BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13762
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 74/131 (56%), Gaps = 13/131 (9%)
Query: 43 ILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNK 102
++CYY+ +Y REG GK+ +L AL C+HLVY YAG+ + S+++ LD K++
Sbjct: 4 LVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQ 63
Query: 103 GHELYKQVTALKTSYPDLNIILGVGGFE--DQKDKEKYLDLV----IHTVG-VKAAY--A 153
+ +VT+LK YP L ++L VGG D KY+DL+ + +G +++AY
Sbjct: 64 ----FSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELV 119
Query: 154 KQNGLAGVAMV 164
K G G+ +
Sbjct: 120 KTYGFDGLDLA 130
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 149 KAAYAKQNGLAGVAMVDLSLDDFKGNC-GEKYVLVKSAKHHL 189
KAAYA+ L GVA+ DLS DDF+G C G+KY ++++ K+ L
Sbjct: 379 KAAYARVKNLGGVALFDLSYDDFRGQCSGDKYPILRAIKYRL 420
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
K++CY+ + A R+G+ + ++L P+L CTHL+YA+AG++N +L T +
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSL--CTHLIYAFAGMTN---------HQLSTTEW 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLV 142
LY++ LK P L +L +GG+ +K+ D+V
Sbjct: 51 NDETLYQEFNGLKKMNPKLKTLLAIGGWN--FGTQKFTDMV 89
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 143 IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKG-NCGE-KYVLVKSAKHHL 189
+ + K +Y KQ GL G + L LDDF G +C + +Y L+++ + L
Sbjct: 316 VESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 364
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
K++CY+ + A R+G+ + ++L P+L CTHL+YA+AG++N +L T +
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSL--CTHLIYAFAGMTN---------HQLSTTEW 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLV 142
LY++ LK P L +L +GG+ +K+ D+V
Sbjct: 51 NDETLYQEFNGLKKMNPKLKTLLAIGGWN--FGTQKFTDMV 89
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 143 IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKG-NCGE-KYVLVKSAKHHL 189
+ + K +Y KQ GL G + L LDDF G +C + +Y L+++ + L
Sbjct: 316 VESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 364
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
K++CY+ + A R+G+ + ++L P+L CTHL+YA+AG++N +L T +
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSL--CTHLIYAFAGMTN---------HQLSTTEW 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLV 142
LY++ LK P L +L +GG+ +K+ D+V
Sbjct: 51 NDETLYQEFNGLKKMNPKLKTLLAIGGWN--FGTQKFTDMV 89
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 143 IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKG-NCGE-KYVLVKSAKHHL 189
+ + K +Y KQ GL G + L LDDF G +C + +Y L+++ + L
Sbjct: 316 VESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 364
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
K++CY+ + A R+G+ + ++L P+L CTHL+YA+AG++N +L T +
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSL--CTHLIYAFAGMTN---------HQLSTTEW 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLV 142
LY++ LK P L +L +GG+ +K+ D+V
Sbjct: 51 NDETLYQEFNGLKKMNPKLKTLLAIGGWN--FGTQKFTDMV 89
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 143 IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKG-NCGE-KYVLVKSAKHHL 189
+ + K +Y KQ GL G + L LDDF G +C + +Y L+++ + L
Sbjct: 316 VESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 364
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
K++CY+ + A R+G+ + ++L P+L CTHL+YA+AG++N +L T +
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSL--CTHLIYAFAGMTN---------HQLSTTEW 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLV 142
LY++ LK P L +L +GG+ +K+ D+V
Sbjct: 51 NDETLYQEFNGLKKMNPKLKTLLAIGGWN--FGTQKFTDMV 89
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 143 IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKG-NCGE-KYVLVKSAKHHL 189
+ + K +Y KQ GL G + L LDDF G +C + +Y L+++ + L
Sbjct: 316 VESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 364
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
K++CYY + REG G + + P L CTH++Y++A ISN+ E+DT +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFL--CTHVIYSFANISNN---------EIDTWEW 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGFE 130
LY + LK P+L +L VGG+
Sbjct: 51 NDVTLYDTLNTLKNRNPNLKTLLSVGGWN 79
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 145 TVGVKAAYAKQNGLAGVAMVDLSLDDFKGN-CGE 177
+V KA Y K LAG + L LDDF+G CG+
Sbjct: 311 SVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQ 344
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 11/88 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
