Query psy13765
Match_columns 606
No_of_seqs 420 out of 2632
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:54:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061|consensus 100.0 1E-102 3E-107 879.7 56.0 557 20-606 17-612 (613)
2 PLN03211 ABC transporter G-25; 100.0 4E-100 9E-105 867.7 58.5 569 23-601 34-657 (659)
3 TIGR00955 3a01204 The Eye Pigm 100.0 1.1E-99 2E-104 862.6 56.6 576 22-606 11-617 (617)
4 PLN03140 ABC transporter G fam 100.0 1E-94 2.2E-99 877.1 56.9 574 26-606 865-1470(1470)
5 TIGR00956 3a01205 Pleiotropic 100.0 1.4E-94 2.9E-99 878.5 57.6 565 27-606 758-1394(1394)
6 TIGR00956 3a01205 Pleiotropic 100.0 1.8E-93 3.9E-98 868.6 59.9 574 25-602 26-694 (1394)
7 PLN03140 ABC transporter G fam 100.0 1.6E-91 3.5E-96 849.3 56.6 575 25-602 128-789 (1470)
8 KOG0065|consensus 100.0 1.9E-90 4.1E-95 794.8 38.0 564 29-602 788-1383(1391)
9 KOG0065|consensus 100.0 1.5E-80 3.3E-85 713.2 40.6 551 49-602 128-730 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 1.4E-50 3.1E-55 388.7 21.7 208 28-283 2-236 (240)
11 COG1120 FepC ABC-type cobalami 100.0 5.8E-47 1.3E-51 380.1 21.6 223 28-264 2-228 (258)
12 COG1135 AbcC ABC-type metal io 100.0 4.8E-46 1E-50 374.2 20.6 202 28-264 1-231 (339)
13 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 9.9E-46 2.2E-50 369.4 21.7 223 27-264 3-227 (254)
14 COG1125 OpuBA ABC-type proline 100.0 7.3E-46 1.6E-50 362.9 19.8 197 28-264 1-225 (309)
15 COG1131 CcmA ABC-type multidru 100.0 2E-45 4.3E-50 381.7 23.3 223 28-269 4-231 (293)
16 COG3638 ABC-type phosphate/pho 100.0 1.5E-45 3.3E-50 358.2 18.9 226 27-264 2-237 (258)
17 COG1127 Ttg2A ABC-type transpo 100.0 4.2E-45 9.2E-50 356.0 21.6 199 26-264 6-235 (263)
18 COG1136 SalX ABC-type antimicr 100.0 1.6E-44 3.5E-49 355.8 21.4 209 29-253 2-220 (226)
19 COG1116 TauB ABC-type nitrate/ 100.0 3.7E-44 8.1E-49 353.8 21.2 182 28-251 3-207 (248)
20 COG1124 DppF ABC-type dipeptid 100.0 6.3E-44 1.4E-48 349.3 20.4 223 27-264 2-231 (252)
21 COG3842 PotA ABC-type spermidi 100.0 6.3E-44 1.4E-48 372.8 19.4 232 27-284 4-238 (352)
22 PRK13537 nodulation ABC transp 100.0 3.9E-43 8.6E-48 367.2 24.1 218 27-264 6-227 (306)
23 COG3839 MalK ABC-type sugar tr 100.0 1.7E-43 3.8E-48 367.6 21.0 198 27-264 2-223 (338)
24 COG1118 CysA ABC-type sulfate/ 100.0 1.8E-43 3.8E-48 354.8 17.9 221 27-264 1-227 (345)
25 cd03261 ABC_Org_Solvent_Resist 100.0 8.3E-43 1.8E-47 351.3 22.9 216 29-263 1-225 (235)
26 TIGR02314 ABC_MetN D-methionin 100.0 9.3E-43 2E-47 368.4 24.1 220 29-263 2-229 (343)
27 COG4555 NatA ABC-type Na+ tran 100.0 2.2E-43 4.9E-48 334.7 16.4 214 29-289 2-239 (245)
28 PRK13536 nodulation factor exp 100.0 2.9E-42 6.3E-47 364.9 26.3 219 26-264 39-261 (340)
29 COG1122 CbiO ABC-type cobalt t 100.0 1.3E-42 2.9E-47 347.7 20.9 219 28-264 3-228 (235)
30 COG1117 PstB ABC-type phosphat 100.0 6.2E-43 1.4E-47 334.6 16.9 234 26-283 5-248 (253)
31 PRK11650 ugpC glycerol-3-phosp 100.0 3.5E-42 7.5E-47 366.5 24.1 219 28-264 3-224 (356)
32 TIGR01288 nodI ATP-binding ABC 100.0 5.4E-42 1.2E-46 358.4 24.4 218 27-264 3-224 (303)
33 TIGR03265 PhnT2 putative 2-ami 100.0 4.3E-42 9.3E-47 365.4 24.0 218 28-264 4-224 (353)
34 COG0411 LivG ABC-type branched 100.0 1.1E-42 2.5E-47 340.7 18.0 227 27-264 3-239 (250)
35 COG2884 FtsE Predicted ATPase 100.0 1.8E-42 3.9E-47 325.9 17.3 192 28-258 1-220 (223)
36 cd03265 ABC_DrrA DrrA is the A 100.0 7.3E-42 1.6E-46 341.0 22.5 215 29-262 1-219 (220)
37 TIGR03258 PhnT 2-aminoethylpho 100.0 8.4E-42 1.8E-46 363.9 24.0 218 28-264 5-228 (362)
38 PRK11432 fbpC ferric transport 100.0 1E-41 2.2E-46 362.1 24.4 218 28-264 6-226 (351)
39 cd03259 ABC_Carb_Solutes_like 100.0 8E-42 1.7E-46 339.0 21.0 209 29-257 1-213 (213)
40 PRK10851 sulfate/thiosulfate t 100.0 1.6E-41 3.4E-46 361.1 24.4 223 27-264 1-226 (353)
41 cd03218 ABC_YhbG The ABC trans 100.0 1.2E-41 2.7E-46 341.9 22.3 215 29-263 1-221 (232)
42 PRK13643 cbiO cobalt transport 100.0 2.4E-41 5.2E-46 351.0 25.1 241 29-283 2-255 (288)
43 PRK09452 potA putrescine/sperm 100.0 1.9E-41 4.1E-46 362.5 24.7 219 27-264 13-234 (375)
44 COG3840 ThiQ ABC-type thiamine 100.0 5.5E-42 1.2E-46 320.3 17.6 216 29-264 2-219 (231)
45 cd03296 ABC_CysA_sulfate_impor 100.0 2.1E-41 4.6E-46 342.0 23.3 219 28-263 2-225 (239)
46 TIGR00960 3a0501s02 Type II (G 100.0 1.3E-41 2.9E-46 338.1 21.2 207 29-253 2-216 (216)
47 PRK11153 metN DL-methionine tr 100.0 2.1E-41 4.6E-46 359.4 24.0 219 29-263 2-229 (343)
48 PRK09536 btuD corrinoid ABC tr 100.0 2.4E-41 5.1E-46 364.0 24.4 222 28-263 3-227 (402)
49 cd03256 ABC_PhnC_transporter A 100.0 2.3E-41 4.9E-46 341.7 22.6 222 29-263 1-233 (241)
50 cd03268 ABC_BcrA_bacitracin_re 100.0 1.8E-41 3.8E-46 335.3 21.3 206 29-257 1-208 (208)
51 cd03258 ABC_MetN_methionine_tr 100.0 2.5E-41 5.3E-46 340.0 22.3 220 29-263 2-229 (233)
52 TIGR03522 GldA_ABC_ATP gliding 100.0 3.6E-41 7.8E-46 351.8 24.0 216 28-264 2-221 (301)
53 PRK11000 maltose/maltodextrin 100.0 3.4E-41 7.5E-46 360.9 24.2 218 28-264 3-223 (369)
54 PRK09493 glnQ glutamine ABC tr 100.0 4.2E-41 9E-46 340.0 23.3 217 29-263 2-224 (240)
55 TIGR01188 drrA daunorubicin re 100.0 2.1E-41 4.5E-46 353.8 21.8 207 47-265 4-214 (302)
56 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.9E-41 6.4E-46 336.7 21.9 213 29-260 1-219 (220)
57 cd03269 ABC_putative_ATPase Th 100.0 2.7E-41 5.9E-46 334.5 21.4 208 29-257 1-210 (210)
58 cd03219 ABC_Mj1267_LivG_branch 100.0 3.4E-41 7.3E-46 339.6 22.3 221 29-263 1-231 (236)
59 PRK11264 putative amino-acid A 100.0 4.4E-41 9.5E-46 341.8 23.3 217 28-263 3-232 (250)
60 COG1137 YhbG ABC-type (unclass 100.0 1.1E-42 2.4E-47 329.6 10.7 220 27-264 3-228 (243)
61 cd03263 ABC_subfamily_A The AB 100.0 3.3E-41 7.2E-46 336.1 21.5 215 29-262 1-219 (220)
62 cd03224 ABC_TM1139_LivF_branch 100.0 3.7E-41 8.1E-46 336.0 21.6 216 29-263 1-220 (222)
63 PRK13637 cbiO cobalt transport 100.0 8.6E-41 1.9E-45 346.7 25.1 232 28-274 2-247 (287)
64 cd03260 ABC_PstB_phosphate_tra 100.0 2.7E-41 5.9E-46 338.4 20.5 212 29-261 1-226 (227)
65 PRK11607 potG putrescine trans 100.0 9E-41 2E-45 357.8 25.8 219 27-264 18-239 (377)
66 cd03301 ABC_MalK_N The N-termi 100.0 4E-41 8.6E-46 333.9 21.3 209 29-257 1-213 (213)
67 cd03226 ABC_cobalt_CbiO_domain 100.0 3E-41 6.6E-46 333.0 20.3 204 30-254 1-205 (205)
68 PRK11831 putative ABC transpor 100.0 7.7E-41 1.7E-45 344.0 23.9 217 28-263 7-232 (269)
69 cd03266 ABC_NatA_sodium_export 100.0 4.5E-41 9.7E-46 334.7 21.5 213 29-257 2-218 (218)
70 TIGR02315 ABC_phnC phosphonate 100.0 4.8E-41 1E-45 339.9 21.9 221 29-262 2-233 (243)
71 PRK13647 cbiO cobalt transport 100.0 1.2E-40 2.6E-45 343.4 25.0 228 28-273 4-238 (274)
72 PRK11124 artP arginine transpo 100.0 8.1E-41 1.8E-45 338.3 23.2 216 28-262 2-228 (242)
73 PRK13631 cbiO cobalt transport 100.0 1.6E-40 3.4E-45 349.3 26.1 233 27-275 20-279 (320)
74 PRK13634 cbiO cobalt transport 100.0 1E-40 2.2E-45 346.6 24.3 232 28-275 2-249 (290)
75 PRK13651 cobalt transporter AT 100.0 1.3E-40 2.8E-45 347.8 24.9 223 28-263 2-253 (305)
76 cd03295 ABC_OpuCA_Osmoprotecti 100.0 9E-41 2E-45 338.0 22.7 216 29-263 1-224 (242)
77 PRK11614 livF leucine/isoleuci 100.0 9.1E-41 2E-45 336.9 22.5 216 28-263 5-225 (237)
78 PRK13650 cbiO cobalt transport 100.0 1.5E-40 3.3E-45 343.5 24.3 227 28-272 4-240 (279)
79 PRK10619 histidine/lysine/argi 100.0 1.8E-40 4E-45 338.8 24.0 217 28-263 5-240 (257)
80 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 7.1E-41 1.5E-45 333.2 20.2 208 29-253 1-218 (218)
81 PRK10895 lipopolysaccharide AB 100.0 1.7E-40 3.7E-45 335.7 22.8 217 28-263 3-225 (241)
82 PRK13646 cbiO cobalt transport 100.0 2E-40 4.4E-45 343.8 23.6 221 28-264 2-235 (286)
83 TIGR00972 3a0107s01c2 phosphat 100.0 2.3E-40 5E-45 336.1 23.5 217 29-263 2-231 (247)
84 PRK15079 oligopeptide ABC tran 100.0 2.4E-40 5.3E-45 349.2 24.6 229 27-264 7-251 (331)
85 PRK11247 ssuB aliphatic sulfon 100.0 2E-40 4.3E-45 338.5 23.2 207 27-260 11-219 (257)
86 TIGR02673 FtsE cell division A 100.0 1.6E-40 3.4E-45 329.8 21.6 205 29-252 2-214 (214)
87 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.1E-40 2.3E-45 342.9 20.8 205 47-263 35-249 (269)
88 PRK13636 cbiO cobalt transport 100.0 3.9E-40 8.5E-45 341.1 25.0 228 28-274 5-244 (283)
89 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4E-40 8.6E-45 332.1 24.2 216 29-264 2-221 (236)
90 PRK11308 dppF dipeptide transp 100.0 3.6E-40 7.8E-45 347.5 24.9 226 28-264 5-244 (327)
91 cd03292 ABC_FtsE_transporter F 100.0 1.7E-40 3.6E-45 329.5 21.0 206 29-253 1-214 (214)
92 PRK13638 cbiO cobalt transport 100.0 3.9E-40 8.3E-45 339.1 24.3 216 29-263 2-224 (271)
93 PRK11231 fecE iron-dicitrate t 100.0 3.3E-40 7.1E-45 336.6 23.6 222 28-263 2-226 (255)
94 cd03262 ABC_HisP_GlnQ_permease 100.0 1.6E-40 3.5E-45 329.3 20.7 206 29-253 1-213 (213)
95 PRK13548 hmuV hemin importer A 100.0 3.7E-40 7.9E-45 336.9 23.9 218 28-263 2-229 (258)
96 TIGR03005 ectoine_ehuA ectoine 100.0 2.8E-40 6E-45 336.5 22.8 217 29-263 1-235 (252)
97 PRK10575 iron-hydroxamate tran 100.0 5.2E-40 1.1E-44 337.1 24.3 223 27-263 10-236 (265)
98 TIGR01186 proV glycine betaine 100.0 2.1E-40 4.6E-45 352.5 22.1 207 47-264 4-219 (363)
99 cd03233 ABC_PDR_domain1 The pl 100.0 4.7E-40 1E-44 324.2 23.0 195 28-257 3-202 (202)
100 PRK13641 cbiO cobalt transport 100.0 4.1E-40 8.8E-45 341.7 23.7 220 28-263 2-233 (287)
101 cd03257 ABC_NikE_OppD_transpor 100.0 3.1E-40 6.6E-45 330.6 21.9 216 29-257 2-228 (228)
102 TIGR03410 urea_trans_UrtE urea 100.0 3E-40 6.6E-45 331.5 21.5 213 29-262 1-219 (230)
103 PRK14250 phosphate ABC transpo 100.0 5E-40 1.1E-44 332.5 23.3 213 27-263 2-220 (241)
104 cd03234 ABCG_White The White s 100.0 5.5E-40 1.2E-44 329.0 23.1 220 28-257 3-226 (226)
105 COG0410 LivF ABC-type branched 100.0 3.9E-40 8.5E-45 320.6 21.1 218 28-264 3-226 (237)
106 PRK13649 cbiO cobalt transport 100.0 8.3E-40 1.8E-44 338.2 24.9 221 27-263 1-233 (280)
107 TIGR03740 galliderm_ABC gallid 100.0 4.5E-40 9.7E-45 328.9 22.0 209 29-261 1-210 (223)
108 PRK10253 iron-enterobactin tra 100.0 5.9E-40 1.3E-44 336.6 23.5 222 27-263 6-232 (265)
109 PRK11300 livG leucine/isoleuci 100.0 6.2E-40 1.3E-44 334.3 23.4 223 28-263 5-242 (255)
110 PRK13644 cbiO cobalt transport 100.0 5.4E-40 1.2E-44 338.6 23.0 215 29-263 2-223 (274)
111 PRK11022 dppD dipeptide transp 100.0 6.2E-40 1.3E-44 345.7 23.9 223 28-264 3-243 (326)
112 cd03264 ABC_drug_resistance_li 100.0 3.6E-40 7.8E-45 326.7 20.8 207 29-257 1-211 (211)
113 PRK09473 oppD oligopeptide tra 100.0 8.3E-40 1.8E-44 345.2 24.8 226 27-264 11-251 (330)
114 COG4559 ABC-type hemin transpo 100.0 3E-40 6.6E-45 315.6 19.1 202 29-264 2-230 (259)
115 PRK13652 cbiO cobalt transport 100.0 8.2E-40 1.8E-44 337.7 23.9 218 28-264 3-227 (277)
116 PRK14247 phosphate ABC transpo 100.0 9.1E-40 2E-44 332.2 23.7 221 28-263 3-233 (250)
117 PRK13639 cbiO cobalt transport 100.0 1.1E-39 2.4E-44 336.5 24.6 226 29-272 2-237 (275)
118 cd03225 ABC_cobalt_CbiO_domain 100.0 3.4E-40 7.3E-45 326.7 20.0 205 30-252 1-211 (211)
119 PRK11629 lolD lipoprotein tran 100.0 8.4E-40 1.8E-44 329.1 23.1 215 28-259 5-229 (233)
120 TIGR01978 sufC FeS assembly AT 100.0 7.7E-40 1.7E-44 331.0 22.9 224 29-263 1-233 (243)
121 PRK13635 cbiO cobalt transport 100.0 1.1E-39 2.4E-44 337.1 24.4 228 28-274 5-242 (279)
122 PRK14268 phosphate ABC transpo 100.0 1.1E-39 2.4E-44 333.3 24.1 219 27-263 11-241 (258)
123 PRK14273 phosphate ABC transpo 100.0 1.1E-39 2.3E-44 332.6 23.8 219 28-263 7-237 (254)
124 PRK10908 cell division protein 100.0 7.7E-40 1.7E-44 326.9 22.2 207 29-254 2-216 (222)
125 PRK13648 cbiO cobalt transport 100.0 1.7E-39 3.7E-44 334.0 25.3 228 28-274 7-244 (269)
126 PRK14267 phosphate ABC transpo 100.0 1.1E-39 2.4E-44 332.2 23.6 220 28-263 4-236 (253)
127 TIGR03873 F420-0_ABC_ATP propo 100.0 1.1E-39 2.4E-44 332.9 23.6 219 29-263 2-225 (256)
128 PRK11248 tauB taurine transpor 100.0 1E-39 2.2E-44 333.1 23.1 210 29-260 2-216 (255)
129 cd03235 ABC_Metallic_Cations A 100.0 4.1E-40 8.9E-45 326.7 19.7 211 30-257 1-213 (213)
130 COG4152 ABC-type uncharacteriz 100.0 1.8E-40 3.8E-45 323.1 16.4 198 28-266 2-221 (300)
131 TIGR02211 LolD_lipo_ex lipopro 100.0 8.5E-40 1.8E-44 326.2 21.7 209 29-254 2-220 (221)
132 TIGR03411 urea_trans_UrtD urea 100.0 1.2E-39 2.6E-44 329.6 23.0 221 28-263 2-230 (242)
133 COG2274 SunT ABC-type bacterio 100.0 8.7E-40 1.9E-44 371.6 24.1 200 26-265 469-697 (709)
134 TIGR02769 nickel_nikE nickel i 100.0 1.3E-39 2.8E-44 334.1 23.1 225 28-263 2-239 (265)
135 PRK14242 phosphate transporter 100.0 1.6E-39 3.5E-44 330.9 23.5 220 26-263 4-236 (253)
136 PRK13633 cobalt transporter AT 100.0 2.1E-39 4.5E-44 335.2 24.5 222 28-264 4-233 (280)
137 PRK11144 modC molybdate transp 100.0 1.5E-39 3.3E-44 346.3 23.6 209 29-264 2-218 (352)
138 cd03213 ABCG_EPDR ABCG transpo 100.0 2.3E-39 4.9E-44 317.3 22.8 191 27-257 2-194 (194)
139 PRK15093 antimicrobial peptide 100.0 2.1E-39 4.5E-44 342.5 24.2 229 28-263 3-247 (330)
140 PRK13632 cbiO cobalt transport 100.0 2E-39 4.4E-44 333.8 23.5 220 26-263 5-230 (271)
141 PRK10070 glycine betaine trans 100.0 1.9E-39 4.2E-44 349.0 23.7 225 28-264 4-254 (400)
142 COG4172 ABC-type uncharacteriz 100.0 1.4E-39 2.9E-44 335.5 21.4 233 27-264 5-516 (534)
143 PRK14245 phosphate ABC transpo 100.0 2.7E-39 5.9E-44 328.8 23.5 219 27-263 2-233 (250)
144 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.7E-39 3.8E-44 321.8 21.4 208 29-257 1-211 (211)
145 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.4E-39 5.3E-44 318.5 22.2 189 29-267 1-196 (200)
146 TIGR03415 ABC_choXWV_ATP choli 100.0 1.8E-39 4E-44 346.9 23.1 224 29-263 1-253 (382)
147 PRK09984 phosphonate/organopho 100.0 2.4E-39 5.3E-44 331.5 23.1 222 28-262 4-240 (262)
148 PRK14241 phosphate transporter 100.0 3.6E-39 7.8E-44 329.5 23.8 220 28-263 4-241 (258)
149 PRK15112 antimicrobial peptide 100.0 2.4E-39 5.2E-44 332.5 22.6 225 28-263 4-238 (267)
150 PRK10744 pstB phosphate transp 100.0 3.5E-39 7.5E-44 330.0 23.6 222 25-263 10-243 (260)
151 PRK10771 thiQ thiamine transpo 100.0 3.8E-39 8.2E-44 324.2 23.5 215 29-264 2-219 (232)
152 COG0444 DppD ABC-type dipeptid 100.0 2E-39 4.2E-44 330.6 21.4 223 29-264 2-243 (316)
153 PRK13645 cbiO cobalt transport 100.0 2.8E-39 6.1E-44 335.7 23.1 221 27-263 5-239 (289)
154 PRK13640 cbiO cobalt transport 100.0 5.4E-39 1.2E-43 332.4 24.8 220 27-264 4-232 (282)
155 PRK13547 hmuV hemin importer A 100.0 3.4E-39 7.4E-44 332.1 23.0 221 29-263 2-243 (272)
156 cd03232 ABC_PDR_domain2 The pl 100.0 3.5E-39 7.6E-44 315.4 21.8 188 28-257 3-192 (192)
157 cd03230 ABC_DR_subfamily_A Thi 100.0 3.3E-39 7.1E-44 310.4 21.2 171 29-253 1-173 (173)
158 PRK14269 phosphate ABC transpo 100.0 4.3E-39 9.3E-44 326.7 23.1 220 28-263 2-229 (246)
159 PRK10418 nikD nickel transport 100.0 5E-39 1.1E-43 327.7 23.7 217 28-263 4-229 (254)
160 cd03300 ABC_PotA_N PotA is an 100.0 4.1E-39 8.9E-44 324.0 22.6 216 29-263 1-219 (232)
161 PRK14256 phosphate ABC transpo 100.0 5.5E-39 1.2E-43 326.9 23.8 220 28-263 4-235 (252)
162 PRK14259 phosphate ABC transpo 100.0 5.1E-39 1.1E-43 330.4 23.6 221 26-264 11-253 (269)
163 PRK14235 phosphate transporter 100.0 6.8E-39 1.5E-43 329.2 24.3 221 27-263 18-250 (267)
164 cd03252 ABCC_Hemolysin The ABC 100.0 4.1E-39 8.9E-44 324.7 22.3 217 29-264 1-225 (237)
165 TIGR02142 modC_ABC molybdenum 100.0 4.1E-39 8.8E-44 343.4 23.2 208 33-264 4-221 (354)
166 TIGR00968 3a0106s01 sulfate AB 100.0 4.7E-39 1E-43 324.7 22.4 215 29-263 1-219 (237)
167 PRK14274 phosphate ABC transpo 100.0 6.6E-39 1.4E-43 327.7 23.7 220 27-263 11-242 (259)
168 PRK11701 phnK phosphonate C-P 100.0 6.8E-39 1.5E-43 327.4 23.7 216 28-263 6-240 (258)
169 COG4181 Predicted ABC-type tra 100.0 1.2E-39 2.7E-44 301.6 16.4 191 28-255 6-226 (228)
170 TIGR01277 thiQ thiamine ABC tr 100.0 5E-39 1.1E-43 319.2 22.0 209 29-258 1-212 (213)
171 PRK14239 phosphate transporter 100.0 7.4E-39 1.6E-43 325.8 23.7 218 28-263 5-235 (252)
172 PRK14248 phosphate ABC transpo 100.0 7.6E-39 1.6E-43 328.9 24.0 220 27-263 20-251 (268)
173 PRK13642 cbiO cobalt transport 100.0 8.3E-39 1.8E-43 330.3 24.2 219 28-263 4-228 (277)
174 PRK14270 phosphate ABC transpo 100.0 8.6E-39 1.9E-43 325.3 23.7 220 27-263 3-234 (251)
175 PRK14272 phosphate ABC transpo 100.0 9.4E-39 2E-43 325.0 23.8 219 27-264 3-236 (252)
176 KOG0058|consensus 100.0 1.8E-39 3.8E-44 357.4 19.8 243 3-264 439-691 (716)
177 cd03299 ABC_ModC_like Archeal 100.0 7.6E-39 1.7E-43 322.7 22.8 214 29-263 1-218 (235)
178 PRK15056 manganese/iron transp 100.0 8.9E-39 1.9E-43 329.2 23.8 220 27-262 5-228 (272)
179 PRK14237 phosphate transporter 100.0 1.1E-38 2.4E-43 327.6 24.3 218 26-263 18-250 (267)
180 PRK10584 putative ABC transpor 100.0 6.9E-39 1.5E-43 321.3 22.1 211 28-255 6-226 (228)
181 PRK15439 autoinducer 2 ABC tra 100.0 9.6E-39 2.1E-43 356.5 24.9 214 28-263 11-228 (510)
182 PRK14240 phosphate transporter 100.0 1.4E-38 3.1E-43 323.4 23.8 219 28-263 3-233 (250)
183 PRK14262 phosphate ABC transpo 100.0 1.4E-38 3E-43 323.5 23.6 220 28-264 3-234 (250)
184 cd03214 ABC_Iron-Siderophores_ 100.0 3.6E-39 7.8E-44 312.1 18.2 176 30-257 1-180 (180)
185 cd03267 ABC_NatA_like Similar 100.0 6.6E-39 1.4E-43 323.4 20.6 201 46-257 31-236 (236)
186 cd03251 ABCC_MsbA MsbA is an e 100.0 1.2E-38 2.7E-43 320.5 22.4 219 29-264 1-225 (234)
187 PRK14253 phosphate ABC transpo 100.0 1.4E-38 3E-43 323.4 22.9 219 28-263 3-232 (249)
188 PRK11174 cysteine/glutathione 100.0 1.3E-38 2.8E-43 361.6 25.1 216 27-264 348-572 (588)
189 PRK14265 phosphate ABC transpo 100.0 2.5E-38 5.3E-43 326.2 24.8 220 26-263 18-257 (274)
190 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1E-38 2.2E-43 322.0 21.5 221 29-265 1-227 (238)
191 PRK14271 phosphate ABC transpo 100.0 2.7E-38 5.9E-43 326.2 24.8 218 27-264 20-251 (276)
192 PRK13549 xylose transporter AT 100.0 9.1E-39 2E-43 356.5 22.9 219 28-262 5-230 (506)
193 cd03229 ABC_Class3 This class 100.0 1.1E-38 2.4E-43 308.1 20.4 172 29-252 1-178 (178)
194 PRK14236 phosphate transporter 100.0 2.6E-38 5.6E-43 325.7 24.3 220 27-263 24-255 (272)
195 cd03254 ABCC_Glucan_exporter_l 100.0 1.4E-38 3.1E-43 319.0 21.8 219 28-264 2-226 (229)
196 PRK14251 phosphate ABC transpo 100.0 2.2E-38 4.8E-43 322.2 23.2 218 28-263 4-234 (251)
197 TIGR02323 CP_lyasePhnK phospho 100.0 2.1E-38 4.7E-43 322.7 23.1 217 28-263 3-237 (253)
198 PRK14254 phosphate ABC transpo 100.0 3.9E-38 8.3E-43 326.5 25.3 218 27-263 38-268 (285)
199 PRK10419 nikE nickel transport 100.0 1.5E-38 3.3E-43 326.7 22.0 226 28-263 3-240 (268)
200 cd03297 ABC_ModC_molybdenum_tr 100.0 1.5E-38 3.3E-43 315.8 21.0 200 33-257 5-214 (214)
201 KOG0055|consensus 100.0 4.4E-37 9.5E-42 355.4 36.2 224 25-264 347-576 (1228)
202 PRK14244 phosphate ABC transpo 100.0 2.3E-38 5E-43 322.2 22.6 221 27-263 4-236 (251)
203 PRK10762 D-ribose transporter 100.0 1.2E-38 2.6E-43 355.1 22.5 219 28-262 4-228 (501)
204 PRK09580 sufC cysteine desulfu 100.0 3.9E-38 8.4E-43 319.7 24.2 230 29-270 2-240 (248)
205 PRK14255 phosphate ABC transpo 100.0 3.6E-38 7.7E-43 320.9 23.9 219 27-263 4-235 (252)
206 PRK14249 phosphate ABC transpo 100.0 3.7E-38 7.9E-43 320.7 23.8 218 28-263 4-234 (251)
207 PRK14258 phosphate ABC transpo 100.0 3.9E-38 8.4E-43 322.5 23.9 220 28-264 7-245 (261)
208 PRK14260 phosphate ABC transpo 100.0 3E-38 6.6E-43 322.9 23.1 216 28-263 7-242 (259)
209 PRK14238 phosphate transporter 100.0 3.5E-38 7.6E-43 324.6 23.4 219 27-263 23-254 (271)
210 PRK09700 D-allose transporter 100.0 1.8E-38 3.9E-43 354.5 22.7 221 28-262 5-232 (510)
211 PRK09544 znuC high-affinity zi 100.0 3.7E-38 8.1E-43 320.8 22.9 201 28-263 4-208 (251)
212 COG4988 CydD ABC-type transpor 100.0 1.7E-38 3.7E-43 343.8 21.3 202 22-264 314-543 (559)
213 COG4175 ProV ABC-type proline/ 100.0 1.2E-38 2.5E-43 320.4 18.5 206 27-264 3-254 (386)
214 TIGR02770 nickel_nikD nickel i 100.0 2.2E-38 4.8E-43 318.3 20.6 203 51-263 1-214 (230)
215 cd03246 ABCC_Protease_Secretio 100.0 2.7E-38 5.9E-43 304.0 20.4 170 29-253 1-173 (173)
216 COG1123 ATPase components of v 100.0 2.3E-38 5E-43 344.0 22.3 226 28-264 5-244 (539)
217 PRK14243 phosphate transporter 100.0 5.4E-38 1.2E-42 322.0 23.8 218 28-263 10-247 (264)
218 PRK14275 phosphate ABC transpo 100.0 6.6E-38 1.4E-42 325.0 24.7 219 27-263 38-269 (286)
219 cd03245 ABCC_bacteriocin_expor 100.0 2.5E-38 5.4E-43 315.4 20.8 207 28-257 2-220 (220)
220 CHL00131 ycf16 sulfate ABC tra 100.0 1.2E-37 2.7E-42 316.8 26.1 224 28-262 7-239 (252)
221 PRK14261 phosphate ABC transpo 100.0 5.7E-38 1.2E-42 319.7 23.4 219 28-263 6-236 (253)
222 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 5.2E-38 1.1E-42 362.5 25.6 215 27-264 450-673 (686)
223 COG1123 ATPase components of v 100.0 2.8E-38 6E-43 343.4 21.7 229 26-264 278-519 (539)
224 TIGR02982 heterocyst_DevA ABC 100.0 4E-38 8.6E-43 314.2 21.0 210 29-253 2-219 (220)
225 TIGR03608 L_ocin_972_ABC putat 100.0 3.2E-38 6.9E-43 311.3 19.9 197 31-248 1-206 (206)
226 KOG0057|consensus 100.0 1.8E-38 3.9E-43 338.8 19.5 207 27-264 350-574 (591)
227 cd03289 ABCC_CFTR2 The CFTR su 100.0 4.4E-38 9.5E-43 323.9 21.5 215 28-264 2-225 (275)
228 cd03253 ABCC_ATM1_transporter 100.0 6.3E-38 1.4E-42 315.8 22.2 215 29-264 1-224 (236)
229 cd03247 ABCC_cytochrome_bd The 100.0 4E-38 8.7E-43 304.1 19.9 176 29-257 1-178 (178)
230 PRK03695 vitamin B12-transport 100.0 3.7E-38 8E-43 320.3 20.6 199 51-263 11-221 (248)
231 PRK13543 cytochrome c biogenes 100.0 7.3E-38 1.6E-42 311.2 22.2 201 27-250 10-212 (214)
232 TIGR01184 ntrCD nitrate transp 100.0 2.6E-38 5.7E-43 317.8 19.2 199 52-262 1-202 (230)
233 PRK10247 putative ABC transpor 100.0 4.9E-38 1.1E-42 314.8 21.0 210 27-259 6-222 (225)
234 cd03231 ABC_CcmA_heme_exporter 100.0 6.3E-38 1.4E-42 308.7 21.3 196 29-248 1-198 (201)
235 cd03215 ABC_Carb_Monos_II This 100.0 8E-38 1.7E-42 303.2 20.9 172 28-253 4-182 (182)
236 PRK11176 lipid transporter ATP 100.0 7.8E-38 1.7E-42 354.7 24.1 219 27-264 340-567 (582)
237 COG4987 CydC ABC-type transpor 100.0 2.4E-38 5.2E-43 337.7 18.5 205 28-264 336-561 (573)
238 COG4598 HisP ABC-type histidin 100.0 5.8E-39 1.3E-43 299.2 12.0 197 27-263 5-240 (256)
239 PRK10790 putative multidrug tr 100.0 1.3E-37 2.7E-42 353.7 25.6 216 27-264 339-563 (592)
240 PRK10261 glutathione transport 100.0 8.1E-38 1.8E-42 356.4 23.9 225 27-263 312-552 (623)
241 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 8.4E-38 1.8E-42 362.2 24.4 216 27-264 476-700 (710)
242 PRK14266 phosphate ABC transpo 100.0 1.4E-37 3.1E-42 316.0 23.0 220 27-263 2-233 (250)
243 COG1132 MdlB ABC-type multidru 100.0 8.4E-38 1.8E-42 353.4 23.5 217 27-264 327-552 (567)
244 PRK13538 cytochrome c biogenes 100.0 1.1E-37 2.3E-42 307.7 21.2 198 29-248 2-202 (204)
245 PRK14263 phosphate ABC transpo 100.0 2.2E-37 4.9E-42 316.9 24.4 221 26-264 6-245 (261)
246 PRK10938 putative molybdenum t 100.0 6.5E-38 1.4E-42 348.4 21.9 210 28-263 3-223 (490)
247 cd03244 ABCC_MRP_domain2 Domai 100.0 1E-37 2.2E-42 311.1 21.0 210 28-258 2-220 (221)
248 cd03288 ABCC_SUR2 The SUR doma 100.0 2.6E-37 5.7E-42 315.6 24.5 221 26-264 17-243 (257)
249 PRK14246 phosphate ABC transpo 100.0 1.7E-37 3.6E-42 317.1 23.0 220 28-264 10-241 (257)
250 TIGR01842 type_I_sec_PrtD type 100.0 1.8E-37 4E-42 349.0 25.4 219 27-264 315-542 (544)
251 cd03216 ABC_Carb_Monos_I This 100.0 1.3E-37 2.8E-42 296.6 20.4 158 29-255 1-162 (163)
252 PRK14252 phosphate ABC transpo 100.0 3.2E-37 7E-42 316.3 24.8 221 25-263 13-248 (265)
253 PRK10982 galactose/methyl gala 100.0 8.7E-38 1.9E-42 347.4 22.2 215 31-262 1-221 (491)
254 PRK11160 cysteine/glutathione 100.0 1.5E-37 3.2E-42 351.6 24.3 217 27-264 337-562 (574)
255 TIGR03375 type_I_sec_LssB type 100.0 1.7E-37 3.6E-42 358.8 25.1 219 27-265 462-689 (694)
256 PRK14257 phosphate ABC transpo 100.0 2.6E-37 5.7E-42 325.9 23.9 221 27-264 79-313 (329)
257 PRK11288 araG L-arabinose tran 100.0 1.6E-37 3.5E-42 346.1 23.5 216 28-259 4-224 (501)
258 TIGR02633 xylG D-xylose ABC tr 100.0 1.5E-37 3.2E-42 346.4 23.0 218 29-261 2-227 (500)
259 TIGR00958 3a01208 Conjugate Tr 100.0 1.8E-37 3.9E-42 358.9 24.4 217 27-264 477-702 (711)
260 PRK15134 microcin C ABC transp 100.0 1.6E-37 3.5E-42 348.2 23.3 224 28-263 5-245 (529)
261 PRK13539 cytochrome c biogenes 100.0 2.2E-37 4.7E-42 306.2 21.4 198 28-250 2-200 (207)
262 PRK10261 glutathione transport 100.0 1.5E-37 3.3E-42 354.1 22.9 224 28-263 12-257 (623)
263 TIGR01189 ccmA heme ABC export 100.0 2.2E-37 4.7E-42 304.0 20.8 195 29-247 1-197 (198)
264 TIGR03269 met_CoM_red_A2 methy 100.0 1.9E-37 4.2E-42 346.9 23.1 218 29-266 1-260 (520)
265 TIGR03269 met_CoM_red_A2 methy 100.0 2.6E-37 5.7E-42 345.9 23.9 221 27-264 278-517 (520)
266 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.9E-37 8.4E-42 304.2 22.3 199 28-259 6-207 (207)
267 TIGR01193 bacteriocin_ABC ABC- 100.0 2.5E-37 5.3E-42 358.1 24.0 216 28-264 473-697 (708)
268 COG4604 CeuD ABC-type enteroch 100.0 9E-39 1.9E-43 302.2 9.8 220 29-264 2-225 (252)
269 cd03248 ABCC_TAP TAP, the Tran 100.0 3.2E-37 7E-42 308.7 21.1 212 26-253 9-226 (226)
270 PRK13549 xylose transporter AT 100.0 1.6E-37 3.5E-42 346.4 20.9 224 28-262 259-492 (506)
271 TIGR01257 rim_protein retinal- 100.0 2.6E-37 5.7E-42 378.8 24.4 222 28-267 1937-2162(2272)
272 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 3E-37 6.5E-42 309.0 20.0 201 29-257 23-224 (224)
273 PRK13540 cytochrome c biogenes 100.0 5.8E-37 1.3E-41 301.5 21.1 194 29-246 2-197 (200)
274 cd03228 ABCC_MRP_Like The MRP 100.0 4.7E-37 1E-41 294.9 19.7 168 29-252 1-171 (171)
275 PRK13546 teichoic acids export 100.0 1.5E-36 3.2E-41 311.1 24.5 217 27-264 3-232 (264)
276 PRK14264 phosphate ABC transpo 100.0 2E-36 4.3E-41 316.6 25.4 226 27-263 44-288 (305)
277 PRK15134 microcin C ABC transp 100.0 3.8E-37 8.2E-42 345.3 21.3 225 28-263 275-514 (529)
278 TIGR01257 rim_protein retinal- 100.0 8.9E-37 1.9E-41 374.1 26.0 222 26-266 926-1151(2272)
279 COG4161 ArtP ABC-type arginine 100.0 2.8E-37 6E-42 283.3 15.7 215 27-260 1-226 (242)
280 TIGR02203 MsbA_lipidA lipid A 100.0 1.1E-36 2.4E-41 344.4 24.3 218 28-264 330-556 (571)
281 PRK13657 cyclic beta-1,2-gluca 100.0 1.7E-36 3.6E-41 344.3 25.3 216 28-264 334-558 (588)
282 TIGR01846 type_I_sec_HlyB type 100.0 1.4E-36 3E-41 351.0 25.1 218 27-264 454-680 (694)
283 PRK09700 D-allose transporter 100.0 6.8E-37 1.5E-41 341.8 21.5 218 27-259 264-493 (510)
284 COG1129 MglA ABC-type sugar tr 100.0 1E-36 2.2E-41 329.2 21.5 218 26-258 6-228 (500)
285 TIGR02633 xylG D-xylose ABC tr 100.0 7.4E-37 1.6E-41 340.7 21.1 223 27-260 256-488 (500)
286 COG4525 TauB ABC-type taurine 100.0 1E-36 2.2E-41 287.8 18.6 198 28-265 3-225 (259)
287 TIGR02324 CP_lyasePhnL phospho 100.0 1.7E-36 3.8E-41 303.0 21.3 208 29-249 2-223 (224)
288 PRK10789 putative multidrug tr 100.0 2.4E-36 5.2E-41 341.5 24.7 217 28-264 313-538 (569)
289 TIGR02204 MsbA_rel ABC transpo 100.0 3.2E-36 6.9E-41 341.1 25.0 223 27-264 336-563 (576)
290 TIGR01192 chvA glucan exporter 100.0 4.1E-36 8.9E-41 340.5 25.1 216 28-264 334-558 (585)
291 COG4148 ModC ABC-type molybdat 100.0 6.1E-37 1.3E-41 303.3 14.3 181 52-264 14-218 (352)
292 COG4618 ArpD ABC-type protease 100.0 3E-36 6.5E-41 319.0 19.9 216 11-267 318-563 (580)
293 cd03223 ABCD_peroxisomal_ALDP 100.0 7.4E-36 1.6E-40 285.4 20.7 163 29-251 1-163 (166)
294 TIGR01166 cbiO cobalt transpor 100.0 3.5E-36 7.6E-41 293.4 18.3 177 48-235 4-188 (190)
295 PRK13545 tagH teichoic acids e 100.0 1E-35 2.2E-40 324.6 23.8 211 28-265 21-233 (549)
296 PRK10762 D-ribose transporter 100.0 3.5E-36 7.6E-41 335.3 20.3 217 27-262 256-482 (501)
297 TIGR03771 anch_rpt_ABC anchore 100.0 5.3E-36 1.2E-40 299.7 19.5 198 57-263 1-200 (223)
298 PRK11288 araG L-arabinose tran 100.0 4.6E-36 9.9E-41 334.4 20.4 217 27-262 256-483 (501)
299 PRK10535 macrolide transporter 100.0 3.5E-35 7.5E-40 336.1 27.8 218 28-262 4-230 (648)
300 PRK10522 multidrug transporter 100.0 1.1E-35 2.3E-40 334.9 22.8 194 27-257 321-531 (547)
301 cd03250 ABCC_MRP_domain1 Domai 100.0 1.3E-35 2.8E-40 292.6 20.4 195 29-252 1-204 (204)
302 PRK15439 autoinducer 2 ABC tra 100.0 5.6E-36 1.2E-40 334.3 19.9 214 28-262 268-490 (510)
303 cd03290 ABCC_SUR1_N The SUR do 100.0 1.3E-35 2.9E-40 295.5 20.3 202 30-252 2-218 (218)
304 PTZ00265 multidrug resistance 100.0 8.9E-36 1.9E-40 364.3 22.9 220 28-264 1165-1452(1466)
305 KOG0055|consensus 100.0 6.9E-36 1.5E-40 345.5 20.5 199 27-264 986-1213(1228)
306 COG1119 ModF ABC-type molybden 100.0 1.1E-35 2.5E-40 291.5 18.3 220 26-258 29-256 (257)
307 cd03291 ABCC_CFTR1 The CFTR su 100.0 6.7E-35 1.5E-39 301.3 25.0 208 26-264 37-247 (282)
308 PRK10938 putative molybdenum t 100.0 1.5E-35 3.3E-40 329.4 20.1 218 27-258 259-486 (490)
309 PRK10982 galactose/methyl gala 100.0 1.6E-35 3.5E-40 329.2 20.3 216 27-260 249-476 (491)
310 PRK13541 cytochrome c biogenes 100.0 3.8E-35 8.3E-40 287.5 20.5 192 29-246 2-193 (195)
311 PLN03232 ABC transporter C fam 100.0 3.6E-35 7.7E-40 361.6 25.2 216 28-264 1234-1458(1495)
312 COG4586 ABC-type uncharacteriz 100.0 7.6E-36 1.6E-40 295.1 14.6 207 28-266 3-248 (325)
313 PLN03130 ABC transporter C fam 100.0 5.8E-35 1.3E-39 360.3 25.6 217 27-264 1236-1461(1622)
314 PRK15064 ABC transporter ATP-b 100.0 5.2E-35 1.1E-39 328.0 22.7 211 29-264 2-242 (530)
315 TIGR01194 cyc_pep_trnsptr cycl 100.0 4.4E-35 9.5E-40 330.2 21.9 200 27-256 336-551 (555)
316 PRK15064 ABC transporter ATP-b 100.0 5.3E-35 1.2E-39 328.0 22.3 203 27-264 318-525 (530)
317 TIGR02857 CydD thiol reductant 100.0 5.4E-35 1.2E-39 327.9 22.0 201 28-248 320-529 (529)
318 COG4608 AppF ABC-type oligopep 100.0 3.1E-35 6.7E-40 294.0 17.8 194 27-264 3-199 (268)
319 COG0396 sufC Cysteine desulfur 100.0 3E-34 6.6E-39 278.4 23.5 234 27-273 2-242 (251)
320 COG3845 ABC-type uncharacteriz 100.0 5.4E-35 1.2E-39 310.0 19.9 216 27-258 3-223 (501)
321 PRK11819 putative ABC transpor 100.0 1.1E-34 2.3E-39 327.1 23.1 213 27-263 5-249 (556)
322 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.5E-34 3.2E-39 293.4 21.4 187 51-261 9-204 (246)
323 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.3E-34 2.9E-39 270.3 18.8 144 29-252 1-144 (144)
324 TIGR00957 MRP_assoc_pro multi 100.0 1.6E-34 3.4E-39 356.4 25.2 217 27-264 1283-1508(1522)
325 TIGR02868 CydC thiol reductant 100.0 9.4E-35 2E-39 326.0 20.9 189 27-234 333-529 (529)
326 TIGR01187 potA spermidine/putr 100.0 8.8E-35 1.9E-39 306.7 18.9 187 67-264 1-190 (325)
327 PRK15177 Vi polysaccharide exp 100.0 1.6E-34 3.6E-39 287.0 19.0 194 50-268 1-196 (213)
328 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.8E-34 6.2E-39 323.5 22.8 214 27-264 3-248 (552)
329 PTZ00243 ABC transporter; Prov 100.0 2.6E-34 5.6E-39 353.9 23.5 216 28-264 1308-1533(1560)
330 KOG0056|consensus 100.0 4.6E-35 1E-39 306.7 14.3 210 25-264 534-761 (790)
331 cd03222 ABC_RNaseL_inhibitor T 100.0 2.4E-34 5.2E-39 277.2 18.3 153 32-260 4-159 (177)
332 cd03238 ABC_UvrA The excision 100.0 3.2E-34 7E-39 276.0 18.9 164 47-257 6-170 (176)
333 PTZ00265 multidrug resistance 100.0 3E-34 6.5E-39 351.0 23.3 211 28-251 382-655 (1466)
334 COG4619 ABC-type uncharacteriz 100.0 6.9E-35 1.5E-39 269.3 13.4 194 46-253 13-212 (223)
335 PRK11819 putative ABC transpor 100.0 1.2E-33 2.5E-38 318.7 23.4 204 27-262 323-531 (556)
336 PRK10636 putative ABC transpor 100.0 7.4E-34 1.6E-38 324.4 21.7 202 27-264 311-517 (638)
337 cd03236 ABC_RNaseL_inhibitor_d 100.0 5.3E-34 1.2E-38 290.7 17.1 197 33-257 5-220 (255)
338 PRK13409 putative ATPase RIL; 100.0 1.3E-33 2.7E-38 318.7 21.7 198 26-259 338-537 (590)
339 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2E-33 4.4E-38 316.5 23.0 203 27-261 321-528 (552)
340 TIGR01271 CFTR_protein cystic 100.0 1.5E-33 3.3E-38 346.7 23.5 216 27-264 1216-1440(1490)
341 COG4674 Uncharacterized ABC-ty 100.0 4.5E-34 9.6E-39 270.0 14.1 222 27-264 4-235 (249)
342 cd00267 ABC_ATPase ABC (ATP-bi 100.0 5E-33 1.1E-37 263.0 19.4 153 31-252 2-157 (157)
343 PLN03073 ABC transporter F fam 100.0 9.1E-33 2E-37 317.3 23.2 204 27-265 507-715 (718)
344 COG1101 PhnK ABC-type uncharac 100.0 3.5E-33 7.5E-38 267.8 16.0 219 29-257 2-231 (263)
345 PRK10636 putative ABC transpor 100.0 1E-32 2.3E-37 315.0 22.3 209 29-262 2-234 (638)
346 PRK11147 ABC transporter ATPas 100.0 1.5E-32 3.3E-37 314.0 22.0 204 27-262 318-526 (635)
347 PRK11147 ABC transporter ATPas 100.0 5.2E-32 1.1E-36 309.6 23.0 210 28-262 3-241 (635)
348 TIGR00954 3a01203 Peroxysomal 100.0 6.8E-32 1.5E-36 309.3 20.8 196 28-250 451-653 (659)
349 COG5265 ATM1 ABC-type transpor 100.0 2.6E-32 5.7E-37 283.5 15.1 197 27-264 261-486 (497)
350 COG4107 PhnK ABC-type phosphon 100.0 5.4E-32 1.2E-36 251.4 15.4 215 28-264 6-241 (258)
351 PLN03232 ABC transporter C fam 100.0 1.4E-31 3E-36 329.9 23.7 208 28-264 614-828 (1495)
352 COG1134 TagH ABC-type polysacc 100.0 2.8E-31 6E-36 260.9 20.8 209 27-269 2-241 (249)
353 COG4167 SapF ABC-type antimicr 100.0 1.2E-31 2.5E-36 251.0 15.5 205 28-264 4-239 (267)
354 PLN03130 ABC transporter C fam 100.0 3E-31 6.5E-36 327.5 23.0 207 28-264 614-828 (1622)
355 KOG0059|consensus 100.0 1.3E-31 2.8E-36 315.2 17.3 223 27-267 563-790 (885)
356 TIGR00957 MRP_assoc_pro multi 100.0 6.5E-31 1.4E-35 324.4 24.1 207 28-264 636-850 (1522)
357 PRK13409 putative ATPase RIL; 100.0 1.1E-31 2.4E-36 303.0 15.4 181 49-251 87-287 (590)
358 COG0488 Uup ATPase components 100.0 2.2E-30 4.8E-35 286.2 21.2 211 27-261 2-237 (530)
359 PLN03073 ABC transporter F fam 100.0 1E-30 2.2E-35 300.4 17.8 214 25-262 174-429 (718)
360 COG4136 ABC-type uncharacteriz 100.0 1.4E-30 3E-35 236.7 14.5 190 28-235 2-196 (213)
361 COG4133 CcmA ABC-type transpor 100.0 9.8E-31 2.1E-35 246.7 13.8 170 28-236 2-192 (209)
362 TIGR01271 CFTR_protein cystic 100.0 5.3E-30 1.1E-34 315.5 23.4 191 49-264 439-636 (1490)
363 cd03270 ABC_UvrA_I The excisio 100.0 5.6E-30 1.2E-34 256.8 18.5 194 47-257 6-226 (226)
364 PTZ00243 ABC transporter; Prov 100.0 2.2E-29 4.7E-34 310.5 21.4 194 47-264 671-870 (1560)
365 KOG0054|consensus 100.0 1.9E-28 4.2E-33 289.9 21.5 209 27-264 1137-1362(1381)
366 cd03278 ABC_SMC_barmotin Barmo 100.0 5.6E-29 1.2E-33 244.4 13.8 165 53-250 14-190 (197)
367 COG4138 BtuD ABC-type cobalami 100.0 1.6E-29 3.4E-34 235.2 7.2 198 28-264 3-221 (248)
368 KOG0054|consensus 100.0 1.6E-27 3.5E-32 282.2 22.0 210 26-264 516-731 (1381)
369 PF00005 ABC_tran: ABC transpo 100.0 2.3E-28 5E-33 225.1 11.3 121 52-203 1-137 (137)
370 cd03271 ABC_UvrA_II The excisi 100.0 1.2E-27 2.6E-32 243.8 17.2 194 49-259 8-261 (261)
371 COG4778 PhnL ABC-type phosphon 100.0 2.4E-28 5.2E-33 226.4 10.5 208 27-250 3-227 (235)
372 COG0488 Uup ATPase components 99.9 6.1E-27 1.3E-31 259.0 20.5 206 25-264 318-525 (530)
373 cd03279 ABC_sbcCD SbcCD and ot 99.9 4.7E-27 1E-31 233.5 15.2 192 28-252 5-210 (213)
374 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.5E-26 3.2E-31 234.0 15.4 184 47-249 13-234 (243)
375 COG1129 MglA ABC-type sugar tr 99.9 1.2E-25 2.5E-30 243.5 20.3 217 25-259 260-485 (500)
376 COG4615 PvdE ABC-type sideroph 99.9 9.9E-27 2.2E-31 239.7 11.2 192 27-258 321-531 (546)
377 cd03240 ABC_Rad50 The catalyti 99.9 1.2E-25 2.5E-30 222.1 14.4 170 54-252 15-200 (204)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.9 5.4E-26 1.2E-30 225.7 9.7 153 47-250 15-204 (212)
379 cd03273 ABC_SMC2_euk Eukaryoti 99.9 5.7E-25 1.2E-29 223.9 14.8 181 62-249 25-242 (251)
380 KOG0062|consensus 99.9 2.9E-24 6.2E-29 228.4 16.0 141 26-174 78-228 (582)
381 PRK00349 uvrA excinuclease ABC 99.9 1.1E-23 2.4E-28 246.1 19.9 96 167-264 823-927 (943)
382 COG4178 ABC-type uncharacteriz 99.9 1.5E-23 3.4E-28 231.1 17.4 175 26-249 390-587 (604)
383 PRK00635 excinuclease ABC subu 99.9 3.8E-23 8.2E-28 251.1 22.1 95 168-264 803-906 (1809)
384 COG4172 ABC-type uncharacteriz 99.9 1.7E-23 3.6E-28 216.8 15.3 172 22-195 270-478 (534)
385 COG3845 ABC-type uncharacteriz 99.9 1.2E-22 2.6E-27 216.2 22.2 225 26-261 255-489 (501)
386 TIGR00630 uvra excinuclease AB 99.9 5.4E-23 1.2E-27 240.0 20.9 94 167-262 821-923 (924)
387 COG4170 SapD ABC-type antimicr 99.9 3.6E-23 7.8E-28 197.8 9.9 227 29-264 4-248 (330)
388 KOG0927|consensus 99.9 6.1E-23 1.3E-27 219.4 11.8 222 27-263 74-308 (614)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.6E-22 3.4E-27 198.9 13.9 168 52-252 12-192 (198)
390 KOG0927|consensus 99.9 4.9E-23 1.1E-27 220.2 11.0 186 26-261 387-593 (614)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.6E-22 5.7E-27 204.0 12.9 178 60-249 21-232 (247)
392 COG1245 Predicted ATPase, RNas 99.9 1E-21 2.2E-26 206.2 16.5 189 26-249 340-530 (591)
393 PF01061 ABC2_membrane: ABC-2 99.9 2.3E-23 5E-28 203.5 1.2 208 333-543 1-210 (210)
394 cd03277 ABC_SMC5_euk Eukaryoti 99.9 2.1E-21 4.5E-26 193.0 14.4 172 52-252 14-211 (213)
395 KOG2355|consensus 99.9 6.6E-21 1.4E-25 182.0 15.7 200 26-265 11-238 (291)
396 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.4E-21 3E-26 192.4 11.5 147 51-257 16-172 (200)
397 KOG0060|consensus 99.8 5E-20 1.1E-24 198.5 17.9 176 27-250 432-641 (659)
398 cd03239 ABC_SMC_head The struc 99.8 2E-19 4.4E-24 173.8 14.2 153 53-250 13-172 (178)
399 KOG0066|consensus 99.8 9.5E-20 2.1E-24 189.8 12.2 175 26-250 584-776 (807)
400 cd03285 ABC_MSH2_euk MutS2 hom 99.8 1.9E-19 4E-24 180.1 10.3 155 48-258 16-175 (222)
401 cd03241 ABC_RecN RecN ATPase i 99.8 9.6E-19 2.1E-23 180.7 14.3 76 173-251 169-248 (276)
402 COG1245 Predicted ATPase, RNas 99.8 5.9E-19 1.3E-23 185.5 11.8 159 58-250 96-288 (591)
403 cd03227 ABC_Class2 ABC-type Cl 99.8 1.7E-18 3.7E-23 164.8 12.0 144 53-250 12-155 (162)
404 COG2401 ABC-type ATPase fused 99.8 1.3E-18 2.9E-23 180.8 12.0 168 47-253 394-587 (593)
405 COG0178 UvrA Excinuclease ATPa 99.8 8.2E-18 1.8E-22 187.4 18.5 96 167-264 815-919 (935)
406 cd03243 ABC_MutS_homologs The 99.8 7E-19 1.5E-23 173.4 7.5 156 54-262 21-177 (202)
407 cd03283 ABC_MutS-like MutS-lik 99.8 1.3E-18 2.9E-23 171.1 9.1 136 49-236 14-150 (199)
408 PRK00635 excinuclease ABC subu 99.7 2.4E-17 5.3E-22 201.0 17.8 97 166-264 1691-1796(1809)
409 KOG0064|consensus 99.7 1.6E-17 3.4E-22 177.1 12.9 171 27-248 480-681 (728)
410 cd03282 ABC_MSH4_euk MutS4 hom 99.7 2.6E-17 5.7E-22 162.5 9.0 136 48-235 15-152 (204)
411 PRK00349 uvrA excinuclease ABC 99.7 1.2E-16 2.6E-21 187.5 12.0 94 168-263 483-584 (943)
412 TIGR00630 uvra excinuclease AB 99.7 1.6E-16 3.4E-21 186.2 12.5 94 168-263 481-582 (924)
413 cd03284 ABC_MutS1 MutS1 homolo 99.7 1.5E-16 3.2E-21 158.6 9.5 160 48-263 17-180 (216)
414 KOG0066|consensus 99.7 9.8E-17 2.1E-21 167.5 7.5 215 26-259 262-494 (807)
415 cd03242 ABC_RecF RecF is a rec 99.6 2.5E-15 5.4E-20 154.9 13.5 76 173-253 182-269 (270)
416 TIGR02858 spore_III_AA stage I 99.6 1.5E-15 3.3E-20 155.7 10.3 140 63-262 112-267 (270)
417 smart00534 MUTSac ATPase domai 99.6 2.7E-15 5.9E-20 146.0 5.6 140 64-256 1-142 (185)
418 PRK00064 recF recombination pr 99.5 2.4E-13 5.3E-18 145.7 19.3 81 169-253 268-359 (361)
419 KOG0063|consensus 99.5 4E-14 8.7E-19 148.2 11.3 159 49-249 349-531 (592)
420 PF02463 SMC_N: RecF/RecN/SMC 99.5 2.5E-13 5.4E-18 135.4 13.5 77 144-249 136-212 (220)
421 TIGR01069 mutS2 MutS2 family p 99.5 6.1E-14 1.3E-18 162.8 9.2 131 54-236 313-447 (771)
422 TIGR01247 drrB daunorubicin re 99.4 4.5E-12 9.9E-17 127.7 19.2 226 341-596 1-234 (236)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.4 4.3E-13 9.3E-18 133.5 11.0 131 50-235 17-155 (213)
424 TIGR03062 pip_yhgE_Cterm YhgE/ 99.4 3.7E-12 8.1E-17 125.8 16.8 151 423-602 57-207 (208)
425 cd03287 ABC_MSH3_euk MutS3 hom 99.4 6.2E-13 1.3E-17 132.9 11.2 134 49-235 18-155 (222)
426 PRK14079 recF recombination pr 99.4 4.9E-13 1.1E-17 142.7 9.8 77 174-258 263-348 (349)
427 PRK07721 fliI flagellum-specif 99.4 6.9E-12 1.5E-16 136.7 17.1 166 49-261 146-340 (438)
428 cd01128 rho_factor Transcripti 99.3 5.8E-12 1.3E-16 127.9 12.1 171 57-253 11-211 (249)
429 KOG0062|consensus 99.3 1.1E-12 2.5E-17 140.5 7.0 187 24-259 358-564 (582)
430 TIGR01291 nodJ ABC-2 type tran 99.3 2.2E-10 4.7E-15 117.1 22.0 234 335-601 7-250 (253)
431 TIGR00025 Mtu_efflux ABC trans 99.3 1.8E-10 4E-15 115.8 21.0 221 347-599 2-229 (232)
432 KOG0063|consensus 99.3 3E-12 6.5E-17 134.3 7.9 83 167-250 206-288 (592)
433 PRK00409 recombination and DNA 99.3 2.3E-12 4.9E-17 150.2 7.8 148 56-256 320-470 (782)
434 cd03286 ABC_MSH6_euk MutS6 hom 99.3 4.7E-12 1E-16 126.2 8.2 135 48-235 16-154 (218)
435 TIGR03861 phenyl_ABC_PedC alco 99.3 6E-10 1.3E-14 113.6 23.0 236 332-600 1-250 (253)
436 TIGR00611 recf recF protein. A 99.3 1.1E-11 2.4E-16 133.0 9.2 61 172-235 273-342 (365)
437 TIGR02788 VirB11 P-type DNA tr 99.2 4.3E-11 9.3E-16 125.7 11.6 142 55-263 137-280 (308)
438 cd00820 PEPCK_HprK Phosphoenol 99.2 1.9E-11 4.1E-16 107.7 6.9 72 49-130 2-76 (107)
439 cd01124 KaiC KaiC is a circadi 99.2 3.5E-11 7.6E-16 116.3 8.9 149 65-249 2-163 (187)
440 PRK13830 conjugal transfer pro 99.2 1.5E-10 3.2E-15 136.3 15.7 94 166-259 604-728 (818)
441 TIGR00634 recN DNA repair prot 99.2 2E-11 4.4E-16 138.3 8.0 76 174-252 440-519 (563)
442 PTZ00132 GTP-binding nuclear p 99.2 7.5E-11 1.6E-15 117.1 11.0 52 171-222 147-205 (215)
443 TIGR00618 sbcc exonuclease Sbc 99.2 4.8E-11 1E-15 144.4 10.6 90 137-251 943-1036(1042)
444 PRK08533 flagellar accessory p 99.2 5.9E-11 1.3E-15 119.5 9.6 151 58-249 20-184 (230)
445 PRK13695 putative NTPase; Prov 99.2 4.5E-11 9.8E-16 115.0 7.3 65 188-258 92-158 (174)
446 PHA02562 46 endonuclease subun 99.1 5E-11 1.1E-15 135.2 7.7 80 170-253 464-555 (562)
447 PRK10869 recombination and rep 99.1 6.9E-11 1.5E-15 133.2 8.6 74 175-251 431-508 (553)
448 cd01120 RecA-like_NTPases RecA 99.1 1.2E-10 2.6E-15 108.8 8.9 53 185-237 78-140 (165)
449 PRK15066 inner membrane transp 99.1 1.4E-08 3E-13 103.9 23.9 242 331-604 6-255 (257)
450 PRK03918 chromosome segregatio 99.1 1.3E-10 2.8E-15 138.6 10.1 85 139-249 783-867 (880)
451 COG0178 UvrA Excinuclease ATPa 99.1 4.7E-10 1E-14 126.2 12.9 97 166-264 473-577 (935)
452 PRK06793 fliI flagellum-specif 99.1 4.9E-10 1.1E-14 121.5 11.2 158 49-259 144-306 (432)
453 PF13304 AAA_21: AAA domain; P 99.1 3.3E-10 7.2E-15 112.3 8.1 61 175-235 237-300 (303)
454 COG3910 Predicted ATPase [Gene 99.1 7.6E-10 1.6E-14 105.4 9.8 43 193-235 147-189 (233)
455 PRK01156 chromosome segregatio 99.0 6.4E-10 1.4E-14 132.9 11.2 83 141-249 798-883 (895)
456 cd01131 PilT Pilus retraction 99.0 1.1E-09 2.4E-14 107.8 10.9 120 64-249 3-122 (198)
457 PRK10246 exonuclease subunit S 98.9 1.7E-09 3.6E-14 130.7 9.3 80 170-250 945-1032(1047)
458 PRK06067 flagellar accessory p 98.9 5.2E-09 1.1E-13 105.5 11.1 157 51-249 13-186 (234)
459 TIGR01420 pilT_fam pilus retra 98.8 1.7E-08 3.7E-13 107.7 11.7 125 59-249 119-243 (343)
460 COG0842 ABC-type multidrug tra 98.8 2.2E-07 4.9E-12 94.4 18.8 153 426-604 131-285 (286)
461 smart00382 AAA ATPases associa 98.8 1.3E-07 2.9E-12 84.8 15.1 117 61-232 1-124 (148)
462 TIGR00606 rad50 rad50. This fa 98.8 6.9E-09 1.5E-13 128.3 8.1 69 173-242 1198-1277(1311)
463 TIGR03238 dnd_assoc_3 dnd syst 98.8 4E-09 8.6E-14 114.5 5.2 52 49-102 19-70 (504)
