Query psy13762
Match_columns 190
No_of_seqs 165 out of 1302
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 19:51:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02873 GH18_IDGF The IDGF's ( 100.0 3.9E-35 8.5E-40 258.4 13.3 122 42-170 1-134 (413)
2 COG3325 ChiA Chitinase [Carboh 100.0 5.7E-33 1.2E-37 239.5 12.6 141 35-189 32-207 (441)
3 cd02872 GH18_chitolectin_chito 100.0 1.4E-31 3E-36 231.7 12.6 136 43-190 1-148 (362)
4 cd02879 GH18_plant_chitinase_c 100.0 2.4E-30 5.1E-35 219.4 12.6 128 41-190 3-140 (299)
5 cd06548 GH18_chitinase The GH1 100.0 1.6E-30 3.4E-35 222.3 11.1 137 43-190 1-166 (322)
6 cd02878 GH18_zymocin_alpha Zym 100.0 1.7E-28 3.6E-33 211.8 12.2 129 42-190 1-149 (345)
7 smart00636 Glyco_18 Glycosyl h 99.9 6.3E-27 1.4E-31 200.3 11.9 131 42-190 1-140 (334)
8 cd06546 GH18_CTS3_chitinase GH 99.9 7E-26 1.5E-30 188.3 14.3 134 42-189 1-140 (256)
9 KOG2806|consensus 99.9 7.4E-26 1.6E-30 200.5 9.7 135 41-190 52-196 (432)
10 PF00704 Glyco_hydro_18: Glyco 99.9 3.8E-25 8.2E-30 188.8 10.3 136 41-190 1-150 (343)
11 cd06544 GH18_narbonin Narbonin 99.9 7.1E-25 1.5E-29 181.8 10.9 118 60-190 13-143 (253)
12 cd00598 GH18_chitinase-like Th 99.9 2.8E-23 6E-28 166.2 13.4 132 43-190 1-138 (210)
13 cd06545 GH18_3CO4_chitinase Th 99.9 3.8E-22 8.3E-27 165.3 13.2 124 43-190 1-129 (253)
14 cd02876 GH18_SI-CLP Stabilin-1 99.9 1.1E-22 2.4E-27 173.6 9.1 126 42-190 4-144 (318)
15 cd02871 GH18_chitinase_D-like 99.9 1.1E-21 2.3E-26 167.4 13.8 135 41-189 1-145 (312)
16 cd02874 GH18_CFLE_spore_hydrol 99.6 2E-15 4.3E-20 128.5 9.4 122 42-190 3-134 (313)
17 cd06542 GH18_EndoS-like Endo-b 99.6 4E-15 8.7E-20 123.2 10.8 130 42-189 2-141 (255)
18 cd06543 GH18_PF-ChiA-like PF-C 99.5 1.3E-13 2.9E-18 116.8 10.8 108 71-189 25-137 (294)
19 cd06549 GH18_trifunctional GH1 99.5 1.5E-13 3.3E-18 116.5 8.5 125 43-190 2-135 (298)
20 cd02875 GH18_chitobiase Chitob 99.4 2.9E-12 6.3E-17 111.4 11.4 112 38-190 33-146 (358)
21 cd02877 GH18_hevamine_XipI_cla 99.3 4.1E-11 8.9E-16 101.0 10.5 108 71-189 24-148 (280)
22 COG3469 Chitinase [Carbohydrat 99.1 2.9E-10 6.3E-15 93.2 9.8 135 38-189 23-167 (332)
23 cd02872 GH18_chitolectin_chito 97.0 0.0013 2.7E-08 57.1 5.7 47 143-189 315-362 (362)
24 KOG4701|consensus 96.8 0.018 4E-07 50.4 10.7 18 114-132 99-116 (568)
25 cd02873 GH18_IDGF The IDGF's ( 96.7 0.0034 7.4E-08 55.8 5.8 47 143-189 366-413 (413)
26 cd06547 GH85_ENGase Endo-beta- 96.2 0.014 2.9E-07 50.8 6.3 75 110-190 51-136 (339)
27 PF03644 Glyco_hydro_85: Glyco 94.8 0.032 6.8E-07 47.9 3.7 74 110-189 47-131 (311)
28 KOG2091|consensus 93.5 0.29 6.3E-06 42.1 6.8 102 41-164 79-191 (392)
29 TIGR01370 cysRS possible cyste 87.6 1 2.2E-05 38.8 4.8 17 150-166 153-169 (315)
30 cd02810 DHOD_DHPD_FMN Dihydroo 84.7 6.6 0.00014 32.8 8.3 71 106-188 85-160 (289)
31 cd04740 DHOD_1B_like Dihydroor 84.2 3.8 8.3E-05 34.4 6.6 52 105-169 76-127 (296)
32 COG3858 Predicted glycosyl hyd 83.3 2.5 5.4E-05 37.7 5.2 43 143-190 196-238 (423)
33 PRK07565 dihydroorotate dehydr 80.3 14 0.00031 31.7 8.9 70 107-189 90-164 (334)
34 KOG2806|consensus 77.9 2.4 5.2E-05 38.0 3.4 47 143-189 371-420 (432)
35 cd02940 DHPD_FMN Dihydropyrimi 75.4 30 0.00064 29.3 9.3 53 107-170 87-139 (299)
36 cd02801 DUS_like_FMN Dihydrour 74.3 9.3 0.0002 30.5 5.7 41 116-168 51-91 (231)
37 PLN02495 oxidoreductase, actin 74.0 27 0.00058 31.0 8.8 55 105-170 99-153 (385)
38 cd06545 GH18_3CO4_chitinase Th 73.0 3.8 8.2E-05 33.7 3.1 60 115-185 193-253 (253)
39 PRK07259 dihydroorotate dehydr 71.9 23 0.0005 29.8 7.8 69 107-188 80-155 (301)
40 cd02875 GH18_chitobiase Chitob 70.6 9.2 0.0002 33.3 5.2 34 143-176 313-346 (358)
41 TIGR00542 hxl6Piso_put hexulos 65.8 10 0.00023 31.3 4.4 18 150-167 22-39 (279)
42 cd04739 DHOD_like Dihydroorota 65.8 59 0.0013 27.9 9.1 70 107-189 88-162 (325)
43 PF14871 GHL6: Hypothetical gl 65.1 8.7 0.00019 28.7 3.4 26 137-165 107-132 (132)
44 PF02057 Glyco_hydro_59: Glyco 65.0 10 0.00022 36.0 4.4 72 109-189 117-197 (669)
45 PF02638 DUF187: Glycosyl hydr 64.8 9.5 0.0002 32.7 4.0 24 143-169 143-167 (311)
46 PRK14706 glycogen branching en 64.2 11 0.00023 35.7 4.5 44 143-189 288-345 (639)
47 PF07172 GRP: Glycine rich pro 63.7 9.2 0.0002 27.1 3.1 20 2-21 4-23 (95)
48 PRK03958 tRNA 2'-O-methylase; 63.2 17 0.00037 28.7 4.8 45 119-169 103-159 (176)
49 PRK08318 dihydropyrimidine deh 60.2 79 0.0017 28.0 9.1 51 108-169 88-138 (420)
50 PRK12568 glycogen branching en 59.2 15 0.00032 35.4 4.5 46 142-190 389-450 (730)
51 PRK05402 glycogen branching en 58.8 15 0.00032 35.2 4.5 20 142-164 385-404 (726)
52 cd06546 GH18_CTS3_chitinase GH 57.6 31 0.00066 28.6 5.7 50 114-169 203-255 (256)
53 PRK03995 hypothetical protein; 56.7 93 0.002 26.2 8.4 42 118-165 179-242 (267)
54 PRK02506 dihydroorotate dehydr 56.6 49 0.0011 28.2 7.0 70 106-188 79-155 (310)
55 TIGR00737 nifR3_yhdG putative 56.5 42 0.00091 28.6 6.5 40 118-169 61-100 (319)
56 PRK11815 tRNA-dihydrouridine s 54.7 29 0.00062 29.9 5.3 40 118-169 63-102 (333)
57 PRK12313 glycogen branching en 54.0 25 0.00054 33.1 5.1 20 142-164 290-309 (633)
58 COG3325 ChiA Chitinase [Carboh 53.5 11 0.00025 33.8 2.6 40 143-189 397-436 (441)
59 cd04747 OYE_like_5_FMN Old yel 53.3 20 0.00043 31.4 4.1 18 150-167 150-167 (361)
60 cd02933 OYE_like_FMN Old yello 52.6 23 0.0005 30.6 4.4 39 150-188 158-215 (338)
61 cd02929 TMADH_HD_FMN Trimethyl 50.6 28 0.0006 30.5 4.6 18 150-167 156-173 (370)
62 PRK13523 NADPH dehydrogenase N 50.2 26 0.00056 30.4 4.2 17 150-166 148-164 (337)
63 TIGR03849 arch_ComA phosphosul 49.5 47 0.001 27.5 5.4 52 104-165 40-92 (237)
64 TIGR01037 pyrD_sub1_fam dihydr 48.1 69 0.0015 26.8 6.5 57 119-188 90-155 (300)
65 TIGR00742 yjbN tRNA dihydrouri 48.0 30 0.00065 29.7 4.3 42 117-170 52-93 (318)
66 KOG0781|consensus 48.0 1.4E+02 0.003 27.7 8.5 36 143-187 455-490 (587)
67 PRK14705 glycogen branching en 47.9 28 0.0006 35.6 4.5 45 142-189 885-945 (1224)
68 cd00598 GH18_chitinase-like Th 46.9 23 0.00049 27.6 3.2 23 144-167 185-207 (210)
69 TIGR01515 branching_enzym alph 45.3 35 0.00077 32.0 4.6 21 142-165 276-296 (613)
70 cd02931 ER_like_FMN Enoate red 45.1 33 0.00071 30.2 4.2 16 150-165 156-171 (382)
71 PRK13209 L-xylulose 5-phosphat 42.9 39 0.00085 27.7 4.2 15 150-164 27-41 (283)
72 PF02679 ComA: (2R)-phospho-3- 42.8 30 0.00065 28.8 3.3 53 104-165 53-105 (244)
73 cd02879 GH18_plant_chitinase_c 42.2 38 0.00082 28.6 4.0 52 114-166 224-289 (299)
74 cd04735 OYE_like_4_FMN Old yel 40.9 37 0.00079 29.5 3.8 16 150-165 150-165 (353)
75 cd06548 GH18_chitinase The GH1 40.5 32 0.0007 29.2 3.4 23 143-166 296-318 (322)
76 cd02878 GH18_zymocin_alpha Zym 40.3 33 0.00072 29.6 3.4 22 143-164 319-340 (345)
77 cd04733 OYE_like_2_FMN Old yel 40.3 37 0.00081 29.1 3.7 40 150-189 155-213 (338)
78 PF01136 Peptidase_U32: Peptid 40.2 94 0.002 24.8 5.9 48 106-167 23-70 (233)
79 cd04741 DHOD_1A_like Dihydroor 39.4 1.5E+02 0.0032 25.0 7.2 70 106-189 76-156 (294)
80 PF11909 NdhN: NADH-quinone ox 38.7 32 0.00069 26.4 2.6 27 105-131 119-145 (154)
81 cd02876 GH18_SI-CLP Stabilin-1 36.9 36 0.00079 28.8 3.1 22 143-166 285-306 (318)
82 PRK13210 putative L-xylulose 5 36.7 64 0.0014 26.4 4.5 15 150-164 22-36 (284)
83 smart00636 Glyco_18 Glycosyl h 36.5 43 0.00092 28.4 3.5 22 143-164 308-329 (334)
84 PF00704 Glyco_hydro_18: Glyco 36.3 45 0.00097 28.0 3.6 22 143-164 317-338 (343)
85 cd02930 DCR_FMN 2,4-dienoyl-Co 36.2 53 0.0011 28.4 4.0 40 150-189 143-201 (353)
86 PRK02624 psbH photosystem II r 35.4 43 0.00092 21.8 2.4 37 127-166 23-63 (64)
87 PF08885 GSCFA: GSCFA family; 35.1 46 0.00099 27.7 3.3 21 107-127 154-175 (251)
88 TIGR02103 pullul_strch alpha-1 34.8 89 0.0019 31.0 5.6 23 140-165 475-497 (898)
89 PRK15364 pathogenicity island 34.8 36 0.00079 27.0 2.5 20 143-165 100-121 (196)
90 PF00724 Oxidored_FMN: NADH:fl 34.7 48 0.001 28.6 3.5 39 150-188 155-212 (341)
91 KOG4824|consensus 34.6 95 0.0021 25.2 4.8 65 4-80 8-75 (224)
92 PRK10802 peptidoglycan-associa 34.3 1.7E+02 0.0038 22.7 6.4 52 104-160 85-140 (173)
93 KOG2796|consensus 34.1 53 0.0011 28.2 3.5 32 150-181 90-122 (366)
94 PF08194 DIM: DIM protein; In 33.4 40 0.00087 19.5 1.9 13 1-13 1-14 (36)
95 PF02055 Glyco_hydro_30: O-Gly 33.1 85 0.0018 28.8 5.0 58 107-167 156-228 (496)
96 PF12138 Spherulin4: Spherulat 32.7 2.4E+02 0.0051 23.4 7.2 54 105-164 54-113 (253)
97 cd02932 OYE_YqiM_FMN Old yello 32.3 68 0.0015 27.5 4.1 16 150-165 160-175 (336)
98 PLN02411 12-oxophytodienoate r 32.2 66 0.0014 28.5 4.0 39 150-188 171-228 (391)
99 cd06549 GH18_trifunctional GH1 31.7 69 0.0015 27.0 3.9 24 143-167 267-290 (298)
100 PRK10605 N-ethylmaleimide redu 31.4 67 0.0015 28.1 3.9 39 150-188 165-222 (362)
101 cd02874 GH18_CFLE_spore_hydrol 31.4 59 0.0013 27.4 3.5 23 143-166 279-301 (313)
102 PF03537 Glyco_hydro_114: Glyc 31.3 33 0.00071 22.9 1.5 12 39-50 48-59 (74)
103 PF05047 L51_S25_CI-B8: Mitoch 30.8 45 0.00097 20.2 2.0 18 109-126 8-25 (52)
104 PF14885 GHL15: Hypothetical g 30.5 75 0.0016 21.6 3.2 27 136-165 49-75 (79)
105 TIGR03234 OH-pyruv-isom hydrox 29.6 65 0.0014 26.0 3.4 16 150-165 20-35 (254)
106 TIGR02104 pulA_typeI pullulana 29.5 1.4E+02 0.003 28.0 5.9 23 140-165 298-320 (605)
107 TIGR01233 lacG 6-phospho-beta- 28.7 1.8E+02 0.0039 26.4 6.3 52 103-165 91-155 (467)
108 PRK10550 tRNA-dihydrouridine s 28.0 1.8E+02 0.0038 24.9 5.8 39 119-169 62-100 (312)
109 cd04734 OYE_like_3_FMN Old yel 27.6 70 0.0015 27.7 3.3 16 150-165 147-162 (343)
110 PRK14340 (dimethylallyl)adenos 27.2 1.6E+02 0.0035 26.4 5.7 48 105-164 284-335 (445)
111 PF14443 DBC1: DBC1 26.8 79 0.0017 23.6 3.0 37 122-163 18-58 (126)
112 cd02803 OYE_like_FMN_family Ol 26.5 93 0.002 26.3 3.9 16 150-165 147-162 (327)
113 COG5567 Predicted small peripl 26.4 79 0.0017 20.1 2.5 19 3-21 5-23 (58)
114 PRK14866 hypothetical protein; 26.2 2.2E+02 0.0048 25.9 6.3 43 118-166 183-246 (451)
115 KOG3035|consensus 26.2 2.6E+02 0.0056 23.2 6.1 58 104-165 99-172 (245)
116 PF13200 DUF4015: Putative gly 25.6 1.6E+02 0.0035 25.4 5.1 33 137-169 117-150 (316)
117 PRK12677 xylose isomerase; Pro 25.5 96 0.0021 27.4 3.9 17 150-166 37-53 (384)
118 PRK14327 (dimethylallyl)adenos 24.1 1.9E+02 0.0042 26.6 5.7 48 105-164 348-399 (509)
119 PRK14338 (dimethylallyl)adenos 24.0 2E+02 0.0044 25.9 5.7 54 105-168 291-346 (459)
120 PF04414 tRNA_deacylase: D-ami 23.8 4E+02 0.0086 21.6 8.0 53 108-166 115-190 (213)
121 TIGR00736 nifR3_rel_arch TIM-b 23.7 4.1E+02 0.0089 21.7 7.0 45 109-169 60-104 (231)
122 TIGR02102 pullulan_Gpos pullul 23.5 1.3E+02 0.0029 30.6 4.7 25 138-165 619-643 (1111)
123 PRK06934 flavodoxin; Provision 23.1 1.2E+02 0.0026 24.8 3.7 15 37-51 33-47 (221)
124 TIGR03789 pdsO proteobacterial 23.1 3.3E+02 0.0071 22.5 6.3 56 104-164 151-210 (239)
125 PF02065 Melibiase: Melibiase; 22.9 2E+02 0.0043 25.6 5.4 44 143-189 172-225 (394)
126 PF07582 AP_endonuc_2_N: AP en 22.8 98 0.0021 19.6 2.5 19 150-168 6-25 (55)
127 PF02402 Lysis_col: Lysis prot 22.6 70 0.0015 19.4 1.7 21 1-21 1-21 (46)
128 PRK09495 glnH glutamine ABC tr 22.5 1.4E+02 0.003 23.7 4.1 23 1-23 1-23 (247)
129 COG0042 tRNA-dihydrouridine sy 22.5 2.4E+02 0.0051 24.3 5.6 45 105-164 184-228 (323)
130 COG1902 NemA NADH:flavin oxido 22.1 98 0.0021 27.2 3.2 16 150-165 155-170 (363)
131 PF13199 Glyco_hydro_66: Glyco 21.7 1.1E+02 0.0024 28.6 3.6 49 138-189 242-299 (559)
132 TIGR02802 Pal_lipo peptidoglyc 21.6 2.8E+02 0.006 19.0 6.4 53 104-161 16-72 (104)
133 PRK14335 (dimethylallyl)adenos 21.1 2.8E+02 0.0061 24.9 6.1 52 105-166 294-347 (455)
134 PRK09810 entericidin A; Provis 21.1 1.1E+02 0.0024 18.2 2.3 22 1-22 2-23 (41)
135 PF11340 DUF3142: Protein of u 21.0 71 0.0015 25.4 1.9 29 157-189 42-71 (181)
136 PF10836 DUF2574: Protein of u 20.8 41 0.00088 23.5 0.5 26 1-26 1-26 (93)
137 PF06309 Torsin: Torsin; Inte 20.8 2.7E+02 0.0059 20.7 4.9 39 107-146 38-77 (127)
138 PRK08255 salicylyl-CoA 5-hydro 20.7 1.4E+02 0.003 28.8 4.2 17 150-166 557-573 (765)
139 PF03102 NeuB: NeuB family; I 20.5 3.9E+02 0.0086 22.0 6.4 67 106-189 102-171 (241)
140 PF01207 Dus: Dihydrouridine s 20.5 1.3E+02 0.0028 25.6 3.6 45 113-169 47-91 (309)
141 PRK14336 (dimethylallyl)adenos 20.4 2.3E+02 0.0049 25.2 5.3 51 105-167 260-314 (418)
142 PRK14330 (dimethylallyl)adenos 20.3 2.1E+02 0.0046 25.4 5.1 51 105-165 276-328 (434)
No 1
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=3.9e-35 Score=258.38 Aligned_cols=122 Identities=43% Similarity=0.808 Sum_probs=107.2
Q ss_pred eEEEEEcCCccccCCCCCCCCccCCCCCCCccEEEEeeeeeeCCCceeeecCccccccccchhhHHHHHHHHHHhCCCce
Q psy13762 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDLN 121 (190)
Q Consensus 42 ~vv~Yy~~w~~~r~g~~~~~~~~i~~~~~~~THiiyaf~~i~~~~~~i~~~d~~~d~~~~~~~~~~~~l~~lk~~np~lK 121 (190)
++||||++|+.||.|.++|+|++||+.+++||||+|||++|+++++++...+++.|.+ .+.+++|..||++||++|
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~lk~~~p~lK 76 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLD----KSHYRAITSLKRKYPHLK 76 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchh----hhHHHHHHHHHhhCCCCe
Confidence 5899999999999999999999999974459999999999999878888888777654 577999999999999999
Q ss_pred EEEEecCCCCCCC---hhHhHHHH---------HHHHHHHHHHHHhcCCCeEEeecCCCCC
Q psy13762 122 IILGVGGFEDQKD---KEKYLDLV---------IHTVGVKAAYAKQNGLAGVAMVDLSLDD 170 (190)
Q Consensus 122 vllSvGGw~~~~~---s~~fs~~~---------i~si~~~~~fl~~~gfDGIDIDWeyp~~ 170 (190)
+|+|||||+.++. +..|+.++ ++++ ++|+++|+|||||||||||..
T Consensus 77 vllSiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~si---v~~l~~~~fDGidiDWEyP~~ 134 (413)
T cd02873 77 VLLSVGGDRDTDEEGENEKYLLLLESSESRNAFINSA---HSLLKTYGFDGLDLAWQFPKN 134 (413)
T ss_pred EEEeecCCCCCCCcccchhhHHHhCCHHHHHHHHHHH---HHHHHHcCCCCeEeeeeCCCC
Confidence 9999999986432 46788775 7777 999999999999999999963
No 2
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-33 Score=239.54 Aligned_cols=141 Identities=18% Similarity=0.297 Sum_probs=114.9
Q ss_pred CCCCCCCeEEEEEcCCccccCCCCCCCCccCCCCCCCccEEEEeeeeeeCCCc------------------eeeecCccc
Q psy13762 35 EDNPPPKKILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDY------------------HIKSLDKEL 96 (190)
Q Consensus 35 ~~~~~~~~vv~Yy~~w~~~r~g~~~~~~~~i~~~~~~~THiiyaf~~i~~~~~------------------~i~~~d~~~ 96 (190)
.....++||++||.+|+.|.+ ..|.|.+||.. .+|||+|||+.|..++. +...+|||.