K++CYY + REG G + + P L CTH++Y++A ISN+ E+DT +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFL--CTHVIYSFANISNN---------EIDTWEW 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGF 129
LY + LK P+L +L VGG+
Sbjct: 51 NDVTLYDTLNTLKNRNPNLKTLLSVGGW 78
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 145 TVGVKAAYAKQNGLAGVAMVDLSLDDFKGN-CGE 177
+V KA Y K LAG + L LDDF+G CG+
Sbjct: 311 SVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQ 344
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
K++CYY + REG G + + P L CTH++Y++A ISN+ E+DT +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFL--CTHVIYSFANISNN---------EIDTWEW 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGFE 130
LY + LK P+L +L VGG+
Sbjct: 51 NDVTLYDTLNTLKNRNPNLKTLLSVGGWN 79
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 145 TVGVKAAYAKQNGLAGVAMVDLSLDDFKGN-CGE 177
+V KA Y K LAG + L LDDF+G CG+
Sbjct: 311 SVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQ 344
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
K++CYY + REG G + + P L CTH++Y++A ISN+ E+DT +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFL--CTHVIYSFANISNN---------EIDTWEW 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGFE 130
LY + LK P+L +L VGG+
Sbjct: 51 NDVTLYDTLNTLKNRNPNLKTLLSVGGWN 79
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 145 TVGVKAAYAKQNGLAGVAMVDLSLDDFKGN-CGE 177
+V KA Y K LAG + L LDDF+G CG+
Sbjct: 311 SVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQ 344
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
K++CY+ + + R+ GK E + P L C+HL+Y++A I N+ IK + +
Sbjct: 3 KLVCYFTNWSQDRQEPGKFTPENIDPFL--CSHLIYSFASIENNKVIIKDKSEVM----- 55
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGF 129
LY+ + +LKT P L I+L +GG+
Sbjct: 56 ----LYQTINSLKTKNPKLKILLSIGGY 79
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
K++CYY + REG G + + P L CTH++Y++A ISN+ E+DT +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFL--CTHVIYSFANISNN---------EIDTWEW 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGF 129
LY + LK P L +L VGG+
Sbjct: 51 NDVTLYDTLNTLKNRNPKLKTLLSVGGW 78
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 145 TVGVKAAYAKQNGLAGVAMVDLSLDDFKGN-CGE 177
+V KA Y K LAG + L LDDF+G CG+
Sbjct: 311 SVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQ 344
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
K++CYY + REG G + + P L CTH++Y++A ISN+ E+DT +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFL--CTHVIYSFANISNN---------EIDTWEW 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGF 129
LY + LK P L +L VGG+
Sbjct: 51 NDVTLYDTLNTLKNRNPKLKTLLSVGGW 78
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 145 TVGVKAAYAKQNGLAGVAMVDLSLDDFKGN-CGE 177
+V KA Y K LAG + L LDDF+G CG+
Sbjct: 311 SVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQ 344
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
K++CYY + REG G + + P L CTH++Y++A ISN+ E+DT +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFL--CTHVIYSFANISNN---------EIDTWEW 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGF 129
LY + LK P L +L VGG+
Sbjct: 51 NDVTLYDTLNTLKNRNPKLKTLLSVGGW 78
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 145 TVGVKAAYAKQNGLAGVAMVDLSLDDFKGN-CGE 177
+V KA Y K LAG + L LDDF+G CG+
Sbjct: 311 SVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQ 344
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
K++CYY + REG G + + P L CTH++Y++A ISN+ E+DT +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFL--CTHVIYSFANISNN---------EIDTWEW 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGF 129
LY + LK P L +L VGG+
Sbjct: 51 NDVTLYDTLNTLKNRNPKLKTLLSVGGW 78
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 145 TVGVKAAYAKQNGLAGVAMVDLSLDDFKGN-CGE 177
+V KA Y K LAG + L LDDF+G CG+
Sbjct: 311 SVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQ 344
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
K++CYY + REG G + + P L CTH++Y +A ISN+ E+DT +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFL--CTHVIYTFANISNN---------EIDTWEW 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGF 129
LY + LK P L +L VGG+
Sbjct: 51 NDVTLYDTLNTLKNRNPKLKTLLSVGGW 78
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 145 TVGVKAAYAKQNGLAGVAMVDLSLDDFKGN-CGE 177
+V KA Y K LAG + L LDDF+G CG+