464 PRK13891 conjugal transfer pro 98.8 1.2E-07 2.5E-12 112.4 18.0 69 185-254 680-751 (852)
465 TIGR02168 SMC_prok_B chromosom 98.8 7.7E-09 1.7E-13 126.5 7.6 75 172-249 1087-1165(1179)
466 cd01125 repA Hexameric Replica 98.8 2.7E-08 5.9E-13 100.7 9.7 45 190-235 109-160 (239)
467 cd01130 VirB11-like_ATPase Typ 98.7 1E-07 2.3E-12 92.8 12.0 131 51-248 14-147 (186)
468 TIGR01026 fliI_yscN ATPase Fli 98.7 1.3E-07 2.9E-12 103.5 14.1 169 49-262 151-346 (440)
469 TIGR01248 drrC daunorubicin re 98.7 1.3E-07 2.9E-12 89.1 11.0 131 407-539 14-146 (152)
470 PRK02224 chromosome segregatio 98.7 3.9E-08 8.4E-13 117.5 8.6 67 182-250 795-868 (880)
471 TIGR02655 circ_KaiC circadian 98.7 1.5E-09 3.2E-14 120.9 -3.3 159 51-249 9-190 (484)
472 TIGR02169 SMC_prok_A chromosom 98.6 5.3E-08 1.1E-12 119.4 7.9 75 173-250 1073-1151(1164)
473 COG0419 SbcC ATPase involved i 98.6 1.7E-07 3.6E-12 112.3 10.7 85 140-250 811-897 (908)
474 COG0411 LivG ABC-type branched 98.6 5.8E-08 1.3E-12 96.5 5.3 182 28-222 17-218 (250)
475 PRK13898 type IV secretion sys 98.6 1.9E-06 4.1E-11 101.9 18.5 49 188-236 638-687 (800)
476 TIGR03881 KaiC_arch_4 KaiC dom 98.6 8.5E-08 1.9E-12 96.2 6.1 47 51-99 8-57 (229)
477 PRK06002 fliI flagellum-specif 98.5 3.9E-07 8.4E-12 99.3 10.2 87 23-118 134-230 (450)
478 COG1117 PstB ABC-type phosphat 98.5 2.1E-07 4.5E-12 90.8 6.1 74 125-198 126-204 (253)
479 cd02023 UMPK Uridine monophosp 98.5 1.1E-07 2.3E-12 93.3 4.0 23 64-86 1-23 (198)
480 PRK05399 DNA mismatch repair p 98.5 4.6E-07 9.9E-12 107.3 10.0 140 49-244 595-738 (854)
481 CHL00131 ycf16 sulfate ABC tra 98.5 3.3E-07 7.1E-12 93.3 7.4 74 125-198 130-207 (252)
482 PRK13873 conjugal transfer ATP 98.4 2.9E-06 6.3E-11 100.5 16.1 49 188-236 631-680 (811)
483 TIGR00416 sms DNA repair prote 98.4 6.6E-07 1.4E-11 98.8 8.3 144 51-252 82-247 (454)
484 PRK14264 phosphate ABC transpo 98.3 8.5E-07 1.8E-11 93.2 7.1 74 125-198 177-255 (305)
485 PRK06995 flhF flagellar biosyn 98.3 1.6E-06 3.5E-11 95.7 9.0 147 50-232 244-400 (484)
486 PRK07196 fliI flagellum-specif 98.3 7.5E-07 1.6E-11 97.0 6.2 80 49-129 143-233 (434)
487 PLN03210 Resistant to P. syrin 98.3 2E-06 4.3E-11 105.6 9.0 47 53-99 198-244 (1153)
488 cd01121 Sms Sms (bacterial rad 98.2 3.3E-06 7.2E-11 90.9 9.4 42 57-99 77-119 (372)
489 PF13558 SbcCD_C: Putative exo 98.2 3E-06 6.6E-11 72.7 7.0 57 139-219 27-90 (90)
490 cd01122 GP4d_helicase GP4d_hel 98.2 1.7E-05 3.6E-10 81.6 13.5 37 49-85 17-53 (271)
491 TIGR02680 conserved hypothetic 98.2 2.1E-06 4.5E-11 106.4 7.6 43 189-234 1274-1316(1353)
492 COG1195 RecF Recombinational D 98.2 1.4E-05 3E-10 84.8 11.8 82 167-253 267-361 (363)
493 cd00009 AAA The AAA+ (ATPases 98.2 9.9E-06 2.2E-10 73.3 9.3 44 191-235 83-131 (151)
494 TIGR03518 ABC_perm_GldF glidin 98.2 0.00034 7.3E-09 71.1 21.3 217 336-600 2-239 (240)
495 PF13555 AAA_29: P-loop contai 98.1 2.8E-06 6E-11 67.4 4.4 36 52-87 12-48 (62)
496 COG4637 Predicted ATPase [Gene 98.1 9.5E-06 2.1E-10 83.4 9.3 60 175-235 271-332 (373)
497 PF00488 MutS_V: MutS domain V 98.1 5.2E-05 1.1E-09 76.7 14.2 49 193-243 123-173 (235)
498 PRK00300 gmk guanylate kinase; 98.1 1.1E-05 2.3E-10 79.5 8.8 28 60-87 3-30 (205)
499 PF09818 ABC_ATPase: Predicted 98.1 7.4E-05 1.6E-09 80.6 15.5 149 58-252 241-415 (448)
500 TIGR02524 dot_icm_DotB Dot/Icm 98.1 1.3E-05 2.7E-10 86.1 9.7 124 60-248 132-259 (358)
No 1
>KOG0061|consensus
Probab=100.00 E-value=1.5e-102 Score=879.67 Aligned_cols=557 Identities=35% Similarity=0.636 Sum_probs=477.1
Q ss_pred CCCCCCceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCccEEEEC
Q psy13765 20 SLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTN 97 (606)
Q Consensus 20 ~~~~~~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~~~G~I~~~ 97 (606)
..+...++.++|+|++++.+.+.. ..|++|+|||++++|||++|||||||||||||||+|+|+... ..+|+|.+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~---~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 17 ELPYLEPVKLSFRNLTLSSKEKSK---KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred cccccccceeEEEEEEEEecCCCC---ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 344566789999999999864321 468899999999999999999999999999999999999875 379999999
Q ss_pred CccCChhhhcccEEEEccCCCCCCCCcHHHH-------------------------HHHcCCccccCCccccCChHHHHH
Q psy13765 98 GHSRNINAFRRVSCYIQQDDRLQPLLTIENV-------------------------MSLLGLDESQNTRSSQLSGGQKKR 152 (606)
Q Consensus 98 G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~-------------------------l~~~gl~~~~~~~~~~lSgGqrqR 152 (606)
|++.+.+.+++.+|||.|||.++|.+||+|. ++.+||.+++|+++++
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~-------- 165 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGN-------- 165 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecC--------
Confidence 9888888999999999999999999998554 4455555555555542
Q ss_pred HHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy13765 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH 232 (606)
Q Consensus 153 v~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H 232 (606)
.-..++||||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+|+|
T Consensus 166 -----------------~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIH 228 (613)
T KOG0061|consen 166 -----------------PGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIH 228 (613)
T ss_pred -----------------CCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEe
Confidence 222334444444444555555559999999999999999999999999999999999999999
Q ss_pred CCchHHHhhcceeeeecCCcEEEEcChhHHHHHHHhCCCCCCCCCChHHHHHHHhcCCcCcccHHHHHHHHhcCCC---C
Q psy13765 233 QPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVEQAQNDVK---P 309 (606)
Q Consensus 233 ~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 309 (606)
||+.+++++||++++|++|+++|+|+++++.+||++.|++||++.||+||++|+.+.+...+......+..+.... .
T Consensus 229 QPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~ 308 (613)
T KOG0061|consen 229 QPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQT 308 (613)
T ss_pred CCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999865111121111111111100 0
Q ss_pred cccccc---cc-cc-c-ccCccccCCChHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHh
Q psy13765 310 DKKTKK---TK-HC-T-YSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLI 383 (606)
Q Consensus 310 ~~~~~~---~~-~~-~-~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f~~~~~~~~~~~~ 383 (606)
....+. .. .. . ...+....++||.|+++|++|.+++.+|||.+...|+++.+++|+++|++||+.+++..++++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~ 388 (613)
T KOG0061|consen 309 DNLKKTLEALEKSLSTSKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQN 388 (613)
T ss_pred chhhhhHHHHhhhcccccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHH
Confidence 000000 00 00 0 111111278999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHH
Q psy13765 384 NYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTR 463 (606)
Q Consensus 384 ~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~ 463 (606)
+.|++|+++.+..+.+++.++..|+.||++|.||+.+|+|+.++||+|++++++|+.++.+++|.+|+|||+|++++..+
T Consensus 389 ~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~ 468 (613)
T KOG0061|consen 389 RLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSR 468 (613)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhccccc-hhHHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHH
Q psy13765 464 FTMFNCTSLLVVFIAQSVGYMVGAVFNV-VNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAI 542 (606)
Q Consensus 464 f~~f~~~~~l~~~~~~~~g~~i~~~~~~-~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~ 542 (606)
|++|++++++..++++++|++++++.++ ..|++++|++++++++|+||+++.++||+||+|++|+||++|++||++.||
T Consensus 469 f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~ 548 (613)
T KOG0061|consen 469 FLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQ 548 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999874 459999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccccCCC--ccccCChhHHHhhcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy13765 543 YGLDRKTLQCDEL--YCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR 606 (606)
Q Consensus 543 ~~~~~~~~~c~~~--~c~~~~g~~~L~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~~~~r 606 (606)
|+. ....|... .|...+|+++++..++.+.+.|.|+.+++++.++|++++|++|+++.|++|
T Consensus 549 ~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 549 FSG--GSSRCFLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred hhc--cccccccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 984 34556532 466678999999999999999999999999999999999999999999875
No 2
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=4.2e-100 Score=867.67 Aligned_cols=569 Identities=27% Similarity=0.438 Sum_probs=466.9
Q ss_pred CCCceEEEEEeeEEEEecCC---------------------cccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHH
Q psy13765 23 TADRIEIKFKDLTYTVSTGL---------------------GFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDV 81 (606)
Q Consensus 23 ~~~~~~l~~~nl~~~~~~~~---------------------~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~ 81 (606)
...++.+++.|++|+++.+. +.+++++++|+|+|+++++||++||+||||||||||||+
T Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~i 113 (659)
T PLN03211 34 SCYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNA 113 (659)
T ss_pred CCCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHH
Confidence 34578999999999986432 112345789999999999999999999999999999999
Q ss_pred HhCCCCCC-CccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHH-HHHHHHHHH
Q psy13765 82 LSGYRSNG-VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK-KRLSIALEL 159 (606)
Q Consensus 82 L~g~~~~~-~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L 159 (606)
|+|+.++. .+|+|.+||++... ..++.+|||+|++.+++.+||.|.+...... +.....+.-|+ +++.-..+.
T Consensus 114 LaG~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~----~~~~~~~~~~~~~~v~~~l~~ 188 (659)
T PLN03211 114 LAGRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLL----RLPKSLTKQEKILVAESVISE 188 (659)
T ss_pred HhCCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHHH
Confidence 99997653 58999999987653 3456799999999999999998887642111 11123444343 334322222
Q ss_pred hc---CCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765 160 IN---NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSA 236 (606)
Q Consensus 160 ~~---~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 236 (606)
+. ..+-.+.|++..++|||||||++||++|+++|+||+|||||+|||+.++.++++.|++++++|+|||+++|||+.
T Consensus 189 lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~ 268 (659)
T PLN03211 189 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSS 268 (659)
T ss_pred cCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Confidence 21 123345677889999999999999999999999999999999999999999999999999889999999999987
Q ss_pred HHHhhcceeeeecCCcEEEEcChhHHHHHHHhCCCCCCCCCChHHHHHHHhcCCcCc------cc---HHHHHHHHhcCC
Q psy13765 237 TLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGV------DN---INAMVEQAQNDV 307 (606)
Q Consensus 237 ~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~~~~~~~~~~------~~---~~~~~~~~~~~~ 307 (606)
++.++||++++|++|++++.|+++++.+||+++|++||.+.|||||++++++.+... +. .+.+.+.++...
T Consensus 269 ~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (659)
T PLN03211 269 RVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL 348 (659)
T ss_pred HHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc
Confidence 788999999999999999999999999999999999999999999999998764211 00 111222222111
Q ss_pred CCcccc-------cc-ccc-----cccc---CccccCCChHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhh
Q psy13765 308 KPDKKT-------KK-TKH-----CTYS---NQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLF 371 (606)
Q Consensus 308 ~~~~~~-------~~-~~~-----~~~~---~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f 371 (606)
.+.... .. ... ..+. ....+.++||+|+++|++|++++ +||+.+..+|+++++++|+++|++|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf 427 (659)
T PLN03211 349 APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMW 427 (659)
T ss_pred cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 100000 00 000 0000 11224578999999999999988 8999999999999999999999999
Q ss_pred cCCCCChHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhh
Q psy13765 372 QNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIV 451 (606)
Q Consensus 372 ~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~ 451 (606)
|+++ ..+++++.|++||++++..+.++++++..|+.||++|+||+.+|+|++++|++||+++|+|+.++.+++|++|+
T Consensus 428 ~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~ 505 (659)
T PLN03211 428 WHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVT 505 (659)
T ss_pred hcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 9985 67899999999999999888888899999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhccccch-hHHHHHHHHHHHHHHhcccccCCCCcccccccccccCH
Q psy13765 452 YPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVV-NGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSY 530 (606)
Q Consensus 452 Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~~~~~-~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~ 530 (606)
|||+|+++++.+|++|+++++++.++++++|+++++++++. .|+.++|++++++++|+||+++ +||+||+|++|+||
T Consensus 506 Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~ 583 (659)
T PLN03211 506 YWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYIST 583 (659)
T ss_pred eEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCH
Confidence 99999999999999999999999999999999999998754 5999999999999999999997 79999999999999
Q ss_pred HHHHHHHHHHHHhcCCCc---ccccCCCccccCChhHHHhhcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhh
Q psy13765 531 LRYGLEGYVAAIYGLDRK---TLQCDELYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWR 601 (606)
Q Consensus 531 ~~y~~eal~~n~~~~~~~---~~~c~~~~c~~~~g~~~L~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~ 601 (606)
++|++||++.|||+..+. .+.|++.+|....+-.++....+.+.+.|.|+++|++++++|++++|++|++.
T Consensus 584 ~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 584 TFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999975332 35787555543333334444455566799999999999999999999999754
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.1e-99 Score=862.63 Aligned_cols=576 Identities=30% Similarity=0.508 Sum_probs=484.9
Q ss_pred CCCCceEEEEEeeEEEEecCC-cccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CccEEEECC
Q psy13765 22 ETADRIEIKFKDLTYTVSTGL-GFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG--VTGQILTNG 98 (606)
Q Consensus 22 ~~~~~~~l~~~nl~~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~--~~G~I~~~G 98 (606)
......+++++++. +++... +.+++++++|+|+|+++++||+++|+|||||||||||++|+|+.+++ .+|+|.+||
T Consensus 11 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g 89 (617)
T TIGR00955 11 FGRVAQDGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNG 89 (617)
T ss_pred cccccccchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECC
Confidence 33445677888877 554332 12244678999999999999999999999999999999999987653 479999999
Q ss_pred ccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHH-HHHHHHHHhcCCcccccCCCC-----
Q psy13765 99 HSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK-RLSIALELINNPRVMFLDEPT----- 172 (606)
Q Consensus 99 ~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrq-Rv~ia~~L~~~~~~~~~de~~----- 172 (606)
.+.+...+++.+|||+|+|.+++.+||.|.+...... +...+++.-+++ |+.-..+.+.-.+ ..|.+.
T Consensus 90 ~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~----~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~ 163 (617)
T TIGR00955 90 MPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHL----RMPRRVTKKEKRERVDEVLQALGLRK--CANTRIGVPGR 163 (617)
T ss_pred EECCHHHHhhhceeeccccccCccCcHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHcCchh--cCcCccCCCCC
Confidence 9877667888999999999999999998877642110 112334544432 3443333322211 234443
Q ss_pred -CCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765 173 -TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGG 251 (606)
Q Consensus 173 -~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 251 (606)
.++||||||||+||+||+++|++++|||||+|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++|
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G 243 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEG 243 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCC
Confidence 4699999999999999999999999999999999999999999999999889999999999988899999999999999
Q ss_pred cEEEEcChhHHHHHHHhCCCCCCCCCChHHHHHHHhcCCcCccc-----HHHHHHHHhcCCCCccccc-----ccc-c--
Q psy13765 252 QCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDN-----INAMVEQAQNDVKPDKKTK-----KTK-H-- 318 (606)
Q Consensus 252 ~~~~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~-~-- 318 (606)
+++|.|+++++.+||+++|++||++.||+||++++++.+.+.+. .+++.+.++.+.......+ ... .
T Consensus 244 ~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 323 (617)
T TIGR00955 244 RVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGL 323 (617)
T ss_pred eEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhcccccc
Confidence 99999999999999999999999999999999999876543211 1222233322211000000 000 0
Q ss_pred -ccc--cCccccCCChHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhHHHHHHHHHHHH
Q psy13765 319 -CTY--SNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHH 395 (606)
Q Consensus 319 -~~~--~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f~~~~~~~~~~~~~~g~lf~~~~~~ 395 (606)
.+. .+...+..+++.|+.+|++|++++.+|||.++.+|+++.+++|+++|++|+++++++.+++++.|++|+++++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~ 403 (617)
T TIGR00955 324 VKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNM 403 (617)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 000 12234578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHH
Q psy13765 396 VMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVV 475 (606)
Q Consensus 396 ~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~ 475 (606)
.|.+++..+..|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||.|+++++++.
T Consensus 404 ~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~ 483 (617)
T TIGR00955 404 TFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVA 483 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHH
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHhccccchh-HHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccCC
Q psy13765 476 FIAQSVGYMVGAVFNVVN-GTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDE 554 (606)
Q Consensus 476 ~~~~~~g~~i~~~~~~~~-a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~ 554 (606)
++++++|+++++++++.. |+.+++++++++++|+||+++.++||+||+|++|+||++|++||++.|||++.. ..+|++
T Consensus 484 ~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~-~~~c~~ 562 (617)
T TIGR00955 484 NVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVD-NIECTS 562 (617)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCc-cccccC
Confidence 999999999999987654 999999999999999999999999999999999999999999999999997432 236752
Q ss_pred ----CccccCChhHHHhhcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy13765 555 ----LYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR 606 (606)
Q Consensus 555 ----~~c~~~~g~~~L~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~~~~r 606 (606)
..|+. +|+++|+.+|++.++.|.|+++|++++++|++++|++|+++.|++|
T Consensus 563 ~~~~~~c~~-~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 563 ANTTGPCPS-SGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cCcCCCCCc-ChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34864 6899999999999999999999999999999999999999999987
No 4
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1e-94 Score=877.10 Aligned_cols=574 Identities=22% Similarity=0.358 Sum_probs=472.6
Q ss_pred ceEEEEEeeEEEEecCCc-----ccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCccEEEECCc
Q psy13765 26 RIEIKFKDLTYTVSTGLG-----FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN-GVTGQILTNGH 99 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~-----~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~-~~~G~I~~~G~ 99 (606)
+..++|+||+|+++.+.. .+++++++|+|||++++|||++||+||||||||||||+|+|+.++ ..+|+|.+||+
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~ 944 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF 944 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCc
Confidence 458999999999964321 122456799999999999999999999999999999999999654 26899999998
Q ss_pred cCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHH-HHHHHHHHHhcCCcccccCCC-----CC
Q psy13765 100 SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK-KRLSIALELINNPRVMFLDEP-----TT 173 (606)
Q Consensus 100 ~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~~~~de~-----~~ 173 (606)
+.+...+++.+|||+|+|.+++.+||.|.+...... +...+.+.-++ +++.-..+.+.-.+ +.|.. ..
T Consensus 945 ~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~l----r~~~~~~~~~~~~~v~~vl~~lgL~~--~~~~~vg~~~~~ 1018 (1470)
T PLN03140 945 PKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFL----RLPKEVSKEEKMMFVDEVMELVELDN--LKDAIVGLPGVT 1018 (1470)
T ss_pred cCChHHhhhheEEEccccccCCCCcHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHHHCCChh--HhCCccCCCCCC
Confidence 766556678899999999999999998887642110 11223344333 33433333332111 23444 36
Q ss_pred CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC-Cc
Q psy13765 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG-GQ 252 (606)
Q Consensus 174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~ 252 (606)
++||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+
T Consensus 1019 ~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence 89999999999999999999999999999999999999999999999989999999999999778899999999986 89
Q ss_pred EEEEcCh----hHHHHHHHhC-CCC-CCCCCChHHHHHHHhcCCcCcccHHHHHHHHhcCCCCcccccc---cccc-c--
Q psy13765 253 CLYQGAT----DQLVNYLSSV-NLP-CPKYHNPADFVIELASGEYGVDNINAMVEQAQNDVKPDKKTKK---TKHC-T-- 320 (606)
Q Consensus 253 ~~~~G~~----~~~~~~f~~~-g~~-~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~-- 320 (606)
++|+|++ +++.+||+++ |++ ||+..|||||++|+++.........++.+.++++.......+. .... +
T Consensus 1099 ~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 1178 (1470)
T PLN03140 1099 VIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGA 1178 (1470)
T ss_pred EEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCc
Confidence 9999996 5899999997 664 9999999999999987543222112333444333211100000 0000 0
Q ss_pred -cc-CccccCCChHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcCCCCCh---HHHHhHHHHHHHHHHHH
Q psy13765 321 -YS-NQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYA---SSVLINYNLLFSILIHH 395 (606)
Q Consensus 321 -~~-~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f~~~~~~~---~~~~~~~g~lf~~~~~~ 395 (606)
+. ....+..++|+|+++|++|+++++||||.++.+|+++++++|+++|++||+++++. ++++++.|++|+++++.
T Consensus 1179 ~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~ 1258 (1470)
T PLN03140 1179 SDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFV 1258 (1470)
T ss_pred cccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHH
Confidence 00 13457889999999999999999999999999999999999999999999999765 56778899999999998
Q ss_pred HHHHHHHHhhhhhhhhhhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHH
Q psy13765 396 VMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVV 475 (606)
Q Consensus 396 ~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~ 475 (606)
++..+++..+.|..||++|+||+++|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+||+|+++++++.
T Consensus 1259 ~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~ 1338 (1470)
T PLN03140 1259 GINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSF 1338 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHhccccchh-HHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccCC
Q psy13765 476 FIAQSVGYMVGAVFNVVN-GTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDE 554 (606)
Q Consensus 476 ~~~~~~g~~i~~~~~~~~-a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~ 554 (606)
++++++|+++++++|+.. |..++++++.++++|+||++|+++||+||+|++|+||++|+++|++.|||++...+..|+.
T Consensus 1339 ~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~ 1418 (1470)
T PLN03140 1339 LYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPG 1418 (1470)
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCC
Confidence 999999999999987654 9999999999999999999999999999999999999999999999999974322223321
Q ss_pred CccccCChhHH-HhhcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy13765 555 LYCHYKEPKKF-LQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKVMR 606 (606)
Q Consensus 555 ~~c~~~~g~~~-L~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~~~~r 606 (606)
... ..+++++ ++.||+++++.|++++++++++++|++++++++++....+|
T Consensus 1419 ~~~-~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1419 GAP-DPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred CCC-CCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 000 1345666 57899999999999999999999999999999998877766
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.4e-94 Score=878.46 Aligned_cols=565 Identities=24% Similarity=0.390 Sum_probs=470.9
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCccEEEECCccCChh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTNGHSRNIN 104 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~~~G~I~~~G~~~~~~ 104 (606)
..++++||+++++.+ ++++.+|+|||+++++||++||+||||||||||||+|+|+.++ ..+|+|.+||++.+ .
T Consensus 758 ~~l~~~nl~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~-~ 832 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIK----KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-S 832 (1394)
T ss_pred ceEEEEeeEEEecCC----CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-h
Confidence 458999999998522 3457899999999999999999999999999999999999763 24799999999875 3
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHH-HHHHHHHHHhcCCcccccCCCCC----CCCchh
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK-KRLSIALELINNPRVMFLDEPTT----SNPNDQ 179 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~~~~de~~~----~~s~g~ 179 (606)
.+++.+|||+|+|.+++.+||.|.+...... +.+.+.+..++ +++.-+.+.+.-.+ +.|...+ ++||||
T Consensus 833 ~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l----~~~~~~~~~~~~~~v~~~l~~l~L~~--~~d~~v~~~~~~LSgGq 906 (1394)
T TIGR00956 833 SFQRSIGYVQQQDLHLPTSTVRESLRFSAYL----RQPKSVSKSEKMEYVEEVIKLLEMES--YADAVVGVPGEGLNVEQ 906 (1394)
T ss_pred hhhcceeeecccccCCCCCCHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHHHcCChh--hCCCeeCCCCCCCCHHH
Confidence 5788899999999999999998887652110 11223444443 34433333332211 3444443 799999
Q ss_pred hhHHHHHHhhhcCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCC-cEEEEc
Q psy13765 180 KKRLSIALELINNPR-VMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGG-QCLYQG 257 (606)
Q Consensus 180 ~krl~IA~aL~~~P~-lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G-~~~~~G 257 (606)
||||+||+||+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| ++++.|
T Consensus 907 rqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G 986 (1394)
T TIGR00956 907 RKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFG 986 (1394)
T ss_pred hhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEEC
Confidence 999999999999997 999999999999999999999999999889999999999997777899999999987 999999
Q ss_pred Ch----hHHHHHHHhCCC-CCCCCCChHHHHHHHhcCCcCcccHHHHHHHHhcCCCCcccc----c--cccc-cc-c---
Q psy13765 258 AT----DQLVNYLSSVNL-PCPKYHNPADFVIELASGEYGVDNINAMVEQAQNDVKPDKKT----K--KTKH-CT-Y--- 321 (606)
Q Consensus 258 ~~----~~~~~~f~~~g~-~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~-~~-~--- 321 (606)
++ +++.+||++.|+ +||++.|||||++|+++...+.+..+.+.+.++.+....... . .... .+ .
T Consensus 987 ~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1394)
T TIGR00956 987 DLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDP 1066 (1394)
T ss_pred CcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCcccccc
Confidence 97 578999999996 999999999999999876433222223333443322110000 0 0000 00 0
Q ss_pred cCccccCCChHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhHHHHHHHHHHHHHHHHHH
Q psy13765 322 SNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMM 401 (606)
Q Consensus 322 ~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~ 401 (606)
.....+.+|+++|+++|++|+++++||||.++.+|+++++++|+++|++|+++++++.+++++.|++|+++++..+. +.
T Consensus 1067 ~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~-~~ 1145 (1394)
T TIGR00956 1067 DALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPL-IQ 1145 (1394)
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 11235788999999999999999999999999999999999999999999999999999999999999888776655 45
Q ss_pred HHhhhhhhhhhhh-eecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHH-------HHHHHHHHHH
Q psy13765 402 LNILTFPMEMSIL-IKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTR-------FTMFNCTSLL 473 (606)
Q Consensus 402 ~~~~~f~~er~v~-~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~-------f~~f~~~~~l 473 (606)
..++.|+.||.+| +||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.. |++|++++++
T Consensus 1146 ~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~ 1225 (1394)
T TIGR00956 1146 QYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTM 1225 (1394)
T ss_pred HhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHH
Confidence 6788888899886 8999999999999999999999999999999999999999999988765 9999999999
Q ss_pred HHHHHHHHHhHHhccccc-hhHHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCccccc
Q psy13765 474 VVFIAQSVGYMVGAVFNV-VNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQC 552 (606)
Q Consensus 474 ~~~~~~~~g~~i~~~~~~-~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c 552 (606)
+.++++++|+++++++++ ..|+.++|++++++++|+||++++++||.||+|++|+||++|++||++.|+|++. +.+|
T Consensus 1226 ~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~--~~~C 1303 (1394)
T TIGR00956 1226 FFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADV--PVTC 1303 (1394)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCC--eeec
Confidence 999999999999999875 4599999999999999999999999999999999999999999999999999732 3444
Q ss_pred CC--------------------------------------CccccCChhHHHhhcCCCCCChhhhHHHHHHHHHHHHHHH
Q psy13765 553 DE--------------------------------------LYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIA 594 (606)
Q Consensus 553 ~~--------------------------------------~~c~~~~g~~~L~~~~~~~~~~w~~~~il~~~~~~~~~~~ 594 (606)
++ .||++.+|+++|+.+|++.+++|+|+++++++++++ +++
T Consensus 1304 ~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~ 1382 (1394)
T TIGR00956 1304 KVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIA 1382 (1394)
T ss_pred CccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHH
Confidence 31 367889999999999999999999999999999998 899
Q ss_pred HHHHHhhhhccC
Q psy13765 595 YFFLSWRIKVMR 606 (606)
Q Consensus 595 ~~~L~~~~~~~r 606 (606)
+++|+|+.|.++
T Consensus 1383 ~~~l~~~~r~~k 1394 (1394)
T TIGR00956 1383 TVFFYWLARVPK 1394 (1394)
T ss_pred HHhhheEEEcCC
Confidence 999999877664
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.8e-93 Score=868.60 Aligned_cols=574 Identities=19% Similarity=0.315 Sum_probs=476.6
Q ss_pred CceEEEEEeeEEEEecCC-----c-------------------ccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHH
Q psy13765 25 DRIEIKFKDLTYTVSTGL-----G-------------------FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLD 80 (606)
Q Consensus 25 ~~~~l~~~nl~~~~~~~~-----~-------------------~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~ 80 (606)
..+.+.|+||+++..... + .++.++++|+|||+++++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 368899999998863211 0 0123367999999999999999999999999999999
Q ss_pred HHhCCCC---CCCccEEEECCccCCh--hhhcccEEEEccCCCCCCCCcHHHHHHHc-CCccccCCccccCChHHH-HHH
Q psy13765 81 VLSGYRS---NGVTGQILTNGHSRNI--NAFRRVSCYIQQDDRLQPLLTIENVMSLL-GLDESQNTRSSQLSGGQK-KRL 153 (606)
Q Consensus 81 ~L~g~~~---~~~~G~I~~~G~~~~~--~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgGqr-qRv 153 (606)
+|+|+.. .+.+|+|.+||++.+. ..+++.++||+|+|.+++.+||.|.+... .+.. ......+++.-|+ +++
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~-~~~~~~~~~~~~~~~~~ 184 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKT-PQNRPDGVSREEYAKHI 184 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCC-CCCCCCCCCHHHHHHHH
Confidence 9999863 2368999999987532 34566799999999999999999887652 1111 0111123444443 232
Q ss_pred -HHHHHHhc---CCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Q psy13765 154 -SIALELIN---NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTII 228 (606)
Q Consensus 154 -~ia~~L~~---~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii 228 (606)
....+.+. ..+-.+.|+...++||||||||+||++|+++|+|++|||||+|||+.++.++++.|++++++ |+|||
T Consensus 185 ~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvi 264 (1394)
T TIGR00956 185 ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPL 264 (1394)
T ss_pred HHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 22233222 22334677888999999999999999999999999999999999999999999999999875 99999
Q ss_pred EEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHHHHhCCCCCCCCCChHHHHHHHhcCCcC----------cccHHH
Q psy13765 229 CTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYG----------VDNINA 298 (606)
Q Consensus 229 ~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~~~~~~~~~----------~~~~~~ 298 (606)
+++|||+.+++++||++++|++|+++++|+++++.+||+++|++||++.|||||++++++.+.. ....++
T Consensus 265 i~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~ 344 (1394)
T TIGR00956 265 VAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQE 344 (1394)
T ss_pred EEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccccccccCCCCHHH
Confidence 9999998889999999999999999999999999999999999999999999999998865321 011233
Q ss_pred HHHHHhcCCCCc----------cc---ccc--------ccccc--ccCccccCCChHHHHHHHHHHHHHHhhcChhHHHH
Q psy13765 299 MVEQAQNDVKPD----------KK---TKK--------TKHCT--YSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHL 355 (606)
Q Consensus 299 ~~~~~~~~~~~~----------~~---~~~--------~~~~~--~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~ 355 (606)
+.+.++++...+ .. ... ....+ ......+..|+|+|+++|++|++++.+|||.++.+
T Consensus 345 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~ 424 (1394)
T TIGR00956 345 FETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLF 424 (1394)
T ss_pred HHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 333333322100 00 000 00000 11233577899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhheecccCCCcchHHHHHHHHHH
Q psy13765 356 RIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLL 435 (606)
Q Consensus 356 r~~~~i~~all~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~ 435 (606)
|+++++++|+++|++||++++++.+++++.|++||++++.+++++. .+..+..||+||+||+.+++|++++|++|++++
T Consensus 425 r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~-~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~ 503 (1394)
T TIGR00956 425 MVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLL-EIASMYEARPIVEKHRKYALYHPSADAIASIIS 503 (1394)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCcceeeeccccccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998864 456666899999999999999999999999999
Q ss_pred HhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhccccchh-HHHHHHHHHHHHHHhcccccC
Q psy13765 436 DIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVN-GTFVGPVLVVPMMMFSGFGVS 514 (606)
Q Consensus 436 elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~~~~~~-a~~~~~~~~~~~~lf~G~~i~ 514 (606)
|+|+.++.+++|++|+|||+|+++++.+||+|+++++++.+++.++++++|+++++.. |+.+++++++++++|+||+++
T Consensus 504 ~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~ 583 (1394)
T TIGR00956 504 EIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIP 583 (1394)
T ss_pred HHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccC
Confidence 9999999999999999999999999999999999999999999999999999987655 999999999999999999999
Q ss_pred CCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccC---------------CCccc---------cCChhHHHh-hc
Q psy13765 515 INDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCD---------------ELYCH---------YKEPKKFLQ-TV 569 (606)
Q Consensus 515 ~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~---------------~~~c~---------~~~g~~~L~-~~ 569 (606)
.++||+||+|++|+||++|+|||++.|||.. .+++|+ +..|. +.+|+++|+ .+
T Consensus 584 ~~~mp~~~~W~~yisp~~yafeal~~nef~~--~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~ 661 (1394)
T TIGR00956 584 RPSMLGWSKWIYYVNPLAYAFESLMVNEFHG--RRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSF 661 (1394)
T ss_pred hhhccHHHHHHHHcCHHHHHHHHHHHhhhcC--CcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcC
Confidence 9999999999999999999999999999973 356784 12473 458999998 68
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHHHHHHHHhhh
Q psy13765 570 SQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRI 602 (606)
Q Consensus 570 ~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~ 602 (606)
+++.+++|+|++||++++++|++++++++.+..
T Consensus 662 ~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 662 QYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999998865
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.6e-91 Score=849.26 Aligned_cols=575 Identities=20% Similarity=0.310 Sum_probs=469.9
Q ss_pred CceEEEEEeeEEEEecCC------c--------------------ccccccccceeeeEEEeCCeEEEEECCCCCCHHHH
Q psy13765 25 DRIEIKFKDLTYTVSTGL------G--------------------FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSL 78 (606)
Q Consensus 25 ~~~~l~~~nl~~~~~~~~------~--------------------~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTL 78 (606)
+.+.++|+||++.-.... + .++.++++|+|||+.++|||+++|+||||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL 207 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL 207 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence 467899999998764110 0 01234679999999999999999999999999999
Q ss_pred HHHHhCCCCCC--CccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcC-CccccCC--ccccCChHHHH--
Q psy13765 79 LDVLSGYRSNG--VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLG-LDESQNT--RSSQLSGGQKK-- 151 (606)
Q Consensus 79 L~~L~g~~~~~--~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~g-l~~~~~~--~~~~lSgGqrq-- 151 (606)
||+|+|+.++. .+|+|.+||++.+....++.++||+|+|.+++.+||.|.+.... +...... ...+++..|++
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 99999997652 48999999987654334678999999999999999998887531 1110000 01122222221
Q ss_pred -----------------------HHHHHHHHhc---CCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC
Q psy13765 152 -----------------------RLSIALELIN---NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205 (606)
Q Consensus 152 -----------------------Rv~ia~~L~~---~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL 205 (606)
++....+.+. ..+..+.|+...++||||||||+||++|+.+|++++|||||+||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 1121222222 22445778899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHHHHhCCCCCCCCCChHHHHH
Q psy13765 206 DSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVI 284 (606)
Q Consensus 206 D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~ 284 (606)
|+.++.++++.|+++++ .|+|+|+++|||+++++++||+|++|++|+++|+|+++++.+||+++|++||++.|||||++
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~ 447 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQ 447 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 99999999999999987 58999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcCc------------ccHHHHHHHHhcCCCCccc-cc-------ccccccccCccccCCChHHHHHHHHHHHHH
Q psy13765 285 ELASGEYGV------------DNINAMVEQAQNDVKPDKK-TK-------KTKHCTYSNQILQDTSYSNQLGVLLSRGLL 344 (606)
Q Consensus 285 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~ 344 (606)
++++.+... ...+++.++++++...... .+ ...+........+..+++.|++.|++|+++
T Consensus 448 ~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~ 527 (1470)
T PLN03140 448 EVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWL 527 (1470)
T ss_pred HhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHH
Confidence 998753220 0123344444433211000 00 000000112344788999999999999999
Q ss_pred HhhcChhHHHHHHHHHHHHHHHHHHhhcCCCCCh---HHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhheecccCC
Q psy13765 345 KVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYA---SSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNR 421 (606)
Q Consensus 345 ~~~Rd~~~~~~r~~~~i~~all~G~~f~~~~~~~---~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~ 421 (606)
+++||+..+..|+++.+++|+++|++||+++.++ .+.+.+.|.+||++++.++.++ +.+..++.||+||+||+.++
T Consensus 528 ~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~-~~l~~~~~~r~vf~ker~~~ 606 (1470)
T PLN03140 528 LMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGF-AELALMIQRLPVFYKQRDLL 606 (1470)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHhhhcc
Confidence 9999999999999999999999999999997542 3356678999999888888775 66888889999999999999
Q ss_pred CcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhccccchh-HHHHHHH
Q psy13765 422 WYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVN-GTFVGPV 500 (606)
Q Consensus 422 ~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~~~~~~-a~~~~~~ 500 (606)
+|++++|++|++++|+|+.++.+++|++|+|||+|+++++++||+|+++++++.+++.++++++++++++.. |+.++++
T Consensus 607 ~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~ 686 (1470)
T PLN03140 607 FHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGAL 686 (1470)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987655 9999999
Q ss_pred HHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcc-cccCCCccccCChhHHHhhcCCCCC--Chh
Q psy13765 501 LVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKT-LQCDELYCHYKEPKKFLQTVSQPSD--NFW 577 (606)
Q Consensus 501 ~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~-~~c~~~~c~~~~g~~~L~~~~~~~~--~~w 577 (606)
+++++++|+||+++.++||+||+|++|+||++||+||++.|||...... ..|... ....|+++|+.+|+..+ ++|
T Consensus 687 ~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~--~~~~G~~~L~~~g~~~~~~~~w 764 (1470)
T PLN03140 687 VLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDN--STRLGTAVLNIFDVFTDKNWYW 764 (1470)
T ss_pred HHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCC--CcccHHHHHHhcCcCccccchh
Confidence 9999999999999999999999999999999999999999999643321 122211 24689999999999754 569
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Q psy13765 578 SSSVTLVFILIVMKLIAYFFLSWRI 602 (606)
Q Consensus 578 ~~~~il~~~~~~~~~~~~~~L~~~~ 602 (606)
+++++|++++++|+++++++|++..
