BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13765
(606 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 110/224 (49%), Gaps = 22/224 (9%)
Query: 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG-----HSRNIN 104
+VLK + +++ ++GPSG+GKS+ L L+ + G+I+ +G N+N
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN-LLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
R + Q L P +T+ N ++L + + R +K + A+EL++
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPR--------EKAEAKAMELLDK-- 146
Query: 165 VMFLDEPTTSNPND----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMI 220
+ L + + P+ Q +R++IA L P++M DEPT+ LD + + + ++K +
Sbjct: 147 -VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL 205
Query: 221 SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
+ +G T++ H+ ++ D+V + GG + +G + L +
Sbjct: 206 ANEGMTMVVVTHE-MGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 110/224 (49%), Gaps = 22/224 (9%)
Query: 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG-----HSRNIN 104
+VLK + +++ ++GPSG+GKS+ L L+ + G+I+ +G N+N
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN-LLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
R + Q L P +T+ N ++L + + R +K + A+EL++
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPR--------EKAEAKAMELLDK-- 125
Query: 165 VMFLDEPTTSNPND----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMI 220
+ L + + P+ Q +R++IA L P++M DEPT+ LD + + + ++K +
Sbjct: 126 -VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL 184
Query: 221 SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
+ +G T++ H+ ++ D+V + GG + +G + L +
Sbjct: 185 ANEGMTMVVVTHE-MGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 22/228 (9%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVS 110
VLK++ F + ++ ++G +G+GK++LL +L+G + G+I +G + R+
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLA--AAGEIFLDGSPADPFLLRKNV 83
Query: 111 CYIQQDDRLQPL-LTIEN----VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV 165
Y+ Q+ Q + T+E + ++GLDES+ +KR+ LEL+ +
Sbjct: 84 GYVFQNPSSQIIGATVEEDVAFSLEIMGLDESE----------MRKRIKKVLELVGLSGL 133
Query: 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
D S QK+RL+IA L + R + LDEP + LD S + ++L+ + +G+
Sbjct: 134 AAADPLNLSGG--QKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGK 191
Query: 226 TIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNY-LSSVNLP 272
II H+ D + +S G + G+ ++ V V +P
Sbjct: 192 GIILVTHE--LEYLDDMDFILHISNGTIDFCGSWEEFVEREFDDVEIP 237
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 122/244 (50%), Gaps = 25/244 (10%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
+I F+++ + +K + +L N+ ++I I+G SG+GKS+L ++ +
Sbjct: 3 DITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 56
Query: 88 NGVTGQILTNGHS---RNINAFRRVSCYIQQDDRLQPLLTIENV-MSLLGLDESQNTRSS 143
GQ+L +GH + N RR + QD+ L I+N+ ++ G+ + ++
Sbjct: 57 PE-NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 115
Query: 144 QLSGGQKKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
+L+G A + I+ R + + E Q++R++IA L+NNP+++ DE
Sbjct: 116 KLAG--------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 167
Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
T+ LD +S ++ + I +GRT+I H+ S + D++ ++ G+ + QG
Sbjct: 168 ATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTV--KNADRIIVMEKGKIVEQGKHK 224
Query: 261 QLVN 264
+L++
Sbjct: 225 ELLS 228
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 122/244 (50%), Gaps = 25/244 (10%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
+I F+++ + +K + +L N+ ++I I+G SG+GKS+L ++ +
Sbjct: 1 DITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 54
Query: 88 NGVTGQILTNGHS---RNINAFRRVSCYIQQDDRLQPLLTIENV-MSLLGLDESQNTRSS 143
GQ+L +GH + N RR + QD+ L I+N+ ++ G+ + ++
Sbjct: 55 PE-NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 113
Query: 144 QLSGGQKKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
+L+G A + I+ R + + E Q++R++IA L+NNP+++ DE
Sbjct: 114 KLAG--------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 165
Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
T+ LD +S ++ + I +GRT+I H+ S + D++ ++ G+ + QG
Sbjct: 166 ATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTV--KNADRIIVMEKGKIVEQGKHK 222
Query: 261 QLVN 264
+L++
Sbjct: 223 ELLS 226
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 122/244 (50%), Gaps = 25/244 (10%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
+I F+++ + +K + +L N+ ++I I+G SG+GKS+L ++ +
Sbjct: 7 DITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 88 NGVTGQILTNGHS---RNINAFRRVSCYIQQDDRLQPLLTIENV-MSLLGLDESQNTRSS 143
GQ+L +GH + N RR + QD+ L I+N+ ++ G+ + ++
Sbjct: 61 PE-NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 119
Query: 144 QLSGGQKKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
+L+G A + I+ R + + E Q++R++IA L+NNP+++ DE
Sbjct: 120 KLAG--------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 171
Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
T+ LD +S ++ + I +GRT+I H+ S + D++ ++ G+ + QG
Sbjct: 172 ATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTV--KNADRIIVMEKGKIVEQGKHK 228
Query: 261 QLVN 264
+L++
Sbjct: 229 ELLS 232
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 108/220 (49%), Gaps = 19/220 (8%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
IK K++T T G +E LKN+ + ++IMGPSG+GKS++L+++ G
Sbjct: 2 IKLKNVTKTYKMG----EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDK 56
Query: 89 GVTGQILTNGHSRN------INAFRRVSC-YIQQDDRLQPLLT-IENVMSLLGLDESQNT 140
G++ + N + RR ++ Q L PLLT +ENV L
Sbjct: 57 PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIF-----K 111
Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
+SG ++++ ++ + F + Q++R++IA L NNP ++ D+
Sbjct: 112 YRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ 171
Query: 201 PTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLF 239
PT LDS++ + ++LLK ++++ G+T++ H + F
Sbjct: 172 PTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARF 211
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 108/220 (49%), Gaps = 19/220 (8%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
+K K++T T G +E LKN+ + ++IMGPSG+GKS++L+++ G
Sbjct: 2 VKLKNVTKTYKMG----EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDK 56
Query: 89 GVTGQILTNGHSRN------INAFRRVSC-YIQQDDRLQPLLT-IENVMSLLGLDESQNT 140
G++ + N + RR ++ Q L PLLT +ENV L
Sbjct: 57 PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIF-----K 111
Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
+SG ++++ ++ + F + Q++R++IA L NNP ++ D+
Sbjct: 112 YRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ 171
Query: 201 PTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLF 239
PT LDS++ + ++LLK ++++ G+T++ H + F
Sbjct: 172 PTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARF 211
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 122/244 (50%), Gaps = 25/244 (10%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
+I F+++ + +K + +L N+ ++I I+G +G+GKS+L ++ +
Sbjct: 3 DITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYI 56
Query: 88 NGVTGQILTNGHS---RNINAFRRVSCYIQQDDRLQPLLTIENV-MSLLGLDESQNTRSS 143
GQ+L +GH + N RR + QD+ L I+N+ ++ G+ + ++
Sbjct: 57 PE-NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 115
Query: 144 QLSGGQKKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
+L+G A + I+ R + + E Q++R++IA L+NNP+++ DE
Sbjct: 116 KLAG--------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 167
Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
T+ LD +S ++ + I +GRT+I H+ S + D++ ++ G+ + QG
Sbjct: 168 ATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTV--KNADRIIVMEKGKIVEQGKHK 224
Query: 261 QLVN 264
+L++
Sbjct: 225 ELLS 228
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 122/244 (50%), Gaps = 25/244 (10%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
+I F+++ + +K + +L N+ ++I I+G SG+GKS+L ++ +
Sbjct: 7 DITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 88 NGVTGQILTNGHS---RNINAFRRVSCYIQQDDRLQPLLTIENV-MSLLGLDESQNTRSS 143
GQ+L +GH + N RR + QD+ L I+N+ ++ G+ + ++
Sbjct: 61 PE-NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 119
Query: 144 QLSGGQKKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
+L+G A + I+ R + + E Q++R++IA L+NNP+++ D+
Sbjct: 120 KLAG--------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQ 171
Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
T+ LD +S ++ + I +GRT+I H+ S + D++ ++ G+ + QG
Sbjct: 172 ATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTV--KNADRIIVMEKGKIVEQGKHK 228
Query: 261 QLVN 264
+L++
Sbjct: 229 ELLS 232
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 122/242 (50%), Gaps = 24/242 (9%)
Query: 24 ADRI--EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDV 81
A+R+ E+ KD+T+T ++ + K L ++ P + +A++G SG+GKS++ ++
Sbjct: 335 AERVNGEVDVKDVTFT------YQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANL 388
Query: 82 LSGYRSNGVTGQILTNGHS---RNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQ 138
+ + +G I +GH + RR + Q+ L TI N ++ E +
Sbjct: 389 FTRFYDVD-SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAA--EGE 444
Query: 139 NTRSSQLSGGQKKRLSIALELINN-PRVM--FLDEPTTSNPNDQKKRLSIALELINNPRV 195
TR Q+ Q R + A+E I N P+ + + E TS Q++R++IA L+ + V
Sbjct: 445 YTRE-QIE--QAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPV 501
Query: 196 MFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255
+ LDE T+ LD++S L + Q+ +T++ H+ S + D++ ++ G+ +
Sbjct: 502 LILDEATSALDTESERAIQAALDEL-QKNKTVLVIAHRLST--IEQADEILVVDEGEIIE 558
Query: 256 QG 257
+G
Sbjct: 559 RG 560
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 34/179 (18%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF---- 106
+LK++ + +A +G SG GKS+L++++ + + +GQIL +GH NI F
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF-YDVTSGQILIDGH--NIKDFLTGS 412
Query: 107 -RRVSCYIQQDDRL------------QPLLTIENVMSLL--------------GLDESQN 139
R +QQD+ L +P T E V+ G D
Sbjct: 413 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVG 472
Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFL 198
R +LSGGQK+RLSIA +NNP ++ LDE T++ + + + AL++++ R +
Sbjct: 473 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLI 531
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 16/223 (7%)
Query: 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---SRNI 103
+ + +L+++ N +IA GPSG GKS++ +L + G+I +G + ++
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP-TAGEITIDGQPIDNISL 71
Query: 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN- 162
+R ++ QD + EN+ L D + L L+ A + N
Sbjct: 72 ENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLD------LAFARSFVENM 125
Query: 163 PRVMFLD--EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMI 220
P + + E Q++RL+IA + NP+++ LDE T LDS+S S K L +
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL 185
Query: 221 SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
+GRT + H+ S + D++Y + GQ G ++LV
Sbjct: 186 -MKGRTTLVIAHRLSTIVDA--DKIYFIEKGQITGSGKHNELV 225
