RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13762
(190 letters)
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep
heparin, hormone-growth factor complex; HET: NAG BMA
MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5
d.26.3.1 PDB: 1jne_A*
Length = 420
Score = 97.6 bits (243), Expect = 2e-24
Identities = 40/103 (38%), Positives = 60/103 (58%), Gaps = 6/103 (5%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
++CYY+ +Y REG GK+ +L AL C+HLVY YAG+ + S+++ LD K+
Sbjct: 3 NLVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKH 62
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGG--FEDQKDKEKYLDLV 142
+ +VT+LK YP L ++L VGG D KY+DL+
Sbjct: 63 ----QFSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLL 101
Score = 59.0 bits (143), Expect = 7e-11
Identities = 22/46 (47%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 145 TVGVKAAYAKQNGLAGVAMVDLSLDDFKGNC-GEKYVLVKSAKHHL 189
+ KAAYA+ L GVA+ DLS DDF+G C G+KY ++++ K+ L
Sbjct: 375 SASNKAAYARVKNLGGVALFDLSYDDFRGQCSGDKYPILRAIKYRL 420
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin,
chitooligosaccharide, pseudochitinase, HY; HET: NAG;
1.95A {Homo sapiens}
Length = 365
Score = 75.8 bits (187), Expect = 1e-16
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 41 KKILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDK 100
K++CY+ + + R+ GK E + P L C+HL+Y++A I N+ IK
Sbjct: 2 YKLVCYFTNWSQDRQEPGKFTPENIDPFL--CSHLIYSFASIENNKVIIKDKS------- 52
Query: 101 NKGHELYKQVTALKTSYPDLNIILGVGG 128
LY+ + +LKT P L I+L +GG
Sbjct: 53 --EVMLYQTINSLKTKNPKLKILLSIGG 78
Score = 56.5 bits (137), Expect = 5e-10
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 13/64 (20%)
Query: 128 GFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNC--GEKYVLVKSA 185
G++D K ++ K + K L G + + +DDF G Y LV++
Sbjct: 310 GYDDVK-----------SMETKVQFLKNLNLGGAMIWSIDMDDFTGKSCNQGPYPLVQAV 358
Query: 186 KHHL 189
K L
Sbjct: 359 KRSL 362
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 75.5 bits (186), Expect = 1e-16
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
K++CY+ + A R+G+ + ++L P+L CTHL+YA+AG++N + D+
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSL--CTHLIYAFAGMTNHQLSTTEWN-----DET 54
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLV 142
LY++ LK P L +L +GG+ +K+ D+V
Sbjct: 55 ----LYQEFNGLKKMNPKLKTLLAIGGWNF--GTQKFTDMV 89
Score = 53.2 bits (128), Expect = 8e-09
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 13/65 (20%)
Query: 128 GFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKG-NCGE-KYVLVKSA 185
GF+D + + K +Y KQ GL G + L LDDF G +C + +Y L+++
Sbjct: 312 GFDDVE-----------SFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTL 360
Query: 186 KHHLK 190
+ L
Sbjct: 361 RQELS 365
>2pi6_A Chitinase-3-like protein 1; complex, signaling protein; HET: NAG
MAN; 1.65A {Ovis aries} SCOP: c.1.8.5 d.26.3.1 PDB:
2dpe_A* 1sr0_A* 1zl1_A* 1zbk_A* 2dsu_A* 2dsv_A* 2dsw_A*
2fdm_A* 2g41_A* 2g8z_A* 2dt1_A* 1zbv_A* 1zu8_A* 2aos_A*
2b31_A* 1zbw_A* 2dt0_A* 2dsz_A* 2dt2_A* 2dt3_A* ...