T Consensus 32 ~~~d~~~rvvgYY~sWs~~d~--~~y~~~DIp~~--qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~ 107 (441)
T COG3325 32 HTSDDQFKVVGYYTSWSQYDR--QDYFPGDIPLD--QLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWS 107 (441)
T ss_pred cCCCCCceEEEEecccccCCC--cccccccCCHH--HhceeeEEEEEecCCCCccccccccchhhccccCcCceeecccc
Confidence 345677899999999999976 46889999998 89999999999998752 122355555
Q ss_pred cccccchhhHHHHHHHHHHhCCCceEEEEecCCCCCCChhHhHHHH---------HHHHHHHHHHHHhcCCCeEEeecCC
Q psy13762 97 DTDKNKGHELYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLV---------IHTVGVKAAYAKQNGLAGVAMVDLS 167 (190)
Q Consensus 97 d~~~~~~~~~~~~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~---------i~si~~~~~fl~~~gfDGIDIDWey 167 (190)
+.. ++.+..|..||+++|++|+++|||||+. |..|+.|+ ++|+ ++|+++|+||||||||||
T Consensus 108 ~~~----~G~~~~L~~lk~~~~d~k~l~SIGGWs~---S~~F~~~aad~a~re~Fa~sa---Ve~~r~~~FDGVDIDWEY 177 (441)
T COG3325 108 DPL----KGHFGALFDLKATYPDLKTLISIGGWSD---SGGFSDMAADDASRENFAKSA---VEFMRTYGFDGVDIDWEY 177 (441)
T ss_pred ccc----cchHHHHHHHhhhCCCceEEEeeccccc---CCCcchhhcCHHHHHHHHHHH---HHHHHhcCCCceeecccc
Confidence 422 6889999999999999999999999999 67777664 8888 999999999999999999
Q ss_pred CCCCCCCCC--------CcchHHHHHHhhc
Q psy13762 168 LDDFKGNCG--------EKYVLVKSAKHHL 189 (190)
Q Consensus 168 p~~~~g~~~--------~~~~ll~~ir~~l 189 (190)
|..-.+.++ ++..||++||++|
T Consensus 178 P~~~~~~~~~~~~~d~~ny~~Ll~eLR~~L 207 (441)
T COG3325 178 PGSGGDAGNCGRPKDKANYVLLLQELRKKL 207 (441)
T ss_pred CCCCCCCCCCCCcccHHHHHHHHHHHHHHH
Confidence 975433322 1346899999987
No 3
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=99.97 E-value=1.4e-31 Score=231.70 Aligned_cols=136 Identities=29% Similarity=0.524 Sum_probs=114.9
Q ss_pred EEEEEcCCccccCCCCCCCCccCCCCCCCccEEEEeeeeeeCCCceeeecCccccccccchhhHHHHHHHHHHhCCCceE
Q psy13762 43 ILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDLNI 122 (190)
Q Consensus 43 vv~Yy~~w~~~r~g~~~~~~~~i~~~~~~~THiiyaf~~i~~~~~~i~~~d~~~d~~~~~~~~~~~~l~~lk~~np~lKv 122 (190)
|+|||++|+.||+|.+.|.+++||.+ +||||+|+|++++.+ +++...+++.|.+ .+.+++|.+||++||++||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~--~~Thv~y~f~~i~~~-g~~~~~~~~~d~~----~~~~~~~~~lk~~~p~lkv 73 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPF--LCTHIIYAFAGLNPD-GNIIILDEWNDID----LGLYERFNALKEKNPNLKT 73 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcc--cCCEEEEeeEEECCC-CCEEecCchhhhh----hhHHHHHHHHHhhCCCceE
Confidence 68999999999999889999999998 899999999999987 6777778776644 6889999999999999999
Q ss_pred EEEecCCCCCCChhHhHHHH---------HHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCC---CCcchHHHHHHhhcC
Q psy13762 123 ILGVGGFEDQKDKEKYLDLV---------IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNC---GEKYVLVKSAKHHLK 190 (190)
Q Consensus 123 llSvGGw~~~~~s~~fs~~~---------i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~---~~~~~ll~~ir~~l~ 190 (190)
++|||||+.+ +..|+.++ ++++ ++++++|+|||||||||||....+.. .+...||++||++|+
T Consensus 74 lisiGG~~~~--~~~f~~~~~~~~~r~~fi~~i---v~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~ 148 (362)
T cd02872 74 LLAIGGWNFG--SAKFSAMAASPENRKTFIKSA---IAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFE 148 (362)
T ss_pred EEEEcCCCCC--cchhHHHhCCHHHHHHHHHHH---HHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999874 44676654 7777 99999999999999999997532221 124578999999874
No 4
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=99.97 E-value=2.4e-30 Score=219.37 Aligned_cols=128 Identities=17% Similarity=0.263 Sum_probs=101.6
Q ss_pred CeEEEEEcCCccccCCCCCCCCccCCCCCCCccEEEEeeeeeeCCCceeeecCccccccccchhhHHHHHH-HHHHhCCC
Q psy13762 41 KKILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVT-ALKTSYPD 119 (190)
Q Consensus 41 ~~vv~Yy~~w~~~r~g~~~~~~~~i~~~~~~~THiiyaf~~i~~~~~~i~~~d~~~d~~~~~~~~~~~~l~-~lk~~np~ 119 (190)
-+++|||++|+ ++|+|++|+++ +||||+|||+.++++++++...+. + ...+.++. .+|+++|+
T Consensus 3 ~~~~~Y~~~w~------~~~~~~~i~~~--~~THi~yaf~~~~~~~~~~~~~~~--~------~~~~~~~~~~~k~~~~~ 66 (299)
T cd02879 3 IVKGGYWPAWS------EEFPPSNIDSS--LFTHLFYAFADLDPSTYEVVISPS--D------ESEFSTFTETVKRKNPS 66 (299)
T ss_pred eEEEEEECCCC------CCCChhHCCcc--cCCEEEEEEEEecCCCCEEeeccc--c------HHHHHHHHHHHHHhCCC
Confidence 36799999997 25899999999 899999999999987667765431 1 34556665 58999999
Q ss_pred ceEEEEecCCCCCCChhHhHHHH---------HHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCCCcchHHHHHHhhcC
Q psy13762 120 LNIILGVGGFEDQKDKEKYLDLV---------IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGEKYVLVKSAKHHLK 190 (190)
Q Consensus 120 lKvllSvGGw~~~~~s~~fs~~~---------i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~~~~~ll~~ir~~l~ 190 (190)
+|+|||||||+.+ +..|++++ ++++ ++|+++|||||||||||||.. +....++..||++||++|+
T Consensus 67 lkvlisiGG~~~~--s~~fs~~~~~~~~R~~fi~si---v~~l~~~~fDGidiDWE~P~~-~~d~~n~~~ll~elr~~l~ 140 (299)
T cd02879 67 VKTLLSIGGGGSD--SSAFAAMASDPTARKAFINSS---IKVARKYGFDGLDLDWEFPSS-QVEMENFGKLLEEWRAAVK 140 (299)
T ss_pred CeEEEEEeCCCCC--CchhhHHhCCHHHHHHHHHHH---HHHHHHhCCCceeecccCCCC-hhHHHHHHHHHHHHHHHHH
Confidence 9999999999874 46777765 7788 999999999999999999852 1112234578999999873
No 5
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=99.97 E-value=1.6e-30 Score=222.31 Aligned_cols=137 Identities=19% Similarity=0.291 Sum_probs=104.3
Q ss_pred EEEEEcCCccccCCCCCCCCc-cCCCCCCCccEEEEeeeeeeCCCceeeecCccccc-----------cccchhhHHHHH
Q psy13762 43 ILCYYNHEAYKREGKGKVATE-ELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDT-----------DKNKGHELYKQV 110 (190)
Q Consensus 43 vv~Yy~~w~~~r~g~~~~~~~-~i~~~~~~~THiiyaf~~i~~~~~~i~~~d~~~d~-----------~~~~~~~~~~~l 110 (190)
|+|||++|+.||++ +++. +||+. +||||+|||++|++++..+...+++.|. ......+.++++
T Consensus 1 v~~Y~~~W~~~~~~---~~~~~~i~~~--~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (322)
T cd06548 1 VVGYFTNWGIYGRN---YFVTDDIPAD--KLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQL 75 (322)
T ss_pred CEEEeCCCcccCCC---CCcccCCChh--HCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHH
Confidence 58999999999864 3456 79998 8999999999999985444332222110 001125788999
Q ss_pred HHHHHhCCCceEEEEecCCCCCCChhHhHHH---------HHHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCC------
Q psy13762 111 TALKTSYPDLNIILGVGGFEDQKDKEKYLDL---------VIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNC------ 175 (190)
Q Consensus 111 ~~lk~~np~lKvllSvGGw~~~~~s~~fs~~---------~i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~------ 175 (190)
..||++||++|+++|||||+. +..|+.+ +++++ ++|+++|+|||||||||||....+.|
T Consensus 76 ~~lk~~~p~lkvl~siGG~~~---s~~f~~~~~~~~~r~~Fi~si---v~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~ 149 (322)
T cd06548 76 RKLKQKNPHLKILLSIGGWTW---SGGFSDAAATEASRAKFADSA---VDFIRKYGFDGIDIDWEYPGSGGAPGNVARPE 149 (322)
T ss_pred HHHHHhCCCCEEEEEEeCCCC---CCCchhHhCCHHHHHHHHHHH---HHHHHhcCCCeEEECCcCCCCCCCCCCCCChh
Confidence 999999999999999999987 4566655 47888 99999999999999999997532221
Q ss_pred --CCcchHHHHHHhhcC
Q psy13762 176 --GEKYVLVKSAKHHLK 190 (190)
Q Consensus 176 --~~~~~ll~~ir~~l~ 190 (190)
.+...||++||++|+
T Consensus 150 d~~~~~~ll~~Lr~~l~ 166 (322)
T cd06548 150 DKENFTLLLKELREALD 166 (322)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 124479999999873
No 6
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=99.96 E-value=1.7e-28 Score=211.82 Aligned_cols=129 Identities=19% Similarity=0.313 Sum_probs=99.8
Q ss_pred eEEEEEcCCccccCCCCCCCCccCCCCCCCccEEEEeeeeeeCCCceeeecCccccccccchhhHHHHHHHHHHhCCCce
Q psy13762 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDLN 121 (190)
Q Consensus 42 ~vv~Yy~~w~~~r~g~~~~~~~~i~~~~~~~THiiyaf~~i~~~~~~i~~~d~~~d~~~~~~~~~~~~l~~lk~~np~lK 121 (190)
|+||||++|+.+|++ ..+.|++||.+ +||||+|+|+.++++ +++...+. .+.+.+|.++| ++|
T Consensus 1 ~~v~Y~~~w~~~r~~-~~~~~~~i~~~--~~THi~yaf~~~~~~-g~l~~~~~---------~~~~~~~~~~k----~lk 63 (345)
T cd02878 1 KNIAYFEAYNLDRPC-LNMDVTQIDTS--KYTHIHFAFANITSD-FSVDVSSV---------QEQFSDFKKLK----GVK 63 (345)
T ss_pred CEEEEEChhhcCCCC-CCCCHhHCCcc--cCCEEEEEeEeecCC-CeEeeccc---------HHHHHHHHhhc----CcE
Confidence 589999999999987 47999999998 899999999999986 67765321 35577777765 399
Q ss_pred EEEEecCCCCCCC---hhHhHHH--------HHHHHHHHHHHHHhcCCCeEEeecCCCCCCC--C----CCC---CcchH
Q psy13762 122 IILGVGGFEDQKD---KEKYLDL--------VIHTVGVKAAYAKQNGLAGVAMVDLSLDDFK--G----NCG---EKYVL 181 (190)
Q Consensus 122 vllSvGGw~~~~~---s~~fs~~--------~i~si~~~~~fl~~~gfDGIDIDWeyp~~~~--g----~~~---~~~~l 181 (190)
++||||||+.++. ...|+.+ +++++ ++|+++|+|||||||||||..-. | ... +...|
T Consensus 64 vllsiGG~~~s~~~~~~~~f~~~~~~~~R~~Fi~si---~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~l 140 (345)
T cd02878 64 KILSFGGWDFSTSPSTYQIFRDAVKPANRDTFANNV---VNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEF 140 (345)
T ss_pred EEEEEeCCCCCCCCccchhhHhhcCHHHHHHHHHHH---HHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHH
Confidence 9999999987431 1246543 47888 99999999999999999996421 1 111 23478
Q ss_pred HHHHHhhcC
Q psy13762 182 VKSAKHHLK 190 (190)
Q Consensus 182 l~~ir~~l~ 190 (190)
|++||++|.
T Consensus 141 l~elr~~l~ 149 (345)
T cd02878 141 LKLLKSKLP 149 (345)
T ss_pred HHHHHHHhC
Confidence 999999874
No 7
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=99.94 E-value=6.3e-27 Score=200.30 Aligned_cols=131 Identities=19% Similarity=0.382 Sum_probs=105.3
Q ss_pred eEEEEEcCCccccCCCCCCCCccCCCCCCCccEEEEeeeeeeCCCceeeecCccccccccchhhHHHHHHHHHHhCCCce
Q psy13762 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDLN 121 (190)
Q Consensus 42 ~vv~Yy~~w~~~r~g~~~~~~~~i~~~~~~~THiiyaf~~i~~~~~~i~~~d~~~d~~~~~~~~~~~~l~~lk~~np~lK 121 (190)
+++|||++|+.++ ..|++++++.+ +||||+|+|+.++++ +++...++..+ .+.+.++..+|++||++|
T Consensus 1 ~~~~Y~~~w~~~~---~~~~~~~~~~~--~~thv~~~~~~~~~~-g~~~~~~~~~~------~~~~~~~~~l~~~~~~~k 68 (334)
T smart00636 1 RVVGYFTNWGVYG---RNFPVDDIPAS--KLTHIIYAFANIDPD-GTVTIGDEWAD------IGNFGQLKALKKKNPGLK 68 (334)
T ss_pred CEEEEECchhccC---CCCChhHCCcc--cCcEEEEeeeeeCCC-CCEeeCCcchh------hhhHHHHHHHHHhCCCCE
Confidence 5899999999765 25899999998 899999999999985 77776665543 146778999999999999
Q ss_pred EEEEecCCCCCCChhHhHHH---------HHHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCCCcchHHHHHHhhcC
Q psy13762 122 IILGVGGFEDQKDKEKYLDL---------VIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGEKYVLVKSAKHHLK 190 (190)
Q Consensus 122 vllSvGGw~~~~~s~~fs~~---------~i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~~~~~ll~~ir~~l~ 190 (190)
+|+|||||+. +..|+.+ +++++ ++++++|+|||||||||+|...+....++..||++||+.|+
T Consensus 69 vl~svgg~~~---s~~f~~~~~~~~~r~~fi~~i---~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~ 140 (334)
T smart00636 69 VLLSIGGWTE---SDNFSSMLSDPASRKKFIDSI---VSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALD 140 (334)
T ss_pred EEEEEeCCCC---CcchhHHHCCHHHHHHHHHHH---HHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHH
Confidence 9999999987 4556554 47777 99999999999999999986421112235579999998873
No 8
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=99.94 E-value=7e-26 Score=188.26 Aligned_cols=134 Identities=14% Similarity=0.198 Sum_probs=96.0
Q ss_pred eEEEEEcCCccccCCCCC-CCCccCCCCCCCccEEEEeeeeeeCCCceeeecCccccccccchhhHHHHHHHHHHhCCCc
Q psy13762 42 KILCYYNHEAYKREGKGK-VATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDL 120 (190)
Q Consensus 42 ~vv~Yy~~w~~~r~g~~~-~~~~~i~~~~~~~THiiyaf~~i~~~~~~i~~~d~~~d~~~~~~~~~~~~l~~lk~~np~l 120 (190)
|+||||++|..++++... +.+..++.. +||||||||+.++.+ +++...+.+.+.+. ....++++..+|+ |++
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~--~~THvi~af~~i~~~-G~l~~~d~~~~~~~--~~~~~~~i~~~~~--~g~ 73 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGI--ALTHLIVAALHINDD-GNIHLNDHPPDHPR--FTTLWTELAILQS--SGV 73 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCC--CCceEEEEEEEECCC-CeEEECCCCCCcch--hhHHHHHHHHHHh--CCC
Confidence 689999999877654332 333456666 899999999999986 67776665433210 0245556666664 699
Q ss_pred eEEEEecCCCCCC-----ChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCCCcchHHHHHHhhc
Q psy13762 121 NIILGVGGFEDQK-----DKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGEKYVLVKSAKHHL 189 (190)
Q Consensus 121 KvllSvGGw~~~~-----~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~~~~~ll~~ir~~l 189 (190)
|||||||||+.+. .+..-++.+++++ ++|+++|+|||||||||||.+ ..+...||++||++|
T Consensus 74 KVllSiGG~~~~~fs~~a~~~~~r~~f~~s~---~~~~~~~~~DGiDiDwE~p~~----~~~~~~ll~~Lr~~~ 140 (256)
T cd06546 74 KVMGMLGGAAPGSFSRLDDDDEDFERYYGQL---RDMIRRRGLDGLDLDVEEPMS----LDGIIRLIDRLRSDF 140 (256)
T ss_pred EEEEEECCCCCCCcccccCCHHHHHHHHHHH---HHHHHHhCCCceEEeeecCCC----HhHHHHHHHHHHHHh
Confidence 9999999997531 1222233457888 999999999999999999853 234568999999876
No 9
>KOG2806|consensus
Probab=99.93 E-value=7.4e-26 Score=200.48 Aligned_cols=135 Identities=20% Similarity=0.330 Sum_probs=103.1
Q ss_pred CeEEEEEcCCccccCCCCCCCCccCCCCCCCccEEEEeeeeeeCCCceeeecCccccccccchhhHHHHHHHHHHhCCCc
Q psy13762 41 KKILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDL 120 (190)
Q Consensus 41 ~~vv~Yy~~w~~~r~g~~~~~~~~i~~~~~~~THiiyaf~~i~~~~~~i~~~d~~~d~~~~~~~~~~~~l~~lk~~np~l 120 (190)
+.++||+..|+.++.+.+.+.++++++. +|||++|||+.++.++..+...+.. . +..+.....+|++||+|
T Consensus 52 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~--~~TH~vfafa~~~~~~~~~~~~~~~-~------~~f~~~~~~~k~~n~~v 122 (432)
T KOG2806|consen 52 QNTVCEKSIVGYYPSRIGPETLEDQDPL--KCTHLVYAFAKMKRVGYVVFCGART-M------NRFSSYNQTAKSSNPTV 122 (432)
T ss_pred ccccccceeEEEeCCCCCCCCccccChh--hcCcceEEEeeecccccEEeccchh-h------hhhHHHHHHHHhhCCCc
Confidence 5667777777777766656789999998 9999999999999885444433321 1 34555666699999999
Q ss_pred eEEEEecCCCCCCChhHhHHH---------HHHHHHHHHHHHHhcCCCeEEeecCCCCCC-CCCCCCcchHHHHHHhhcC
Q psy13762 121 NIILGVGGFEDQKDKEKYLDL---------VIHTVGVKAAYAKQNGLAGVAMVDLSLDDF-KGNCGEKYVLVKSAKHHLK 190 (190)
Q Consensus 121 KvllSvGGw~~~~~s~~fs~~---------~i~si~~~~~fl~~~gfDGIDIDWeyp~~~-~g~~~~~~~ll~~ir~~l~ 190 (190)
|+|+|||||..+ ++.|+.| |++|+ ++|+++|+|||||||||||. . +..+.++..|++|+|++|+
T Consensus 123 K~llSIGG~~~n--s~~fs~~~s~~~~r~~FI~Si---i~fl~~~~fDGvDL~We~P~-~~~~d~~~~~~~i~elr~~~~ 196 (432)
T KOG2806|consen 123 KVMISIGGSHGN--SGLFSLVLSDRMIRAKFIESV---VSFIKDYGFDGVDLAWEWPL-FTPSDQLEFSRFIQELRSAFA 196 (432)
T ss_pred eEEEEecCCCCC--ccchhhhhcChHHHHHHHHHH---HHHHHHcCCCceeeeeECCC-CchhhHHHHHHHHHHHHHHHH
Confidence 999999999422 5667665 49999 99999999999999999995 1 1123446689999999873
No 10
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=99.92 E-value=3.8e-25 Score=188.75 Aligned_cols=136 Identities=24% Similarity=0.455 Sum_probs=102.6
Q ss_pred CeEEEEEcCCccccCCCCCCCCccCCCCCCCccEEEEeeeeeeCCCceeeec---CccccccccchhhHHHHHHHHHHhC
Q psy13762 41 KKILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSL---DKELDTDKNKGHELYKQVTALKTSY 117 (190)
Q Consensus 41 ~~vv~Yy~~w~~~r~g~~~~~~~~i~~~~~~~THiiyaf~~i~~~~~~i~~~---d~~~d~~~~~~~~~~~~l~~lk~~n 117 (190)
++++|||++|+.++.+ .|.+++++.. .||||+|+|+.++.++ ..... +...+. ....+..+..+|+++
T Consensus 1 ~~vv~Y~~~~~~~~~~--~~~~~~i~~~--~~t~i~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 71 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPG--SYKIEDIPWS--KCTHIVYAFAGIDPNG-NLNYPWNFDDDNDG----DSSGFKNLKELKAKN 71 (343)
T ss_dssp BEEEEEEEGGGGSSTG--CSHGGGSHTT--TESEEEEEEEEEETTT-TEEEGTTTECSSTT----HHHHHHHHHHHHHHH
T ss_pred CEEEEEECCcCCCCCC--CCCHHHCCcc--cCCEEEEEeeeecCCC-ceecccccccccCc----cccchhHHHHHHhhc
Confidence 5899999999988765 5789999987 8999999999999884 33211 111111 156778888999999
Q ss_pred CCceEEEEecCCCCCCChhHhHHHH---------HHHHHHHHHHHHhcCCCeEEeecCCCCCCCCC--CCCcchHHHHHH
Q psy13762 118 PDLNIILGVGGFEDQKDKEKYLDLV---------IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGN--CGEKYVLVKSAK 186 (190)
Q Consensus 118 p~lKvllSvGGw~~~~~s~~fs~~~---------i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~--~~~~~~ll~~ir 186 (190)
|++|+++|||||..+ +..|+.+. ++++ ++++++|+|||||||||+|...+.. ...+..||++||
T Consensus 72 ~~~kvllsigg~~~~--~~~~~~~~~~~~~r~~f~~~i---~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~ 146 (343)
T PF00704_consen 72 PGVKVLLSIGGWGMS--SDGFSQLLSNPAKRQNFINNI---VSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELR 146 (343)
T ss_dssp TT-EEEEEEEETTSS--HHHHHHHHHSHHHHHHHHHHH---HHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHH
T ss_pred cCceEEEEecccccc--ccccccccccHHHHHHHHHhh---hhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhh
Confidence 999999999999873 22676654 7777 9999999999999999998654221 123457999999
Q ss_pred hhcC
Q psy13762 187 HHLK 190 (190)
Q Consensus 187 ~~l~ 190 (190)
++|+
T Consensus 147 ~~l~ 150 (343)
T PF00704_consen 147 KALK 150 (343)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 8874
No 11
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=99.92 E-value=7.1e-25 Score=181.85 Aligned_cols=118 Identities=13% Similarity=0.228 Sum_probs=86.9
Q ss_pred CCCccCCCCCCCccEEEEeee-eeeCC----CceeeecCccccccccchhhHHHHHHHHHHhCCCceEEEEecCCCCCCC
Q psy13762 60 VATEELRPALTTCTHLVYAYA-GISNS----DYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDLNIILGVGGFEDQKD 134 (190)
Q Consensus 60 ~~~~~i~~~~~~~THiiyaf~-~i~~~----~~~i~~~d~~~d~~~~~~~~~~~~l~~lk~~np~lKvllSvGGw~~~~~ 134 (190)
..+++||....+||||||||+ ..+.. +++..+. | |.+ ...++++..||++||++|||||||||+.+..