Sbjct: 311 SVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQ 344
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
K++CYY + REG G + L L CTH++Y++A ISN +DT +
Sbjct: 2 KLVCYYTSWSQYREGDGSCFPDALDRFL--CTHIIYSFANISND---------HIDTWEW 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGF 129
LY + LK P+L +L VGG+
Sbjct: 51 NDVTLYGMLNTLKNRNPNLKTLLSVGGW 78
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 14/65 (21%)
Query: 128 GFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGN-CGE--KYVLVKS 184
G++DQ+ +V K Y K LAG + L LDDF+G+ CG+ ++ L +
Sbjct: 306 GYDDQE-----------SVKSKVQYLKDRQLAGAMVWALDLDDFQGSFCGQDLRFPLTNA 354
Query: 185 AKHHL 189
K L
Sbjct: 355 IKDAL 359
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
++ CY+ + A R G G+ +++ P L CTHL+YA+AG+ N+ E+ T +
Sbjct: 2 QLTCYFTNWAQYRPGLGRFMPDDINPCL--CTHLIYAFAGMQNN---------EITTIEW 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGF 129
LY+ LK L +L +GG+
Sbjct: 51 NDVTLYQAFNGLKNKNSQLKTLLAIGGW 78
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 143 IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGN-CGE-KYVLVKSAKHHL 189
+ + +KA + K N G + + LDDF G C + K+ L+ + K L
Sbjct: 318 VKSFDIKAQWLKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKAL 366
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
++ CY+ + A R G G+ +++ P L CTHL+YA+AG+ N+ E+ T +
Sbjct: 6 QLTCYFTNWAQYRPGLGRFMPDDINPCL--CTHLIYAFAGMQNN---------EITTIEW 54
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGF 129
LY+ LK L +L +GG+
Sbjct: 55 NDVTLYQAFNGLKNKNSQLKTLLAIGGW 82
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 143 IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGN-CGE-KYVLVKSAKHHL 189
I + +KA + K N G + + LDDF G C + K+ L+ + K L
Sbjct: 322 IKSFDIKAQWLKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKAL 370
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
+++CYY A R +G + P L CTHL+YA+AG+ N+ E+
Sbjct: 2 QLMCYYTSWAKDRPIEGSFKPGNIDPCL--CTHLIYAFAGMQNN---------EITYTHE 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGFE 130
+ Y+ + LK +L +L +GG++
Sbjct: 51 QDLRDYEALNGLKDKNTELKTLLAIGGWK 79
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 143 IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGN-CGEKYVLVKSA 185
+ + +KA + K N L G + L +DDF G+ C +++ + S
Sbjct: 318 VRSFKLKAQWLKDNNLGGAVVWPLDMDDFSGSFCHQRHFPLTST 361
>pdb|2XR8|A Chain A, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|C Chain C, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|E Chain E, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|G Chain G, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|I Chain I, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|K Chain K, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|M Chain M, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|O Chain O, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|S Chain S, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|U Chain U, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|W Chain W, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XRX|A Chain A, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|C Chain C, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|E Chain E, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|G Chain G, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|I Chain I, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|K Chain K, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|M Chain M, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|O Chain O, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|S Chain S, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|U Chain U, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|W Chain W, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
Length = 459
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 113 LKTSYPDLNII-LGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDF 171
+K Y NI GG +Q D E ++++ G KA N G+ DF
Sbjct: 366 IKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPLNAQMGLGRSQTGHPDF 425
Query: 172 KGNCGEKYV--LVKSAKHHL 189
GN G Y + HH
Sbjct: 426 PGNVGYVYAEEAARGMYHHW 445