Length = 361
Score = 75.0 bits (185), Expect = 2e-16
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
K++CYY + REG G + + P L CTH++Y +A ISN+ E+DT +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFL--CTHVIYTFANISNN---------EIDTWEW 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGG 128
LY + LK P L +L VGG
Sbjct: 51 NDVTLYDTLNTLKNRNPKLKTLLSVGG 77
Score = 56.1 bits (136), Expect = 8e-10
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 145 TVGVKAAYAKQNGLAGVAMVDLSLDDFKGNC---GEKYVLVKSAKHHLK 190
+V KA Y K LAG + L LDDF+G + L + K L
Sbjct: 311 SVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQNLTFPLTSAVKDVLA 359
>1vf8_A YM1, secretory protein; chitinase, CHI-lectin, structural
plasticity, functional versatility, immune system; 1.31A
{Mus musculus} SCOP: c.1.8.5 d.26.3.1 PDB: 1e9l_A
Length = 377
Score = 73.5 bits (181), Expect = 7e-16
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 13/101 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
+++CYY A R +G + P L CTHL+YA+AG+ N+ E+
Sbjct: 2 QLMCYYTSWAKDRPIEGSFKPGNIDPCL--CTHLIYAFAGMQNN---------EITYTHE 50
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGGFEDQKDKEKYLDLV 142
+ Y+ + LK +L +L +GG++ + +V
Sbjct: 51 QDLRDYEALNGLKDKNTELKTLLAIGGWKF--GPAPFSAMV 89
Score = 54.3 bits (131), Expect = 3e-09
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 13/65 (20%)
Query: 128 GFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNC--GEKYVLVKSA 185
G+++ + + +KA + K N L G + L +DDF G+ + L +
Sbjct: 314 GYDNVR-----------SFKLKAQWLKDNNLGGAVVWPLDMDDFSGSFCHQRHFPLTSTL 362
Query: 186 KHHLK 190
K L
Sbjct: 363 KGDLN 367
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure,
crystallography, asthma,inhibitor, chitin degradation,
methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo
sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A*
2ybt_A* 2ybu_A*
Length = 395
Score = 71.7 bits (176), Expect = 3e-15
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 42 KILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
++ CY+ + A R G G+ +++ P L CTHL+YA+AG+ N++ +
Sbjct: 2 QLTCYFTNWAQYRPGLGRFMPDDINPCL--CTHLIYAFAGMQNNEITTIEWNDV------ 53
Query: 102 KGHELYKQVTALKTSYPDLNIILGVGG 128
LY+ LK L +L +GG
Sbjct: 54 ---TLYQAFNGLKNKNSQLKTLLAIGG 77
Score = 50.5 bits (121), Expect = 5e-08
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
Query: 128 GFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGN-CGE-KYVLVKSA 185
G+++ K + +KA + K N G + + LDDF G C + K+ L+ +
Sbjct: 314 GYDNVK-----------SFDIKAQWLKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTL 362
Query: 186 KHHL 189
K L
Sbjct: 363 KKAL 366
>1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase,
hydrolase; 1.7A {Aspergillus fumigatus} SCOP: c.1.8.5
d.26.3.1 PDB: 1w9u_A* 1w9v_A* 2a3a_A* 2a3b_A* 2a3c_A*
2a3e_A* 2iuz_A* 3ch9_A 3chc_A* 3chd_A* 3che_A* 3chf_A*
1wno_A*
Length = 433
Score = 70.1 bits (172), Expect = 1e-14
Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 20/142 (14%)
Query: 1 MRAYLCFGVSLLAVLVSCGQAATKSKVKYIPINLEDNPPP--KKILCYY-NHEAYKREGK 57
MR V + +L S A + + + + Y+ N Y R
Sbjct: 1 MRFATSTIVKVALLLSSLCVDAAVMWNRDTSSTDLEARASSGYRSVVYFVNWAIYGR--- 57
Query: 58 GKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDK-----------NKGHEL 106
++L TH++YA+A + + D D +K N +
Sbjct: 58 -NHNPQDLPVER--LTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGC 114