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 121/244 (49%), Gaps = 25/244 (10%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
+I F+++ + +K + +L N+ ++I I+G SG+GKS+L ++ +
Sbjct: 1 DITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 54
Query: 88 NGVTGQILTNGHS---RNINAFRRVSCYIQQDDRLQPLLTIENV-MSLLGLDESQNTRSS 143
GQ+L +GH + N RR + QD+ L I+N+ ++ G+ + ++
Sbjct: 55 PE-NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 113
Query: 144 QLSGGQKKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
+L+G A + I+ R + + E Q++R++IA L+NNP+++ DE
Sbjct: 114 KLAG--------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 165
Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
T+ LD +S ++ + I +GRT+I + S + D++ ++ G+ + QG
Sbjct: 166 ATSALDYESEHVIMRNMHKIC-KGRTVIIIAARLSTV--KNADRIIVMEKGKIVEQGKHK 222
Query: 261 QLVN 264
+L++
Sbjct: 223 ELLS 226
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 121/244 (49%), Gaps = 25/244 (10%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
+I F+++ + +K + +L N+ ++I I+G SG+GKS+L ++ +
Sbjct: 7 DITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 88 NGVTGQILTNGHS---RNINAFRRVSCYIQQDDRLQPLLTIENV-MSLLGLDESQNTRSS 143
GQ+L +GH + N RR + QD+ L I+N+ ++ G+ + ++
Sbjct: 61 PE-NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 119
Query: 144 QLSGGQKKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
+L+G A + I+ R + + E Q++R++IA L+NNP+++ DE
Sbjct: 120 KLAG--------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 171
Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
T+ LD +S ++ + I +GRT+I + S + D++ ++ G+ + QG
Sbjct: 172 ATSALDYESEHVIMRNMHKIC-KGRTVIIIAARLSTV--KNADRIIVMEKGKIVEQGKHK 228
Query: 261 QLVN 264
+L++
Sbjct: 229 ELLS 232
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 10/227 (4%)
Query: 42 LGFKQEPK-DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG-- 98
+ + P+ ++LK L Q +A++GPSG GKS+++ +L + + G+I +G
Sbjct: 1084 FAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT-LGGEIFIDGSE 1142
Query: 99 -HSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIAL 157
+ N R + Q+ L EN+ + GLD S T + + + +
Sbjct: 1143 IKTLNPEHTRSQIAIVSQEPTLFDCSIAENI--IYGLDPSSVTMAQVEEAARLANIHNFI 1200
Query: 158 ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL 217
+ + + T QK+R++IA L+ NP+++ LDE T+ LD++S + L
Sbjct: 1201 AELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL 1260
Query: 218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
+++GRT I H+ + + D + ++S G + +G QL++
Sbjct: 1261 DR-AREGRTCIVIAHRLNTVMNA--DCIAVVSNGTIIEKGTHTQLMS 1304
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG-HSRNINA--FR 107
+L+ + R + Q +A++G SG GKS+++ +L Y + + G+I +G R+IN R
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY-DVLKGKITIDGVDVRDINLEFLR 491
Query: 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMF 167
+ + Q+ L EN+ L + TR ++ + ++ + N
Sbjct: 492 KNVAVVSQEPALFNCTIEENI----SLGKEGITREEMVAACKMANAEKFIKTLPNGYNTL 547
Query: 168 LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTI 227
+ + T QK+R++IA L+ NP+++ LDE T+ LD++S + L + +GRT
Sbjct: 548 VGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK-AAKGRTT 606
Query: 228 ICTIHQPS 235
I H+ S
Sbjct: 607 IIIAHRLS 614
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 106/222 (47%), Gaps = 23/222 (10%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
IK K++T T G +E LKN+ + ++I GPSG+GKS+ L+++ G
Sbjct: 2 IKLKNVTKTYKXG----EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNII-GCLDK 56
Query: 89 GVTGQILTNGHSRN------INAFRRVSC-YIQQDDRLQPLLT-IENVMSLLGLDESQNT 140
G++ + N + RR ++ Q L PLLT +ENV L
Sbjct: 57 PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIF----KY 112
Query: 141 RSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPNDQKKRLSIALELINNPRVMFL 198
R + ++KR ALE + + F + Q++R++IA L NNP ++
Sbjct: 113 RGAXSGEERRKR---ALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILA 169
Query: 199 DEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLF 239
DEPT LDS++ + +LLK ++++ G+T++ H + F
Sbjct: 170 DEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARF 211
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/216 (19%), Positives = 105/216 (48%), Gaps = 21/216 (9%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVS 110
L NL + S + I+GP+GAGK+ L++++G+ +G+IL +G +++ +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLSPEKHDI 74
Query: 111 CYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
++ Q+ L P + ++ + G + K++ +++ R + ++
Sbjct: 75 AFVYQNYSLFPHMNVKKNLEF---------------GMRMKKIKDPKRVLDTARDLKIEH 119
Query: 171 PTTSNP----NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRT 226
NP +++R+++A L+ NP+++ LDEP + LD ++ ++L ++ ++ +
Sbjct: 120 LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179
Query: 227 IICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
+ I M D++ ++ G+ + G +++
Sbjct: 180 TVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 111/234 (47%), Gaps = 30/234 (12%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--YRSNGVTGQILTNGHSRNINAF 106
K++LK + ++ ++GP+GAGK++ L ++S S+G+ + +
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV-TVFGKNVVEEPHEV 86
Query: 107 RRVSCYI-QQDDRLQPLLTIENVMSLLGLDESQNT-------RSSQLSG-GQKKRLSIAL 157
R++ Y+ ++ + + IE + + G S ++ R+++++G G+K
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK------- 139
Query: 158 ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL 217
+ + ++ ++L IA L+ NPR+ LDEPT+GLD + + K+L
Sbjct: 140 ----------IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKIL 189
Query: 218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNL 271
K SQ+G TI+ + H F + D++ L+ G + G ++L + N+
Sbjct: 190 KQASQEGLTILVSSHNMLEVEF-LCDRIALIHNGTIVETGTVEELKERYKAQNI 242
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 117/258 (45%), Gaps = 29/258 (11%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
+K ++L Y S G LK + ++ AI+G +G GKS+L +G
Sbjct: 8 LKVEELNYNYSDGT-------HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP 60
Query: 89 GVTGQILTNGH-----SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSS 143
+G+IL + + I R + QD Q L +V D S +
Sbjct: 61 S-SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQ--LFSASVYQ----DVSFGAVNM 113
Query: 144 QLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202
+L + +KR+ AL+ + D+PT QKKR++IA L+ P+V+ LDEPT
Sbjct: 114 KLPEDEIRKRVDNALKRTGIEHLK--DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPT 171
Query: 203 TGLDSQSCSQCIKLL-KMISQQGRTIICTIHQPSATLFQMF-DQVYLLSGGQCLYQGATD 260
GLD S+ +KLL +M + G TII H + ++ D V+++ G+ + QG
Sbjct: 172 AGLDPMGVSEIMKLLVEMQKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVILQGNPK 229
Query: 261 QLV---NYLSSVNLPCPK 275
++ + VNL P+
Sbjct: 230 EVFAEKEVIRKVNLRLPR 247
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 114/236 (48%), Gaps = 22/236 (9%)
Query: 39 STGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--RSNGVTGQILT 96
++ L + + + ++ ++ S +++AI+GP+GAGKS+LL +L+GY S+G +
Sbjct: 14 ASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQ 73
Query: 97 NGHSRNINAFRRVSCYIQQDDRLQPLLTIENV--MSLLGLDESQNTRSSQLSGGQKKRLS 154
N +S A R ++Q L ++ V M SQ+ ++ Q Q L+
Sbjct: 74 NLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA 133
Query: 155 IALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNP----RVMFLDEPTTGLDSQSC 210
+A D S Q+ +L+ L + P R +FLDEPT+ LD
Sbjct: 134 LAQR----------DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQ 183
Query: 211 SQCIKLLKMIS-QQGRTIICTIHQPS-ATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
++LL+ ++ Q+ + C +H + A L+ D++ LL+ G+ + G ++++N
Sbjct: 184 QHTLRLLRQLTRQEPLAVCCVLHDLNLAALY--ADRIMLLAQGKLVACGTPEEVLN 237
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 44/231 (19%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT----GQILTNGHSRNINAFR 107
L L G + +++ ++GP+GAGKS+LL +G S + GQ L + + R
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 108 R-------------VSCYI--QQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKR 152
V Y+ Q D+ + L + +V L LD+ ++QLSGG+ +R
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-LNDVAGALALDDKLGRSTNQLSGGEWQR 134
Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
+ +A + L +NP Q ++ LDEP LD S
Sbjct: 135 VRLA--------AVVLQITPQANPAGQ---------------LLLLDEPXNSLDVAQQSA 171
Query: 213 CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
K+L +SQQG I+ + H + TL + +LL GG+ L G ++++
Sbjct: 172 LDKILSALSQQGLAIVXSSHDLNHTLRHAH-RAWLLKGGKXLASGRREEVL 221
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 102/231 (44%), Gaps = 44/231 (19%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT----GQILTNGHSRNINAFR 107
L L G + +++ ++GP+GAGKS+LL ++G S + GQ L + + R
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 108 R-------------VSCYI--QQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKR 152
V Y+ Q D+ + L + +V L LD+ ++QLSGG+ +R
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-LNDVAGALALDDKLGRSTNQLSGGEWQR 134
Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
+ +A + L +NP Q ++ LD+P LD S
Sbjct: 135 VRLA--------AVVLQITPQANPAGQ---------------LLLLDQPMNSLDVAQQSA 171
Query: 213 CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
K+L +SQQG I+ + H + TL + +LL GG+ L G ++++
Sbjct: 172 LDKILSALSQQGLAIVMSSHDLNHTLRHAH-RAWLLKGGKMLASGRREEVL 221
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 102/231 (44%), Gaps = 44/231 (19%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT----GQILTNGHSRNINAFR 107
L L G + +++ ++GP+GAGKS+LL ++G S + GQ L + + R
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 108 R-------------VSCYI--QQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKR 152
V Y+ Q D+ + L + +V L LD+ ++QLSGG+ +R
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-LNDVAGALALDDKLGRSTNQLSGGEWQR 134
Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
+ +A + L +NP Q ++ LD+P LD S
Sbjct: 135 VRLA--------AVVLQITPQANPAGQ---------------LLLLDQPMCSLDVAQQSA 171
Query: 213 CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
K+L +SQQG I+ + H + TL + +LL GG+ L G ++++
Sbjct: 172 LDKILSALSQQGLAIVMSSHDLNHTLRHAH-RAWLLKGGKMLASGRREEVL 221
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 117/247 (47%), Gaps = 28/247 (11%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
+++F+++T+T + L+N+ + P+ + +A++G SG+GKS++ +++ +
Sbjct: 341 DVEFRNVTFT------YPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394
Query: 88 NGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN---TRSSQ 144
G+IL +GH + Y R Q L +NV L + N R+ Q
Sbjct: 395 ID-EGEILMDGHD--------LREYTLASLRNQVALVSQNV-HLFNDTVANNIAYARTEQ 444
Query: 145 LSGGQ---KKRLSIALELIN---NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFL 198
S Q R++ A++ IN N + E Q++R++IA L+ + ++ L
Sbjct: 445 YSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILIL 504
Query: 199 DEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258
DE T+ LD++S L + Q+ RT + H+ S + D++ ++ G + +G
Sbjct: 505 DEATSALDTESERAIQAALDEL-QKNRTSLVIAHRLST--IEKADEIVVVEDGVIVERGT 561
Query: 259 TDQLVNY 265
+ L+ +