>pdb|2XSH|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSO|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|M Chain M, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|O Chain O, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|Q Chain Q, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|S Chain S, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|U Chain U, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|W Chain W, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
Length = 459
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 113 LKTSYPDLNII-LGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDF 171
+K Y NI GG +Q D E ++++ G KA N G+ DF
Sbjct: 366 IKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPLNAQMGLGRSQTGHPDF 425
Query: 172 KGNCGEKYV--LVKSAKHHL 189
GN G Y + HH
Sbjct: 426 PGNVGYVYAEEAARGMYHHW 445
>pdb|2YFI|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFJ|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFL|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
Length = 459
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 113 LKTSYPDLNII-LGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDF 171
+K Y NI GG +Q D E ++++ G KA N G+ DF
Sbjct: 366 IKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPFNAQMGLGRSQTGHPDF 425
Query: 172 KGNCGEKYV--LVKSAKHHL 189
GN G Y + HH
Sbjct: 426 PGNVGYVYAEEAARGMYHHW 445
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 73 THLVYAYAGISNSDYHIKSLDKELDTDKN--------KGHELY---KQVTALKTSYPDLN 121
TH++YA+A I S + D DTDK+ G+ +Y KQ+ LK + +L
Sbjct: 30 THILYAFANIRPSG-EVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLLKKNNRNLK 88
Query: 122 IILGVGGF 129
+L +GG+
Sbjct: 89 TLLSIGGW 96
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 73 THLVYAYAGISNSDYHIKSLDKELDTDKN--------KGHELY---KQVTALKTSYPDLN 121
TH++YA+A I S + D DTDK+ G+ +Y KQ+ LK + +L
Sbjct: 30 THILYAFANIRPSG-EVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLLKKNNRNLK 88
Query: 122 IILGVGGF 129
+L +GG+
Sbjct: 89 TLLSIGGW 96
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 73 THLVYAYAGISNSDYHIKSLDKELDTDKN--------KGHELY---KQVTALKTSYPDLN 121
TH++YA+A I S + D DTDK+ G+ +Y KQ+ LK + +L
Sbjct: 30 THILYAFANIRPSG-EVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLLKKNNRNLK 88
Query: 122 IILGVGGF 129
+L +GG+
Sbjct: 89 TLLSIGGW 96
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 76 VYAYAGISNSDYHIKSLDKELDTDKNKGH--ELYKQVT 111
V ++G++ + +KSL+ + TDKNK H ++KQV
Sbjct: 197 VPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVV 234
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 13/63 (20%)
Query: 129 FEDQKDKEK-YLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGEKYVLVKSAKH 187
FED++ K +L+ V Y + NG A + DLSLD+FK ++++ A
Sbjct: 22 FEDEEAARKNFLESV--------KYVQSNGGAINHLSDLSLDEFKN----RFLMSAEAFE 69
Query: 188 HLK 190
HLK
Sbjct: 70 HLK 72
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 98 TDKNKGHELYKQVTALKTSYPDLNIILGVGGF 129
T+ K ++ ++TALK P L I+ +GG+
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGW 97
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 98 TDKNKGHELYKQVTALKTSYPDLNIILGVGGF 129
T+ K ++ ++TALK P L I+ +GG+
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGW 97
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 98 TDKNKGHELYKQVTALKTSYPDLNIILGVGGF 129
T+ K ++ ++TALK P L I+ +GG+
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGW 97
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 98 TDKNKGHELYKQVTALKTSYPDLNIILGVGGF 129
T+ K ++ ++TALK P L I+ +GG+
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGW 97
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 98 TDKNKGHELYKQVTALKTSYPDLNIILGVGGF 129
T+ K ++ ++TALK P L I+ +GG+
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGW 97
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 99 DKNKGHELYKQVTALKTSYPDLNIILGVGGF 129
D KG+ + Q+ ALK ++PDL I+ +GG+
Sbjct: 247 DPYKGN--FGQLMALKQAHPDLKILPSIGGW 275
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 98 TDKNKGHELYKQVTALKTSYPDLNIILGVGGF 129
T+ K ++ ++TALK P L I+ +GG+
Sbjct: 65 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGW 96
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 98 TDKNKGHELYKQVTALKTSYPDLNIILGVGGF 129
T+ K ++ ++TALK P L I+ +GG+
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGW 97
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 99 DKNKGHELYKQVTALKTSYPDLNIILGVGGF 129
D KG+ + Q+ ALK ++PDL I+ +GG+
Sbjct: 224 DPYKGN--FGQLMALKQAHPDLKILPSIGGW 252
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 99 DKNKGHELYKQVTALKTSYPDLNIILGVGGF 129