T Consensus 13 ~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~--~-~~~----~~~~~~~~~lK~~~p~lKvllSiGG~~~~~~ 85 (253)
T cd06544 13 VTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPY--W-DTE----NLTPEAVKSIKAQHPNVKVVISIGGRGVQNN 85 (253)
T ss_pred ccccccCCCCCeeEEEEEEeeeecccccCCCCCccccc--c-Ccc----ccCHHHHHHHHHhCCCcEEEEEeCCCCCCCC
Confidence 468999998333999999999 33221 2222211 2 222 3567899999999999999999999987421
Q ss_pred --------hhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCCCcchHHHHHHhhcC
Q psy13762 135 --------KEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGEKYVLVKSAKHHLK 190 (190)
Q Consensus 135 --------s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~~~~~ll~~ir~~l~ 190 (190)
...|.+.+++|+ ++|+++|||||||||||||.+ ...+...||++||++|+
T Consensus 86 ~~~~~~~~~~~~~~~fv~S~---~~~l~~~~fDGiDiDwE~~~~---d~~~f~~ll~~l~~~l~ 143 (253)
T cd06544 86 PTPFDPSNVDSWVSNAVSSL---TSIIQTYNLDGIDIDYEHFPA---DPDTFVECIGQLITELK 143 (253)
T ss_pred ccccCchhhhhHHHHHHHHH---HHHHHHhCCCceeeecccCCc---CHHHHHHHHHHHHHHhh
Confidence 234556668999 999999999999999999842 22335578999999885
No 12
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=99.90 E-value=2.8e-23 Score=166.24 Aligned_cols=132 Identities=20% Similarity=0.353 Sum_probs=97.0
Q ss_pred EEEEEcCCccccCCCCCCCCccCCCCCCCccEEEEeeeeeeCCCceeeecCccccccccchhhHHHHHHHHHHhCCCceE
Q psy13762 43 ILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDLNI 122 (190)
Q Consensus 43 vv~Yy~~w~~~r~g~~~~~~~~i~~~~~~~THiiyaf~~i~~~~~~i~~~d~~~d~~~~~~~~~~~~l~~lk~~np~lKv 122 (190)
++|||++|+.++.+ .+..++.. +||||+|+|+.++.++......+... ......+..+++++|++||
T Consensus 1 vv~y~~~w~~~~~~----~~~~~~~~--~~thvi~~f~~v~~~~~~~~~~~~~~-------~~~~~~i~~l~~~~~g~kv 67 (210)
T cd00598 1 VICYYDGWSSGRGP----DPTDIPLS--LCTHIIYAFAEISSDGSLNLFGDKSE-------EPLKGALEELASKKPGLKV 67 (210)
T ss_pred CEEEEccccccCCC----ChhhCCcc--cCCEEEEeeEEECCCCCEecccCccc-------HHHHHHHHHHHHhCCCCEE
Confidence 58999999887642 27788887 89999999999988743322111111 3456678889988899999
Q ss_pred EEEecCCCCCCC-----hhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCCC-CCCCcchHHHHHHhhcC
Q psy13762 123 ILGVGGFEDQKD-----KEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKG-NCGEKYVLVKSAKHHLK 190 (190)
Q Consensus 123 llSvGGw~~~~~-----s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g-~~~~~~~ll~~ir~~l~ 190 (190)
++|||||..... +...++.+++++ ++++++|+|||||||||+|..... .......||+++|++|+
T Consensus 68 ~~sigg~~~~~~~~~~~~~~~~~~f~~~~---~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~ 138 (210)
T cd00598 68 LISIGGWTDSSPFTLASDPASRAAFANSL---VSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALG 138 (210)
T ss_pred EEEEcCCCCCCCchhhcCHHHHHHHHHHH---HHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhc
Confidence 999999987421 223344568888 999999999999999999864211 01234579999999874
No 13
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=99.88 E-value=3.8e-22 Score=165.28 Aligned_cols=124 Identities=13% Similarity=0.164 Sum_probs=90.4
Q ss_pred EEEEEcCCccccCCCCCCCCccCCCCCCCccEEEEeeeeeeCCCceeeecCccccccccchhhHHHHHHHHHHhCCCceE
Q psy13762 43 ILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDLNI 122 (190)
Q Consensus 43 vv~Yy~~w~~~r~g~~~~~~~~i~~~~~~~THiiyaf~~i~~~~~~i~~~d~~~d~~~~~~~~~~~~l~~lk~~np~lKv 122 (190)
|+|||++|+.+. ..+++++.. +||||+|+|+.++++ |++...++. ..+..+....++ +++||
T Consensus 1 vigyy~~w~~~~-----~~~~~~~~~--~lThv~~~f~~i~~~-G~l~~~~~~---------~~~~~~~~~~~~-~~~kv 62 (253)
T cd06545 1 VVGYLPNYDDLN-----ALSPTIDFS--KLTHINLAFANPDAN-GTLNANPVR---------SELNSVVNAAHA-HNVKI 62 (253)
T ss_pred CEEEeCCccccc-----CCcccCChh--hCCeEEEEEEEECCC-CeEEecCcH---------HHHHHHHHHHHh-CCCEE
Confidence 689999998653 258899998 899999999999987 676654321 223444443322 59999
Q ss_pred EEEecCCCCCCC-----hhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCCCcchHHHHHHhhcC
Q psy13762 123 ILGVGGFEDQKD-----KEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGEKYVLVKSAKHHLK 190 (190)
Q Consensus 123 llSvGGw~~~~~-----s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~~~~~ll~~ir~~l~ 190 (190)
++|||||+.+.. +..-++.+++++ ++++++|+|||||||||+|..- ..++..|+++||++|+
T Consensus 63 l~sigg~~~~~~~~~~~~~~~r~~fi~~l---v~~~~~~~~DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~ 129 (253)
T cd06545 63 LISLAGGSPPEFTAALNDPAKRKALVDKI---INYVVSYNLDGIDVDLEGPDVT---FGDYLVFIRALYAALK 129 (253)
T ss_pred EEEEcCCCCCcchhhhcCHHHHHHHHHHH---HHHHHHhCCCceeEEeeccCcc---HhHHHHHHHHHHHHHh
Confidence 999999976310 122233457888 9999999999999999998531 2234579999999874
No 14
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=99.88 E-value=1.1e-22 Score=173.62 Aligned_cols=126 Identities=17% Similarity=0.175 Sum_probs=96.3
Q ss_pred eEEEEEcCCccccCCCCCCCCccCCCCCCCccEEEEeeeeeeCCCceeeecCccccccccchhhHHHHHHHHHHhCCCce
Q psy13762 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDLN 121 (190)
Q Consensus 42 ~vv~Yy~~w~~~r~g~~~~~~~~i~~~~~~~THiiyaf~~i~~~~~~i~~~d~~~d~~~~~~~~~~~~l~~lk~~np~lK 121 (190)
.++|||.+|+.+ .+.+.+++.. +||||+|+|+.++++++.+...+ ..+.+ ...+..+|++||++|
T Consensus 4 ~~~~y~~~W~~~-----~~~~~~~~~~--~lthv~~~f~~i~~~g~~~~~~~-~~~~~-------~~~~~~lk~~~~~lk 68 (318)
T cd02876 4 PVLGYVTPWNSH-----GYDVAKKFAA--KFTHVSPVWLQIKRKGNKFVIEG-THDID-------KGWIEEVRKANKNIK 68 (318)
T ss_pred ceEEEEcCcCcc-----chHHHHHHhc--cCCEecceEEEEecCCCeeeeec-Ccchh-------hHHHHHHHhhCCCcE
Confidence 578999999764 3778899988 89999999999998754444322 12221 124667999999999
Q ss_pred EE--EEecCCCCCCChhHhHHHH---------HHHHHHHHHHHHhcCCCeEEee-cCCCCCCCCCC---CCcchHHHHHH
Q psy13762 122 II--LGVGGFEDQKDKEKYLDLV---------IHTVGVKAAYAKQNGLAGVAMV-DLSLDDFKGNC---GEKYVLVKSAK 186 (190)
Q Consensus 122 vl--lSvGGw~~~~~s~~fs~~~---------i~si~~~~~fl~~~gfDGIDID-Weyp~~~~g~~---~~~~~ll~~ir 186 (190)
|+ +++|||+. ..|++++ ++++ ++|+++||||||||| ||||+. .+.+ .+...||++||
T Consensus 69 vlp~i~~gg~~~----~~f~~~~~~~~~R~~fi~s~---~~~~~~~~~DGidiD~we~p~~-~~~~~d~~~~~~~l~el~ 140 (318)
T cd02876 69 ILPRVLFEGWSY----QDLQSLLNDEQEREKLIKLL---VTTAKKNHFDGIVLEVWSQLAA-YGVPDKRKELIQLVIHLG 140 (318)
T ss_pred EEeEEEECCCCH----HHHHHHHcCHHHHHHHHHHH---HHHHHHcCCCcEEEechhhhcc-cCCHHHHHHHHHHHHHHH
Confidence 99 78899975 3577664 7888 999999999999999 999964 2322 23457999999
Q ss_pred hhcC
Q psy13762 187 HHLK 190 (190)
Q Consensus 187 ~~l~ 190 (190)
++|+
T Consensus 141 ~~l~ 144 (318)
T cd02876 141 ETLH 144 (318)
T ss_pred HHHh
Confidence 9874
No 15
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.87 E-value=1.1e-21 Score=167.39 Aligned_cols=135 Identities=13% Similarity=0.179 Sum_probs=94.0
Q ss_pred CeEEEEEcCCccccCCCCCCCCccCCCCCCCccEEEEeeeeeeCCCceeee-cC----ccccccccchhhHHHHHHHHHH
Q psy13762 41 KKILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKS-LD----KELDTDKNKGHELYKQVTALKT 115 (190)
Q Consensus 41 ~~vv~Yy~~w~~~r~g~~~~~~~~i~~~~~~~THiiyaf~~i~~~~~~i~~-~d----~~~d~~~~~~~~~~~~l~~lk~ 115 (190)
++++|||++|+.++.+.. ++++.++ + .||||+|||+.+++++ .... ++ +..... ....+++..+|+
T Consensus 1 k~~vgY~~~w~~~~~~~~-~~~~~~~-~--~yt~i~~AF~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~i~~~q~ 71 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGR-QDLDDVP-S--KYNVINVAFAEPTSDG-GGEVTFNNGSSPGGYSP----AEFKADIKALQA 71 (312)
T ss_pred CeEEEecCcccCCCCCCC-CCcccCC-C--CCCEEEEcceeecCCC-ceeEeecccCCcccCCh----HHHHHHHHHHHH
Confidence 589999999999886643 4566665 4 7999999999988752 2221 11 000000 345566667776
Q ss_pred hCCCceEEEEecCCCCCC--ChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCC---CCcchHHHHHHhhc
Q psy13762 116 SYPDLNIILGVGGFEDQK--DKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNC---GEKYVLVKSAKHHL 189 (190)
Q Consensus 116 ~np~lKvllSvGGw~~~~--~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~---~~~~~ll~~ir~~l 189 (190)
+ ++|||||||||..+. .+..-++.+++++ ++++++|+|||||||||+|..-.+.. .+...+||++|++|
T Consensus 72 ~--G~KVllSiGG~~~~~~~~~~~~~~~fa~sl---~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~ 145 (312)
T cd02871 72 K--GKKVLISIGGANGHVDLNHTAQEDNFVDSI---VAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHY 145 (312)
T ss_pred C--CCEEEEEEeCCCCccccCCHHHHHHHHHHH---HHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHc
Confidence 5 899999999997642 1334455678999 99999999999999999985321111 23457899999876
No 16
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=99.62 E-value=2e-15 Score=128.53 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=83.2
Q ss_pred eEEEEEcCCccccCCCCCCCCccCCCCCCCccEEEEeeeeeeCCCceeeecCccccccccchhhHHHHHHHHHHhCCCce
Q psy13762 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDLN 121 (190)
Q Consensus 42 ~vv~Yy~~w~~~r~g~~~~~~~~i~~~~~~~THiiyaf~~i~~~~~~i~~~d~~~d~~~~~~~~~~~~l~~lk~~np~lK 121 (190)
.++|||..|.... + ..+....+++|||....+.++++ +++.. .. ..++....+++ ++|
T Consensus 3 ~~~g~~~~~~~~~-----~--~~~~~~~~~lt~v~p~w~~~~~~-g~~~~---~~----------~~~~~~~a~~~-~~k 60 (313)
T cd02874 3 EVLGYYTPRNGSD-----Y--ESLRANAPYLTYIAPFWYGVDAD-GTLTG---LP----------DERLIEAAKRR-GVK 60 (313)
T ss_pred eEEEEEecCCCch-----H--HHHHHhcCCCCEEEEEEEEEcCC-CCCCC---CC----------CHHHHHHHHHC-CCe
Confidence 5799999986431 1 11112223799999998889886 45322 11 13455555555 999
Q ss_pred EEEEecCCCCCC-ChhHhHHH---------HHHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCCCcchHHHHHHhhcC
Q psy13762 122 IILGVGGFEDQK-DKEKYLDL---------VIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGEKYVLVKSAKHHLK 190 (190)
Q Consensus 122 vllSvGGw~~~~-~s~~fs~~---------~i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~~~~~ll~~ir~~l~ 190 (190)
++++||||+.+. ++..|+.+ +++++ ++|+++|||||||||||+|.. ....++..||++||++|+
T Consensus 61 v~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~~i---v~~l~~~~~DGidiDwE~~~~--~d~~~~~~fl~~lr~~l~ 134 (313)
T cd02874 61 PLLVITNLTNGNFDSELAHAVLSNPEARQRLINNI---LALAKKYGYDGVNIDFENVPP--EDREAYTQFLRELSDRLH 134 (313)
T ss_pred EEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHHHH---HHHHHHhCCCcEEEecccCCH--HHHHHHHHHHHHHHHHhh
Confidence 999999997311 14455554 37777 999999999999999999742 122335689999999874
No 17
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.61 E-value=4e-15 Score=123.15 Aligned_cols=130 Identities=13% Similarity=0.062 Sum_probs=83.6
Q ss_pred eEEEEEcCCccccCCCCCCCCccCCCCCCCccEEEEeeeeeeCCCceeeecCccccccccchhhHHHHHHHHHHhCCCce
Q psy13762 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDLN 121 (190)
Q Consensus 42 ~vv~Yy~~w~~~r~g~~~~~~~~i~~~~~~~THiiyaf~~i~~~~~~i~~~d~~~d~~~~~~~~~~~~l~~lk~~np~lK 121 (190)
+.+|||++|.....+. ...+.++|.. +++|+..++.++.++ ... ..... ......+..++++ ++|
T Consensus 2 ~~~~y~~~~~~~~~~~-~~~l~~~pds---~D~v~lf~~~~~~~~-~~~--~~~~~------~~~~~~i~~l~~k--G~K 66 (255)
T cd06542 2 ISFGYFEVWDDKGASL-QESLLNLPDS---VDMVSLFAANINLDA-ATA--VQFLL------TNKETYIRPLQAK--GTK 66 (255)
T ss_pred eEEEEEEecCCcCccc-ccccccCCCc---ceEEEEcccccCccc-ccc--hhhhh------HHHHHHHHHHhhC--CCE
Confidence 5789999997543222 2458889985 999988554444321 100 00100 2233445556655 899
Q ss_pred EEEEecCCCCCCC-----hhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCC-----CCcchHHHHHHhhc
Q psy13762 122 IILGVGGFEDQKD-----KEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNC-----GEKYVLVKSAKHHL 189 (190)
Q Consensus 122 vllSvGGw~~~~~-----s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~-----~~~~~ll~~ir~~l 189 (190)
|++|||||..+.. +..-.+.+++++ ++++++|||||||||||||....+.. .....|+++||+.|
T Consensus 67 Vl~sigg~~~~~~~~~~~~~~~~~~fa~~l---~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~ 141 (255)
T cd06542 67 VLLSILGNHLGAGFANNLSDAAAKAYAKAI---VDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYM 141 (255)
T ss_pred EEEEECCCCCCCCccccCCHHHHHHHHHHH---HHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHh
Confidence 9999999976421 111134458888 99999999999999999986422111 12447899999887
No 18
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.50 E-value=1.3e-13 Score=116.77 Aligned_cols=108 Identities=11% Similarity=0.059 Sum_probs=73.7
Q ss_pred CccEEEEeeeeeeCCCceeeecCcc-ccccccchhhHHHHHHHHHHhCCCceEEEEecCCCCCC--ChhHhHHHHHHHHH
Q psy13762 71 TCTHLVYAYAGISNSDYHIKSLDKE-LDTDKNKGHELYKQVTALKTSYPDLNIILGVGGFEDQK--DKEKYLDLVIHTVG 147 (190)
Q Consensus 71 ~~THiiyaf~~i~~~~~~i~~~d~~-~d~~~~~~~~~~~~l~~lk~~np~lKvllSvGGw~~~~--~s~~fs~~~i~si~ 147 (190)
.|+|+++||+..+.+ +++...... .+.. ....+++..||++ ++||+||||||.... .+..-++.+++++
T Consensus 25 g~~~v~lAFi~~~~~-~~~~w~g~~~~~~~----~~~~~~i~~lk~~--G~kViiS~GG~~g~~~~~~~~~~~~~~~a~- 96 (294)
T cd06543 25 GVKAFTLAFIVASGG-CKPAWGGSYPLDQG----GWIKSDIAALRAA--GGDVIVSFGGASGTPLATSCTSADQLAAAY- 96 (294)
T ss_pred CCCEEEEEEEEcCCC-CcccCCCCCCcccc----hhHHHHHHHHHHc--CCeEEEEecCCCCCccccCcccHHHHHHHH-
Confidence 599999999977643 444322110 0101 3556788889988 589999999998742 1122334558888
Q ss_pred HHHHHHHhcCCCeEEeecCCCCCCCCCC--CCcchHHHHHHhhc
Q psy13762 148 VKAAYAKQNGLAGVAMVDLSLDDFKGNC--GEKYVLVKSAKHHL 189 (190)
Q Consensus 148 ~~~~fl~~~gfDGIDIDWeyp~~~~g~~--~~~~~ll~~ir~~l 189 (190)
.+++.+|+|||||||||+|.. .... ..+..+|++||+++
T Consensus 97 --~~~i~~y~~dgiDfDiE~~~~-~d~~~~~~~~~al~~Lq~~~ 137 (294)
T cd06543 97 --QKVIDAYGLTHLDFDIEGGAL-TDTAAIDRRAQALALLQKEY 137 (294)
T ss_pred --HHHHHHhCCCeEEEeccCCcc-ccchhHHHHHHHHHHHHHHC
Confidence 999999999999999999752 1111 22457888888764
No 19
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=99.47 E-value=1.5e-13 Score=116.49 Aligned_cols=125 Identities=16% Similarity=0.203 Sum_probs=85.4
Q ss_pred EEEEEcCCccccCCCCCCCCccCCCCCCCccEEEEeeeeeeCCCceeeecCccccccccchhhHHHHHHHHHHhCCCceE
Q psy13762 43 ILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDLNI 122 (190)
Q Consensus 43 vv~Yy~~w~~~r~g~~~~~~~~i~~~~~~~THiiyaf~~i~~~~~~i~~~d~~~d~~~~~~~~~~~~l~~lk~~np~lKv 122 (190)
++|||..|... ..+.+..+...+|||.--...+...++.+... .| ......+..+|+++|.+++
T Consensus 2 ~l~~~~~w~~~-------s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~~---~d------~~~~~~~~~~k~~~~~l~~ 65 (298)
T cd06549 2 ALAFYTPWDDA-------SFASLKRHAPRLDWLVPEWLNLTGPEGRIDVF---VD------PQGVAIIAAAKAHPKVLPL 65 (298)
T ss_pred eeEEEecCChh-------hHHHHHHhhccCCEEeceeEEEecCCCceecc---CC------hHHHHHHHHHHcCCceeEE
Confidence 68999999432 11222222236999998777787444666431 11 2333445667888899999
Q ss_pred EEEecCCCCCCChhHhHHHH---------HHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCCCcchHHHHHHhhcC
Q psy13762 123 ILGVGGFEDQKDKEKYLDLV---------IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGEKYVLVKSAKHHLK 190 (190)
Q Consensus 123 llSvGGw~~~~~s~~fs~~~---------i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~~~~~ll~~ir~~l~ 190 (190)
+.+++|++.+ +..|++++ ++++ ++++++|||||||||||++.. ....++..||++||++|+
T Consensus 66 ~~~~~~~~~~--~~~~~~~l~~~~~R~~fi~~i---v~~~~~~~~dGidiD~E~~~~--~d~~~~~~fl~eL~~~l~ 135 (298)
T cd06549 66 VQNISGGAWD--GKNIARLLADPSARAKFIANI---AAYLERNQADGIVLDFEELPA--DDLPKYVAFLSELRRRLP 135 (298)
T ss_pred EEecCCCCCC--HHHHHHHhcCHHHHHHHHHHH---HHHHHHhCCCCEEEecCCCCh--hHHHHHHHHHHHHHHHhh
Confidence 9999987653 34566654 7777 999999999999999998742 122335579999999884
No 20
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=99.39 E-value=2.9e-12 Score=111.37 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=74.7
Q ss_pred CCCCeEEEEEcCCccccCCCCCCCCccCCCCCCCccEEEEeeeeeeCCCceeeecCccccccccchhhHHHHHHHHHHhC
Q psy13762 38 PPPKKILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVTALKTSY 117 (190)
Q Consensus 38 ~~~~~vv~Yy~~w~~~r~g~~~~~~~~i~~~~~~~THiiyaf~~i~~~~~~i~~~d~~~d~~~~~~~~~~~~l~~lk~~n 117 (190)
.+.+.|+||...- ..-...+.. ++|||... . + .+ .++....+++
T Consensus 33 ~~~~~~~~~~~~~---------~~~~~~~~~--~~tti~~~-----~---~---~~--------------~~~~~~A~~~ 76 (358)
T cd02875 33 GPRFEFLVFSVNS---------TNYPNYDWS--KVTTIAIF-----G---D---ID--------------DELLCYAHSK 76 (358)
T ss_pred CCceEEEEEEeCC---------CcCcccccc--cceEEEec-----C---C---CC--------------HHHHHHHHHc
Confidence 4667899998642 223456666 78888764 1 1 11 2455555554
Q ss_pred CCceEEEEecCCCCC-CChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCCC-CCCCcchHHHHHHhhcC
Q psy13762 118 PDLNIILGVGGFEDQ-KDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKG-NCGEKYVLVKSAKHHLK 190 (190)
Q Consensus 118 p~lKvllSvGGw~~~-~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g-~~~~~~~ll~~ir~~l~ 190 (190)
++||+++ |++... -.+...++.+++++ ++|+++|||||||||||||..-.. ...++..||++||++|+
T Consensus 77 -~v~v~~~-~~~~~~~l~~~~~R~~fi~si---v~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~ 146 (358)
T cd02875 77 -GVRLVLK-GDVPLEQISNPTYRTQWIQQK---VELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFK 146 (358)
T ss_pred -CCEEEEE-CccCHHHcCCHHHHHHHHHHH---HHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHh
Confidence 9999987 443221 01445666779999 999999999999999999864211 11234579999999884
No 21
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.26 E-value=4.1e-11 Score=100.95 Aligned_cols=108 Identities=8% Similarity=0.009 Sum_probs=65.0
Q ss_pred CccEEEEeeeeeeCCCceeeecCccccccc-c--chhhHHHHHHHHHHhCCCceEEEEecCCCCCC--ChhHhHHHHHHH
Q psy13762 71 TCTHLVYAYAGISNSDYHIKSLDKELDTDK-N--KGHELYKQVTALKTSYPDLNIILGVGGFEDQK--DKEKYLDLVIHT 145 (190)
Q Consensus 71 ~~THiiyaf~~i~~~~~~i~~~d~~~d~~~-~--~~~~~~~~l~~lk~~np~lKvllSvGGw~~~~--~s~~fs~~~i~s 145 (190)
.++-|+.+|+..-++++.. .++-...... . .-......+..+++ +++|||||||||+.+. .+..-.+.++++
T Consensus 24 ~~dii~i~Fl~~~~~~~~p-~~n~~~~c~~~~~~~c~~~~~dI~~cq~--~G~KVlLSIGG~~~~~~~~s~~~a~~Fa~~ 100 (280)
T cd02877 24 NYDIVNISFLNVFGSGGTP-GLNFAGHCGGSTYPNCPQLGADIKHCQS--KGKKVLLSIGGAGGSYSLSSDADAKDFADY 100 (280)
T ss_pred CccEEEEEeEcccCCCCCc-ccCccccCcccccccchhHHHHHHHHHH--CCCEEEEEccCCCCCcCCCCHHHHHHHHHH
Confidence 5888999998655432111 1111000000 0 00234455555655 4999999999998642 122233445677
Q ss_pred HHHHHHHH------------HhcCCCeEEeecCCCCCCCCCCCCcchHHHHHHhhc
Q psy13762 146 VGVKAAYA------------KQNGLAGVAMVDLSLDDFKGNCGEKYVLVKSAKHHL 189 (190)
Q Consensus 146 i~~~~~fl------------~~~gfDGIDIDWeyp~~~~g~~~~~~~ll~~ir~~l 189 (190)
+ ..+. .+++|||||||||+|.. .++..|+++||+.+
T Consensus 101 l---~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~-----~~~~~l~~~LR~~~ 148 (280)
T cd02877 101 L---WNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP-----ENYDALAKRLRSLF 148 (280)
T ss_pred H---HHHhCCccccccccccccccccceEEecccCCc-----cCHHHHHHHHHHHh
Confidence 6 5544 36789999999998863 23557999999876
No 22
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=2.9e-10 Score=93.22 Aligned_cols=135 Identities=16% Similarity=0.229 Sum_probs=85.0
Q ss_pred CCCCeEEEEEcCCccc-----cCCCC-CCCCccCCCCCCCccEEEEeeeeeeCCCceeeecCccccccccchhhHHHHHH
Q psy13762 38 PPPKKILCYYNHEAYK-----REGKG-KVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVT 111 (190)
Q Consensus 38 ~~~~~vv~Yy~~w~~~-----r~g~~-~~~~~~i~~~~~~~THiiyaf~~i~~~~~~i~~~d~~~d~~~~~~~~~~~~l~ 111 (190)
...+++||||++|... ..|.. .+..++.|. .+..+..+|+.-. +++..+.|..+.+ .+.-.++.