Sbjct: 562 HNDLLEH 568
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 115/269 (42%), Gaps = 63/269 (23%)
Query: 25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS- 83
D+ IK ++T G Q L N+ P+ Q+ ++G SGAGKS+L+ ++
Sbjct: 21 DKHXIKLSNITKVFHQGTRTIQ----ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76
Query: 84 -GYRSNG---VTGQILTN-GHSRNINAFRRVSCYIQQDDRLQPLLTIENV---------- 128
+ G V GQ LT S A R++ Q + L NV
Sbjct: 77 LERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTP 136
Query: 129 -----------MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
+SL+GL + ++ S LSGGQK+R++IA L +NP+V+ D+ T++
Sbjct: 137 KDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA--- 193
Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSA 236
LD + ++LLK I+++ G TI+ H+
Sbjct: 194 ---------------------------LDPATTRSILELLKDINRRLGLTILLITHEXDV 226
Query: 237 TLFQMFDQVYLLSGGQCLYQGATDQLVNY 265
+ ++ D V ++S G+ + Q ++ ++
Sbjct: 227 -VKRICDCVAVISNGELIEQDTVSEVFSH 254
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 113/265 (42%), Gaps = 63/265 (23%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS--GYR 86
IK ++T G Q L N+ P+ Q+ ++G SGAGKS+L+ ++
Sbjct: 2 IKLSNITKVFHQGTRTIQ----ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 57
Query: 87 SNG---VTGQILTN-GHSRNINAFRRVSCYIQQDDRLQPLLTIENV-------------- 128
+ G V GQ LT S A R++ Q + L NV
Sbjct: 58 TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 117
Query: 129 -------MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181
+SL+GL + ++ S LSGGQK+R++IA L +NP+V+ DE T++
Sbjct: 118 KRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSA------- 170
Query: 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQ 240
LD + ++LLK I+++ G TI+ H+ + +
Sbjct: 171 -----------------------LDPATTRSILELLKDINRRLGLTILLITHEMDV-VKR 206
Query: 241 MFDQVYLLSGGQCLYQGATDQLVNY 265
+ D V ++S G+ + Q ++ ++
Sbjct: 207 ICDCVAVISNGELIEQDTVSEVFSH 231
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 115/269 (42%), Gaps = 63/269 (23%)
Query: 25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS- 83
D+ IK ++T G Q L N+ P+ Q+ ++G SGAGKS+L+ ++
Sbjct: 21 DKHMIKLSNITKVFHQGTRTIQ----ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76
Query: 84 -GYRSNG---VTGQILTN-GHSRNINAFRRVSCYIQQDDRLQPLLTIENV---------- 128
+ G V GQ LT S A R++ Q + L NV
Sbjct: 77 LERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP 136
Query: 129 -----------MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
+SL+GL + ++ S LSGGQK+R++IA L +NP+V+ D+ T++
Sbjct: 137 KDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA--- 193
Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSA 236
LD + ++LLK I+++ G TI+ H+
Sbjct: 194 ---------------------------LDPATTRSILELLKDINRRLGLTILLITHEMDV 226
Query: 237 TLFQMFDQVYLLSGGQCLYQGATDQLVNY 265
+ ++ D V ++S G+ + Q ++ ++
Sbjct: 227 -VKRICDCVAVISNGELIEQDTVSEVFSH 254
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 100/231 (43%), Gaps = 44/231 (19%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT----GQILTNGHSRNINAFR 107
L L G + +++ ++GP+GAGKS+LL +G S + GQ L + + R
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 108 R-------------VSCYI--QQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKR 152
V Y+ Q D+ + L + +V L LD+ ++QLSGG+ +R
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-LNDVAGALALDDKLGRSTNQLSGGEWQR 134
Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
+ +A + L +NP Q ++ LDEP LD S
Sbjct: 135 VRLA--------AVVLQITPQANPAGQ---------------LLLLDEPXNSLDVAQQSA 171
Query: 213 CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
K+L + QQG I+ + H + TL + +LL GG+ L G ++++
Sbjct: 172 LDKILSALCQQGLAIVXSSHDLNHTLRHAH-RAWLLKGGKXLASGRREEVL 221
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 35/228 (15%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR--NINAFRRVSCYIQQDDR 118
+ + +GPSG GKS+LL +++G + +T L G R + R + Q
Sbjct: 28 EGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85
Query: 119 LQPLLTIENVMSLLGLDESQNTRSSQLSGGQK----KRLSIALELINNPRVMFLDEPTTS 174
L P L++ MS GL +L+G +K +R++ E++ LD +
Sbjct: 86 LYPHLSVAENMSF-GL---------KLAGAKKEVINQRVNQVAEVLQ--LAHLLDRKPKA 133
Query: 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC-IKLLKMISQQGRTIICTIHQ 233
Q++R++I L+ P V LDEP + LD+ Q I++ ++ + GRT+I H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 234 PSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPAD 281
+ D++ +L G+ ++ V P YH PAD
Sbjct: 194 -QVEAMTLADKIVVLDAGR-------------VAQVGKPLELYHYPAD 227
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 35/228 (15%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR--NINAFRRVSCYIQQDDR 118
+ + +GPSG GKS+LL +++G + +T L G R + R + Q
Sbjct: 28 EGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85
Query: 119 LQPLLTIENVMSLLGLDESQNTRSSQLSGGQK----KRLSIALELINNPRVMFLDEPTTS 174
L P L++ MS GL +L+G +K +R++ E++ LD +
Sbjct: 86 LYPHLSVAENMSF-GL---------KLAGAKKEVINQRVNQVAEVLQ--LAHLLDRKPKA 133
Query: 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC-IKLLKMISQQGRTIICTIHQ 233
Q++R++I L+ P V LDEP + LD+ Q I++ ++ + GRT+I H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 234 PSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPAD 281
+ D++ +L G+ ++ V P YH PAD
Sbjct: 194 -QVEAMTLADKIVVLDAGR-------------VAQVGKPLELYHYPAD 227
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 112/245 (45%), Gaps = 30/245 (12%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSS-------LLDV 81
++FK++ ++ + ++ +LK L + S Q +A++G SG GKS+ L D
Sbjct: 388 LEFKNIHFSYPS-----RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442
Query: 82 LSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM---SLLGLDESQ 138
L G S + GQ + + N+ R + + Q+ L EN+ + +DE +
Sbjct: 443 LDGMVS--IDGQDI---RTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIE 497
Query: 139 NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFL 198
+ ++L + + + E QK+R++IA L+ NP+++ L
Sbjct: 498 KAVK------EANAYDFIMKLPHQFDTL-VGERGAQLSGGQKQRIAIARALVRNPKILLL 550
Query: 199 DEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258
DE T+ LD++S + L +++GRT I H+ S + D + GG + QG
Sbjct: 551 DEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLSTV--RNADVIAGFDGGVIVEQGN 607
Query: 259 TDQLV 263
D+L+
Sbjct: 608 HDELM 612
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 9/216 (4%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS---RNINAFR 107
VL+ L Q +A++G SG GKS+++ +L + + + G + +G N+ R
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY-DPMAGSVFLDGKEIKQLNVQWLR 1106
Query: 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMF 167
+ Q+ L EN+ G + + + ++ + ++ + +
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIA--YGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTR 1164
Query: 168 LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTI 227
+ + T QK+R++IA L+ P ++ LDE T+ LD++S + L +++GRT
Sbjct: 1165 VGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTC 1223
Query: 228 ICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
I H+ S Q D + ++ G+ G QL+
Sbjct: 1224 IVIAHRLST--IQNADLIVVIQNGKVKEHGTHQQLL 1257
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 17/230 (7%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINA--FRRVSCYIQQD 116
PS + A++GPSG+GKS++L +L + +G I +GH R +N R + Q+
Sbjct: 368 PSGSVTALVGPSGSGKSTVLSLLLRLY-DPASGTISLDGHDIRQLNPVWLRSKIGTVSQE 426
Query: 117 DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMF---LDEPTT 173
L EN+ G D+ + + ++ + ++ A+ I N F + E
Sbjct: 427 PILFSCSIAENIA--YGADDPSSVTAEEIQ--RVAEVANAVAFIRNFPQGFNTVVGEKGV 482
Query: 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQ 233
QK+R++IA L+ NP+++ LDE T+ LD+++ + L + GRT++ H+
Sbjct: 483 LLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVIAHR 541
Query: 234 PSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFV 283
S + + V +L G+ G ++L LS N K N F+
Sbjct: 542 LST--IKNANMVAVLDQGKITEYGKHEEL---LSKPNGIYRKLMNKQSFI 586
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 25/223 (11%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSS-------LLDVLSGYRSNGVTGQILTNGHSRNI 103
+LK L + S Q +A++G SG GKS+ L D L G S + GQ + + N+
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS--IDGQDI---RTINV 459
Query: 104 NAFRRVSCYIQQDDRLQPLLTIENVM---SLLGLDESQNTRSSQLSGGQKKRLSIALELI 160
R + + Q+ L EN+ + +DE + + ++L
Sbjct: 460 RYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVK------EANAYDFIMKLP 513
Query: 161 NNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMI 220
+ + + E QK+R++IA L+ NP+++ LDE T+ LD++S + L
Sbjct: 514 HQFDTL-VGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK- 571
Query: 221 SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
+++GRT I H+ S + D + GG + QG D+L+
Sbjct: 572 AREGRTTIVIAHRLSTV--RNADVIAGFDGGVIVEQGNHDELM 612
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 9/216 (4%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS---RNINAFR 107
VL+ L Q +A++G SG GKS+++ +L + + + G + +G N+ R
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY-DPMAGSVFLDGKEIKQLNVQWLR 1106
Query: 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMF 167
+ Q+ L EN+ G + + + ++ + ++ + +
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIA--YGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTR 1164
Query: 168 LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTI 227
+ + T QK+R++IA L+ P ++ LDE T+ LD++S + L +++GRT
Sbjct: 1165 VGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTC 1223
Query: 228 ICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
I H+ S Q D + ++ G+ G QL+
Sbjct: 1224 IVIAHRLST--IQNADLIVVIQNGKVKEHGTHQQLL 1257
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 56/235 (23%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHS--------RN 102
L N+ + + +A++GPSG+GKS+LL ++G Y+ +G+I + RN
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT--SGKIYFDEKDVTELPPKDRN 76
Query: 103 IN-AFRRVSCY--------------IQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG 147
+ F+ + Y +++ R + + V +L +D+ N QLSG
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSG 136
Query: 148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207
GQ++R++IA L+ P V+ LDEP ++ D RL + E
Sbjct: 137 GQQQRVAIARALVKEPEVLLLDEPLSN--LDALLRLEVRAE------------------- 175
Query: 208 QSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
L ++ + G T + H A M D++ ++ G+ L G D++
Sbjct: 176 --------LKRLQKELGITTVYVTHD-QAEALAMADRIAVIREGEILQVGTPDEV 221
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 108/221 (48%), Gaps = 20/221 (9%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNG----VTGQILTNGHSRNINA 105
+K + + P Q++ ++G +GAGK++ L ++G R+ GQ +TN + IN
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN- 79
Query: 106 FRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
R + + R+ P LT+ EN+ + N + + G K+ L L PR
Sbjct: 80 -RXGIALVPEGRRIFPELTVYENLXX-----GAYNRKDKE---GIKRDLEWIFSLF--PR 128
Query: 165 VM-FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ 223
+ L + + +++ L+I L + P+++ DEP+ GL S+ ++++ I+Q+