Query: 107 YKQVTALKTSYPDLNIILGVGG 128
KQ+ LK +L ++L +GG
Sbjct: 115 IKQLYLLKKQNRNLKVLLSIGG 136
Score = 37.3 bits (87), Expect = 0.002
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 145 TVGVKAAYAKQNGLAGVAMV-DLSLDDFKGNCGEKYVLVKSAKHHL 189
+K+ Y K GL G AM D S D L+ + + L
Sbjct: 365 VANLKSGYIKSLGLGG-AMWWDSSSDKTG-----SDSLITTVVNAL 404
>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A
{Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1
PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A*
1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A*
1ogb_A 1ogg_A* 1e6z_A* 1ur9_A*
Length = 499
Score = 65.7 bits (160), Expect = 5e-13
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 41 KKILCYY--------NHEAYKREGKGKVATEELRPALTT-CTHLVYAYAGISNSDYHIKS 91
K ++ YY N+ + PA TH+ +++ I+++ +
Sbjct: 5 KAVIGYYFIPTNQINNYTET-DTSVVPFPVSNITPAKAKQLTHINFSFLDINSN--LECA 61
Query: 92 LDKELDTDKNKGHELYKQVTALKTSYPDLNIILGVGG 128
D + K + ++TALK P L I+ +GG
Sbjct: 62 WDPATNDAKARDV--VNRLTALKAHNPSLRIMFSIGG 96
Score = 40.3 bits (94), Expect = 2e-04
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 145 TVGVKAAYAKQNGLAGVAMV-DLSLDDFKG 173
+ KA Y KQ L G M L D+ G
Sbjct: 384 SFKYKAKYIKQQQLGG-VMFWHLGQDNRNG 412
>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, glycosyl hydrolases
family 18; 2.60A {Klebsiella pneumoniae subsp}
Length = 420
Score = 63.6 bits (155), Expect = 2e-12
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 25/126 (19%)
Query: 9 VSLLAVLVSCGQAATKSKVKYIPINLEDNPPPKKILCYYNHEAYKREGKGKVATEELRPA 68
++ L +L + +A P + Y+N G G ++L
Sbjct: 10 LAALPLLCASALSAQ----------------PLMSVGYFNGGGDVTAGPGGDI-DKLDVR 52
Query: 69 LTTCTHLVYAYAGISNSDYHI-----KSLDKELDT-DKNKGHELYKQVTALKTSYPDLNI 122
THL Y++ I N + K + K +++ AL+ PDL +
Sbjct: 53 Q--ITHLNYSFGLIYNDEKDETNAALKDPAHLHEIWLSPKVQADLQKLPALRKQNPDLKV 110
Query: 123 ILGVGG 128
+L VGG
Sbjct: 111 LLSVGG 116
Score = 39.4 bits (92), Expect = 3e-04
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 145 TVGVKAAYAKQNGLAGVAMV-DLSLDDFKGNCG 176
+V +KA Y K GLAG AM + DD
Sbjct: 379 SVAIKADYIKAKGLAG-AMFWEYGADDQNQLAR 410
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas
hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria
ochroleuca} PDB: 3g6l_A*
Length = 406
Score = 60.8 bits (148), Expect = 2e-11
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 19/119 (15%)
Query: 22 ATKSKVKYIPINLEDNPPPKKILCYY-NHEAYKREGKGKVATEELRPALTTCTHLVYAYA 80
AT +L Y+ N Y R +L+ + H++Y++
Sbjct: 2 ATPRMEDLASTDLSTRATGSINAVYFTNWGIYGR----NFQPADLQASK--ILHVLYSFM 55
Query: 81 GISNSDYHIKSLDKELDTDK-----------NKGHELYKQVTALKTSYPDLNIILGVGG 128
+ D + S D D +K + KQ+ LK + L I+L +GG
Sbjct: 56 NL-RVDGTVYSGDTYADLEKHYSDDSWNDIGTNAYGCVKQLYKLKKANRSLKIMLSIGG 113
Score = 38.1 bits (89), Expect = 0.001
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 145 TVGVKAAYAKQNGLAGVAMV-DLSLDDFKGNCGEKYVLVKSAKHHL 189
V K +YAK GL G +M + S D L+ +A +
Sbjct: 342 MVRTKVSYAKGLGLGG-SMFWEASADKTGS-----DSLIGTALSSM 381
>3alf_A Chitinase, class V; hydrolase; 1.20A {Nicotiana tabacum} PDB:
3alg_A*
Length = 353
Score = 60.4 bits (147), Expect = 2e-11
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 54 REGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVTAL 113
+A + L THL A+A ++ + + D+ + + +
Sbjct: 9 WFKDSGLALNNIDSTL--FTHLFCAFADLNPQLNQLIISPENQDS-------FRQFTSTV 59
Query: 114 KTSYPDLNIILGVGG 128