T Consensus 23 ~~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~---~ynvv~V~Fmk~~---g~iptf~P~~~~d----aeFr~~v~ 92 (332)
T COG3469 23 ISNKVLVGYWHNWKSGAADGYQQGSSADIALADTPR---NYNVVTVSFMKGA---GDIPTFKPYNDPD----AEFRAQVG 92 (332)
T ss_pred cccceEEEeeecccccccccccccceeeeEeccCCc---ccceEEEEEeecC---CCCcccCcCCCCH----HHHHHHHH
Confidence 3455999999999542 22221 233445554 4778888887433 3566677776654 34444555
Q ss_pred HHHHhCCCceEEEEecCCCCCCC-hhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCCCc---chHHHHHHh
Q psy13762 112 ALKTSYPDLNIILGVGGFEDQKD-KEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGEK---YVLVKSAKH 187 (190)
Q Consensus 112 ~lk~~np~lKvllSvGGw~~~~~-s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~~~---~~ll~~ir~ 187 (190)
+|.++ +--++||+||...+-+ ...-.+.+++++ ++++++|||||+|||=|--.-. ..++. -.+||.+|+
T Consensus 93 aLnae--GkavllsLGGAdghIeL~~~qE~~fv~ei---irlietyGFDGLDiDLEq~ai~--~~dnq~v~p~alk~vk~ 165 (332)
T COG3469 93 ALNAE--GKAVLLSLGGADGHIELKAGQEQAFVNEI---IRLIETYGFDGLDIDLEQSAIL--AADNQTVIPAALKAVKD 165 (332)
T ss_pred Hhhcc--CcEEEEEccCccceEEeccchHHHHHHHH---HHHHHHhCCCccccchhhhhhh--hcCCeeehHHHHHHHHH
Confidence 56555 7889999999866421 011155678999 9999999999999999743110 01111 246777776
Q ss_pred hc
Q psy13762 188 HL 189 (190)
Q Consensus 188 ~l 189 (190)
+-
T Consensus 166 hy 167 (332)
T COG3469 166 HY 167 (332)
T ss_pred HH
Confidence 53
No 23
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=97.02 E-value=0.0013 Score=57.11 Aligned_cols=47 Identities=36% Similarity=0.774 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCCC-cchHHHHHHhhc
Q psy13762 143 IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGE-KYVLVKSAKHHL 189 (190)
Q Consensus 143 i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~~-~~~ll~~ir~~l 189 (190)
.+|+..|+++++++|+.||-|+=-.-|||.|.||. .+|||++|.++|
T Consensus 315 ~~Si~~K~~~~~~~~lgGv~iW~l~~DD~~g~cg~~~~pLl~~i~~~~ 362 (362)
T cd02872 315 EESIALKVQYLKSKGLGGAMVWSIDLDDFRGTCGQGKYPLLNAINRAL 362 (362)
T ss_pred HHHHHHHHHHHHhCCCceEEEEeeecCcCCCccCCCCCcHHHHHHHhC
Confidence 88999999999999999998754456789999998 899999999875
No 24
>KOG4701|consensus
Probab=96.79 E-value=0.018 Score=50.44 Aligned_cols=18 Identities=22% Similarity=0.626 Sum_probs=14.0
Q ss_pred HHhCCCceEEEEecCCCCC
Q psy13762 114 KTSYPDLNIILGVGGFEDQ 132 (190)
Q Consensus 114 k~~np~lKvllSvGGw~~~ 132 (190)
.+.+ +.|||||+||...+
T Consensus 99 CQS~-GiKVlLSLGG~~Gn 116 (568)
T KOG4701|consen 99 CQSN-GIKVLLSLGGYNGN 116 (568)
T ss_pred HHhc-CeEEEEeccCcccc
Confidence 3444 99999999998653
No 25
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=96.68 E-value=0.0034 Score=55.78 Aligned_cols=47 Identities=53% Similarity=0.876 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCC-CcchHHHHHHhhc
Q psy13762 143 IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCG-EKYVLVKSAKHHL 189 (190)
Q Consensus 143 i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~-~~~~ll~~ir~~l 189 (190)
.+|+..|+++++++|+.|+.++=-.-|||+|.|+ ..+|||++|++.|
T Consensus 366 ~~Si~~K~~y~~~~gLgGv~~W~l~~DD~~g~c~~~~~pll~~i~~~~ 413 (413)
T cd02873 366 PDTAANKAGYAKAKGLGGVALFDLSLDDFRGQCTGDKFPILRSAKYRL 413 (413)
T ss_pred HHHHHHHHHHHHhCCCceEEEEeeecCcCCCCcCCCCChHHHHHHhhC
Confidence 7899999999999999999985556789999995 5799999999875
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=96.17 E-value=0.014 Score=50.75 Aligned_cols=75 Identities=13% Similarity=0.015 Sum_probs=47.0
Q ss_pred HHHHHHhCCCceEEEEec-CCCCCCChhHhHH----------HHHHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCCCc
Q psy13762 110 VTALKTSYPDLNIILGVG-GFEDQKDKEKYLD----------LVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGEK 178 (190)
Q Consensus 110 l~~lk~~np~lKvllSvG-Gw~~~~~s~~fs~----------~~i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~~~ 178 (190)
.....++| +|||+-.|- -|... .....+ ..++.+ +++++.|||||+-||+|....-+......
T Consensus 51 ~idaAHkn-GV~Vlgti~~e~~~~--~~~~~~lL~~~~~~~~~~a~kL---v~lak~yGfDGw~iN~E~~~~~~~~~~~l 124 (339)
T cd06547 51 WINAAHRN-GVPVLGTFIFEWTGQ--VEWLEDFLKKDEDGSFPVADKL---VEVAKYYGFDGWLINIETELGDAEKAKRL 124 (339)
T ss_pred HHHHHHhc-CCeEEEEEEecCCCc--hHHHHHHhccCcccchHHHHHH---HHHHHHhCCCceEeeeeccCCcHHHHHHH
Confidence 44456666 999986663 12111 122222 237788 99999999999999998653101112234
Q ss_pred chHHHHHHhhcC
Q psy13762 179 YVLVKSAKHHLK 190 (190)
Q Consensus 179 ~~ll~~ir~~l~ 190 (190)
..++++|+++++
T Consensus 125 ~~F~~~L~~~~~ 136 (339)
T cd06547 125 IAFLRYLKAKLH 136 (339)
T ss_pred HHHHHHHHHHHh
Confidence 468888888764
No 27
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=94.81 E-value=0.032 Score=47.92 Aligned_cols=74 Identities=9% Similarity=0.005 Sum_probs=42.1
Q ss_pred HHHHHHhCCCceEEEEec-CCCCCCChhHhHHHH----------HHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCCCc
Q psy13762 110 VTALKTSYPDLNIILGVG-GFEDQKDKEKYLDLV----------IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGEK 178 (190)
Q Consensus 110 l~~lk~~np~lKvllSvG-Gw~~~~~s~~fs~~~----------i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~~~ 178 (190)
.+...++| +||||=.|- .|+.+ .....+++ ++-+ +++++.|||||.-|+||.+..-+......
T Consensus 47 widaAHrn-GV~vLGTiife~~~~--~~~~~~ll~~~~~g~~~~A~kL---i~ia~~yGFDGw~iN~E~~~~~~~~~~~l 120 (311)
T PF03644_consen 47 WIDAAHRN-GVKVLGTIIFEWGGG--AEWCEELLEKDEDGSFPYADKL---IEIAKYYGFDGWLINIETPLSGPEDAENL 120 (311)
T ss_dssp HHHHHHHT-T--EEEEEEEEEE----HHHHHHHT---TTS--HHHHHH---HHHHHHHT--EEEEEEEESSTTGGGHHHH
T ss_pred hHHHHHhc-CceEEEEEEecCCch--HHHHHHHHcCCcccccHHHHHH---HHHHHHcCCCceEEEecccCCchhHHHHH
Confidence 45567787 999974442 23221 23333332 6777 99999999999999998753210111223
Q ss_pred chHHHHHHhhc
Q psy13762 179 YVLVKSAKHHL 189 (190)
Q Consensus 179 ~~ll~~ir~~l 189 (190)
-.+|++||+.+
T Consensus 121 ~~F~~~l~~~~ 131 (311)
T PF03644_consen 121 IDFLKYLRKEA 131 (311)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 46788888765
No 28
>KOG2091|consensus
Probab=93.52 E-value=0.29 Score=42.07 Aligned_cols=102 Identities=16% Similarity=0.228 Sum_probs=63.2
Q ss_pred CeEEEEEcCCccccCCCCCCCCccCCCCCCCccEEEEeeeeeeCCCceeeecCccccccccchhhHHHHHHHHHHhCCCc
Q psy13762 41 KKILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDL 120 (190)
Q Consensus 41 ~~vv~Yy~~w~~~r~g~~~~~~~~i~~~~~~~THiiyaf~~i~~~~~~i~~~d~~~d~~~~~~~~~~~~l~~lk~~np~l 120 (190)
..+.+|.+.|+.. .|++..|-.+ ++|||-=--..+... ++-......-|.+ ++ =+++++++++++
T Consensus 79 ~~vLayVTPWNs~-----Gydvakifas--kft~iSPVW~ql~~q-gs~~~v~G~hdid----~g---wiralRk~~~~l 143 (392)
T KOG2091|consen 79 GTVLAYVTPWNSH-----GYDVAKIFAS--KFTYISPVWLQLKDQ-GSDVGVYGKHDID----PG---WIRALRKSGKDL 143 (392)
T ss_pred CceEEEecCcCcc-----chhHHHHHhc--ccceecchheeehhc-CcceEEeecccCC----hH---HHHHHHHhCCCc
Confidence 4688999999754 3778888777 789885433333322 2111111112332 22 466789999999
Q ss_pred eEEEE--ecCCCCCCChhHhHHHH---------HHHHHHHHHHHHhcCCCeEEee
Q psy13762 121 NIILG--VGGFEDQKDKEKYLDLV---------IHTVGVKAAYAKQNGLAGVAMV 164 (190)
Q Consensus 121 KvllS--vGGw~~~~~s~~fs~~~---------i~si~~~~~fl~~~gfDGIDID 164 (190)
+++-= +--|+. ..+.++. .+.+ +++++++||||+-++
T Consensus 144 ~ivPR~~fd~~~~----~d~ke~l~ke~l~ekv~~tl---v~~ck~~~fdGlVle 191 (392)
T KOG2091|consen 144 HIVPRFYFDEFTS----ADLKEFLVKEALREKVGQTL---VNFCKKHGFDGLVLE 191 (392)
T ss_pred eeeceehhhhccc----hHHHHHhhhHHHHHHHHHHH---HHHHHHcCCCeeeHH
Confidence 98532 344443 3344443 5666 999999999999885
No 29
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=87.56 E-value=1 Score=38.79 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=14.3
Q ss_pred HHHHHhcCCCeEEeecC
Q psy13762 150 AAYAKQNGLAGVAMVDL 166 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDWe 166 (190)
++-+.+.||||+.+|.-
T Consensus 153 l~~l~~kGfDGvfLD~l 169 (315)
T TIGR01370 153 LDRVIAQGFDGVYLDLI 169 (315)
T ss_pred HHHHHHcCCCeEeeccc
Confidence 56777899999999974
No 30
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=84.73 E-value=6.6 Score=32.77 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhCCCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCC-CC----cch
Q psy13762 106 LYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNC-GE----KYV 180 (190)
Q Consensus 106 ~~~~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~-~~----~~~ 180 (190)
..+++...++..++..++++|+|.+. +.+.+ + ++.+.++|+|+|+|+.-.|..-.+.. .+ ...
T Consensus 85 ~~~~i~~~~~~~~~~pvi~si~g~~~----~~~~~-----~---a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~e 152 (289)
T cd02810 85 WLQDIAKAKKEFPGQPLIASVGGSSK----EDYVE-----L---ARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVAN 152 (289)
T ss_pred HHHHHHHHHhccCCCeEEEEeccCCH----HHHHH-----H---HHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHH
Confidence 33455555544357889999999733 33332 2 56677789999999998775322111 11 124
Q ss_pred HHHHHHhh
Q psy13762 181 LVKSAKHH 188 (190)
Q Consensus 181 ll~~ir~~ 188 (190)
+++++|+.
T Consensus 153 iv~~vr~~ 160 (289)
T cd02810 153 LLKAVKAA 160 (289)
T ss_pred HHHHHHHc
Confidence 67777764
No 31
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=84.20 E-value=3.8 Score=34.41 Aligned_cols=52 Identities=10% Similarity=0.161 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHhCCCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCC
Q psy13762 105 ELYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLD 169 (190)
Q Consensus 105 ~~~~~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~ 169 (190)
..++.+...++. .+..++++|+|... +.|.+ . ++.+++.|+|+|+|+.-.|.
T Consensus 76 ~~~~~~~~~~~~-~~~p~ivsi~g~~~----~~~~~----~----a~~~~~~G~d~iElN~~cP~ 127 (296)
T cd04740 76 AFLEELLPWLRE-FGTPVIASIAGSTV----EEFVE----V----AEKLADAGADAIELNISCPN 127 (296)
T ss_pred HHHHHHHHHhhc-CCCcEEEEEecCCH----HHHHH----H----HHHHHHcCCCEEEEECCCCC
Confidence 334455554433 47889999998532 33332 2 46677889999999988775
No 32
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=83.29 E-value=2.5 Score=37.69 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCCCcchHHHHHHhhcC
Q psy13762 143 IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGEKYVLVKSAKHHLK 190 (190)
Q Consensus 143 i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~~~~~ll~~ir~~l~ 190 (190)
++.+ ++.++.+|+.|+.||.|.-. ++.+..+..+||.+|+.|.
T Consensus 196 i~~i---i~~l~~~Gyrgv~iDfE~v~--~~DR~~yt~flR~~r~~l~ 238 (423)
T COG3858 196 INNI---ITLLDARGYRGVNIDFENVG--PGDRELYTDFLRQVRDALH 238 (423)
T ss_pred HHHH---HHHHHhcCcccEEechhhCC--HHHHHHHHHHHHHHHHHhc
Confidence 6777 99999999999999998643 2333335578999998873
No 33
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=80.27 E-value=14 Score=31.68 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCCCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCC----C-cchH
Q psy13762 107 YKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCG----E-KYVL 181 (190)
Q Consensus 107 ~~~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~----~-~~~l 181 (190)
...+..+++. .++.++++|+|.+. ..|.+ + +..+++.|+|+|+|+.-.|..-++..+ + ...+
T Consensus 90 ~~~i~~~~~~-~~~pvi~sI~g~~~----~e~~~-----~---a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~ei 156 (334)
T PRK07565 90 LELIRRAKEA-VDIPVIASLNGSSA----GGWVD-----Y---ARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDI 156 (334)
T ss_pred HHHHHHHHHh-cCCcEEEEeccCCH----HHHHH-----H---HHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHH
Confidence 3344445554 36899999988432 33332 2 455667799999999976432222222 1 2367
Q ss_pred HHHHHhhc
Q psy13762 182 VKSAKHHL 189 (190)
Q Consensus 182 l~~ir~~l 189 (190)
++++|+..
T Consensus 157 l~~v~~~~ 164 (334)
T PRK07565 157 LRAVKSAV 164 (334)
T ss_pred HHHHHhcc
Confidence 78887753
No 34
>KOG2806|consensus
Probab=77.86 E-value=2.4 Score=38.00 Aligned_cols=47 Identities=30% Similarity=0.339 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEeecCCCCCCCCC-CC--CcchHHHHHHhhc
Q psy13762 143 IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGN-CG--EKYVLVKSAKHHL 189 (190)
Q Consensus 143 i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~-~~--~~~~ll~~ir~~l 189 (190)
.+|+..|++|++++++.||.|+--..||+.|. |+ ..++++.++.+.+
T Consensus 371 ~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~~~~~~~~~~~~~~~~~~~~~ 420 (432)
T KOG2806|consen 371 ERSIHIKADYAKDEGLGGVAIWNIDQDDESGSLLNAALSRPQTCSICLKN 420 (432)
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccCCCCCCccccccccccceeeccccc
Confidence 78999999999999999999988899999887 55 3556777766554
No 35
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=75.43 E-value=30 Score=29.25 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCCC
Q psy13762 107 YKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDD 170 (190)
Q Consensus 107 ~~~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~~ 170 (190)
.+.+..+++..++.-+++++-|-.. .+.|.++ ++.+++.+.|+|||+.-.|..
T Consensus 87 ~~~~~~~~~~~~~~p~i~si~G~~~---~~~~~~~--------a~~~~~~gad~ielN~sCP~~ 139 (299)
T cd02940 87 LKEIRELKKDFPDKILIASIMCEYN---KEDWTEL--------AKLVEEAGADALELNFSCPHG 139 (299)
T ss_pred HHHHHHHHhhCCCCeEEEEecCCCC---HHHHHHH--------HHHHHhcCCCEEEEECCCCCC
Confidence 3445556665556778999977522 3444432 466677899999999998874
No 36
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=74.28 E-value=9.3 Score=30.53 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=29.1
Q ss_pred hCCCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCC
Q psy13762 116 SYPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSL 168 (190)
Q Consensus 116 ~np~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp 168 (190)
...+..++++|+|-+. +.|.+. .+.+++.|||||+|+=-.|
T Consensus 51 ~~~~~p~~~qi~g~~~----~~~~~a--------a~~~~~aG~d~ieln~g~p 91 (231)
T cd02801 51 NPEERPLIVQLGGSDP----ETLAEA--------AKIVEELGADGIDLNMGCP 91 (231)
T ss_pred CccCCCEEEEEcCCCH----HHHHHH--------HHHHHhcCCCEEEEeCCCC
Confidence 3468999999998643 344332 4666678999999986555
No 37
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=74.00 E-value=27 Score=31.00 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHhCCCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCCC
Q psy13762 105 ELYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDD 170 (190)
Q Consensus 105 ~~~~~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~~ 170 (190)
..+..+..+|+..|+.-+++||.|-.. .+.|.++ ++.+++.|.|+|.|+.-.|..