T Consensus 765 ~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 765 IGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998765
No 8
>KOG0065|consensus
Probab=100.00 E-value=1.9e-90 Score=794.83 Aligned_cols=564 Identities=25% Similarity=0.411 Sum_probs=458.0
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CccEEEECCccCChhhhc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG-VTGQILTNGHSRNINAFR 107 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~-~~G~I~~~G~~~~~~~~~ 107 (606)
..|+|+.|+.+. +.+++++|+|||+.++||.++||||+||||||||||+|+|+...+ .+|+|++||.+.+.+.++
T Consensus 788 ~~w~dl~~~~~~----qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 788 FYWVDLPYEMPI----QGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFA 863 (1391)
T ss_pred EEEEeCCccccc----cccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhc
Confidence 344555555432 346788999999999999999999999999999999999997654 699999999998878999
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHH-HHHHHHHHHhcCCcc--cccCCCCCCCCchhhhHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK-KRLSIALELINNPRV--MFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~--~~~de~~~~~s~g~~krl~ 184 (606)
|.+|||.|+|.|.+.+||+|-|..- ..-+.+.+.+-+|| ..|.--.+++.-.++ -+-..|..+||.+|||||.
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fS----A~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLT 939 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFS----AALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLT 939 (1391)
T ss_pred cccceeecccccCcccchHHHHHHH----HHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceee
Confidence 9999999999999999998877652 22234566777887 667666666655433 1334455889999999999
Q ss_pred HHHhhhcCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec-CCcEEEEcChh--
Q psy13765 185 IALELINNP-RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS-GGQCLYQGATD-- 260 (606)
Q Consensus 185 IA~aL~~~P-~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~-~G~~~~~G~~~-- 260 (606)
||.+|+.|| .||||||||||||++++..+++.+|+++++|+||+||+|||+..+++.||++++|+ +|+++|.|+..
T Consensus 940 IgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen 940 IGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred EEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence 999999999 89999999999999999999999999999999999999999999999999999996 69999999985
Q ss_pred --HHHHHHHhCC-CCCCCCCChHHHHHHHhcCCcCcccHHHHHHHHhcCCCCcccccccc---------cccccCccccC
Q psy13765 261 --QLVNYLSSVN-LPCPKYHNPADFVIELASGEYGVDNINAMVEQAQNDVKPDKKTKKTK---------HCTYSNQILQD 328 (606)
Q Consensus 261 --~~~~~f~~~g-~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 328 (606)
.+++||+++| .+||+..|||||++|+++...+.....+..+.|+++...+...+..+ ..+...+..++
T Consensus 1020 s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa 1099 (1391)
T KOG0065|consen 1020 SSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFA 1099 (1391)
T ss_pred cHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccc
Confidence 4677999988 79999999999999999765443222334445554433211111000 00112345688
Q ss_pred CChHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13765 329 TSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFP 408 (606)
Q Consensus 329 ~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~ 408 (606)
.|+|.|++.+++|++..+||+|.++.+|++..++.|+++|+.||+.|++.+++++..|.+|+.+++...+........+.
T Consensus 1100 ~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~ 1179 (1391)
T KOG0065|consen 1100 QSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVA 1179 (1391)
T ss_pred hhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999887766554434566777
Q ss_pred hhhhhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhcc
Q psy13765 409 MEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAV 488 (606)
Q Consensus 409 ~er~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~ 488 (606)
.||.+++||+++|+|++.+|++|++++|+|+.++++++|.+|+|+++|+..++.+|++|++.++++.++...+|+++.++
T Consensus 1180 ~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~ 1259 (1391)
T KOG0065|consen 1180 TERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSL 1259 (1391)
T ss_pred hhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-hhHHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccCC-------CccccC
Q psy13765 489 FNV-VNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDE-------LYCHYK 560 (606)
Q Consensus 489 ~~~-~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~-------~~c~~~ 560 (606)
+|. +.|..+.++++..+.+|||+++|++.||.||+|+||+||+.|-+++++..+++ +.+..|.. .+|..+
T Consensus 1260 tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~--d~~v~c~~~e~~~~~pp~g~t 1337 (1391)
T KOG0065|consen 1260 TPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLG--DVEVTCEDSEMNYFDPPSGQT 1337 (1391)
T ss_pred CCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhC--CCceeeecCCccccCCCCCcC
Confidence 765 55999999999999999999999999999999999999999999999999997 33456641 123333
Q ss_pred ChhHHHhhcC----CCCCChhhhHHHHHHHHHHHHHHHHHHHHhhh
Q psy13765 561 EPKKFLQTVS----QPSDNFWSSSVTLVFILIVMKLIAYFFLSWRI 602 (606)
Q Consensus 561 ~g~~~L~~~~----~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~ 602 (606)
-|+.+-..+| +.++..-....+...+.+++.+++.+..++..
T Consensus 1338 cge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~ 1383 (1391)
T KOG0065|consen 1338 CGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLN 1383 (1391)
T ss_pred HHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHH
Confidence 3444444455 33333333333444455555555555444443
No 9
>KOG0065|consensus
Probab=100.00 E-value=1.5e-80 Score=713.22 Aligned_cols=551 Identities=23% Similarity=0.365 Sum_probs=463.9
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHH
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIE 126 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~ 126 (606)
.++|+|+|+-++|||++.++||+||||||||++|+|-.+. ...|+|.+||++.+...-++.++|.+|+|.|+|.+||.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4799999999999999999999999999999999997643 23689999998765433378899999999999999998
Q ss_pred HHHHHcCCccccCCccccCChHHHHH-----HHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC
Q psy13765 127 NVMSLLGLDESQNTRSSQLSGGQKKR-----LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201 (606)
Q Consensus 127 ~~l~~~gl~~~~~~~~~~lSgGqrqR-----v~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP 201 (606)
+.++...--.-...++.+++.-|+.+ +.--..|-...|.++.|+-.+++||||||||+||.+++.+|+++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 88876543222233344555555543 1111223345566788888888999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHHHHhCCCCCCCCCChH
Q psy13765 202 TTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPA 280 (606)
Q Consensus 202 TsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~a 280 (606)
|+|||+.++.++++.||++++. +.|.+++.|||+++++++||+|++|.+|+++|+||.+++++||+++|+.||++.++|
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~A 367 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTA 367 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHH
Confidence 9999999999999999999884 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcCcc------------cHHHHHHHHhcCCCCcccc-----ccccc---ccccCccccCCChHHHHHHHHH
Q psy13765 281 DFVIELASGEYGVD------------NINAMVEQAQNDVKPDKKT-----KKTKH---CTYSNQILQDTSYSNQLGVLLS 340 (606)
Q Consensus 281 d~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~s~~~q~~~l~~ 340 (606)
||+.++++...... ...++.+.+.++..-.... +..++ ........+..+.|.|++.|++
T Consensus 368 DfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~ 447 (1391)
T KOG0065|consen 368 DFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTI 447 (1391)
T ss_pred HHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHH
Confidence 99999998322110 0123333443332211100 00000 0111345688999999999999
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcCCC-CChHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhheeccc
Q psy13765 341 RGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSG-EYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHF 419 (606)
Q Consensus 341 R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f~~~~-~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~ 419 (606)
|.++.+.||..++..+.++.+++|+++|++|++.+ ++..+...+.|++||.+++..+.++ +.+....+.||||+|||.
T Consensus 448 R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~l-aEi~~~~~~~pv~~Khr~ 526 (1391)
T KOG0065|consen 448 REFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGL-AEIALTFQRLPVFYKHRD 526 (1391)
T ss_pred HHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhH-HHHHHHHhhcchHHHhhc
Confidence 99999999999999999999999999999999999 7788889999999999999999886 455555589999999999
Q ss_pred CCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhccccchh-HHHHH
Q psy13765 420 NRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVN-GTFVG 498 (606)
Q Consensus 420 ~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~~~~~~-a~~~~ 498 (606)
..+|+++||.++.++.++|..++.+++|.+|+||++|+.+++++||.++++++++.+++.++++++++++++.. |+.++
T Consensus 527 ~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g 606 (1391)
T KOG0065|consen 527 LSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIG 606 (1391)
T ss_pred ccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998765 99999
Q ss_pred HHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccC------------CCccccC---Chh
Q psy13765 499 PVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCD------------ELYCHYK---EPK 563 (606)
Q Consensus 499 ~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~------------~~~c~~~---~g~ 563 (606)
++.++.+.+++||+||.++||+||+|++|+||+.||+|+++.|||.. ...+|. ...|... .|.
T Consensus 607 ~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~--~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~ 684 (1391)
T KOG0065|consen 607 GILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHG--RRWPCSPSGPAYDNISIENKVCAATGATLGN 684 (1391)
T ss_pred HHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhc--ccCCCCCCCCcccccccccccchhhccccCc
Confidence 99999999999999999999999999999999999999999999984 347786 3457432 344
Q ss_pred HHHh-------hcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhhh
Q psy13765 564 KFLQ-------TVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRI 602 (606)
Q Consensus 564 ~~L~-------~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~ 602 (606)
++++ .|+++..++|++++|++||.++|.++..+++.+..
T Consensus 685 ~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 685 DYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred eEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 4444 35556889999999999999999999999887654
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-50 Score=388.72 Aligned_cols=208 Identities=30% Similarity=0.539 Sum_probs=180.1
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC----Ch
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR----NI 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~----~~ 103 (606)
.|+++||+++| +...+|+|||++|++||+++|+|||||||||||+||.++..+ .+|+|.++|... +.
T Consensus 2 mi~i~~l~K~f--------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~-~~G~I~i~g~~~~~~~~~ 72 (240)
T COG1126 2 MIEIKNLSKSF--------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP-DSGSITVDGEDVGDKKDI 72 (240)
T ss_pred eEEEEeeeEEe--------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC-CCceEEECCEeccchhhH
Confidence 58999999997 567899999999999999999999999999999999999877 599999999644 34
Q ss_pred hhhcccEEEEccCCCCCCCCcH-----------------------HHHHHHcCCccccCCccccCChHHHHHHHHHHHHh
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTI-----------------------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELI 160 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv-----------------------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~ 160 (606)
..+|+.+|+|||+..|||.+|| .++|+.+||.+.++.++.+|||||||||+|||||+
T Consensus 73 ~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALa 152 (240)
T COG1126 73 LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA 152 (240)
T ss_pred HHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHc
Confidence 6788999999999999999997 34566677777777778888888877777555555
Q ss_pred cCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q psy13765 161 NNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ 240 (606)
Q Consensus 161 ~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~ 240 (606)
.+ |+++++|||||+|||+...++.+.+++|+++|.|.|++||+.. .+.+
T Consensus 153 M~------------------------------P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~ 201 (240)
T COG1126 153 MD------------------------------PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FARE 201 (240)
T ss_pred CC------------------------------CCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHH
Confidence 55 9999999999999999999999999999999999999999987 4779
Q ss_pred hcceeeeecCCcEEEEcChhHHHHHHHhCCCCCCCCCChHHHH
Q psy13765 241 MFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFV 283 (606)
Q Consensus 241 ~~D~v~~L~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~ad~~ 283 (606)
.+|||++|++|+++..|+|+++.. .|.+....+|+
T Consensus 202 VadrviFmd~G~iie~g~p~~~f~--------~p~~~R~~~FL 236 (240)
T COG1126 202 VADRVIFMDQGKIIEEGPPEEFFD--------NPKSERTRQFL 236 (240)
T ss_pred hhheEEEeeCCEEEEecCHHHHhc--------CCCCHHHHHHH
Confidence 999999999999999999988743 45544445554
No 11
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.8e-47 Score=380.07 Aligned_cols=223 Identities=24% Similarity=0.419 Sum_probs=183.8
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~ 104 (606)
.++++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++. +.+
T Consensus 2 ~L~~~~ls~~y--------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p-~~G~V~l~g~~i~~~~~k 72 (258)
T COG1120 2 MLEVENLSFGY--------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP-KSGEVLLDGKDIASLSPK 72 (258)
T ss_pred eeEEEEEEEEE--------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCCchhhcCHH
Confidence 58899999997 467899999999999999999999999999999999999887 599999999864 457
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~ 184 (606)
++.+.++||||.+...+.+||.|+... |.....+... ..|.-.++.+.-|.+.+.-. -+.|.+...||||||||+.
T Consensus 73 elAk~ia~vpQ~~~~~~~~tV~d~V~~-GR~p~~~~~~-~~~~~D~~~v~~aL~~~~~~--~la~r~~~~LSGGerQrv~ 148 (258)
T COG1120 73 ELAKKLAYVPQSPSAPFGLTVYELVLL-GRYPHLGLFG-RPSKEDEEIVEEALELLGLE--HLADRPVDELSGGERQRVL 148 (258)
T ss_pred HHhhhEEEeccCCCCCCCcEEeehHhh-cCCccccccc-CCCHhHHHHHHHHHHHhCcH--HHhcCcccccChhHHHHHH
Confidence 788999999999988888998776543 4333222221 33444444444344333321 2567778888888888888
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
|||||+++|++|+||||||.||...+.+++++++++++ +|+|||+++||++. ..++||++++|++|+++..|+|++++
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecCcchhc
Confidence 88888999999999999999999999999999999996 59999999999985 67999999999999999999998876
Q ss_pred H
Q psy13765 264 N 264 (606)
Q Consensus 264 ~ 264 (606)
.
T Consensus 228 T 228 (258)
T COG1120 228 T 228 (258)
T ss_pred C
Confidence 3
No 12
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-46 Score=374.20 Aligned_cols=202 Identities=28% Similarity=0.484 Sum_probs=171.0
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----- 102 (606)
.|+++||++.|..+ +.+...+|+|||++|++||+++|+|.||||||||++++.++..| .+|+|.+||.+..
T Consensus 1 mI~l~~vsK~~~~~---~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P-tsG~v~v~G~di~~l~~~ 76 (339)
T COG1135 1 MIELENVSKTFGQT---GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP-TSGSVFVDGQDLTALSEA 76 (339)
T ss_pred CeEEEeeeeeeccC---CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCceEEEcCEecccCChH
Confidence 37899999998542 12345799999999999999999999999999999999999887 5999999996532
Q ss_pred -hhhhcccEEEEccCCCCCCCCcH----------------------HHHHHHcCCccccCCccccCChHHHHHHHHHHHH
Q psy13765 103 -INAFRRVSCYIQQDDRLQPLLTI----------------------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL 159 (606)
Q Consensus 103 -~~~~~~~~~yv~Q~~~l~~~ltv----------------------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L 159 (606)
...+|+.||++||+..|....|| .++++.+||.+..++++.+|||||||||+|||||
T Consensus 77 ~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL 156 (339)
T COG1135 77 ELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 156 (339)
T ss_pred HHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHH
Confidence 35678999999999999998887 3455566666666666666666666666655555
Q ss_pred hcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHH
Q psy13765 160 INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATL 238 (606)
Q Consensus 160 ~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i 238 (606)
+ .+|+||++|||||+|||.+...|+++|+++.++ |.||+++||+++ -+
T Consensus 157 a------------------------------~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vv 205 (339)
T COG1135 157 A------------------------------NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VV 205 (339)
T ss_pred h------------------------------cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HH
Confidence 4 559999999999999999999999999999876 999999999987 58
Q ss_pred HhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 239 FQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 239 ~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
.++||||.+|++|++++.|+..++..
T Consensus 206 k~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 206 KRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred HHHhhhheEeeCCEEEEeccHHHhhc
Confidence 89999999999999999999988753
No 13
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.9e-46 Score=369.42 Aligned_cols=223 Identities=26% Similarity=0.406 Sum_probs=178.4
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~ 106 (606)
..|+++|++++|. .+++|+|||+++++|++++|+||||||||||+|+|.|+++| .+|+|.++|++.....-
T Consensus 3 ~~i~v~nl~v~y~--------~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p-~~G~i~~~g~~~~~~~~ 73 (254)
T COG1121 3 PMIEVENLTVSYG--------NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP-SSGEIKIFGKPVRKRRK 73 (254)
T ss_pred cEEEEeeeEEEEC--------CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC-CcceEEEcccccccccc
Confidence 4689999999983 22699999999999999999999999999999999998887 59999999987654333
Q ss_pred cccEEEEccCCCCC--CCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765 107 RRVSCYIQQDDRLQ--PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~--~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~ 184 (606)
+..||||||...+. .-+||++++.. |.... ....+.++..+++++.-|.+.+.-- -+.|.+.+.|||||+||+-
T Consensus 74 ~~~IgYVPQ~~~~d~~fP~tV~d~V~~-g~~~~-~g~~~~~~~~d~~~v~~aL~~Vgm~--~~~~r~i~~LSGGQ~QRV~ 149 (254)
T COG1121 74 RLRIGYVPQKSSVDRSFPITVKDVVLL-GRYGK-KGWFRRLNKKDKEKVDEALERVGME--DLRDRQIGELSGGQKQRVL 149 (254)
T ss_pred CCeEEEcCcccccCCCCCcCHHHHHHc-cCccc-ccccccccHHHHHHHHHHHHHcCch--hhhCCcccccCcHHHHHHH
Confidence 57899999965332 22578776654 21111 1112335666667666555554432 2567777788888888888
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
|||||+++|++|+|||||+|+|+.++..++++|++++++|+||++++||+. .+.+.||+|+.|+ +++++.|+++++.+
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 888888889999999999999999999999999999999999999999988 5789999999995 67899999988754
No 14
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-46 Score=362.87 Aligned_cols=197 Identities=25% Similarity=0.494 Sum_probs=171.7
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~ 104 (606)
.|+++||+++| +++.+++|+|++|++||++.++|||||||||+||+|.++..| .+|+|++||++. +..
T Consensus 1 MI~~~nvsk~y--------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep-t~G~I~i~g~~i~~~d~~ 71 (309)
T COG1125 1 MIEFENVSKRY--------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP-TSGEILIDGEDISDLDPV 71 (309)
T ss_pred Cceeeeeehhc--------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC-CCceEEECCeecccCCHH
Confidence 37899999987 467899999999999999999999999999999999999887 599999999865 356
Q ss_pred hhcccEEEEccCCCCCCCCcH----------------------HHHHHHcCCcc--ccCCccccCChHHHHHHHHHHHHh
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTI----------------------ENVMSLLGLDE--SQNTRSSQLSGGQKKRLSIALELI 160 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv----------------------~~~l~~~gl~~--~~~~~~~~lSgGqrqRv~ia~~L~ 160 (606)
++|+.+|||-|...|||++|| +|+++.+||+. ..++++.+|||||+|||.+||||+
T Consensus 72 ~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred HHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 789999999999999999998 44555666653 566666666666666666555555
Q ss_pred cCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHH
Q psy13765 161 NNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLF 239 (606)
Q Consensus 161 ~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~ 239 (606)
.+|++|++|||+++|||-++.++.+.++++.++ |+|||++|||.+ +.+
T Consensus 152 ------------------------------adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~ 200 (309)
T COG1125 152 ------------------------------ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EAL 200 (309)
T ss_pred ------------------------------cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHH
Confidence 459999999999999999999999999999886 999999999987 567
Q ss_pred hhcceeeeecCCcEEEEcChhHHHH
Q psy13765 240 QMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 240 ~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
+++|||.+|++|+++..++|+++..
T Consensus 201 kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 201 KLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred hhhceEEEecCCeEEEeCCHHHHHh
Confidence 9999999999999999999999865
No 15
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2e-45 Score=381.65 Aligned_cols=223 Identities=28% Similarity=0.460 Sum_probs=181.9
Q ss_pred EEEEEeeEEEEecCCccccc-ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--h
Q psy13765 28 EIKFKDLTYTVSTGLGFKQE-PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--N 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--~ 104 (606)
.++++||+++| + .+.+|+||||++++||++|++||||||||||+|+|+|+..| .+|+|.++|.+... .
T Consensus 4 ~i~~~~l~k~~--------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p-~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 4 VIEVRNLTKKY--------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP-TSGEILVLGYDVVKEPA 74 (293)
T ss_pred eeeecceEEEe--------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEEcCEeCccCHH
Confidence 57889999997 4 47899999999999999999999999999999999999887 59999999986543 5
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl 183 (606)
+.++.+||++|++.+++.+|+.|.++.+.-- ...+. -.++|+.-..+.+.-++ ..+.+...+|+||||||
T Consensus 75 ~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l-------~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~lS~G~kqrl 145 (293)
T COG1131 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARL-------YGLSKEEAEERIEELLELFGLED--KANKKVRTLSGGMKQRL 145 (293)
T ss_pred HHHhheEEEccCCCCCccccHHHHHHHHHHH-------hCCChhHHHHHHHHHHHHcCCch--hhCcchhhcCHHHHHHH
Confidence 7788999999999999999997777653211 11111 12334444444444333 12566667777777777
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG-RTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g-~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
.||+||+++|+++||||||+||||.++.++.++|++++++| +||+++||+++ ++..+||+|++|++|++++.|+++++
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 77777777899999999999999999999999999999987 89999999987 57889999999999999999999998
Q ss_pred HHHHHhC
Q psy13765 263 VNYLSSV 269 (606)
Q Consensus 263 ~~~f~~~ 269 (606)
...+...
T Consensus 225 ~~~~~~~ 231 (293)
T COG1131 225 KEKFGGK 231 (293)
T ss_pred HHhhccC
Confidence 7765543
No 16
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-45 Score=358.19 Aligned_cols=226 Identities=30% Similarity=0.463 Sum_probs=183.3
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---- 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---- 102 (606)
..|+++||++.|+ +++++|+|||++|++||+++|+|||||||||||++|+|+..+ .+|+|.+||.+..
T Consensus 2 ~~i~~~nl~k~yp-------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~-t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 2 MMIEVKNLSKTYP-------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP-TSGEILFNGVQITKLKG 73 (258)
T ss_pred ceEEEeeeeeecC-------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC-CcceEEecccchhccch
Confidence 4699999999985 457899999999999999999999999999999999998776 5999999996432
Q ss_pred --hhhhcccEEEEccCCCCCCCCcH-HHHHH-HcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCc
Q psy13765 103 --INAFRRVSCYIQQDDRLQPLLTI-ENVMS-LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPN 177 (606)
Q Consensus 103 --~~~~~~~~~yv~Q~~~l~~~ltv-~~~l~-~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~ 177 (606)
.+++|+.+||++|++.+.+.++| ++++. .+|-........+-+|.-||++.-=|.+ +-+++ ..-.+...|||
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLe---rvgi~~~A~qra~~LSG 150 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALE---RVGILDKAYQRASTLSG 150 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHH---HcCcHHHHHHHhccCCc
Confidence 35678899999999999999998 44432 2333333333344467777665433322 22222 22345667888
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~ 256 (606)
||+|||+|||||+++|++++.|||++.|||.++..+|+.|+++++ +|.|||++.||.+. +.++|||++-|++|+++|+
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecCCcEEEe
Confidence 888888888888889999999999999999999999999999987 59999999999874 6799999999999999999
Q ss_pred cChhHHHH
Q psy13765 257 GATDQLVN 264 (606)
Q Consensus 257 G~~~~~~~ 264 (606)
|+++++.+
T Consensus 230 g~~~el~~ 237 (258)
T COG3638 230 GPASELTD 237 (258)
T ss_pred CChhhhhH
Confidence 99988654
No 17
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.2e-45 Score=355.99 Aligned_cols=199 Identities=29% Similarity=0.498 Sum_probs=173.9
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--- 102 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--- 102 (606)
...|++++|++++ +.+.+++|||++|++||+++||||||+|||||||+|.|+.+| .+|+|.++|++..
T Consensus 6 ~~~I~vr~v~~~f--------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P-~~GeI~i~G~~i~~ls 76 (263)
T COG1127 6 EPLIEVRGVTKSF--------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP-DKGEILIDGEDIPQLS 76 (263)
T ss_pred cceEEEeeeeeec--------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC-CCCeEEEcCcchhccC
Confidence 4679999999986 678999999999999999999999999999999999999987 5999999998642
Q ss_pred ---hhhhcccEEEEccCCCCCCCCcHHHH-----------------------HHHcCCccc-cCCccccCChHHHHHHHH
Q psy13765 103 ---INAFRRVSCYIQQDDRLQPLLTIENV-----------------------MSLLGLDES-QNTRSSQLSGGQKKRLSI 155 (606)
Q Consensus 103 ---~~~~~~~~~yv~Q~~~l~~~ltv~~~-----------------------l~~~gl~~~-~~~~~~~lSgGqrqRv~i 155 (606)
..+.++++|++||+-.||..+||.|. ++.+||... .+..+.+|||||+||+++
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHH
Confidence 23567899999999999999998322 344577666 677777778887777776
Q ss_pred HHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCC
Q psy13765 156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQP 234 (606)
Q Consensus 156 a~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~ 234 (606)
|||++.+ |++||+||||+||||.++..+.+++++++++ |.|++++|||.
T Consensus 157 ARAiald------------------------------Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl 206 (263)
T COG1127 157 ARAIALD------------------------------PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL 206 (263)
T ss_pred HHHHhcC------------------------------CCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh
Confidence 6555555 9999999999999999999999999999986 99999999998
Q ss_pred chHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 235 SATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 235 ~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
. +++..|||+++|.+|+++..|+++++.+
T Consensus 207 ~-s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 207 D-SLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred H-HHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 7 5889999999999999999999999865
No 18
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.6e-44 Score=355.84 Aligned_cols=209 Identities=32% Similarity=0.530 Sum_probs=160.2
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC------
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN------ 102 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~------ 102 (606)
++++||++.|..+ .....+|++||++|++||+++|+||||||||||||+|.|+..| .+|+|.++|++..
T Consensus 2 i~~~~v~k~y~~~----~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p-t~G~v~i~g~d~~~l~~~~ 76 (226)
T COG1136 2 IELKNVSKIYGLG----GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP-TSGEVLINGKDLTKLSEKE 76 (226)
T ss_pred cEEeeeEEEeccC----CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECCEEcCcCCHHH
Confidence 5689999988543 1235799999999999999999999999999999999999887 6999999997543
Q ss_pred hhhhc-ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCCCchh
Q psy13765 103 INAFR-RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQ 179 (606)
Q Consensus 103 ~~~~~-~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~s~g~ 179 (606)
...+| +.+|||+|+..|.|.+|+.|.+..-- .....+.+++++. +.+|+..-.+- ..+.++..|||||
T Consensus 77 ~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl-------~~~~~~~~~~~~~--~~~l~~~lgl~~~~~~~~p~eLSGGq 147 (226)
T COG1136 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPL-------LIAGKSAGRRKRA--AEELLEVLGLEDRLLKKKPSELSGGQ 147 (226)
T ss_pred HHHHHHHhEEEECccCCCCCCCCHHHHHHhHH-------HHcCCChhHHHHH--HHHHHHhcCChhhhccCCchhcCHHH
Confidence 13344 56999999999999999965544200 0111222222221 22222222221 2225666677777
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
||||+|||||+.+|++|+.||||.+||+.++.++++++++++++ |+|||++|||+. +...|||++.|++|++
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 77777777777789999999999999999999999999999875 999999999975 5689999999999983
No 19
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-44 Score=353.80 Aligned_cols=182 Identities=27% Similarity=0.482 Sum_probs=155.5
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR 107 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~ 107 (606)
.+++++++++| +...+|+|+|++|++||+++|+||||||||||||+|+|+.++ .+|+|.++|++. ..-.
T Consensus 3 ~l~i~~v~~~f--------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p-~~G~V~~~g~~v--~~p~ 71 (248)
T COG1116 3 LLEIEGVSKSF--------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP-TSGEVLLDGRPV--TGPG 71 (248)
T ss_pred eEEEEeeEEEe--------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCccc--CCCC
Confidence 58899999987 347899999999999999999999999999999999999887 599999999876 3446
Q ss_pred ccEEEEccCCCCCCCCcH----------------------HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc
Q psy13765 108 RVSCYIQQDDRLQPLLTI----------------------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV 165 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv----------------------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~ 165 (606)
..++||||++.++|.+|| ++.++.+||.+..++++++|||||||||+|||||+.
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~---- 147 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALAT---- 147 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhc----
Confidence 789999999999999997 344555666666666666666666666665555554
Q ss_pred cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcce
Q psy13765 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQ 244 (606)
Q Consensus 166 ~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~ 244 (606)
+|++|+||||++.||+.|+..+.+.|.++.+ +++||+++|||.++ ...++||
T Consensus 148 --------------------------~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~E-Av~LsdR 200 (248)
T COG1116 148 --------------------------RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDE-AVYLADR 200 (248)
T ss_pred --------------------------CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHhhhCE
Confidence 4999999999999999999999999999876 48999999999885 5689999
Q ss_pred eeeecCC
Q psy13765 245 VYLLSGG 251 (606)
Q Consensus 245 v~~L~~G 251 (606)
|++|+++
T Consensus 201 ivvl~~~ 207 (248)
T COG1116 201 VVVLSNR 207 (248)
T ss_pred EEEecCC
Confidence 9999984
No 20
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-44 Score=349.31 Aligned_cols=223 Identities=29% Similarity=0.452 Sum_probs=182.7
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--- 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--- 103 (606)
..++++||++.|+.+. ...++|+|||++|++||+++|+|+||||||||.++|+|+.++ .+|+|.++|++...
T Consensus 2 ~~l~v~nl~~~y~~~~----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p-~~G~I~~~G~~~~~~~~ 76 (252)
T COG1124 2 TLLSVRNLSIVYGGGK----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP-SSGSILLDGKPLAPKKR 76 (252)
T ss_pred ceEEEeceEEEecCCc----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCceEEECCcccCcccc
Confidence 3689999999985431 122699999999999999999999999999999999999887 59999999976543
Q ss_pred -hhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhh
Q psy13765 104 -NAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK 180 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~ 180 (606)
+.+++.+.+||||+ .+.|..||++++..- + .+++++-+|++ +.-+...+.-|+- .+|.-+..+||||+
T Consensus 77 ~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Ep-l------~~~~~~~~~~~-i~~~L~~VgL~~~-~l~R~P~eLSGGQ~ 147 (252)
T COG1124 77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEP-L------RPHGLSKSQQR-IAELLDQVGLPPS-FLDRRPHELSGGQR 147 (252)
T ss_pred chhhccceeEEecCCccccCcchhHHHHHhhh-h------ccCCccHHHHH-HHHHHHHcCCCHH-HHhcCchhcChhHH
Confidence 24678899999998 578999998877641 1 12556777766 3323333333322 34555555888888
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
||++|||||..+|++|++|||||+||+..+.+|+++|.+++++ |.|.|+++||.. .+..+|||+++|++|++++.++.
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEeech
Confidence 8888999999999999999999999999999999999999875 899999999976 68899999999999999999999
Q ss_pred hHHHH
Q psy13765 260 DQLVN 264 (606)
Q Consensus 260 ~~~~~ 264 (606)
+++.+
T Consensus 227 ~~l~~ 231 (252)
T COG1124 227 EELLS 231 (252)
T ss_pred hhhhc
Confidence 98865
No 21
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-44 Score=372.80 Aligned_cols=232 Identities=25% Similarity=0.444 Sum_probs=192.9
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-hhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-INA 105 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-~~~ 105 (606)
..++++||+++| +...+++|+|++|++||+++|+|||||||||||++|||+..| .+|+|.++|+++. ..-
T Consensus 4 ~~l~i~~v~k~y--------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p-~~G~I~l~G~~i~~lpp 74 (352)
T COG3842 4 PALEIRNVSKSF--------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP-SSGEILLDGEDITDVPP 74 (352)
T ss_pred ceEEEEeeeeec--------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCCh
Confidence 468999999997 467899999999999999999999999999999999999887 5999999999764 345
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~ 184 (606)
.+|.+|+|||+-.|||++||.+.+. +||.- .+..... .++||.-+.+++.-.+ ..+..+..|||||||||+
T Consensus 75 ~kR~ig~VFQ~YALFPHltV~~NVa-fGLk~-----~~~~~~~~i~~rv~e~L~lV~L~~--~~~R~p~qLSGGQqQRVA 146 (352)
T COG3842 75 EKRPIGMVFQSYALFPHMTVEENVA-FGLKV-----RKKLKKAEIKARVEEALELVGLEG--FADRKPHQLSGGQQQRVA 146 (352)
T ss_pred hhcccceeecCcccCCCCcHHHHhh-hhhhh-----cCCCCHHHHHHHHHHHHHHcCchh--hhhhChhhhChHHHHHHH
Confidence 5789999999999999999966543 35541 1112333 3567777777776554 566777778888888888
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
+||||+.+|++|+||||.|+||..-+.++..-++++.++ |.|.|++|||.. +...++|||.+|++|++...|+|+++.
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHHHh
Confidence 888888889999999999999999999999999999875 999999999976 567999999999999999999999984
Q ss_pred HHHHhCCCCCCCCCChHHHHH
Q psy13765 264 NYLSSVNLPCPKYHNPADFVI 284 (606)
Q Consensus 264 ~~f~~~g~~~~~~~~~ad~~~ 284 (606)
. .|...-.|||+-
T Consensus 226 ~--------~P~~~fVA~FiG 238 (352)
T COG3842 226 E--------RPATRFVADFIG 238 (352)
T ss_pred h--------CcchHHHHHHhC
Confidence 3 455555566654
No 22
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=3.9e-43 Score=367.17 Aligned_cols=218 Identities=26% Similarity=0.392 Sum_probs=182.8
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--h
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--N 104 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--~ 104 (606)
..++++||+++| +++.+|+|||++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... .
T Consensus 6 ~~i~i~~l~k~~--------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p-~~G~v~i~G~~~~~~~~ 76 (306)
T PRK13537 6 APIDFRNVEKRY--------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP-DAGSISLCGEPVPSRAR 76 (306)
T ss_pred ceEEEEeEEEEE--------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEecccchH
Confidence 368999999997 346799999999999999999999999999999999999877 59999999987532 3
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhH
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKR 182 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~kr 182 (606)
..++.+||++|++.+++.+|+.+.+...+.. .+.+..+ ++|+. +++..-++- ..+.+...+|+|||||
T Consensus 77 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qr 146 (306)
T PRK13537 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRY-------FGLSAAAARALVP---PLLEFAKLENKADAKVGELSGGMKRR 146 (306)
T ss_pred HHHhcEEEEeccCcCCCCCcHHHHHHHHHHH-------cCCCHHHHHHHHH---HHHHHcCCchHhcCchhhCCHHHHHH
Confidence 4678899999999999999998887754321 1122222 23332 233322332 4678889999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
+.||+||+++|++|+|||||+|||+.++..+.++|++++++|+|||++||+++ ++.++||++++|++|++++.|+++++
T Consensus 147 l~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l 225 (306)
T PRK13537 147 LTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHAL 225 (306)
T ss_pred HHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999888999999999987 57899999999999999999999988
Q ss_pred HH
Q psy13765 263 VN 264 (606)
Q Consensus 263 ~~ 264 (606)
..
T Consensus 226 ~~ 227 (306)
T PRK13537 226 IE 227 (306)
T ss_pred Hh
Confidence 64
No 23
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-43 Score=367.64 Aligned_cols=198 Identities=28% Similarity=0.494 Sum_probs=169.0
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NA 105 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~ 105 (606)
..|+++||++.|. +..+|+|+|++|++||+++|+||||||||||||+|||+..+ .+|+|.++|++.+. .-
T Consensus 2 ~~i~l~~v~K~yg--------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~-~~G~I~i~g~~vt~l~P 72 (338)
T COG3839 2 AELELKNVRKSFG--------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP-TSGEILIDGRDVTDLPP 72 (338)
T ss_pred cEEEEeeeEEEcC--------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCCh
Confidence 3689999999973 22299999999999999999999999999999999999887 59999999987653 34
Q ss_pred hcccEEEEccCCCCCCCCcHH----------------------HHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCC
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIE----------------------NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP 163 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~----------------------~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~ 163 (606)
.+|.+++|||+..++|.+||. ++.+.+++++..++++.+|||||||||++||||+.+
T Consensus 73 ~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~- 151 (338)
T COG3839 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRK- 151 (338)
T ss_pred hHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcC-
Confidence 468899999999999999983 445556666666666666666666666655555555
Q ss_pred cccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhc
Q psy13765 164 RVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMF 242 (606)
Q Consensus 164 ~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~ 242 (606)
|+++++|||.|+||+..+..+...|+++.++ |.|+|.+|||.. ++..++
T Consensus 152 -----------------------------P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtla 201 (338)
T COG3839 152 -----------------------------PKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLA 201 (338)
T ss_pred -----------------------------CCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhC
Confidence 9999999999999999999999999999876 899999999966 678999
Q ss_pred ceeeeecCCcEEEEcChhHHHH
Q psy13765 243 DQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 243 D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
||+.+|++|++...|+|.++.+
T Consensus 202 dri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 202 DRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred CEEEEEeCCeeeecCChHHHhh
Confidence 9999999999999999999864
No 24
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-43 Score=354.84 Aligned_cols=221 Identities=24% Similarity=0.419 Sum_probs=177.3
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc---cCCh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---SRNI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~---~~~~ 103 (606)
++|+++|+++.+ +...+++|||++|+.||++|++|||||||||||++|+|+..| ..|.|.+||+ +.+.
T Consensus 1 m~i~i~~~~~~~--------~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p-~~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 1 MSIRINNVKKRF--------GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP-DAGRIRLNGRVLFDVSN 71 (345)
T ss_pred Cceeehhhhhhc--------ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC-CCceEEECCEeccchhc
Confidence 467888988876 456799999999999999999999999999999999999887 5999999998 4432
Q ss_pred -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCC-hHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhh
Q psy13765 104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLS-GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lS-gGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~k 181 (606)
....|+||||+|+..+|+.+||.+.+. +||.-... ..| .-.|.|+.--..++.-. -+.|..+..|||||||
T Consensus 72 ~~~~~R~VGfvFQ~YALF~HmtVa~NIA-FGl~~~~~----~p~~~~~r~rv~elL~lvqL~--~la~ryP~QLSGGQrQ 144 (345)
T COG1118 72 LAVRDRKVGFVFQHYALFPHMTVADNIA-FGLKVRKE----RPSEAEIRARVEELLRLVQLE--GLADRYPAQLSGGQRQ 144 (345)
T ss_pred cchhhcceeEEEechhhcccchHHhhhh-hccccccc----CCChhhHHHHHHHHHHHhccc--chhhcCchhcChHHHH
Confidence 334578999999999999999854432 34433211 122 22344554222222211 1456677777777777
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
||++||||+.+|++|+||||+++||..-+.++.+.|+++.++ |.|++++|||+. +++++||||++|++|+|...|+++
T Consensus 145 RVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~ 223 (345)
T COG1118 145 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPD 223 (345)
T ss_pred HHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHH
Confidence 777888888889999999999999999999999999999886 999999999976 688999999999999999999999
Q ss_pred HHHH
Q psy13765 261 QLVN 264 (606)
Q Consensus 261 ~~~~ 264 (606)
|+.+
T Consensus 224 ev~~ 227 (345)
T COG1118 224 EVYD 227 (345)
T ss_pred HHhc
Confidence 9854
No 25
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-43 Score=351.30 Aligned_cols=216 Identities=27% Similarity=0.407 Sum_probs=175.7
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----- 103 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----- 103 (606)
|+++||+++|+ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|.+...
T Consensus 1 l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~ 71 (235)
T cd03261 1 IELRGLTKSFG--------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP-DSGEVLIDGEDISGLSEAE 71 (235)
T ss_pred CeEEEEEEEEC--------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccChhh
Confidence 46899999872 35699999999999999999999999999999999999876 59999999976431
Q ss_pred -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765 104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQK 180 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~ 180 (606)
..+++.++||+|++.+++.+|+.+.+... ... . ...+..+ ++++. +++..-.+- ..|.+...+|||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~-~~~--~---~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LSgG~~ 142 (235)
T cd03261 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFP-LRE--H---TRLSEEEIREIVL---EKLEAVGLRGAEDLYPAELSGGMK 142 (235)
T ss_pred HHHHhcceEEEccCcccCCCCcHHHHHHHH-Hhh--c---cCCCHHHHHHHHH---HHHHHcCCchhhcCChhhCCHHHH
Confidence 34567899999999999999997766432 110 0 0112222 23332 333332331 45888899999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
|||.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.++||++++|++|++++.|++
T Consensus 143 qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~ 221 (235)
T cd03261 143 KRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTP 221 (235)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCH
Confidence 9999999999999999999999999999999999999999874 899999999987 57789999999999999999998
Q ss_pred hHHH
Q psy13765 260 DQLV 263 (606)
Q Consensus 260 ~~~~ 263 (606)
+++.
T Consensus 222 ~~~~ 225 (235)
T cd03261 222 EELR 225 (235)
T ss_pred HHHc
Confidence 7753
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=9.3e-43 Score=368.44 Aligned_cols=220 Identities=26% Similarity=0.407 Sum_probs=178.4
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h-
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N- 104 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~- 104 (606)
|+++||+++|+.+ .+.+.+|+|||+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... .
T Consensus 2 I~~~~lsk~y~~~----~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p-~~G~I~i~G~~i~~~~~~~ 76 (343)
T TIGR02314 2 IKLSNITKVFHQG----TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TSGSVIVDGQDLTTLSNSE 76 (343)
T ss_pred EEEEEEEEEECCC----CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCcCCHHH
Confidence 7899999998421 1235799999999999999999999999999999999999877 59999999986532 2
Q ss_pred --hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhh
Q psy13765 105 --AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181 (606)
Q Consensus 105 --~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~k 181 (606)
..++.+||++|+..+++..|+.+.+.. ++. ..+.+..+ ++|+.-+.+.+.-.+ ..|.+...|||||||
T Consensus 77 l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~-~~~------~~~~~~~~~~~~v~e~l~~vgL~~--~~~~~~~~LSgGqkQ 147 (343)
T TIGR02314 77 LTKARRQIGMIFQHFNLLSSRTVFGNVAL-PLE------LDNTPKDEIKRKVTELLALVGLGD--KHDSYPSNLSGGQKQ 147 (343)
T ss_pred HHHHhcCEEEEECCccccccCcHHHHHHH-HHH------HcCCCHHHHHHHHHHHHHHcCCch--hhhCChhhCCHHHHH
Confidence 346789999999999999999665543 111 01122222 334433333332211 468888899999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
||.|||||+++|++|+|||||+|||+.++..++++|++++++ |.|||++||+++ .+.++||++++|++|++++.|+++
T Consensus 148 RV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~~ 226 (343)
T TIGR02314 148 RVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTVS 226 (343)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999875 999999999976 577899999999999999999998
Q ss_pred HHH
Q psy13765 261 QLV 263 (606)
Q Consensus 261 ~~~ 263 (606)
++.
T Consensus 227 ~v~ 229 (343)
T TIGR02314 227 EIF 229 (343)
T ss_pred HHH
Confidence 874
No 27
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-43 Score=334.68 Aligned_cols=214 Identities=22% Similarity=0.368 Sum_probs=175.9
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC--Chhhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR--NINAF 106 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~--~~~~~ 106 (606)
|++++++++|+ ...++++||||+++.||+++|+|||||||||+|++|++++.| .+|+|.+||.+. ++...
T Consensus 2 l~v~~l~K~y~-------~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P-~~G~v~idg~d~~~~p~~v 73 (245)
T COG4555 2 LEVTDLTKSYG-------SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP-DSGKVTIDGVDTVRDPSFV 73 (245)
T ss_pred eeeeehhhhcc-------CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC-CCceEEEeecccccChHHH
Confidence 78899999874 234599999999999999999999999999999999999987 599999999764 45678
Q ss_pred cccEEEEccCCCCCCCCcHHHHHH----------------------HcCCccccCCccccCChHHHHHHHHHHHHhcCCc
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMS----------------------LLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~----------------------~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~ 164 (606)
|+++|.++.+..++..+|++|.+. .++|.++.|++++++|.|+||||+
T Consensus 74 rr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~---------- 143 (245)
T COG4555 74 RRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVA---------- 143 (245)
T ss_pred hhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHH----------
Confidence 999999998889999999865554 445555555555556666555555
Q ss_pred ccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcce
Q psy13765 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQ 244 (606)
Q Consensus 165 ~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~ 244 (606)
|||||+++|++++|||||||||..+...+.+.+++++++|++||++||.++ ++.++||+
T Consensus 144 --------------------iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDr 202 (245)
T COG4555 144 --------------------IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDR 202 (245)
T ss_pred --------------------HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhhe
Confidence 555555559999999999999999999999999999999999999999976 68889999
Q ss_pred eeeecCCcEEEEcChhHHHHHHHhCCCCCCCCCChHHHHHHHhcC
Q psy13765 245 VYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASG 289 (606)
Q Consensus 245 v~~L~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~~~~~~ 289 (606)
+++|++|++++.|+++++.+-- ...|+.+.+......
T Consensus 203 vivlh~Gevv~~gs~~~l~~r~--------~~~~le~~f~~~l~~ 239 (245)
T COG4555 203 VIVLHKGEVVLEGSIEALDART--------VLRNLEEIFAFALKL 239 (245)
T ss_pred EEEEecCcEEEcCCHHHHHHHH--------hhcCHHHHHHHhhcC
Confidence 9999999999999998876531 134666666555443
No 28
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.9e-42 Score=364.95 Aligned_cols=219 Identities=25% Similarity=0.379 Sum_probs=183.4
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--h
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--I 103 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~ 103 (606)
...|+++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.. .
T Consensus 39 ~~~i~i~nl~k~y--------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p-~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 39 TVAIDLAGVSKSY--------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP-DAGKITVLGVPVPARA 109 (340)
T ss_pred ceeEEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CceEEEECCEECCcch
Confidence 4569999999997 345799999999999999999999999999999999999877 5999999998753 2
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKK 181 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k 181 (606)
...++.+||++|++.+++.+|+.+.+...+... +.+..+ ++++ .+++..-++- ..+.+...+|+||||
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~-------~~~~~~~~~~~---~~ll~~~~L~~~~~~~~~~LS~G~kq 179 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYF-------GMSTREIEAVI---PSLLEFARLESKADARVSDLSGGMKR 179 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc-------CCCHHHHHHHH---HHHHHHcCCchhhCCChhhCCHHHHH
Confidence 345778999999999999999988776543110 122222 2233 2333332332 467888899999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~ 261 (606)
|+.||+||+++|++|+|||||+|||+.++..+.++|++++++|+|||++||+++ ++.++||++++|++|++++.|++++
T Consensus 180 rv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~ 258 (340)
T PRK13536 180 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHA 258 (340)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999999999888999999999987 5789999999999999999999998
Q ss_pred HHH
Q psy13765 262 LVN 264 (606)
Q Consensus 262 ~~~ 264 (606)
+..
T Consensus 259 l~~ 261 (340)
T PRK13536 259 LID 261 (340)
T ss_pred HHh
Confidence 865
No 29
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-42 Score=347.67 Aligned_cols=219 Identities=29% Similarity=0.495 Sum_probs=181.9
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----h
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----I 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----~ 103 (606)
.++++|++|+|+. + +.+|+|+|+++++||.++|+||||||||||+++|+|+..| .+|+|.++|.+.. .
T Consensus 3 ~i~~~~l~~~y~~------~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p-~~G~v~~~g~~~~~~~~~ 74 (235)
T COG1122 3 MIEAENLSFRYPG------R-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP-TSGEVLVDGLDTSSEKSL 74 (235)
T ss_pred eEEEEEEEEEcCC------C-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC-CCCEEEECCeeccchhhH
Confidence 5789999999742 2 6899999999999999999999999999999999999887 5899999998744 5
Q ss_pred hhhcccEEEEccCCCCC-CCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCcccccCCCCCCCCchhhh
Q psy13765 104 NAFRRVSCYIQQDDRLQ-PLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~-~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~k 181 (606)
..+++.+|||+|++..+ ..-||.+=+. +|+... +++.. .++|+.-+.+++.-.+. +|.++..|||||||
T Consensus 75 ~~~~~~vG~VfQnpd~q~~~~tV~~eva-fg~~n~------g~~~~e~~~rv~~~l~~vgl~~~--~~r~p~~LSGGqkq 145 (235)
T COG1122 75 LELRQKVGLVFQNPDDQLFGPTVEDEVA-FGLENL------GLPREEIEERVAEALELVGLEEL--LDRPPFNLSGGQKQ 145 (235)
T ss_pred HHhhcceEEEEECcccccccCcHHHHHh-hchhhc------CCCHHHHHHHHHHHHHHcCchhh--ccCCccccCCccee
Confidence 67899999999998543 2345533222 233221 23332 46777777777665444 78888888888888
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
||+||.+|+.+|++|+|||||||||+..+.++++.+++++++ |+|||++|||.. .+..++||+++|++|+++++|+|+
T Consensus 146 RvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p~ 224 (235)
T COG1122 146 RVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDPA 224 (235)
T ss_pred eHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCHH
Confidence 888999999999999999999999999999999999999987 799999999987 578899999999999999999998
Q ss_pred HHHH
Q psy13765 261 QLVN 264 (606)
Q Consensus 261 ~~~~ 264 (606)
++.+
T Consensus 225 ~i~~ 228 (235)
T COG1122 225 EIFN 228 (235)
T ss_pred HHhh
Confidence 8765
No 30
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-43 Score=334.64 Aligned_cols=234 Identities=26% Similarity=0.393 Sum_probs=183.8
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccC
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSR 101 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~ 101 (606)
...++++||++.| +.+++|+|||+.|++++++|+||||||||||||+++..+... ..+|+|.++|+++
T Consensus 5 ~~~~~~~~l~~yY--------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni 76 (253)
T COG1117 5 IPAIEVRDLNLYY--------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI 76 (253)
T ss_pred cceeEecceeEEE--------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeec
Confidence 3568999999987 568899999999999999999999999999999999987432 2579999999853
Q ss_pred -----ChhhhcccEEEEccCCCCCCCCcH-HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCC
Q psy13765 102 -----NINAFRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSN 175 (606)
Q Consensus 102 -----~~~~~~~~~~yv~Q~~~l~~~ltv-~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~ 175 (606)
+..++|+.+|.|||.|..|| +++ +++...+.+....+....++=----|+.++--+.=. -||++..+|
T Consensus 77 ~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-----rL~~sa~~L 150 (253)
T COG1117 77 YDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-----RLHKSALGL 150 (253)
T ss_pred cCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-----HhhCCccCC
Confidence 45678999999999999999 565 666544444333321110000000122232222211 367777889
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
||||||||.|||||+.+|+||+||||||+|||.+..+|-+++.+|++ .-|||++||++.. ..+..|+..++..|++++
T Consensus 151 SGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmqQ-AaRvSD~taFf~~G~LvE 228 (253)
T COG1117 151 SGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQQ-AARVSDYTAFFYLGELVE 228 (253)
T ss_pred ChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHHH-HHHHhHhhhhhcccEEEE
Confidence 99999999999999999999999999999999999999999999984 6899999999875 679999999999999999
Q ss_pred EcChhHHHHHHHhCCCCCCCCCChHHHH
Q psy13765 256 QGATDQLVNYLSSVNLPCPKYHNPADFV 283 (606)
Q Consensus 256 ~G~~~~~~~~f~~~g~~~~~~~~~ad~~ 283 (606)
+|+++++.. .|......||+
T Consensus 229 ~g~T~~iF~--------~P~~~~TedYi 248 (253)
T COG1117 229 FGPTDKIFT--------NPKHKRTEDYI 248 (253)
T ss_pred EcCHHhhhc--------CccHHHHHHHh
Confidence 999998843 46655556654
No 31
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-42 Score=366.49 Aligned_cols=219 Identities=21% Similarity=0.372 Sum_probs=181.1
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAF 106 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~ 106 (606)
.|+++||+++|+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.+||++... ...