+ P + L + G
Sbjct: 60 QRKNPSVKTFLSIAG 74
Score = 49.6 bits (119), Expect = 1e-07
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 145 TVGVKAAYAKQNGLAGVAMV-DLSLDDFKGNCGEKYVLVKSAKHHLK 190
TV K Y K GL G ++ D G + +K
Sbjct: 308 TVRNKVNYVKGRGLLG-YFAWHVAGDQNWGLSRTASQTWGVSFQEMK 353
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides
immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A*
1ll6_A
Length = 392
Score = 59.6 bits (145), Expect = 4e-11
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 19/100 (19%)
Query: 41 KKILCYY-NHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTD 99
+ + Y+ N Y R ++L+ TH++YA+A I + D DTD
Sbjct: 3 FRSVVYFVNWAIYGR----GHNPQDLKADQ--FTHILYAFANI-RPSGEVYLSDTWADTD 55
Query: 100 K-----------NKGHELYKQVTALKTSYPDLNIILGVGG 128
K N + KQ+ LK + +L +L +GG
Sbjct: 56 KHYPGDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGG 95
Score = 39.6 bits (93), Expect = 3e-04
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 145 TVGVKAAYAKQNGLAGVAMV-DLSLDDFKGNCGEKYVLVKSAKHHL 189
G KA Y +NG+ G M + S D LV + + L
Sbjct: 324 IAGKKAEYITKNGMGG-GMWWESSSDKTGN-----ESLVGTVVNGL 363
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 57.6 bits (139), Expect = 3e-10
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 9/93 (9%)
Query: 36 DNPPPKKILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKE 95
+ ++ + + KGK + A+ + + D +
Sbjct: 163 NASIAVRLGVATDPDDAIANHKGKTIPVDPDGAV--LASINCGFTKWEAGDANE------ 214
Query: 96 LDTDKNKGHELYKQVTALKTSYPDLNIILGVGG 128
++ K L L + +L L +GG
Sbjct: 215 -RYNQEKAKGLLGGFRLLHEADKELEFSLSIGG 246
Score = 39.5 bits (92), Expect = 3e-04
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 145 TVGVKAAYAKQNGLAGVAMV-DLSLDDFKGNCGEKYVLVKSAKHHL 189
+V K Y K GL G + D+ L + K+ +
Sbjct: 499 SVRDKGRYVKDKGLGG-LFIWSGDQDNGILTNAAHEGLKRRIKNKV 543
>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET:
FLC; 2.01A {Arabidopsis thaliana}
Length = 356
Score = 56.9 bits (138), Expect = 3e-10
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 54 REGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVTAL 113
+ ++ +L THL A+A +++ + + +
Sbjct: 10 WFPASEFPVTDIDSSL--FTHLFCAFADLNSQTNQVTVSSANQP-------KFSTFTQTV 60
Query: 114 KTSYPDLNIILGVGG 128
+ P + +L +GG
Sbjct: 61 QRRNPSVKTLLSIGG 75
Score = 45.4 bits (108), Expect = 3e-06
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 145 TVGVKAAYAKQNGLAGVAMV-DLSLDDFKGNC---GEKYVLVKSAKHHLK 190
++ K YAKQ GL G + DD G + + + ++
Sbjct: 306 SIVTKVRYAKQRGLLG-YFSWHVGADDNSGLSRAASQAWDATTATTRTIQ 354
>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP:
c.1.8.5 d.26.3.1
Length = 435
Score = 57.1 bits (138), Expect = 4e-10
Identities = 19/127 (14%), Positives = 35/127 (27%), Gaps = 34/127 (26%)
Query: 34 LEDNPPPKKILCYY-NHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNS------- 85
L + + Y+ Y R + K TH+ Y++ I+N
Sbjct: 2 LTSTVNGYRNVGYFAQWGVYGRAFQAKQLDVSGTAKN--LTHINYSFGNINNQTLTCFMA 59
Query: 86 --------DYHIKSLDKELDTDKN----------------KGHELYKQVTALKTSYPDLN 121
+ + D D + Q+ LK P L
Sbjct: 60 NKAQGTGPNGSDGAGDAWADFGMGYAADKSVSGKADTWDQPLAGSFNQLKQLKAKNPKLK 119
Query: 122 IILGVGG 128
+++ +GG
Sbjct: 120 VMISLGG 126
Score = 37.8 bits (88), Expect = 0.001
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 145 TVGVKAAYAKQNGLAGVAMV-DLSLDDFKGNCG 176
T K Y GL G M +LS D G
Sbjct: 384 TTKQKTDYIVSKGLGG-GMWWELSGDRNGELVG 415