T Consensus 99 ~~l~~i~~~k~~~~~~pvIaSi~~~~s---~~~~~~~--------a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 99 TMLAEFKQLKEEYPDRILIASIMEEYN---KDAWEEI--------IERVEETGVDALEINFSCPHG 153 (385)
T ss_pred HHHHHHHHHHhhCCCCcEEEEccCCCC---HHHHHHH--------HHHHHhcCCCEEEEECCCCCC
Confidence 445566678888889999999955322 3556554 566677899999999988864
No 38
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=72.99 E-value=3.8 Score=33.68 Aligned_cols=60 Identities=23% Similarity=0.240 Sum_probs=38.4
Q ss_pred HhC-CCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCCCcchHHHHH
Q psy13762 115 TSY-PDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGEKYVLVKSA 185 (190)
Q Consensus 115 ~~n-p~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~~~~~ll~~i 185 (190)
+.. |.-|++|+++-.+.. |+..-..+++.|+++++++ |.||.+ ||.-.|. .+.+.||++|
T Consensus 193 ~g~ip~~KlvlGlp~YG~~-----w~~~~~~~~~~~~~~~~~~-~gG~~~-w~~~~d~----~~~~~l~~~~ 253 (253)
T cd06545 193 RGLASKDKLVLGLPFYGYG-----FYYNGIPTIRNKVAFAKQN-YGGVMI-WELSQDA----SGENSLLNAI 253 (253)
T ss_pred cCCCCHHHEEEEeCCcccc-----ccCCCHHHHHHHHHHHHHh-cCeEEE-EeccCCC----CCCcchhhcC
Confidence 345 889999999866541 2211134667779999999 999988 7643332 1223566553
No 39
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=71.86 E-value=23 Score=29.78 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcC-CCeEEeecCCCCCCCC-CC-CC----cc
Q psy13762 107 YKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNG-LAGVAMVDLSLDDFKG-NC-GE----KY 179 (190)
Q Consensus 107 ~~~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~g-fDGIDIDWeyp~~~~g-~~-~~----~~ 179 (190)
++.+...++.. +..+++||+|.+. +.|.+. .+.++++| +|||+|+--.|..-.| .. ++ ..
T Consensus 80 ~~~~~~~~~~~-~~p~i~si~g~~~----~~~~~~--------a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~ 146 (301)
T PRK07259 80 IEEELPWLEEF-DTPIIANVAGSTE----EEYAEV--------AEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAY 146 (301)
T ss_pred HHHHHHHHhcc-CCcEEEEeccCCH----HHHHHH--------HHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHH
Confidence 33444443333 6789999998532 444432 46667898 9999999877753221 11 11 23
Q ss_pred hHHHHHHhh
Q psy13762 180 VLVKSAKHH 188 (190)
Q Consensus 180 ~ll~~ir~~ 188 (190)
.+++++|+.
T Consensus 147 eiv~~vr~~ 155 (301)
T PRK07259 147 EVVKAVKEV 155 (301)
T ss_pred HHHHHHHHh
Confidence 567777764
No 40
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=70.62 E-value=9.2 Score=33.33 Aligned_cols=34 Identities=35% Similarity=0.476 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCC
Q psy13762 143 IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCG 176 (190)
Q Consensus 143 i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~ 176 (190)
.+|+..|+++++++|+.||-++=-.-+||+|.+.
T Consensus 313 ~~Si~~K~~~a~~~gL~Gv~iW~ld~dD~~g~~~ 346 (358)
T cd02875 313 PQSLSIKVAYAKNLGLKGIGMWNGDLLDYSGLPI 346 (358)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccccCCCch
Confidence 8899999999999999999995556688888753
No 41
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=65.82 E-value=10 Score=31.29 Aligned_cols=18 Identities=28% Similarity=0.104 Sum_probs=14.2
Q ss_pred HHHHHhcCCCeEEeecCC
Q psy13762 150 AAYAKQNGLAGVAMVDLS 167 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDWey 167 (190)
++.++++|||||+|....
T Consensus 22 l~~~~~~G~~~VEl~~~~ 39 (279)
T TIGR00542 22 LQLAKTCGFDFVEMSVDE 39 (279)
T ss_pred HHHHHHcCCCEEEEecCC
Confidence 688888899999886543
No 42
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=65.76 E-value=59 Score=27.89 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCCC-----cchH
Q psy13762 107 YKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGE-----KYVL 181 (190)
Q Consensus 107 ~~~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~~-----~~~l 181 (190)
.+++..+|+. .+.-+++||.|-+ ...|.+ + .+.+++.|+|+|+|+--.|..-++..+. ...+
T Consensus 88 ~~~i~~~~~~-~~~pvi~si~g~~----~~~~~~-----~---a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~ei 154 (325)
T cd04739 88 LELIRRAKRA-VSIPVIASLNGVS----AGGWVD-----Y---ARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDI 154 (325)
T ss_pred HHHHHHHHhc-cCCeEEEEeCCCC----HHHHHH-----H---HHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHH
Confidence 3455555543 3677999997732 234433 2 4566778999999999764221222221 1356
Q ss_pred HHHHHhhc
Q psy13762 182 VKSAKHHL 189 (190)
Q Consensus 182 l~~ir~~l 189 (190)
++++|++.
T Consensus 155 v~~v~~~~ 162 (325)
T cd04739 155 LRAVKSAV 162 (325)
T ss_pred HHHHHhcc
Confidence 77777653
No 43
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=65.05 E-value=8.7 Score=28.73 Aligned_cols=26 Identities=8% Similarity=0.255 Sum_probs=21.0
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCCeEEeec
Q psy13762 137 KYLDLVIHTVGVKAAYAKQNGLAGVAMVD 165 (190)
Q Consensus 137 ~fs~~~i~si~~~~~fl~~~gfDGIDIDW 165 (190)
.|.+-+...+ .+++++|++|||-+||
T Consensus 107 ~Y~e~~~~~i---~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 107 PYREFLLEQI---REILDRYDVDGIFFDI 132 (132)
T ss_pred cHHHHHHHHH---HHHHHcCCCCEEEecC
Confidence 4555556777 8899999999999987
No 44
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=64.97 E-value=10 Score=35.95 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=32.9
Q ss_pred HHHHHHHhCCCceEEE---EecCCCCCCC--hhHhHHHHHHHHHHHHHHH----HhcCCCeEEeecCCCCCCCCCCCCcc
Q psy13762 109 QVTALKTSYPDLNIIL---GVGGFEDQKD--KEKYLDLVIHTVGVKAAYA----KQNGLAGVAMVDLSLDDFKGNCGEKY 179 (190)
Q Consensus 109 ~l~~lk~~np~lKvll---SvGGw~~~~~--s~~fs~~~i~si~~~~~fl----~~~gfDGIDIDWeyp~~~~g~~~~~~ 179 (190)
-+.+.|++||++|+.+ +.-||-.... +..+.++.+.-+ +++| +.|| +||||.-+ + ..++-..
T Consensus 117 L~~eAKkrNP~ikl~~L~W~~PgW~~~g~~~~~~~~~~~a~Y~---~~wl~ga~~~~g---l~idYvg~--~-NEr~~~~ 187 (669)
T PF02057_consen 117 LMAEAKKRNPNIKLYGLPWGFPGWVGNGWNWPYDNPQLTAYYV---VSWLLGAKKTHG---LDIDYVGI--W-NERGFDV 187 (669)
T ss_dssp HHHHHHHH-TT-EEEEEES-B-GGGGTTSS-TTSSHHHHHHHH---HHHHHHHHHHH--------EE-S----TTS---H
T ss_pred hHHHHHhhCCCCeEEEeccCCCccccCCCCCcccchhhhhHHH---HHHHHHHHHHhC---CCceEech--h-hccCCCh
Confidence 4556999999999873 4456644311 222344545555 6666 4454 45665322 1 1122233
Q ss_pred hHHHHHHhhc
Q psy13762 180 VLVKSAKHHL 189 (190)
Q Consensus 180 ~ll~~ir~~l 189 (190)
.-++.||+.|
T Consensus 188 ~~ik~lr~~l 197 (669)
T PF02057_consen 188 NYIKWLRKAL 197 (669)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4678888776
No 45
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=64.84 E-value=9.5 Score=32.66 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEee-cCCCC
Q psy13762 143 IHTVGVKAAYAKQNGLAGVAMV-DLSLD 169 (190)
Q Consensus 143 i~si~~~~~fl~~~gfDGIDID-Weyp~ 169 (190)
++-+ .+++++|.+|||.+| ..||.
T Consensus 143 ~~~v---~Eiv~~YdvDGIhlDdy~yp~ 167 (311)
T PF02638_consen 143 IDIV---KEIVKNYDVDGIHLDDYFYPP 167 (311)
T ss_pred HHHH---HHHHhcCCCCeEEeccccccc
Confidence 6667 889999999999999 66763
No 46
>PRK14706 glycogen branching enzyme; Provisional
Probab=64.17 E-value=11 Score=35.69 Aligned_cols=44 Identities=9% Similarity=0.040 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEeec-------C------CCCCCCCCCCC-cchHHHHHHhhc
Q psy13762 143 IHTVGVKAAYAKQNGLAGVAMVD-------L------SLDDFKGNCGE-KYVLVKSAKHHL 189 (190)
Q Consensus 143 i~si~~~~~fl~~~gfDGIDIDW-------e------yp~~~~g~~~~-~~~ll~~ir~~l 189 (190)
++++ .-|++++++||+-+|= . +|+.|.|..+. -..+|++|++.+
T Consensus 288 ~~~~---~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v 345 (639)
T PRK14706 288 IGSA---LKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVT 345 (639)
T ss_pred HHHH---HHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHH
Confidence 7777 8899999999998882 1 23333332221 236788887664
No 47
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=63.66 E-value=9.2 Score=27.07 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHhccc
Q psy13762 2 RAYLCFGVSLLAVLVSCGQA 21 (190)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~ 21 (190)
|++++|.+++.++|++...+
T Consensus 4 K~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 45666666665555555443
No 48
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=63.17 E-value=17 Score=28.68 Aligned_cols=45 Identities=13% Similarity=0.042 Sum_probs=34.1
Q ss_pred CceEEEEecCCCCCCChhHhHHHH------------HHHHHHHHHHHHhcCCCeEEeecCCCC
Q psy13762 119 DLNIILGVGGFEDQKDKEKYLDLV------------IHTVGVKAAYAKQNGLAGVAMVDLSLD 169 (190)
Q Consensus 119 ~lKvllSvGGw~~~~~s~~fs~~~------------i~si~~~~~fl~~~gfDGIDIDWeyp~ 169 (190)
+-++||=||||+. +....+++ +.++ ++.+.+.=|+|-.++.||++
T Consensus 103 ~~p~LIvvGg~gv---p~evye~aDynlgvg~qpHSvrAA---lAI~LDRL~~g~el~~~f~~ 159 (176)
T PRK03958 103 GEPLLIVVGAEKV---PREVYELADWNVAVGNQPHSEVAA---LAVFLDRLFEGKELEREFED 159 (176)
T ss_pred CCcEEEEEcCCCC---CHHHHhhCCEEeccCCCChHHHHH---HHHHHHHhcCCcchhhhcCC
Confidence 4579999999998 34444443 5555 78888888999999998875
No 49
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=60.21 E-value=79 Score=27.99 Aligned_cols=51 Identities=18% Similarity=0.339 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCC
Q psy13762 108 KQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLD 169 (190)
Q Consensus 108 ~~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~ 169 (190)
..+..+++..|+..+++||.|-.. .+.|.+. ++.+++.|.|+|||+--.|.
T Consensus 88 ~~~~~~~~~~~~~p~i~si~g~~~---~~~~~~~--------a~~~~~~g~d~ielN~scP~ 138 (420)
T PRK08318 88 REIRRVKRDYPDRALIASIMVECN---EEEWKEI--------APLVEETGADGIELNFGCPH 138 (420)
T ss_pred HHHHHHHhhCCCceEEEEeccCCC---HHHHHHH--------HHHHHhcCCCEEEEeCCCCC
Confidence 444556655556678999987522 2334332 45667789999999999986
No 50
>PRK12568 glycogen branching enzyme; Provisional
Probab=59.19 E-value=15 Score=35.39 Aligned_cols=46 Identities=9% Similarity=0.190 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhcCCCeEEeec-------C--------CCCCCCCCCC-CcchHHHHHHhhcC
Q psy13762 142 VIHTVGVKAAYAKQNGLAGVAMVD-------L--------SLDDFKGNCG-EKYVLVKSAKHHLK 190 (190)
Q Consensus 142 ~i~si~~~~~fl~~~gfDGIDIDW-------e--------yp~~~~g~~~-~~~~ll~~ir~~l~ 190 (190)
+++++ .-|+++|++||+-+|= . -|+++.|..+ +...+||++++.++
T Consensus 389 li~~a---~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~ 450 (730)
T PRK12568 389 LLGSA---LEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIA 450 (730)
T ss_pred HHHHH---HHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHH
Confidence 37788 8899999999999982 1 1233322212 12468888887763
No 51
>PRK05402 glycogen branching enzyme; Provisional
Probab=58.83 E-value=15 Score=35.19 Aligned_cols=20 Identities=5% Similarity=0.195 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhcCCCeEEee
Q psy13762 142 VIHTVGVKAAYAKQNGLAGVAMV 164 (190)
Q Consensus 142 ~i~si~~~~~fl~~~gfDGIDID 164 (190)
+++++ .-|+++|++||+-+|
T Consensus 385 l~~~~---~~W~~e~~iDG~R~D 404 (726)
T PRK05402 385 LVANA---LYWLEEFHIDGLRVD 404 (726)
T ss_pred HHHHH---HHHHHHhCCcEEEEC
Confidence 37777 889999999999988
No 52
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=57.58 E-value=31 Score=28.61 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=29.2
Q ss_pred HHhCCCceEEEEecCCCCCCChhHhH--HHHHHHHHHHHHHHHhc-CCCeEEeecCCCC
Q psy13762 114 KTSYPDLNIILGVGGFEDQKDKEKYL--DLVIHTVGVKAAYAKQN-GLAGVAMVDLSLD 169 (190)
Q Consensus 114 k~~np~lKvllSvGGw~~~~~s~~fs--~~~i~si~~~~~fl~~~-gfDGIDIDWeyp~ 169 (190)
++..|.-||++++-.-... ...|- ..+.+.+ ..+.+++ .|-||++ |||++
T Consensus 203 ~~~~~~~Kv~iGlpa~~~a--~~Gyv~~~~l~~~v---~~l~~~~~~~gGvm~-W~~~~ 255 (256)
T cd06546 203 AQGWDPERIVIGLLTNPDN--GQGFVPFDTLSSTL---STLRQRYPNFGGVMG-WEYFN 255 (256)
T ss_pred HcCCCcccEEEEEeccCCc--CCCccCHHHHHHHH---HHHHHhCCCCceEEE-ecccC
Confidence 3356888999999653221 11221 1112333 3445566 8999999 78875
No 53
>PRK03995 hypothetical protein; Provisional
Probab=56.75 E-value=93 Score=26.22 Aligned_cols=42 Identities=12% Similarity=0.205 Sum_probs=31.3
Q ss_pred CCceEEEEecCCCCCCChhHhHHHH--------------------HHHHHHHHHHHHhc--CCCeEEeec
Q psy13762 118 PDLNIILGVGGFEDQKDKEKYLDLV--------------------IHTVGVKAAYAKQN--GLAGVAMVD 165 (190)
Q Consensus 118 p~lKvllSvGGw~~~~~s~~fs~~~--------------------i~si~~~~~fl~~~--gfDGIDIDW 165 (190)
...+++|+|||.=+ ...|++++ .+.+ .+.+++. ++|.+-|||
T Consensus 179 ~~~~~~iGiGGgHY---apr~T~~~l~~~~~~GHi~pky~l~~~~~~~i---~~a~~ks~~~~~~~~id~ 242 (267)
T PRK03995 179 EKFKPAIGIGGGHY---APKFTKLALESEYCFGHIIPKYALDHLSEEVL---IQAIEKSTPEIDRIVIDW 242 (267)
T ss_pred cCCCEEEEECCCCc---cHHHHHHHhhCCeeEEeEccccchhcCCHHHH---HHHHHhccCCCCEEEEec
Confidence 57899999999877 56787775 2233 5556664 799999999
No 54
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=56.58 E-value=49 Score=28.19 Aligned_cols=70 Identities=13% Similarity=0.041 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhCCCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcC-CCeEEeecCCCCCCCCCC--CC----c
Q psy13762 106 LYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNG-LAGVAMVDLSLDDFKGNC--GE----K 178 (190)
Q Consensus 106 ~~~~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~g-fDGIDIDWeyp~~~~g~~--~~----~ 178 (190)
..+.+..+|+..++..+++||-|.+. ..|.+. .+.+++.+ .|.|+|+--.|.. ++.. +. .
T Consensus 79 ~~~~i~~~~~~~~~~pvI~Si~G~~~----~~~~~~--------a~~~~~~g~ad~iElN~ScPn~-~~~~~~g~d~~~~ 145 (310)
T PRK02506 79 YLDYVLELQKKGPNKPHFLSVVGLSP----EETHTI--------LKKIQASDFNGLVELNLSCPNV-PGKPQIAYDFETT 145 (310)
T ss_pred HHHHHHHHHhhcCCCCEEEEEEeCcH----HHHHHH--------HHHHhhcCCCCEEEEECCCCCC-CCccccccCHHHH
Confidence 34455556665557889999988654 455433 34456777 7999999988853 3321 21 2
Q ss_pred chHHHHHHhh
Q psy13762 179 YVLVKSAKHH 188 (190)
Q Consensus 179 ~~ll~~ir~~ 188 (190)
..+++++|+.
T Consensus 146 ~~i~~~v~~~ 155 (310)
T PRK02506 146 EQILEEVFTY 155 (310)
T ss_pred HHHHHHHHHh
Confidence 3567777764
No 55
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=56.45 E-value=42 Score=28.56 Aligned_cols=40 Identities=10% Similarity=0.019 Sum_probs=28.9
Q ss_pred CCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCC
Q psy13762 118 PDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLD 169 (190)
Q Consensus 118 p~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~ 169 (190)
.+..+.+.++|-+- +.|.+ . ++.+++.|+|||||+=-.|.
T Consensus 61 ~~~p~i~ql~g~~~----~~~~~----a----a~~~~~~G~d~IelN~gcP~ 100 (319)
T TIGR00737 61 DETPISVQLFGSDP----DTMAE----A----AKINEELGADIIDINMGCPV 100 (319)
T ss_pred ccceEEEEEeCCCH----HHHHH----H----HHHHHhCCCCEEEEECCCCH
Confidence 46778899999643 33433 2 46778899999999887773
No 56
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=54.69 E-value=29 Score=29.95 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=29.1
Q ss_pred CCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCC
Q psy13762 118 PDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLD 169 (190)
Q Consensus 118 p~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~ 169 (190)
.+..+.+.|+|-+- +.|.+ . +..+++.|||||||+=-.|.
T Consensus 63 ~e~p~~vQl~g~~p----~~~~~----a----A~~~~~~g~d~IdlN~gCP~ 102 (333)
T PRK11815 63 EEHPVALQLGGSDP----ADLAE----A----AKLAEDWGYDEINLNVGCPS 102 (333)
T ss_pred CCCcEEEEEeCCCH----HHHHH----H----HHHHHhcCCCEEEEcCCCCH
Confidence 36789999999643 33332 2 46778899999999987774
No 57
>PRK12313 glycogen branching enzyme; Provisional
Probab=53.99 E-value=25 Score=33.08 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhcCCCeEEee
Q psy13762 142 VIHTVGVKAAYAKQNGLAGVAMV 164 (190)
Q Consensus 142 ~i~si~~~~~fl~~~gfDGIDID 164 (190)
+++++ .-|+++|++||+-+|
T Consensus 290 l~~~~---~~W~~~~~iDG~R~D 309 (633)
T PRK12313 290 LISSA---LFWLDEYHLDGLRVD 309 (633)
T ss_pred HHHHH---HHHHHHhCCcEEEEc
Confidence 36777 888999999999998
No 58
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=53.47 E-value=11 Score=33.76 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCCCcchHHHHHHhhc
Q psy13762 143 IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGEKYVLVKSAKHHL 189 (190)
Q Consensus 143 i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~~~~~ll~~ir~~l 189 (190)
.+|++-|.++++.++|.|+.+ ||--.| ..-.||+++++.|
T Consensus 397 ~rSvkaK~eYv~~n~LGG~m~-We~sgD------~n~~llna~~~~l 436 (441)
T COG3325 397 PRSVKAKAEYVADNNLGGMMF-WEISGD------ENGVLLNAVNEGL 436 (441)
T ss_pred CcchhhHHHHHhhcCccceEE-EEecCC------cchhHHHHhhccc
Confidence 678888999999999999966 854222 1446899999875
No 59
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=53.28 E-value=20 Score=31.43 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=14.6
Q ss_pred HHHHHhcCCCeEEeecCC
Q psy13762 150 AAYAKQNGLAGVAMVDLS 167 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDWey 167 (190)
...+++-|||||+|.=-+
T Consensus 150 A~~a~~aGfDgVeih~ah 167 (361)
T cd04747 150 AADARRLGFDGIELHGAH 167 (361)
T ss_pred HHHHHHcCCCEEEEeccc
Confidence 567788899999998644
No 60
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=52.62 E-value=23 Score=30.61 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=25.6
Q ss_pred HHHHHhcCCCeEEeecCC---------C------CCCCCCCCCcc----hHHHHHHhh
Q psy13762 150 AAYAKQNGLAGVAMVDLS---------L------DDFKGNCGEKY----VLVKSAKHH 188 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDWey---------p------~~~~g~~~~~~----~ll~~ir~~ 188 (190)
...+++-|||||+|.=-+ | |+|.|+-.++. .+|++||++
T Consensus 158 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~ 215 (338)
T cd02933 158 ARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEA 215 (338)
T ss_pred HHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHH
Confidence 477788899999997654 3 56655432332 456777765
No 61
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=50.56 E-value=28 Score=30.52 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=14.4
Q ss_pred HHHHHhcCCCeEEeecCC
Q psy13762 150 AAYAKQNGLAGVAMVDLS 167 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDWey 167 (190)
...+++-|||||+|.=-+
T Consensus 156 A~ra~~aGfDgVEih~ah 173 (370)
T cd02929 156 ALRARDAGFDIVYVYAAH 173 (370)
T ss_pred HHHHHHcCCCEEEEcccc
Confidence 467778899999997654
No 62
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=50.20 E-value=26 Score=30.37 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=13.9
Q ss_pred HHHHHhcCCCeEEeecC
Q psy13762 150 AAYAKQNGLAGVAMVDL 166 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDWe 166 (190)
.+.+++-|||||+|.=-
T Consensus 148 A~~a~~aGfDgVeih~a 164 (337)
T PRK13523 148 AVRAKEAGFDVIEIHGA 164 (337)
T ss_pred HHHHHHcCCCEEEEccc
Confidence 47778889999999754
No 63
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=49.54 E-value=47 Score=27.52 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHhCCCceEEEEecCCCCCCChhHhHHHHHHHH-HHHHHHHHhcCCCeEEeec
Q psy13762 104 HELYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLVIHTV-GVKAAYAKQNGLAGVAMVD 165 (190)
Q Consensus 104 ~~~~~~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~i~si-~~~~~fl~~~gfDGIDIDW 165 (190)
+..+++..++.++| ++ .++.|||- |..+..++. .+=++.+++.|||.|.|.-
T Consensus 40 ~~~l~eki~la~~~-~V--~v~~GGtl-------~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~ 92 (237)
T TIGR03849 40 RDIVKEKIEMYKDY-GI--KVYPGGTL-------FEIAHSKGKFDEYLNECDELGFEAVEISD 92 (237)
T ss_pred HHHHHHHHHHHHHc-CC--eEeCCccH-------HHHHHHhhhHHHHHHHHHHcCCCEEEEcC
Confidence 35677777777666 44 55778852 222322222 1115699999999999864
No 64
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=48.14 E-value=69 Score=26.83 Aligned_cols=57 Identities=21% Similarity=0.188 Sum_probs=34.4
Q ss_pred CceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhc--CCCeEEeecCCCCCCCCCC---CC----cchHHHHHHhh
Q psy13762 119 DLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQN--GLAGVAMVDLSLDDFKGNC---GE----KYVLVKSAKHH 188 (190)
Q Consensus 119 ~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~--gfDGIDIDWeyp~~~~g~~---~~----~~~ll~~ir~~ 188 (190)
+..++++|.|-+. +.|.+ + ++.+++. +.|+|||+.-.|.. .+.. +. ...+++++|+.