T Consensus 3 ~l~i~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p-~~G~I~~~g~~i~~~~~~ 74 (356)
T PRK11650 3 GLKLQAVRKSYD-------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI-TSGEIWIGGRVVNELEPA 74 (356)
T ss_pred EEEEEeEEEEeC-------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC-CceEEEECCEECCCCCHH
Confidence 489999999873 235799999999999999999999999999999999999876 59999999987532 233
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHH-HHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK-KRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I 185 (606)
++.+|||+|++.++|.+||.+.+.. ++.. .+++..++ +|+.-+.+++.-. -++|.+...|||||||||+|
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~-~~~~------~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~QRval 145 (356)
T PRK11650 75 DRDIAMVFQNYALYPHMSVRENMAY-GLKI------RGMPKAEIEERVAEAARILELE--PLLDRKPRELSGGQRQRVAM 145 (356)
T ss_pred HCCEEEEeCCccccCCCCHHHHHHh-HHhh------cCCCHHHHHHHHHHHHHHcCCh--hHhhCChhhCCHHHHHHHHH
Confidence 5789999999999999999776643 2211 12344332 4444333333222 15788888999999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++|||+. ++.+++|++++|++|+++..|+++++.+
T Consensus 146 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 146 GRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999875 999999999976 5789999999999999999999998753
No 32
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=5.4e-42 Score=358.40 Aligned_cols=218 Identities=26% Similarity=0.389 Sum_probs=180.1
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--IN 104 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~ 104 (606)
+.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ..
T Consensus 3 ~~i~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 3 VAIDLVGVSKSY--------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP-DRGKITVLGEPVPSRAR 73 (303)
T ss_pred cEEEEEeEEEEe--------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECcccHH
Confidence 468999999987 235699999999999999999999999999999999999876 5999999998653 23
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhH
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKR 182 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~kr 182 (606)
..++.+||++|++.+++.+|+.+.+...+... ..+..+ ++++. +++..-.+- ..|.+...+|||||||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-------~~~~~~~~~~~~---~ll~~~~l~~~~~~~~~~LSgG~~qr 143 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYF-------GMSTREIEAVIP---SLLEFARLESKADVRVALLSGGMKRR 143 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHc-------CCCHHHHHHHHH---HHHHHCCChhHhcCchhhCCHHHHHH
Confidence 45678999999999999999977765432110 122211 22332 233322221 4678889999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.++||++++|++|++++.|+++++
T Consensus 144 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 222 (303)
T TIGR01288 144 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHAL 222 (303)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999999888999999999987 57789999999999999999999887
Q ss_pred HH
Q psy13765 263 VN 264 (606)
Q Consensus 263 ~~ 264 (606)
..
T Consensus 223 ~~ 224 (303)
T TIGR01288 223 ID 224 (303)
T ss_pred Hh
Confidence 54
No 33
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4.3e-42 Score=365.39 Aligned_cols=218 Identities=21% Similarity=0.379 Sum_probs=181.8
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAF 106 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~ 106 (606)
.|+++||+++| +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++... ...
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p-~~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 4 YLSIDNIRKRF--------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ-TAGTIYQGGRDITRLPPQ 74 (353)
T ss_pred EEEEEEEEEEe--------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-CceEEEECCEECCCCCHH
Confidence 58999999987 345699999999999999999999999999999999999876 59999999987532 234
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I 185 (606)
++.+|||+|+..++|.+||.+.+.. ++.. ..++..+ ++|+.-+.+++.-.+ ++|.....|||||||||+|
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~-~~~~------~~~~~~~~~~~~~~~l~~l~L~~--~~~~~~~~LSgGq~QRvaL 145 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAY-GLKN------RGMGRAEVAERVAELLDLVGLPG--SERKYPGQLSGGQQQRVAL 145 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHH-HHHh------cCCCHHHHHHHHHHHHHHcCCCc--hhhCChhhCCHHHHHHHHH
Confidence 6789999999999999999776643 2211 1234444 345544444443222 5688888899999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
||||+.+|++++|||||+|||+.++.++.+.|+++.++ |.|+|++|||+. ++.+++|++++|++|+++..|+++++.+
T Consensus 146 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 146 ARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999875 999999999986 5789999999999999999999998864
No 34
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-42 Score=340.70 Aligned_cols=227 Identities=20% Similarity=0.340 Sum_probs=192.3
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--- 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--- 103 (606)
..++++||++++ +.-.+++|||+++++||+++||||||||||||+|+|+|+++| .+|+|.++|+++..
T Consensus 3 ~lL~v~~l~k~F--------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P-~~G~v~~~G~~it~l~p 73 (250)
T COG0411 3 PLLEVRGLSKRF--------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP-SSGTVIFRGRDITGLPP 73 (250)
T ss_pred ceeeeccceeec--------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC-CCceEEECCcccCCCCH
Confidence 457899999986 678899999999999999999999999999999999999987 59999999987542
Q ss_pred -hhhcccEEEEccCCCCCCCCcHHHHHH-HcCCccccCCccccCC---hHHHHHHHHHHHHhcCCccc-ccCCCCCCCCc
Q psy13765 104 -NAFRRVSCYIQQDDRLQPLLTIENVMS-LLGLDESQNTRSSQLS---GGQKKRLSIALELINNPRVM-FLDEPTTSNPN 177 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~-~~gl~~~~~~~~~~lS---gGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~ 177 (606)
+..+..++..||...+|+.+||.|.+. ....... -...-... ..|++-.+-|.+++..-.+. ..|+|.++||+
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~-~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~Lsy 152 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLG-LSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSY 152 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhhh-hhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCCh
Confidence 334567899999999999999954433 2211100 00001111 24667778888998887776 88999999999
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~ 256 (606)
||||||+|||||+++|++|+||||.+||.+..+.++.+.|++++++ |.||+++.||+. .++.+||||++|+.|+++.+
T Consensus 153 G~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~~IAe 231 (250)
T COG0411 153 GQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGEVIAE 231 (250)
T ss_pred hHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCcCccc
Confidence 9999999999999999999999999999999999999999999985 799999999987 58899999999999999999
Q ss_pred cChhHHHH
Q psy13765 257 GATDQLVN 264 (606)
Q Consensus 257 G~~~~~~~ 264 (606)
|+|+++.+
T Consensus 232 G~P~eV~~ 239 (250)
T COG0411 232 GTPEEVRN 239 (250)
T ss_pred CCHHHHhc
Confidence 99999864
No 35
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.8e-42 Score=325.93 Aligned_cols=192 Identities=32% Similarity=0.541 Sum_probs=169.4
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----- 102 (606)
.|+|+||++.|+. .+++|+||||+|++||++-|+||||||||||||+|.+...| .+|+|.+||++..
T Consensus 1 mI~f~~V~k~Y~~-------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p-t~G~i~~~~~dl~~l~~~ 72 (223)
T COG2884 1 MIRFENVSKAYPG-------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP-TRGKILVNGHDLSRLKGR 72 (223)
T ss_pred CeeehhhhhhcCC-------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC-CCceEEECCeeccccccc
Confidence 3789999999852 37799999999999999999999999999999999999877 5999999998653
Q ss_pred -hhhhcccEEEEccCCCCCCCCcH----------------------HHHHHHcCCccccCCccccCChHHHHHHHHHHHH
Q psy13765 103 -INAFRRVSCYIQQDDRLQPLLTI----------------------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL 159 (606)
Q Consensus 103 -~~~~~~~~~yv~Q~~~l~~~ltv----------------------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L 159 (606)
..-+|++||.|+||..+.+..|| .++|+..||.+..+..+.+|||||+|||+||||+
T Consensus 73 ~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAi 152 (223)
T COG2884 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAI 152 (223)
T ss_pred ccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHH
Confidence 23568999999999999999986 4567778888888888888888888888877777
Q ss_pred hcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q psy13765 160 INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLF 239 (606)
Q Consensus 160 ~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~ 239 (606)
+++ |++|+.||||.+|||..+.++++++.++.+.|.||++.|||.. .+-
T Consensus 153 V~~------------------------------P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~ 201 (223)
T COG2884 153 VNQ------------------------------PAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVN 201 (223)
T ss_pred ccC------------------------------CCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHH
Confidence 777 9999999999999999999999999999999999999999954 566
Q ss_pred hhcceeeeecCCcEEEEcC
Q psy13765 240 QMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 240 ~~~D~v~~L~~G~~~~~G~ 258 (606)
.+-.|++.|++|+++....
T Consensus 202 ~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 202 RMRHRVLALEDGRLVRDES 220 (223)
T ss_pred hccCcEEEEeCCEEEeccc
Confidence 7788999999999987654
No 36
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-42 Score=341.04 Aligned_cols=215 Identities=24% Similarity=0.396 Sum_probs=173.9
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INAF 106 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~~ 106 (606)
|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ....
T Consensus 1 i~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~ 71 (220)
T cd03265 1 IEVENLVKKY--------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP-TSGRATVAGHDVVREPREV 71 (220)
T ss_pred CEEEEEEEEE--------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEecCcChHHH
Confidence 4789999987 235799999999999999999999999999999999999876 5999999997643 2345
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I 185 (606)
++.++|++|++.+++.+|+.+.+.... . . .+.+.. .++++.-+.+.+.-. -..|.+...+|+|||||+.|
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~-~-~-----~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qr~~l 142 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHA-R-L-----YGVPGAERRERIDELLDFVGLL--EAADRLVKTYSGGMRRRLEI 142 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHH-H-H-----cCCCHHHHHHHHHHHHHHcCCH--HHhhCChhhCCHHHHHHHHH
Confidence 678999999999999999876654311 0 0 011111 233333222332211 14678889999999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
|+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.+.||++++|++|+++..|+++++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999999999999876 899999999987 57789999999999999999987763
No 37
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=8.4e-42 Score=363.87 Aligned_cols=218 Identities=22% Similarity=0.395 Sum_probs=179.6
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc--cEEEECCccCCh-h
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT--GQILTNGHSRNI-N 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~--G~I~~~G~~~~~-~ 104 (606)
.|+++||+++|. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+ |+|.++|++... .
T Consensus 5 ~l~~~~l~~~~~--------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-~~~~G~i~~~g~~~~~~~ 75 (362)
T TIGR03258 5 GIRIDHLRVAYG--------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA-AGLTGRIAIADRDLTHAP 75 (362)
T ss_pred EEEEEEEEEEEC--------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCCEEEEECCEECCCCC
Confidence 588999999973 35699999999999999999999999999999999999876 58 999999987532 2
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl 183 (606)
..++.+|||+|+..++|.+||.+.+.. ++.. ...+..+ ++|+.-+.+++.-.+ .+|.....|||||||||
T Consensus 76 ~~~r~ig~vfQ~~~l~p~~tv~enl~~-~l~~------~~~~~~~~~~~v~~~l~~~gL~~--~~~~~~~~LSgGq~QRv 146 (362)
T TIGR03258 76 PHKRGLALLFQNYALFPHLKVEDNVAF-GLRA------QKMPKADIAERVADALKLVGLGD--AAAHLPAQLSGGMQQRI 146 (362)
T ss_pred HHHCCEEEEECCcccCCCCcHHHHHHH-HHHH------cCCCHHHHHHHHHHHHHhcCCCc--hhhCChhhCCHHHHHHH
Confidence 345789999999999999999776643 2211 1123222 344443333332211 46888888999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ--GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~--g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~ 261 (606)
+|||||+.+|++|+|||||+|||+.++.++.+.|++++++ |.|+|++|||++ ++.+++|++++|++|+++..|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999876 899999999976 5789999999999999999999998
Q ss_pred HHH
Q psy13765 262 LVN 264 (606)
Q Consensus 262 ~~~ 264 (606)
+.+
T Consensus 226 ~~~ 228 (362)
T TIGR03258 226 LYD 228 (362)
T ss_pred HHh
Confidence 854
No 38
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=362.10 Aligned_cols=218 Identities=25% Similarity=0.433 Sum_probs=181.7
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAF 106 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~ 106 (606)
.|+++||+++| +++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.+||++... ...
T Consensus 6 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-~~G~I~~~g~~i~~~~~~ 76 (351)
T PRK11432 6 FVVLKNITKRF--------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP-TEGQIFIDGEDVTHRSIQ 76 (351)
T ss_pred EEEEEeEEEEE--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC-CceEEEECCEECCCCCHH
Confidence 68999999987 335699999999999999999999999999999999999877 59999999987532 233
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I 185 (606)
++.+|||+|+..++|.+||.+.+.. ++.. ...+.-+ ++|+.-+.+++.-.+ ++|.++..|||||||||+|
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~-~l~~------~~~~~~~~~~~v~~~l~~~gl~~--~~~r~~~~LSgGq~QRVaL 147 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGY-GLKM------LGVPKEERKQRVKEALELVDLAG--FEDRYVDQISGGQQQRVAL 147 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHH-HHhH------cCCCHHHHHHHHHHHHHHcCCch--hhcCChhhCCHHHHHHHHH
Confidence 5789999999999999999766543 2210 1123333 345554444443222 5688889999999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |+|+|++|||++ ++.+++|++++|++|+++..|+++++..
T Consensus 148 ARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 148 ARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999875 899999999987 5779999999999999999999998753
No 39
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-42 Score=338.98 Aligned_cols=209 Identities=25% Similarity=0.407 Sum_probs=169.0
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR 107 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~ 107 (606)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... ...+
T Consensus 1 l~~~~l~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03259 1 LELKGLSKTYG--------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP-DSGEILIDGRDVTGVPPER 71 (213)
T ss_pred CeeeeeEEEeC--------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcCcCchhh
Confidence 46899999873 35799999999999999999999999999999999999876 59999999986532 2345
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~I 185 (606)
+.++|++|++.+++.+|+.+.+... ... .+.+.. .++++ .+++..-.+- ..|.+...+|||||||+.|
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~-~~~------~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LSgG~~qrl~l 141 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFG-LKL------RGVPKAEIRARV---RELLELVGLEGLLNRYPHELSGGQQQRVAL 141 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhH-HHH------cCCCHHHHHHHH---HHHHHHcCChhhhhcChhhCCHHHHHHHHH
Confidence 6799999999999989987765431 100 011211 22333 2333333332 4678889999999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++|++|++++.|
T Consensus 142 a~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 142 ARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999874 899999999976 577899999999999998765
No 40
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.6e-41 Score=361.09 Aligned_cols=223 Identities=24% Similarity=0.416 Sum_probs=181.9
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NA 105 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~ 105 (606)
+.|+++||++.|. ++.+|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++... ..
T Consensus 1 ~~L~i~~l~~~~~--------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-~~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 1 MSIEIANIKKSFG--------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ-TSGHIRFHGTDVSRLHA 71 (353)
T ss_pred CEEEEEEEEEEeC--------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCH
Confidence 3588999999872 35799999999999999999999999999999999999876 59999999987532 23
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~ 184 (606)
.++.++||+|++.++|.+|+.+.+.. ++.... .....+..+ ++|+.-+.+.+.-+ -.+|.+...|||||||||+
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~-~~~~~~--~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGq~QRva 146 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAF-GLTVLP--RRERPNAAAIKAKVTQLLEMVQLA--HLADRYPAQLSGGQKQRVA 146 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHh-hhhhcc--cccCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHH
Confidence 45789999999999999999776643 222100 001123333 33443333333222 2578899999999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.++||++++|++|++++.|+++++.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999876 899999999986 578999999999999999999999875
Q ss_pred H
Q psy13765 264 N 264 (606)
Q Consensus 264 ~ 264 (606)
+
T Consensus 226 ~ 226 (353)
T PRK10851 226 R 226 (353)
T ss_pred h
Confidence 3
No 41
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.2e-41 Score=341.87 Aligned_cols=215 Identities=22% Similarity=0.445 Sum_probs=175.0
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NA 105 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~ 105 (606)
++++||+++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... ..
T Consensus 1 l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03218 1 LRAENLSKRYG--------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP-DSGKILLDGQDITKLPMHK 71 (232)
T ss_pred CeEEEEEEEeC--------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccCCHhH
Confidence 46899999873 35699999999999999999999999999999999999876 59999999986432 22
Q ss_pred -hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhH
Q psy13765 106 -FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKR 182 (606)
Q Consensus 106 -~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~kr 182 (606)
.++.++|++|++.+++.+|+.+.+... ... ...+.. .++++. +++..-.+ -..|.+...+|+|||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~-~~~------~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qr 141 (232)
T cd03218 72 RARLGIGYLPQEASIFRKLTVEENILAV-LEI------RGLSKKEREEKLE---ELLEEFHITHLRKSKASSLSGGERRR 141 (232)
T ss_pred HHhccEEEecCCccccccCcHHHHHHHH-HHh------cCCCHHHHHHHHH---HHHHHcCChhhhhCChhhCCHHHHHH
Confidence 245699999999999999997766532 110 011111 223332 23322222 25688889999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.++||++++|++|+++..|+++++
T Consensus 142 l~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 142 VEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 99999999999999999999999999999999999999888999999999987 57799999999999999999998775
Q ss_pred H
Q psy13765 263 V 263 (606)
Q Consensus 263 ~ 263 (606)
.
T Consensus 221 ~ 221 (232)
T cd03218 221 A 221 (232)
T ss_pred h
Confidence 3
No 42
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-41 Score=350.99 Aligned_cols=241 Identities=25% Similarity=0.366 Sum_probs=187.5
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC------
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN------ 102 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~------ 102 (606)
|+++|++++|+.+. ...+.+|+|||++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..
T Consensus 2 i~~~~v~~~y~~~~---~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 2 IKFEKVNYTYQPNS---PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP-TEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred EEEEEEEEEeCCCC---cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC-CCcEEEECCEECccccccc
Confidence 78999999985210 1124699999999999999999999999999999999999876 5999999998753
Q ss_pred -hhhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHHH-HHHHHHHHHhcCCcccccCCCCCCCCch
Q psy13765 103 -INAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK-KRLSIALELINNPRVMFLDEPTTSNPND 178 (606)
Q Consensus 103 -~~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~~~~de~~~~~s~g 178 (606)
...+++.+|||+|++ .+++ .|+.+.+. ++... .+++..+. +|+.-+.+.+.-.+ -+.|.+...||||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~-~~~~~------~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSgG 148 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFE-ETVLKDVA-FGPQN------FGIPKEKAEKIAAEKLEMVGLAD-EFWEKSPFELSGG 148 (288)
T ss_pred cHHHHHhhEEEEecCcchhccc-chHHHHHH-hHHHH------cCCCHHHHHHHHHHHHHHcCCCh-hhccCCcccCCHH
Confidence 234677899999987 4555 58766554 22211 01333332 23332222222110 2568899999999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.++|||+++|++|++++.|+
T Consensus 149 qkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~g~ 227 (288)
T PRK13643 149 QMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGT 227 (288)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999999888999999999986 5678999999999999999999
Q ss_pred hhHHHH---HHHhCCCCCCCCCChHHHH
Q psy13765 259 TDQLVN---YLSSVNLPCPKYHNPADFV 283 (606)
Q Consensus 259 ~~~~~~---~f~~~g~~~~~~~~~ad~~ 283 (606)
++++.. .++..|+.+|.....++.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 228 PSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred HHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 998753 4566777776654444433
No 43
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.9e-41 Score=362.52 Aligned_cols=219 Identities=22% Similarity=0.416 Sum_probs=182.2
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NA 105 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~ 105 (606)
..|+++|+++.| +++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++... ..
T Consensus 13 ~~L~l~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p-~~G~I~~~g~~i~~~~~ 83 (375)
T PRK09452 13 PLVELRGISKSF--------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP-DSGRIMLDGQDITHVPA 83 (375)
T ss_pred ceEEEEEEEEEE--------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECCCCCH
Confidence 358999999987 335799999999999999999999999999999999999877 59999999987532 23
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~ 184 (606)
.++.+|||+|++.++|.+||.+.+.. ++.. .+.+..+ ++|+.-+.+++.-.+ ++|.....|||||||||+
T Consensus 84 ~~r~ig~vfQ~~~lfp~ltv~eNi~~-~l~~------~~~~~~~~~~~~~~~l~~~~l~~--~~~~~p~~LSgGq~QRVa 154 (375)
T PRK09452 84 ENRHVNTVFQSYALFPHMTVFENVAF-GLRM------QKTPAAEITPRVMEALRMVQLEE--FAQRKPHQLSGGQQQRVA 154 (375)
T ss_pred HHCCEEEEecCcccCCCCCHHHHHHH-HHhh------cCCCHHHHHHHHHHHHHHcCCch--hhhCChhhCCHHHHHHHH
Confidence 45789999999999999999776643 2211 1233333 345544444443221 568888899999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
|||||+.+|++|+|||||+|||..++..+.+.|++++++ |.|+|++|||+. ++..++|++++|++|+++..|+++++.
T Consensus 155 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 155 IARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999875 999999999976 578999999999999999999999875
Q ss_pred H
Q psy13765 264 N 264 (606)
Q Consensus 264 ~ 264 (606)
.
T Consensus 234 ~ 234 (375)
T PRK09452 234 E 234 (375)
T ss_pred h
Confidence 3
No 44
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=5.5e-42 Score=320.34 Aligned_cols=216 Identities=25% Similarity=0.479 Sum_probs=177.2
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR 107 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~ 107 (606)
+.+++|.+.|.. .==..++.|+.||++||+||||||||||||+|+|+..| .+|+|.+||++... .-.+
T Consensus 2 l~L~~V~~~y~~----------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P-~~G~i~i~g~d~t~~~P~~ 70 (231)
T COG3840 2 LALDDVRFSYGH----------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP-ASGEILINGVDHTASPPAE 70 (231)
T ss_pred ccccceEEeeCc----------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC-CCceEEEcCeecCcCCccc
Confidence 456788887632 23456889999999999999999999999999999887 59999999987542 3346
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL 187 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~ 187 (606)
|-++.+||+.++|..+||++.+. +|+... -.|..-||+|+.-|.+=+.-.+ +++..+..|||||||||++||
T Consensus 71 RPVSmlFQEnNLFaHLtV~qNig-LGl~P~-----LkL~a~~r~~v~~aa~~vGl~~--~~~RLP~~LSGGqRQRvALAR 142 (231)
T COG3840 71 RPVSMLFQENNLFAHLTVAQNIG-LGLSPG-----LKLNAEQREKVEAAAAQVGLAG--FLKRLPGELSGGQRQRVALAR 142 (231)
T ss_pred CChhhhhhccccchhhhhhhhhc-ccCCcc-----cccCHHHHHHHHHHHHHhChhh--HhhhCccccCchHHHHHHHHH
Confidence 77999999999999999976542 344332 2377778888765443332211 567777888888888888889
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
+|+++-+||+||||+|.|||.-+.++..++.+++++ +.|++++||+|+ ++.+++|+++++++||+.+.|+.++...
T Consensus 143 clvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 143 CLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred HHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 999999999999999999999999999999999875 899999999998 4779999999999999999999987653
No 45
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-41 Score=342.01 Aligned_cols=219 Identities=21% Similarity=0.365 Sum_probs=175.5
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAF 106 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~ 106 (606)
.++++||++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... ...
T Consensus 2 ~l~~~~l~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~ 72 (239)
T cd03296 2 SIEVRNVSKRFG--------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP-DSGTILFGGEDATDVPVQ 72 (239)
T ss_pred EEEEEeEEEEEC--------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCCcc
Confidence 589999999873 35699999999999999999999999999999999999876 59999999986532 223
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHc-CCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLL-GLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl 183 (606)
++.++|++|++.+++.+|+.+.+... ...... ......+ ++++ .+++..-.+- ..+.+...+|+|||||+
T Consensus 73 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~G~~qrl 145 (239)
T cd03296 73 ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRS----ERPPEAEIRAKV---HELLKLVQLDWLADRYPAQLSGGQRQRV 145 (239)
T ss_pred ccceEEEecCCcccCCCCHHHHHhhhhhhcccc----ccCCHHHHHHHH---HHHHHHcCChhhhhcChhhCCHHHHHHH
Confidence 46799999999999989997766431 111000 0001111 2222 2233222221 45788899999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.+.||++++|++|++++.|+++++
T Consensus 146 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 146 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999999999999999999999999875 899999999986 46789999999999999999998876
Q ss_pred H
Q psy13765 263 V 263 (606)
Q Consensus 263 ~ 263 (606)
.
T Consensus 225 ~ 225 (239)
T cd03296 225 Y 225 (239)
T ss_pred h
Confidence 3
No 46
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.3e-41 Score=338.12 Aligned_cols=207 Identities=22% Similarity=0.345 Sum_probs=166.5
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----- 103 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----- 103 (606)
|+++|++++|+. +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++...
T Consensus 2 l~~~~l~~~~~~------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 2 IRFEQVSKAYPG------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP-TRGKIRFNGQDLTRLRGRE 74 (216)
T ss_pred eEEEEEEEEecC------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEehhhcChhH
Confidence 789999999732 124699999999999999999999999999999999999876 59999999986421
Q ss_pred -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765 104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNPRVM-FLDEPTTSNPNDQK 180 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~ 180 (606)
..+++.++|++|++.+++.+|+.+.+... ... ..... ..++++. +++..-.+- ..|.+...+|||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~-~~~------~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LSgG~~ 144 (216)
T TIGR00960 75 IPFLRRHIGMVFQDHRLLSDRTVYDNVAFP-LRI------IGVPPRDANERVS---AALEKVGLEGKAHALPMQLSGGEQ 144 (216)
T ss_pred HHHHHHhceEEecCccccccccHHHHHHHH-HHh------cCCCHHHHHHHHH---HHHHHcCChhhhhCChhhCCHHHH
Confidence 13567899999999999999987765431 100 01111 1233433 222222221 45788889999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ .+.++||++++|++|++
T Consensus 145 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 145 QRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999999877999999999986 56789999999999974
No 47
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-41 Score=359.42 Aligned_cols=219 Identities=26% Similarity=0.414 Sum_probs=177.1
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----- 103 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----- 103 (606)
|+++||+++|+.+ .+.+++|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|.+...
T Consensus 2 i~i~~l~~~y~~~----~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p-~~G~I~~~g~~i~~~~~~~ 76 (343)
T PRK11153 2 IELKNISKVFPQG----GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP-TSGRVLVDGQDLTALSEKE 76 (343)
T ss_pred EEEEeEEEEeCCC----CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECCcCCHHH
Confidence 7899999998421 1235799999999999999999999999999999999999876 59999999986532
Q ss_pred -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765 104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQK 180 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~ 180 (606)
..+++.+|||+|++.+++.+|+.+.+... +.. .+.+.-+ ++++. +++..-.+- ..|.++..||||||
T Consensus 77 ~~~~~~~ig~v~q~~~l~~~~tv~eni~~~-~~~------~~~~~~~~~~~~~---~~l~~~gL~~~~~~~~~~LSgGq~ 146 (343)
T PRK11153 77 LRKARRQIGMIFQHFNLLSSRTVFDNVALP-LEL------AGTPKAEIKARVT---ELLELVGLSDKADRYPAQLSGGQK 146 (343)
T ss_pred HHHHhcCEEEEeCCCccCCCCcHHHHHHHH-HHH------cCCCHHHHHHHHH---HHHHHcCCchhhhCChhhCCHHHH
Confidence 13467899999999999999997665432 100 0122222 23333 223222221 46788889999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||++++|++|++++.|++
T Consensus 147 qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~ 225 (343)
T PRK11153 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTV 225 (343)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999875 899999999986 57789999999999999999999
Q ss_pred hHHH
Q psy13765 260 DQLV 263 (606)
Q Consensus 260 ~~~~ 263 (606)
+++.
T Consensus 226 ~~~~ 229 (343)
T PRK11153 226 SEVF 229 (343)
T ss_pred HHHH
Confidence 8874
No 48
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.4e-41 Score=364.04 Aligned_cols=222 Identities=24% Similarity=0.407 Sum_probs=185.3
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~ 104 (606)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++.. ..
T Consensus 3 ~L~~~nls~~y--------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p-~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 3 MIDVSDLSVEF--------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP-TAGTVLVAGDDVEALSAR 73 (402)
T ss_pred eEEEeeEEEEE--------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-CCcEEEECCEEcCcCCHH
Confidence 58999999987 346799999999999999999999999999999999999877 5999999998653 35
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~ 184 (606)
++++.+|||+|++.+++.+|+.+.+.. +...... ....++.-.++++.-+.+.+.-. -+.|.+...||+|||||+.
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~-~~~~~~~-~~~~~~~~~~~~v~~~le~vgl~--~~~~~~~~~LSgGerQRv~ 149 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEM-GRTPHRS-RFDTWTETDRAAVERAMERTGVA--QFADRPVTSLSGGERQRVL 149 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHh-ccchhcc-cccCCCHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHH
Confidence 667889999999999999999887654 2221111 11223333455555455544322 2568899999999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
|||||+++|++|+|||||+|||+.++.+++++|++++++|+|||+++|+++ .+.++|||+++|++|++++.|+++++.
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999878999999999987 577999999999999999999998753
No 49
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-41 Score=341.72 Aligned_cols=222 Identities=27% Similarity=0.431 Sum_probs=176.8
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC------
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN------ 102 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~------ 102 (606)
++++||+++|+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~ 72 (241)
T cd03256 1 IEVENLSKTYP-------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP-TSGSVLIDGTDINKLKGKA 72 (241)
T ss_pred CEEeeEEEecC-------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CCceEEECCEeccccCHhH
Confidence 46899999863 115699999999999999999999999999999999999876 5999999998653
Q ss_pred hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCC--cccc-CChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCch
Q psy13765 103 INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNT--RSSQ-LSGGQKKRLSIALELINNPRVM-FLDEPTTSNPND 178 (606)
Q Consensus 103 ~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~--~~~~-lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g 178 (606)
....++.++|++|++.+++.+|+.+.+.. +....... ...+ .+.-.++++ .+++..-++- ..|.+...||+|
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~G 148 (241)
T cd03256 73 LRQLRRQIGMIFQQFNLIERLSVLENVLS-GRLGRRSTWRSLFGLFPKEEKQRA---LAALERVGLLDKAYQRADQLSGG 148 (241)
T ss_pred HHHHHhccEEEcccCcccccCcHHHHHHh-hhcccchhhhhhcccCcHHHHHHH---HHHHHHcCChhhhCCCcccCCHH
Confidence 22456789999999999999999776643 21110000 0001 111223333 2333333332 568889999999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.++||++++|++|++++.|
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999999999864 899999999987 477899999999999999999
Q ss_pred ChhHHH
Q psy13765 258 ATDQLV 263 (606)
Q Consensus 258 ~~~~~~ 263 (606)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 988753
No 50
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.8e-41 Score=335.30 Aligned_cols=206 Identities=27% Similarity=0.414 Sum_probs=167.5
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR 107 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~ 107 (606)
|+++|++++|+ ++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... ...+
T Consensus 1 l~~~~l~~~~~--------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~ 71 (208)
T cd03268 1 LKTNDLTKTYG--------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP-DSGEITFDGKSYQKNIEAL 71 (208)
T ss_pred CEEEEEEEEEC--------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCCcccchHHHH
Confidence 46899999872 35799999999999999999999999999999999999876 59999999986532 3456
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIA 186 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA 186 (606)
+.++|++|++.+++..|+.+.+....... + . .++++.-+.+.+ ++- ..+.+...+|+|||||++||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~-----~---~~~~~~~~l~~~---~l~~~~~~~~~~LS~G~~qrv~la 138 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLL--G-----I---RKKRIDEVLDVV---GLKDSAKKKVKGFSLGMKQRLGIA 138 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhc--C-----C---cHHHHHHHHHHc---CCHHHHhhhHhhCCHHHHHHHHHH
Confidence 77999999999999999977654321100 0 0 123332222222 221 45777888999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
+||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. .+.+++|++++|++|++++.|
T Consensus 139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999888999999999987 466899999999999998765
No 51
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-41 Score=340.04 Aligned_cols=220 Identities=25% Similarity=0.394 Sum_probs=175.2
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----- 103 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----- 103 (606)
|+++|++++++.. .+.+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...
T Consensus 2 i~~~~l~~~~~~~----~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~ 76 (233)
T cd03258 2 IELKNVSKVFGDT----GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP-TSGSVLVDGTDLTLLSGKE 76 (233)
T ss_pred eEEecceEEccCC----CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcccCCHHH
Confidence 7899999987321 0113799999999999999999999999999999999999876 59999999986532
Q ss_pred -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765 104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKK 181 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k 181 (606)
...++.++|++|++.+++.+|+.+.+... ... ...+..+ ....+.+++..-++- ..|.+...+|+||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~-~~~------~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 147 (233)
T cd03258 77 LRKARRRIGMIFQHFNLLSSRTVFENVALP-LEI------AGVPKAE--IEERVLELLELVGLEDKADAYPAQLSGGQKQ 147 (233)
T ss_pred HHHHHhheEEEccCcccCCCCcHHHHHHHH-HHH------cCCCHHH--HHHHHHHHHHHCCChhhhhcChhhCCHHHHH
Confidence 12467899999999999999987665431 100 0112111 111223333333332 467888899999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
|+.||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.++||++++|++|++++.|+++
T Consensus 148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 226 (233)
T cd03258 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVE 226 (233)
T ss_pred HHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999875 899999999976 577899999999999999999987
Q ss_pred HHH
Q psy13765 261 QLV 263 (606)
Q Consensus 261 ~~~ 263 (606)
++.
T Consensus 227 ~~~ 229 (233)
T cd03258 227 EVF 229 (233)
T ss_pred HHh
Confidence 763
No 52
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.6e-41 Score=351.82 Aligned_cols=216 Identities=23% Similarity=0.396 Sum_probs=179.2
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INA 105 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~ 105 (606)
.++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ...
T Consensus 2 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~-~~G~i~i~g~~~~~~~~~ 72 (301)
T TIGR03522 2 SIRVSSLTKLY--------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP-DSGSVQVCGEDVLQNPKE 72 (301)
T ss_pred EEEEEEEEEEE--------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccChHH
Confidence 58899999997 346799999999999999999999999999999999999876 5999999998653 234
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl 183 (606)
.++.+||++|++.+++.+|+.+.+..... ..+++..+ ++++.-+.+.+ ++- ..|.+...+|+|||||+
T Consensus 73 ~~~~ig~~~q~~~l~~~~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~---gl~~~~~~~~~~LS~G~~qrv 142 (301)
T TIGR03522 73 VQRNIGYLPEHNPLYLDMYVREYLQFIAG-------IYGMKGQLLKQRVEEMIELV---GLRPEQHKKIGQLSKGYRQRV 142 (301)
T ss_pred HHhceEEecCCCCCCCCCcHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHC---CCchHhcCchhhCCHHHHHHH
Confidence 56789999999999999999887764320 11123332 23333222222 221 35788889999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++|||+++|++|++++.|+++++.
T Consensus 143 ~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (301)
T TIGR03522 143 GLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELS 220 (301)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999965 799999999987 578999999999999999999999876
Q ss_pred H
Q psy13765 264 N 264 (606)
Q Consensus 264 ~ 264 (606)
.
T Consensus 221 ~ 221 (301)
T TIGR03522 221 A 221 (301)
T ss_pred H
Confidence 5
No 53
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-41 Score=360.86 Aligned_cols=218 Identities=23% Similarity=0.384 Sum_probs=179.2
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAF 106 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~ 106 (606)
.|+++||+++| +++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++... ...
T Consensus 3 ~l~i~~l~~~~--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p-~~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 3 SVTLRNVTKAY--------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI-TSGDLFIGEKRMNDVPPA 73 (369)
T ss_pred EEEEEEEEEEe--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECCCCCHh
Confidence 48999999987 235699999999999999999999999999999999999876 59999999987532 223
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I 185 (606)
++.++||+|++.+++.+|+.+.+.. ++.. .+.+..+ ++|+.-+.+.+.-. -.+|.+...|||||||||+|
T Consensus 74 ~~~i~~v~Q~~~l~~~~tv~eni~~-~~~~------~~~~~~~~~~~~~~~l~~lgL~--~~~~~~~~~LSgGq~QRvaL 144 (369)
T PRK11000 74 ERGVGMVFQSYALYPHLSVAENMSF-GLKL------AGAKKEEINQRVNQVAEVLQLA--HLLDRKPKALSGGQRQRVAI 144 (369)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHh-HHhh------cCCCHHHHHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHH
Confidence 5679999999999999999776643 2210 1122222 34444333333221 14678888999999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++|||++ ++.++||++++|++|+++..|+++++..
T Consensus 145 AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999875 899999999976 5778999999999999999999988753
No 54
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.2e-41 Score=339.99 Aligned_cols=217 Identities=24% Similarity=0.373 Sum_probs=176.9
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----- 103 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----- 103 (606)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 2 l~~~~l~~~~~--------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~ 72 (240)
T PRK09493 2 IEFKNVSKHFG--------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI-TSGDLIVDGLKVNDPKVDE 72 (240)
T ss_pred EEEEeEEEEEC--------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCChhH
Confidence 68999999873 35699999999999999999999999999999999999876 59999999986532
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhH
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKR 182 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~kr 182 (606)
...++.++|++|++.+++.+|+.+.+.. +.... .+.+.-+ ....+.+++..-.+- .+|.+...+|+|||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~-~~~~~-----~~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 144 (240)
T PRK09493 73 RLIRQEAGMVFQQFYLFPHLTALENVMF-GPLRV-----RGASKEE--AEKQARELLAKVGLAERAHHYPSELSGGQQQR 144 (240)
T ss_pred HHHhhceEEEecccccCCCCcHHHHHHh-HHHHh-----cCCCHHH--HHHHHHHHHHHcCChHHHhcChhhcCHHHHHH
Confidence 2446789999999999999999776643 21110 0111111 112223444433332 4588889999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
+.||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++
T Consensus 145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999877999999999987 46788999999999999999998876
Q ss_pred H
Q psy13765 263 V 263 (606)
Q Consensus 263 ~ 263 (606)
.
T Consensus 224 ~ 224 (240)
T PRK09493 224 I 224 (240)
T ss_pred h
Confidence 4
No 55
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.1e-41 Score=353.79 Aligned_cols=207 Identities=23% Similarity=0.375 Sum_probs=171.3
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhhhcccEEEEccCCCCCCCCc
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INAFRRVSCYIQQDDRLQPLLT 124 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~~~~~~~yv~Q~~~l~~~lt 124 (606)
+++.+|+|+|++|++||+++|+||||||||||+|+|+|+.++ .+|+|.++|.+.. ....++.+||++|++.+++.+|
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP-TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 346799999999999999999999999999999999999876 5999999998653 2345678999999999999999
Q ss_pred HHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCC
Q psy13765 125 IENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202 (606)
Q Consensus 125 v~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPT 202 (606)
+.+.+..... ..+.+..+ ++|+. +++..-++- ..|.+...+||||||||.||+||+.+|++|+|||||
T Consensus 83 v~e~l~~~~~-------~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 83 GRENLEMMGR-------LYGLPKDEAEERAE---ELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred HHHHHHHHHH-------HcCCCHHHHHHHHH---HHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9877654311 01122222 33333 333332332 468888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHH
Q psy13765 203 TGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNY 265 (606)
Q Consensus 203 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~ 265 (606)
+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.+-
T Consensus 153 ~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 153 TGLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999888999999999986 57789999999999999999999987653
No 56
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-41 Score=336.69 Aligned_cols=213 Identities=25% Similarity=0.404 Sum_probs=170.7
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~ 108 (606)
|+++|++++|+.+ .+.+.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.. ..++
T Consensus 1 l~~~~l~~~~~~~----~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~--~~~~ 73 (220)
T cd03293 1 LEVRNVSKTYGGG----GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP-TSGEVLVDGEPVT--GPGP 73 (220)
T ss_pred CeEEEEEEEcCCC----CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECc--cccC
Confidence 4689999987421 1125799999999999999999999999999999999999876 5999999998764 3467
Q ss_pred cEEEEccCCCCCCCCcHHHHHHHc-CCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHH
Q psy13765 109 VSCYIQQDDRLQPLLTIENVMSLL-GLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 109 ~~~yv~Q~~~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~I 185 (606)
.++||+|++.+++.+|+.+.+... ... +++.. .++++ .+++..-++- .+|.+...+|+|||||+.|
T Consensus 74 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~--------~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LSgG~~qrl~l 142 (220)
T cd03293 74 DRGYVFQQDALLPWLTVLDNVALGLELQ--------GVPKAEARERA---EELLELVGLSGFENAYPHQLSGGMRQRVAL 142 (220)
T ss_pred cEEEEecccccccCCCHHHHHHHHHHHc--------CCCHHHHHHHH---HHHHHHcCChhhhhCCcccCCHHHHHHHHH
Confidence 799999999999989987765431 110 11111 12333 2333332332 4577888999999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeec--CCcEEEEcChh
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLS--GGQCLYQGATD 260 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~--~G~~~~~G~~~ 260 (606)
|+||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|+++ .+.+.||++++|+ +|+++..++++
T Consensus 143 a~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 143 ARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999999965 4899999999986 4678999999999 79999888753
No 57
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-41 Score=334.46 Aligned_cols=208 Identities=20% Similarity=0.431 Sum_probs=169.2
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~ 108 (606)
++++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... ..++
T Consensus 1 l~~~~l~~~~~--------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~-~~~~ 70 (210)
T cd03269 1 LEVENVTKRFG--------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP-DSGEVLFDGKPLDI-AARN 70 (210)
T ss_pred CEEEEEEEEEC--------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCCchhH-HHHc
Confidence 46899999872 35699999999999999999999999999999999999876 59999999987643 4567
Q ss_pred cEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHHHHH
Q psy13765 109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLSIA 186 (606)
Q Consensus 109 ~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl~IA 186 (606)
.++|++|++.+++.+|+.+.+..... .. +....+ ++++ .+++..-++ -..+.+...+|+|||||+.||
T Consensus 71 ~i~~~~q~~~~~~~~tv~e~l~~~~~--~~-----~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 140 (210)
T cd03269 71 RIGYLPEERGLYPKMKVIDQLVYLAQ--LK-----GLKKEEARRRI---DEWLERLELSEYANKRVEELSKGNQQKVQFI 140 (210)
T ss_pred cEEEeccCCcCCcCCcHHHHHHHHHH--Hc-----CCChHHHHHHH---HHHHHHcCChHHHhCcHhhCCHHHHHHHHHH
Confidence 89999999999999999776654210 00 111111 2222 233332222 145778889999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|++++.|
T Consensus 141 ~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 141 AAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999878999999999976 467889999999999998754
No 58
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.4e-41 Score=339.58 Aligned_cols=221 Identities=23% Similarity=0.397 Sum_probs=175.8
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NA 105 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~ 105 (606)
++++||++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... ..
T Consensus 1 l~~~~l~~~~~--------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~ 71 (236)
T cd03219 1 LEVRGLTKRFG--------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP-TSGSVLFDGEDITGLPPHE 71 (236)
T ss_pred CeeeeeEEEEC--------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCceEEECCEECCCCCHHH
Confidence 46899999873 35699999999999999999999999999999999999876 59999999986532 22
Q ss_pred -hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccc----cCC-hHHHHHHHHHHHHhcCCcc-cccCCCCCCCCch
Q psy13765 106 -FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSS----QLS-GGQKKRLSIALELINNPRV-MFLDEPTTSNPND 178 (606)
Q Consensus 106 -~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~----~lS-gGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g 178 (606)
.++.++|++|++.+++.+|+.+.+....... ...... ... ...++++. +++..-.+ -..|.+...+|||
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LSgG 147 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQAR-TGSGLLLARARREEREARERAE---ELLERVGLADLADRPAGELSYG 147 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhc-cccccccccccccHHHHHHHHH---HHHHHcCccchhhCChhhCCHH
Confidence 2456999999999999999977765421110 000000 001 11223332 33333233 2568889999999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
||||+.||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.++||++++|++|+++..|+
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecC
Confidence 999999999999999999999999999999999999999999878999999999987 5778999999999999999999
Q ss_pred hhHHH
Q psy13765 259 TDQLV 263 (606)
Q Consensus 259 ~~~~~ 263 (606)
++++.
T Consensus 227 ~~~~~ 231 (236)
T cd03219 227 PDEVR 231 (236)
T ss_pred HHHhc
Confidence 88763
No 59
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=4.4e-41 Score=341.76 Aligned_cols=217 Identities=22% Similarity=0.314 Sum_probs=176.3
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---- 103 (606)
.++++||+++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKFH--------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP-EAGTIRVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEEC--------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccccc
Confidence 488999999873 35699999999999999999999999999999999999876 59999999976431
Q ss_pred -------hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCC
Q psy13765 104 -------NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTS 174 (606)
Q Consensus 104 -------~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~ 174 (606)
...++.++|++|++.+++..|+.+.+.... ... ...+..+ ++++ .+++..-.+- ..|.+...
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~-~~~-----~~~~~~~~~~~~---~~~l~~~gl~~~~~~~~~~ 144 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGP-VIV-----KGEPKEEATARA---RELLAKVGLAGKETSYPRR 144 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHH-HHh-----cCCCHHHHHHHH---HHHHHHcCCcchhhCChhh
Confidence 234678999999999999889876654311 000 0112212 2233 2333322222 35788999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.++||++++|++|+++
T Consensus 145 LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~ 223 (250)
T PRK11264 145 LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIV 223 (250)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999878999999999976 577899999999999999
Q ss_pred EEcChhHHH
Q psy13765 255 YQGATDQLV 263 (606)
Q Consensus 255 ~~G~~~~~~ 263 (606)
+.|+++++.
T Consensus 224 ~~~~~~~~~ 232 (250)
T PRK11264 224 EQGPAKALF 232 (250)
T ss_pred EeCCHHHHh
Confidence 999988764
No 60
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-42 Score=329.58 Aligned_cols=220 Identities=23% Similarity=0.426 Sum_probs=185.9
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--- 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--- 103 (606)
..+..+||.++| +++++++|||+++++||+++++|||||||||.+.++.|+.++ .+|+|.+||.+++.
T Consensus 3 ~~L~a~~l~K~y--------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~-d~G~i~ld~~diT~lPm 73 (243)
T COG1137 3 STLVAENLAKSY--------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP-DSGKILLDDEDITKLPM 73 (243)
T ss_pred cEEEehhhhHhh--------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec-CCceEEECCcccccCCh
Confidence 468889999886 567899999999999999999999999999999999999887 49999999987643
Q ss_pred -hhhcccEEEEccCCCCCCCCcHHHHHHH-cCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765 104 -NAFRRVSCYIQQDDRLQPLLTIENVMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQK 180 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~-~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~ 180 (606)
...|..+||+||++..|..+||++.+.. +.+... + ..--|+| .-+.+|+.+-.+. +.|.+..+||||||
T Consensus 74 ~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d-----~~~~~~~--~~l~~LL~ef~i~hlr~~~a~sLSGGER 145 (243)
T COG1137 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-D-----LKKAERK--EELDALLEEFHITHLRDSKAYSLSGGER 145 (243)
T ss_pred HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-c-----hhHHHHH--HHHHHHHHHhchHHHhcCcccccccchH
Confidence 3345679999999999999999665543 333221 1 1112222 2234666666664 88999999999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
||++|||||+.+|+.++||||++|.||.+..+|.++++.|+++|..|++|-|+..+ ...+|||.+++.+|++..+|+++
T Consensus 146 RR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVRE-tL~i~dRaYIi~~G~vla~G~p~ 224 (243)
T COG1137 146 RRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRE-TLDICDRAYIISDGKVLAEGSPE 224 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHH-HHhhhheEEEEecCeEEecCCHH
Confidence 99999999999999999999999999999999999999999999999999999885 66999999999999999999999
Q ss_pred HHHH
Q psy13765 261 QLVN 264 (606)
Q Consensus 261 ~~~~ 264 (606)
++.+
T Consensus 225 ei~~ 228 (243)
T COG1137 225 EIVN 228 (243)
T ss_pred HHhc
Confidence 9864
No 61
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.3e-41 Score=336.07 Aligned_cols=215 Identities=27% Similarity=0.390 Sum_probs=173.5
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--hhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--NAF 106 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--~~~ 106 (606)
|+++||++.++. +++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~~------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKK------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP-TSGTAYINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCC------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccchHHH
Confidence 478999998731 125799999999999999999999999999999999999876 59999999986532 345
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl~ 184 (606)
++.++|++|++.+++.+|+.+.+..... ..+.+..+ ++++ .+++..-++ -..|.+...+|+|||||++
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~-------~~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 143 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYAR-------LKGLPKSEIKEEV---ELLLRVLGLTDKANKRARTLSGGMKRKLS 143 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHH-------HcCCCHHHHHHHH---HHHHHHcCCHHHHhChhhhCCHHHHHHHH
Confidence 6779999999999999998776653210 00112111 2232 223322223 1457888899999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+++++
T Consensus 144 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999999999976 599999999987 46788999999999999999988764
No 62
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.7e-41 Score=336.00 Aligned_cols=216 Identities=22% Similarity=0.407 Sum_probs=173.6
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NA 105 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~ 105 (606)
|+++||+++++ ++++++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... ..
T Consensus 1 l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~ 71 (222)
T cd03224 1 LEVENLNAGYG--------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP-RSGSIRFDGRDITGLPPHE 71 (222)
T ss_pred CEEeeEEeecC--------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcCCCCHHH
Confidence 46899999862 35699999999999999999999999999999999999876 59999999976432 22
Q ss_pred -hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765 106 -FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 106 -~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~ 184 (606)
.++.++|++|++.+++.+|+.+.+....... . ..-.+.++.-+.+.+...+ -.+|.+...+|+|||||+.
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~------~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~ 142 (222)
T cd03224 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYAR--R------RAKRKARLERVYELFPRLK-ERRKQLAGTLSGGEQQMLA 142 (222)
T ss_pred HHhcCeEEeccccccCCCCcHHHHHHHHhhhc--C------chhHHHHHHHHHHHHHhhh-hhhhCchhhCCHHHHHHHH
Confidence 3567999999999999999976654321110 0 0112233322222221100 1357888999999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|+++..|+++++.
T Consensus 143 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 143 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999878899999999976 577899999999999999999987753
No 63
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-41 Score=346.69 Aligned_cols=232 Identities=25% Similarity=0.395 Sum_probs=180.4
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---- 103 (606)
.|+++||++.|+.+. ...+.+|+|||++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 2 ~l~~~~l~~~y~~~~---~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~ 77 (287)
T PRK13637 2 SIKIENLTHIYMEGT---PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP-TSGKIIIDGVDITDKKVK 77 (287)
T ss_pred EEEEEEEEEECCCCC---ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEEEECCEECCCcCcc
Confidence 488999999974210 0125799999999999999999999999999999999999877 59999999987532
Q ss_pred -hhhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHHH-HHHHHHHHHhcCCcc---cccCCCCCCCCc
Q psy13765 104 -NAFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQK-KRLSIALELINNPRV---MFLDEPTTSNPN 177 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~---~~~de~~~~~s~ 177 (606)
...++.+|||+|++. .+...|+.+.+.. +... .+++.-+. +++. +++..-.+ -..|.+...+||
T Consensus 78 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~-~~~~------~~~~~~~~~~~~~---~~l~~~gL~~~~~~~~~~~~LSg 147 (287)
T PRK13637 78 LSDIRKKVGLVFQYPEYQLFEETIEKDIAF-GPIN------LGLSEEEIENRVK---RAMNIVGLDYEDYKDKSPFELSG 147 (287)
T ss_pred HHHHhhceEEEecCchhccccccHHHHHHh-HHHH------CCCCHHHHHHHHH---HHHHHcCCCchhhccCCcccCCH
Confidence 345678999999973 2234688665542 2110 11233222 2333 33333233 246889999999
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~ 256 (606)
|||||+.||+||+.+|++|+|||||+|||+.++..+.++|++++++ |+|||++||+++ .+.++|||+++|++|++++.
T Consensus 148 Gq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~ 226 (287)
T PRK13637 148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQ 226 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999976 46789999999999999999
Q ss_pred cChhHHHH---HHHhCCCCCC
Q psy13765 257 GATDQLVN---YLSSVNLPCP 274 (606)
Q Consensus 257 G~~~~~~~---~f~~~g~~~~ 274 (606)
|+++++.+ .+...|+..|
T Consensus 227 g~~~~~~~~~~~~~~~~~~~~ 247 (287)
T PRK13637 227 GTPREVFKEVETLESIGLAVP 247 (287)
T ss_pred CCHHHHHhCHHHHHHcCCCCC
Confidence 99988753 2334455443
No 64
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.7e-41 Score=338.40 Aligned_cols=212 Identities=26% Similarity=0.369 Sum_probs=169.5
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-----CCCCccEEEECCccCC-
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR-----SNGVTGQILTNGHSRN- 102 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~-----~~~~~G~I~~~G~~~~- 102 (606)
|+++||+++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|++..