Sbjct: 129 LKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQE 188
Query: 224 GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
G TI+ + Q + ++ Y+L GQ + +G +L++
Sbjct: 189 GTTILL-VEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 14/211 (6%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINA--FRRVSCYIQQD 116
PS + A++GPSG+GKS++L +L + +G I +GH R +N R + Q+
Sbjct: 399 PSGSVTALVGPSGSGKSTVLSLLLRLY-DPASGTISLDGHDIRQLNPVWLRSKIGTVSQE 457
Query: 117 DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMF---LDEPTT 173
L EN+ G D+ + + ++ + ++ A+ I N F + E
Sbjct: 458 PILFSCSIAENIA--YGADDPSSVTAEEIQ--RVAEVANAVAFIRNFPQGFNTVVGEKGV 513
Query: 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQ 233
QK+R++IA L+ NP+++ LDE T+ LD+++ + L + GRT++ H
Sbjct: 514 LLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVIAHH 572
Query: 234 PSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
S + + V +L G+ G ++L++
Sbjct: 573 LST--IKNANMVAVLDQGKITEYGKHEELLS 601
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 115/242 (47%), Gaps = 22/242 (9%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
+++F+++T+T + L+N+ + P+ + +A++G SG+GKS++ +++ +
Sbjct: 341 DLEFRNVTFT------YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394
Query: 88 NGVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQ 144
G IL +GH + + R + Q+ L + V + + ++ Q
Sbjct: 395 ID-EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN----DTVANNIAYARTEEYSREQ 449
Query: 145 LSGGQKKRLSIALELIN---NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201
+ + R++ A++ IN N + E Q++R++IA L+ + ++ LDE
Sbjct: 450 IE--EAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 507
Query: 202 TTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261
T+ LD++S L + Q+ RT + H+ S + D++ ++ G + +G +
Sbjct: 508 TSALDTESERAIQAALDEL-QKNRTSLVIAHRLST--IEQADEIVVVEDGIIVERGTHSE 564
Query: 262 LV 263
L+
Sbjct: 565 LL 566
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 35/228 (15%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR--NINAFRRVSCYIQQDDR 118
+ + +GPSG GKS+LL +++G + +T L G R + R + Q
Sbjct: 28 EGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85
Query: 119 LQPLLTIENVMSLLGLDESQNTRSSQLSGGQK----KRLSIALELINNPRVMFLDEPTTS 174
L P L++ MS GL +L+G +K +R++ E++ LD +
Sbjct: 86 LYPHLSVAENMSF-GL---------KLAGAKKEVINQRVNQVAEVLQ--LAHLLDRKPKA 133
Query: 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC-IKLLKMISQQGRTIICTIHQ 233
Q++R++I L+ P V LD+P + LD+ Q I++ ++ + GRT+I H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 234 PSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPAD 281
+ D++ +L G+ ++ V P YH PAD
Sbjct: 194 -QVEAMTLADKIVVLDAGR-------------VAQVGKPLELYHYPAD 227
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 100/235 (42%), Gaps = 58/235 (24%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-------R 101
K L+N+ + + + G +G+GKS+LL +++G +G +L +G R
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL-IEPTSGDVLYDGERKKGYEIRR 78
Query: 102 NI--------------NAFRRVSCYIQQ--DDRLQPLLTIENVMSLLGLD-ESQNTRSSQ 144
NI F V+ ++ DR P+ ++ M +GLD +S R
Sbjct: 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVKKAMEFVGLDFDSFKDRVPF 137
Query: 145 -LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203
LSGG+K+R++I A +++ P ++ LDEP
Sbjct: 138 FLSGGEKRRVAI------------------------------ASVIVHEPDILILDEPLV 167
Query: 204 GLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258
GLD + + +++++ G+T+I H T+ D+V +L G+ ++ G
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHD-IETVINHVDRVVVLEKGKKVFDGT 221
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 100/235 (42%), Gaps = 58/235 (24%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-------R 101
K L+N+ + + + G +G+GKS+LL +++G +G +L +G R
Sbjct: 22 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL-IEPTSGDVLYDGERKKGYEIRR 80
Query: 102 NI--------------NAFRRVSCYIQQ--DDRLQPLLTIENVMSLLGLD-ESQNTRSSQ 144
NI F V+ ++ DR P+ ++ M +GLD +S R
Sbjct: 81 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVKKAMEFVGLDFDSFKDRVPF 139
Query: 145 -LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203
LSGG+K+R++I A +++ P ++ LDEP
Sbjct: 140 FLSGGEKRRVAI------------------------------ASVIVHEPDILILDEPLV 169
Query: 204 GLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258
GLD + + +++++ G+T+I H T+ D+V +L G+ ++ G
Sbjct: 170 GLDREGKTDLLRIVEKWKTLGKTVILISHD-IETVINHVDRVVVLEKGKKVFDGT 223
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 118/250 (47%), Gaps = 36/250 (14%)
Query: 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85
R EI+FK++ ++ K++P VLK++ Q +A++GP+G+GK++++++L +
Sbjct: 352 RGEIEFKNVWFSYD-----KKKP--VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404
Query: 86 RSNGVTGQILTNGHSRNINAFRRVSCY-----IQQDDRLQPLLTIENVM-SLLGLDESQN 139
GQIL +G +I +R S + QD L EN+ G + +
Sbjct: 405 YDVD-RGQILVDGI--DIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEI 461
Query: 140 TRSSQLSGGQK--KRLSIALELINNPRVMFLDEPTTSNPND----QKKRLSIALELINNP 193
+++L+ K L E + T N D Q++ L+I + NP
Sbjct: 462 KEAAKLTHSDHFIKHLPEGYETV-----------LTDNGEDLSQGQRQLLAITRAFLANP 510
Query: 194 RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253
+++ LDE T+ +D+++ + I+ +G+T I H+ + + D + +L G+
Sbjct: 511 KILILDEATSNVDTKT-EKSIQAAMWKLMEGKTSIIIAHRLNT--IKNADLIIVLRDGEI 567
Query: 254 LYQGATDQLV 263
+ G D+L+
Sbjct: 568 VEMGKHDELI 577
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 102/247 (41%), Gaps = 59/247 (23%)
Query: 44 FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY------------RSNGVT 91
FK+ L N+ + + I+GPSGAGK++ + +++G R
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 92 GQILTNGHSR-------------NINAFRRVSCYIQ--QDDRLQPLLTIENVMSLLGLDE 136
G+++ R N+ AF ++ + + + + +E V +L +
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 137 SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVM 196
N +LSGGQ++R+++A L + +P ++
Sbjct: 133 VLNHFPRELSGGQQQRVALARAL------------------------------VKDPSLL 162
Query: 197 FLDEPTTGLDSQSCSQCIKLLKMI-SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255
LDEP + LD++ L+K + S+ G T++ H P A +F + D+V +L G+ +
Sbjct: 163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQ 221
Query: 256 QGATDQL 262
G + L
Sbjct: 222 VGKPEDL 228
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 30/163 (18%)
Query: 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG------HSRNI 103
++LK + + ++I+G SG+GKS+LL +L G G++ G + + +
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 104 NAFR-RVSCYIQQDDRLQPLLT-IENV---------------------MSLLGLDESQNT 140
+ R R ++ Q L P LT +ENV +S LGL + +
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSR 136
Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183
+ +LSGG+++R++IA L N P ++F DEPT + + KR+
Sbjct: 137 KPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRV 179
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 97/214 (45%), Gaps = 20/214 (9%)
Query: 67 IMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSCYIQQDDRLQPLLTI 125
++GP+GAGKS L++++G G++ NG + RR ++ QD L P L++
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSV 87
Query: 126 ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185
++ GL + + ++L IA LD +++R+++
Sbjct: 88 YRNIAY-GLRNVERVERDRRVREMAEKLGIA---------HLLDRKPARLSGGERQRVAL 137
Query: 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV 245
A L+ PR++ LDEP + +D ++ ++ L+ + ++ I + + D+V
Sbjct: 138 ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEV 197
Query: 246 YLLSGGQCLYQGATDQL--------VNYLSSVNL 271
++ G+ + +G +L +LS+ NL
Sbjct: 198 AVMLNGRIVEKGKLKELFSAKNGEVAEFLSARNL 231
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 102/247 (41%), Gaps = 59/247 (23%)
Query: 44 FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY------------RSNGVT 91
FK+ L N+ + + I+GPSGAGK++ + +++G R
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 92 GQILTNGHSR-------------NINAFRRVSCYI--QQDDRLQPLLTIENVMSLLGLDE 136
G+++ R N+ AF ++ + + + + +E V +L +
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 137 SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVM 196
N +LSG Q++R+++A L+ +P ++ LDEP ++
Sbjct: 133 VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN---------------------- 170
Query: 197 FLDEPTTGLDSQSCSQCIKLLKMI-SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255
LD++ L+K + S+ G T++ H P A +F + D+V +L G+ +
Sbjct: 171 --------LDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQ 221
Query: 256 QGATDQL 262
G + L
Sbjct: 222 VGKPEDL 228
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 106/216 (49%), Gaps = 24/216 (11%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQI-LTNGHSRNINAFRRVSCYIQQDDRLQ 120
+ +A++GPSG GK++ L +L+G Y+ +G+I + +I R + Q+ L
Sbjct: 30 EFVALLGPSGCGKTTTLLMLAGIYKPT--SGEIYFDDVLVNDIPPKYREVGMVFQNYALY 87
Query: 121 PLLTI-ENVMSLLGLDESQNTRSSQLSGGQ--KKRLSIALEL-INNPRVMFLDEPTTSNP 176
P +T+ EN+ L R+ ++S + K+ + IA +L I+N LD T
Sbjct: 88 PHMTVFENIAFPL--------RARRISKDEVEKRVVEIARKLLIDN----LLDRKPTQLS 135
Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPS 235
Q++R+++A L+ P+V+ DEP + LD+ +K + Q+ G T + H
Sbjct: 136 GGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD-Q 194
Query: 236 ATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNL 271
A M ++ + + G+ + G D++ Y S N+
Sbjct: 195 AEAMTMASRIAVFNQGKLVQYGTPDEV--YDSPKNM 228
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 111/244 (45%), Gaps = 25/244 (10%)
Query: 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86
+ I+F D+ ++ KQ LK++ PS A++G +G+GKS++ +L YR
Sbjct: 16 VNIEFSDVNFSYP-----KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL--YR 68
Query: 87 SNGVTGQILTNG---HSRNINAFRRVSCYIQQDDRLQPLLTIENVM--SLLGLDES--QN 139
G I G + N N+ R + + QD L N++ L DE +
Sbjct: 69 FYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKA 128
Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD 199
T+S+QL +E + + +++R++IA L+ +P+++ D
Sbjct: 129 TKSAQLYD--------FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFD 180
Query: 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259
E T+ LDS++ K ++ + ++ RT+I H+ S + + LL+ G+ + +G
Sbjct: 181 EATSSLDSKTEYLFQKAVEDL-RKNRTLIIIAHRLST--ISSAESIILLNKGKIVEKGTH 237
Query: 260 DQLV 263
L+
Sbjct: 238 KDLL 241
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 88/218 (40%), Gaps = 61/218 (27%)
Query: 42 LGFKQEPKDVL-KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-----------YRSNG 89
LGF + ++ L + L ++A++G +G GKS+LLD+L G Y+S G
Sbjct: 10 LGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIG 69
Query: 90 VTGQILTN------------GHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDES 137
Q ++ G S +IN F + + Q + L L
Sbjct: 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQ--------VAMQALDYLNLTHL 121
Query: 138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMF 197
+ LSGGQ++ + IA + + +++ LDEPT+ AL+L N V+
Sbjct: 122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTS------------ALDLANQDIVLS 169
Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235