T Consensus 90 ~~pl~~qi~g~~~----~~~~~-----~---a~~~~~~~~~~d~ielN~~cP~~-~~~g~~l~~~~~~~~eiv~~vr~~ 155 (300)
T TIGR01037 90 PTPLIASVYGSSV----EEFAE-----V---AEKLEKAPPYVDAYELNLSCPHV-KGGGIAIGQDPELSADVVKAVKDK 155 (300)
T ss_pred CCcEEEEeecCCH----HHHHH-----H---HHHHHhccCccCEEEEECCCCCC-CCCccccccCHHHHHHHHHHHHHh
Confidence 4679999987532 33332 2 4555554 49999999988853 2211 11 23567777765
No 65
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=48.04 E-value=30 Score=29.73 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=30.0
Q ss_pred CCCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCCC
Q psy13762 117 YPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDD 170 (190)
Q Consensus 117 np~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~~ 170 (190)
..+..+.+.|+|-+- ..|.+ . +..+.++|+|+|||+==.|..
T Consensus 52 ~~e~p~~vQl~g~~p----~~~~~----a----A~~~~~~g~d~IDlN~GCP~~ 93 (318)
T TIGR00742 52 PEESPVALQLGGSDP----NDLAK----C----AKIAEKRGYDEINLNVGCPSD 93 (318)
T ss_pred CCCCcEEEEEccCCH----HHHHH----H----HHHHHhCCCCEEEEECCCCHH
Confidence 346778999998643 33433 2 467778999999999977743
No 66
>KOG0781|consensus
Probab=47.99 E-value=1.4e+02 Score=27.74 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCCCcchHHHHHHh
Q psy13762 143 IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGEKYVLVKSAKH 187 (190)
Q Consensus 143 i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~~~~~ll~~ir~ 187 (190)
+..+ +++.++.|||=|-||= .|...+.-||++.|..
T Consensus 455 ak~A---I~~a~~~gfDVvLiDT------AGR~~~~~~lm~~l~k 490 (587)
T KOG0781|consen 455 AKEA---IQEARNQGFDVVLIDT------AGRMHNNAPLMTSLAK 490 (587)
T ss_pred HHHH---HHHHHhcCCCEEEEec------cccccCChhHHHHHHH
Confidence 4555 9999999999999987 5665556677777654
No 67
>PRK14705 glycogen branching enzyme; Provisional
Probab=47.87 E-value=28 Score=35.58 Aligned_cols=45 Identities=9% Similarity=0.228 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcCCCeEEeecC---------------CCCCCCCCCC-CcchHHHHHHhhc
Q psy13762 142 VIHTVGVKAAYAKQNGLAGVAMVDL---------------SLDDFKGNCG-EKYVLVKSAKHHL 189 (190)
Q Consensus 142 ~i~si~~~~~fl~~~gfDGIDIDWe---------------yp~~~~g~~~-~~~~ll~~ir~~l 189 (190)
+++++ .-|+++|++||+-+|=- .|+.|.|..+ +...+|+++.+.+
T Consensus 885 li~~a---~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v 945 (1224)
T PRK14705 885 LVANA---LYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATV 945 (1224)
T ss_pred HHHHH---HHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHH
Confidence 37888 88999999999888741 2333433322 1246788777654
No 68
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=46.88 E-value=23 Score=27.61 Aligned_cols=23 Identities=48% Similarity=0.619 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCCCeEEeecCC
Q psy13762 144 HTVGVKAAYAKQNGLAGVAMVDLS 167 (190)
Q Consensus 144 ~si~~~~~fl~~~gfDGIDIDWey 167 (190)
-|++.|+++++++++-||.| |++
T Consensus 185 ~s~~~k~~~~~~~~~gGv~~-w~~ 207 (210)
T cd00598 185 YSLGAKAKYAKQKGLGGVMI-WEL 207 (210)
T ss_pred hhHHHHHHHHHHcCCceEEE-Eec
Confidence 38889999999999999988 654
No 69
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=45.26 E-value=35 Score=31.99 Aligned_cols=21 Identities=10% Similarity=0.197 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhcCCCeEEeec
Q psy13762 142 VIHTVGVKAAYAKQNGLAGVAMVD 165 (190)
Q Consensus 142 ~i~si~~~~~fl~~~gfDGIDIDW 165 (190)
+++++ .-|+++|++||+-+|=
T Consensus 276 l~~~~---~~W~~ey~iDG~R~D~ 296 (613)
T TIGR01515 276 LVANA---LYWAEFYHIDGLRVDA 296 (613)
T ss_pred HHHHH---HHHHHHhCCcEEEEcC
Confidence 37777 8899999999999984
No 70
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=45.05 E-value=33 Score=30.21 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=13.8
Q ss_pred HHHHHhcCCCeEEeec
Q psy13762 150 AAYAKQNGLAGVAMVD 165 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDW 165 (190)
.+.+++-|||||+|.-
T Consensus 156 A~ra~~AGfDgVEih~ 171 (382)
T cd02931 156 AVIAKEAGFDGVEIHA 171 (382)
T ss_pred HHHHHHcCCCEEEEec
Confidence 4677788999999987
No 71
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=42.86 E-value=39 Score=27.75 Aligned_cols=15 Identities=40% Similarity=0.348 Sum_probs=10.3
Q ss_pred HHHHHhcCCCeEEee
Q psy13762 150 AAYAKQNGLAGVAMV 164 (190)
Q Consensus 150 ~~fl~~~gfDGIDID 164 (190)
++.+++.|||||+|+
T Consensus 27 ~~~~~~~G~~~iEl~ 41 (283)
T PRK13209 27 LAIAKTAGFDFVEMS 41 (283)
T ss_pred HHHHHHcCCCeEEEe
Confidence 566677777777774
No 72
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=42.77 E-value=30 Score=28.78 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHhCCCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeec
Q psy13762 104 HELYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVD 165 (190)
Q Consensus 104 ~~~~~~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDW 165 (190)
++.+++..++-++| -|.++.|||-. -..+.+-.++.. ++.+++.|||.|.|.-
T Consensus 53 ~~~l~eki~l~~~~---gV~v~~GGtl~---E~a~~q~~~~~y---l~~~k~lGf~~IEiSd 105 (244)
T PF02679_consen 53 EEILKEKIDLAHSH---GVYVYPGGTLF---EVAYQQGKFDEY---LEECKELGFDAIEISD 105 (244)
T ss_dssp CHHHHHHHHHHHCT---T-EEEE-HHHH---HHHHHTT-HHHH---HHHHHHCT-SEEEE--
T ss_pred HHHHHHHHHHHHHc---CCeEeCCcHHH---HHHHhcChHHHH---HHHHHHcCCCEEEecC
Confidence 35677777776665 56668899743 111111114555 7999999999999965
No 73
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=42.22 E-value=38 Score=28.60 Aligned_cols=52 Identities=27% Similarity=0.452 Sum_probs=34.8
Q ss_pred HHhCCCceEEEEecCCCCC----CCh--hHhH--H--H----HHHHHHHHHHHHHhcCCCeEEeecC
Q psy13762 114 KTSYPDLNIILGVGGFEDQ----KDK--EKYL--D--L----VIHTVGVKAAYAKQNGLAGVAMVDL 166 (190)
Q Consensus 114 k~~np~lKvllSvGGw~~~----~~s--~~fs--~--~----~i~si~~~~~fl~~~gfDGIDIDWe 166 (190)
++.-|.-|++|+|.-.+.. ++. ..|. . - -.+|++.|+++++++||-||.+ |+
T Consensus 224 ~~g~p~~KlvlGvp~YGr~~~~~D~~~~~~y~~~~~~wi~ydd~~Si~~K~~~a~~~~lgGv~~-W~ 289 (299)
T cd02879 224 KAGVPAKKLVLGLPLYGRAWTLYDTTTVSSYVYAGTTWIGYDDVQSIAVKVKYAKQKGLLGYFA-WA 289 (299)
T ss_pred HcCCCHHHEEEEeccccccccccCCCcceEEEEECCEEEEeCCHHHHHHHHHHHHhCCCCeEEE-EE
Confidence 3445788999999754431 100 0110 0 0 1889999999999999999988 54
No 74
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=40.91 E-value=37 Score=29.47 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.2
Q ss_pred HHHHHhcCCCeEEeec
Q psy13762 150 AAYAKQNGLAGVAMVD 165 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDW 165 (190)
.+.+++-|||||+|.=
T Consensus 150 A~~a~~aGfDgVeih~ 165 (353)
T cd04735 150 TRRAIEAGFDGVEIHG 165 (353)
T ss_pred HHHHHHcCCCEEEEcc
Confidence 4667788999999974
No 75
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=40.49 E-value=32 Score=29.23 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEeecC
Q psy13762 143 IHTVGVKAAYAKQNGLAGVAMVDL 166 (190)
Q Consensus 143 i~si~~~~~fl~~~gfDGIDIDWe 166 (190)
.+|++.|++|++++||.|+.| |+
T Consensus 296 ~~Si~~K~~~a~~~~LgGv~~-W~ 318 (322)
T cd06548 296 PRSIKAKADYVKDKGLGGVMF-WE 318 (322)
T ss_pred HHHHHHHHHHHHhcCCccEEE-Ee
Confidence 899999999999999999988 54
No 76
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=40.28 E-value=33 Score=29.57 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhcCCCeEEee
Q psy13762 143 IHTVGVKAAYAKQNGLAGVAMV 164 (190)
Q Consensus 143 i~si~~~~~fl~~~gfDGIDID 164 (190)
.+|++.|++|+++++|-|+.++
T Consensus 319 ~~Si~~K~~y~~~~~LgGv~~W 340 (345)
T cd02878 319 PATKAARIEWYKGLNFGGTSDW 340 (345)
T ss_pred HHHHHHHHHHHHhCCCceEEEe
Confidence 7899999999999999999883
No 77
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=40.27 E-value=37 Score=29.15 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=26.0
Q ss_pred HHHHHhcCCCeEEeecCC---------C------CCCCCCCCC--cc--hHHHHHHhhc
Q psy13762 150 AAYAKQNGLAGVAMVDLS---------L------DDFKGNCGE--KY--VLVKSAKHHL 189 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDWey---------p------~~~~g~~~~--~~--~ll~~ir~~l 189 (190)
.+.+++.|||||+|.=-+ | |+|.|+-.+ .+ .+|++||+++
T Consensus 155 A~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~av 213 (338)
T cd04733 155 ARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAV 213 (338)
T ss_pred HHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHc
Confidence 567889999999997533 3 456443222 22 4688888764
No 78
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=40.22 E-value=94 Score=24.80 Aligned_cols=48 Identities=21% Similarity=0.113 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCC
Q psy13762 106 LYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLS 167 (190)
Q Consensus 106 ~~~~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWey 167 (190)
.+..+..+|+.+|++++.++.+-.-.+ ..+ ++|++++|+++|-+.-|-
T Consensus 23 ~~g~~~~~k~~~~~~~i~~~~~~nv~N----------~~s----~~~~~~~G~~~i~ls~EL 70 (233)
T PF01136_consen 23 NPGLLELLKELGPDLKIIADYSLNVFN----------SES----ARFLKELGASRITLSPEL 70 (233)
T ss_pred CHHHHHHHHHhCCCCcEEEecCccCCC----------HHH----HHHHHHcCCCEEEECccC
Confidence 355677789999999999988765443 122 588888888888887754
No 79
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=39.37 E-value=1.5e+02 Score=24.97 Aligned_cols=70 Identities=7% Similarity=0.006 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhC--CCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhc---CCCeEEeecCCCCCCCCCC--CC-
Q psy13762 106 LYKQVTALKTSY--PDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQN---GLAGVAMVDLSLDDFKGNC--GE- 177 (190)
Q Consensus 106 ~~~~l~~lk~~n--p~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~---gfDGIDIDWeyp~~~~g~~--~~- 177 (190)
.+..+..+|+.. ++.-+++||+|- . +.|. +.+ +.+.++ +.|+|||+--.|.. +|.. +.
T Consensus 76 ~~~~i~~~~~~~~~~~~pvivsi~g~-~----~~~~----~~~----~~~~~~~~~~ad~ielN~sCPn~-~~~~~~~~~ 141 (294)
T cd04741 76 YLEYIRTISDGLPGSAKPFFISVTGS-A----EDIA----AMY----KKIAAHQKQFPLAMELNLSCPNV-PGKPPPAYD 141 (294)
T ss_pred HHHHHHHHhhhccccCCeEEEECCCC-H----HHHH----HHH----HHHHhhccccccEEEEECCCCCC-CCcccccCC
Confidence 344555555432 467799999875 2 3333 333 334444 69999999988864 3331 11
Q ss_pred ---cchHHHHHHhhc
Q psy13762 178 ---KYVLVKSAKHHL 189 (190)
Q Consensus 178 ---~~~ll~~ir~~l 189 (190)
...+++++|+..
T Consensus 142 ~~~~~~i~~~v~~~~ 156 (294)
T cd04741 142 FDATLEYLTAVKAAY 156 (294)
T ss_pred HHHHHHHHHHHHHhc
Confidence 235677777653
No 80
>PF11909 NdhN: NADH-quinone oxidoreductase cyanobacterial subunit N; InterPro: IPR020874 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit N. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0016020 membrane
Probab=38.75 E-value=32 Score=26.36 Aligned_cols=27 Identities=15% Similarity=0.349 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhCCCceEEEEecCCCC
Q psy13762 105 ELYKQVTALKTSYPDLNIILGVGGFED 131 (190)
Q Consensus 105 ~~~~~l~~lk~~np~lKvllSvGGw~~ 131 (190)
..+..+..|-+..|.+||++-+|||..
T Consensus 119 ~El~~L~~Lp~~ePrvKvVvE~Gg~R~ 145 (154)
T PF11909_consen 119 QELEYLCNLPQREPRVKVVVEMGGDRS 145 (154)
T ss_pred HHHHHHHhccccCCCeEEEEEeCCcee
Confidence 446678888889999999999999853
No 81
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=36.89 E-value=36 Score=28.83 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEeecC
Q psy13762 143 IHTVGVKAAYAKQNGLAGVAMVDL 166 (190)
Q Consensus 143 i~si~~~~~fl~~~gfDGIDIDWe 166 (190)
.+|++.|+++++++|+ |+.| |+
T Consensus 285 ~~Si~~K~~~a~~~~l-Gv~~-W~ 306 (318)
T cd02876 285 LKSIQLRLDLAKELGT-GISI-WE 306 (318)
T ss_pred HHHHHHHHHHHHHcCC-cEEE-Ec
Confidence 8999999999999999 9876 74
No 82
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=36.72 E-value=64 Score=26.37 Aligned_cols=15 Identities=33% Similarity=0.403 Sum_probs=12.6
Q ss_pred HHHHHhcCCCeEEee
Q psy13762 150 AAYAKQNGLAGVAMV 164 (190)
Q Consensus 150 ~~fl~~~gfDGIDID 164 (190)
++.+++.|||||+|.
T Consensus 22 ~~~~~~~G~~~iEl~ 36 (284)
T PRK13210 22 LVFAKELGFDFVEMS 36 (284)
T ss_pred HHHHHHcCCCeEEEe
Confidence 688888899998884
No 83
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=36.50 E-value=43 Score=28.36 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhcCCCeEEee
Q psy13762 143 IHTVGVKAAYAKQNGLAGVAMV 164 (190)
Q Consensus 143 i~si~~~~~fl~~~gfDGIDID 164 (190)
.+|+..|+++++++|+.||-|+
T Consensus 308 ~~Si~~K~~~~~~~~lgGv~iW 329 (334)
T smart00636 308 PRSIKAKADYVKDKGLGGVMIW 329 (334)
T ss_pred HHHHHHHHHHHHhCCCCeEEEE
Confidence 8899999999999999999883
No 84
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=36.31 E-value=45 Score=27.99 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhcCCCeEEee
Q psy13762 143 IHTVGVKAAYAKQNGLAGVAMV 164 (190)
Q Consensus 143 i~si~~~~~fl~~~gfDGIDID 164 (190)
.+|+..|+++++++||-||-++
T Consensus 317 ~~Si~~K~~~v~~~glgGv~~W 338 (343)
T PF00704_consen 317 PRSIKAKMDYVKEKGLGGVAIW 338 (343)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEE
Confidence 7899999999999999999884
No 85
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=36.19 E-value=53 Score=28.44 Aligned_cols=40 Identities=23% Similarity=0.483 Sum_probs=25.1
Q ss_pred HHHHHhcCCCeEEeecC---------CC------CCCCCCCCCc----chHHHHHHhhc
Q psy13762 150 AAYAKQNGLAGVAMVDL---------SL------DDFKGNCGEK----YVLVKSAKHHL 189 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDWe---------yp------~~~~g~~~~~----~~ll~~ir~~l 189 (190)
.+.+++-|||||+|.-- .| |+|.|+-.++ ..++++||+++
T Consensus 143 A~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~v 201 (353)
T cd02930 143 AALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAV 201 (353)
T ss_pred HHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHc
Confidence 46677789999999762 12 4565542222 24677787764
No 86
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=35.36 E-value=43 Score=21.85 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=22.2
Q ss_pred cCCCCCCChhHhHHHHHHHHHHHHHHHHhcC----CCeEEeecC
Q psy13762 127 GGFEDQKDKEKYLDLVIHTVGVKAAYAKQNG----LAGVAMVDL 166 (190)
Q Consensus 127 GGw~~~~~s~~fs~~~i~si~~~~~fl~~~g----fDGIDIDWe 166 (190)
-||+-.--=..|-.++.-.+ +-+++-|+ +|||+++|+
T Consensus 23 PGWGTTplMgv~m~Lf~vFl---~iiLeIYNsSvlLdgv~v~w~ 63 (64)
T PRK02624 23 PGWGTTPVMAVFMVLFLVFL---LIILQIYNQSLLLQGFSVDWN 63 (64)
T ss_pred CCccchHHHHHHHHHHHHHH---HHHHHHhCcceeecCcccCcC
Confidence 57765100022333445566 66777776 899999995
No 87
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=35.13 E-value=46 Score=27.73 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=16.2
Q ss_pred HHHHHH-HHHhCCCceEEEEec
Q psy13762 107 YKQVTA-LKTSYPDLNIILGVG 127 (190)
Q Consensus 107 ~~~l~~-lk~~np~lKvllSvG 127 (190)
+.++.+ |++.||++||+++|-
T Consensus 154 l~~~~~~l~~~nP~~kiilTVS 175 (251)
T PF08885_consen 154 LEAIIDLLRSINPDIKIILTVS 175 (251)
T ss_pred HHHHHHHHHhhCCCceEEEEec
Confidence 334444 888999999999994
No 88
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=34.80 E-value=89 Score=30.98 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEeec
Q psy13762 140 DLVIHTVGVKAAYAKQNGLAGVAMVD 165 (190)
Q Consensus 140 ~~~i~si~~~~~fl~~~gfDGIDIDW 165 (190)
+.+++++ .-|+++|++||+-+|-
T Consensus 475 k~iiDsl---~~W~~ey~VDGFRfDl 497 (898)
T TIGR02103 475 KLIVDSL---VVWAKDYKVDGFRFDL 497 (898)
T ss_pred HHHHHHH---HHHHHHcCCCEEEEec
Confidence 3348888 8999999999999987
No 89
>PRK15364 pathogenicity island 2 effector protein SseB; Provisional
Probab=34.79 E-value=36 Score=27.02 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhcCC--CeEEeec
Q psy13762 143 IHTVGVKAAYAKQNGL--AGVAMVD 165 (190)
Q Consensus 143 i~si~~~~~fl~~~gf--DGIDIDW 165 (190)
.+.+ ++|++++|+ ||+.||=
T Consensus 100 PddV---I~YmrdNgI~VdG~sid~ 121 (196)
T PRK15364 100 PEDV---IKYMRDNGILIDGMTIDD 121 (196)
T ss_pred CHHH---HHHHHHcCceecccchHH
Confidence 5666 999999985 9998854
No 90
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=34.68 E-value=48 Score=28.57 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=24.5
Q ss_pred HHHHHhcCCCeEEeecCC---------------CCCCCCCCCCcc----hHHHHHHhh
Q psy13762 150 AAYAKQNGLAGVAMVDLS---------------LDDFKGNCGEKY----VLVKSAKHH 188 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDWey---------------p~~~~g~~~~~~----~ll~~ir~~ 188 (190)
...+++=|||||.|.=-+ .|+|.|+-.++. .++++||++
T Consensus 155 A~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~ 212 (341)
T PF00724_consen 155 ARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREA 212 (341)
T ss_dssp HHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHH
Confidence 577888999999997633 256655433332 456777765
No 91
>KOG4824|consensus
Probab=34.63 E-value=95 Score=25.19 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhccccccccccccccCCCCCCCCCeEEEEEcCCccccCCCCCCCCccCCCCC---CCccEEEEeee
Q psy13762 4 YLCFGVSLLAVLVSCGQAATKSKVKYIPINLEDNPPPKKILCYYNHEAYKREGKGKVATEELRPAL---TTCTHLVYAYA 80 (190)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~Yy~~w~~~r~g~~~~~~~~i~~~~---~~~THiiyaf~ 80 (190)
-+|++++..++|+..++.++-.--+. ++++ ......+.-|...| |.++.++... ..||.-.|.|.