T Consensus 1 i~~~~l~~~~~--------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~-~~G~i~~~g~~~~~ 71 (227)
T cd03260 1 IELRDLNVYYG--------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP-DEGEVLLDGKDIYD 71 (227)
T ss_pred CEEEEEEEEcC--------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC-CCeEEEECCEEhhh
Confidence 46899999862 357999999999999999999999999999999999997 55 5999999998643
Q ss_pred ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCC--CCC
Q psy13765 103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEP--TTS 174 (606)
Q Consensus 103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~--~~~ 174 (606)
...+++.++|++|++.++ .+|+.+.+... ... .. ..+.. .++++.-+.+.+ ++- ..+.+ ...
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~-~~~-~~----~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~~~ 141 (227)
T cd03260 72 LDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYG-LRL-HG----IKLKEELDERVEEALRKA---ALWDEVKDRLHALG 141 (227)
T ss_pred cchHHHHHHhhEEEEecCchhc-cccHHHHHHhH-HHh-cC----CCcHHHHHHHHHHHHHHc---CCChHHhccCCccc
Confidence 234567899999999888 78987665431 110 00 01111 234443222322 221 23445 589
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
+|||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ .+.++||++++|++|+++
T Consensus 142 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 142 LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLV 219 (227)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999999999887 99999999986 567899999999999999
Q ss_pred EEcChhH
Q psy13765 255 YQGATDQ 261 (606)
Q Consensus 255 ~~G~~~~ 261 (606)
+.|++++
T Consensus 220 ~~g~~~~ 226 (227)
T cd03260 220 EFGPTEQ 226 (227)
T ss_pred EecCccc
Confidence 9998765
No 65
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-41 Score=357.77 Aligned_cols=219 Identities=22% Similarity=0.411 Sum_probs=181.1
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NA 105 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~ 105 (606)
..|+++|+++++ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++... ..
T Consensus 18 ~~l~l~~v~~~~--------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-~~G~I~i~g~~i~~~~~ 88 (377)
T PRK11607 18 PLLEIRNLTKSF--------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP-TAGQIMLDGVDLSHVPP 88 (377)
T ss_pred ceEEEEeEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECCCCCH
Confidence 469999999987 235699999999999999999999999999999999999877 59999999987532 33
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~ 184 (606)
.++.+|||+|++.++|.+||.+.+.. ++.. ...+..+ ++|+.-..+++.-. -++|..+..|||||||||+
T Consensus 89 ~~r~ig~vfQ~~~lfp~ltv~eNi~~-~l~~------~~~~~~~~~~~v~~~l~~l~L~--~~~~~~~~~LSgGq~QRVa 159 (377)
T PRK11607 89 YQRPINMMFQSYALFPHMTVEQNIAF-GLKQ------DKLPKAEIASRVNEMLGLVHMQ--EFAKRKPHQLSGGQRQRVA 159 (377)
T ss_pred HHCCEEEEeCCCccCCCCCHHHHHHH-HHHH------cCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHH
Confidence 56789999999999999999776643 2221 1123333 34543333333221 1568888899999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
|||||+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++|||+. ++..++|++++|++|+++..|+++++.
T Consensus 160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998764 899999999976 578999999999999999999999875
Q ss_pred H
Q psy13765 264 N 264 (606)
Q Consensus 264 ~ 264 (606)
+
T Consensus 239 ~ 239 (377)
T PRK11607 239 E 239 (377)
T ss_pred h
Confidence 4
No 66
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=4e-41 Score=333.85 Aligned_cols=209 Identities=22% Similarity=0.400 Sum_probs=169.7
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR 107 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~ 107 (606)
|+++|++++++ ++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... ...+
T Consensus 1 i~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~v~~~g~~~~~~~~~~ 71 (213)
T cd03301 1 VELENVTKRFG--------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP-TSGRIYIGGRDVTDLPPKD 71 (213)
T ss_pred CEEEeeEEEEC--------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCCccc
Confidence 46899999873 35799999999999999999999999999999999999876 59999999986532 2234
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~I 185 (606)
+.++|++|++.+++..|+.+.+... .. . ...+..+ ++++. +++..-++- ..|.+...+|+|||||+.|
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~-~~-~-----~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qr~~l 141 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFG-LK-L-----RKVPKDEIDERVR---EVAELLQIEHLLDRKPKQLSGGQRQRVAL 141 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHH-HH-h-----cCCCHHHHHHHHH---HHHHHcCCHHHHhCChhhCCHHHHHHHHH
Confidence 6799999999999889987766432 11 0 0122222 33332 233322332 4688899999999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++|++|++++.|
T Consensus 142 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 142 GRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999874 899999999976 577899999999999998876
No 67
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3e-41 Score=332.99 Aligned_cols=204 Identities=25% Similarity=0.423 Sum_probs=160.3
Q ss_pred EEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhccc
Q psy13765 30 KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRV 109 (606)
Q Consensus 30 ~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~ 109 (606)
+++|++++|+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+......++.
T Consensus 1 ~~~~l~~~~~~-------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~ 72 (205)
T cd03226 1 RIENISFSYKK-------GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE-SSGSILLNGKPIKAKERRKS 72 (205)
T ss_pred CcccEEEEeCC-------cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEhhhHHhhcc
Confidence 36789988631 15799999999999999999999999999999999999876 59999999987644455678
Q ss_pred EEEEccCCCC-CCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHh
Q psy13765 110 SCYIQQDDRL-QPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE 188 (606)
Q Consensus 110 ~~yv~Q~~~l-~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~a 188 (606)
++|++|++.. +...|+.+.+... ... . +-+++++.-+.+.+.-.+ ..|.+...+|+|||||+.||+|
T Consensus 73 i~~~~q~~~~~~~~~tv~e~l~~~-~~~---~------~~~~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~qrv~lara 140 (205)
T cd03226 73 IGYVMQDVDYQLFTDSVREELLLG-LKE---L------DAGNEQAETVLKDLDLYA--LKERHPLSLSGGQKQRLAIAAA 140 (205)
T ss_pred eEEEecChhhhhhhccHHHHHhhh-hhh---c------CccHHHHHHHHHHcCCch--hcCCCchhCCHHHHHHHHHHHH
Confidence 9999999742 3456876655431 110 0 011233322222222111 4577888899999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 189 L~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.++||++++|++|+++
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 141 LLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999999999878999999999987 467899999999999874
No 68
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=7.7e-41 Score=343.96 Aligned_cols=217 Identities=20% Similarity=0.351 Sum_probs=175.5
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---- 103 (606)
.|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 7 LVDMRGVSFTR--------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP-DHGEILFDGENIPAMSRS 77 (269)
T ss_pred eEEEeCeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEccccChh
Confidence 58999999987 235699999999999999999999999999999999999876 59999999976531
Q ss_pred --hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchh
Q psy13765 104 --NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQ 179 (606)
Q Consensus 104 --~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~ 179 (606)
...++.++|++|++.+++.+|+.+.+... +... . .++..+ ++++ .+++..-.+- .+|.+...|||||
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~-~~~~-~----~~~~~~~~~~~---~~~l~~~gl~~~~~~~~~~LSgGq 148 (269)
T PRK11831 78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYP-LREH-T----QLPAPLLHSTV---MMKLEAVGLRGAAKLMPSELSGGM 148 (269)
T ss_pred hHHHHhhcEEEEecccccCCCCCHHHHHHHH-HHHc-c----CCCHHHHHHHH---HHHHHHcCChhhhhCChhhCCHHH
Confidence 12456799999999999999987765431 1100 0 112111 1222 2333322222 4678889999999
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
|||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|+
T Consensus 149 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~ 227 (269)
T PRK11831 149 ARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGS 227 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999775 899999999976 5778999999999999999999
Q ss_pred hhHHH
Q psy13765 259 TDQLV 263 (606)
Q Consensus 259 ~~~~~ 263 (606)
++++.
T Consensus 228 ~~~~~ 232 (269)
T PRK11831 228 AQALQ 232 (269)
T ss_pred HHHHh
Confidence 88764
No 69
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=4.5e-41 Score=334.67 Aligned_cols=213 Identities=23% Similarity=0.387 Sum_probs=171.2
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INAF 106 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~~ 106 (606)
++++|+++.++.. ...+++++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.. ...+
T Consensus 2 l~~~~v~~~~~~~----~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~ 76 (218)
T cd03266 2 ITADALTKRFRDV----KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP-DAGFATVDGFDVVKEPAEA 76 (218)
T ss_pred eEEEEEEEecCCC----CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CCceEEECCEEcccCHHHH
Confidence 6889999987421 0112699999999999999999999999999999999999876 5999999998653 2345
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~ 184 (606)
++.++|++|++.+++.+|+.+.+...... .+.+..+ ++++. +++..-.+- .++++...+|+|||||++
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 146 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGL-------YGLKGDELTARLE---ELADRLGMEELLDRRVGGFSTGMRQKVA 146 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHH-------cCCCHHHHHHHHH---HHHHHcCCHHHHhhhhhhcCHHHHHHHH
Confidence 67899999999999999997766532100 0112212 23333 222222332 467888899999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+++|++++|++|++++.|
T Consensus 147 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 147 IARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999878999999999976 577899999999999998754
No 70
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=4.8e-41 Score=339.94 Aligned_cols=221 Identities=26% Similarity=0.377 Sum_probs=176.2
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----- 103 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----- 103 (606)
|+++||+++|+ .++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 2 l~~~~l~~~~~-------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 2 LEVENLSKVYP-------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP-SSGSILLEGTDITKLRGKK 73 (243)
T ss_pred eEEEeeeeecC-------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CccEEEECCEEhhhCCHHH
Confidence 67899999862 135699999999999999999999999999999999999876 59999999976431
Q ss_pred -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCcccc---CCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCch
Q psy13765 104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQ---NTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPND 178 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~---~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g 178 (606)
..+++.++|++|++.+++.+|+.+.+.. +..... ....+.....+++|+. +++..-++ -..|.+...+|+|
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LSgG 149 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIERLTVLENVLH-GRLGYKPTWRSLLGRFSEEDKERAL---SALERVGLADKAYQRADQLSGG 149 (243)
T ss_pred HHHHHhheEEEcCCCcccccccHHHHHhh-cccccccchhhhhccccHHHHHHHH---HHHHHcCcHhhhcCCcccCCHH
Confidence 2356789999999999999999776643 221110 0000011122334443 22222233 2568899999999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||++++|++|++++.|
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999764 899999999987 467899999999999999999
Q ss_pred ChhHH
Q psy13765 258 ATDQL 262 (606)
Q Consensus 258 ~~~~~ 262 (606)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 98765
No 71
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-40 Score=343.42 Aligned_cols=228 Identities=28% Similarity=0.370 Sum_probs=178.4
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~ 104 (606)
.|+++|++++|+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ..
T Consensus 4 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~ 75 (274)
T PRK13647 4 IIEVEDLHFRYK-------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP-QRGRVKVMGREVNAENEK 75 (274)
T ss_pred eEEEEEEEEEeC-------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CceEEEECCEECCCCCHH
Confidence 589999999873 124699999999999999999999999999999999999876 5999999998653 23
Q ss_pred hhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhH
Q psy13765 105 AFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKR 182 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~kr 182 (606)
..++.++||+|++. .++..|+.+.+.. +... .+++..+ ++++.-+.+.+.-. -..|.+...+|||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~tv~e~l~~-~~~~------~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgG~~qr 146 (274)
T PRK13647 76 WVRSKVGLVFQDPDDQVFSSTVWDDVAF-GPVN------MGLDKDEVERRVEEALKAVRMW--DFRDKPPYHLSYGQKKR 146 (274)
T ss_pred HHHhhEEEEecChhhhhccCcHHHHHHh-hHHH------cCCCHHHHHHHHHHHHHHCCCH--HHhcCChhhCCHHHHHH
Confidence 45678999999973 3445688666542 2211 1233322 23333333332221 14678888999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
+.||+||+.+|++|+|||||+|||+.++.++.++|++++++|+|||++||+++ .+.++|||+++|++|++++.|+++++
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999999999877999999999976 46689999999999999999998754
Q ss_pred H--HHHHhCCCCC
Q psy13765 263 V--NYLSSVNLPC 273 (606)
Q Consensus 263 ~--~~f~~~g~~~ 273 (606)
. +.++..|...
T Consensus 226 ~~~~~~~~~~~~~ 238 (274)
T PRK13647 226 TDEDIVEQAGLRL 238 (274)
T ss_pred cCHHHHHHcCCCC
Confidence 2 2333445443
No 72
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-41 Score=338.29 Aligned_cols=216 Identities=25% Similarity=0.384 Sum_probs=175.8
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----- 102 (606)
.++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++..
T Consensus 2 ~l~~~~l~~~~~--------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~ 72 (242)
T PRK11124 2 SIQLNGINCFYG--------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP-RSGTLNIAGNHFDFSKTP 72 (242)
T ss_pred EEEEEeeEEEEC--------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEeccccccc
Confidence 588999999873 35699999999999999999999999999999999999876 5999999998642
Q ss_pred ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCC
Q psy13765 103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNP 176 (606)
Q Consensus 103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s 176 (606)
....++.++|++|++.+++.+|+.+.+...... .. +.+..+ +++ +.+++..-++- .+|.+...+|
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~-~~-----~~~~~~~~~~---~~~~l~~~gl~~~~~~~~~~LS 143 (242)
T PRK11124 73 SDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCR-VL-----GLSKDQALAR---AEKLLERLRLKPYADRFPLHLS 143 (242)
T ss_pred chhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHH-Hc-----CCCHHHHHHH---HHHHHHHcCChhhhhCChhhCC
Confidence 123467899999999999999987765421110 00 011111 222 23333333332 5688888999
Q ss_pred chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256 (606)
Q Consensus 177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~ 256 (606)
+|||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+.+++|++++|++|++++.
T Consensus 144 ~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877999999999987 46688999999999999999
Q ss_pred cChhHH
Q psy13765 257 GATDQL 262 (606)
Q Consensus 257 G~~~~~ 262 (606)
|+++++
T Consensus 223 ~~~~~~ 228 (242)
T PRK11124 223 GDASCF 228 (242)
T ss_pred CCHHHh
Confidence 998764
No 73
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-40 Score=349.26 Aligned_cols=233 Identities=23% Similarity=0.355 Sum_probs=181.9
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---- 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---- 102 (606)
..|+++||++.|+.+. ...+.+|+|||++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..
T Consensus 20 ~~l~~~nl~~~y~~~~---~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p-~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 20 IILRVKNLYCVFDEKQ---ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS-KYGTIQVGDIYIGDKKN 95 (320)
T ss_pred ceEEEEeEEEEeCCCC---cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEECCEEcccccc
Confidence 4699999999985210 0124699999999999999999999999999999999999876 5999999997542
Q ss_pred ---------------hhhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCc
Q psy13765 103 ---------------INAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPR 164 (606)
Q Consensus 103 ---------------~~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~ 164 (606)
...+++.++||+|++ .+++. |+.+.+. ++... .+.+..+ ++|+. +++..-+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~-~~~~~------~~~~~~~~~~~~~---~~l~~~g 164 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIM-FGPVA------LGVKKSEAKKLAK---FYLNKMG 164 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHH-hhHHh------cCCCHHHHHHHHH---HHHHHcC
Confidence 134577899999987 45654 7766553 22211 0123222 23333 3333333
Q ss_pred c--cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q psy13765 165 V--MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF 242 (606)
Q Consensus 165 ~--~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 242 (606)
+ -.++++...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.|
T Consensus 165 L~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~a 243 (320)
T PRK13631 165 LDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVA 243 (320)
T ss_pred CChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhC
Confidence 3 1468888999999999999999999999999999999999999999999999999878999999999976 466899
Q ss_pred ceeeeecCCcEEEEcChhHHHH---HHHhCCCCCCC
Q psy13765 243 DQVYLLSGGQCLYQGATDQLVN---YLSSVNLPCPK 275 (606)
Q Consensus 243 D~v~~L~~G~~~~~G~~~~~~~---~f~~~g~~~~~ 275 (606)
|++++|++|+++..|+++++.. .++..|...|.
T Consensus 244 dri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 244 DEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred CEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 9999999999999999987643 34445555443
No 74
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-40 Score=346.60 Aligned_cols=232 Identities=23% Similarity=0.363 Sum_probs=180.6
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----- 102 (606)
.++++||+++|+.+. ...+++|+|||++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..
T Consensus 2 ~l~~~~l~~~y~~~~---~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~ 77 (290)
T PRK13634 2 DITFQKVEHRYQYKT---PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP-TSGTVTIGERVITAGKKN 77 (290)
T ss_pred EEEEEEEEEEECCCC---cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEECcccccc
Confidence 488999999984210 0125699999999999999999999999999999999999876 5999999998653
Q ss_pred --hhhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc--cccCCCCCCC
Q psy13765 103 --INAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV--MFLDEPTTSN 175 (606)
Q Consensus 103 --~~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~--~~~de~~~~~ 175 (606)
....++.+|||+|++ .+++ .|+.+.+.. +... ..++.-+ ++++. +++..-++ -++|.+...|
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~-~~~~------~~~~~~~~~~~~~---~~l~~~gL~~~~~~~~~~~L 146 (290)
T PRK13634 78 KKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICF-GPMN------FGVSEEDAKQKAR---EMIELVGLPEELLARSPFEL 146 (290)
T ss_pred chHHHHHhhEEEEeeCchhhhhh-hhHHHHHHH-HHHH------cCCCHHHHHHHHH---HHHHHCCCChhhhhCCcccC
Confidence 234567899999986 4554 587665542 2110 0122222 23443 33333333 2468889999
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
|+|||||+.||+||+.+|++|+|||||+|||+.++..+.++|++++++ |.|||++||+++ .+.++|||+++|++|+++
T Consensus 147 SgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~ 225 (290)
T PRK13634 147 SGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVF 225 (290)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999875 999999999977 577899999999999999
Q ss_pred EEcChhHHHH---HHHhCCCCCCC
Q psy13765 255 YQGATDQLVN---YLSSVNLPCPK 275 (606)
Q Consensus 255 ~~G~~~~~~~---~f~~~g~~~~~ 275 (606)
+.|+++++.+ .+...+..+|.
T Consensus 226 ~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 226 LQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EECCHHHHhcCHHHHHHCCCCCCH
Confidence 9999988742 34445555443
No 75
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-40 Score=347.79 Aligned_cols=223 Identities=25% Similarity=0.356 Sum_probs=175.5
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC------
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR------ 101 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~------ 101 (606)
.|+++||+++|+.+. .....+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.
T Consensus 2 ~i~~~~l~~~y~~~~---~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p-~~G~i~~~g~~~~~~~~~ 77 (305)
T PRK13651 2 QIKVKNIVKIFNKKL---PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP-DTGTIEWIFKDEKNKKKT 77 (305)
T ss_pred EEEEEEEEEEECCCC---CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEEeceeccccccc
Confidence 488999999985320 1124699999999999999999999999999999999999877 589999998643
Q ss_pred ---------------------ChhhhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHH
Q psy13765 102 ---------------------NINAFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALE 158 (606)
Q Consensus 102 ---------------------~~~~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~ 158 (606)
.....++.+|||+|++. .+...||.+.+. +++... +++.- .++|+.-+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~-~~~~~~------~~~~~~~~~~~~~~l~ 150 (305)
T PRK13651 78 KEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDII-FGPVSM------GVSKEEAKKRAAKYIE 150 (305)
T ss_pred ccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHH-hhHHHc------CCCHHHHHHHHHHHHH
Confidence 12345678999999852 233468866654 332210 12221 2344443333
Q ss_pred HhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q psy13765 159 LINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238 (606)
Q Consensus 159 L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i 238 (606)
.+.-.. -.+|.++..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||+. .+
T Consensus 151 ~~gL~~-~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~ 228 (305)
T PRK13651 151 LVGLDE-SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NV 228 (305)
T ss_pred HcCCCh-hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HH
Confidence 332210 2578899999999999999999999999999999999999999999999999999878999999999976 47
Q ss_pred HhhcceeeeecCCcEEEEcChhHHH
Q psy13765 239 FQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 239 ~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
.+.|||+++|++|++++.|+++++.
T Consensus 229 ~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 229 LEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHh
Confidence 7899999999999999999998875
No 76
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-41 Score=338.05 Aligned_cols=216 Identities=24% Similarity=0.422 Sum_probs=175.8
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA 105 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~ 105 (606)
++++|++++|+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.. ...
T Consensus 1 l~~~~l~~~~~~-------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYGG-------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP-TSGEIFIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeCC-------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCeEcCcCChHH
Confidence 468999998731 15699999999999999999999999999999999999876 5999999998643 234
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc---ccCCCCCCCCchhhh
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM---FLDEPTTSNPNDQKK 181 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~---~~de~~~~~s~g~~k 181 (606)
.++.++|++|++.+++.+|+.+.+.... . . .+.+.. .++++ .+++..-.+- ..|++...+|+||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~-~-~-----~~~~~~~~~~~~---~~~l~~l~l~~~~~~~~~~~~LS~G~~q 142 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVP-K-L-----LKWPKEKIRERA---DELLALVGLDPAEFADRYPHELSGGQQQ 142 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHH-H-H-----cCCCHHHHHHHH---HHHHHHcCCCcHHHHhcChhhCCHHHHH
Confidence 5678999999999999999976664321 0 0 111211 22333 2333333332 468888999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
|+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++|++++|++|++++.|+++
T Consensus 143 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 221 (242)
T cd03295 143 RVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPD 221 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999875 899999999986 567899999999999999999987
Q ss_pred HHH
Q psy13765 261 QLV 263 (606)
Q Consensus 261 ~~~ 263 (606)
++.
T Consensus 222 ~~~ 224 (242)
T cd03295 222 EIL 224 (242)
T ss_pred HHH
Confidence 764
No 77
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-41 Score=336.89 Aligned_cols=216 Identities=21% Similarity=0.391 Sum_probs=175.4
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~ 104 (606)
.++++|++++++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++... .
T Consensus 5 ~l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 5 MLSFDKVSAHYG--------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA-TSGRIVFDGKDITDWQTA 75 (237)
T ss_pred EEEEEeEEEeeC--------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCceEEECCEecCCCCHH
Confidence 589999999872 35799999999999999999999999999999999999876 59999999986532 2
Q ss_pred -hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhH
Q psy13765 105 -AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKR 182 (606)
Q Consensus 105 -~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~kr 182 (606)
..++.++|++|++.+++.+|+.+.+...... .+ ..-.++++.-+.+.+. .+. ..+.+...+|+|||||
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~--~~------~~~~~~~~~~~l~~~~--~l~~~~~~~~~~LS~G~~qr 145 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFF--AE------RDQFQERIKWVYELFP--RLHERRIQRAGTMSGGEQQM 145 (237)
T ss_pred HHHHhCEEEeccCcccCCCCcHHHHHHHhhhc--cC------hhHHHHHHHHHHHHHH--HHHHHHhCchhhCCHHHHHH
Confidence 2456799999999999989987766442110 00 0111222222222221 011 3467888999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
+.||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||++++|++|++++.|+++++
T Consensus 146 l~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999888999999999976 57799999999999999999999877
Q ss_pred H
Q psy13765 263 V 263 (606)
Q Consensus 263 ~ 263 (606)
.
T Consensus 225 ~ 225 (237)
T PRK11614 225 L 225 (237)
T ss_pred h
Confidence 4
No 78
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-40 Score=343.53 Aligned_cols=227 Identities=25% Similarity=0.374 Sum_probs=179.4
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~ 104 (606)
.|+++||+++|+.+ +.+.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ..
T Consensus 4 ~l~~~~l~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~ 77 (279)
T PRK13650 4 IIEVKNLTFKYKED-----QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA-ESGQIIIDGDLLTEENVW 77 (279)
T ss_pred eEEEEeEEEEcCCC-----CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEECCcCcHH
Confidence 58999999997421 224699999999999999999999999999999999999877 5999999998753 23
Q ss_pred hhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765 105 AFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKK 181 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k 181 (606)
..++.++||+|++. .++..|+.+.+.. +... .+++.-+ ++++.-+.+. -++- ..|.++..+||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~-~~~~------~~~~~~~~~~~~~~~l~~---~gL~~~~~~~~~~LSgGq~q 147 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAF-GLEN------KGIPHEEMKERVNEALEL---VGMQDFKEREPARLSGGQKQ 147 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHh-hHHh------CCCCHHHHHHHHHHHHHH---CCCHhHhhCCcccCCHHHHH
Confidence 45678999999973 6677788766542 2211 1122222 2333322222 2332 468888999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
|+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++. + ..||++++|++|+++..|+++
T Consensus 148 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~~~g~~~ 225 (279)
T PRK13650 148 RVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKNGQVESTSTPR 225 (279)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999875 9999999999864 5 579999999999999999998
Q ss_pred HHHH---HHHhCCCC
Q psy13765 261 QLVN---YLSSVNLP 272 (606)
Q Consensus 261 ~~~~---~f~~~g~~ 272 (606)
++.+ .++..|++
T Consensus 226 ~~~~~~~~~~~~~~~ 240 (279)
T PRK13650 226 ELFSRGNDLLQLGLD 240 (279)
T ss_pred HHHcChHHHHHcCCC
Confidence 7653 23444544
No 79
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.8e-40 Score=338.80 Aligned_cols=217 Identities=23% Similarity=0.361 Sum_probs=176.3
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----- 102 (606)
.|+++||++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..
T Consensus 5 ~l~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~ 75 (257)
T PRK10619 5 KLNVIDLHKRYG--------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-SEGSIVVNGQTINLVRDK 75 (257)
T ss_pred cEEEeeeEEEEC--------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEccccccc
Confidence 489999999873 35799999999999999999999999999999999999876 5899999997542
Q ss_pred -----------hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc--cc
Q psy13765 103 -----------INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM--FL 168 (606)
Q Consensus 103 -----------~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~--~~ 168 (606)
...+++.++|++|++.+++.+|+.+.+.... .... ....-+ ++++ .+++..-.+- ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~-~~~~-----~~~~~~~~~~~---~~~l~~~gl~~~~~ 146 (257)
T PRK10619 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP-IQVL-----GLSKQEARERA---VKYLAKVGIDERAQ 146 (257)
T ss_pred ccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHH-HHhC-----CCCHHHHHHHH---HHHHHHcCCChhhh
Confidence 1245678999999999999999866654211 0000 111111 2333 2333332331 24
Q ss_pred CCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765 169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248 (606)
Q Consensus 169 de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 248 (606)
+.+...+|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++|||+++|
T Consensus 147 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l 225 (257)
T PRK10619 147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFL 225 (257)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 7888999999999999999999999999999999999999999999999999878999999999976 577789999999
Q ss_pred cCCcEEEEcChhHHH
Q psy13765 249 SGGQCLYQGATDQLV 263 (606)
Q Consensus 249 ~~G~~~~~G~~~~~~ 263 (606)
++|++++.|+++++.
T Consensus 226 ~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 226 HQGKIEEEGAPEQLF 240 (257)
T ss_pred ECCEEEEeCCHHHhh
Confidence 999999999988764
No 80
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=7.1e-41 Score=333.24 Aligned_cols=208 Identities=29% Similarity=0.444 Sum_probs=164.3
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h-
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N- 104 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~- 104 (606)
|+++||+++|+.+ .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... .
T Consensus 1 l~~~~l~~~~~~~----~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~ 75 (218)
T cd03255 1 IELKNLSKTYGGG----GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP-TSGEVRVDGTDISKLSEKE 75 (218)
T ss_pred CeEeeeEEEecCC----CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC-CceeEEECCEehhhcchhH
Confidence 4689999987421 0115799999999999999999999999999999999999876 59999999986532 1
Q ss_pred --h-hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCchh
Q psy13765 105 --A-FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPNDQ 179 (606)
Q Consensus 105 --~-~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~ 179 (606)
. .++.++|++|++.+++.+|+.+.+.... .. .+.+.. .++++. +++..-.+- .+|.+...+|+||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~-~~------~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~ 145 (218)
T cd03255 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPL-LL------AGVPKKERRERAE---ELLERVGLGDRLNHYPSELSGGQ 145 (218)
T ss_pred HHHHHhhcEEEEeeccccCCCCcHHHHHHHHH-hh------cCCCHHHHHHHHH---HHHHHcCCchhhhcChhhcCHHH
Confidence 1 3467999999999999999977665421 00 011111 223333 222222332 4578888999999
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
|||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|+++. +. .||++++|++|++
T Consensus 146 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 146 QQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999999999987 58999999999874 54 8999999999974
No 81
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=335.70 Aligned_cols=217 Identities=21% Similarity=0.414 Sum_probs=176.4
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---- 103 (606)
.++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~--------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 3 TLTAKNLAKAYK--------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR-DAGNIIIDDEDISLLPLH 73 (241)
T ss_pred eEEEeCcEEEeC--------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHH
Confidence 588999999873 35799999999999999999999999999999999999876 59999999986532
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhh
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRV-MFLDEPTTSNPNDQKK 181 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~k 181 (606)
...++.++|++|++.+++.+|+.+.+... .. . . ..++.. .++++. +++..-.+ -..+.+...+|+||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~-~~-~-~---~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~q 144 (241)
T PRK10895 74 ARARRGIGYLPQEASIFRRLSVYDNLMAV-LQ-I-R---DDLSAEQREDRAN---ELMEEFHIEHLRDSMGQSLSGGERR 144 (241)
T ss_pred HHHHhCeEEeccCCcccccCcHHHHHhhh-hh-c-c---cccCHHHHHHHHH---HHHHHcCCHHHhhcchhhCCHHHHH
Confidence 22456799999999999989987665432 10 0 0 011211 123332 33332222 1457888999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~ 261 (606)
|+.||+||+.+|++|+|||||+|||+.++..+.+.+++++++|+|||+++|++. .+.+.||++++|++|++++.|++++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 223 (241)
T PRK10895 145 RVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTE 223 (241)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHH
Confidence 999999999999999999999999999999999999999878999999999976 5778999999999999999999887
Q ss_pred HH
Q psy13765 262 LV 263 (606)
Q Consensus 262 ~~ 263 (606)
+.
T Consensus 224 ~~ 225 (241)
T PRK10895 224 IL 225 (241)
T ss_pred Hh
Confidence 64
No 82
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-40 Score=343.79 Aligned_cols=221 Identities=24% Similarity=0.383 Sum_probs=176.1
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---- 103 (606)
.++++||++.|+.+. ...+.+|+|||++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 2 ~l~~~~l~~~y~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p-~~G~i~~~g~~i~~~~~~ 77 (286)
T PRK13646 2 TIRFDNVSYTYQKGT---PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP-TTGTVTVDDITITHKTKD 77 (286)
T ss_pred EEEEEEEEEEECCCC---ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEECcccccc
Confidence 589999999984210 0124699999999999999999999999999999999999876 59999999986531
Q ss_pred ---hhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc--ccCCCCCCC
Q psy13765 104 ---NAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM--FLDEPTTSN 175 (606)
Q Consensus 104 ---~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~--~~de~~~~~ 175 (606)
..+++.+|||+|++ .+++ .|+.+.+.. +... .+++..+ +++ +.+++..-++- ..|.+...+
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~-~~~~------~~~~~~~~~~~---~~~~l~~~gL~~~~~~~~~~~L 146 (286)
T PRK13646 78 KYIRPVRKRIGMVFQFPESQLFE-DTVEREIIF-GPKN------FKMNLDEVKNY---AHRLLMDLGFSRDVMSQSPFQM 146 (286)
T ss_pred chHHHHHhheEEEecChHhccch-hhHHHHHHh-hHHH------cCCCHHHHHHH---HHHHHHHcCCChhhhhCCcccC
Confidence 34677899999986 4555 477665542 2111 1123322 223 33444443442 567888999
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
|+|||||+.||+||+.+|++|+|||||+|||+.++..+.++|+++++ +|+|||++||+++ .+.++||++++|++|+++
T Consensus 147 SgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~ 225 (286)
T PRK13646 147 SGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIV 225 (286)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986 4999999999976 467899999999999999
Q ss_pred EEcChhHHHH
Q psy13765 255 YQGATDQLVN 264 (606)
Q Consensus 255 ~~G~~~~~~~ 264 (606)
+.|+++++.+
T Consensus 226 ~~g~~~~~~~ 235 (286)
T PRK13646 226 SQTSPKELFK 235 (286)
T ss_pred EECCHHHHHh
Confidence 9999988653
No 83
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2.3e-40 Score=336.09 Aligned_cols=217 Identities=26% Similarity=0.373 Sum_probs=173.2
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CccEEEECCccCC--
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSRN-- 102 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~----~~G~I~~~G~~~~-- 102 (606)
++++||+++|+ ++.+++|+|+++++||+++|+||||||||||+++|+|+.++. .+|+|.++|++..
T Consensus 2 l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~ 73 (247)
T TIGR00972 2 IEIENLNLFYG--------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDK 73 (247)
T ss_pred EEEEEEEEEEC--------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccc
Confidence 68999999873 346999999999999999999999999999999999998752 1899999998653
Q ss_pred ---hhhhcccEEEEccCCCCCCCCcHHHHHHH-cCCccccCCccccCChHH-HHHHHHHHHHhcCC-cc-cccCCCCCCC
Q psy13765 103 ---INAFRRVSCYIQQDDRLQPLLTIENVMSL-LGLDESQNTRSSQLSGGQ-KKRLSIALELINNP-RV-MFLDEPTTSN 175 (606)
Q Consensus 103 ---~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~-~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~-~~-~~~de~~~~~ 175 (606)
....++.++|++|++.+++ .|+.+.+.. ..... ..+..+ ++++.-+.+.+.-. .+ -.+|.+...+
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~-------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 145 (247)
T TIGR00972 74 KIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG-------IKDKKELDEIVEESLKKAALWDEVKDRLHDSALGL 145 (247)
T ss_pred ccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC-------CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccC
Confidence 2345678999999999988 888665542 11100 012122 23333222222211 11 2468889999
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|++++
T Consensus 146 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~ 223 (247)
T TIGR00972 146 SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYDGELVE 223 (247)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999977 489999999987 5778999999999999999
Q ss_pred EcChhHHH
Q psy13765 256 QGATDQLV 263 (606)
Q Consensus 256 ~G~~~~~~ 263 (606)
.|+++++.
T Consensus 224 ~~~~~~~~ 231 (247)
T TIGR00972 224 YGPTEQIF 231 (247)
T ss_pred eCCHHHHH
Confidence 99988764
No 84
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.4e-40 Score=349.22 Aligned_cols=229 Identities=21% Similarity=0.318 Sum_probs=182.0
Q ss_pred eEEEEEeeEEEEecCCc-----ccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC
Q psy13765 27 IEIKFKDLTYTVSTGLG-----FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR 101 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~-----~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~ 101 (606)
..|+++||+++|..+.+ ...+.+.+++|||++|++||+++|+|+||||||||+++|+|+.++ .+|+|.++|++.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p-~~G~I~~~G~~i 85 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA-TDGEVAWLGKDL 85 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCcEEEECCEEC
Confidence 46999999999853211 011235799999999999999999999999999999999999876 599999999865
Q ss_pred Ch------hhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCC
Q psy13765 102 NI------NAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEP 171 (606)
Q Consensus 102 ~~------~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~ 171 (606)
.. ..+++.++||+|++ .++|.+|+.+.+... +.... ..++..+.+ ..+.+++..-.+ -++|..
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~-l~~~~----~~~~~~~~~--~~~~~~l~~vgl~~~~~~~~ 158 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEP-LRTYH----PKLSRQEVK--DRVKAMMLKVGLLPNLINRY 158 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHH-HHHhc----cCCCHHHHH--HHHHHHHHHcCCChHHhcCC
Confidence 31 23567899999998 688899987765431 11000 113333322 122344433333 257888
Q ss_pred CCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 172 ~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
...||||||||+.||+||+.+|++|++||||+|||..++.+++++|++++++ |.|+|++|||+. .+.++||++++|.+
T Consensus 159 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~ 237 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL 237 (331)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999999999999875 999999999986 57789999999999
Q ss_pred CcEEEEcChhHHHH
Q psy13765 251 GQCLYQGATDQLVN 264 (606)
Q Consensus 251 G~~~~~G~~~~~~~ 264 (606)
|++++.|+++++.+
T Consensus 238 G~ive~g~~~~i~~ 251 (331)
T PRK15079 238 GHAVELGTYDEVYH 251 (331)
T ss_pred CEEEEEcCHHHHHc
Confidence 99999999988753
No 85
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-40 Score=338.51 Aligned_cols=207 Identities=25% Similarity=0.365 Sum_probs=170.5
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~ 106 (606)
..|+++||+++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+. ..+
T Consensus 11 ~~l~i~~l~~~~~--------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p-~~G~i~~~g~~~--~~~ 79 (257)
T PRK11247 11 TPLLLNAVSKRYG--------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP-SAGELLAGTAPL--AEA 79 (257)
T ss_pred CcEEEEEEEEEEC--------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEH--HHh
Confidence 3589999999873 35799999999999999999999999999999999999876 599999999754 345
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~I 185 (606)
++.++|++|++.+++.+|+.+.+... +.. ..++++. +++..-.+- .++.+...+|||||||+.|
T Consensus 80 ~~~i~~v~q~~~l~~~~tv~enl~~~-~~~-----------~~~~~~~---~~l~~~gl~~~~~~~~~~LSgGqkqrl~l 144 (257)
T PRK11247 80 REDTRLMFQDARLLPWKKVIDNVGLG-LKG-----------QWRDAAL---QALAAVGLADRANEWPAALSGGQKQRVAL 144 (257)
T ss_pred hCceEEEecCccCCCCCcHHHHHHhc-ccc-----------hHHHHHH---HHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 67899999999999988987766531 110 0122322 222222221 4577888899999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
|+||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|++. .+.++||++++|++|++++.|+.+
T Consensus 145 araL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 145 ARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999999999999999865 4899999999976 467899999999999999988754
No 86
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.6e-40 Score=329.82 Aligned_cols=205 Identities=25% Similarity=0.385 Sum_probs=164.7
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----- 103 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----- 103 (606)
|+++|++++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...
T Consensus 2 l~~~~l~~~~~-------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 2 IEFHNVSKAYP-------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-SRGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred EEEEeeeEEeC-------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcccCCHHH
Confidence 78999999873 235699999999999999999999999999999999999876 59999999986531
Q ss_pred -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765 104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQK 180 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~ 180 (606)
..+++.++|++|++.+++.+|+.+.+.... . . .+....+ ++++. +++..-.+- ..+.++..+|+|||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~-~-~-----~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~ 143 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPL-E-V-----RGKKEREIQRRVG---AALRQVGLEHKADAFPEQLSGGEQ 143 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHH-H-H-----cCCCHHHHHHHHH---HHHHHcCChhhhhCChhhCCHHHH
Confidence 135678999999999999899877654320 0 0 0111111 23332 222222221 45777889999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus 144 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 144 QRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999999999999999878999999999986 5778999999999885
No 87
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-40 Score=342.92 Aligned_cols=205 Identities=18% Similarity=0.294 Sum_probs=165.2
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hh----hcccEEEEccCCCC
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NA----FRRVSCYIQQDDRL 119 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~----~~~~~~yv~Q~~~l 119 (606)
+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... .. .++.++|++|++.+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p-~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP-TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 456799999999999999999999999999999999999876 59999999986431 11 23579999999999
Q ss_pred CCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHHHhhhcCCcEEE
Q psy13765 120 QPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIALELINNPRVMF 197 (606)
Q Consensus 120 ~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA~aL~~~P~lll 197 (606)
++.+|+.+.+... +. . .....-+ ++++ .+++..-.+- .++.+...+|+|||||+.||+||+.+|++|+
T Consensus 114 ~~~~tv~e~l~~~-~~-~-----~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 114 LPHRTVLENVAFG-LE-V-----QGVPRAEREERA---AEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred CCCCcHHHHHHHH-HH-h-----cCCCHHHHHHHH---HHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999997766431 10 0 0011111 2222 2233322332 4678888999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 198 LDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 198 LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||++++|++|++++.|+++++.
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999764 899999999976 577899999999999999999988764
No 88
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-40 Score=341.13 Aligned_cols=228 Identities=31% Similarity=0.462 Sum_probs=180.5
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----- 102 (606)
.|+++|++++|+ +++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..
T Consensus 5 ~l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p-~~G~i~i~g~~~~~~~~~ 76 (283)
T PRK13636 5 ILKVEELNYNYS-------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP-SSGRILFDGKPIDYSRKG 76 (283)
T ss_pred eEEEEeEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CccEEEECCEECCCCcch
Confidence 589999999973 235699999999999999999999999999999999999876 5999999998752
Q ss_pred hhhhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchh
Q psy13765 103 INAFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQ 179 (606)
Q Consensus 103 ~~~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~ 179 (606)
...+++.+||++|++. .....|+.+.+.. +... .+++..+ ++++.-+.+. -++- ..|.+...+|+||
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~-~~~~------~~~~~~~~~~~~~~~l~~---~gL~~~~~~~~~~LS~G~ 146 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSF-GAVN------LKLPEDEVRKRVDNALKR---TGIEHLKDKPTHCLSFGQ 146 (283)
T ss_pred HHHHHhhEEEEecCcchhhccccHHHHHHh-HHHH------cCCCHHHHHHHHHHHHHH---CCChhhhhCCcccCCHHH
Confidence 2346678999999973 2334688665543 1110 1233333 2343333232 2332 5688999999999
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
|||+.||+||+.+|++|+|||||+|||+.++..+.++|++++++ |+|||+++|+++ .+.++|||+++|++|++++.|+
T Consensus 147 ~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~ 225 (283)
T PRK13636 147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGN 225 (283)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999875 899999999987 4667999999999999999999
Q ss_pred hhHHHH---HHHhCCCCCC
Q psy13765 259 TDQLVN---YLSSVNLPCP 274 (606)
Q Consensus 259 ~~~~~~---~f~~~g~~~~ 274 (606)
++++.+ .+...+.++|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~ 244 (283)
T PRK13636 226 PKEVFAEKEMLRKVNLRLP 244 (283)
T ss_pred HHHHhcCHHHHHHcCCCCC
Confidence 988754 2334455443
No 89
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4e-40 Score=332.11 Aligned_cols=216 Identities=23% Similarity=0.358 Sum_probs=172.7
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--hhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--NAF 106 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--~~~ 106 (606)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... ...
T Consensus 2 l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~i~~~~~~~ 72 (236)
T TIGR03864 2 LEVAGLSFAYG--------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA-QEGQISVAGHDLRRAPRAA 72 (236)
T ss_pred EEEEeeEEEEC--------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEcccCChhh
Confidence 67899999873 35699999999999999999999999999999999999876 59999999976431 223
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~I 185 (606)
++.++|++|++.+++.+|+.+.+...... .+.+.-+ ....+.+++..-.+- .+|.+...+|+|||||+.|
T Consensus 73 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~l 143 (236)
T TIGR03864 73 LARLGVVFQQPTLDLDLSVRQNLRYHAAL-------HGLSRAE--ARERIAALLARLGLAERADDKVRELNGGHRRRVEI 143 (236)
T ss_pred hhhEEEeCCCCCCcccCcHHHHHHHHHHh-------cCCCHHH--HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHH
Confidence 45799999999988889987665432110 0111111 111223333332332 4678888999999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
|+||+.+|++++|||||+|||+.++..+.+.|+++++ +|.|||+++|+++. +. .+|++++|++|++++.|+++++.+
T Consensus 144 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 144 ARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999985 58999999999874 54 599999999999999999887654
No 90
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-40 Score=347.55 Aligned_cols=226 Identities=22% Similarity=0.347 Sum_probs=181.1
Q ss_pred EEEEEeeEEEEecCCcc--cccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--
Q psy13765 28 EIKFKDLTYTVSTGLGF--KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~--~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-- 103 (606)
.|+++||++.|+.+.+. ..+.+.+|+|||++|++||+++|+|+||||||||+++|+|+.++ .+|+|.++|++...
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p-~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP-TGGELYYQGQDLLKAD 83 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCcEEEECCEEcCcCC
Confidence 58999999998532110 01235799999999999999999999999999999999999876 58999999986531
Q ss_pred ----hhhcccEEEEccCC--CCCCCCcHHHHHHHc-CCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCC
Q psy13765 104 ----NAFRRVSCYIQQDD--RLQPLLTIENVMSLL-GLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTS 174 (606)
Q Consensus 104 ----~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~ 174 (606)
..+++.++||+|++ .+.|.+|+.+.+... ... ..++..++ -..+.+++..-.+ -.+|.....
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~-------~~~~~~~~--~~~~~~~l~~~gL~~~~~~~~p~~ 154 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN-------TSLSAAER--REKALAMMAKVGLRPEHYDRYPHM 154 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc-------cCCCHHHH--HHHHHHHHHHCCCChHHhcCCCcc
Confidence 24567899999998 588999997766431 111 01222222 1223344443333 256888999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
||||||||+.||+||+.+|++|++||||+|||..++.+++++|++++++ |.|+|++|||+. .+.++||++++|.+|++
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRC 233 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 999999999976 56789999999999999
Q ss_pred EEEcChhHHHH
Q psy13765 254 LYQGATDQLVN 264 (606)
Q Consensus 254 ~~~G~~~~~~~ 264 (606)
++.|+++++.+
T Consensus 234 ve~g~~~~~~~ 244 (327)
T PRK11308 234 VEKGTKEQIFN 244 (327)
T ss_pred EEECCHHHHhc
Confidence 99999988754
No 91
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.7e-40 Score=329.50 Aligned_cols=206 Identities=24% Similarity=0.365 Sum_probs=164.9
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----- 103 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----- 103 (606)
++++|++++|+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~ 72 (214)
T cd03292 1 IEFINVTKTYP-------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP-TSGTIRVNGQDVSDLRGRA 72 (214)
T ss_pred CEEEEEEEEeC-------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcccCCHHH
Confidence 46899999873 125699999999999999999999999999999999999876 59999999986431
Q ss_pred -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765 104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQK 180 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~ 180 (606)
...++.++|++|++.+++.+|+.+.+... ... ...+.-+ ++++. +++..-.+- .+|.+...+|+|||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~-~~~------~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~ 142 (214)
T cd03292 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFA-LEV------TGVPPREIRKRVP---AALELVGLSHKHRALPAELSGGEQ 142 (214)
T ss_pred HHHHHHheEEEecCchhccCCcHHHHHHHH-HHH------cCCCHHHHHHHHH---HHHHHcCCHHHhhCChhhcCHHHH
Confidence 23567899999999999999987665432 100 0011111 23333 222222221 45778889999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
||+.||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|++
T Consensus 143 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 143 QRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999999877999999999976 56678999999999874
No 92
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-40 Score=339.10 Aligned_cols=216 Identities=29% Similarity=0.457 Sum_probs=171.2
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----h
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----I 103 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----~ 103 (606)
|+++||+++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.. .
T Consensus 2 l~~~~l~~~~~--------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~ 72 (271)
T PRK13638 2 LATSDLWFRYQ--------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP-QKGAVLWQGKPLDYSKRGL 72 (271)
T ss_pred eEEEEEEEEcC--------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CccEEEECCEEcccccCCH
Confidence 78999999872 35699999999999999999999999999999999999876 5999999998752 1
Q ss_pred hhhcccEEEEccCCCC-CCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhh
Q psy13765 104 NAFRRVSCYIQQDDRL-QPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l-~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~k 181 (606)
...++.++||+|++.. ....|+.+.+... +.. .+.+..+ ++++.-+.+.+.-. -..|.+...+||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~-~~~------~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~q 143 (271)
T PRK13638 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFS-LRN------LGVPEAEITRRVDEALTLVDAQ--HFRHQPIQCLSHGQKK 143 (271)
T ss_pred HHHHhheEEEeeChhhccccccHHHHHHHH-HHH------cCCCHHHHHHHHHHHHHHcCCH--hHhcCCchhCCHHHHH
Confidence 2456789999999753 3344665544321 110 0111111 23333233332211 1457888999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~ 261 (606)
|+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.++||++++|++|++++.|++++
T Consensus 144 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (271)
T PRK13638 144 RVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGE 222 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999999877999999999986 5678999999999999999999887
Q ss_pred HH
Q psy13765 262 LV 263 (606)
Q Consensus 262 ~~ 263 (606)
+.
T Consensus 223 ~~ 224 (271)
T PRK13638 223 VF 224 (271)
T ss_pred Hh
Confidence 64
No 93
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-40 Score=336.59 Aligned_cols=222 Identities=22% Similarity=0.378 Sum_probs=178.1
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~ 104 (606)
.++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.. ..
T Consensus 2 ~l~~~~l~~~~~--------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~ 72 (255)
T PRK11231 2 TLRTENLTVGYG--------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-QSGTVFLGDKPISMLSSR 72 (255)
T ss_pred EEEEEeEEEEEC--------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CCcEEEECCEEhHHCCHH
Confidence 588999999872 35799999999999999999999999999999999999776 5999999997642 23
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~ 184 (606)
.+++.++|++|++.+++.+|+.+.+... .....+ ..+......++++.-+.+.+.-. -..|.+...+|+|||||+.
T Consensus 73 ~~~~~i~~~~q~~~~~~~~tv~~~i~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 73 QLARRLALLPQHHLTPEGITVRELVAYG-RSPWLS-LWGRLSAEDNARVNQAMEQTRIN--HLADRRLTDLSGGQRQRAF 148 (255)
T ss_pred HHhhheEEecccCCCCCCccHHHHHHhc-cchhhh-hccCCCHHHHHHHHHHHHHcCCH--HHHcCCcccCCHHHHHHHH
Confidence 4567799999999988888987766531 111000 00111222234443333332211 1468889999999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|+++..|+++++.
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 999999999999999999999999999999999999877999999999987 577899999999999999999987753
No 94
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.6e-40 Score=329.34 Aligned_cols=206 Identities=27% Similarity=0.432 Sum_probs=166.1
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----h
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----I 103 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----~ 103 (606)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.. .
T Consensus 1 l~~~~l~~~~~--------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03262 1 IEIKNLHKSFG--------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP-DSGTIIIDGLKLTDDKKNI 71 (213)
T ss_pred CEEEEEEEEEC--------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCccchhH
Confidence 46899999873 35699999999999999999999999999999999999876 5999999998652 2
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKK 181 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k 181 (606)
..+++.++|++|++.+++.+|+.+.+..... .. .+.+. ..++++ .+++..-.+- .++.+...+|+||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~-~~-----~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~G~~q 142 (213)
T cd03262 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPI-KV-----KGMSKAEAEERA---LELLEKVGLADKADAYPAQLSGGQQQ 142 (213)
T ss_pred HHHHhcceEEecccccCCCCcHHHHHHhHHH-Hh-----cCCCHHHHHHHH---HHHHHHcCCHhHhhhCccccCHHHHH
Confidence 3456789999999999998998776543211 00 01111 122233 2222222221 467888999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
|+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.++||++++|++|++
T Consensus 143 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 143 RVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999888999999999986 57789999999999974
No 95
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-40 Score=336.93 Aligned_cols=218 Identities=22% Similarity=0.383 Sum_probs=175.3
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~ 104 (606)
.|+++||+++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ..
T Consensus 2 ~l~~~~l~~~~~--------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p-~~G~i~~~g~~~~~~~~~ 72 (258)
T PRK13548 2 MLEARNLSVRLG--------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP-DSGEVRLNGRPLADWSPA 72 (258)
T ss_pred eEEEEeEEEEeC--------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEEcccCCHH
Confidence 478999999873 35699999999999999999999999999999999999876 5999999997643 23
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~ 184 (606)
..++.++|++|++.+++.+|+.+.+....... .. -....++++.-+.+.+.-. -..|.....||+|||||+.
T Consensus 73 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~----~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGe~qrv~ 144 (258)
T PRK13548 73 ELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH--GL----SRAEDDALVAAALAQVDLA--HLAGRDYPQLSGGEQQRVQ 144 (258)
T ss_pred HhhhheEEEccCCcCCCCCCHHHHHHhhhccc--CC----CcHHHHHHHHHHHHHcCCH--hHhcCCcccCCHHHHHHHH
Confidence 45577999999999888889877665421110 00 0011233333233332211 1467888999999999999
Q ss_pred HHHhhh------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 185 IALELI------NNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS-QQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 185 IA~aL~------~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
||+||+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. .+.++||++++|++|++++.|
T Consensus 145 la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 223 (258)
T PRK13548 145 LARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADG 223 (258)
T ss_pred HHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEeeC
Confidence 999999 5999999999999999999999999999998 57999999999976 577899999999999999999
Q ss_pred ChhHHH
Q psy13765 258 ATDQLV 263 (606)
Q Consensus 258 ~~~~~~ 263 (606)
+++++.