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM
barrel, chitin binding, glyco hydrolase, hydrolase;
2.10A {Crocus vernus}
Length = 275
Score = 56.0 bits (135), Expect = 6e-10
Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 70 TTCT-HLVYAYAGISNSDYHIKSLDKELDTDKNKGHELYKQVTALKTSYPDLNIILGVGG 128
V ++A + S + + + + Q++A+K+S+P++ + + +GG
Sbjct: 25 HITKFQFVLSFAVDYTASSPHTSTNGKFNVFWDSSILGPDQISAIKSSHPNVRVAVSLGG 84
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron}
PDB: 3co4_A
Length = 312
Score = 50.8 bits (122), Expect = 4e-08
Identities = 8/90 (8%), Positives = 27/90 (30%), Gaps = 17/90 (18%)
Query: 39 PPKKILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDT 98
K ++ Y + ++ E + TH+ ++A + +D +
Sbjct: 2 SLKVVIGYLALDDWEFES----LFPTIEWKY--LTHINASFARV-KADGTLNINPVRKRI 54
Query: 99 DKNKGHELYKQVTALKTSYPDLNIILGVGG 128
+ + ++ I++ +
Sbjct: 55 ESVR----------ETAHKHNVKILISLAK 74
Score = 44.2 bits (105), Expect = 7e-06
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 145 TVGVKAAYAKQNGLAGVAMV-DLSLDDFKGNCGEKYVLVKSAKHHLK 190
T+ K + K+N AG M+ L D N L+ +
Sbjct: 260 TIANKCKFIKENDYAG-VMIWQLFQDAHNDNY--DLKLINVVGREMM 303
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 50.6 bits (121), Expect = 6e-08
Identities = 22/127 (17%), Positives = 37/127 (29%), Gaps = 41/127 (32%)
Query: 37 NPPPKKILCYY-NHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISN----------- 84
K + Y+ Y R +++ THL+Y + I
Sbjct: 131 QNSGKVVGSYFVEWGVYGR----NFTVDKIPAQN--LTHLLYGFIPICGGNGINDSLKEI 184
Query: 85 --------------SDYHIKSLDKELDTDKN---------KGHELYKQVTALKTSYPDLN 121
D+ + D K + Q+ ALK ++PDL
Sbjct: 185 EGSFQALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQLMALKQAHPDLK 244
Query: 122 IILGVGG 128
I+ +GG
Sbjct: 245 ILPSIGG 251
Score = 37.1 bits (86), Expect = 0.002
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 145 TVGVKAAYAKQNGLAGVAMV-DLSLDDF 171
+V K Y L G ++ D+
Sbjct: 497 SVQAKGKYVLDKQLGG-LFSWEIDADNG 523
>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A
{Bacillus circulans} SCOP: c.1.8.5 d.26.3.1
Length = 419
Score = 47.8 bits (114), Expect = 6e-07
Identities = 28/127 (22%), Positives = 41/127 (32%), Gaps = 44/127 (34%)
Query: 40 PKKILCYY-NHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISN-------------- 84
KI+ YY + AY R ++ P TH+ YA+A I
Sbjct: 11 SYKIVGYYPSWAAYGR----NYNVADIDPTK--VTHINYAFADICWNGIHGNPDPSGPNP 64
Query: 85 ---------------SDYHIKSLDKELDTDKNKGHE--------LYKQVTALKTSYPDLN 121
+ I D +DT K + Q+ LK + P+L
Sbjct: 65 VTWTCQNEKSQTINVPNGTIVLGDPWIDTGKTFAGDTWDQPIAGNINQLNKLKQTNPNLK 124
Query: 122 IILGVGG 128
I+ VGG
Sbjct: 125 TIISVGG 131
Score = 39.3 bits (92), Expect = 4e-04
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 145 TVGVKAAYAKQNGLAGVAMV-DLSLDDFKGNCG 176
+VG K AY K GL G AM +LS D K
Sbjct: 382 SVGYKTAYIKSKGLGG-AMFWELSGDRNKTLQN 413
>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A
{Aspergillus fumigatus}
Length = 290
Score = 45.3 bits (107), Expect = 3e-06
Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 24/160 (15%)
Query: 37 NPPPKKILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKEL 96
P ++++CY+ R V TH++ A ++ HI D
Sbjct: 9 RPEHRRVICYHQTLCPNRGDYVSVLPLVKNNTG--VTHIIIAAFHLNEDPGHITLND--D 64
Query: 97 DTDKNKGHELYKQVTALKTSYPDLNIILGVGG---------FEDQKDKEKYLDLVIHTV- 146
D + L+ +V LK S + ++ +GG DQ+ E+Y ++ V
Sbjct: 65 PPDHEMYNPLWAEVPVLKRS--GVKVMGMLGGAAQGSYRCLDGDQEKFERYYQPLLAMVR 122
