1 bits (66), Expect = 0.52
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 51  RLKEEKELAEDTKEVVNLSGHSDRDL 76
           +L  E  L  ++  V+ L+GH  +D 
Sbjct: 299 KLLREGRLEPESTVVLTLTGHGLKDP 324


>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
           knowlesi [TaxId: 5850]}
          Length = 294

 Score = 28.1 bits (62), Expect = 2.0
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 7/86 (8%)

Query: 216 EKDKLIEKLKKENASYQKMLNDYENTITQCVNQ-------RENDKKQFEKYKKELEKEKE 268
           E  K   KL ++ AS     N     +  C +            KKQ++    +    K+
Sbjct: 188 ELPKEQGKLNEKCASKLYYNNMAICMLPLCHDACKSYDQWITRKKKQWDVLSTKFSSVKK 247

Query: 269 EVQLHLRNSEIAFNDVHLKYERSKVI 294
             ++   N   A++ +  +    K  
Sbjct: 248 TQKIGTENIATAYDILKQELNGFKEA 273


>d1rzhh1 b.41.1.1 (H:36-248) Photosynthetic reaction centre
           {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 213

 Score = 27.4 bits (61), Expect = 2.2
 Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 107 DFQTGDECKAPISESELRKQSLYVQFDPFLKSPVRQKPSIKSPPTQSIMEEESLND 162
           + + G     P+   +++   ++V  +          P+IKSP   +++EE+ +  
Sbjct: 147 ELKDGSTRLLPMQMVKVQSNRVHV--NALSSDLFAGIPTIKSPTEVTLLEEDKICG 200


>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 390

 Score = 27.9 bits (61), Expect = 2.4
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 52  LKEEKELAEDTKEVV-NLSGHSDRDL 76
           LK  +E  E  + +V NLSG  D+D+
Sbjct: 358 LKMMREQPEKEQLLVVNLSGRGDKDI 383


>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
           {Plasmodium falciparum [TaxId: 5833]}
          Length = 314

 Score = 26.6 bits (58), Expect = 5.5
 Identities = 10/55 (18%), Positives = 23/55 (41%)

Query: 215 DEKDKLIEKLKKENASYQKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEKEE 269
            +K K+IE LK E        ++ +             K+++ K  K+ ++ ++ 
Sbjct: 213 QDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKG 267


>d1v9ma_ f.40.1.1 (A:) V-type ATP synthase subunit C {Thermus
           thermophilus [TaxId: 274]}
          Length = 319

 Score = 26.5 bits (58), Expect = 5.9
 Identities = 15/140 (10%), Positives = 37/140 (26%), Gaps = 11/140 (7%)

Query: 209 ERNSTSDEKDKLIEKLKKENASY-QKMLNDYENTITQCVNQRENDKKQFEKYKKELEKEK 267
            +   + +   + + L        + +      T      +    K+ FE   K  +   
Sbjct: 121 RQAYEAQDPAGMAQVLAVPGHPLARALRAVLRETQDLARVEALLAKRFFEDVAKAAKGLD 180

Query: 268 EEVQLH-------LRNSEIAFNDVHLKYERSKVIIEGMKANEDHLRARHSELEEELKKQV 320
           +              N   AF             ++G +  +    AR  E +  +  ++
Sbjct: 181 QPALRDYLALEVDAENLRTAFKLQGSGLAPDAFFLKGGRFVDRVRFARLMEGDYAVLDEL 240

Query: 321 NKY---DALKTHAISQLEKA 337
           +            +  LE+ 
Sbjct: 241 SGTPFSGLSGVRDLKALERG 260


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.304    0.123    0.321 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,303,289
Number of extensions: 59477
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 62
Length of query: 402
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,213,086
Effective search space: 382122090
Effective search space used: 382122090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 54 (24.8 bits)