L L+ + Q T++ T HQP+
Sbjct: 170 L-----------------LIDLAQSQNMTVVFTTHQPN 190
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
Q++R+SIA L P V+ DEPT+ LD + + +++++ ++++G+T++ H+
Sbjct: 158 QQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE-MGFA 216
Query: 239 FQMFDQVYLLSGGQCLYQGATDQL 262
+ V L G+ +G +Q+
Sbjct: 217 RHVSSHVIFLHQGKIEEEGDPEQV 240
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 38/161 (23%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDR-- 118
+ + ++GPSG GK++ L +++G GQI + A ++ DR
Sbjct: 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPS-RGQIYIGD---KLVADPEKGIFVPPKDRDI 83
Query: 119 --------LQPLLTI----------------------ENVMSLLGLDESQNTRSSQLSGG 148
L P +T+ V LLGL E N + +LSGG
Sbjct: 84 AMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGG 143
Query: 149 QKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189
Q++R+++ ++ P+V +DEP ++ D K R+ + EL
Sbjct: 144 QRQRVALGRAIVRKPQVFLMDEPLSN--LDAKLRVRMRAEL 182
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 38/171 (22%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVS 110
+K+L + + ++GPSG GK++ L ++G GQI N+ A
Sbjct: 21 AVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGL-EEPTRGQIYIED---NLVADPEKG 76
Query: 111 CYIQQDDR----------LQPLLTI----------------------ENVMSLLGLDESQ 138
++ +R L P T+ V LGL E
Sbjct: 77 VFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELL 136
Query: 139 NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189
N + +LSGGQ++R+++ +I P+V DEP ++ D K R+ EL
Sbjct: 137 NRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSN--LDAKLRVKXRAEL 185
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 48/191 (25%)
Query: 25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDV--- 81
+ +E ++ + T V +G+ F +P L+A++G +G+GKS+L+++
Sbjct: 345 ENVEFRYFENTDPVLSGVNFSVKP-------------GSLVAVLGETGSGKSTLMNLIPR 391
Query: 82 -----------------------LSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDR 118
L G+ S +L +G + + R DD
Sbjct: 392 LIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDA---TDDE 448
Query: 119 LQPLLTIENVMS-LLGLDESQNTRSSQ----LSGGQKKRLSIALELINNPRVMFLDEPTT 173
+ I + ++ L E ++R + SGGQK+RLSIA L+ P+V+ LD+ T+
Sbjct: 449 IVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTS 508
Query: 174 S-NPNDQKKRL 183
S +P +K+ L
Sbjct: 509 SVDPITEKRIL 519
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
QK+RLSIA L+ P+V+ LD+ T+ +D + + + LK ++ T I T P+A L
Sbjct: 484 QKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALL 543
Query: 239 FQMFDQVYLLSGGQCLYQGATDQLVNY 265
D++ +L G+ G +L+ +
Sbjct: 544 ---ADKILVLHEGKVAGFGTHKELLEH 567
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 57/183 (31%)
Query: 52 LKNLCGRF-------------PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG 98
L+NL RF + + ++GPSG GK++ L +++G T G
Sbjct: 15 LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-------TEG 67
Query: 99 HSRNINAFRRVSCYIQQDDR----------LQPLLTI-ENVM------------------ 129
I R Y+ DR + P +T+ EN+
Sbjct: 68 R---IYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR 124
Query: 130 ---SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA 186
LL ++E N +QLSGGQ++R+++A ++ P V+ +DEP ++ D K R+++
Sbjct: 125 WAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN--LDAKLRVAMR 182
Query: 187 LEL 189
E+
Sbjct: 183 AEI 185
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 45/177 (25%)
Query: 52 LKNLCGRF-------------PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG 98
L+NL RF + + ++GPSG GK++ L +++G G+I
Sbjct: 14 LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL-EEPTEGRIYFG- 71
Query: 99 HSRNINAF----RRVSCYIQQDDRLQPLLTI-ENVM---------------------SLL 132
R++ R +S Q + P +T+ EN+ LL
Sbjct: 72 -DRDVTYLPPKDRNISMVFQSY-AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL 129
Query: 133 GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189
++E N +QLSGGQ++R+++A ++ P V+ +DEP ++ D K R+++ E+
Sbjct: 130 QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN--LDAKLRVAMRAEI 184
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 98/218 (44%), Gaps = 24/218 (11%)
Query: 67 IMGPSGAGKSSLLDVLSGYRSNGVTGQI------LTNGHSRNINAFRRVSCYIQQDDRLQ 120
I+GP+G+GKS+L++V++G+ G++ +TN + + V + Q L+
Sbjct: 38 IIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITNKEPAELYHYGIVRTF-QTPQPLK 95
Query: 121 PLLTIENVMSLLGLDESQNTRSSQLSG--------GQKKRLSIALELINNPRVMFL-DEP 171
+ +EN+ L+G N S L+ +++ + A +++ ++ L D
Sbjct: 96 EMTVLENL--LIG---EINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 150
Query: 172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTI 231
Q K + I L+ NP+++ +DEP G+ + + +G T +
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIE 210
Query: 232 HQPSATLFQMFDQVYLLSGGQCLYQG-ATDQLVNYLSS 268
H+ L D +Y++ GQ + +G +++ N LS
Sbjct: 211 HRLDIVL-NYIDHLYVMFNGQIIAEGRGEEEIKNVLSD 247
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 36/167 (21%)
Query: 42 LGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS------------------ 83
+G ++ K +LK + + + G +GAGK++LL++L+
Sbjct: 27 IGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPG 86
Query: 84 --GYRSNGVTGQILTNGHS---------RNIN-----AFRRVSCYIQQDDRLQPLLTIEN 127
GY + V I HS R I+ AF+ + Y DD ++
Sbjct: 87 KVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN--EAHQ 144
Query: 128 VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
++ L+G LS G+K+R+ IA L P+V+ LDEP
Sbjct: 145 LLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAG 191
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 36/140 (25%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--------HSRNIN-------A 105
+++ ++GPSG+GK+++L +++G G + G RN+
Sbjct: 40 EGEMVGLLGPSGSGKTTILRLIAGL-ERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYAL 98
Query: 106 FRRVSCY--------------IQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK 151
F+ ++ Y + D R++ LL + L+ N +LSGGQ++
Sbjct: 99 FQHMTVYDNVSFGLREKRVPKDEMDARVRELL------RFMRLESYANRFPHELSGGQQQ 152
Query: 152 RLSIALELINNPRVMFLDEP 171
R+++A L P+V+ DEP
Sbjct: 153 RVALARALAPRPQVLLFDEP 172
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 117/258 (45%), Gaps = 41/258 (15%)
Query: 44 FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---S 100
F+ P VL ++ +++ I+G SG GK++LL L+G+ +G+I +G S
Sbjct: 14 FQNTP--VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-SGEISLSGKTIFS 70
Query: 101 RNIN--AFRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIAL 157
+N N R Y+ Q+ L P LT+ N+ LG + R++Q +++R+ L
Sbjct: 71 KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLG---NGKGRTAQ----ERQRIEAML 123
Query: 158 ELINNPRVMFLDEPTTSNPND----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC 213
EL + E P++ Q++R ++A L +P ++ LDEP + LD Q Q
Sbjct: 124 ELTG------ISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI 177
Query: 214 IK-LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLP 272
+ ++ + G++ + H L Q D++ ++ G+ L + +L
Sbjct: 178 REDMIAALRANGKSAVFVSHDREEAL-QYADRIAVMKQGRILQTASPHEL---------- 226
Query: 273 CPKYHNPADFVIELASGE 290
Y PAD L GE
Sbjct: 227 ---YRQPADLDAALFIGE 241
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 22/217 (10%)
Query: 67 IMGPSGAGKSSLLDVLSGYRSNGVTGQI------LTNGHSRNINAFRRVSCYIQQDDRLQ 120
I+GP+G+GKS+L++V++G+ G++ +TN + + V + Q L+
Sbjct: 38 IIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITNKEPAELYHYGIVRTF-QTPQPLK 95
Query: 121 PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP-RVM-FL------DEPT 172
+ +EN++ + E S S KK + E++ +++ FL D
Sbjct: 96 EMTVLENLL----IGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151
Query: 173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH 232
Q K + I L+ NP+++ +DEP G+ + + +G T + H
Sbjct: 152 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEH 211
Query: 233 QPSATLFQMFDQVYLLSGGQCLYQG-ATDQLVNYLSS 268
+ L D +Y++ GQ + +G +++ N LS
Sbjct: 212 RLDIVL-NYIDHLYVMFNGQIIAEGRGEEEIKNVLSD 247
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 98/218 (44%), Gaps = 24/218 (11%)
Query: 67 IMGPSGAGKSSLLDVLSGYRSNGVTGQI------LTNGHSRNINAFRRVSCYIQQDDRLQ 120
I+GP+G+GKS+L++V++G+ G++ +TN + + V + Q L+
Sbjct: 38 IIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITNKEPAELYHYGIVRTF-QTPQPLK 95
Query: 121 PLLTIENVMSLLGLDESQNTRSSQLSG--------GQKKRLSIALELINNPRVMFL-DEP 171
+ +EN+ L+G N S L+ +++ + A +++ ++ L D
Sbjct: 96 EMTVLENL--LIG---EINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 150
Query: 172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTI 231
Q K + I L+ NP+++ +D+P G+ + + +G T +
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIE 210
Query: 232 HQPSATLFQMFDQVYLLSGGQCLYQG-ATDQLVNYLSS 268
H+ L D +Y++ GQ + +G +++ N LS
Sbjct: 211 HRLDIVL-NYIDHLYVMFNGQIIAEGRGEEEIKNVLSD 247
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 112/257 (43%), Gaps = 27/257 (10%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKD-VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
++F+D+++ + P VL+ L ++ A++GP+G+GKS++ +L Y+
Sbjct: 15 VQFQDVSFA------YPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 68
Query: 87 SNGVTGQILTNGHSRNINAFR---RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSS 143
G GQ+L +G R R + Q+ ++ EN+ L +Q
Sbjct: 69 PTG--GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGL----TQKPTME 122
Query: 144 QLSGGQKKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
+++ K S A I+ + +DE + Q++ +++A LI P V+ LD+
Sbjct: 123 EITAAAVK--SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDD 180
Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
T+ LD+ S Q +LL ++ + I Q +L + D + L GG G
Sbjct: 181 ATSALDANSQLQVEQLLYESPERYSRSVLLITQ-HLSLVEQADHILFLEGGAIREGGTHQ 239
Query: 261 QLVN----YLSSVNLPC 273
QL+ Y + V P
Sbjct: 240 QLMEKKGCYWAMVQAPA 256
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 20/216 (9%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSG-YRSNG--VTGQILTNGHS---------RNINAFRR 108
N + AI+G S +GKS++++ ++ NG ++G++L G R I ++
Sbjct: 33 ENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIR-WKE 91
Query: 109 VSCYIQQDDR-LQPLL-TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM 166
++ Q + L P + IE+ + + + S + +K + L NP +
Sbjct: 92 IALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRL----NPEAV 147
Query: 167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRT 226
P + K+R+ IAL L+ +P V+ LDEPT+ LD + + I+LLK + + +
Sbjct: 148 LNSYPLQLS-GGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKI 206
Query: 227 IICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
+ + A ++ D+V ++ GG + +T Q+
Sbjct: 207 TLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQI 242
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 87/187 (46%), Gaps = 35/187 (18%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DV 81
I+F+++ ++ + G ++ L+++ Q +A++GPSGAGKS++L D+
Sbjct: 54 IEFENVHFSYADG-------RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI 106
Query: 82 LSG----------------YRSN-GVTGQ---ILTNGHSRNINAFRRVSCYIQQDDRLQP 121
SG RS+ GV Q + + + NI R + + + Q
Sbjct: 107 SSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQA 166