Query: 147 -----GVKAAYAKQNGLAGVAMVDLSLDDFKGNCGEKYVL 181
G+ ++ L G+ + +D K + G+ +++
Sbjct: 123 RHQLDGLDLDVEEEMSLPGIIRL---IDRLKLDLGDDFII 159
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase,
hydro hydrolase inhibitor complex; HET: POY; 1.16A
{Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A*
3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A*
3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A*
3as3_A*
Length = 584
Score = 44.1 bits (104), Expect = 9e-06
Identities = 25/129 (19%), Positives = 39/129 (30%), Gaps = 44/129 (34%)
Query: 36 DNPPPKKILCYY-NHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISN---------- 84
+ P + Y+ Y R + + TH++Y + I
Sbjct: 133 NTDPSIVMGTYFVEWGIYGR----DYTVDNMPVDN--LTHILYGFIPICGPNESVKSVGG 186
Query: 85 -------------SDYHIKSLDKELDTDKN------------KGHELYKQVTALKTSYPD 119
+DY + D K+ KG+ Y + ALK PD
Sbjct: 187 NSFNALQTACRGVNDYEVVIHDPWAAYQKSFPQAGHEYSTPIKGN--YAMLMALKQRNPD 244
Query: 120 LNIILGVGG 128
L II +GG
Sbjct: 245 LKIIPSIGG 253
Score = 36.4 bits (84), Expect = 0.004
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 145 TVGVKAAYAKQNGLAGVAMV-DLSLDDF 171
+V K YAK GLAG ++ D+
Sbjct: 530 SVLAKGNYAKSLGLAG-LFSWEIDADNG 556
>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} SCOP:
c.1.8.5
Length = 290
Score = 43.5 bits (102), Expect = 1e-05
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 40 PKKILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTD 99
PK I Y TE + T H + +A S Y +
Sbjct: 1 PKPIFREYIGVKPNSTTLHDFPTEIINTE-TLEFHYILGFA--IESYYESGKGTGTFEES 57
Query: 100 KNKGHELYKQVTALKTSYPDLNIILGVGG 128
+ ++V LK +P++ +++ +GG
Sbjct: 58 WDVELFGPEKVKNLKRRHPEVKVVISIGG 86
>1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase
(glucosidase); 1.90A {Streptomyces plicatus} SCOP:
c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A
1c93_A
Length = 271
Score = 42.7 bits (100), Expect = 2e-05
Identities = 11/92 (11%), Positives = 22/92 (23%), Gaps = 4/92 (4%)
Query: 37 NPPPKKILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKEL 96
+ Y GK + V A I+ +
Sbjct: 5 VKQGPTSVAYVEVNNNSMLNVGKYTLADGGGNA--FDVAVIFAANINYDTGTKTAYLHFN 62
Query: 97 DTDKNKGHELYKQVTALKTSYPDLNIILGVGG 128
+ + Q+ L+ + ++L V G
Sbjct: 63 ENVQRVLDNAVTQIRPLQ--QQGIKVLLSVLG 92
>3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A
{Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A*
3n18_A* 3n1a_A*
Length = 333
Score = 42.6 bits (100), Expect = 3e-05
Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 13/93 (13%)
Query: 36 DNPPPKKILCYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKE 95
+N K ++ Y+ + G G + +++ P + ++ D
Sbjct: 2 NNLGSKLLVGYW--HNF-DNGTGIIKLKDVSPKW---DVINVSFGET-GGDRSTVEFSPV 54
Query: 96 LDTDKNKGHELYKQVTALKTSYPDLNIILGVGG 128
TD + ++ LK+ ++L +GG
Sbjct: 55 YGTDA----DFKSDISYLKSK--GKKVVLSIGG 81
Score = 32.6 bits (74), Expect = 0.061
Identities = 15/113 (13%), Positives = 36/113 (31%), Gaps = 16/113 (14%)
Query: 79 YAGISNSDYHIKSLD-KELDTDK-NKGHELYKQVTALKTSYPDLNIILGV---------G 127
G+ ++Y+ + D + D G + + + +++G+ G
Sbjct: 205 GIGMDGNNYNQGTADYEVAMADMLLHGFPVGGNANNIFPALRSDQVMIGLPAAPAAAPSG 264
Query: 128 GFEDQKDKEKYLDLVIHTVGVKAAYAKQ-----NGLAGVAMVDLSLDDFKGNC 175
G+ + +K L+ +I V Y G+ ++ D
Sbjct: 265 GYISPTEMKKALNYIIKGVPFGGKYKLSNQSGYPAFRGLMSWSINWDAKNNFE 317
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural
genomics, uncharacterized protein, protein struct
initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Length = 319
Score = 40.1 bits (94), Expect = 2e-04
Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 11/60 (18%)
Query: 116 SYPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFKGNC 175
Y D FE + ++ K ++ L + L+L + +
Sbjct: 269 RYSDQQGRTHEVWFEGVR-----------SMSRKMQIVREYRLQAIGAWQLTLAEGHHHH 317
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.003
Identities = 24/179 (13%), Positives = 52/179 (29%), Gaps = 61/179 (34%)
Query: 41 KKILCYYNHEAYKREGKGKVATEELRPALTT--CTHLVYAYAGISNSDYHIKSLDKELDT 98
K IL +A+ K + + L+ H++ S + + T
Sbjct: 19 KDIL-SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII-------MSKDAVSGTLRLFWT 70
Query: 99 DKNKGHELYKQ--VTALKTSY-------------PDLNIILGVGGFEDQKDK-------- 135
+K E+ ++ L+ +Y P + + + +Q+D+
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM----YIEQRDRLYNDNQVF 126
Query: 136 --------EKYLDLVIHTVGVK-AAYAKQNGLAGVAMVDLSLDDFKGNCGEKYVLVKSA 185
+ YL L + ++ A +G+ G G K +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG--------------SG-KTWVALDV 170
Score = 29.1 bits (64), Expect = 0.98
Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 24/104 (23%)
Query: 53 KREGKG------KVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNKGHEL 106
E K ++L + T + +S+ L T N H
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA--------ESIRDGLATWDNWKHVN 351
Query: 107 YKQV-TALKTSYPDLNIILGVGGFEDQKDKEKYLDLVIHTVGVK 149
++ T +++S L E + ++ + L +
Sbjct: 352 CDKLTTIIESSLNVL---------EPAEYRKMFDRLSVFPPSAH 386
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 28.6 bits (64), Expect = 0.58
Identities = 6/48 (12%), Positives = 11/48 (22%), Gaps = 8/48 (16%)
Query: 54 REGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
++ EE R +D L E+ +
Sbjct: 35 TMKTNTISREEFRAICNR--------RVQILTDEQFDRLWNEMPVNAK 74
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 28.4 bits (64), Expect = 0.65
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 54 REGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDK 100
++ G + +EL+ L V++ + +D K+ K D+D
Sbjct: 53 QDKSGFIEEDELKLFLQ-----VFSAGARALTDAETKAFLKAGDSDG 94
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN;
1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Length = 350
Score = 28.4 bits (64), Expect = 1.5
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 107 YKQVTALKTSYPDLNIIL--GVGGFEDQKDKEKYLDLVIHTVGVKAAY 152
+ V LK +P L + G+ E+ K +D V+ +G +A Y
Sbjct: 185 HDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLKRVDGVM--LG-RAVY 229
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 26.5 bits (59), Expect = 1.9
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 11/56 (19%)
Query: 50 EAYK---REGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKNK 102
EA++ ++ K+ EEL + G + + I + K+ D D +
Sbjct: 18 EAFQLFDKDNDNKLTAEELGTVMRAL--------GANPTKQKISEIVKDYDKDNSG 65
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 2.6
Identities = 20/100 (20%), Positives = 28/100 (28%), Gaps = 28/100 (28%)
Query: 10 SLLAVLVSCGQAATKSKVKYIPIN--LE--DNPPPKKIL----------------CYYNH 49
L+ L+ A K + + I LE N P K L Y
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV- 251
Query: 50 EAYKREGKGKVATEELRP---ALTTCTHLVYAYAGISNSD 86
K G ELR T + + I+ +D
Sbjct: 252 -TAKLLG---FTPGELRSYLKGATGHSQGLVTAVAIAETD 287