T Consensus 224 ~~~~~~ 229 (258)
T PRK13548 224 TPAEVL 229 (258)
T ss_pred CHHHHh
Confidence 987764
No 96
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.8e-40 Score=336.45 Aligned_cols=217 Identities=23% Similarity=0.337 Sum_probs=174.7
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----- 103 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----- 103 (606)
|+++||+++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...
T Consensus 1 i~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~ 71 (252)
T TIGR03005 1 VRFSDVTKRFG--------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI-DEGQIQVEGEQLYHMPGRN 71 (252)
T ss_pred CEEEEEEEEeC--------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccccccc
Confidence 47899999873 35699999999999999999999999999999999999876 59999999976421
Q ss_pred -----------hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCC
Q psy13765 104 -----------NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEP 171 (606)
Q Consensus 104 -----------~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~ 171 (606)
..+++.++|++|++.+++..|+.+.+....... . +...-+. -.-+.+++..-.+- ..|.+
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~---~---~~~~~~~--~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV---L---GMARAEA--EKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh---c---CCCHHHH--HHHHHHHHHHcCChhHhhcC
Confidence 234678999999999999899876654311100 0 1111111 11223333332332 56788
Q ss_pred CCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 172 ~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
...+|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. .+.+++|++++|++
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~ 222 (252)
T TIGR03005 144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK 222 (252)
T ss_pred hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 8899999999999999999999999999999999999999999999999875 899999999987 57789999999999
Q ss_pred CcEEEEcChhHHH
Q psy13765 251 GQCLYQGATDQLV 263 (606)
Q Consensus 251 G~~~~~G~~~~~~ 263 (606)
|++++.|+++++.
T Consensus 223 G~i~~~g~~~~~~ 235 (252)
T TIGR03005 223 GRIVEQGKPDEIF 235 (252)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
No 97
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-40 Score=337.07 Aligned_cols=223 Identities=23% Similarity=0.417 Sum_probs=178.6
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
..|+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+. +.
T Consensus 10 ~~l~i~~l~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~ 80 (265)
T PRK10575 10 TTFALRNVSFRVP--------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP-SEGEILLDAQPLESWSS 80 (265)
T ss_pred ceEEEeeEEEEEC--------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCCEEEECCEehhhCCH
Confidence 4699999999873 35799999999999999999999999999999999999876 599999999764 23
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl 183 (606)
..+++.++|++|++.+++.+|+.+.+.. +..... ...+....-.++++.-+.+.+.-. -.+|.+...+|||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv 156 (265)
T PRK10575 81 KAFARKVAYLPQQLPAAEGMTVRELVAI-GRYPWH-GALGRFGAADREKVEEAISLVGLK--PLAHRLVDSLSGGERQRA 156 (265)
T ss_pred HHHhhheEEeccCCCCCCCccHHHHHHh-Cccccc-ccccCCCHHHHHHHHHHHHHcCCH--HHhcCCcccCCHHHHHHH
Confidence 4556789999999888888999776653 211100 000011111234444333333221 146788899999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.+.||++++|++|+++..|+++++
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9999999999999999999999999999999999999875 899999999987 57789999999999999999998775
Q ss_pred H
Q psy13765 263 V 263 (606)
Q Consensus 263 ~ 263 (606)
.
T Consensus 236 ~ 236 (265)
T PRK10575 236 M 236 (265)
T ss_pred c
Confidence 3
No 98
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.1e-40 Score=352.51 Aligned_cols=207 Identities=22% Similarity=0.305 Sum_probs=168.7
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhhh----cccEEEEccCCCC
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INAF----RRVSCYIQQDDRL 119 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~~----~~~~~yv~Q~~~l 119 (606)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|+.++ .+|+|.++|++.. ...+ ++.++||+|++.+
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p-~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP-TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC-CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 456799999999999999999999999999999999999887 5999999998753 2333 6789999999999
Q ss_pred CCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEE
Q psy13765 120 QPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIALELINNPRVMFL 198 (606)
Q Consensus 120 ~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA~aL~~~P~lllL 198 (606)
+|.+||.+.+.. ++.. .+.+.-+ +-..+.+++...++- ..+++...|||||||||.|||||+.+|++|+|
T Consensus 83 ~~~~TV~eNi~~-~~~~------~~~~~~~--~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 83 FPHMTILQNTSL-GPEL------LGWPEQE--RKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCHHHHHHH-HHHH------cCCCHHH--HHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999665532 1110 1122222 222233333333332 56788888999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 199 DEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 199 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
||||+|||+.++..+.+.+++++++ |+|||++|||+. ++.++||++++|++|+++..|+++++..
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 9999999999999999999999765 899999999987 4779999999999999999999998754
No 99
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-40 Score=324.16 Aligned_cols=195 Identities=26% Similarity=0.489 Sum_probs=157.6
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCccEEEECCccCCh--
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTNGHSRNI-- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~~~G~I~~~G~~~~~-- 103 (606)
.+.|+||+|+|+.+ ++++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ..+|+|.++|.+...
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~ 78 (202)
T cd03233 3 TLSWRNISFTTGKG----RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78 (202)
T ss_pred eEEEEccEEEeccC----CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch
Confidence 57899999999753 2456899999999999999999999999999999999999872 369999999986532
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl 183 (606)
...++.++|++|++.+++.+|+.+.+.... ....++.+..||||||||++||
T Consensus 79 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~-~~~~~~~~~~LS~Ge~qrl~la--------------------------- 130 (202)
T cd03233 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFAL-RCKGNEFVRGISGGERKRVSIA--------------------------- 130 (202)
T ss_pred hhhcceEEEEecccccCCCCcHHHHHhhhh-hhccccchhhCCHHHHHHHHHH---------------------------
Confidence 345678999999999999999977665321 1013445555666666666655
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
+||+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.||++++|++|++++.|
T Consensus 131 ---ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 131 ---EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred ---HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 4555559999999999999999999999999999875 6787777776555678899999999999998765
No 100
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-40 Score=341.67 Aligned_cols=220 Identities=22% Similarity=0.382 Sum_probs=176.2
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----- 102 (606)
.|+++||++.|..+. ...+.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++..
T Consensus 2 ~i~~~~l~~~~~~~~---~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~ 77 (287)
T PRK13641 2 SIKFENVDYIYSPGT---PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP-SSGTITIAGYHITPETGN 77 (287)
T ss_pred EEEEEEEEEEcCCCC---CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEECcccccc
Confidence 588999999974210 0125699999999999999999999999999999999999877 5999999998652
Q ss_pred --hhhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc--ccCCCCCCC
Q psy13765 103 --INAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM--FLDEPTTSN 175 (606)
Q Consensus 103 --~~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~--~~de~~~~~ 175 (606)
....++.++|++|++ .++ .+|+.+.+.. +... ......+ ++|+ .+++..-.+- ..+.+...|
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~-~~~~------~~~~~~~~~~~~---~~~l~~~gL~~~~~~~~~~~L 146 (287)
T PRK13641 78 KNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEF-GPKN------FGFSEDEAKEKA---LKWLKKVGLSEDLISKSPFEL 146 (287)
T ss_pred chHHHHHhceEEEEeChhhhhc-cchHHHHHHH-HHHH------cCCCHHHHHHHH---HHHHHHcCCChhHhhCCcccC
Confidence 134567899999997 344 4688766642 1110 0112222 3333 3444444442 568899999
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ .+.++||++++|++|++++
T Consensus 147 SgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~ 225 (287)
T PRK13641 147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIK 225 (287)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999878999999999976 5778999999999999999
Q ss_pred EcChhHHH
Q psy13765 256 QGATDQLV 263 (606)
Q Consensus 256 ~G~~~~~~ 263 (606)
.|+++++.
T Consensus 226 ~g~~~~~~ 233 (287)
T PRK13641 226 HASPKEIF 233 (287)
T ss_pred eCCHHHHh
Confidence 99988764
No 101
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.1e-40 Score=330.59 Aligned_cols=216 Identities=24% Similarity=0.371 Sum_probs=169.3
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----- 103 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----- 103 (606)
|+++||+++|+.. .....+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...
T Consensus 2 l~~~~v~~~~~~~----~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~ 76 (228)
T cd03257 2 LEVKNLSVSFPTG----GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP-TSGSIIFDGKDLLKLSRRL 76 (228)
T ss_pred eEEEeeeEeccCC----CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEccccchhh
Confidence 6789999987321 0113699999999999999999999999999999999999876 59999999986532
Q ss_pred -hhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCch
Q psy13765 104 -NAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPND 178 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g 178 (606)
..+++.++|++|++ .+++.+|+.+.+.. ++..... ....-+.+++ +.+++..-.+ -.++.+...+|+|
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~-~~~~~~~----~~~~~~~~~~--~~~~l~~~~l~~~~~~~~~~~LS~G 149 (228)
T cd03257 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAE-PLRIHGK----LSKKEARKEA--VLLLLVGVGLPEEVLNRYPHELSGG 149 (228)
T ss_pred HHHhhccEEEEecCchhhcCCcCCHHHHHHH-HHHhccC----CcHHHHHHHH--HHHHHHHCCCChhHhhCCchhcCHH
Confidence 24567899999998 56778898776543 1111000 0011111221 1233333334 2568899999999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.+.||++++|++|+++..|
T Consensus 150 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 150 QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999999999876 899999999986 566799999999999998654
No 102
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3e-40 Score=331.50 Aligned_cols=213 Identities=22% Similarity=0.375 Sum_probs=172.4
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h-
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N- 104 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~- 104 (606)
|+++||++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... .
T Consensus 1 l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 1 LEVSNLNVYYG--------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV-KSGSIRLDGEDITKLPPHE 71 (230)
T ss_pred CEEEeEEEEeC--------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEECCCCCHHH
Confidence 46899999873 35799999999999999999999999999999999999876 59999999976431 1
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHH
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl 183 (606)
..++.++|++|++.+++.+|+.+.+... .... +. + ++++..-+..+... + -..|++...+|+|||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~-~~~~-~~-----~--~~~~~~~~l~~~~~--l~~~~~~~~~~LS~G~~qrv 140 (230)
T TIGR03410 72 RARAGIAYVPQGREIFPRLTVEENLLTG-LAAL-PR-----R--SRKIPDEIYELFPV--LKEMLGRRGGDLSGGQQQQL 140 (230)
T ss_pred HHHhCeEEeccCCcccCCCcHHHHHHHH-HHhc-Cc-----c--hHHHHHHHHHHHHh--HHHHhhCChhhCCHHHHHHH
Confidence 2356799999999999999997766432 1110 00 1 11221111222110 0 146889999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
.||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|+++..|+++++
T Consensus 141 ~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 141 AIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999999999999999875 899999999976 57778999999999999999998876
No 103
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-40 Score=332.55 Aligned_cols=213 Identities=25% Similarity=0.379 Sum_probs=173.1
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~ 103 (606)
+.++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. .
T Consensus 2 ~~l~~~~l~~~~~--------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~ 72 (241)
T PRK14250 2 NEIEFKEVSYSSF--------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP-TEGSILIDGVDIKTIDV 72 (241)
T ss_pred ceEEEEeEEEEeC--------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEhhhcCh
Confidence 3589999999872 35699999999999999999999999999999999999876 5999999997643 2
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCchhhh
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPNDQKK 181 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g~~k 181 (606)
...++.++|++|++.+++ .|+.+.+..... .. +-+++++ .+++..-.+ -..+.+...+|+||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~---~~-------~~~~~~~---~~~l~~~~l~~~~~~~~~~~LS~G~~q 138 (241)
T PRK14250 73 IDLRRKIGMVFQQPHLFE-GTVKDNIEYGPM---LK-------GEKNVDV---EYYLSIVGLNKEYATRDVKNLSGGEAQ 138 (241)
T ss_pred HHhhhcEEEEecCchhch-hhHHHHHhcchh---hc-------CcHHHHH---HHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 345678999999998887 577665432110 00 0112232 222322233 1457788899999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
|+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||++++|++|+++..|+++
T Consensus 139 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 217 (241)
T PRK14250 139 RVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTY 217 (241)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999999999999999874 999999999987 577899999999999999999988
Q ss_pred HHH
Q psy13765 261 QLV 263 (606)
Q Consensus 261 ~~~ 263 (606)
++.
T Consensus 218 ~~~ 220 (241)
T PRK14250 218 DFF 220 (241)
T ss_pred HHh
Confidence 764
No 104
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=5.5e-40 Score=328.98 Aligned_cols=220 Identities=32% Similarity=0.552 Sum_probs=173.6
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCccEEEECCccCChh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS---NGVTGQILTNGHSRNIN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~---~~~~G~I~~~G~~~~~~ 104 (606)
.+.++|++++++.. +..+++++|+|+++++||+++|+||||||||||+|+|+|+.+ + .+|+|.++|++....
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~-~~G~i~~~g~~~~~~ 77 (226)
T cd03234 3 VLPWWDVGLKAKNW----NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT-TSGQILFNGQPRKPD 77 (226)
T ss_pred cceeecceeeeecC----ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCC-CceEEEECCEECChH
Confidence 36799999998531 114689999999999999999999999999999999999987 4 599999999876555
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHH
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl 183 (606)
..++.++|++|++.+++.+|+.+.+........... ...--.++++.- .++..-.+ .+.++....+|+|||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~---~~~~~~~~~~~~--~~l~~~~l~~~~~~~~~~LS~G~~qrl 152 (226)
T cd03234 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRK---SSDAIRKKRVED--VLLRDLALTRIGGNLVKGISGGERRRV 152 (226)
T ss_pred HhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccc---cchHHHHHHHHH--HHHHhhcchhhhcccccCcCHHHHHHH
Confidence 667889999999999999999776653211000000 000011112211 02222122 245778889999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++..++.+.||++++|++|++++.|
T Consensus 153 ~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 153 SIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998779999999999854678999999999999998765
No 105
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-40 Score=320.56 Aligned_cols=218 Identities=22% Similarity=0.400 Sum_probs=179.6
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---- 103 (606)
.++++||+..| ++.++|+|||+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|+++..
T Consensus 3 mL~v~~l~~~Y--------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~-~~G~I~~~G~dit~~p~~ 73 (237)
T COG0410 3 MLEVENLSAGY--------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP-RSGRIIFDGEDITGLPPH 73 (237)
T ss_pred ceeEEeEeecc--------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeeEEECCeecCCCCHH
Confidence 58899999886 567899999999999999999999999999999999999876 48999999987642
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhH
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKR 182 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~kr 182 (606)
+..|+.++||||...+||.+||+|.+.. |.....++ .++++. +....-.-|.+- -.+.+.+.|||||||.
T Consensus 74 ~r~r~Gi~~VPegR~iF~~LTVeENL~~-g~~~~~~~------~~~~~~--~e~v~~lFP~Lker~~~~aG~LSGGEQQM 144 (237)
T COG0410 74 ERARLGIAYVPEGRRIFPRLTVEENLLL-GAYARRDK------EAQERD--LEEVYELFPRLKERRNQRAGTLSGGEQQM 144 (237)
T ss_pred HHHhCCeEeCcccccchhhCcHHHHHhh-hhhccccc------cccccc--HHHHHHHChhHHHHhcCcccCCChHHHHH
Confidence 4457789999999999999999887764 22111110 011111 223333334443 5677888888888888
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~ 261 (606)
|+|||||+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||+++.++.. ...+++||.++|.+|++++.|+.++
T Consensus 145 LAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~e 223 (237)
T COG0410 145 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSGTAAE 223 (237)
T ss_pred HHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEecCHHH
Confidence 88999999999999999999999999999999999999976 889999999876 4679999999999999999999998
Q ss_pred HHH
Q psy13765 262 LVN 264 (606)
Q Consensus 262 ~~~ 264 (606)
+.+
T Consensus 224 L~~ 226 (237)
T COG0410 224 LLA 226 (237)
T ss_pred Hhc
Confidence 754
No 106
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-40 Score=338.16 Aligned_cols=221 Identities=22% Similarity=0.351 Sum_probs=174.0
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---- 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---- 102 (606)
+.|+++||+++|+.+. ...+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..
T Consensus 1 ~~l~~~~l~~~~~~~~---~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~i~~~~~ 76 (280)
T PRK13649 1 MGINLQNVSYTYQAGT---PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP-TQGSVRVDDTLITSTSK 76 (280)
T ss_pred CeEEEEEEEEEcCCCC---ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccccc
Confidence 3588999999974210 0124699999999999999999999999999999999999876 5999999998643
Q ss_pred ---hhhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc--cccCCCCCC
Q psy13765 103 ---INAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV--MFLDEPTTS 174 (606)
Q Consensus 103 ---~~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~--~~~de~~~~ 174 (606)
...+++.++|++|++ .+++ .|+.+.+.. +... .+.+.-+ ++++ .+++..-.+ ..+|.+...
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~-~~~~------~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~~ 145 (280)
T PRK13649 77 NKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAF-GPQN------FGVSQEEAEALA---REKLALVGISESLFEKNPFE 145 (280)
T ss_pred ccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHH-HHHH------cCCCHHHHHHHH---HHHHHHcCCChhhhhCCccc
Confidence 134567899999997 4555 587665542 1100 0111111 2222 233332233 146888999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.++||++++|++|+++
T Consensus 146 LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~ 224 (280)
T PRK13649 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLV 224 (280)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999877999999999986 577899999999999999
Q ss_pred EEcChhHHH
Q psy13765 255 YQGATDQLV 263 (606)
Q Consensus 255 ~~G~~~~~~ 263 (606)
..|+++++.
T Consensus 225 ~~g~~~~~~ 233 (280)
T PRK13649 225 LSGKPKDIF 233 (280)
T ss_pred EeCCHHHHh
Confidence 999988764
No 107
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=4.5e-40 Score=328.87 Aligned_cols=209 Identities=27% Similarity=0.432 Sum_probs=167.9
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~ 108 (606)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..... ++
T Consensus 1 l~l~~v~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~~~~~-~~ 70 (223)
T TIGR03740 1 LETKNLSKRFG--------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP-TSGEIIFDGHPWTRKD-LH 70 (223)
T ss_pred CEEEeEEEEEC--------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEeccccc-cc
Confidence 46899999863 35699999999999999999999999999999999999876 5999999998654322 35
Q ss_pred cEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHHH
Q psy13765 109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIAL 187 (606)
Q Consensus 109 ~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA~ 187 (606)
.++|++|++.+++.+|+.+.+.... . ..+ .. .+++. +++..-.+- ..|.+...+|+|||||+.||+
T Consensus 71 ~~~~~~q~~~~~~~~t~~~~~~~~~-~-~~~-----~~---~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~~rv~lar 137 (223)
T TIGR03740 71 KIGSLIESPPLYENLTARENLKVHT-T-LLG-----LP---DSRID---EVLNIVDLTNTGKKKAKQFSLGMKQRLGIAI 137 (223)
T ss_pred cEEEEcCCCCccccCCHHHHHHHHH-H-HcC-----CC---HHHHH---HHHHHcCCcHHHhhhHhhCCHHHHHHHHHHH
Confidence 7999999999999889866554211 0 000 11 12222 222211121 356777888999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261 (606)
Q Consensus 188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~ 261 (606)
|++.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|++++
T Consensus 138 al~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 138 ALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999999999999999878999999999987 4778999999999999999998753
No 108
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-40 Score=336.65 Aligned_cols=222 Identities=23% Similarity=0.346 Sum_probs=179.0
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~ 103 (606)
..|+++||+++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.. .
T Consensus 6 ~~l~i~~l~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~ 76 (265)
T PRK10253 6 ARLRGEQLTLGYG--------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP-AHGHVWLDGEHIQHYAS 76 (265)
T ss_pred cEEEEEEEEEEEC--------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCcEEEECCEEhhhCCH
Confidence 4789999999973 35699999999999999999999999999999999999876 5999999998643 2
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhH
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKR 182 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~kr 182 (606)
...++.++|++|++.+++..|+.+.+....... .+ .........++++. +++..-++ -..|.+...+|+|||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~-~~-~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~Gq~qr 151 (265)
T PRK10253 77 KEVARRIGLLAQNATTPGDITVQELVARGRYPH-QP-LFTRWRKEDEEAVT---KAMQATGITHLADQSVDTLSGGQRQR 151 (265)
T ss_pred HHHhhheEEeeccCcCCCCCcHHHHHHhCcccc-cc-cccCCCHHHHHHHH---HHHHHcCCHHHhcCCcccCChHHHHH
Confidence 345667999999999998899977765421111 00 00001111223333 22222222 14688899999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~ 261 (606)
+.||+||+.+|++++|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.++||++++|++|++++.|++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999874 899999999987 5789999999999999999999887
Q ss_pred HH
Q psy13765 262 LV 263 (606)
Q Consensus 262 ~~ 263 (606)
+.
T Consensus 231 ~~ 232 (265)
T PRK10253 231 IV 232 (265)
T ss_pred Hh
Confidence 64
No 109
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-40 Score=334.29 Aligned_cols=223 Identities=18% Similarity=0.308 Sum_probs=176.9
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~ 104 (606)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... .
T Consensus 5 ~l~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~ 75 (255)
T PRK11300 5 LLSVSGLMMRFG--------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP-TGGTILLRGQHIEGLPGH 75 (255)
T ss_pred eEEEeeEEEEEC--------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-CcceEEECCEECCCCCHH
Confidence 589999999872 35799999999999999999999999999999999999876 59999999986532 2
Q ss_pred h-hcccEEEEccCCCCCCCCcHHHHHHHcCCc--------cccCCc-cccCChHHHHHHHHHHHHhcCCcc-cccCCCCC
Q psy13765 105 A-FRRVSCYIQQDDRLQPLLTIENVMSLLGLD--------ESQNTR-SSQLSGGQKKRLSIALELINNPRV-MFLDEPTT 173 (606)
Q Consensus 105 ~-~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~--------~~~~~~-~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~ 173 (606)
. .+..++|++|++.+++.+|+.+.+...... ...+.. ........++++ .+++..-.+ -.+|.+..
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~gl~~~~~~~~~ 152 (255)
T PRK11300 76 QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRA---ATWLERVGLLEHANRQAG 152 (255)
T ss_pred HHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHH---HHHHHhCChhhhhhCChh
Confidence 2 244589999999999999997766541100 000000 000001112233 233333233 25788999
Q ss_pred CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
.+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.++||++++|++|+
T Consensus 153 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 153 NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQGT 231 (255)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEECCe
Confidence 99999999999999999999999999999999999999999999999875 899999999976 5778999999999999
Q ss_pred EEEEcChhHHH
Q psy13765 253 CLYQGATDQLV 263 (606)
Q Consensus 253 ~~~~G~~~~~~ 263 (606)
+++.|+++++.
T Consensus 232 i~~~~~~~~~~ 242 (255)
T PRK11300 232 PLANGTPEEIR 242 (255)
T ss_pred EEecCCHHHHh
Confidence 99999988763
No 110
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-40 Score=338.57 Aligned_cols=215 Identities=20% Similarity=0.363 Sum_probs=172.3
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----hh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----IN 104 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----~~ 104 (606)
++++||+++|+ +.+.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ..
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~ 73 (274)
T PRK13644 2 IRLENVSYSYP-------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP-QKGKVLVSGIDTGDFSKLQ 73 (274)
T ss_pred EEEEEEEEEcC-------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEECCccccHH
Confidence 68999999873 234699999999999999999999999999999999999876 5999999998653 23
Q ss_pred hhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765 105 AFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKK 181 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k 181 (606)
..++.++|++|++. .+...|+.+.+.. +... ...+..+ ++++. +++..-.+- ..|.+...+|+||||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~-~~~~------~~~~~~~~~~~~~---~~l~~~gl~~~~~~~~~~LS~G~~q 143 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFVGRTVEEDLAF-GPEN------LCLPPIEIRKRVD---RALAEIGLEKYRHRSPKTLSGGQGQ 143 (274)
T ss_pred HHHhheEEEEEChhhhcccchHHHHHHh-hHHH------cCCCHHHHHHHHH---HHHHHCCCHHHhcCCcccCCHHHHH
Confidence 45678999999975 3555788665542 1110 1123222 22332 222222221 467888899999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~ 261 (606)
|+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++.. + ..||++++|++|++++.|++++
T Consensus 144 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 144 CVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADRIIVMDRGKIVLEGEPEN 221 (274)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999998789999999999874 5 5799999999999999999987
Q ss_pred HH
Q psy13765 262 LV 263 (606)
Q Consensus 262 ~~ 263 (606)
+.
T Consensus 222 ~~ 223 (274)
T PRK13644 222 VL 223 (274)
T ss_pred Hh
Confidence 64
No 111
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-40 Score=345.74 Aligned_cols=223 Identities=19% Similarity=0.286 Sum_probs=175.9
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCccEEEECCccCC--
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN---GVTGQILTNGHSRN-- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~---~~~G~I~~~G~~~~-- 102 (606)
.|+++||++.|+.+ .+...+|+||||+|++||+++|+||||||||||+++|+|+.++ ..+|+|.++|++..
T Consensus 3 ~L~v~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~ 78 (326)
T PRK11022 3 LLNVDKLSVHFGDE----SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRI 78 (326)
T ss_pred eEEEeCeEEEECCC----CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcC
Confidence 48999999998532 1225699999999999999999999999999999999999763 25899999998653
Q ss_pred -hhhh----cccEEEEccCC--CCCCCCcHHHHH-HHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc----cccCC
Q psy13765 103 -INAF----RRVSCYIQQDD--RLQPLLTIENVM-SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV----MFLDE 170 (606)
Q Consensus 103 -~~~~----~~~~~yv~Q~~--~l~~~ltv~~~l-~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~----~~~de 170 (606)
.+.+ ++.++||+|++ .+.|.+|+.+.+ +.+... .+.+..+.+ ..+.+++..-.+ -.+|.
T Consensus 79 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~-------~~~~~~~~~--~~~~~~L~~~gL~~~~~~l~~ 149 (326)
T PRK11022 79 SEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH-------QGGNKKTRR--QRAIDLLNQVGIPDPASRLDV 149 (326)
T ss_pred CHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh-------cCCCHHHHH--HHHHHHHHHCCCCChHHHHhC
Confidence 2222 24699999998 478889986443 222110 012332221 222333333232 24677
Q ss_pred CCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeec
Q psy13765 171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 171 ~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
....+||||||||.||+||+.+|++|++||||+|||+.++.+++++|+++++ .|.|+|++|||++ .+.+++|||++|.
T Consensus 150 ~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~ 228 (326)
T PRK11022 150 YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMY 228 (326)
T ss_pred CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 8889999999999999999999999999999999999999999999999987 4999999999987 4678999999999
Q ss_pred CCcEEEEcChhHHHH
Q psy13765 250 GGQCLYQGATDQLVN 264 (606)
Q Consensus 250 ~G~~~~~G~~~~~~~ 264 (606)
+|++++.|+++++.+
T Consensus 229 ~G~ive~g~~~~~~~ 243 (326)
T PRK11022 229 AGQVVETGKAHDIFR 243 (326)
T ss_pred CCEEEEECCHHHHhh
Confidence 999999999988753
No 112
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-40 Score=326.66 Aligned_cols=207 Identities=23% Similarity=0.425 Sum_probs=167.3
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--hhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--NAF 106 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--~~~ 106 (606)
|+++|++++++ ++.+++|+|+++++| +++|+||||||||||+++|+|+.++ .+|+|.++|.+... ..+
T Consensus 1 i~~~~~~~~~~--------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~ 70 (211)
T cd03264 1 LQLENLTKRYG--------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP-SSGTIRIDGQDVLKQPQKL 70 (211)
T ss_pred CEEEEEEEEEC--------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCCccccchHHH
Confidence 47899999872 346999999999999 9999999999999999999999876 59999999976432 345
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~ 184 (606)
++.++|++|++.+++.+|+.+.+...... .+.+..+ ++++. +++...++- .+|.+...+|+|||||+.
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 140 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWL-------KGIPSKEVKARVD---EVLELVNLGDRAKKKIGSLSGGMRRRVG 140 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHH-------hCCCHHHHHHHHH---HHHHHCCCHHHHhCchhhCCHHHHHHHH
Confidence 67899999999999999997665431100 0111122 23333 222222331 457888999999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+++|++++|++|++++.|
T Consensus 141 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 141 IAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999986 599999999986 466899999999999998765
No 113
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=8.3e-40 Score=345.20 Aligned_cols=226 Identities=23% Similarity=0.328 Sum_probs=179.3
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CccEEEECCccCC--
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG--VTGQILTNGHSRN-- 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~--~~G~I~~~G~~~~-- 102 (606)
..|+++||++.|..+ .+...+|+||||+|++||+++|+|+||||||||+++|+|+.++. .+|+|.++|++..
T Consensus 11 ~~L~i~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~ 86 (330)
T PRK09473 11 ALLDVKDLRVTFSTP----DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL 86 (330)
T ss_pred ceEEEeCeEEEEecC----CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcC
Confidence 369999999998532 13357999999999999999999999999999999999998763 4899999998653
Q ss_pred -hhh---hc-ccEEEEccCC--CCCCCCcHHHHHHH-cCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-cccCCCC
Q psy13765 103 -INA---FR-RVSCYIQQDD--RLQPLLTIENVMSL-LGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-MFLDEPT 172 (606)
Q Consensus 103 -~~~---~~-~~~~yv~Q~~--~l~~~ltv~~~l~~-~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-~~~de~~ 172 (606)
..+ +| +.++||+|++ .+.|.+|+.+.+.. +... ...+..+ ++|+.-..+.+.-++. -.++...
T Consensus 87 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~-------~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p 159 (330)
T PRK09473 87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLH-------KGMSKAEAFEESVRMLDAVKMPEARKRMKMYP 159 (330)
T ss_pred CHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHcCCCChHHHhcCCc
Confidence 222 23 4799999998 68899998664432 2111 0123222 2333323333333322 2356778
Q ss_pred CCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765 173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGG 251 (606)
Q Consensus 173 ~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G 251 (606)
..||||||||+.||+||+.+|++|++||||+|||+.++.+++++|++++++ |.|+|++|||+. .+.+++|++++|++|
T Consensus 160 ~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G 238 (330)
T PRK09473 160 HEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAG 238 (330)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999999875 999999999987 567899999999999
Q ss_pred cEEEEcChhHHHH
Q psy13765 252 QCLYQGATDQLVN 264 (606)
Q Consensus 252 ~~~~~G~~~~~~~ 264 (606)
++++.|+++++..
T Consensus 239 ~ive~g~~~~i~~ 251 (330)
T PRK09473 239 RTMEYGNARDVFY 251 (330)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998854
No 114
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-40 Score=315.65 Aligned_cols=202 Identities=27% Similarity=0.477 Sum_probs=162.8
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA 105 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~ 105 (606)
|+.+||+|++ .+|++|++||++++|||++||+||||||||||||.|+|...| .+|++.+||.+.+ ..+
T Consensus 2 i~a~nls~~~--------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p-~~G~v~~~g~~l~~~~~~~ 72 (259)
T COG4559 2 IRAENLSYSL--------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP-DSGEVTLNGVPLNSWPPEE 72 (259)
T ss_pred eeeeeeEEEe--------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC-CCCeEeeCCcChhhCCHHH
Confidence 7889999986 568899999999999999999999999999999999999877 4999999998653 456
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHH------------------------cCCccccCCccccCChHHHHHHHHHHHHhc
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSL------------------------LGLDESQNTRSSQLSGGQKKRLSIALELIN 161 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~------------------------~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~ 161 (606)
+.+.-+.+||+..+-.-.||.|+.+. .++.+...+....|||||||||.+||.|+.
T Consensus 73 lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQ 152 (259)
T COG4559 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQ 152 (259)
T ss_pred HHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHH
Confidence 67778999999988666777666543 333333334444455555555555555544
Q ss_pred CCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q psy13765 162 NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM 241 (606)
Q Consensus 162 ~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~ 241 (606)
-. +|+ .++++||||||||.||...+..++++.++++++|..|+++.||.+- ...+
T Consensus 153 l~------~~v------------------~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~Y 207 (259)
T COG4559 153 LW------PPV------------------PSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQY 207 (259)
T ss_pred cc------CCC------------------CCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHh
Confidence 31 111 2367999999999999999999999999999999999999999985 5689
Q ss_pred cceeeeecCCcEEEEcChhHHHH
Q psy13765 242 FDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 242 ~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
||||++|++||++..|+|+++..
T Consensus 208 aDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 208 ADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred hheeeeeeCCeEeecCCHHHhcC
Confidence 99999999999999999998763
No 115
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-40 Score=337.73 Aligned_cols=218 Identities=29% Similarity=0.450 Sum_probs=173.0
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~ 104 (606)
.++++||+++|+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++.. ..
T Consensus 3 ~l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~ 74 (277)
T PRK13652 3 LIETRDLCYSYS-------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP-TSGSVLIRGEPITKENIR 74 (277)
T ss_pred eEEEEEEEEEeC-------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCcCCHH
Confidence 478999999873 224599999999999999999999999999999999999876 5999999998653 23
Q ss_pred hhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-cccCCCCCCCCchhhh
Q psy13765 105 AFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-MFLDEPTTSNPNDQKK 181 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~k 181 (606)
..++.++||+|++. .+...|+.+.+.. +... .+....+ ++++.-+.+.+ ++ -.+|.....+|+||||
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~-~~~~------~~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~LS~Gq~q 144 (277)
T PRK13652 75 EVRKFVGLVFQNPDDQIFSPTVEQDIAF-GPIN------LGLDEETVAHRVSSALHML---GLEELRDRVPHHLSGGEKK 144 (277)
T ss_pred HHHhheEEEecCcccccccccHHHHHHh-HHHH------cCCCHHHHHHHHHHHHHHC---CChhHhcCCcccCCHHHHH
Confidence 55678999999974 2335688665542 1110 0122222 23333222222 22 1467778889999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
|+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.|||+++|++|++++.|+++
T Consensus 145 rl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~ 223 (277)
T PRK13652 145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVE 223 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999999875 899999999987 577899999999999999999998
Q ss_pred HHHH
Q psy13765 261 QLVN 264 (606)
Q Consensus 261 ~~~~ 264 (606)
++.+
T Consensus 224 ~~~~ 227 (277)
T PRK13652 224 EIFL 227 (277)
T ss_pred HHhc
Confidence 8753
No 116
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-40 Score=332.21 Aligned_cols=221 Identities=29% Similarity=0.382 Sum_probs=176.3
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC-
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~- 102 (606)
.++++||+++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ +.+|+|.++|.+..
T Consensus 3 ~l~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 74 (250)
T PRK14247 3 KIEIRDLKVSFG--------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74 (250)
T ss_pred eEEEEeeEEEEC--------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCc
Confidence 588999999873 35699999999999999999999999999999999999763 25899999998653
Q ss_pred --hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCc-c-cccCCCCCCCCc
Q psy13765 103 --INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPR-V-MFLDEPTTSNPN 177 (606)
Q Consensus 103 --~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~-~-~~~de~~~~~s~ 177 (606)
...+++.++|++|++.+++.+|+.+.+... .. ... . ..+..+ ++++.-+.+.+.-.+ + -.+|.+...+||
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~-~~-~~~-~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 149 (250)
T PRK14247 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALG-LK-LNR-L--VKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSG 149 (250)
T ss_pred CCHHHHhccEEEEeccCccCCCCcHHHHHHHH-HH-hcc-c--cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCH
Confidence 245567899999999988899997766531 11 000 0 011122 233332222222111 1 146889999999
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|+++|+++ .+.+.||++++|++|+++..|
T Consensus 150 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14247 150 GQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWG 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEEC
Confidence 999999999999999999999999999999999999999999965 899999999987 467899999999999999999
Q ss_pred ChhHHH
Q psy13765 258 ATDQLV 263 (606)
Q Consensus 258 ~~~~~~ 263 (606)
+++++.
T Consensus 228 ~~~~~~ 233 (250)
T PRK14247 228 PTREVF 233 (250)
T ss_pred CHHHHH
Confidence 998774
No 117
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-39 Score=336.47 Aligned_cols=226 Identities=27% Similarity=0.432 Sum_probs=177.6
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----h
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----I 103 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----~ 103 (606)
|+++||++.|+ +.+.+++|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.. .
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~ 73 (275)
T PRK13639 2 LETRDLKYSYP-------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP-TSGEVLIKGEPIKYDKKSL 73 (275)
T ss_pred EEEEEEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEECccccchH
Confidence 78999999873 234699999999999999999999999999999999999876 5999999998753 1
Q ss_pred hhhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765 104 NAFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKK 181 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k 181 (606)
...++.++|++|++. .+...|+.+.+.. +... ...+.-+.+ ..+.+++..-.+- ..|.+...+|+||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~e~i~~-~~~~------~~~~~~~~~--~~~~~~l~~~~L~~~~~~~~~~LS~Gq~q 144 (275)
T PRK13639 74 LEVRKTVGIVFQNPDDQLFAPTVEEDVAF-GPLN------LGLSKEEVE--KRVKEALKAVGMEGFENKPPHHLSGGQKK 144 (275)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHH-HHHH------cCCCHHHHH--HHHHHHHHHCCCchhhcCChhhCCHHHHH
Confidence 235678999999973 2234588666542 2111 012222221 2233344333332 578889999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~ 261 (606)
|+.||+||+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.++||++++|++|++++.|++++
T Consensus 145 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 223 (275)
T PRK13639 145 RVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKE 223 (275)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999999877999999999976 5678999999999999999999988
Q ss_pred HHH---HHHhCCCC
Q psy13765 262 LVN---YLSSVNLP 272 (606)
Q Consensus 262 ~~~---~f~~~g~~ 272 (606)
+.+ ..+..|.+
T Consensus 224 ~~~~~~~~~~~~~~ 237 (275)
T PRK13639 224 VFSDIETIRKANLR 237 (275)
T ss_pred HhcChHHHHhcCCC
Confidence 753 33444544
No 118
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.4e-40 Score=326.73 Aligned_cols=205 Identities=27% Similarity=0.464 Sum_probs=161.3
Q ss_pred EEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhhh
Q psy13765 30 KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INAF 106 (606)
Q Consensus 30 ~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~~ 106 (606)
+++|++++++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.. ...+
T Consensus 1 ~~~~l~~~~~~------~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~ 73 (211)
T cd03225 1 ELKNLSFSYPD------GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-TSGEVLVDGKDLTKLSLKEL 73 (211)
T ss_pred CceeEEEecCC------CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEcccCCHHHH
Confidence 36789988631 125799999999999999999999999999999999999876 5999999997643 2345
Q ss_pred cccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHH
Q psy13765 107 RRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 107 ~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl 183 (606)
++.++|++|++. .++.+|+.+.+... ... ...+..+ +++ +.+++..-.+- .++.+...+|||||||+
T Consensus 74 ~~~i~~~~q~~~~~~~~~t~~~~l~~~-~~~------~~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 143 (211)
T cd03225 74 RRKVGLVFQNPDDQFFGPTVEEEVAFG-LEN------LGLPEEEIEER---VEEALELVGLEGLRDRSPFTLSGGQKQRV 143 (211)
T ss_pred HhhceEEecChhhhcCCCcHHHHHHHH-HHH------cCCCHHHHHHH---HHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 678999999975 35667886655431 100 0112111 222 23333332331 45788889999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|+
T Consensus 144 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 144 AIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999877999999999976 5778899999999885
No 119
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-40 Score=329.13 Aligned_cols=215 Identities=23% Similarity=0.347 Sum_probs=169.9
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~ 104 (606)
.++++||+++|+.+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... .
T Consensus 5 ~l~~~~l~~~~~~~----~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~i~~~~~~ 79 (233)
T PRK11629 5 LLQCDNLCKRYQEG----SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP-TSGDVIFNGQPMSKLSSA 79 (233)
T ss_pred eEEEEeEEEEcCCC----CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcCcCCHH
Confidence 48999999997421 0125699999999999999999999999999999999999876 59999999986532 1
Q ss_pred ---hh-cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCch
Q psy13765 105 ---AF-RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPND 178 (606)
Q Consensus 105 ---~~-~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g 178 (606)
.. ++.++|++|++.+++.+|+.+.+... .. ..+.+.. .++|+.-+.+.+ .+- ..+++...+|||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~-~~------~~~~~~~~~~~~~~~~l~~~---gl~~~~~~~~~~LSgG 149 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMP-LL------IGKKKPAEINSRALEMLAAV---GLEHRANHRPSELSGG 149 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCCCHHHHHHHH-HH------hcCCCHHHHHHHHHHHHHHc---CCchhhhCChhhCCHH
Confidence 12 25799999999999999997766531 10 0012211 233433222222 221 457788899999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++. +. .+|++++|++|+++..+
T Consensus 150 ~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~-~~~~~~~l~~G~i~~~~ 227 (233)
T PRK11629 150 ERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AK-RMSRQLEMRDGRLTAEL 227 (233)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HH-hhCEEEEEECCEEEEEe
Confidence 99999999999999999999999999999999999999999976 58999999999874 54 46899999999999887
Q ss_pred Ch
Q psy13765 258 AT 259 (606)
Q Consensus 258 ~~ 259 (606)
+.
T Consensus 228 ~~ 229 (233)
T PRK11629 228 SL 229 (233)
T ss_pred cc
Confidence 63
No 120
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=7.7e-40 Score=330.96 Aligned_cols=224 Identities=24% Similarity=0.285 Sum_probs=172.3
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCccEEEECCccCCh---h
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-NGVTGQILTNGHSRNI---N 104 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~-~~~~G~I~~~G~~~~~---~ 104 (606)
|+++||+++|+ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ ++.+|+|.++|++... .
T Consensus 1 l~~~~l~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSVE--------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEEC--------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHH
Confidence 46899999873 3569999999999999999999999999999999999852 2369999999986432 2
Q ss_pred hh-cccEEEEccCCCCCCCCcHHHHHHHc-CCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCC-CCCchhh
Q psy13765 105 AF-RRVSCYIQQDDRLQPLLTIENVMSLL-GLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTT-SNPNDQK 180 (606)
Q Consensus 105 ~~-~~~~~yv~Q~~~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~-~~s~g~~ 180 (606)
.. +..++|++|++.+++.+|+.+.+... ....... .....+..+ .+++.-+.+.+.-++ -+.|.+.. .+|+|||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSAR-GEEPLDLLDFLKLLKAKLALLGMDE-EFLNRSVNEGFSGGEK 150 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhccc-ccccccHHHHHHHHHHHHHHcCCch-hhcccccccCcCHHHH
Confidence 22 34589999999999999998776542 1100000 000112222 234432333222111 13566665 5999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cceeeeecCCcEEEEcCh
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM-FDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~~~~~G~~ 259 (606)
||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+... ||++++|++|++++.|++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999878999999999987 46666 899999999999999998
Q ss_pred hHHH
Q psy13765 260 DQLV 263 (606)
Q Consensus 260 ~~~~ 263 (606)
+++.
T Consensus 230 ~~~~ 233 (243)
T TIGR01978 230 ELAK 233 (243)
T ss_pred HHhc
Confidence 7543
No 121
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-39 Score=337.06 Aligned_cols=228 Identities=23% Similarity=0.374 Sum_probs=178.1
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~ 104 (606)
.++++||++.|+. ..+.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.. ..
T Consensus 5 ~l~~~~l~~~~~~------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p-~~G~i~~~g~~i~~~~~~ 77 (279)
T PRK13635 5 IIRVEHISFRYPD------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP-EAGTITVGGMVLSEETVW 77 (279)
T ss_pred eEEEEEEEEEeCC------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEECCcCcHH
Confidence 4899999998731 235699999999999999999999999999999999999877 5999999998653 23
Q ss_pred hhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-cccCCCCCCCCchhhh
Q psy13765 105 AFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-MFLDEPTTSNPNDQKK 181 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~k 181 (606)
..++.++|++|++. .++..|+.+.+.. +... .+...-+ ++++.-+.+.+ .+ -..+.+...+|+||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~~~tv~enl~~-~~~~------~~~~~~~~~~~~~~~l~~~---gL~~~~~~~~~~LS~G~~q 147 (279)
T PRK13635 78 DVRRQVGMVFQNPDNQFVGATVQDDVAF-GLEN------IGVPREEMVERVDQALRQV---GMEDFLNREPHRLSGGQKQ 147 (279)
T ss_pred HHhhheEEEEeCHHHhcccccHHHHHhh-hHhh------CCCCHHHHHHHHHHHHHHc---CChhhhhCCcccCCHHHHH
Confidence 45678999999973 6666788666543 1111 0112211 23333222222 22 1467788889999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
|+.||+||+.+|++|+|||||+|||+.++..+.++|++++++ |+|||+++|+++. +. .||++++|++|++++.|+++
T Consensus 148 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g~~~ 225 (279)
T PRK13635 148 RVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEGTPE 225 (279)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999876 8999999999874 54 59999999999999999988
Q ss_pred HHHH---HHHhCCCCCC
Q psy13765 261 QLVN---YLSSVNLPCP 274 (606)
Q Consensus 261 ~~~~---~f~~~g~~~~ 274 (606)
++.. .+...+..+|
T Consensus 226 ~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 226 EIFKSGHMLQEIGLDVP 242 (279)
T ss_pred HHhcCHHHHHHcCCCCC
Confidence 7653 3334454433
No 122
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=333.29 Aligned_cols=219 Identities=24% Similarity=0.320 Sum_probs=175.4
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~ 102 (606)
..|+++|+++.|+ ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ ..+|+|.++|++..
T Consensus 11 ~~l~~~~l~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 11 PQIKVENLNLWYG--------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred eeEEEeeeEEEeC--------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 3699999999862 35699999999999999999999999999999999999764 25899999997642
Q ss_pred -----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCc-c-cccCCCCCC
Q psy13765 103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPR-V-MFLDEPTTS 174 (606)
Q Consensus 103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~-~-~~~de~~~~ 174 (606)
...+++.++|++|++.+++ .|+.+.+... ... .+++..+ ++++.-+.+.+.-.+ + -.+|.+...
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~-~~~------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 154 (258)
T PRK14268 83 EPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYG-PRI------HGANKKDLDGVVENALRSAALWDETSDRLKSPALS 154 (258)
T ss_pred cccchHHHHhhhEEEEecCCccCc-ccHHHHHHHH-HHH------cCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhh
Confidence 1245678999999998888 8887666431 110 0122222 233333333322111 1 146889999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
+|+||||||.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++. .+.++||++++|++|+++
T Consensus 155 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~ 232 (258)
T PRK14268 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELI 232 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999965 799999999976 467899999999999999
Q ss_pred EEcChhHHH
Q psy13765 255 YQGATDQLV 263 (606)
Q Consensus 255 ~~G~~~~~~ 263 (606)
+.|+++++.
T Consensus 233 ~~~~~~~~~ 241 (258)
T PRK14268 233 EFGQTRQIF 241 (258)
T ss_pred EeCCHHHHh
Confidence 999998764
No 123
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=332.56 Aligned_cols=219 Identities=24% Similarity=0.291 Sum_probs=173.6
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CccEEEECCccCC-
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSRN- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~----~~G~I~~~G~~~~- 102 (606)
.++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++. .+|+|.++|++..
T Consensus 7 ~l~~~~l~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (254)
T PRK14273 7 IIETENLNLFYT--------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78 (254)
T ss_pred eEEEeeeEEEeC--------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccc
Confidence 699999999873 356999999999999999999999999999999999997652 4899999998642
Q ss_pred ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCC-cc-cccCCCCCCC
Q psy13765 103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNP-RV-MFLDEPTTSN 175 (606)
Q Consensus 103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~-~~-~~~de~~~~~ 175 (606)
....++.++|++|++.+++ .|+.+.+.. +.... + ..... .++++.-+...+.-. .+ -.+|.+...+
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~-~~~~~-~----~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 151 (254)
T PRK14273 79 NNFDILELRRKIGMVFQTPNPFL-MSIYDNISY-GPKIH-G----TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSL 151 (254)
T ss_pred ccccHHHHhhceEEEeecccccc-CcHHHHHHH-HHHhc-C----CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccC
Confidence 2345678999999998875 788776543 11110 0 01111 123333222222110 00 1367888999
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
|||||||+.|||||+.+|++|+|||||+|||+.++..+.++|+++++ +.|||+++|+++ .+.+++||+++|++|+++.
T Consensus 152 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~ 229 (254)
T PRK14273 152 SGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIEE 229 (254)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999964 799999999987 4678999999999999999
Q ss_pred EcChhHHH
Q psy13765 256 QGATDQLV 263 (606)
Q Consensus 256 ~G~~~~~~ 263 (606)
.|+++++.
T Consensus 230 ~g~~~~~~ 237 (254)
T PRK14273 230 ESSTDELF 237 (254)
T ss_pred eCCHHHHH
Confidence 99998874
No 124
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=7.7e-40 Score=326.94 Aligned_cols=207 Identities=23% Similarity=0.350 Sum_probs=165.7
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----- 103 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----- 103 (606)
|+++|++++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 2 IRFEHVSKAYL-------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP-SAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred EEEEeeEEEec-------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccCChhH
Confidence 78999999873 235699999999999999999999999999999999999876 59999999976431
Q ss_pred -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765 104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQK 180 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~ 180 (606)
..+++.++|++|++.+++..|+.+.+... ... .+.+.-+ ++++. +++..-.+- ..+.+...+|+|||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~-~~~------~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~ 143 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIP-LII------AGASGDDIRRRVS---AALDKVGLLDKAKNFPIQLSGGEQ 143 (222)
T ss_pred HHHHHhheEEEecCccccccccHHHHHHhH-HHh------cCCCHHHHHHHHH---HHHHHcCChhhhhCCchhCCHHHH
Confidence 12467899999999988888986665431 100 0112111 22222 222222221 35778889999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|+++ .+...||++++|++|+++
T Consensus 144 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 144 QRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 9999999999999999999999999999999999999999877899999999987 477889999999999975
No 125
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-39 Score=333.95 Aligned_cols=228 Identities=23% Similarity=0.368 Sum_probs=176.3
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~ 104 (606)
.|+++|++++|+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ..
T Consensus 7 ~l~i~~l~~~~~~------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~ 79 (269)
T PRK13648 7 IIVFKNVSFQYQS------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV-KSGEIFYNNQAITDDNFE 79 (269)
T ss_pred eEEEEEEEEEcCC------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCcCCHH
Confidence 5899999998732 224699999999999999999999999999999999999876 5999999998653 23
Q ss_pred hhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765 105 AFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPNDQKK 181 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k 181 (606)
..++.++|++|++. +++..|+.+.+.. ++... ..+.- .++++ .+++..-++. ..|.....+|+||||
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~-~~~~~------~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~G~~q 149 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAF-GLENH------AVPYDEMHRRV---SEALKQVDMLERADYEPNALSGGQKQ 149 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHh-hHHhc------CCCHHHHHHHH---HHHHHHcCCchhhhCCcccCCHHHHH
Confidence 56778999999984 5666776444322 21110 01111 12232 2333332332 567788889999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
|+.||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++.. +. .+|++++|++|++++.|+++
T Consensus 150 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~d~i~~l~~G~i~~~g~~~ 227 (269)
T PRK13648 150 RVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EADHVIVMNKGTVYKEGTPT 227 (269)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999865 8999999999874 54 49999999999999999998
Q ss_pred HHHH---HHHhCCCCCC
Q psy13765 261 QLVN---YLSSVNLPCP 274 (606)
Q Consensus 261 ~~~~---~f~~~g~~~~ 274 (606)
++.+ .+...|.++|
T Consensus 228 ~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 228 EIFDHAEELTRIGLDLP 244 (269)
T ss_pred HHhcCHHHHHhcCCCCC
Confidence 7643 3444454444
No 126
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=332.18 Aligned_cols=220 Identities=26% Similarity=0.335 Sum_probs=176.0
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CccEEEECCccCC-
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSRN- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~----~~G~I~~~G~~~~- 102 (606)
.|+++||+++|+ ++++|+|+|+++++||+++|+||||||||||+++|+|+.++. .+|+|.++|++..