T Consensus 8 ~~~~~l~~~a~L~~~a~gqa~~lg~c--pnyp-v~knFnv~RylGrW---------YEVas~p~~fe~~~gctt~~y~~~ 75 (224)
T KOG4824|consen 8 RKCFVLGFAAILLLSAAGQAIALGEC--PNYP-VAKNFNVERYLGRW---------YEVASFPRGFEGKGGCTTGAYTFD 75 (224)
T ss_pred HHHHHHHHHHHHHhhcccceEeeccC--CCCc-cccCCChhhhccee---------eeeeccccccccCCCceeeeeEec
Confidence 36777777777776554332211111 1122 23334455566556 3333333321 24999999885
No 92
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=34.32 E-value=1.7e+02 Score=22.66 Aligned_cols=52 Identities=17% Similarity=0.361 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHhCCCceEEEEecCCCCCCChhHhHHHH----HHHHHHHHHHHHhcCCCe
Q psy13762 104 HELYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLV----IHTVGVKAAYAKQNGLAG 160 (190)
Q Consensus 104 ~~~~~~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~----i~si~~~~~fl~~~gfDG 160 (190)
+..+.++...-+.+|..+|. |-|.++..++..|-... ++++ .++|...|++.
T Consensus 85 ~~~L~~~a~~L~~~p~~~v~--I~GhtD~~Gs~~yN~~LS~~RA~aV---~~~L~~~Gv~~ 140 (173)
T PRK10802 85 AQMLDAHANFLRSNPSYKVT--VEGHADERGTPEYNIALGERRANAV---KMYLQGKGVSA 140 (173)
T ss_pred HHHHHHHHHHHHhCCCceEE--EEEecCCCCChHHHHHHHHHHHHHH---HHHHHHcCCCH
Confidence 46677777766678888764 66887754455553322 7788 99999988765
No 93
>KOG2796|consensus
Probab=34.12 E-value=53 Score=28.16 Aligned_cols=32 Identities=9% Similarity=0.009 Sum_probs=24.4
Q ss_pred HHHHHhcCCCeEEeecCC-CCCCCCCCCCcchH
Q psy13762 150 AAYAKQNGLAGVAMVDLS-LDDFKGNCGEKYVL 181 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDWey-p~~~~g~~~~~~~l 181 (190)
.++---++|||=|+.+|| |.-||+..|...|+
T Consensus 90 ~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPF 122 (366)
T KOG2796|consen 90 MELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPF 122 (366)
T ss_pred hhhhhhccCCCcceeeeeccccCCCCcCccccH
Confidence 566677899999999995 56688877765544
No 94
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=33.41 E-value=40 Score=19.51 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=7.4
Q ss_pred ChhHHH-HHHHHHH
Q psy13762 1 MRAYLC-FGVSLLA 13 (190)
Q Consensus 1 ~~~~~~-~~~~~~~ 13 (190)
||.+++ +.+.+++
T Consensus 1 Mk~l~~a~~l~lLa 14 (36)
T PF08194_consen 1 MKCLSLAFALLLLA 14 (36)
T ss_pred CceeHHHHHHHHHH
Confidence 777766 4444444
No 95
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=33.10 E-value=85 Score=28.82 Aligned_cols=58 Identities=9% Similarity=0.165 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCceEEEEe---cCC------------CCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCC
Q psy13762 107 YKQVTALKTSYPDLNIILGV---GGF------------EDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLS 167 (190)
Q Consensus 107 ~~~l~~lk~~np~lKvllSv---GGw------------~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWey 167 (190)
+.-+.++++.||++|++.|- =+| -.+.....|.+..++-. ++|++.|.=-||+|+=.-
T Consensus 156 ip~ik~a~~~~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~---vkfi~aY~~~GI~i~aiT 228 (496)
T PF02055_consen 156 IPLIKEALAINPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYF---VKFIQAYKKEGIPIWAIT 228 (496)
T ss_dssp HHHHHHHHHHHTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHH---HHHHHHHHCTT--ESEEE
T ss_pred HHHHHHHHHhCCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHH---HHHHHHHHHCCCCeEEEe
Confidence 34455677788999999886 122 11000135777778889 999999988888886643
No 96
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=32.69 E-value=2.4e+02 Score=23.42 Aligned_cols=54 Identities=11% Similarity=0.282 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHhCCCceEEEEecCCCCCC-ChhHhHHHHHHHHHHHHHHHH-----hcCCCeEEee
Q psy13762 105 ELYKQVTALKTSYPDLNIILGVGGFEDQK-DKEKYLDLVIHTVGVKAAYAK-----QNGLAGVAMV 164 (190)
Q Consensus 105 ~~~~~l~~lk~~np~lKvllSvGGw~~~~-~s~~fs~~~i~si~~~~~fl~-----~~gfDGIDID 164 (190)
.....+.+|+ ++|++|++ |.-..+ .+...+++ ...+..=..|-. .+++|||-||
T Consensus 54 ~Y~~~i~~L~-~~~nv~vl----GYV~T~Yg~R~~~~V-~~dI~~Y~~W~~~~~~~~~~vdGIFfD 113 (253)
T PF12138_consen 54 NYAAAIPRLN-SYANVRVL----GYVHTSYGSRPLSEV-KADIDTYASWYGQSEDYGYRVDGIFFD 113 (253)
T ss_pred HHHHHHHHHH-hcCCCcEE----EEEEccccCCCHHHH-HHHHHHHhhccccccCCCcccceEEEe
Confidence 3444555665 45799998 321100 02333333 333311133432 2789999887
No 97
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=32.27 E-value=68 Score=27.47 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=13.0
Q ss_pred HHHHHhcCCCeEEeec
Q psy13762 150 AAYAKQNGLAGVAMVD 165 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDW 165 (190)
.+.+++-|||||+|.=
T Consensus 160 A~~a~~aGfDgVei~~ 175 (336)
T cd02932 160 ARRAVEAGFDVIEIHA 175 (336)
T ss_pred HHHHHHcCCCEEEEcc
Confidence 4666778999999974
No 98
>PLN02411 12-oxophytodienoate reductase
Probab=32.18 E-value=66 Score=28.47 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=25.1
Q ss_pred HHHHHhcCCCeEEeecCC---------C------CCCCCCCCCcc----hHHHHHHhh
Q psy13762 150 AAYAKQNGLAGVAMVDLS---------L------DDFKGNCGEKY----VLVKSAKHH 188 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDWey---------p------~~~~g~~~~~~----~ll~~ir~~ 188 (190)
.+.+++-|||||.|.=-+ | |+|.|+-.++. .+|++||++
T Consensus 171 A~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~ 228 (391)
T PLN02411 171 ALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSA 228 (391)
T ss_pred HHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHH
Confidence 467778899999997522 2 56765533333 456777765
No 99
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=31.72 E-value=69 Score=26.98 Aligned_cols=24 Identities=25% Similarity=0.062 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcCCCeEEeecCC
Q psy13762 143 IHTVGVKAAYAKQNGLAGVAMVDLS 167 (190)
Q Consensus 143 i~si~~~~~fl~~~gfDGIDIDWey 167 (190)
..|+..|+++++++|+.||-+ |+.
T Consensus 267 ~~Sl~~K~~~a~~~~l~Gva~-W~l 290 (298)
T cd06549 267 AVTLFNQLKAVQRLGPAGVAL-WRL 290 (298)
T ss_pred HHHHHHHHHHHHHcCCCcEEE-Eec
Confidence 788999999999999999988 644
No 100
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=31.38 E-value=67 Score=28.07 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=24.8
Q ss_pred HHHHHhcCCCeEEeecCC---------------CCCCCCCCCCcc----hHHHHHHhh
Q psy13762 150 AAYAKQNGLAGVAMVDLS---------------LDDFKGNCGEKY----VLVKSAKHH 188 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDWey---------------p~~~~g~~~~~~----~ll~~ir~~ 188 (190)
.+.+++-|||||.|.=-+ .|+|.|+-.++. .++++||++
T Consensus 165 A~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~ 222 (362)
T PRK10605 165 IANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAE 222 (362)
T ss_pred HHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHH
Confidence 577888999999996421 256665533433 346666664
No 101
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=31.37 E-value=59 Score=27.37 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEeecC
Q psy13762 143 IHTVGVKAAYAKQNGLAGVAMVDL 166 (190)
Q Consensus 143 i~si~~~~~fl~~~gfDGIDIDWe 166 (190)
.+|+..|+++++++|+.||-+ |+
T Consensus 279 ~~Si~~K~~~~~~~~lgGv~i-W~ 301 (313)
T cd02874 279 ARSLQAKFELAKEYGLRGVSY-WR 301 (313)
T ss_pred HHHHHHHHHHHHHcCCCeEEE-EE
Confidence 789999999999999999988 43
No 102
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=31.27 E-value=33 Score=22.85 Aligned_cols=12 Identities=33% Similarity=0.910 Sum_probs=8.6
Q ss_pred CCCeEEEEEcCC
Q psy13762 39 PPKKILCYYNHE 50 (190)
Q Consensus 39 ~~~~vv~Yy~~w 50 (190)
.+++++||++--
T Consensus 48 ~G~~vicY~s~G 59 (74)
T PF03537_consen 48 QGKKVICYFSIG 59 (74)
T ss_dssp TT-EEEEEEESS
T ss_pred CCCEEEEEEeCc
Confidence 458999999843
No 103
>PF05047 L51_S25_CI-B8: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain ; InterPro: IPR007741 Proteins containing this domain are located in the mitochondrion and include ribosomal protein L51, and S25. This domain is also found in mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) 1.6.5.3 from EC. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins.; PDB: 1S3A_A.
Probab=30.79 E-value=45 Score=20.23 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=12.7
Q ss_pred HHHHHHHhCCCceEEEEe
Q psy13762 109 QVTALKTSYPDLNIILGV 126 (190)
Q Consensus 109 ~l~~lk~~np~lKvllSv 126 (190)
.+..++..||++.+.+.-
T Consensus 8 ~lp~l~~~NP~v~~~v~~ 25 (52)
T PF05047_consen 8 NLPTLKYHNPQVQFEVRR 25 (52)
T ss_dssp THHHHHHHSTT--EEEE-
T ss_pred hHHHHHHHCCCcEEEEEE
Confidence 466789999999999876
No 104
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=30.54 E-value=75 Score=21.65 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=22.3
Q ss_pred hHhHHHHHHHHHHHHHHHHhcCCCeEEeec
Q psy13762 136 EKYLDLVIHTVGVKAAYAKQNGLAGVAMVD 165 (190)
Q Consensus 136 ~~fs~~~i~si~~~~~fl~~~gfDGIDIDW 165 (190)
..+++-.++.+ ++-+..-.||||.+|=
T Consensus 49 ~~~r~~w~~~v---~e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 49 PDYRRYWVDAV---VEELQNSPWDGVFADN 75 (79)
T ss_pred chHHHHHHHHH---HHHHhcCccceeeeec
Confidence 56777778888 8888877999999874
No 105
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=29.64 E-value=65 Score=26.01 Aligned_cols=16 Identities=38% Similarity=0.389 Sum_probs=7.5
Q ss_pred HHHHHhcCCCeEEeec
Q psy13762 150 AAYAKQNGLAGVAMVD 165 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDW 165 (190)
++.+++.|||||++++
T Consensus 20 ~~~~~e~G~~~vEl~~ 35 (254)
T TIGR03234 20 FAAAAQAGFTGVEYLF 35 (254)
T ss_pred HHHHHHcCCCEEEecC
Confidence 4444444455544433
No 106
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=29.51 E-value=1.4e+02 Score=27.96 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEeec
Q psy13762 140 DLVIHTVGVKAAYAKQNGLAGVAMVD 165 (190)
Q Consensus 140 ~~~i~si~~~~~fl~~~gfDGIDIDW 165 (190)
+.+++++ .-|+++|++||+-+|=
T Consensus 298 ~~i~~~~---~~W~~e~~iDGfR~D~ 320 (605)
T TIGR02104 298 KFIVDSV---LYWVKEYNIDGFRFDL 320 (605)
T ss_pred HHHHHHH---HHHHHHcCCCEEEEec
Confidence 3447888 8899999999999985
No 107
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=28.66 E-value=1.8e+02 Score=26.41 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=36.6
Q ss_pred hhhHHHHHHH-HHHhCCCceEEEEe------------cCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeec
Q psy13762 103 GHELYKQVTA-LKTSYPDLNIILGV------------GGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVD 165 (190)
Q Consensus 103 ~~~~~~~l~~-lk~~np~lKvllSv------------GGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDW 165 (190)
|-..|+++.. |++. +++.+|.+ |||.. ...-..|++-+ ...++++| | |+.+-
T Consensus 91 gl~~Y~~lid~l~~~--GI~P~VTL~H~dlP~~L~~~GGW~n----~~~v~~F~~YA---~~~f~~fg-d-Vk~Wi 155 (467)
T TIGR01233 91 GVEFYHKLFAECHKR--HVEPFVTLHHFDTPEALHSNGDFLN----RENIEHFIDYA---AFCFEEFP-E-VNYWT 155 (467)
T ss_pred HHHHHHHHHHHHHHc--CCEEEEeccCCCCcHHHHHcCCCCC----HHHHHHHHHHH---HHHHHHhC-C-CCEEE
Confidence 3467777776 6655 89999988 78865 44555567777 66678888 8 88533
No 108
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=27.95 E-value=1.8e+02 Score=24.91 Aligned_cols=39 Identities=18% Similarity=-0.020 Sum_probs=27.7
Q ss_pred CceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCC
Q psy13762 119 DLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLD 169 (190)
Q Consensus 119 ~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~ 169 (190)
+..+.+.|+|-+- ..|.+. +..+++.|+|+|||+=-.|.
T Consensus 62 e~p~~vQl~g~~p----~~~~~a--------A~~~~~~g~d~IdiN~GCP~ 100 (312)
T PRK10550 62 GTLVRIQLLGQYP----QWLAEN--------AARAVELGSWGVDLNCGCPS 100 (312)
T ss_pred CCcEEEEeccCCH----HHHHHH--------HHHHHHcCCCEEEEeCCCCc
Confidence 4678899998543 444432 34556789999999988775
No 109
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=27.63 E-value=70 Score=27.67 Aligned_cols=16 Identities=31% Similarity=0.491 Sum_probs=13.5
Q ss_pred HHHHHhcCCCeEEeec
Q psy13762 150 AAYAKQNGLAGVAMVD 165 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDW 165 (190)
...+++-|||||+|.=
T Consensus 147 A~ra~~aGfDgVeih~ 162 (343)
T cd04734 147 ARRCQAGGLDGVELQA 162 (343)
T ss_pred HHHHHHcCCCEEEEcc
Confidence 4667788999999987
No 110
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.16 E-value=1.6e+02 Score=26.42 Aligned_cols=48 Identities=15% Similarity=0.301 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhCCCceE----EEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEee
Q psy13762 105 ELYKQVTALKTSYPDLNI----ILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMV 164 (190)
Q Consensus 105 ~~~~~l~~lk~~np~lKv----llSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDID 164 (190)
...+.+..+++..|++.+ ++++-|.+. +.|.+. ++|+++.+||.+.+.
T Consensus 284 ~~~~~v~~lr~~~pgi~i~td~IvGfPgET~----edf~~t--------l~~~~~~~~~~~~~f 335 (445)
T PRK14340 284 EYLEKIALIRSAIPGVTLSTDLIAGFCGETE----EDHRAT--------LSLMEEVRFDSAFMF 335 (445)
T ss_pred HHHHHHHHHHHhCCCCEEeccEEEECCCCCH----HHHHHH--------HHHHHhcCCCEEeeE
Confidence 445556668888888765 444455543 445443 699999999998775
No 111
>PF14443 DBC1: DBC1
Probab=26.79 E-value=79 Score=23.60 Aligned_cols=37 Identities=24% Similarity=0.458 Sum_probs=20.0
Q ss_pred EEEEecC-CCCC---CChhHhHHHHHHHHHHHHHHHHhcCCCeEEe
Q psy13762 122 IILGVGG-FEDQ---KDKEKYLDLVIHTVGVKAAYAKQNGLAGVAM 163 (190)
Q Consensus 122 vllSvGG-w~~~---~~s~~fs~~~i~si~~~~~fl~~~gfDGIDI 163 (190)
=+++||| |+-+ .+...=.+..|+.+ +...+. +-|||+
T Consensus 18 e~~aiGG~WspsLDG~DP~~dp~~LI~TA---iR~~K~--~tgiDL 58 (126)
T PF14443_consen 18 EIMAIGGPWSPSLDGGDPSSDPSVLIRTA---IRTCKA--LTGIDL 58 (126)
T ss_pred eEEecCCcCCcccCCCCCCCCcHHHHHHH---HHHHHH--Hhccch
Confidence 4789999 5432 12222234446666 666654 345554
No 112
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=26.52 E-value=93 Score=26.26 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=13.3
Q ss_pred HHHHHhcCCCeEEeec
Q psy13762 150 AAYAKQNGLAGVAMVD 165 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDW 165 (190)
.+.+++-|||||+|.=
T Consensus 147 A~~a~~aGfDgveih~ 162 (327)
T cd02803 147 ARRAKEAGFDGVEIHG 162 (327)
T ss_pred HHHHHHcCCCEEEEcc
Confidence 4677788999999975
No 113
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=26.43 E-value=79 Score=20.14 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHhccc
Q psy13762 3 AYLCFGVSLLAVLVSCGQA 21 (190)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (190)
+.+.+.+..++.++.|+.-
T Consensus 5 ~~s~~ala~l~sLA~CG~K 23 (58)
T COG5567 5 FKSLLALATLFSLAGCGLK 23 (58)
T ss_pred HHHHHHHHHHHHHHhcccC
Confidence 3455666667777778764
No 114
>PRK14866 hypothetical protein; Provisional
Probab=26.25 E-value=2.2e+02 Score=25.90 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=31.8
Q ss_pred CCceEEEEecCCCCCCChhHhHHHH--------------------HH-HHHHHHHHHHhcCCCeEEeecC
Q psy13762 118 PDLNIILGVGGFEDQKDKEKYLDLV--------------------IH-TVGVKAAYAKQNGLAGVAMVDL 166 (190)
Q Consensus 118 p~lKvllSvGGw~~~~~s~~fs~~~--------------------i~-si~~~~~fl~~~gfDGIDIDWe 166 (190)
.+.+++|+|||.=+ ...|++++ .. .+ .+-+++.+.|.+-|||.
T Consensus 183 ~~~~~~iG~GGgHY---apr~t~i~le~~~~~GHi~pky~l~~l~~~~~i---~~a~~~~~~~~a~iD~K 246 (451)
T PRK14866 183 HTDRPLVGFGGGHY---APRQTRIVLETDWAFGHIAADWQLGALGDPAVL---RAAFEASGADAAYIDRK 246 (451)
T ss_pred cCCCEEEEeCCCCc---chhHHHHhhcCCeeEEeeccccchhccCcHHHH---HHHHHhcCCCEEEEecC
Confidence 36799999999766 56777765 12 34 55666789999999993
No 115
>KOG3035|consensus
Probab=26.21 E-value=2.6e+02 Score=23.17 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=34.7
Q ss_pred hhHHHHHHH-HHHhCCCceEEEEecCCCCC------CC----hhHhH--HHH---HHHHHHHHHHHHhcCCCeEEeec
Q psy13762 104 HELYKQVTA-LKTSYPDLNIILGVGGFEDQ------KD----KEKYL--DLV---IHTVGVKAAYAKQNGLAGVAMVD 165 (190)
Q Consensus 104 ~~~~~~l~~-lk~~np~lKvllSvGGw~~~------~~----s~~fs--~~~---i~si~~~~~fl~~~gfDGIDIDW 165 (190)
.+++++++. ||+..|..+|++==-|--+- .+ ...++ +.+ .+++ +++.++-|+++||+ |
T Consensus 99 ~dNlr~iv~~lks~~~~~riIlitPpp~de~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac---~~la~e~~l~~vdl-w 172 (245)
T KOG3035|consen 99 KDNLRKIVSHLKSLSPETRIILITPPPVDEEAWEKQEQEPYVLGPERTNETVGTYAKAC---ANLAQEIGLYVVDL-W 172 (245)
T ss_pred HHHHHHHHHHhhccCCcceEEEecCCCcCHHHHHHHhccchhccchhhhhHHHHHHHHH---HHHHHHhCCeeeeH-H
Confidence 366777776 77777777776532221110 00 01111 112 6677 99999999999999 5
No 116
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=25.56 E-value=1.6e+02 Score=25.42 Aligned_cols=33 Identities=18% Similarity=-0.051 Sum_probs=21.0
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCCeEEeec-CCCC
Q psy13762 137 KYLDLVIHTVGVKAAYAKQNGLAGVAMVD-LSLD 169 (190)
Q Consensus 137 ~fs~~~i~si~~~~~fl~~~gfDGIDIDW-eyp~ 169 (190)
.|++-+-+-...+.+-+.+.|||.|-+|. +||+
T Consensus 117 P~~~evw~Y~i~IA~Eaa~~GFdEIqfDYIRFP~ 150 (316)
T PF13200_consen 117 PYSKEVWDYNIDIAKEAAKLGFDEIQFDYIRFPD 150 (316)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEeeeeecCC
Confidence 44554423221225556678999999998 4887
No 117
>PRK12677 xylose isomerase; Provisional
Probab=25.53 E-value=96 Score=27.39 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=12.5
Q ss_pred HHHHHhcCCCeEEeecC
Q psy13762 150 AAYAKQNGLAGVAMVDL 166 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDWe 166 (190)
++.+.+.||+||.+..+
T Consensus 37 v~~~a~~Gf~gVElh~~ 53 (384)
T PRK12677 37 VHKLAELGAYGVTFHDD 53 (384)
T ss_pred HHHHHHhCCCEEEeccc
Confidence 67777888888887543
No 118
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.08 E-value=1.9e+02 Score=26.58 Aligned_cols=48 Identities=19% Similarity=0.343 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhCCCce----EEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEee
Q psy13762 105 ELYKQVTALKTSYPDLN----IILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMV 164 (190)
Q Consensus 105 ~~~~~l~~lk~~np~lK----vllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDID 164 (190)
.....+..+++..|++. +++++-|.+. +.|.+. ++|+++.+||-+.+.