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 27.0 bits (59), Expect = 4.1
Identities = 8/48 (16%), Positives = 18/48 (37%)
Query: 54 REGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
+ G ++ EL+ L + D + ++ K D +K+
Sbjct: 115 ADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKD 162
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 27.0 bits (60), Expect = 4.2
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 56 GKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
G G++ +EL + + N + + ++ KE+D DKN
Sbjct: 368 GDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKN 413
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 25.6 bits (57), Expect = 4.8
Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
Query: 50 EAYK---REGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
A+ +G G ++T+EL + G + + + ++ +E+D D +
Sbjct: 24 AAFDMFDADGGGDISTKELGTVMRML--------GQNPTKEELDAIIEEVDEDGS 70
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 25.6 bits (57), Expect = 5.0
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 8/48 (16%)
Query: 54 REGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
+ G + +EL+ L G + IK L D DK+
Sbjct: 34 TDNSGTITFDELKDGLKRV--------GSELMESEIKDLMDAADIDKS 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 27.0 bits (59), Expect = 5.3
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 34 LEDNPPPKKIL-----CYYNHEAYKREGKGKVATEELRPALTTCTHLVYAYAGIS 83
L +N K C+ ++ KR K K E L LV Y ++
Sbjct: 54 LTENEKLDKPFEYLNDCFRRNQQQKRITKNKPNAESLHSTFQEIDRLVIGYGVVA 108
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex,
kinase inhibitor complex, transferase-transferase
activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB:
1h4l_D
Length = 149
Score = 26.0 bits (57), Expect = 6.6
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 57 KGKVATE-ELRPALTTCTHLVYAYAG 81
+V ++ EL+ L TC +L Y+Y G
Sbjct: 69 SSEVGSDHELQAVLLTCLYLSYSYMG 94
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A*
2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A*
2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A*
3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 26.0 bits (58), Expect = 6.9
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 139 LDLVIHTVGVKAAYAKQNGLAGVAMVDLSLDDFK 172
LD V+H++ + Q G+ D D
Sbjct: 88 LDGVVHSI----GFMPQTGMGINPFFDAPYADVS 117
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 25.9 bits (57), Expect = 7.0
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 8/48 (16%)
Query: 54 REGKGKVATEELRPALTTCTHLVYAYAGISNSDYHIKSLDKELDTDKN 101
++G G + +E + GIS S ++ + D D
Sbjct: 124 KDGSGTITLDEWKAYGKIS--------GISPSQEDCEATFRHCDLDNA 163
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 25.7 bits (57), Expect = 7.4
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 146 VGVKAAYAKQNGLAGVAMVDLSLDDFKGNCGEKYVLV 182
VG A Y G + S + F+ +Y+L+
Sbjct: 7 VGKSAPYFSLPNEKG-EKLSRSAERFRN----RYLLL 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.394
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,897,571
Number of extensions: 168969
Number of successful extensions: 456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 68
Length of query: 190
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,244,745
Effective search space: 432963990
Effective search space used: 432963990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.6 bits)