Query: 122 LLTIENVMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK 180
+ +M+ G R +LSGG+K+R++IA ++ P ++ LDE T++ +
Sbjct: 167 AGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNE 226
Query: 181 KRLSIAL 187
+ + +L
Sbjct: 227 RAIQASL 233
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 80/179 (44%), Gaps = 42/179 (23%)
Query: 29 IKFKDLTYTVSTGLGFKQEPK-DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
+KF+D+++ + P VL+ L ++ A++GP+G+GKS++ +L Y+
Sbjct: 17 VKFQDVSFA------YPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 87 SNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLL-----------------TIENVM 129
G G++L +G + + + +PLL T+E +
Sbjct: 71 PTG--GKVLLDGEPLVQYDHHYLHTQVAAVGQ-EPLLFGRSFRENIAYGLTRTPTMEEIT 127
Query: 130 SLL--------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
++ G D +QLSGGQ++ +++A LI PR++ LD+ T++
Sbjct: 128 AVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSA 186
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 79/179 (44%), Gaps = 42/179 (23%)
Query: 29 IKFKDLTYTVSTGLGFKQEPK-DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
+KF+D+++ + P VL+ L ++ A++GP+G+GKS++ +L Y+
Sbjct: 17 VKFQDVSFA------YPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 87 SNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLL-----------------TIENVM 129
G G++L +G + + + +PLL T+E +
Sbjct: 71 PTG--GKVLLDGEPLVQYDHHYLHTQVAAVGQ-EPLLFGRSFRENIAYGLTRTPTMEEIT 127
Query: 130 SLL--------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
++ G D +QLSGGQ++ +++A LI PR++ LD T++
Sbjct: 128 AVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSA 186
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 34/176 (19%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGH-----SRNIN 104
+LK + P ++ A+MGP+GAGKS+L +L+G V G+IL +G S +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 105 AFRRVSCYIQQDDRLQPLLTIEN-------------------------VMSLLGLDESQN 139
A + + Q + P +TI N + LL DES
Sbjct: 78 ARKGLFLAFQYPVEV-PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL 136
Query: 140 TR--SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNP 193
+R + SGG+KKR I L+ P LDE + D K ++ + + P
Sbjct: 137 SRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGP 192
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 90/221 (40%), Gaps = 60/221 (27%)
Query: 64 LIAIMGPSGAGKSSLLDVLSG-------------------YRSNGVTG--QILTNGHSRN 102
++ I+GP+G GKS+ + +L+G +R N + + L NG R
Sbjct: 49 VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRP 108
Query: 103 INAFRRVSC--------YIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS 154
+ + V I+ + +E V+ L L+ LSGG+ +R++
Sbjct: 109 VVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVA 168
Query: 155 IALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI 214
IA L+ N F DEP++ D ++RL+ A
Sbjct: 169 IAAALLRNATFYFFDEPSSY--LDIRQRLNAA---------------------------- 198
Query: 215 KLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255
+ ++ +S++G++++ H A L + D ++++ G +Y
Sbjct: 199 RAIRRLSEEGKSVLVVEHD-LAVLDYLSDIIHVVYGEPGVY 238
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 69/138 (50%), Gaps = 7/138 (5%)
Query: 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYR--SNGVTGQILTNGHS-RNINAFRRVSCY- 112
G ++I I+GP+G GK++ + L+G + G LT + + I A + Y
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYE 366
Query: 113 -IQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLD 169
+ + D +L ++ LG+ + + ++LSGG+ +R++IA L+ + + LD
Sbjct: 367 LLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD 426
Query: 170 EPTTSNPNDQKKRLSIAL 187
EP+ +Q+ +S A+
Sbjct: 427 EPSAYLDVEQRLAVSRAI 444
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 24/209 (11%)
Query: 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDR 118
P L+A++G G GKSSLL L + V G + G Y+ Q
Sbjct: 28 IPEGALVAVVGQVGCGKSSLLSALLA-EMDKVEGHVAIKGSV----------AYVPQQAW 76
Query: 119 LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
+Q EN++ L+E Q L LE++ + + E +
Sbjct: 77 IQNDSLRENILFGCQLEEPYYRSVIQACA-----LLPDLEILPSGDRTEIGEKGVNLSGG 131
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG----RTIICTIHQP 234
QK+R+S+A + +N + D+P + +D+ + +I +G +T I H
Sbjct: 132 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE--NVIGPKGMLKNKTRILVTH-- 187
Query: 235 SATLFQMFDQVYLLSGGQCLYQGATDQLV 263
S + D + ++SGG+ G+ +L+
Sbjct: 188 SMSYLPQVDVIIVMSGGKISEMGSYQELL 216
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 166 MFLDEPTTSNPNDQKKRLSIALELINNPR---VMFLDEPTTGLDSQSCSQCIKLLKMISQ 222
+ L +P T + +R+ +A EL + R V LDEPTTGL + + L +
Sbjct: 722 LRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD 781
Query: 223 QGRTIICTIHQPSATLFQMFDQVYLLS------GGQCLYQGATDQLVNYLSSVNLP 272
G T+I H+ + D V + GG+ + QG ++ SV P
Sbjct: 782 AGNTVIAVEHK--MQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAP 835
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 125 IENVMSLLGLDES--QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKR 182
IE S+LGLD ++R LSGGQK +L +A P ++ LDEPT D
Sbjct: 880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGA 939
Query: 183 LSIALE 188
LS AL+
Sbjct: 940 LSKALK 945
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 29/132 (21%)
Query: 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQD- 116
R + I GP+G GKS+L+ ++ NG T R + Y++ D
Sbjct: 457 RLKRARRYGICGPNGCGKSTLMRAIA----NGQVDGFPTQEECRTV--------YVEHDI 504
Query: 117 DRLQPLLTIENVMSLLGLDESQNTRS----------------SQLSGGQKKRLSIALELI 160
D ++ + + G+ + + S LSGG K +L++A ++
Sbjct: 505 DGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVL 564
Query: 161 NNPRVMFLDEPT 172
N ++ LDEPT
Sbjct: 565 RNADILLLDEPT 576
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 20/20 (100%)
Query: 65 IAIMGPSGAGKSSLLDVLSG 84
IA++GP+GAGKS+L++VL+G
Sbjct: 702 IAVIGPNGAGKSTLINVLTG 721
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
QK +L +A P ++ LDEPT LD S K LK +G II T H T
Sbjct: 906 QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIIT-HSAEFTK 962
Query: 239 FQMFDQVYLLSGGQCLYQG 257
+ ++V+ + G+ G
Sbjct: 963 -NLTEEVWAVKDGRMTPSG 980
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYR--SNGVTGQILTNGHS-RNINAFRRVSCY- 112
G ++I I+GP+G GK++ + +L+G + G LT + + I A + Y
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYE 436
Query: 113 -IQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLD 169
+ + D +L ++ LG+ + + LSGG+ +R++IA L+ + + LD
Sbjct: 437 LLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 496
Query: 170 EPTTSNPNDQKKRLSIAL 187
EP+ +Q+ +S A+
Sbjct: 497 EPSAYLDVEQRLAVSRAI 514
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 39/202 (19%), Positives = 90/202 (44%), Gaps = 22/202 (10%)
Query: 64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN------INAFR--RVSCYIQ- 114
++ I+GP+G GK++ + +L+G Q++ N N I AFR + Y +
Sbjct: 119 VVGIVGPNGTGKTTAVKILAG--------QLIPNLCEDNDSWDNVIRAFRGNELQNYFER 170
Query: 115 -QDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
++ ++P++ + V L ++ + +L + + LD
Sbjct: 171 LKNGEIRPVVKPQYVDLL---PKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELH 227
Query: 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQ 233
+ +R++IA L+ F DEP++ LD + + ++++ ++ +G+ ++ H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 234 PSATLFQMFDQVYLLSGGQCLY 255
A L + D ++++ G +Y
Sbjct: 288 -LAVLDYLSDVIHVVYGEPGVY 308
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 36/188 (19%)
Query: 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT---------- 96
E K +L+ L ++ AIMGP+G+GKS+L L+G VTG +
Sbjct: 12 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS 71
Query: 97 -------------------NGHSRNI---NAFRRVSCYIQQD--DRLQPLLTIENVMSLL 132
G S A V Y Q+ DR +E ++LL
Sbjct: 72 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALL 131
Query: 133 GLDESQNTRSSQL--SGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI 190
+ E TRS + SGG+KKR I + P + LDE + D K ++ + +
Sbjct: 132 KMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL 191
Query: 191 NNPRVMFL 198
+ + F+
Sbjct: 192 RDGKRSFI 199
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYR--SNGVTGQILTNGHS-RNINAFRRVSCY- 112
G ++I I+GP+G GK++ + +L+G + G LT + + I A + Y
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYE 422
Query: 113 -IQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLD 169
+ + D +L ++ LG+ + + LSGG+ +R++IA L+ + + LD
Sbjct: 423 LLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 482
Query: 170 EPTTSNPNDQKKRLSIAL 187
EP+ +Q+ +S A+
Sbjct: 483 EPSAYLDVEQRLAVSRAI 500
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 39/202 (19%), Positives = 90/202 (44%), Gaps = 22/202 (10%)
Query: 64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN------INAFR--RVSCYIQ- 114
++ I+GP+G GK++ + +L+G Q++ N N I AFR + Y +
Sbjct: 105 VVGIVGPNGTGKTTAVKILAG--------QLIPNLCEDNDSWDNVIRAFRGNELQNYFER 156
Query: 115 -QDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
++ ++P++ + V L ++ + +L + + LD
Sbjct: 157 LKNGEIRPVVKPQYVDLL---PKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELH 213
Query: 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQ 233
+ +R++IA L+ F DEP++ LD + + ++++ ++ +G+ ++ H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 234 PSATLFQMFDQVYLLSGGQCLY 255
A L + D ++++ G +Y
Sbjct: 274 -LAVLDYLSDVIHVVYGEPGVY 294
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 36/188 (19%)
Query: 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT---------- 96
E K +L+ L ++ AIMGP+G+GKS+L L+G VTG +
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS 90
Query: 97 -------------------NGHSRNI---NAFRRVSCYIQQD--DRLQPLLTIENVMSLL 132
G S A V Y Q+ DR +E ++LL
Sbjct: 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALL 150
Query: 133 GLDESQNTRSSQL--SGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI 190
+ E TRS + SGG+KKR I + P + LDE + D K ++ + +
Sbjct: 151 KMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL 210
Query: 191 NNPRVMFL 198
+ + F+
Sbjct: 211 RDGKRSFI 218
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 29/142 (20%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--------YRSNG-----------VT 91
VLK++ + QL+A+ G +GAGK+SLL ++ G + +G +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 82
Query: 92 GQILTN--GHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ 149
G I N G S + +R V Q ++ + +N++ L E T LSGGQ
Sbjct: 83 GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV----LGEGGIT----LSGGQ 134
Query: 150 KKRLSIALELINNPRVMFLDEP 171
+ R+S+A + + + LD P
Sbjct: 135 RARISLARAVYKDADLYLLDSP 156
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 166 MFLDEPTTSNPNDQKKRLSIALEL--INNPRVMF-LDEPTTGLDSQSCSQCIKLLKMISQ 222
M L +P T+ + +R+ +A EL +N R ++ LDEPTTGL ++ + +L +
Sbjct: 535 MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD 594
Query: 223 QGRTIICTIH 232
G T++ H
Sbjct: 595 NGDTVLVIEH 604
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 114/321 (35%), Gaps = 81/321 (25%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSL-------------LDVLSGYRSNGVTGQILTNG 98