T Consensus 348 ~~~~~v~~lr~~~p~i~i~tdiIvGfPgET~----edf~~T--------l~~v~~l~~d~~~~f 399 (509)
T PRK14327 348 SYLELVRKIKEAIPNVALTTDIIVGFPNETD----EQFEET--------LSLYREVGFDHAYTF 399 (509)
T ss_pred HHHHHHHHHHHhCCCcEEeeeEEEeCCCCCH----HHHHHH--------HHHHHHcCCCeEEEe
Confidence 34445556888888887 4566666654 445443 699999999988764
No 119
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.96 E-value=2e+02 Score=25.86 Aligned_cols=54 Identities=13% Similarity=0.246 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhCCCceEE--EEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCC
Q psy13762 105 ELYKQVTALKTSYPDLNII--LGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSL 168 (190)
Q Consensus 105 ~~~~~l~~lk~~np~lKvl--lSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp 168 (190)
...+.+..+++..|++.+. +=+|.-+.+ -+.|.+ . ++|+++.++|.+.+.--.|
T Consensus 291 ~~~~~i~~lr~~~pgi~i~~d~IvG~PgET--~ed~~~-----t---i~~l~~l~~~~v~i~~ysp 346 (459)
T PRK14338 291 RYRELIARIREAIPDVSLTTDIIVGHPGET--EEQFQR-----T---YDLLEEIRFDKVHIAAYSP 346 (459)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEEEECCCCC--HHHHHH-----H---HHHHHHcCCCEeEEEecCC
Confidence 4444566678777887743 224443331 133433 2 6999999999888765444
No 120
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=23.83 E-value=4e+02 Score=21.64 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=33.1
Q ss_pred HHHHHHHHhCCCc---eEEEEecCCCCCCChhHhHHHH--------------------HHHHHHHHHHHHhcCCCeEEee
Q psy13762 108 KQVTALKTSYPDL---NIILGVGGFEDQKDKEKYLDLV--------------------IHTVGVKAAYAKQNGLAGVAMV 164 (190)
Q Consensus 108 ~~l~~lk~~np~l---KvllSvGGw~~~~~s~~fs~~~--------------------i~si~~~~~fl~~~gfDGIDID 164 (190)
+.+..+-...++. +++|+|||-=+ ...|++++ .+-+ .+-+++.+.+-+-||
T Consensus 115 ~avl~~~~~~~~~~~~~~~ig~GG~HY---apr~t~~~l~~~~~~GHi~~ky~l~~l~~~~l---~~a~~~s~~~~a~id 188 (213)
T PF04414_consen 115 RAVLEVLESDEKAECCPVAIGFGGGHY---APRFTKLALETEYAFGHIIPKYALDELDEDVL---RQAIEKSGADVAIID 188 (213)
T ss_dssp HHHHHHHHHTTCSTT-EEEEEE-S-TT----HHHHHHHHHCSEEEEEEE-GGGGGG--HHHH---HHHHCHCT-SEEEEE
T ss_pred HHHHHHhcccccccccceeEEecCccc---chhhhhhhhcCCeEEEeeccCcchhhcCHHHH---HHHHHhCCCcEEEEe
Confidence 3444444443333 99999999877 57788776 2334 666777799999999
Q ss_pred cC
Q psy13762 165 DL 166 (190)
Q Consensus 165 We 166 (190)
|.
T Consensus 189 ~K 190 (213)
T PF04414_consen 189 WK 190 (213)
T ss_dssp TT
T ss_pred cC
Confidence 93
No 121
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=23.72 E-value=4.1e+02 Score=21.75 Aligned_cols=45 Identities=9% Similarity=0.002 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCC
Q psy13762 109 QVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLD 169 (190)
Q Consensus 109 ~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~ 169 (190)
++.++++ +.+++++|||-+- +.|.++ .+.+.+ ++|+|||+=-.|.
T Consensus 60 e~~~~~~---~~~vivnv~~~~~----ee~~~~--------a~~v~~-~~d~IdiN~gCP~ 104 (231)
T TIGR00736 60 QIKKAES---RALVSVNVRFVDL----EEAYDV--------LLTIAE-HADIIEINAHCRQ 104 (231)
T ss_pred HHHHHhh---cCCEEEEEecCCH----HHHHHH--------HHHHhc-CCCEEEEECCCCc
Confidence 4445542 5689999999654 444433 355544 6999999998875
No 122
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=23.50 E-value=1.3e+02 Score=30.56 Aligned_cols=25 Identities=4% Similarity=0.097 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCeEEeec
Q psy13762 138 YLDLVIHTVGVKAAYAKQNGLAGVAMVD 165 (190)
Q Consensus 138 fs~~~i~si~~~~~fl~~~gfDGIDIDW 165 (190)
.++.+++++ .-|+++|++||.-+|=
T Consensus 619 vrk~iiDsl---~yWv~ey~VDGFRfDl 643 (1111)
T TIGR02102 619 SRRILVDSI---KYLVDEFKVDGFRFDM 643 (1111)
T ss_pred HHHHHHHHH---HHHHHhcCCcEEEEec
Confidence 345558899 9999999999999884
No 123
>PRK06934 flavodoxin; Provisional
Probab=23.10 E-value=1.2e+02 Score=24.79 Aligned_cols=15 Identities=7% Similarity=0.443 Sum_probs=11.5
Q ss_pred CCCCCeEEEEEcCCc
Q psy13762 37 NPPPKKILCYYNHEA 51 (190)
Q Consensus 37 ~~~~~~vv~Yy~~w~ 51 (190)
...++..|.||+.+.
T Consensus 33 ~~~~k~Lv~yfs~~~ 47 (221)
T PRK06934 33 RNARRVLIVYFSQPE 47 (221)
T ss_pred ccCCceEEEEEeccC
Confidence 346678999999774
No 124
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=23.08 E-value=3.3e+02 Score=22.53 Aligned_cols=56 Identities=20% Similarity=0.453 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHhCCCceEEEEecCCCCCCChhHhHHHH----HHHHHHHHHHHHhcCCCeEEee
Q psy13762 104 HELYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLV----IHTVGVKAAYAKQNGLAGVAMV 164 (190)
Q Consensus 104 ~~~~~~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~----i~si~~~~~fl~~~gfDGIDID 164 (190)
...+..+..+-+.+|+.+|.| -|.++..++..+-... ++++ .++|.+.|++.--|.
T Consensus 151 ~~~L~~iA~~Lk~~p~~~V~I--~GHTD~~Gs~~~N~~LS~~RA~aV---~~yLv~~GI~~~RI~ 210 (239)
T TIGR03789 151 QPQLDEVATLMKQSPELKLDL--SGYADRRGDSQYNQALSEQRVLEV---RSYLIKQGVDEARLT 210 (239)
T ss_pred HHHHHHHHHHHHhCCCCeEEE--EEeCCCCCChhhHHHHHHHHHHHH---HHHHHHcCCCHHHEE
Confidence 456667777666778887654 6776654333333222 7788 999999998874443
No 125
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=22.86 E-value=2e+02 Score=25.57 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEeecCCCCCCCCCCC--C--------cchHHHHHHhhc
Q psy13762 143 IHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNCG--E--------KYVLVKSAKHHL 189 (190)
Q Consensus 143 i~si~~~~~fl~~~gfDGIDIDWeyp~~~~g~~~--~--------~~~ll~~ir~~l 189 (190)
.+.+ .++++++|+|.|-+|..+.-.-.+... + .+.++++||+.+
T Consensus 172 ~~~i---~~ll~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~ 225 (394)
T PF02065_consen 172 FEVI---DRLLREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARF 225 (394)
T ss_dssp HHHH---HHHHHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH---HHHHHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhC
Confidence 4455 789999999999999976533233322 1 345777887754
No 126
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=22.78 E-value=98 Score=19.56 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=11.6
Q ss_pred HHHHHhcCCCe-EEeecCCC
Q psy13762 150 AAYAKQNGLAG-VAMVDLSL 168 (190)
Q Consensus 150 ~~fl~~~gfDG-IDIDWeyp 168 (190)
++-|++.|+|| |-|-||.+
T Consensus 6 ~~~L~~~GYdG~~siE~ED~ 25 (55)
T PF07582_consen 6 FSALREIGYDGWLSIEHEDA 25 (55)
T ss_dssp HHHHHHTT--SEEEE---ST
T ss_pred HHHHHHcCCCceEEEEeecC
Confidence 78899999999 67888764
No 127
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=22.57 E-value=70 Score=19.39 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=9.1
Q ss_pred ChhHHHHHHHHHHHHHHhccc
Q psy13762 1 MRAYLCFGVSLLAVLVSCGQA 21 (190)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (190)
||......+.++.+++++-|+
T Consensus 1 MkKi~~~~i~~~~~~L~aCQa 21 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQA 21 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhh
Confidence 554444444444444443343
No 128
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=22.55 E-value=1.4e+02 Score=23.69 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=17.5
Q ss_pred ChhHHHHHHHHHHHHHHhccccc
Q psy13762 1 MRAYLCFGVSLLAVLVSCGQAAT 23 (190)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (190)
|++.+.+.+.++.++.+++.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (247)
T PRK09495 1 MKSVLKVSLAALTLAFAVSSHAA 23 (247)
T ss_pred CcHHHHHHHHHHHHHHHhHhhcc
Confidence 78888888888888887765443
No 129
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=22.51 E-value=2.4e+02 Score=24.28 Aligned_cols=45 Identities=16% Similarity=0.302 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHhCCCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEee
Q psy13762 105 ELYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMV 164 (190)
Q Consensus 105 ~~~~~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDID 164 (190)
..+..+..+|+..|+ ..+++=|+-.. .+.+ .+.++..|.|||.|-
T Consensus 184 ad~~~I~~vk~~~~~-ipvi~NGdI~s-----------~~~a---~~~l~~tg~DgVMig 228 (323)
T COG0042 184 ADWDYIKELKEAVPS-IPVIANGDIKS-----------LEDA---KEMLEYTGADGVMIG 228 (323)
T ss_pred cCHHHHHHHHHhCCC-CeEEeCCCcCC-----------HHHH---HHHHHhhCCCEEEEc
Confidence 467788889988766 33344444222 3455 788889999999983
No 130
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=22.08 E-value=98 Score=27.21 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=13.1
Q ss_pred HHHHHhcCCCeEEeec
Q psy13762 150 AAYAKQNGLAGVAMVD 165 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDW 165 (190)
....++=|||||.|.=
T Consensus 155 A~rA~~AGFDgVEIH~ 170 (363)
T COG1902 155 ARRAKEAGFDGVEIHG 170 (363)
T ss_pred HHHHHHcCCCEEEEee
Confidence 4677788999999875
No 131
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=21.74 E-value=1.1e+02 Score=28.60 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCeEEeecCCC----CCCCCCCC-----CcchHHHHHHhhc
Q psy13762 138 YLDLVIHTVGVKAAYAKQNGLAGVAMVDLSL----DDFKGNCG-----EKYVLVKSAKHHL 189 (190)
Q Consensus 138 fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp----~~~~g~~~-----~~~~ll~~ir~~l 189 (190)
|..-.++.. .+-++..||||+.||=--. -++.|... .+-.||+++|+++
T Consensus 242 WQ~yI~~q~---~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~ 299 (559)
T PF13199_consen 242 WQNYIINQM---NKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEAL 299 (559)
T ss_dssp HHHHHHHHH---HHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHH---HHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhC
Confidence 334447777 7888999999999985211 02233322 1236999999987
No 132
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=21.56 E-value=2.8e+02 Score=18.98 Aligned_cols=53 Identities=15% Similarity=0.357 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHhCCCceEEEEecCCCCCCChhHhHHHH----HHHHHHHHHHHHhcCCCeE
Q psy13762 104 HELYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLV----IHTVGVKAAYAKQNGLAGV 161 (190)
Q Consensus 104 ~~~~~~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~----i~si~~~~~fl~~~gfDGI 161 (190)
...+.++..+-+.+|+.+| .|-|.++..++..+.... ++++ .++|.++|++.-
T Consensus 16 ~~~L~~~a~~l~~~~~~~i--~I~Ghtd~~g~~~~N~~LS~~RA~~V---~~~L~~~gi~~~ 72 (104)
T TIGR02802 16 QAILDAHAAYLKKNPSVRV--TIEGHTDERGTREYNLALGERRANAV---KDYLQAKGVSAS 72 (104)
T ss_pred HHHHHHHHHHHHHCCCcEE--EEEEecCCCCCHHHHHHHHHHHHHHH---HHHHHHcCCCHH
Confidence 4566777775567788765 466766543333333222 7777 999999887653
No 133
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.13 E-value=2.8e+02 Score=24.93 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhCCCceEE--EEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecC
Q psy13762 105 ELYKQVTALKTSYPDLNII--LGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDL 166 (190)
Q Consensus 105 ~~~~~l~~lk~~np~lKvl--lSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWe 166 (190)
.....+..+++..|++.+. +=+|--+.. .+.|.+. ++|+++.+||.+-+.--
T Consensus 294 ~~~~~v~~ir~~~pgi~i~~d~IvGfPgET--~edf~~T--------l~~i~~l~~~~~~~~~~ 347 (455)
T PRK14335 294 HYLSLVGKLKASIPNVALSTDILIGFPGET--EEDFEQT--------LDLMREVEFDSAFMYHY 347 (455)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEEEeCCCCC--HHHHHHH--------HHHHHhcCCCeEEEEEe
Confidence 4445556688877887654 334533331 2445443 79999999999887653
No 134
>PRK09810 entericidin A; Provisional
Probab=21.07 E-value=1.1e+02 Score=18.22 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=12.9
Q ss_pred ChhHHHHHHHHHHHHHHhcccc
Q psy13762 1 MRAYLCFGVSLLAVLVSCGQAA 22 (190)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (190)
||....+.+.+++++.+|....
T Consensus 2 Mkk~~~l~~~~~~~L~aCNTv~ 23 (41)
T PRK09810 2 MKRLIVLVLLASTLLTGCNTAR 23 (41)
T ss_pred hHHHHHHHHHHHHHHhhhhhcc
Confidence 5555555555555677786543
No 135
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=21.04 E-value=71 Score=25.38 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=20.6
Q ss_pred CCCeEEeecCCCCCCCCCC-CCcchHHHHHHhhc
Q psy13762 157 GLAGVAMVDLSLDDFKGNC-GEKYVLVKSAKHHL 189 (190)
Q Consensus 157 gfDGIDIDWeyp~~~~g~~-~~~~~ll~~ir~~l 189 (190)
...||.||...+ ... ..+..+|++||+.|
T Consensus 42 ~v~giQIDfDa~----t~~L~~Y~~fL~~LR~~L 71 (181)
T PF11340_consen 42 NVAGIQIDFDAA----TSRLPAYAQFLQQLRQRL 71 (181)
T ss_pred CceEEEEecCcc----ccchHHHHHHHHHHHHhC
Confidence 578999999332 221 34668999999986
No 136
>PF10836 DUF2574: Protein of unknown function (DUF2574) ; InterPro: IPR020386 This entry contains proteins with no known function.
Probab=20.84 E-value=41 Score=23.48 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=20.8
Q ss_pred ChhHHHHHHHHHHHHHHhcccccccc
Q psy13762 1 MRAYLCFGVSLLAVLVSCGQAATKSK 26 (190)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (190)
||.++.+++..++--.+.+.-+++.+
T Consensus 1 Mkk~ll~Gii~laYGls~P~faSdTA 26 (93)
T PF10836_consen 1 MKKYLLMGIIVLAYGLSSPAFASDTA 26 (93)
T ss_pred CCchhhhhhhHhhhhcccccccccce
Confidence 88999999999998888776555443
No 137
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=20.80 E-value=2.7e+02 Score=20.71 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=24.1
Q ss_pred HHHHHH-HHHhCCCceEEEEecCCCCCCChhHhHHHHHHHH
Q psy13762 107 YKQVTA-LKTSYPDLNIILGVGGFEDQKDKEKYLDLVIHTV 146 (190)
Q Consensus 107 ~~~l~~-lk~~np~lKvllSvGGw~~~~~s~~fs~~~i~si 146 (190)
++.+.. +...+|.--+.||+=||++.+ -...+++.++++
T Consensus 38 ~~ai~~~l~~~~p~KpLVlSfHG~tGtG-Kn~v~~liA~~l 77 (127)
T PF06309_consen 38 VNAIKGHLANPNPRKPLVLSFHGWTGTG-KNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHcCCCCCCCEEEEeecCCCCc-HHHHHHHHHHHH
Confidence 334443 555678888999999998842 222345545554
No 138
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=20.71 E-value=1.4e+02 Score=28.84 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=13.4
Q ss_pred HHHHHhcCCCeEEeecC
Q psy13762 150 AAYAKQNGLAGVAMVDL 166 (190)
Q Consensus 150 ~~fl~~~gfDGIDIDWe 166 (190)
.+.+++-|||||+|.=-
T Consensus 557 A~~a~~aGfDgveih~a 573 (765)
T PRK08255 557 ARRAAEAGFDWLELHCA 573 (765)
T ss_pred HHHHHHcCCCEEEEecc
Confidence 45677789999999754
No 139
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.51 E-value=3.9e+02 Score=21.98 Aligned_cols=67 Identities=9% Similarity=0.123 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCCCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEee---cCCCCCCCCCCCCcchHH
Q psy13762 106 LYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMV---DLSLDDFKGNCGEKYVLV 182 (190)
Q Consensus 106 ~~~~l~~lk~~np~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDID---Weyp~~~~g~~~~~~~ll 182 (190)
++.-|..+.+. +..|+||-|+.+. . + ++.+ ++++++.+-+-+-|= -.||.... . -+...|
T Consensus 102 n~~lL~~~A~t--gkPvIlSTG~stl---~----E--I~~A---v~~~~~~~~~~l~llHC~s~YP~~~e-~--~NL~~i 164 (241)
T PF03102_consen 102 NLPLLEYIAKT--GKPVILSTGMSTL---E----E--IERA---VEVLREAGNEDLVLLHCVSSYPTPPE-D--VNLRVI 164 (241)
T ss_dssp -HHHHHHHHTT---S-EEEE-TT--H---H----H--HHHH---HHHHHHHCT--EEEEEE-SSSS--GG-G----TTHH
T ss_pred CHHHHHHHHHh--CCcEEEECCCCCH---H----H--HHHH---HHHHHhcCCCCEEEEecCCCCCCChH-H--cChHHH
Confidence 34444455554 7889999999755 1 2 5666 888877776666553 35654321 1 134577
Q ss_pred HHHHhhc
Q psy13762 183 KSAKHHL 189 (190)
Q Consensus 183 ~~ir~~l 189 (190)
.+||+.+
T Consensus 165 ~~L~~~f 171 (241)
T PF03102_consen 165 PTLKERF 171 (241)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 8887764
No 140
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=20.47 E-value=1.3e+02 Score=25.62 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=24.6
Q ss_pred HHHhCCCceEEEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCCCC
Q psy13762 113 LKTSYPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLD 169 (190)
Q Consensus 113 lk~~np~lKvllSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWeyp~ 169 (190)
+.......++.+=|+|-+- ..+. +. ++.+..+++|||||+==-|.
T Consensus 47 ~~~~~~~~p~~~Ql~g~~~----~~~~----~a----a~~~~~~~~~~IDlN~GCP~ 91 (309)
T PF01207_consen 47 LPFLPNERPLIVQLFGNDP----EDLA----EA----AEIVAELGFDGIDLNMGCPA 91 (309)
T ss_dssp S-GCC-T-TEEEEEE-S-H----HHHH----HH----HHHHCCTT-SEEEEEE---S
T ss_pred ccccccccceeEEEeeccH----HHHH----HH----HHhhhccCCcEEeccCCCCH
Confidence 3333334689999999532 2232 23 47788899999999997664
No 141
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.37 E-value=2.3e+02 Score=25.20 Aligned_cols=51 Identities=22% Similarity=0.359 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhCCCceE----EEEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeecCC
Q psy13762 105 ELYKQVTALKTSYPDLNI----ILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLS 167 (190)
Q Consensus 105 ~~~~~l~~lk~~np~lKv----llSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDWey 167 (190)
...+.+..+++..|++.+ ++++-|.+. +.|.++ ++|+++.++|.+.+.=-.
T Consensus 260 ~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~----edf~~t--------l~fi~~~~~~~~~v~~ys 314 (418)
T PRK14336 260 QYRELVERLKTAMPDISLQTDLIVGFPSETE----EQFNQS--------YKLMADIGYDAIHVAAYS 314 (418)
T ss_pred HHHHHHHHHHhhCCCCEEEEEEEEECCCCCH----HHHHHH--------HHHHHhcCCCEEEeeecC
Confidence 444455567887788865 444445433 444433 699999999998775433
No 142
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.31 E-value=2.1e+02 Score=25.41 Aligned_cols=51 Identities=14% Similarity=0.298 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhCCCceEE--EEecCCCCCCChhHhHHHHHHHHHHHHHHHHhcCCCeEEeec
Q psy13762 105 ELYKQVTALKTSYPDLNII--LGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVD 165 (190)
Q Consensus 105 ~~~~~l~~lk~~np~lKvl--lSvGGw~~~~~s~~fs~~~i~si~~~~~fl~~~gfDGIDIDW 165 (190)
...+.+..+++..|++.+. +=+|.-+.. .+.|.+. ++|+++.+||.+-+.=
T Consensus 276 ~~~~~i~~lr~~~~~i~i~~d~IvGfPgET--~edf~~t--------l~fi~~~~~~~~~~~~ 328 (434)
T PRK14330 276 EYLELIEKIRSKVPDASISSDIIVGFPTET--EEDFMET--------VDLVEKAQFERLNLAI 328 (434)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEEEECCCCC--HHHHHHH--------HHHHHhcCCCEEeeee
Confidence 3444555678777876633 223433331 2344433 6999999999887654
Done!