T Consensus 4 ~l~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (253)
T PRK14267 4 AIETVNLRVYYG--------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS 75 (253)
T ss_pred eEEEEeEEEEeC--------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 588999999873 356999999999999999999999999999999999997652 4899999998653
Q ss_pred ----hhhhcccEEEEccCCCCCCCCcHHHHHHHc-CCccccCCccccCCh-HHHHHHHHHHHHhcC-Ccc-cccCCCCCC
Q psy13765 103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLL-GLDESQNTRSSQLSG-GQKKRLSIALELINN-PRV-MFLDEPTTS 174 (606)
Q Consensus 103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~-~~~-~~~de~~~~ 174 (606)
...+++.++|++|++.+++.+|+.+.+... ..... . .+. ..++++.-+.+.+.- +.+ -.+|.+...
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-----~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 149 (253)
T PRK14267 76 PDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-----V-KSKKELDERVEWALKKAALWDEVKDRLNDYPSN 149 (253)
T ss_pred cccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-----c-CCHHHHHHHHHHHHHHcCCccchhhhhccChhh
Confidence 234567899999999999999987766431 11100 0 011 112233322222221 111 146888999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
+|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|+++
T Consensus 150 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 227 (253)
T PRK14267 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLI 227 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999975 699999999986 577899999999999999
Q ss_pred EEcChhHHH
Q psy13765 255 YQGATDQLV 263 (606)
Q Consensus 255 ~~G~~~~~~ 263 (606)
+.|+++++.
T Consensus 228 ~~~~~~~~~ 236 (253)
T PRK14267 228 EVGPTRKVF 236 (253)
T ss_pred EeCCHHHHH
Confidence 999988764
No 127
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.1e-39 Score=332.87 Aligned_cols=219 Identities=20% Similarity=0.379 Sum_probs=176.4
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA 105 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~ 105 (606)
|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ...
T Consensus 2 l~~~~l~~~~~--------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~ 72 (256)
T TIGR03873 2 LRLSRVSWSAG--------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP-DAGTVDLAGVDLHGLSRRA 72 (256)
T ss_pred ceEEeEEEEEC--------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCCEEEECCEEcccCCHHH
Confidence 68899999873 35799999999999999999999999999999999999876 5999999997643 234
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCC-hHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLS-GGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lS-gGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl 183 (606)
.++.++|++|++.+++.+|+.+.+....... .. ..... .-+.+++. +++..-.+ -.+|.+...+|+|||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qrl 146 (256)
T TIGR03873 73 RARRVALVEQDSDTAVPLTVRDVVALGRIPH-RS--LWAGDSPHDAAVVD---RALARTELSHLADRDMSTLSGGERQRV 146 (256)
T ss_pred HhhheEEecccCccCCCCCHHHHHHhcchhh-hh--hccCCCHHHHHHHH---HHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 5567999999998888889877665421110 00 00011 11233433 22222222 257889999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
.||+||+.+|++++|||||+|||+.+...+.+.|++++++|.|||+++|+++ .+.++||++++|++|+++..|+++++.
T Consensus 147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 9999999999999999999999999999999999999877999999999987 577899999999999999999987753
No 128
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-39 Score=333.14 Aligned_cols=210 Identities=22% Similarity=0.323 Sum_probs=170.0
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~ 108 (606)
|+++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... .++
T Consensus 2 l~~~~l~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~--~~~ 70 (255)
T PRK11248 2 LQISHLYADYG--------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY-QHGSITLDGKPVEG--PGA 70 (255)
T ss_pred EEEEEEEEEeC--------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCC--CCC
Confidence 78999999872 35699999999999999999999999999999999999876 59999999987542 234
Q ss_pred cEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHH
Q psy13765 109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIA 186 (606)
Q Consensus 109 ~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA 186 (606)
.++|++|++.+++.+|+.+.+... .. ..++...+ ++++. +++..-.+- .++.+...+|||||||+.||
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~-~~------~~~~~~~~~~~~~~---~~l~~~gl~~~~~~~~~~LSgGq~qrl~la 140 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFG-LQ------LAGVEKMQRLEIAH---QMLKKVGLEGAEKRYIWQLSGGQRQRVGIA 140 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhH-HH------HcCCCHHHHHHHHH---HHHHHcCChhHhhCChhhCCHHHHHHHHHH
Confidence 689999999999989987765431 11 00122222 33332 233222221 45788899999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeec--CCcEEEEcChh
Q psy13765 187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLS--GGQCLYQGATD 260 (606)
Q Consensus 187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~--~G~~~~~G~~~ 260 (606)
+||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.++||++++|+ +|+++..++.+
T Consensus 141 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 141 RALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999999999865 5899999999987 5778999999998 59999888754
No 129
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=4.1e-40 Score=326.71 Aligned_cols=211 Identities=26% Similarity=0.430 Sum_probs=164.1
Q ss_pred EEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhccc
Q psy13765 30 KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRV 109 (606)
Q Consensus 30 ~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~ 109 (606)
+++||+++|+ ++.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.. ..++.
T Consensus 1 ~~~~l~~~~~--------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~--~~~~~ 69 (213)
T cd03235 1 EVEDLTVSYG--------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP-TSGSIRVFGKPLE--KERKR 69 (213)
T ss_pred CcccceeEEC--------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCCEEEECCccHH--HHHhh
Confidence 3678888862 35699999999999999999999999999999999999876 5999999997653 45678
Q ss_pred EEEEccCCCCCC--CCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH
Q psy13765 110 SCYIQQDDRLQP--LLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL 187 (606)
Q Consensus 110 ~~yv~Q~~~l~~--~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~ 187 (606)
++|++|++.+++ .+|+.+.+....... .. ..+....-.++++.-+.+.+.-. -..+.+...+|||||||+.||+
T Consensus 70 i~~v~q~~~~~~~~~~tv~e~l~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~ 145 (213)
T cd03235 70 IGYVPQRRSIDRDFPISVRDVVLMGLYGH-KG-LFRRLSKADKAKVDEALERVGLS--ELADRQIGELSGGQQQRVLLAR 145 (213)
T ss_pred eEEeccccccccCCCCcHHHHHHhccccc-cc-cccCCCHHHHHHHHHHHHHcCCH--HHHhCCcccCCHHHHHHHHHHH
Confidence 999999987643 378877665421110 00 00011112234443333332211 1467888999999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.++||++++|++| +++.|
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999999999878999999999976 577899999999876 55544
No 130
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-40 Score=323.11 Aligned_cols=198 Identities=22% Similarity=0.447 Sum_probs=173.6
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR 107 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~ 107 (606)
.+++++|++++ +.+.+++|+||++++|++++++|||||||||.+++|.|++.+ ++|+|.++|.+.+ ...+
T Consensus 2 ~L~ie~vtK~F--------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~-~~G~I~~~g~~~~-~~~~ 71 (300)
T COG4152 2 ALEIEGVTKSF--------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP-TEGEITWNGGPLS-QEIK 71 (300)
T ss_pred ceEEecchhcc--------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc-cCceEEEcCcchh-hhhh
Confidence 58899999986 678999999999999999999999999999999999999887 5999999999876 4567
Q ss_pred ccEEEEccCCCCCCCCcHHH----------------------HHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc
Q psy13765 108 RVSCYIQQDDRLQPLLTIEN----------------------VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV 165 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~----------------------~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~ 165 (606)
.+|||+|.+.-|+|.+||++ +|+.+++......++.+||.|++|++.+-
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfi--------- 142 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFI--------- 142 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHH---------
Confidence 88999999999999999844 44455666666666667777777776654
Q ss_pred cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhccee
Q psy13765 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV 245 (606)
Q Consensus 166 ~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v 245 (606)
.+++++|++++||||+|||||.+.+.+.+.+.+++++|.|||+++|+++ .+.++||++
T Consensus 143 ---------------------saviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~l 200 (300)
T COG4152 143 ---------------------SAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRL 200 (300)
T ss_pred ---------------------HHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhh
Confidence 4555559999999999999999999999999999999999999999987 589999999
Q ss_pred eeecCCcEEEEcChhHHHHHH
Q psy13765 246 YLLSGGQCLYQGATDQLVNYL 266 (606)
Q Consensus 246 ~~L~~G~~~~~G~~~~~~~~f 266 (606)
++|++|+.|.+|+.+++.+-|
T Consensus 201 lmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 201 LMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred heecCCceEEeccHHHHHHhc
Confidence 999999999999999998744
No 131
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=8.5e-40 Score=326.15 Aligned_cols=209 Identities=25% Similarity=0.398 Sum_probs=165.5
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NA 105 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~ 105 (606)
|+++||+++|+.+ .+.+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... ..
T Consensus 2 l~~~~v~~~~~~~----~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~ 76 (221)
T TIGR02211 2 LKCENLGKRYQEG----KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP-TSGEVLFNGQSLSKLSSNE 76 (221)
T ss_pred EEEEeeeEEccCC----CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEhhhcCHhH
Confidence 6789999987421 1125699999999999999999999999999999999999876 59999999986431 11
Q ss_pred ---hc-ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchh
Q psy13765 106 ---FR-RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQ 179 (606)
Q Consensus 106 ---~~-~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~ 179 (606)
++ +.++|++|++.+++.+|+.+.+.... . ...+...+ ++++ .+++..-.+- .+|.+...+|+||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~-~------~~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~G~ 146 (221)
T TIGR02211 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPL-L------IGKKSVKEAKERA---YEMLEKVGLEHRINHRPSELSGGE 146 (221)
T ss_pred HHHHHHhcEEEEecccccCCCCcHHHHHHHHH-H------hcCCCHHHHHHHH---HHHHHHcCChhhhhCChhhCCHHH
Confidence 23 57999999999999899877665311 0 00111111 2233 3343333332 4688889999999
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
|||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+ +.+|++++|++|+++
T Consensus 147 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 147 RQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999999999864 899999999987 45 458999999999875
No 132
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.2e-39 Score=329.60 Aligned_cols=221 Identities=24% Similarity=0.332 Sum_probs=175.9
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~ 104 (606)
.|+++|++++++ ++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... .
T Consensus 2 ~i~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~ 72 (242)
T TIGR03411 2 ILYLEGLSVSFD--------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP-DEGSVLFGGTDLTGLPEH 72 (242)
T ss_pred eEEEEeeEEEcC--------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEECCeecCCCCHH
Confidence 378999999872 35699999999999999999999999999999999999876 59999999976432 2
Q ss_pred -hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccC---ChH-HHHHHHHHHHHhcCCcccccCCCCCCCCchh
Q psy13765 105 -AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL---SGG-QKKRLSIALELINNPRVMFLDEPTTSNPNDQ 179 (606)
Q Consensus 105 -~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~l---SgG-qrqRv~ia~~L~~~~~~~~~de~~~~~s~g~ 179 (606)
..++.++|++|++.+++.+|+.+.+....... ......+ ... .++++.-+.+.+.-. -..|.+...+|+||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Ge 148 (242)
T TIGR03411 73 QIARAGIGRKFQKPTVFENLTVFENLELALPRD--KSVFASLFFRLSAEEKDRIEEVLETIGLA--DEADRLAGLLSHGQ 148 (242)
T ss_pred HHHhcCeeEeccccccCCCCCHHHHHHHhhhcc--cccccccccccHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHH
Confidence 23456999999999999999987765422111 0000011 111 233333233332211 14688899999999
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
|||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.++||++++|++|+++..|++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeCCH
Confidence 9999999999999999999999999999999999999999976 799999999976 57789999999999999999998
Q ss_pred hHHH
Q psy13765 260 DQLV 263 (606)
Q Consensus 260 ~~~~ 263 (606)
+++.
T Consensus 227 ~~~~ 230 (242)
T TIGR03411 227 DQVQ 230 (242)
T ss_pred HHHh
Confidence 7763
No 133
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=8.7e-40 Score=371.62 Aligned_cols=200 Identities=32% Similarity=0.526 Sum_probs=163.7
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc---CC
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS---RN 102 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~---~~ 102 (606)
.-.++++||+|+|.. .+..+|+|+|++|++||.+||+|+||||||||+|+|+|++.| .+|+|.+||.+ .+
T Consensus 469 ~g~I~~~nvsf~y~~------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p-~~G~I~~dg~dl~~i~ 541 (709)
T COG2274 469 QGEIEFENVSFRYGP------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP-QQGRILLDGVDLNDID 541 (709)
T ss_pred CceEEEEEEEEEeCC------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEeHHhcC
Confidence 347999999999853 334799999999999999999999999999999999999887 59999999986 45
Q ss_pred hhhhcccEEEEccCCCCCCCCcH------------HHHHHHc--------------CCccccCCccccCChHHHHHHHHH
Q psy13765 103 INAFRRVSCYIQQDDRLQPLLTI------------ENVMSLL--------------GLDESQNTRSSQLSGGQKKRLSIA 156 (606)
Q Consensus 103 ~~~~~~~~~yv~Q~~~l~~~ltv------------~~~l~~~--------------gl~~~~~~~~~~lSgGqrqRv~ia 156 (606)
...+|+.+|||+||+.++....- |++++.+ |++....+...+||||||||++|
T Consensus 542 ~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal- 620 (709)
T COG2274 542 LASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL- 620 (709)
T ss_pred HHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH-
Confidence 67899999999999998865322 3333322 33333334444566666666665
Q ss_pred HHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765 157 LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSA 236 (606)
Q Consensus 157 ~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 236 (606)
||||+++|+||+||||||+||+.+...+.+.|+++.+ |+|+|+++|+++
T Consensus 621 -----------------------------ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~- 669 (709)
T COG2274 621 -----------------------------ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS- 669 (709)
T ss_pred -----------------------------HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch-
Confidence 5555555999999999999999999999999999865 799999999987
Q ss_pred HHHhhcceeeeecCCcEEEEcChhHHHHH
Q psy13765 237 TLFQMFDQVYLLSGGQCLYQGATDQLVNY 265 (606)
Q Consensus 237 ~i~~~~D~v~~L~~G~~~~~G~~~~~~~~ 265 (606)
..+.|||+++|++|+++.+|+++|+.+.
T Consensus 670 -ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 670 -TIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred -HhhhccEEEEccCCceeccCCHHHHHHh
Confidence 4689999999999999999999998863
No 134
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.3e-39 Score=334.09 Aligned_cols=225 Identities=25% Similarity=0.373 Sum_probs=177.0
Q ss_pred EEEEEeeEEEEecCCcc-cccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765 28 EIKFKDLTYTVSTGLGF-KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--- 103 (606)
.|+++||+++++.+... .++++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP-AQGTVSFRGQDLYQLDR 80 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEccccCH
Confidence 37899999998421000 01246799999999999999999999999999999999999876 59999999976531
Q ss_pred h---hhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCcc--cccCCCCCCC
Q psy13765 104 N---AFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRV--MFLDEPTTSN 175 (606)
Q Consensus 104 ~---~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~--~~~de~~~~~ 175 (606)
. .+++.++|++|++ .+++.+|+.+.+... +... ..++.- .++++. +++..-.+ .++|.+...+
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~-~~~~-----~~~~~~~~~~~~~---~~l~~~gl~~~~~~~~~~~L 151 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEP-LRHL-----TSLDESEQKARIA---ELLDMVGLRSEDADKLPRQL 151 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHH-HHHh-----cCCCHHHHHHHHH---HHHHHcCCChhhhhCChhhC
Confidence 1 2456799999997 467788987765421 1100 112221 233333 23333233 2568899999
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999875 899999999976 567899999999999999
Q ss_pred EEcChhHHH
Q psy13765 255 YQGATDQLV 263 (606)
Q Consensus 255 ~~G~~~~~~ 263 (606)
+.|+++++.
T Consensus 231 ~~g~~~~~~ 239 (265)
T TIGR02769 231 EECDVAQLL 239 (265)
T ss_pred EECCHHHHc
Confidence 999998874
No 135
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=330.93 Aligned_cols=220 Identities=25% Similarity=0.329 Sum_probs=173.3
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--C--CCccEEEECCccC
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--N--GVTGQILTNGHSR 101 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~--~~~G~I~~~G~~~ 101 (606)
+..|+++||+++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.. + +.+|+|.++|++.
T Consensus 4 ~~~l~~~~l~~~~~--------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 4 PPKMEARGLSFFYG--------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred CcEEEEeeeEEEEC--------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence 34699999999873 3569999999999999999999999999999999999853 1 2589999999765
Q ss_pred C-----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccC-Ch-HHHHHHHHHHHHhcCCc-c-cccCCCC
Q psy13765 102 N-----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL-SG-GQKKRLSIALELINNPR-V-MFLDEPT 172 (606)
Q Consensus 102 ~-----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~l-Sg-GqrqRv~ia~~L~~~~~-~-~~~de~~ 172 (606)
. ...+++.++|++|++.+++. |+.+.+... ... . .. +. ..++++.-+.+.+.-.+ + -.+|++.
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~-~~~-~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (253)
T PRK14242 76 YDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYG-LRV-N-----GVKDKAYLAERVERSLRHAALWDEVKDRLHESA 147 (253)
T ss_pred cccccCHHHHhhcEEEEecCCCCCcC-cHHHHHHHH-HHH-c-----CCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc
Confidence 3 12456789999999988884 886655431 110 0 01 11 11233332222222111 1 1468889
Q ss_pred CCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 173 ~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
..+|||||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|+++ .+.++||++++|++|+
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~ 225 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGK 225 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999954 799999999987 4678999999999999
Q ss_pred EEEEcChhHHH
Q psy13765 253 CLYQGATDQLV 263 (606)
Q Consensus 253 ~~~~G~~~~~~ 263 (606)
++..|+++++.
T Consensus 226 i~~~g~~~~~~ 236 (253)
T PRK14242 226 LIEVGPTEQIF 236 (253)
T ss_pred EEEeCCHHHHH
Confidence 99999988763
No 136
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-39 Score=335.22 Aligned_cols=222 Identities=19% Similarity=0.323 Sum_probs=172.7
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---- 103 (606)
.++++|++++|+... +...+.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~--~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNE--ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP-SEGKVYVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCC--CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEeccccccH
Confidence 589999999985210 01135799999999999999999999999999999999999876 59999999986532
Q ss_pred hhhcccEEEEccCCCC-CCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-cccCCCCCCCCchhh
Q psy13765 104 NAFRRVSCYIQQDDRL-QPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-MFLDEPTTSNPNDQK 180 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l-~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~ 180 (606)
...++.+||++|++.. +...|+.+.+.. +... .+.+..+ ++++. +++..-.+ -..|.+...+|+|||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~-~~~~------~~~~~~~~~~~~~---~~l~~~gL~~~~~~~~~~LS~G~~ 150 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIVATIVEEDVAF-GPEN------LGIPPEEIRERVD---ESLKKVGMYEYRRHAPHLLSGGQK 150 (280)
T ss_pred HHHhhheEEEecChhhhhccccHHHHHHh-hHhh------cCCCHHHHHHHHH---HHHHHCCCHhHhhCCcccCCHHHH
Confidence 3457789999999742 223567655432 1110 0122222 23332 23332223 146788889999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
||+.||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++. +. .||++++|++|+++..|++
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999764 9999999999874 54 4999999999999999999
Q ss_pred hHHHH
Q psy13765 260 DQLVN 264 (606)
Q Consensus 260 ~~~~~ 264 (606)
+++..
T Consensus 229 ~~~~~ 233 (280)
T PRK13633 229 KEIFK 233 (280)
T ss_pred HHHhc
Confidence 88753
No 137
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=346.34 Aligned_cols=209 Identities=23% Similarity=0.402 Sum_probs=166.5
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC------
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN------ 102 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~------ 102 (606)
|++ ||+++|. ++. + |+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++..
T Consensus 2 l~~-~l~k~~~--------~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p-~~G~I~~~g~~~~~~~~~~ 69 (352)
T PRK11144 2 LEL-NFKQQLG--------DLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP-QKGRIVLNGRVLFDAEKGI 69 (352)
T ss_pred eEE-EEEEEeC--------CEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccccccc
Confidence 566 8888862 232 3 89999999999999999999999999999999876 5999999997643
Q ss_pred -hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhh
Q psy13765 103 -INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181 (606)
Q Consensus 103 -~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~k 181 (606)
....++.++||+|++.+++.+|+.+.+.. ++.. ..++++.-..+.+.-. -.+|.+...|||||||
T Consensus 70 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~-~~~~-----------~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~q 135 (352)
T PRK11144 70 CLPPEKRRIGYVFQDARLFPHYKVRGNLRY-GMAK-----------SMVAQFDKIVALLGIE--PLLDRYPGSLSGGEKQ 135 (352)
T ss_pred ccchhhCCEEEEcCCcccCCCCcHHHHHHh-hhhh-----------hhHHHHHHHHHHcCCc--hhhhCCcccCCHHHHH
Confidence 12346789999999999999998665542 2110 1122332222222111 1456777778888888
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
|+.|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.++||++++|++|+++..|+++
T Consensus 136 RvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~ 214 (352)
T PRK11144 136 RVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLE 214 (352)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHH
Confidence 888888888889999999999999999999999999999876 899999999986 578999999999999999999999
Q ss_pred HHHH
Q psy13765 261 QLVN 264 (606)
Q Consensus 261 ~~~~ 264 (606)
++..
T Consensus 215 ~i~~ 218 (352)
T PRK11144 215 EVWA 218 (352)
T ss_pred HHHh
Confidence 8753
No 138
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.3e-39 Score=317.31 Aligned_cols=191 Identities=47% Similarity=0.843 Sum_probs=159.0
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC--CCCCccEEEECCccCChh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR--SNGVTGQILTNGHSRNIN 104 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~--~~~~~G~I~~~G~~~~~~ 104 (606)
+.|+++||+++|+... +...+.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|++....
T Consensus 2 ~~l~~~~ls~~~~~~~--~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~-~~G~i~~~g~~~~~~ 78 (194)
T cd03213 2 VTLSFRNLTVTVKSSP--SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG-VSGEVLINGRPLDKR 78 (194)
T ss_pred cEEEEEeeEEEEecCC--CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-CceEEEECCEeCchH
Confidence 4689999999984210 001357999999999999999999999999999999999998 65 699999999876544
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~ 184 (606)
..++.++|++|++.+++.+|+.+.+.... ...+||||||||+++|++|+.+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~~~i~~~~-------~~~~LS~G~~qrv~laral~~~---------------------- 129 (194)
T cd03213 79 SFRKIIGYVPQDDILHPTLTVRETLMFAA-------KLRGLSGGERKRVSIALELVSN---------------------- 129 (194)
T ss_pred hhhheEEEccCcccCCCCCcHHHHHHHHH-------HhccCCHHHHHHHHHHHHHHcC----------------------
Confidence 56778999999999999999977654311 0116777777777766655555
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++...+.+.||++++|++|++++.|
T Consensus 130 --------p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 130 --------PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred --------CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998789999999999875577899999999999998764
No 139
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=342.52 Aligned_cols=229 Identities=19% Similarity=0.250 Sum_probs=176.6
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCccEEEECCccCC--
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN---GVTGQILTNGHSRN-- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~---~~~G~I~~~G~~~~-- 102 (606)
.|+++||+++|+.+ .+.+.+|+|||++|++||+++|+|+||||||||+++|+|+.++ ..+|+|.++|++..
T Consensus 3 ~L~v~~l~~~y~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~ 78 (330)
T PRK15093 3 LLDIRNLTIEFKTS----DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRL 78 (330)
T ss_pred eEEEeeeEEEEeCC----CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcC
Confidence 58999999998532 2345799999999999999999999999999999999999753 25899999998653
Q ss_pred -hhhh----cccEEEEccCCC--CCCCCcHHHHHHHcCCccccCCccccCCh-H-HHHHHHHHHHHhcCCcc-cccCCCC
Q psy13765 103 -INAF----RRVSCYIQQDDR--LQPLLTIENVMSLLGLDESQNTRSSQLSG-G-QKKRLSIALELINNPRV-MFLDEPT 172 (606)
Q Consensus 103 -~~~~----~~~~~yv~Q~~~--l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-G-qrqRv~ia~~L~~~~~~-~~~de~~ 172 (606)
.... ++.++||+|++. +.|.+|+.+.+... +...... ....+. . .++++.-+.+.+.-.+. -.+|...
T Consensus 79 ~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p 156 (330)
T PRK15093 79 SPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQN-IPGWTYK-GRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP 156 (330)
T ss_pred CHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHH-HHhhhcc-ccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc
Confidence 2222 347999999986 67888886655431 1100000 000111 1 12343322332222211 2467888
Q ss_pred CCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765 173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGG 251 (606)
Q Consensus 173 ~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G 251 (606)
..|||||||||.||+||+.+|++|++||||+|||+.++.+++++|++++++ |.|||++|||+. .+.++||++++|.+|
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~G 235 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYCG 235 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999999875 999999999976 577899999999999
Q ss_pred cEEEEcChhHHH
Q psy13765 252 QCLYQGATDQLV 263 (606)
Q Consensus 252 ~~~~~G~~~~~~ 263 (606)
++++.|+++++.
T Consensus 236 ~ive~g~~~~i~ 247 (330)
T PRK15093 236 QTVETAPSKELV 247 (330)
T ss_pred EEEEECCHHHHH
Confidence 999999998875
No 140
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-39 Score=333.78 Aligned_cols=220 Identities=23% Similarity=0.393 Sum_probs=176.4
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--- 102 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--- 102 (606)
...++++|++++++. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..
T Consensus 5 ~~~l~~~nl~~~~~~------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~i~~~~ 77 (271)
T PRK13632 5 SVMIKVENVSFSYPN------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP-QSGEIKIDGITISKEN 77 (271)
T ss_pred ceEEEEEeEEEEcCC------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEecCcCC
Confidence 346999999998731 245799999999999999999999999999999999999876 5999999998753
Q ss_pred hhhhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765 103 INAFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQK 180 (606)
Q Consensus 103 ~~~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~ 180 (606)
...+++.++|++|++. .++.+|+.+.+.. +... ...+..+. -..+.+++..-.+- .+|.+...+|+|||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~-~~~~------~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 148 (271)
T PRK13632 78 LKEIRKKIGIIFQNPDNQFIGATVEDDIAF-GLEN------KKVPPKKM--KDIIDDLAKKVGMEDYLDKEPQNLSGGQK 148 (271)
T ss_pred HHHHhcceEEEEeCHHHhcCcccHHHHHHh-HHHH------cCCCHHHH--HHHHHHHHHHcCCHHHhhCCcccCCHHHH
Confidence 2356778999999974 5667888766543 2111 01222211 12233444443332 56888899999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||+++|+++. + ..||++++|++|+++..|++
T Consensus 149 qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~~ 226 (271)
T PRK13632 149 QRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGKP 226 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999876 5999999999874 5 47999999999999999998
Q ss_pred hHHH
Q psy13765 260 DQLV 263 (606)
Q Consensus 260 ~~~~ 263 (606)
+++.
T Consensus 227 ~~~~ 230 (271)
T PRK13632 227 KEIL 230 (271)
T ss_pred HHHh
Confidence 8764
No 141
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-39 Score=349.01 Aligned_cols=225 Identities=19% Similarity=0.300 Sum_probs=177.8
Q ss_pred EEEEEeeEEEEecCCc----------------ccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc
Q psy13765 28 EIKFKDLTYTVSTGLG----------------FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT 91 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~----------------~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~ 91 (606)
.|+++||++.+..... ..++...+|+|+|++|++||+++|+||||||||||+|+|+|+.++ .+
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p-~s 82 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP-TR 82 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC-CC
Confidence 5888999988754310 012334589999999999999999999999999999999999876 59
Q ss_pred cEEEECCccCC---hhh----hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCC
Q psy13765 92 GQILTNGHSRN---INA----FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNP 163 (606)
Q Consensus 92 G~I~~~G~~~~---~~~----~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~ 163 (606)
|+|.++|++.. ... .++.++||+|++.+++.+|+.+.+... +. ..+.+.-+ ++++ .+++..-
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~-~~------~~~~~~~~~~~~~---~e~L~~~ 152 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFG-ME------LAGINAEERREKA---LDALRQV 152 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHH-HH------hcCCCHHHHHHHH---HHHHHHc
Confidence 99999998653 122 235799999999999999997766431 11 01122212 2333 2333333
Q ss_pred ccc-ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhh
Q psy13765 164 RVM-FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQM 241 (606)
Q Consensus 164 ~~~-~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~ 241 (606)
.+- .+|.+...||||||||+.|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++
T Consensus 153 gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~ 231 (400)
T PRK10070 153 GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRI 231 (400)
T ss_pred CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHh
Confidence 332 56888889999999999999999999999999999999999999999999999976 4899999999986 57789
Q ss_pred cceeeeecCCcEEEEcChhHHHH
Q psy13765 242 FDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 242 ~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
||++++|++|+++..|+++++..
T Consensus 232 ~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 232 GDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred CCEEEEEECCEEEecCCHHHHHh
Confidence 99999999999999999988743
No 142
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=335.47 Aligned_cols=233 Identities=28% Similarity=0.470 Sum_probs=202.2
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CccEEEECCccC-
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSR- 101 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~----~~G~I~~~G~~~- 101 (606)
.-++++||++.+... .+...++++|||++++||.+||+|.||||||-..+.+.|+++.+ .+|+|.++|++.
T Consensus 5 ~lL~v~nLsV~f~~~----~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll 80 (534)
T COG4172 5 PLLSIRNLSVAFHQE----GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80 (534)
T ss_pred cceeeeccEEEEecC----CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence 358999999988543 35678999999999999999999999999999999999987642 479999999863
Q ss_pred --Chhhhc----ccEEEEccCC--CCCCCCcH-----------------------HHHHHHcCCcc---ccCCccccCCh
Q psy13765 102 --NINAFR----RVSCYIQQDD--RLQPLLTI-----------------------ENVMSLLGLDE---SQNTRSSQLSG 147 (606)
Q Consensus 102 --~~~~~~----~~~~yv~Q~~--~l~~~ltv-----------------------~~~l~~~gl~~---~~~~~~~~lSg 147 (606)
+.++++ .+|+.+||+| .+.|..|+ -++++..|+.+ ..+..+++|||
T Consensus 81 ~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSG 160 (534)
T COG4172 81 AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSG 160 (534)
T ss_pred cCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCc
Confidence 333333 4699999998 45666664 34566677755 45677899999
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCCCC-----------------------------------------------------
Q psy13765 148 GQKKRLSIALELINNPRVMFLDEPTTS----------------------------------------------------- 174 (606)
Q Consensus 148 GqrqRv~ia~~L~~~~~~~~~de~~~~----------------------------------------------------- 174 (606)
||||||.||.||+++|++++.||||+.
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~ 240 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETG 240 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecC
Confidence 999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy13765 175 -------------------------------------------------------------------------------- 174 (606)
Q Consensus 175 -------------------------------------------------------------------------------- 174 (606)
T Consensus 241 ~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVG 320 (534)
T COG4172 241 TTETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVG 320 (534)
T ss_pred cHHHHhhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEe
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy13765 175 -------------------------------------------------------------------------------- 174 (606)
Q Consensus 175 -------------------------------------------------------------------------------- 174 (606)
T Consensus 321 ESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~ 400 (534)
T COG4172 321 ESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAA 400 (534)
T ss_pred cCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHH
Confidence
Q ss_pred --------------------------CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy13765 175 --------------------------NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTI 227 (606)
Q Consensus 175 --------------------------~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~ti 227 (606)
-|||||||++||||++.+|++++||||||.||-.-+.+++++|++|.++ |.+-
T Consensus 401 eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsY 480 (534)
T COG4172 401 ERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSY 480 (534)
T ss_pred HHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeE
Confidence 3569999999999999999999999999999999999999999999874 9999
Q ss_pred EEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 228 ICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 228 i~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
++++||.. .+..+||+|++|++|++++.|+.+++.+
T Consensus 481 LFISHDL~-VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 481 LFISHDLA-VVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred EEEeccHH-HHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 99999976 5889999999999999999999999864
No 143
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-39 Score=328.81 Aligned_cols=219 Identities=21% Similarity=0.329 Sum_probs=172.7
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC---CCC-CccEEEECCccCC
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR---SNG-VTGQILTNGHSRN 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~---~~~-~~G~I~~~G~~~~ 102 (606)
+.|+++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|+. ++. .+|+|.++|++..
T Consensus 2 ~~l~~~~~~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14245 2 VKIDARDVNFWYG--------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY 73 (250)
T ss_pred cEEEEEEEEEEEC--------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecc
Confidence 4688999999872 356999999999999999999999999999999999962 331 4899999998653
Q ss_pred h-----hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH--HHHHHHHHHHHhcCCc-c-cccCCCCC
Q psy13765 103 I-----NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG--QKKRLSIALELINNPR-V-MFLDEPTT 173 (606)
Q Consensus 103 ~-----~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG--qrqRv~ia~~L~~~~~-~-~~~de~~~ 173 (606)
. ...++.++|++|++.+++ .|+.+.+.. +... ...+.. ..+++.-+.+.+.-.+ + -.++++..
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~-~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 145 (250)
T PRK14245 74 DKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAY-GLRV------NGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAF 145 (250)
T ss_pred cccccHHHHhhheEEEecCCccCc-ccHHHHHHH-HHHH------cCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcc
Confidence 2 345678999999998887 588665542 1110 011111 1233322222222111 1 14678899
Q ss_pred CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
.+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||+++|+++ .+.+.||++++|++|++
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~ 223 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEM 223 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999995 4799999999987 46789999999999999
Q ss_pred EEEcChhHHH
Q psy13765 254 LYQGATDQLV 263 (606)
Q Consensus 254 ~~~G~~~~~~ 263 (606)
++.|+++++.
T Consensus 224 ~~~~~~~~~~ 233 (250)
T PRK14245 224 VEYDDTKKIF 233 (250)
T ss_pred EEECCHHHHh
Confidence 9999998874
No 144
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-39 Score=321.76 Aligned_cols=208 Identities=22% Similarity=0.411 Sum_probs=165.3
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR 107 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~ 107 (606)
|+++|++++++ ++. .|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... ...+
T Consensus 1 i~~~~l~~~~~--------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~-~~G~i~~~g~~~~~~~~~~ 69 (211)
T cd03298 1 VRLDKIRFSYG--------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP-QSGRVLINGVDVTAAPPAD 69 (211)
T ss_pred CEEEeEEEEeC--------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcCcCCHhH
Confidence 46899999873 222 399999999999999999999999999999999876 59999999986532 2235
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIA 186 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA 186 (606)
+.++|++|++.+++.+|+.+.+... ... .. ....-.++++. +++..-++- ..|.+...+|+|||||+.||
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~-~~~--~~---~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia 140 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLG-LSP--GL---KLTAEDRQAIE---VALARVGLAGLEKRLPGELSGGERQRVALA 140 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhcc-ccc--cc---CccHHHHHHHH---HHHHHcCCHHHHhCCcccCCHHHHHHHHHH
Confidence 6799999999999999997766431 111 00 01111223333 223222332 46788899999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|+++..|
T Consensus 141 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 141 RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999764 899999999976 467889999999999998654
No 145
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.4e-39 Score=318.55 Aligned_cols=189 Identities=26% Similarity=0.374 Sum_probs=158.5
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC--CCCCccEEEECCccCCh---
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR--SNGVTGQILTNGHSRNI--- 103 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~--~~~~~G~I~~~G~~~~~--- 103 (606)
++++|++++++ ++.+++|+|+++++||+++|+||||||||||+++|+|.. ++ .+|+|.+||++...
T Consensus 1 l~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p-~~G~i~~~g~~~~~~~~ 71 (200)
T cd03217 1 LEIKDLHVSVG--------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV-TEGEILFKGEDITDLPP 71 (200)
T ss_pred CeEEEEEEEeC--------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC-CccEEEECCEECCcCCH
Confidence 46899999873 356999999999999999999999999999999999984 44 68999999986532
Q ss_pred hhh-cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhH
Q psy13765 104 NAF-RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKR 182 (606)
Q Consensus 104 ~~~-~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~kr 182 (606)
... ++.++|++|++.+++..++++.++ ....+||||||||+++|++|+.+
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~l~---------~~~~~LS~G~~qrv~laral~~~-------------------- 122 (200)
T cd03217 72 EERARLGIFLAFQYPPEIPGVKNADFLR---------YVNEGFSGGEKKRNEILQLLLLE-------------------- 122 (200)
T ss_pred HHHhhCcEEEeecChhhccCccHHHHHh---------hccccCCHHHHHHHHHHHHHhcC--------------------
Confidence 222 445999999999999999988762 22356888888888866666666
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh-hcceeeeecCCcEEEEcChhH
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ-MFDQVYLLSGGQCLYQGATDQ 261 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~-~~D~v~~L~~G~~~~~G~~~~ 261 (606)
|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.+ .+|++++|++|++++.|+. +
T Consensus 123 ----------p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~-~ 190 (200)
T cd03217 123 ----------PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK-E 190 (200)
T ss_pred ----------CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH-H
Confidence 9999999999999999999999999999877999999999987 4555 7999999999999999954 4
Q ss_pred HHHHHH
Q psy13765 262 LVNYLS 267 (606)
Q Consensus 262 ~~~~f~ 267 (606)
+..++.
T Consensus 191 ~~~~~~ 196 (200)
T cd03217 191 LALEIE 196 (200)
T ss_pred HHhhhc
Confidence 555443
No 146
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.8e-39 Score=346.91 Aligned_cols=224 Identities=20% Similarity=0.333 Sum_probs=177.2
Q ss_pred EEEEeeEEEEecCCc----------------ccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcc
Q psy13765 29 IKFKDLTYTVSTGLG----------------FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG 92 (606)
Q Consensus 29 l~~~nl~~~~~~~~~----------------~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G 92 (606)
|+++||.+-+..+.. .+.+...+|+|+||+|++||+++|+||||||||||+++|+|+.++ .+|
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p-~~G 79 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV-SRG 79 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCc
Confidence 468888888754321 123556799999999999999999999999999999999999876 599
Q ss_pred EEEECCcc----C---Chh---hhc-ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhc
Q psy13765 93 QILTNGHS----R---NIN---AFR-RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN 161 (606)
Q Consensus 93 ~I~~~G~~----~---~~~---~~~-~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~ 161 (606)
+|.++|++ . +.. +++ +.++||+|++.++|.+|+.+.+.. ++. ..+++..+++ ..+.+++.
T Consensus 80 ~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~-~~~------~~g~~~~~~~--~~a~e~le 150 (382)
T TIGR03415 80 SVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAF-GLE------MQGMPEAERR--KRVDEQLE 150 (382)
T ss_pred EEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHH-HHH------hcCCCHHHHH--HHHHHHHH
Confidence 99999952 2 112 222 579999999999999998666543 211 0113333322 22333333
Q ss_pred CCccc-ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHH
Q psy13765 162 NPRVM-FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLF 239 (606)
Q Consensus 162 ~~~~~-~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~ 239 (606)
.-.+- ..|.+...+|||||||+.|||||+++|+||+|||||+|||+.++.++.+.|++++++ |+|||++|||++ ++.
T Consensus 151 ~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~ 229 (382)
T TIGR03415 151 LVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EAL 229 (382)
T ss_pred HcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH
Confidence 32331 457788889999999999999999999999999999999999999999999999875 999999999987 577
Q ss_pred hhcceeeeecCCcEEEEcChhHHH
Q psy13765 240 QMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 240 ~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
+++||+++|++|+++..|+++++.
T Consensus 230 ~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 230 KIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999998875
No 147
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.4e-39 Score=331.46 Aligned_cols=222 Identities=26% Similarity=0.405 Sum_probs=177.2
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CccEEEECCccCCh--
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG--VTGQILTNGHSRNI-- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~--~~G~I~~~G~~~~~-- 103 (606)
.|+++||+++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. .+|+|.++|++...
T Consensus 4 ~l~~~nl~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 4 IIRVEKLAKTFN--------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred EEEEeeEEEEeC--------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccc
Confidence 589999999873 357999999999999999999999999999999999998653 36999999976421
Q ss_pred ------hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccC--Cc-cccCChHHHHHHHHHHHHhcCCccc-ccCCCCC
Q psy13765 104 ------NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN--TR-SSQLSGGQKKRLSIALELINNPRVM-FLDEPTT 173 (606)
Q Consensus 104 ------~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~--~~-~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~ 173 (606)
...++.++|++|++.+++.+|+.+.+.. +...... .. ......-.++++ .+++..-++- ..|.+..
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~ 151 (262)
T PRK09984 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLI-GALGSTPFWRTCFSWFTREQKQRA---LQALTRVGMVHFAHQRVS 151 (262)
T ss_pred ccchhHHHHHhheEEEccccccccCCcHHHHHHh-hhcccccchhhhcccccHHHHHHH---HHHHHHcCCHHHHhCCcc
Confidence 2346679999999999999999776643 2211100 00 011111122333 3343333332 5688999
Q ss_pred CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
.+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|+
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQGH 230 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999864 899999999986 4678999999999999
Q ss_pred EEEEcChhHH
Q psy13765 253 CLYQGATDQL 262 (606)
Q Consensus 253 ~~~~G~~~~~ 262 (606)
+++.|+++++
T Consensus 231 i~~~g~~~~~ 240 (262)
T PRK09984 231 VFYDGSSQQF 240 (262)
T ss_pred EEEeCCHHHh
Confidence 9999998764
No 148
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-39 Score=329.48 Aligned_cols=220 Identities=24% Similarity=0.298 Sum_probs=174.6
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC-
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~- 102 (606)
.++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ +.+|+|.++|++..
T Consensus 4 ~l~i~~v~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~ 75 (258)
T PRK14241 4 RIDVKDLNIYYG--------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYG 75 (258)
T ss_pred cEEEeeEEEEEC--------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccc
Confidence 588999999873 35699999999999999999999999999999999999753 15899999997652
Q ss_pred ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCC-cc-cccCCCCCCC
Q psy13765 103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNP-RV-MFLDEPTTSN 175 (606)
Q Consensus 103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~-~~-~~~de~~~~~ 175 (606)
...+++.++|++|++.+++.+|+.+.+.... . ..+ ..+..+ ++++.-+...+.-. .+ -..+.+...+
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~-~-~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 149 (258)
T PRK14241 76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGL-K-LNG----VRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGL 149 (258)
T ss_pred cccChHHHhcceEEEccccccCCCCcHHHHHHHHH-H-hcC----CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccC
Confidence 2345678999999999999999977664311 1 000 012222 23333222222110 01 1457888999
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec------
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS------ 249 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~------ 249 (606)
|+||||||.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|+
T Consensus 150 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~ 227 (258)
T PRK14241 150 SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGK 227 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCC
Confidence 99999999999999999999999999999999999999999999964 689999999976 5778999999996
Q ss_pred CCcEEEEcChhHHH
Q psy13765 250 GGQCLYQGATDQLV 263 (606)
Q Consensus 250 ~G~~~~~G~~~~~~ 263 (606)
+|++++.|+++++.
T Consensus 228 ~g~i~~~~~~~~~~ 241 (258)
T PRK14241 228 PGRLVEIDDTEKIF 241 (258)
T ss_pred CceEEecCCHHHHH
Confidence 79999999998774
No 149
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.4e-39 Score=332.54 Aligned_cols=225 Identities=25% Similarity=0.377 Sum_probs=173.1
Q ss_pred EEEEEeeEEEEecCCcc-cccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765 28 EIKFKDLTYTVSTGLGF-KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--- 103 (606)
.|+++||+++|..+... +.+.+++|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-TSGELLIDDHPLHFGDY 82 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CCCEEEECCEECCCCch
Confidence 48999999998421000 01235799999999999999999999999999999999999876 59999999986532
Q ss_pred hhhcccEEEEccCCC--CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc--cccCCCCCCCCch
Q psy13765 104 NAFRRVSCYIQQDDR--LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV--MFLDEPTTSNPND 178 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~--l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~--~~~de~~~~~s~g 178 (606)
...++.++|++|++. +++.+|+.+.+... +. .+. .+..-+ .+++. +++..-++ ...+.+...+|+|
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~-~~--~~~---~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~~LS~G 153 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFP-LR--LNT---DLEPEQREKQII---ETLRQVGLLPDHASYYPHMLAPG 153 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHH-HH--hcc---CCCHHHHHHHHH---HHHHHcCCChHHHhcCchhcCHH
Confidence 233467999999975 56777876665431 00 000 111111 22332 22222222 1356677889999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ .+..+||++++|++|+++..|
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999875 899999999986 577889999999999999999
Q ss_pred ChhHHH
Q psy13765 258 ATDQLV 263 (606)
Q Consensus 258 ~~~~~~ 263 (606)
+++++.
T Consensus 233 ~~~~~~ 238 (267)
T PRK15112 233 STADVL 238 (267)
T ss_pred CHHHHh
Confidence 988764
No 150
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-39 Score=330.02 Aligned_cols=222 Identities=26% Similarity=0.346 Sum_probs=175.5
Q ss_pred CceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--C--CCccEEEECCcc
Q psy13765 25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--N--GVTGQILTNGHS 100 (606)
Q Consensus 25 ~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~--~~~G~I~~~G~~ 100 (606)
+...++++|++++|+ ++.+|+|+|++|++||+++|+||||||||||+++|+|+.+ + +.+|+|.++|++
T Consensus 10 ~~~~l~~~~l~~~~~--------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~ 81 (260)
T PRK10744 10 APSKIQVRNLNFYYG--------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGEN 81 (260)
T ss_pred CCceEEEEEEEEEeC--------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEE
Confidence 345699999999873 3469999999999999999999999999999999999975 2 258999999976
Q ss_pred CC-----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCC-cc-cccCCCC
Q psy13765 101 RN-----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNP-RV-MFLDEPT 172 (606)
Q Consensus 101 ~~-----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~-~~-~~~de~~ 172 (606)
.. ...+++.++|++|++.+++ .|+.+.+.. +.... +.++.-+ ++++.-+.+.+.-. .+ -.+|++.
T Consensus 82 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~-~~~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 154 (260)
T PRK10744 82 ILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAF-GVRLF-----EKLSRAEMDERVEWALTKAALWNEVKDKLHQSG 154 (260)
T ss_pred ccccccchHHHhcceEEEecCCccCc-CcHHHHHhh-hHhhc-----CCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCC
Confidence 52 2345678999999998887 687665542 11100 0122211 23443333333211 01 1367889
Q ss_pred CCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 173 ~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
..+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+++|++++|++|+
T Consensus 155 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~ 232 (260)
T PRK10744 155 YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGE 232 (260)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999964 789999999976 5678999999999999
Q ss_pred EEEEcChhHHH
Q psy13765 253 CLYQGATDQLV 263 (606)
Q Consensus 253 ~~~~G~~~~~~ 263 (606)
++..|+++++.
T Consensus 233 i~~~g~~~~~~ 243 (260)
T PRK10744 233 LIEFGNTDTIF 243 (260)
T ss_pred EEEeCCHHHHH
Confidence 99999988764
No 151
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-39 Score=324.16 Aligned_cols=215 Identities=24% Similarity=0.429 Sum_probs=172.5
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR 107 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~ 107 (606)
++++||+++|+ ++ ..|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... ...+
T Consensus 2 l~~~~l~~~~~--------~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~ 70 (232)
T PRK10771 2 LKLTDITWLYH--------HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP-ASGSLTLNGQDHTTTPPSR 70 (232)
T ss_pred eEEEEEEEEEC--------Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCeecCcCChhh
Confidence 68999999973 12 2389999999999999999999999999999999876 59999999986532 1234
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHHHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLSIA 186 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl~IA 186 (606)
+.++|++|++.+++.+|+.+.+.. +... +. ....-.++++. +++..-.+ -..|.+...+|+|||||+.||
T Consensus 71 ~~i~~~~q~~~~~~~~tv~e~l~~-~~~~--~~---~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 141 (232)
T PRK10771 71 RPVSMLFQENNLFSHLTVAQNIGL-GLNP--GL---KLNAAQREKLH---AIARQMGIEDLLARLPGQLSGGQRQRVALA 141 (232)
T ss_pred ccEEEEecccccccCCcHHHHHhc-cccc--cc---CCCHHHHHHHH---HHHHHcCcHHHHhCCcccCCHHHHHHHHHH
Confidence 679999999999999998776643 2211 00 01112233433 22322222 146888899999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
+|++.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|++++.|+++++.+
T Consensus 142 ral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 142 RCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999764 899999999987 5678999999999999999999887653
No 152
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-39 Score=330.58 Aligned_cols=223 Identities=26% Similarity=0.421 Sum_probs=174.5
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CC---CccEEEECCccC---
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-NG---VTGQILTNGHSR--- 101 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~-~~---~~G~I~~~G~~~--- 101 (606)
++++||+.++... .+..++++||||++++||++||+|.|||||||+.++|.|+++ ++ .+|+|.++|++.
T Consensus 2 L~v~nL~v~f~~~----~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 2 LEVKNLSVSFPTD----AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred ceEeeeEEEEecC----CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 6899999998653 234679999999999999999999999999999999999987 32 579999999853
Q ss_pred Chh---hhc-ccEEEEccCC--CCCCCCcHHHHH-HHcCCccccCCccccCChHHHHHHHHHHHHhcC---Ccc-cccCC
Q psy13765 102 NIN---AFR-RVSCYIQQDD--RLQPLLTIENVM-SLLGLDESQNTRSSQLSGGQKKRLSIALELINN---PRV-MFLDE 170 (606)
Q Consensus 102 ~~~---~~~-~~~~yv~Q~~--~l~~~ltv~~~l-~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~---~~~-~~~de 170 (606)
+.+ ++| +.|+++||++ .|.|.+|+.+-+ +.+-. |.. .+ ..++....|.+++.. |+- -+++.
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~-h~~------~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~ 149 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRL-HGK------GL-SKKEAKERAIELLELVGIPDPERRLKS 149 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHH-hhc------ch-hhHHHHHHHHHHHHHcCCCCHHHHHhh
Confidence 322 233 5799999996 578888874322 22211 100 10 122222333444433 322 25666
Q ss_pred CCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeec
Q psy13765 171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 171 ~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
-.-.+||||||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.|+|++|||+. .+.++||||++|.
T Consensus 150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY 228 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY 228 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE
Confidence 6777888888888899999999999999999999999999999999999987 5999999999987 5789999999999
Q ss_pred CCcEEEEcChhHHHH
Q psy13765 250 GGQCLYQGATDQLVN 264 (606)
Q Consensus 250 ~G~~~~~G~~~~~~~ 264 (606)
.|++++.|+++++..
T Consensus 229 aG~iVE~g~~~~i~~ 243 (316)
T COG0444 229 AGRIVEEGPVEEIFK 243 (316)
T ss_pred CcEEEEeCCHHHHhc
Confidence 999999999998754
No 153
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-39 Score=335.70 Aligned_cols=221 Identities=22% Similarity=0.350 Sum_probs=173.3
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---- 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---- 102 (606)
..|+++||+++|+.+. ...+.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|.+..
T Consensus 5 ~~l~i~nl~~~~~~~~---~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 5 KDIILDNVSYTYAKKT---PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS-ETGQTIVGDYAIPANLK 80 (289)
T ss_pred ceEEEEEEEEEeCCCC---ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEcccccc
Confidence 3589999999974210 0013599999999999999999999999999999999999876 5999999997642
Q ss_pred ----hhhhcccEEEEccCCC--CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc--cccCCCCC
Q psy13765 103 ----INAFRRVSCYIQQDDR--LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV--MFLDEPTT 173 (606)
Q Consensus 103 ----~~~~~~~~~yv~Q~~~--l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~--~~~de~~~ 173 (606)
...+++.++|++|++. +++ .|+.+.+.. +.. .. +.+.-+ ++++ ..++..-++ -..|.+..
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~-~~~---~~---~~~~~~~~~~~---~~ll~~~~L~~~~~~~~~~ 149 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAF-GPV---NL---GENKQEAYKKV---PELLKLVQLPEDYVKRSPF 149 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHH-HHH---Hc---CCCHHHHHHHH---HHHHHHcCCChhHhcCChh
Confidence 2345678999999973 333 477665542 111 00 112211 2233 233333233 14688899
Q ss_pred CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
.+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||++++|++|+
T Consensus 150 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~ 228 (289)
T PRK13645 150 ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGK 228 (289)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999764 899999999976 5778999999999999
Q ss_pred EEEEcChhHHH
Q psy13765 253 CLYQGATDQLV 263 (606)
Q Consensus 253 ~~~~G~~~~~~ 263 (606)
+++.|+++++.
T Consensus 229 i~~~g~~~~~~ 239 (289)
T PRK13645 229 VISIGSPFEIF 239 (289)
T ss_pred EEEeCCHHHHh
Confidence 99999988764
No 154
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-39 Score=332.43 Aligned_cols=220 Identities=23% Similarity=0.377 Sum_probs=175.1
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCC--ccEEEECCccCCh-
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGV--TGQILTNGHSRNI- 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~--~G~I~~~G~~~~~- 103 (606)
..|+++|+++.++. ..+++++|+|++|++||+++|+||||||||||+++|+|+.++.. +|+|.++|.+...