D KG+ + Q+ ALK ++PDL I+ +GG+
Sbjct: 224 DPYKGN--FGQLMALKQAHPDLKILPSIGGW 252
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 99 DKNKGHELYKQVTALKTSYPDLNIILGVGGF 129
D KG+ + Q+ ALK ++PDL I+ +GG+
Sbjct: 224 DPYKGN--FGQLMALKQAHPDLKILPSIGGW 252
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 99 DKNKGHELYKQVTALKTSYPDLNIILGVGGF 129
D KG+ + Q+ ALK ++PDL I+ +GG+
Sbjct: 224 DPYKGN--FGQLMALKQAHPDLKILPSIGGW 252
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 99 DKNKGHELYKQVTALKTSYPDLNIILGVGGF 129
D KG+ + Q+ ALK ++PDL I+ +GG+
Sbjct: 224 DPYKGN--FGQLMALKQAHPDLKILPSIGGW 252
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 99 DKNKGHELYKQVTALKTSYPDLNIILGVGGF 129
D KG+ + Q+ ALK ++PDL I+ +GG+
Sbjct: 224 DPYKGN--FGQLMALKQAHPDLKILPSIGGW 252
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 99 DKNKGHELYKQVTALKTSYPDLNIILGVGGF 129
D KG+ + Q+ ALK ++PDL I+ +GG+
Sbjct: 224 DPYKGN--FGQLMALKQAHPDLKILPSIGGW 252
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 99 DKNKGHELYKQVTALKTSYPDLNIILGVGGF 129
D KG+ + Q+ ALK ++PDL I+ +GG+
Sbjct: 224 DPYKGN--FGQLMALKQAHPDLKILPSIGGW 252
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 99 DKNKGHELYKQVTALKTSYPDLNIILGVGGF 129
D KG+ + Q+ ALK ++PDL I+ +GG+
Sbjct: 224 DPYKGN--FGQLMALKQAHPDLKILPSIGGW 252
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 73 THLVYAYAGISNSDYHIKSLDKELDTDK--------NKGHELY---KQVTALKTSYPDLN 121
TH++YA+A + + D D +K + G+ +Y KQ+ LK +L
Sbjct: 70 THVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNLK 129
Query: 122 IILGVGGF 129
++L +GG+
Sbjct: 130 VLLSIGGW 137
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 72 CTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELY---------KQVTALKTSYPDLNI 122
THL Y++ I N + K D HE++ +++ AL+ PDL +
Sbjct: 54 ITHLNYSFGLIYNDE---KDETNAALKDPAHLHEIWLSPKVQADLQKLPALRKQNPDLKV 110
Query: 123 ILGVGGF 129
+L VGG+
Sbjct: 111 LLSVGGW 117
>pdb|3LKU|A Chain A, Crystal Structure Of S. Cerevisiae Get4 In Complex With An
N-Terminal Fragment Of Get5
pdb|3LKU|C Chain C, Crystal Structure Of S. Cerevisiae Get4 In Complex With An
N-Terminal Fragment Of Get5
pdb|3LKU|E Chain E, Crystal Structure Of S. Cerevisiae Get4 In Complex With An
N-Terminal Fragment Of Get5
Length = 292
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 73 THLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQV------TALKTSYPDLNIILGV 126
+ LV+ Y ISN + +S D L+ K H Y+++ Y DLN + +
Sbjct: 184 SRLVFNYLFISNISFAHESKDIFLERFIEKFHPKYEKIDKNGYEIVFFEDYSDLNFLQLL 243
Query: 127 GGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAG 160
KDK +L+L H + AY + G
Sbjct: 244 LITCQTKDKSYFLNLKNHYLDFSQAYKSELEFLG 277
>pdb|3IZR|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins
Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
Translating 80s Ribosome
Length = 244
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 39 PPKKILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKEL 96
P K IL E + E K KVA E+++ A T ++YA A +Y + DKEL
Sbjct: 11 PEKVILKRRREEVWAAEKKQKVAAEKIKAA--ENTKVIYARAEQYAGEYE--AQDKEL 64
>pdb|2WPV|A Chain A, Crystal Structure Of S. Cerevisiae Get4-Get5 Complex
pdb|2WPV|C Chain C, Crystal Structure Of S. Cerevisiae Get4-Get5 Complex
pdb|2WPV|E Chain E, Crystal Structure Of S. Cerevisiae Get4-Get5 Complex
pdb|2WPV|G Chain G, Crystal Structure Of S. Cerevisiae Get4-Get5 Complex
Length = 312
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 73 THLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQV------TALKTSYPDLNIILGV 126
+ LV+ Y ISN + +S D L+ K H Y+++ Y DLN + +
Sbjct: 192 SRLVFNYLFISNISFAHESKDIFLERFIEKFHPKYEKIDKNGYEIVFFEDYSDLNFLQLL 251
Query: 127 GGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAG 160
KDK +L+L H + AY + G
Sbjct: 252 LITCQTKDKSYFLNLKNHYLDFSQAYKSELEFLG 285
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 72 CTHLVYAYAGISNSDYHIKSLDKELDTDK--------NKGHELY---KQVTALKTSYPDL 120
TH++YA+A + + D D +K + G+ +Y KQ+ LK +L
Sbjct: 31 LTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNL 90
Query: 121 NIILGVGGF 129
++L +GG+
Sbjct: 91 KVLLSIGGW 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,044,428
Number of Sequences: 62578
Number of extensions: 257148
Number of successful extensions: 663
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 559
Number of HSP's gapped (non-prelim): 88
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)