LKN+ P +L+ + G SG+GKSSL ++ LS Y Q L
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYAR-----QFLGQM 88
Query: 99 HSRNINAFRRVSCYIQQDDRL---QPLLTIENVMSLLGLDESQNTRSSQLSGGQ------ 149
+++A +S I D + P T+ V + R +L GG+
Sbjct: 89 EKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVT 148
Query: 150 -----------------KKRLSIALELINN--PRVMFLDE------------PTTSNPND 178
+K IA ++ R+ FL T S
Sbjct: 149 AMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEA 208
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
Q+ RL+ + + LDEP+ GL + + I LK + G T+I H
Sbjct: 209 QRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT-- 266
Query: 239 FQMFDQVYLLS--------GGQCLYQGATDQLVN--------YLSS---VNLPCPKYHNP 279
M YL+ GG+ + G ++++N YLS + +P +
Sbjct: 267 --MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIPAERRRPD 324
Query: 280 ADFVIELASGEYGVDNINAMV 300
++ + + E+ + N++ +
Sbjct: 325 GRWLEVVGAREHNLKNVSVKI 345
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLD 80
LKN+ + P +A+ G SG+GKS+L++
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 366
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 30/143 (20%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--------RSNG-----------VT 91
VLK++ + QL+A+ G +GAGK+SLL ++ G + +G +
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 94
Query: 92 GQILTN---GHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG 148
G I N G S + +R V Q ++ + +N++ L E T LSGG
Sbjct: 95 GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV----LGEGGIT----LSGG 146
Query: 149 QKKRLSIALELINNPRVMFLDEP 171
Q+ R+S+A + + + LD P
Sbjct: 147 QRARISLARAVYKDADLYLLDSP 169
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 30/143 (20%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--------YRSNG-----------VT 91
VLK++ + QL+A+ G +GAGK+SLL ++ G + +G +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 82
Query: 92 GQILTN---GHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG 148
G I N G S + +R V Q ++ + +N++ L E T LSGG
Sbjct: 83 GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV----LGEGGIT----LSGG 134
Query: 149 QKKRLSIALELINNPRVMFLDEP 171
Q+ R+S+A + + + LD P
Sbjct: 135 QRARISLARAVYKDADLYLLDSP 157
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 125 IENVMSLLGLDES--QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKR 182
IE S LGLD ++R LSGGQK +L +A P ++ LDEPT D
Sbjct: 880 IEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGA 939
Query: 183 LSIALE 188
LS AL+
Sbjct: 940 LSKALK 945
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 13/124 (10%)
Query: 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDD 117
R + I GP+G GKS+L ++ NG T R + +
Sbjct: 457 RLKRARRYGICGPNGCGKSTLXRAIA----NGQVDGFPTQEECRTVYVEHDIDGTHSDTS 512
Query: 118 RLQPLL--------TIENVMSLLGL-DESQNTRSSQLSGGQKKRLSIALELINNPRVMFL 168
L + I++ + G DE S LSGG K +L++A ++ N ++ L
Sbjct: 513 VLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLL 572
Query: 169 DEPT 172
DEPT
Sbjct: 573 DEPT 576
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 20/20 (100%)
Query: 65 IAIMGPSGAGKSSLLDVLSG 84
IA++GP+GAGKS+L++VL+G
Sbjct: 702 IAVIGPNGAGKSTLINVLTG 721
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
QK +L +A P ++ LDEPT LD S K LK +G II T H T
Sbjct: 906 QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIIT-HSAEFTK 962
Query: 239 FQMFDQVYLLSGGQCLYQG 257
+ ++V+ + G+ G
Sbjct: 963 -NLTEEVWAVKDGRXTPSG 980
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108
K VL+ + ++ GP+G GK++LL +S Y + G+I+ NG I +
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL-KPLKGEIIYNGVP--ITKVKG 78
Query: 109 VSCYIQQDDRLQPLLTIEN----VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
++ ++ + +++E+ V SL G+ ++N + ALE +
Sbjct: 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN------------EIMDALESV---E 123
Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK-LLKMISQQ 223
V+ L + +R+ +A L+ N + LD+P +D S + +K +L+++ ++
Sbjct: 124 VLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK 183
Query: 224 GRTIICTIHQPS 235
G II + + S
Sbjct: 184 GIVIISSREELS 195
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 125 IENVMSLLGLDES--QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKR 182
IE S LGLD ++R LSGGQK +L +A P ++ LDEPT D
Sbjct: 874 IEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGA 933
Query: 183 LSIALE 188
LS AL+
Sbjct: 934 LSKALK 939
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 13/124 (10%)
Query: 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDD 117
R + I GP+G GKS+L ++ NG T R + +
Sbjct: 451 RLKRARRYGICGPNGCGKSTLXRAIA----NGQVDGFPTQEECRTVYVEHDIDGTHSDTS 506
Query: 118 RLQPLL--------TIENVMSLLGL-DESQNTRSSQLSGGQKKRLSIALELINNPRVMFL 168
L + I++ + G DE S LSGG K +L++A ++ N ++ L
Sbjct: 507 VLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLL 566
Query: 169 DEPT 172
DEPT
Sbjct: 567 DEPT 570
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 20/20 (100%)
Query: 65 IAIMGPSGAGKSSLLDVLSG 84
IA++GP+GAGKS+L++VL+G
Sbjct: 696 IAVIGPNGAGKSTLINVLTG 715
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
QK +L +A P ++ LDEPT LD S K LK +G II T H T
Sbjct: 900 QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIIT-HSAEFTK 956
Query: 239 FQMFDQVYLLSGGQCLYQG 257
+ ++V+ + G+ G
Sbjct: 957 -NLTEEVWAVKDGRXTPSG 974
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 166 MFLDEPTTSNPNDQKKRLSIALEL--INNPRVMF-LDEPTTGLDSQSCSQCIKLLKMISQ 222
M L +P T+ + +R+ +A EL +N R ++ LDEPTTGL ++ + +L +
Sbjct: 837 MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD 896
Query: 223 QGRTIICTIH 232
G T++ H
Sbjct: 897 NGDTVLVIEH 906
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 23/122 (18%)
Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS-------- 249
LDEP+ GL + + I LK + G T+I H M YL+
Sbjct: 530 LDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT----MLAADYLIDIGPGAGIH 585
Query: 250 GGQCLYQGATDQLVN--------YLSS---VNLPCPKYHNPADFVIELASGEYGVDNINA 298
GG+ + G ++++N YLS + +P + ++ + + E+ + N++
Sbjct: 586 GGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIPAERRRPDGRWLEVVGAREHNLKNVSV 645
Query: 299 MV 300
+
Sbjct: 646 KI 647
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 99/216 (45%), Gaps = 22/216 (10%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVS 110
VLK++ + QL+A+ G +GAGK+SLL ++ G G+I +G R+S
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSG---------RIS 102
Query: 111 CYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
+ Q + P EN+++ + DE + RS + ++ +S E N + L E
Sbjct: 103 -FCSQFSWIMPGTIKENIIAGVSYDEYR-YRSVIKACQLEEDISKFAEKDN----IVLGE 156
Query: 171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK--LLKMISQQGRTII 228
+ Q+ R+S+A + + + LD P LD + + + + K+++ + R ++
Sbjct: 157 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 216
Query: 229 CTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
+ + + D++ +L G + G +L N
Sbjct: 217 TSKMEH----LKKADKILILHEGSSYFYGTFSELQN 248
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 29/142 (20%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--------RSNG-----------VT 91
VLK++ + QL+A+ G +GAGK+SLL ++ G + +G +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP 112
Query: 92 GQILTN--GHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ 149
G I N G S + +R V Q ++ + +N++ L E T LSGGQ
Sbjct: 113 GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV----LGEGGIT----LSGGQ 164
Query: 150 KKRLSIALELINNPRVMFLDEP 171
+ R+S+A + + + LD P
Sbjct: 165 RARISLARAVYKDADLYLLDSP 186
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 29/142 (20%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--------RSNG-----------VT 91
VLK++ + QL+A+ G +GAGK+SLL ++ G + +G +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP 112
Query: 92 GQILTN--GHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ 149
G I N G S + +R V Q ++ + +N++ L E T LSGGQ
Sbjct: 113 GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV----LGEGGIT----LSGGQ 164
Query: 150 KKRLSIALELINNPRVMFLDEP 171
+ R+S+A + + + LD P
Sbjct: 165 RARISLARAVYKDADLYLLDSP 186
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 78/179 (43%), Gaps = 42/179 (23%)
Query: 29 IKFKDLTYTVSTGLGFKQEPK-DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
+KF+D+++ + P VL+ L ++ A++GP+G+GKS++ +L Y+
Sbjct: 17 VKFQDVSFA------YPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 87 SNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLL-----------------TIENVM 129
G G++L +G + + + +PLL T+E +
Sbjct: 71 PTG--GKVLLDGEPLVQYDHHYLHTQVAAVGQ-EPLLFGRSFRENIAYGLTRTPTMEEIT 127
Query: 130 SLL--------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
++ G D +QL+ GQ++ +++A LI PR++ LD T++
Sbjct: 128 AVAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSA 186
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 29/163 (17%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+ K++ T+S G G+++ L+N+ ++I I+GP+G+GK++LL +SG
Sbjct: 2 IQLKNVGITLS-GKGYERFS---LENINLEVNGEKVI-ILGPNGSGKTTLLRAISGLLP- 55
Query: 89 GVTGQILTNG-HSRNINAFRRVSCYIQQDDRLQPLLTIENVM----SLLGLD-------- 135
+G I NG R I + R S + + + +T+ +++ L GLD
Sbjct: 56 -YSGNIFINGMEVRKIRNYIRYSTNLPEAYEIG--VTVNDIVYLYEELKGLDRDLFLEML 112
Query: 136 -------ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
E + +LS GQ + +L L + P ++ LDEP
Sbjct: 113 KALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEP 155
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 33/144 (22%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--YRSNGVT----------------- 91
VLKN+ +++AI G +G+GK+SLL ++ G S G+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 92 GQILTN--GHSRNINAFRRV--SCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG 147
G I N G S + ++ V +C +QQD + +N + L E T LSG
Sbjct: 113 GTIKENIIGVSYDEYRYKSVVKACQLQQD--ITKFAEQDNTV----LGEGGVT----LSG 162
Query: 148 GQKKRLSIALELINNPRVMFLDEP 171
GQ+ R+S+A + + + LD P
Sbjct: 163 GQRARISLARAVYKDADLYLLDSP 186
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 168 LDEPTTSNPNDQKKRLSIALEL--INNPRVMF-LDEPTTGLDSQSCSQCIKLLKMISQQG 224
L +P T+ + +R+ +A EL +N R ++ LDEPTTGL ++ + +L + G
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 225 RTIICTIH 232
T++ H
Sbjct: 899 DTVLVIEH 906
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 34/145 (23%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--YRSNGV---TGQI----------- 94
VLKN+ +++AI G +G+GK+SLL ++ G S G+ +G++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 95 ------LTNGHSRNINAFRRV--SCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLS 146
+ +G S + ++ V +C +QQD + +N + L E T LS
Sbjct: 113 GTIKENIISGVSYDEYRYKSVVKACQLQQD--ITKFAEQDNTV----LGEGGVT----LS 162
Query: 147 GGQKKRLSIALELINNPRVMFLDEP 171
GGQ+ R+S+A + + + LD P
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSP 187
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 34/145 (23%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--YRSNGVT----------------- 91
VLKN+ +++AI G +G+GK+SLL ++ G S G+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 92 GQILTN---GHSRNINAFRRV--SCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLS 146
G I N G S + ++ V +C +QQD + +N + L E T LS
Sbjct: 113 GTIKENIIFGVSYDEYRYKSVVKACQLQQD--ITKFAEQDNTV----LGEGGVT----LS 162
Query: 147 GGQKKRLSIALELINNPRVMFLDEP 171
GGQ+ R+S+A + + + LD P
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSP 187
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 34/145 (23%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--YRSNGVT----------------- 91
VLKN+ +++AI G +G+GK+SLL ++ G S G+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 92 GQILTN---GHSRNINAFRRV--SCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLS 146
G I N G S + ++ V +C +QQD + +N + L E T LS
Sbjct: 113 GTIKENIIFGVSYDEYRYKSVVKACQLQQD--ITKFAEQDNTV----LGEGGVT----LS 162
Query: 147 GGQKKRLSIALELINNPRVMFLDEP 171
GGQ+ R+S+A + + + LD P
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSP 187
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 34/145 (23%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--YRSNGV---TGQI----------- 94
VLKN+ +++AI G +G+GK+SLL ++ G S G+ +G++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 95 ------LTNGHSRNINAFRRV--SCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLS 146
+ G S + ++ V +C +QQD + +N + L E T LS
Sbjct: 113 GTIKENIIRGVSYDEYRYKSVVKACQLQQD--ITKFAEQDNTV----LGEGGVT----LS 162
Query: 147 GGQKKRLSIALELINNPRVMFLDEP 171
GGQ+ R+S+A + + + LD P
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSP 187
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified
Dna
Length = 916
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSL 78
LKN+ R P N+L+ I G SG+GKSSL
Sbjct: 14 LKNITVRIPKNRLVVITGVSGSGKSSL 40
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 168 LDEPTTSNPNDQKKRLSIALELI--NNPRVMF-LDEPTTGLDSQSCSQCIKLLKMISQQG 224
L +P T+ + +R+ +A EL + R ++ LDEPT GL + + +++L + +G
Sbjct: 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858
Query: 225 RTIICTIH 232
T+I H
Sbjct: 859 NTVIVIEH 866
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 195 VMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV------YLL 248
+ LDEPT GL + + IK LK + G T+I H + + D +
Sbjct: 487 IYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH--DEEVIRNADHIIDIGPGGGT 544
Query: 249 SGGQCLYQGATDQLVN 264
+GG+ ++QG D+L+
Sbjct: 545 NGGRVVFQGTVDELLK 560
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQD 116
G ++I I+GP+G GK++ +L G +T + + I +++ + D
Sbjct: 289 GEAKEGEIIGILGPNGIGKTTFARILVGE----ITADEGSVTPEKQILSYKPQRIFPNYD 344
Query: 117 DRLQPLLT-------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP 163
+Q L E V L L + + LSGG+ ++L IA L
Sbjct: 345 GTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEA 404
Query: 164 RVMFLDEPTT 173
+ LD+P++
Sbjct: 405 DLYVLDQPSS 414
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 36/180 (20%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSGY------RSNGVTG--QILTNGHSRNI-NAFRRVSC 111
+N ++ ++G +G GK+++L +L+G N G ++L + I N F+ +
Sbjct: 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYS 83
Query: 112 ----------YIQQDDR-----LQPLLTI-------ENVMSLLGLDESQNTRSSQLSGGQ 149
Y++ + + +LT + V LL + N ++ LSGG
Sbjct: 84 NELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGG 143
Query: 150 KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA---LELINNPRVMFLDEPTTGLD 206
+RL +A L+ V D+P S+ D ++R+++A EL+ N V+ +D LD
Sbjct: 144 LQRLLVAASLLREADVYIFDQP--SSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLD 201
>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
Length = 430
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 59 FPSNQLIAIMGPSGAGKSSLLDVLS---GYRSNGVTGQILTN 97
F + +I+GP+G+GKS+++D +S G RSN + IL +
Sbjct: 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILKD 64
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 171 PTTSNPNDQKKRLSIALELINNPRVMF-LDEPTTGLDSQSCSQCIKLLKMISQQGRTIIC 229
PT S Q+ +L+ L+ + R ++ LDEPTTGL + + ++ + +G T+I
Sbjct: 862 PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921
Query: 230 TIH 232
H
Sbjct: 922 IEH 924
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 98/216 (45%), Gaps = 22/216 (10%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVS 110
VLK++ + QL+A+ G +GAGK+SLL ++ G G+I +G R+S
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSG---------RIS 102
Query: 111 CYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
+ Q + P EN++ + DE + RS + ++ +S E N + L E
Sbjct: 103 -FCSQFSWIMPGTIKENIIFGVSYDEYR-YRSVIKACQLEEDISKFAEKDN----IVLGE 156
Query: 171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK--LLKMISQQGRTII 228
+ Q+ ++S+A + + + LD P LD + + + + K+++ + R ++
Sbjct: 157 GGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 216
Query: 229 CTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
+ + + D++ +L G + G +L N
Sbjct: 217 TSKMEH----LKKADKILILHEGSSYFYGTFSELQN 248
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 73/161 (45%), Gaps = 25/161 (15%)
Query: 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN---------------GHSR 101
G F ++++ +MG +G GK++L+ +L+G GQ + G R
Sbjct: 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPD-EGQDIPKLNVSMKPQKIAPKFPGTVR 431
Query: 102 NINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN 161
+ F+++ L P +V+ L +D+ + LSGG+ +R++I L L
Sbjct: 432 QL-FFKKIRGQF-----LNPQFQT-DVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGI 484
Query: 162 NPRVMFLDEPTTSNPNDQKKRLSIALE--LINNPRVMFLDE 200
+ +DEP+ ++Q+ S + +++N + F+ E
Sbjct: 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVE 525
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184
++ + +L L+ +LSGG+ +R +I + + V DEP++ D K+RL+
Sbjct: 202 VKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSY--LDVKQRLN 259
Query: 185 IA 186
A
Sbjct: 260 AA 261
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 33/144 (22%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--------RSNG-----------VT 91
VLK++ + QL+A+ G +GAGK+SLL ++ G + +G +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 92 GQILTN--GHSRNINAFRRV--SCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG 147
G I N G S + +R V +C +++D + +N++ L E T LS
Sbjct: 113 GTIKENIIGVSYDEYRYRSVIKACQLEED--ISKFAEKDNIV----LGEGGIT----LSE 162
Query: 148 GQKKRLSIALELINNPRVMFLDEP 171
GQ+ ++S+A + + + LD P
Sbjct: 163 GQQAKISLARAVYKDADLYLLDSP 186
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202
+L G QKK S +NNP + + T +P D KR LEL N +V+ + +PT
Sbjct: 29 ERLCGFQKKTYSK----MNNPAIKRIGNHITKSPED--KREYRGLELANGIKVLLISDPT 82
Query: 203 TGLDSQSCSQCI 214
T S + I
Sbjct: 83 TDKSSAALDVHI 94
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 182 RLSIALELINNPRV--MFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP 234
RL+IA LI N RV + LDEPT LD ++ ++ + + + II T H+
Sbjct: 294 RLAIANALIGN-RVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE 347
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 160 INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS 209
+NNP + +++ +P D KR LEL N +V+ + +PTT S +
Sbjct: 1 MNNPAIQRIEDHIVKSPED--KREYRGLELANGIKVLLISDPTTDKSSAA 48
>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System
Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At
1.95 A Resolution
Length = 208
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS 83
VL+ L R P QL+A+ G G+GKS+L + L+
Sbjct: 11 VLERLDPRQPGRQLVALSGAPGSGKSTLSNPLA 43
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 160 INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS 209
+NNP + +++ +P D KR LEL N +V+ + +PTT S +
Sbjct: 42 MNNPAIQRIEDHIVKSPED--KREYRGLELANGIKVLLISDPTTDKSSAA 89
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 160 INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS 209
+NNP + +++ +P D KR LEL N +V+ + +PTT S +
Sbjct: 42 MNNPAIQRIEDHIVKSPED--KREYRGLELANGIKVLLISDPTTDKSSAA 89
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 160 INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI 214
+NNP + + T +P D KR LEL N +V+ + +PTT S + I
Sbjct: 13 MNNPAIKRIGNHITKSPED--KREYRGLELANGIKVLLISDPTTDKSSAALDVHI 65
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 160 INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI 214
+NNP + + T +P D KR LEL N +V+ + +PTT S + I
Sbjct: 13 MNNPAIKRIGNHITKSPED--KREYRGLELANGIKVLLISDPTTDKSSAALDVHI 65
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 160 INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI 214
+NNP + + T +P D KR LEL N +V+ + +PTT S + I
Sbjct: 13 MNNPAIKRIGNHITKSPED--KREYRGLELANGIKVLLISDPTTDKSSAALDVHI 65
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 160 INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS 209
+NNP + + T +P D KR LEL N +V+ + +PTT S +
Sbjct: 13 MNNPAIKRIGNHITKSPED--KREYRGLELANGIKVLLISDPTTDKSSAA 60
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 160 INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS 209
+NNP + + T +P D KR LEL N +V+ + +PTT S +
Sbjct: 13 MNNPAIKRIGNHITKSPED--KREYRGLELANGIKVLLISDPTTDKSSAA 60
>pdb|1VBG|A Chain A, Pyruvate Phosphate Dikinase From Maize
pdb|1VBH|A Chain A, Pyruvate Phosphate Dikinase With Bound Mg-Pep From Maize
Length = 876
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 446 LFTTIVYPLTGQPMELTRFTMFNCTSLLVVF--IAQSVGYMVGAVFNVVNGTFVGPVLVV 503
+F I+ PL G P EL VF + +++GY VG + + V +
Sbjct: 704 VFPEIMVPLVGTPQELGHQVTLIRQVAEKVFANVGKTIGYKVGTMIEIPRAALVADEIAE 763
Query: 504 PMMMFS---------GFGVSINDIPKYM 522
FS FG S +D+ K++
Sbjct: 764 QAEFFSFGTNDLTQMTFGYSRDDVGKFI 791
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 160 INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI 214
+NNP + + T +P D KR LEL N +V+ + +PTT S + I
Sbjct: 13 MNNPAIKRIGNHITKSPED--KREYRGLELANGIKVLLISDPTTDKSSAALDVHI 65
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS 83
LKN+ F S + + GP+GAGKSSL + +S
Sbjct: 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS 83
LKN+ F S + + GP+GAGKSSL + +S
Sbjct: 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 20/22 (90%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVL 82
S+++ AI+GP+G+GKS+++D +
Sbjct: 23 SDRVTAIVGPNGSGKSNIIDAI 44
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 161 NNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI 214
NNP + + T +P D KR LEL N +V+ + +PTT S + I
Sbjct: 1 NNPAIKRIGNHITKSPED--KREYRGLELANGIKVLLISDPTTDKSSAALDVHI 52
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND
STATE
Length = 382
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS 83
LKN+ F S + + GP+GAGKSSL + +S
Sbjct: 31 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,186,805
Number of Sequences: 62578
Number of extensions: 642152
Number of successful extensions: 2027
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1685
Number of HSP's gapped (non-prelim): 273
length of query: 606
length of database: 14,973,337
effective HSP length: 104
effective length of query: 502
effective length of database: 8,465,225
effective search space: 4249542950
effective search space used: 4249542950
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)