T Consensus 4 ~~l~i~~l~~~~~~------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~ 77 (282)
T PRK13640 4 NIVEFKHVSFTYPD------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK 77 (282)
T ss_pred ceEEEEEEEEEcCC------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC
Confidence 35899999998732 23469999999999999999999999999999999999987632 3999999987542
Q ss_pred --hhhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCch
Q psy13765 104 --NAFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPND 178 (606)
Q Consensus 104 --~~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g 178 (606)
...++.+||++|++. .++..|+.+.+.. +... .+.+.-+ ++++. +++..-++- .+|.+...+|+|
T Consensus 78 ~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~-~~~~------~~~~~~~~~~~~~---~~l~~~~L~~~~~~~~~~LS~G 147 (282)
T PRK13640 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAF-GLEN------RAVPRPEMIKIVR---DVLADVGMLDYIDSEPANLSGG 147 (282)
T ss_pred CHHHHHhheEEEEECHHHhhccCCHHHHHHh-hHHh------CCCCHHHHHHHHH---HHHHHCCChhHhcCCcccCCHH
Confidence 345678999999974 5667888776642 2111 0122222 22332 223222222 468888999999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++. + ..||++++|++|++++.|
T Consensus 148 ~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g 225 (282)
T PRK13640 148 QKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQG 225 (282)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999875 9999999999874 5 579999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++..
T Consensus 226 ~~~~~~~ 232 (282)
T PRK13640 226 SPVEIFS 232 (282)
T ss_pred CHHHHhc
Confidence 9988753
No 155
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-39 Score=332.06 Aligned_cols=221 Identities=21% Similarity=0.358 Sum_probs=175.1
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-------CccEEEECCccC
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG-------VTGQILTNGHSR 101 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~-------~~G~I~~~G~~~ 101 (606)
|+++|+++++ +++.+|+|+|++|++||+++|+||||||||||+|+|+|+.++. .+|+|.++|.+.
T Consensus 2 l~~~nl~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 2 LTADHLHVAR--------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred eEEEEEEEEE--------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEc
Confidence 7899999987 2357999999999999999999999999999999999998763 289999999865
Q ss_pred C---hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCc
Q psy13765 102 N---INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPN 177 (606)
Q Consensus 102 ~---~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~ 177 (606)
. ...+++.++|++|++.+++.+|+.+.+........ ...+..+.-.++++. +++..-.+- .+|.+...||+
T Consensus 74 ~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LSg 148 (272)
T PRK13547 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHA--RRAGALTHRDGEIAW---QALALAGATALVGRDVTTLSG 148 (272)
T ss_pred ccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccc--cccccCCHHHHHHHH---HHHHHcCcHhhhcCCcccCCH
Confidence 3 23456678999999876666888776644221110 001112211223332 222222222 46889999999
Q ss_pred hhhhHHHHHHhhh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeee
Q psy13765 178 DQKKRLSIALELI---------NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYL 247 (606)
Q Consensus 178 g~~krl~IA~aL~---------~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~ 247 (606)
|||||+.||+||+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~ 227 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEE
Confidence 9999999999999 599999999999999999999999999999876 899999999986 57789999999
Q ss_pred ecCCcEEEEcChhHHH
Q psy13765 248 LSGGQCLYQGATDQLV 263 (606)
Q Consensus 248 L~~G~~~~~G~~~~~~ 263 (606)
|++|++++.|+++++.
T Consensus 228 l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 228 LADGAIVAHGAPADVL 243 (272)
T ss_pred EECCeEEEecCHHHHc
Confidence 9999999999987763
No 156
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-39 Score=315.41 Aligned_cols=188 Identities=42% Similarity=0.753 Sum_probs=156.2
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCccEEEECCccCChhhh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-NGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~-~~~~G~I~~~G~~~~~~~~ 106 (606)
.|+++|+++.|+.+ .+++++|+|+|+++++||+++|+||||||||||+++|+|+.. +..+|+|.++|++.. ..+
T Consensus 3 ~l~~~~l~~~~~~~----~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~ 77 (192)
T cd03232 3 VLTWKNLNYTVPVK----GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNF 77 (192)
T ss_pred EEEEeeeEEEecCC----CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHh
Confidence 47899999998421 112569999999999999999999999999999999999853 236999999998765 456
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA 186 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA 186 (606)
++.++|++|++.+++.+|+.+.+..... ..+||||||||+++|++|+.+
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~-------~~~LSgGe~qrv~la~al~~~------------------------ 126 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSAL-------LRGLSVEQRKRLTIGVELAAK------------------------ 126 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHH-------HhcCCHHHhHHHHHHHHHhcC------------------------
Confidence 6789999999999999999777653110 016777777777755555555
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC-CcEEEEc
Q psy13765 187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG-GQCLYQG 257 (606)
Q Consensus 187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~~~~~G 257 (606)
|++++|||||+|||+.++..+.+.|++++++|+|||++||+++..+.+.||++++|++ |++++.|
T Consensus 127 ------p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 127 ------PSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred ------CcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999877999999999987446789999999998 9999865
No 157
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-39 Score=310.41 Aligned_cols=171 Identities=29% Similarity=0.536 Sum_probs=149.4
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--hhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--NAF 106 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--~~~ 106 (606)
++++|++++++ .+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.+||++... ..+
T Consensus 1 l~~~~l~~~~~--------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~ 71 (173)
T cd03230 1 IEVRNLSKRYG--------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKDIKKEPEEV 71 (173)
T ss_pred CEEEEEEEEEC--------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcccchHhh
Confidence 46899999873 24699999999999999999999999999999999999876 59999999986532 345
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA 186 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA 186 (606)
++.++|++|++.+++..|+.+.+. ||||||||++||++|+.+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~~~--------------LS~G~~qrv~laral~~~------------------------ 113 (173)
T cd03230 72 KRRIGYLPEEPSLYENLTVRENLK--------------LSGGMKQRLALAQALLHD------------------------ 113 (173)
T ss_pred hccEEEEecCCccccCCcHHHHhh--------------cCHHHHHHHHHHHHHHcC------------------------
Confidence 678999999999999889877653 888888888866666666
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++. .+.+.+|++++|++|++
T Consensus 114 ------p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 114 ------PELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred ------CCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999999888999999999976 57779999999999874
No 158
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-39 Score=326.67 Aligned_cols=220 Identities=22% Similarity=0.285 Sum_probs=173.5
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCccEEEECCccCC---
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTNGHSRN--- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~~~G~I~~~G~~~~--- 102 (606)
.++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ +.+|+|.++|++..
T Consensus 2 ~~~~~~l~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~ 73 (246)
T PRK14269 2 IAKTTNLNLFYG--------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73 (246)
T ss_pred ceeeeeeEEEEC--------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCC
Confidence 578999999973 35799999999999999999999999999999999998642 36899999998653
Q ss_pred hhhhcccEEEEccCCCCCCCCcHHHHHHHc-CCccccCCccccCChHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCchh
Q psy13765 103 INAFRRVSCYIQQDDRLQPLLTIENVMSLL-GLDESQNTRSSQLSGGQKKRLSIALELINN-PRV-MFLDEPTTSNPNDQ 179 (606)
Q Consensus 103 ~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~-~~~-~~~de~~~~~s~g~ 179 (606)
...+++.++|++|++.+++ .|+.+.+... .+....+ -....+.++.-+.+.+.- +.+ -..|++...+|+||
T Consensus 74 ~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 147 (246)
T PRK14269 74 VVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-----NKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQ 147 (246)
T ss_pred HHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-----ChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHH
Confidence 2355678999999998887 5886655431 1110000 001123333322222221 111 14678889999999
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
|||+.|||||+++|++++|||||+|||+.++..+.+.|+++++ |+|+|++||+++ .+.+.+|++++|++|++++.|++
T Consensus 148 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 225 (246)
T PRK14269 148 QQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGES 225 (246)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999865 899999999976 47789999999999999999998
Q ss_pred hHHH
Q psy13765 260 DQLV 263 (606)
Q Consensus 260 ~~~~ 263 (606)
+++.
T Consensus 226 ~~~~ 229 (246)
T PRK14269 226 KEFF 229 (246)
T ss_pred HHHH
Confidence 8764
No 159
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=5e-39 Score=327.72 Aligned_cols=217 Identities=23% Similarity=0.332 Sum_probs=170.4
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CccEEEECCccCChh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG---VTGQILTNGHSRNIN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~---~~G~I~~~G~~~~~~ 104 (606)
.|+++||++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. .+|+|.++|++.+..
T Consensus 4 ~l~~~~l~~~~---------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~ 74 (254)
T PRK10418 4 QIELRNIALQA---------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC 74 (254)
T ss_pred EEEEeCeEEEe---------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc
Confidence 68999999986 146999999999999999999999999999999999997651 589999999876433
Q ss_pred hh-cccEEEEccCCC--CCCCCcHHHHHHH-cCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchh
Q psy13765 105 AF-RRVSCYIQQDDR--LQPLLTIENVMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQ 179 (606)
Q Consensus 105 ~~-~~~~~yv~Q~~~--l~~~ltv~~~l~~-~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~ 179 (606)
.. ++.++||+|++. +.+..|+.+.+.. +... + ... +.+++.-+.+.+.-.+. -++|++...+|+||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq 145 (254)
T PRK10418 75 ALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---G-----KPA-DDATLTAALEAVGLENAARVLKLYPFEMSGGM 145 (254)
T ss_pred ccccceEEEEecCCccccCccccHHHHHHHHHHHc---C-----CCh-HHHHHHHHHHHcCCCChhhhhhcCCcccCHHH
Confidence 33 357999999974 4556676544322 1100 0 011 12333222222221111 14678889999999
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
|||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.+.||++++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~ 224 (254)
T PRK10418 146 LQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGD 224 (254)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999764 899999999977 4668999999999999999999
Q ss_pred hhHHH
Q psy13765 259 TDQLV 263 (606)
Q Consensus 259 ~~~~~ 263 (606)
++++.
T Consensus 225 ~~~~~ 229 (254)
T PRK10418 225 VETLF 229 (254)
T ss_pred HHHHh
Confidence 88764
No 160
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-39 Score=323.97 Aligned_cols=216 Identities=24% Similarity=0.405 Sum_probs=170.5
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR 107 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~ 107 (606)
|+++|++++++ .+.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++... ...+
T Consensus 1 l~~~~l~~~~~--------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~-~~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03300 1 IELENVSKFYG--------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP-TSGEILLDGKDITNLPPHK 71 (232)
T ss_pred CEEEeEEEEeC--------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcCcCChhh
Confidence 46899999873 35799999999999999999999999999999999999876 58999999986532 2235
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA 186 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA 186 (606)
+.++|++|++.+++.+|+.+.+... .. .. ..+. -.++++.-+.+.+.-. -.++.....+|+|||||+.||
T Consensus 72 ~~i~~~~q~~~~~~~~t~~~nl~~~-~~---~~---~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrl~la 142 (232)
T cd03300 72 RPVNTVFQNYALFPHLTVFENIAFG-LR---LK---KLPKAEIKERVAEALDLVQLE--GYANRKPSQLSGGQQQRVAIA 142 (232)
T ss_pred cceEEEecccccCCCCcHHHHHHHH-HH---hc---CCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHH
Confidence 6799999999999888986655421 10 00 0111 1122332222222111 135667778888888888999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+.+++.
T Consensus 143 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 143 RALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999999999999999875 899999999976 577899999999999999999887664
No 161
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-39 Score=326.92 Aligned_cols=220 Identities=24% Similarity=0.346 Sum_probs=174.2
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--C--CCccEEEECCccCC-
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--N--GVTGQILTNGHSRN- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~--~~~G~I~~~G~~~~- 102 (606)
.|+++|++++|+ ++.+|+|+|++|++||+++|+||||||||||+++|+|+.+ + +.+|+|.++|++..
T Consensus 4 ~l~~~nl~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 75 (252)
T PRK14256 4 KVKLEQLNVHFG--------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75 (252)
T ss_pred EEEEEEEEEEeC--------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccc
Confidence 489999999873 3569999999999999999999999999999999999975 3 14899999998653
Q ss_pred ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCc-c-cccCCCCCCC
Q psy13765 103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPR-V-MFLDEPTTSN 175 (606)
Q Consensus 103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~-~-~~~de~~~~~ 175 (606)
...+++.++|++|++.+++.+|+.+.+.. +.... +..+..+ ++++.-+...+.-.+ + -.+|.+...+
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~-~~~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 149 (252)
T PRK14256 76 RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIA-GYKLN-----GRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMEL 149 (252)
T ss_pred ccCChHHhhccEEEEecCCCCCCcCcHHHHHHh-HHHhc-----CCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcC
Confidence 23457789999999999998998766542 11110 0011111 233322222221100 0 1357788999
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.++||++++|++|+++.
T Consensus 150 S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14256 150 SGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVE 227 (252)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999976 689999999976 5678999999999999999
Q ss_pred EcChhHHH
Q psy13765 256 QGATDQLV 263 (606)
Q Consensus 256 ~G~~~~~~ 263 (606)
.|+++++.
T Consensus 228 ~~~~~~~~ 235 (252)
T PRK14256 228 CGETKKIF 235 (252)
T ss_pred eCCHHHHH
Confidence 99988764
No 162
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-39 Score=330.43 Aligned_cols=221 Identities=23% Similarity=0.311 Sum_probs=174.1
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccC
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSR 101 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~ 101 (606)
...|+++||+++|+ ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ +.+|+|.++|++.
T Consensus 11 ~~~l~i~nl~~~~~--------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i 82 (269)
T PRK14259 11 NIIISLQNVTISYG--------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDL 82 (269)
T ss_pred CceEEEEeEEEEEC--------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 45799999999873 35699999999999999999999999999999999998752 3589999999864
Q ss_pred C-----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCC-cc-cccCCCCCC
Q psy13765 102 N-----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP-RV-MFLDEPTTS 174 (606)
Q Consensus 102 ~-----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~-~~-~~~de~~~~ 174 (606)
. ...+++.++|++|++.+++. |+.+.+... ... . ....-.++++.-+.+.+.-. .+ -.+|.+...
T Consensus 83 ~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~-~~~--~----~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 154 (269)
T PRK14259 83 YDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFG-ARI--N----GYTGDMDELVERSLRKAAVWDECKDKLNESGYS 154 (269)
T ss_pred ccccCCHHHHhhceEEEccCCccchh-hHHHHHhhh-hhh--c----CCcHHHHHHHHHHHHHhCCcchhhhhhCCCccc
Confidence 2 23456789999999998884 887766432 110 0 01111122322112222110 00 146888999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC----
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG---- 250 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~---- 250 (606)
+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.++|+++++ ++|||++||++. .+.++||++++|++
T Consensus 155 LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~ 232 (269)
T PRK14259 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVE 232 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccccc
Confidence 999999999999999999999999999999999999999999999965 799999999986 57799999999986
Q ss_pred -------CcEEEEcChhHHHH
Q psy13765 251 -------GQCLYQGATDQLVN 264 (606)
Q Consensus 251 -------G~~~~~G~~~~~~~ 264 (606)
|++++.|+++++..
T Consensus 233 ~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 233 GGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred cccccccceEEEeCCHHHHHh
Confidence 67899999988754
No 163
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-39 Score=329.18 Aligned_cols=221 Identities=23% Similarity=0.325 Sum_probs=175.0
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~ 102 (606)
..|+++||++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ +.+|+|.++|++..
T Consensus 18 ~~l~~~nl~~~~~--------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 18 IKMRARDVSVFYG--------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred ceEEEEeEEEEEC--------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 4799999999873 35699999999999999999999999999999999999764 25899999998653
Q ss_pred -----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCcc--cccCCCCCC
Q psy13765 103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRV--MFLDEPTTS 174 (606)
Q Consensus 103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~--~~~de~~~~ 174 (606)
...+++.++|++|++.+++. |+.+.+.. +.. ..+. ..+.. .++++.-+.+.+.-.+. -.+|++...
T Consensus 90 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~-~~~-~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 163 (267)
T PRK14235 90 DPRLDVVELRARVGMVFQKPNPFPK-SIYENVAY-GPR-IHGL---ARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTG 163 (267)
T ss_pred ccccchHHHhhceEEEecCCCCCCC-cHHHHHHH-HHH-hccc---ccchHHHHHHHHHHHHHcCCchhhhHHhhCCccc
Confidence 23456789999999988875 88665542 211 0000 00111 13333323333222111 145788999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.||++++|++|+++
T Consensus 164 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~ 241 (267)
T PRK14235 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLV 241 (267)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999976 789999999977 577899999999999999
Q ss_pred EEcChhHHH
Q psy13765 255 YQGATDQLV 263 (606)
Q Consensus 255 ~~G~~~~~~ 263 (606)
..|+++++.
T Consensus 242 ~~g~~~~~~ 250 (267)
T PRK14235 242 EVGDTEKMF 250 (267)
T ss_pred EeCCHHHHH
Confidence 999988764
No 164
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=4.1e-39 Score=324.74 Aligned_cols=217 Identities=25% Similarity=0.432 Sum_probs=169.3
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA 105 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~ 105 (606)
++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ...
T Consensus 1 i~~~~l~~~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKP------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP-ENGRVLVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEecCC------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCeehHhcCHHH
Confidence 468999998732 235699999999999999999999999999999999999876 5999999997642 234
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHH--HHHHhcC-C-cc-cccCCCCCCCCchhh
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSI--ALELINN-P-RV-MFLDEPTTSNPNDQK 180 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~i--a~~L~~~-~-~~-~~~de~~~~~s~g~~ 180 (606)
+++.++|++|++.+++ .|+.+.+... ... . . .......... +.+++.. | .+ -.++.+...||+|||
T Consensus 74 ~~~~i~~~~q~~~~~~-~tv~~nl~~~-~~~---~---~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~ 144 (237)
T cd03252 74 LRRQVGVVLQENVLFN-RSIRDNIALA-DPG---M---S-MERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQR 144 (237)
T ss_pred HhhcEEEEcCCchhcc-chHHHHhhcc-CCC---C---C-HHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHH
Confidence 5678999999998775 5887766431 110 0 0 0010111110 1122211 1 01 135778899999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
|||.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|+++. + ..||++++|++|++++.|+++
T Consensus 145 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~~~~~ 221 (237)
T cd03252 145 QRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIVEQGSHD 221 (237)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999974 8999999999874 5 569999999999999999988
Q ss_pred HHHH
Q psy13765 261 QLVN 264 (606)
Q Consensus 261 ~~~~ 264 (606)
++.+
T Consensus 222 ~~~~ 225 (237)
T cd03252 222 ELLA 225 (237)
T ss_pred HHHh
Confidence 7654
No 165
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=4.1e-39 Score=343.43 Aligned_cols=208 Identities=22% Similarity=0.386 Sum_probs=169.9
Q ss_pred eeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-------hh
Q psy13765 33 DLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-------NA 105 (606)
Q Consensus 33 nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-------~~ 105 (606)
||+++|. ++. + |+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++... ..
T Consensus 4 ~l~~~~~--------~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p-~~G~I~~~g~~i~~~~~~~~~~~ 72 (354)
T TIGR02142 4 RFSKRLG--------DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP-DEGEIVLNGRTLFDSRKGIFLPP 72 (354)
T ss_pred EEEEEEC--------CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECccCccccccch
Confidence 7777762 233 4 99999999999999999999999999999999876 59999999986531 23
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl 183 (606)
.++.++|++|++.+++.+|+.+.+.. ++.. .+.. .++|+. +++..-.+- .+|.+...||||||||+
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~enl~~-~~~~--------~~~~~~~~~~~---~~l~~~gL~~~~~~~~~~LSgGqkqRv 140 (354)
T TIGR02142 73 EKRRIGYVFQEARLFPHLSVRGNLRY-GMKR--------ARPSERRISFE---RVIELLGIGHLLGRLPGRLSGGEKQRV 140 (354)
T ss_pred hhCCeEEEecCCccCCCCcHHHHHHH-Hhhc--------cChhHHHHHHH---HHHHHcCChhHhcCChhhCCHHHHHHH
Confidence 46789999999999999999776643 2211 0111 233333 333332332 56888899999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++..++|++++|++|+++..|+++++
T Consensus 141 alAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 141 AIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999876 899999999987 57789999999999999999999887
Q ss_pred HH
Q psy13765 263 VN 264 (606)
Q Consensus 263 ~~ 264 (606)
..
T Consensus 220 ~~ 221 (354)
T TIGR02142 220 WA 221 (354)
T ss_pred hc
Confidence 53
No 166
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=4.7e-39 Score=324.66 Aligned_cols=215 Identities=24% Similarity=0.402 Sum_probs=175.0
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR 107 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~ 107 (606)
++++|++++|+ .+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... ...+
T Consensus 1 i~i~~l~~~~~--------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~i~g~~~~~~~~~~ 71 (237)
T TIGR00968 1 IEIANISKRFG--------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP-DSGRIRLNGQDATRVHARD 71 (237)
T ss_pred CEEEEEEEEEC--------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcCcCChhh
Confidence 46899999873 35799999999999999999999999999999999999876 59999999986532 2335
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl~I 185 (606)
+.++|++|++.+++..|+.+.+.. +.. .. ..+.- .++++ .+++..-++ -..|.+...+|+||+||+.|
T Consensus 72 ~~i~~~~q~~~~~~~~t~~enl~~-~~~---~~---~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~lS~G~~qrl~l 141 (237)
T TIGR00968 72 RKIGFVFQHYALFKHLTVRDNIAF-GLE---IR---KHPKAKIKARV---EELLELVQLEGLGDRYPNQLSGGQRQRVAL 141 (237)
T ss_pred cCEEEEecChhhccCCcHHHHHHh-HHH---hc---CCCHHHHHHHH---HHHHHHcCCHhHhhCChhhCCHHHHHHHHH
Confidence 679999999999998898776643 211 00 11221 12222 223332233 25678889999999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
|++|+++|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|++++.|+.+++.
T Consensus 142 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 142 ARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999876 899999999986 577899999999999999999988774
No 167
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-39 Score=327.74 Aligned_cols=220 Identities=24% Similarity=0.314 Sum_probs=174.3
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CC--CccEEEECCccCC
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--NG--VTGQILTNGHSRN 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~~--~~G~I~~~G~~~~ 102 (606)
..|+++|+++.|+ ++.+|+|+|++|++||+++|+||||||||||+++|+|+.+ +. .+|+|.++|++..
T Consensus 11 ~~l~i~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 11 EVYQINGMNLWYG--------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82 (259)
T ss_pred ceEEEeeEEEEEC--------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence 3699999999873 3569999999999999999999999999999999999875 22 4899999998653
Q ss_pred -----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcC-Ccc-cccCCCCCC
Q psy13765 103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINN-PRV-MFLDEPTTS 174 (606)
Q Consensus 103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~-~~~-~~~de~~~~ 174 (606)
....++.++|++|++.+++. |+.+.+.. +... . +..+..+ ++++.-+.+.+.- +.+ -.++.+...
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~-~~~~-~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~ 155 (259)
T PRK14274 83 KGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAY-GPRI-H----GTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALS 155 (259)
T ss_pred ccccCHHHHhhceEEEecCCccccc-CHHHHHHh-HHHh-c----CCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCccc
Confidence 23456789999999988885 87665542 1110 0 0012112 2333222222211 111 246889999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
+|+|||||+.||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|+++|+++ .+.+.||++++|++|+++
T Consensus 156 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~ 233 (259)
T PRK14274 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELV 233 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999965 799999999986 577899999999999999
Q ss_pred EEcChhHHH
Q psy13765 255 YQGATDQLV 263 (606)
Q Consensus 255 ~~G~~~~~~ 263 (606)
..|+++++.
T Consensus 234 ~~g~~~~~~ 242 (259)
T PRK14274 234 ECNDTNKMF 242 (259)
T ss_pred EECCHHHHh
Confidence 999998864
No 168
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=6.8e-39 Score=327.44 Aligned_cols=216 Identities=21% Similarity=0.358 Sum_probs=170.6
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc-----CC
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-----RN 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~-----~~ 102 (606)
.|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++ ..
T Consensus 6 ~l~~~~l~~~~~--------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~i~ 76 (258)
T PRK11701 6 LLSVRGLTKLYG--------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP-DAGEVHYRMRDGQLRDLY 76 (258)
T ss_pred eEEEeeeEEEcC--------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCccccccccc
Confidence 589999999873 35699999999999999999999999999999999999876 59999999986 32
Q ss_pred ---hhh----hcccEEEEccCCC--CCCCCcHHHHH-HHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc--cccC
Q psy13765 103 ---INA----FRRVSCYIQQDDR--LQPLLTIENVM-SLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV--MFLD 169 (606)
Q Consensus 103 ---~~~----~~~~~~yv~Q~~~--l~~~ltv~~~l-~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~--~~~d 169 (606)
... .++.++|++|++. +++.+|+.+.+ ..+...... .-++ ++++ .+++..-++ -.+|
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~---~~~l~~~~l~~~~~~ 146 (258)
T PRK11701 77 ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGAR-------HYGDIRATA---GDWLERVEIDAARID 146 (258)
T ss_pred cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccC-------cHHHHHHHH---HHHHHHcCCChhHHh
Confidence 111 2456999999974 56666765333 211100000 1112 2222 233333233 1467
Q ss_pred CCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeee
Q psy13765 170 EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLL 248 (606)
Q Consensus 170 e~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L 248 (606)
++...+|+|||||+.|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.+.||++++|
T Consensus 147 ~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l 225 (258)
T PRK11701 147 DLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVM 225 (258)
T ss_pred CCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEE
Confidence 889999999999999999999999999999999999999999999999999775 899999999976 466789999999
Q ss_pred cCCcEEEEcChhHHH
Q psy13765 249 SGGQCLYQGATDQLV 263 (606)
Q Consensus 249 ~~G~~~~~G~~~~~~ 263 (606)
++|++++.|+++++.
T Consensus 226 ~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 226 KQGRVVESGLTDQVL 240 (258)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
No 169
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.2e-39 Score=301.63 Aligned_cols=191 Identities=31% Similarity=0.489 Sum_probs=160.5
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---- 103 (606)
.|+++++++++..+ .++..||++|++.|++||.+||+|||||||||||-+++|+..+ .+|+|.+.|++...
T Consensus 6 ii~~~~l~ktvg~~----~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~-ssGeV~l~G~~L~~ldEd 80 (228)
T COG4181 6 IIEVHHLSKTVGQG----EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP-SSGEVRLLGQPLHKLDED 80 (228)
T ss_pred eeehhhhhhhhcCC----CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC-CCceEEEcCcchhhcCHH
Confidence 68899999998654 3567899999999999999999999999999999999999876 59999999986431
Q ss_pred --hhhc-ccEEEEccCCCCCCCCcH----------------------HHHHHHcCCccccCCccccCChHHHHHHHHHHH
Q psy13765 104 --NAFR-RVSCYIQQDDRLQPLLTI----------------------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE 158 (606)
Q Consensus 104 --~~~~-~~~~yv~Q~~~l~~~ltv----------------------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~ 158 (606)
..+| +.+|+|||...+.|++|. .+.++.+||.+..+.++++|||||+|||+||||
T Consensus 81 ~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARA 160 (228)
T COG4181 81 ARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHH
Confidence 2343 679999999999999985 344566677776666777777777777765555
Q ss_pred HhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchH
Q psy13765 159 LINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSAT 237 (606)
Q Consensus 159 L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~ 237 (606)
+. ..|+|||.||||-+||..+..+|.++|-.+.++ |.|.|++||||.
T Consensus 161 fa------------------------------~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~-- 208 (228)
T COG4181 161 FA------------------------------GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ-- 208 (228)
T ss_pred hc------------------------------CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--
Confidence 55 449999999999999999999999999999764 999999999976
Q ss_pred HHhhcceeeeecCCcEEE
Q psy13765 238 LFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 238 i~~~~D~v~~L~~G~~~~ 255 (606)
+...|||.+-|.+|+++.
T Consensus 209 LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 209 LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHhhhheeeeecceecc
Confidence 567899999999999874
No 170
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=5e-39 Score=319.17 Aligned_cols=209 Identities=24% Similarity=0.399 Sum_probs=167.7
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR 107 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~ 107 (606)
++++||++.++ ..++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... ...+
T Consensus 1 ~~~~~l~~~~~----------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~ 69 (213)
T TIGR01277 1 LALDKVRYEYE----------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP-ASGSIKVNDQSHTGLAPYQ 69 (213)
T ss_pred CeEEeeeEEeC----------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEcccCChhc
Confidence 46899999862 246899999999999999999999999999999999876 59999999986532 2356
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHHHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLSIA 186 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl~IA 186 (606)
+.++||+|++.+++.+|+.+.+... ...... ...-.++++.-+.+.+ ++ -..|.+...+|+|||||+.||
T Consensus 70 ~~i~~v~q~~~~~~~~t~~en~~~~-~~~~~~-----~~~~~~~~~~~~l~~~---~l~~~~~~~~~~LS~G~~qrl~la 140 (213)
T TIGR01277 70 RPVSMLFQENNLFAHLTVRQNIGLG-LHPGLK-----LNAEQQEKVVDAAQQV---GIADYLDRLPEQLSGGQRQRVALA 140 (213)
T ss_pred cceEEEeccCccCCCCcHHHHHHhH-hhccCC-----ccHHHHHHHHHHHHHc---CcHHHhhCCcccCCHHHHHHHHHH
Confidence 7799999999999988986655421 111000 0011234443222222 22 146888899999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
+||+.+|++++|||||+|||+.++..+.++|++++++ |.|||+++|++. .+.+.||++++|++|+++..|+
T Consensus 141 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 141 RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999999875 899999999976 5678999999999999998875
No 171
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-39 Score=325.80 Aligned_cols=218 Identities=23% Similarity=0.319 Sum_probs=172.4
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CC--CccEEEECCccCC-
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--NG--VTGQILTNGHSRN- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~~--~~G~I~~~G~~~~- 102 (606)
.++++||+++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +. .+|+|.++|++..
T Consensus 5 ~l~~~~l~~~~~--------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 5 ILQVSDLSVYYN--------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred eEEEEeeEEEEC--------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcC
Confidence 589999999873 3569999999999999999999999999999999999843 32 4899999998652
Q ss_pred ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCC-hH-HHHHHHHHHHHhcC-Ccc-cccCCCCCC
Q psy13765 103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLS-GG-QKKRLSIALELINN-PRV-MFLDEPTTS 174 (606)
Q Consensus 103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lS-gG-qrqRv~ia~~L~~~-~~~-~~~de~~~~ 174 (606)
...+++.++||+|++.+++ .|+.+.+... ... .+.. .. .++++.-+.+.+.- +.+ -.+|.+...
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~-~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 148 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG-LRL------KGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALG 148 (252)
T ss_pred cccchHhhhhcEEEEecCCccCc-CcHHHHHHHH-HHH------cCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCccc
Confidence 1245678999999998887 7886655431 110 0111 11 22333322222211 111 146788999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.++|+++++ ++|||++||+++ .+.+.||++++|++|+++
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14239 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLI 226 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999965 689999999976 577899999999999999
Q ss_pred EEcChhHHH
Q psy13765 255 YQGATDQLV 263 (606)
Q Consensus 255 ~~G~~~~~~ 263 (606)
+.|+++++.
T Consensus 227 ~~g~~~~~~ 235 (252)
T PRK14239 227 EYNDTKQMF 235 (252)
T ss_pred EeCCHHHHH
Confidence 999998874
No 172
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-39 Score=328.93 Aligned_cols=220 Identities=23% Similarity=0.302 Sum_probs=172.0
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--C--CCccEEEECCccCC
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--N--GVTGQILTNGHSRN 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~--~~~G~I~~~G~~~~ 102 (606)
..++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ + +.+|+|.++|++..
T Consensus 20 ~~l~~~~l~~~~~--------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 20 HILEVKDLSIYYG--------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred ceEEEEEEEEEeC--------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 4689999999873 3579999999999999999999999999999999999753 1 25899999998653
Q ss_pred h-----hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhc-CCcc-cccCCCCCC
Q psy13765 103 I-----NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELIN-NPRV-MFLDEPTTS 174 (606)
Q Consensus 103 ~-----~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~-~~~~-~~~de~~~~ 174 (606)
. ..+++.++|++|++.+++. |+.+.+.. ++... . ..... .++++.-+..... ...+ -.+|.+...
T Consensus 92 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~-~~~~~-~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 164 (268)
T PRK14248 92 DSNINVVNLRREIGMVFQKPNPFPK-SIYNNITH-ALKYA-G----ERRKSVLDEIVEESLTKAALWDEVKDRLHSSALS 164 (268)
T ss_pred cccccHHHHhccEEEEecCCccCcc-cHHHHHHH-HHHhc-C----CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCccc
Confidence 1 2456789999999988885 77655432 11100 0 00111 1233322222111 1111 145788999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.++||++++|++|+++
T Consensus 165 LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~ 242 (268)
T PRK14248 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLV 242 (268)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999965 689999999976 477899999999999999
Q ss_pred EEcChhHHH
Q psy13765 255 YQGATDQLV 263 (606)
Q Consensus 255 ~~G~~~~~~ 263 (606)
+.|+++++.
T Consensus 243 ~~~~~~~~~ 251 (268)
T PRK14248 243 EYDQTEQIF 251 (268)
T ss_pred EeCCHHHHH
Confidence 999988764
No 173
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-39 Score=330.26 Aligned_cols=219 Identities=19% Similarity=0.326 Sum_probs=175.1
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~ 104 (606)
.|+++||+++|+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.. ..
T Consensus 4 ~l~~~~l~~~~~~~-----~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~i~~~~~~ 77 (277)
T PRK13642 4 ILEVENLVFKYEKE-----SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE-FEGKVKIDGELLTAENVW 77 (277)
T ss_pred eEEEEEEEEEcCCC-----CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCCEEEECCEECCcCCHH
Confidence 58999999997421 224599999999999999999999999999999999999876 5999999998653 23
Q ss_pred hhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhH
Q psy13765 105 AFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKR 182 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~kr 182 (606)
..++.++|++|++. .++..|+.+.+.. +... ...+.-+ ++++.-+.+.+.-. -..+.++..+|+|||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~-~~~~------~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qr 148 (277)
T PRK13642 78 NLRRKIGMVFQNPDNQFVGATVEDDVAF-GMEN------QGIPREEMIKRVDEALLAVNML--DFKTREPARLSGGQKQR 148 (277)
T ss_pred HHhcceEEEEECHHHhhccCCHHHHHHh-hHHH------cCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHH
Confidence 45778999999974 5666788666643 1111 0111111 23443333332211 14678899999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~ 261 (606)
+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..+|++++|++|+++..|++++
T Consensus 149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 9999999999875 5 4699999999999999999988
Q ss_pred HH
Q psy13765 262 LV 263 (606)
Q Consensus 262 ~~ 263 (606)
+.
T Consensus 227 ~~ 228 (277)
T PRK13642 227 LF 228 (277)
T ss_pred Hh
Confidence 65
No 174
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-39 Score=325.33 Aligned_cols=220 Identities=23% Similarity=0.294 Sum_probs=174.0
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~ 102 (606)
+.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ +.+|+|.++|.+..
T Consensus 3 ~~l~~~~l~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 3 IKMESKNLNLWYG--------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred cEEEEEEeEEEEC--------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecc
Confidence 4688999999873 35699999999999999999999999999999999998753 25899999998653
Q ss_pred h-----hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCC-cc-cccCCCCCC
Q psy13765 103 I-----NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNP-RV-MFLDEPTTS 174 (606)
Q Consensus 103 ~-----~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~-~~-~~~de~~~~ 174 (606)
. ...++.++|++|++.+++ .|+.+.+.. +... ... ....+ ++++.-+.+.+.-. .+ -..+.+...
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~-~~~~---~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 147 (251)
T PRK14270 75 DKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAY-GPRI---HGI--KDKKELDKIVEWALKKAALWDEVKDDLKKSALK 147 (251)
T ss_pred cccccHHHHHhheEEEecCCCcCC-CcHHHHHHh-HHHh---cCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCCccc
Confidence 1 244677999999999887 788766542 1110 000 01112 23332222222110 01 146788999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
+|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|+++
T Consensus 148 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~ 225 (251)
T PRK14270 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLI 225 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEE
Confidence 999999999999999999999999999999999999999999999976 689999999976 577899999999999999
Q ss_pred EEcChhHHH
Q psy13765 255 YQGATDQLV 263 (606)
Q Consensus 255 ~~G~~~~~~ 263 (606)
+.|+++++.
T Consensus 226 ~~~~~~~~~ 234 (251)
T PRK14270 226 EFNKTEKIF 234 (251)
T ss_pred EeCCHHHHh
Confidence 999998874
No 175
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-39 Score=325.01 Aligned_cols=219 Identities=25% Similarity=0.361 Sum_probs=174.2
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CccEEEECCccCC
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSRN 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~----~~G~I~~~G~~~~ 102 (606)
..++++|+++.++ ++.+++|+|+++++||+++|+||||||||||+|+|+|+.++. .+|+|.++|.+..
T Consensus 3 ~~l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 74 (252)
T PRK14272 3 LLLSAQDVNIYYG--------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74 (252)
T ss_pred EEEEEeeeEEEEC--------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcc
Confidence 3688999999873 357999999999999999999999999999999999997653 3799999997653
Q ss_pred -----hhhhcccEEEEccCCCCCCCCcHHHHHHH-cCCccccCCccccCChHHHHHHHHHHHHhcCCcc-----cccCCC
Q psy13765 103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-----MFLDEP 171 (606)
Q Consensus 103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~-~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-----~~~de~ 171 (606)
...+++.++|++|++.+++.+|+.+.+.. ..... ...-+ +....+.+++...++ -.+|.+
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--------~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~ 145 (252)
T PRK14272 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--------IRDRD-HLMEVAERSLRGAALWDEVKDRLKTP 145 (252)
T ss_pred cCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--------CCCHH-HHHHHHHHHHHHcCcchhhhhhhcCC
Confidence 12456779999999999998898666542 11110 11111 111112222211111 135788
Q ss_pred CCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765 172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGG 251 (606)
Q Consensus 172 ~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 251 (606)
...+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|
T Consensus 146 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G 223 (252)
T PRK14272 146 ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVG 223 (252)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999999965 799999999987 577899999999999
Q ss_pred cEEEEcChhHHHH
Q psy13765 252 QCLYQGATDQLVN 264 (606)
Q Consensus 252 ~~~~~G~~~~~~~ 264 (606)
++++.|+++++.+
T Consensus 224 ~i~~~~~~~~~~~ 236 (252)
T PRK14272 224 DLVEHGPTDQLFT 236 (252)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999988743
No 176
>KOG0058|consensus
Probab=100.00 E-value=1.8e-39 Score=357.45 Aligned_cols=243 Identities=29% Similarity=0.404 Sum_probs=180.9
Q ss_pred ccccccccCCCCCCCCCC-CCCCCceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHH
Q psy13765 3 QVEFELSNSLSSSESGTS-LETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDV 81 (606)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~ 81 (606)
+.-||+.|..+.-+.... .+..-.-.|+|+||+|.||.+ .+.++|||+||+|+|||++||+||||+||||+.++
T Consensus 439 ~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~R-----p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasL 513 (716)
T KOG0058|consen 439 ERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTR-----PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASL 513 (716)
T ss_pred HHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCC-----CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHH
Confidence 455777776554433321 222234479999999999864 45689999999999999999999999999999999
Q ss_pred HhCCCCCCCccEEEECCccC---ChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH---HH
Q psy13765 82 LSGYRSNGVTGQILTNGHSR---NINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL---SI 155 (606)
Q Consensus 82 L~g~~~~~~~G~I~~~G~~~---~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv---~i 155 (606)
|-.++.| .+|+|.+||.++ +...+|++||+|.|+|.+|...--||+.. |++.. +-.+-+++ +=
T Consensus 514 L~rfY~P-tsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~Y--G~~~~--------t~e~i~~AAk~AN 582 (716)
T KOG0058|consen 514 LLRFYDP-TSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAY--GLDNA--------TDEEIEAAAKMAN 582 (716)
T ss_pred HHHhcCC-CCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhc--CCCCC--------CHHHHHHHHHHhC
Confidence 9999887 599999999875 45778999999999999998744444432 22211 11111111 11
Q ss_pred HHHHhcCC-ccc--ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy13765 156 ALELINNP-RVM--FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH 232 (606)
Q Consensus 156 a~~L~~~~-~~~--~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H 232 (606)
|-+++.+- +=+ .-+|....+|||||||++|||||++||+||||||.||+||+++...+.+.|.++.+ ++|||++.|
T Consensus 583 ah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAH 661 (716)
T KOG0058|consen 583 AHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAH 661 (716)
T ss_pred hHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEeh
Confidence 22222211 111 33445555555555555666666666999999999999999999999999998876 599999999
Q ss_pred CCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 233 QPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 233 ~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
..+. .+.+|+|+++++|++++.|+.+|+++
T Consensus 662 RLST--V~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 662 RLST--VRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred hhhH--hhhccEEEEEcCCeEEecccHHHHhh
Confidence 9874 48899999999999999999999875
No 177
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-39 Score=322.71 Aligned_cols=214 Identities=24% Similarity=0.419 Sum_probs=171.1
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR 107 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~ 107 (606)
|+++|+++.+. .+ +|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... ...+
T Consensus 1 l~~~~l~~~~~--------~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p-~~G~v~i~g~~~~~~~~~~ 70 (235)
T cd03299 1 LKVENLSKDWK--------EF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP-DSGKILLNGKDITNLPPEK 70 (235)
T ss_pred CeeEeEEEEeC--------Cc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEcCcCChhH
Confidence 46889998862 23 89999999999999999999999999999999999876 58999999986532 2235
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl~I 185 (606)
+.++|++|++.+++.+|+.+.+....... .....+ ++++ .+++..-.+ -..|.+...+|+|||||+.|
T Consensus 71 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-------~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 140 (235)
T cd03299 71 RDISYVPQNYALFPHMTVYKNIAYGLKKR-------KVDKKEIERKV---LEIAEMLGIDHLLNRKPETLSGGEQQRVAI 140 (235)
T ss_pred cCEEEEeecCccCCCccHHHHHHHHHHHc-------CCCHHHHHHHH---HHHHHHcCChhHHhcCcccCCHHHHHHHHH
Confidence 68999999999999899876664311000 011111 1222 222222222 14577888899999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
|+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+.||++++|++|++++.|+++++.
T Consensus 141 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 141 ARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999775 999999999986 467899999999999999999987764
No 178
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-39 Score=329.16 Aligned_cols=220 Identities=22% Similarity=0.377 Sum_probs=169.5
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~ 106 (606)
..|+++||+++|+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++......
T Consensus 5 ~~l~~~~l~~~~~-------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~ 76 (272)
T PRK15056 5 AGIVVNDVTVTWR-------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL-ASGKISILGQPTRQALQ 76 (272)
T ss_pred ceEEEEeEEEEec-------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEhHHhhc
Confidence 3689999999873 235699999999999999999999999999999999999876 59999999987543222
Q ss_pred cccEEEEccCCCCCC--CCcHHHHHHHcCCccccCCccccCC-hHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhH
Q psy13765 107 RRVSCYIQQDDRLQP--LLTIENVMSLLGLDESQNTRSSQLS-GGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKR 182 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~--~ltv~~~l~~~gl~~~~~~~~~~lS-gGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~kr 182 (606)
++.++|++|++.+.. ..++++.+.. +...... ..... ...++++. +++...++- ..|.+...+|||||||
T Consensus 77 ~~~i~~v~q~~~~~~~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~---~~l~~~gl~~~~~~~~~~LSgG~~qr 150 (272)
T PRK15056 77 KNLVAYVPQSEEVDWSFPVLVEDVVMM-GRYGHMG--WLRRAKKRDRQIVT---AALARVDMVEFRHRQIGELSGGQKKR 150 (272)
T ss_pred cceEEEeccccccccCCCcchhhheec-ccccccc--cccCCCHHHHHHHH---HHHHHcCChhHhcCCcccCCHHHHHH
Confidence 346999999986532 2355554421 1110000 00011 11233332 222222232 4588889999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||+++++ +|++++.|+++++
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 99999999999999999999999999999999999999878999999999976 577899999877 8999999998875
No 179
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=327.63 Aligned_cols=218 Identities=23% Similarity=0.309 Sum_probs=174.4
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccC
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSR 101 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~ 101 (606)
...|+++||+++++ .+++|+|+|+++++||+++|+||||||||||+++|+|+.++ ..+|+|.++|.+.
T Consensus 18 ~~~l~~~nl~~~~~--------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 89 (267)
T PRK14237 18 EIALSTKDLHVYYG--------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 (267)
T ss_pred CeEEEEeeEEEEEC--------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence 45799999999872 36799999999999999999999999999999999999753 3689999999865
Q ss_pred C-----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-----cccCC
Q psy13765 102 N-----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-----MFLDE 170 (606)
Q Consensus 102 ~-----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-----~~~de 170 (606)
. ....++.++|++|++.+++ .|+.+.+... ... . +..+.-+ +.++ .+++....+ -.+|+
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~-~~~--~---~~~~~~~~~~~~---~~~l~~~~l~~~i~~~~~~ 159 (267)
T PRK14237 90 NRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFA-LER--A---GVKDKKVLDEIV---ETSLKQAALWDQVKDDLHK 159 (267)
T ss_pred ccccCChHHHhcceEEEecCCcccc-ccHHHHHHhH-HHh--c---CCCCHHHHHHHH---HHHHHHcCCCchhhhhhcC
Confidence 3 2245678999999998887 5886665431 110 0 0011111 1222 222222222 14688
Q ss_pred CCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 171 ~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
+...+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.++|+++++ +.|||++||+++ .+.++||++++|++
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~ 237 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYL 237 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999964 799999999987 57789999999999
Q ss_pred CcEEEEcChhHHH
Q psy13765 251 GQCLYQGATDQLV 263 (606)
Q Consensus 251 G~~~~~G~~~~~~ 263 (606)
|++++.|+++++.
T Consensus 238 G~i~~~g~~~~~~ 250 (267)
T PRK14237 238 GDLIEYDKTRNIF 250 (267)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998874
No 180
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6.9e-39 Score=321.25 Aligned_cols=211 Identities=24% Similarity=0.335 Sum_probs=165.5
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~ 104 (606)
.|+++||+++|+.+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... .
T Consensus 6 ~l~~~~l~~~~~~~----~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~~~~~~~~ 80 (228)
T PRK10584 6 IVEVHHLKKSVGQG----EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG-SSGEVSLVGQPLHQMDEE 80 (228)
T ss_pred eEEEeeeEEEccCC----CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCeeEEECCEEcccCCHH
Confidence 58999999987421 0113599999999999999999999999999999999999876 59999999986532 1
Q ss_pred h---h-cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCch
Q psy13765 105 A---F-RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPND 178 (606)
Q Consensus 105 ~---~-~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g 178 (606)
. . ++.++|++|++.+++.+|+.+.+...... + ..+.- .++++. +++..-++- ..+.+...+|+|
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~---~----~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G 150 (228)
T PRK10584 81 ARAKLRAKHVGFVFQSFMLIPTLNALENVELPALL---R----GESSRQSRNGAK---ALLEQLGLGKRLDHLPAQLSGG 150 (228)
T ss_pred HHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHh---c----CCCHHHHHHHHH---HHHHHcCCHhHhhCChhhCCHH
Confidence 1 2 35799999999999988986655431100 0 01111 123333 233322332 457788899999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+ +.+|++++|++|++++
T Consensus 151 e~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 151 EQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999765 899999999987 45 5699999999999875
No 181
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=9.6e-39 Score=356.48 Aligned_cols=214 Identities=20% Similarity=0.323 Sum_probs=174.7
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~ 104 (606)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++... .
T Consensus 11 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~ 81 (510)
T PRK15439 11 LLCARSISKQY--------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP-DSGTLEIGGNPCARLTPA 81 (510)
T ss_pred eEEEEeEEEEe--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCCCCHH
Confidence 59999999987 235699999999999999999999999999999999999876 59999999986532 2
Q ss_pred hh-cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765 105 AF-RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 105 ~~-~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl 183 (606)
.. ++.++||+|++.+++.+|+.+.+.. ++.. ..-.++++.-+.+.+.-. -.+|.+...|||||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~-~~~~---------~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv 149 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFPNLSVKENILF-GLPK---------RQASMQKMKQLLAALGCQ--LDLDSSAGSLEVADRQIV 149 (510)
T ss_pred HHHhCCEEEEeccCccCCCCcHHHHhhc-cccc---------chHHHHHHHHHHHHcCCC--ccccCChhhCCHHHHHHH
Confidence 22 3469999999999999999776543 2110 011233433222322221 145778888999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 150 ~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 150 EILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHHcC
Confidence 9999999999999999999999999999999999999888999999999976 477899999999999999999987653
No 182
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-38 Score=323.44 Aligned_cols=219 Identities=24% Similarity=0.330 Sum_probs=172.4
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--C--CccEEEECCccCC-
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--G--VTGQILTNGHSRN- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~--~~G~I~~~G~~~~- 102 (606)
.|+++||++.++ ++++++|+|+++++||+++|+||||||||||+++|+|+.++ . .+|+|.++|++..
T Consensus 3 ~l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14240 3 KISVKDLDLFYG--------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK 74 (250)
T ss_pred eEEEEEEEEEEC--------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 488999999873 35699999999999999999999999999999999998642 1 4899999998653
Q ss_pred ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCC-cc-cccCCCCCCC
Q psy13765 103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNP-RV-MFLDEPTTSN 175 (606)
Q Consensus 103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~-~~-~~~de~~~~~ 175 (606)
....++.++|++|++.+++ .|+.+.+... .. ..+ ..+..+ ++++.-+...+.-. .+ -..|.+...+
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~-~~-~~~----~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 147 (250)
T PRK14240 75 SDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYG-PR-THG----IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGL 147 (250)
T ss_pred cccchHHHhccEEEEecCCccCc-ccHHHHHHHH-HH-hcC----CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCC
Confidence 2345678999999998887 7886655421 10 000 011111 23333222222110 11 1458889999
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|+++.
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~ 225 (250)
T PRK14240 148 SGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVE 225 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999964 799999999976 5778999999999999999
Q ss_pred EcChhHHH
Q psy13765 256 QGATDQLV 263 (606)
Q Consensus 256 ~G~~~~~~ 263 (606)
.|+++++.
T Consensus 226 ~~~~~~~~ 233 (250)
T PRK14240 226 FGDTVDLF 233 (250)
T ss_pred eCCHHHHH
Confidence 99988764
No 183
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-38 Score=323.51 Aligned_cols=220 Identities=26% Similarity=0.370 Sum_probs=173.0
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCCh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRNI 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~~ 103 (606)
.|+++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|+.++ ..+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~--------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~ 74 (250)
T PRK14262 3 IIEIENFSAYYG--------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74 (250)
T ss_pred eEEEEeeEEEeC--------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 488999999872 35699999999999999999999999999999999999753 258999999976531
Q ss_pred -----hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcC-Ccc-cccCCCCCCC
Q psy13765 104 -----NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINN-PRV-MFLDEPTTSN 175 (606)
Q Consensus 104 -----~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~-~~~-~~~de~~~~~ 175 (606)
...++.++|++|++.+++ .|+.+.+... ... ... .+.. .++++.-+.+.+.- ..+ -.+|++...+
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~-~~~-~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 147 (250)
T PRK14262 75 PQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFG-PRI-HGV----KSKHKLDRIVEESLKKAALWDEVKSELNKPGTRL 147 (250)
T ss_pred chhhHHHhhhhEEEEecCCccCc-ccHHHHHHHH-HHH-cCC----CcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhc
Confidence 245678999999999887 7886655431 110 000 0111 12222222222211 011 1368889999
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|++|+++.
T Consensus 148 S~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14262 148 SGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIE 225 (250)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999975 789999999976 4678999999999999999
Q ss_pred EcChhHHHH
Q psy13765 256 QGATDQLVN 264 (606)
Q Consensus 256 ~G~~~~~~~ 264 (606)
.|+++++.+
T Consensus 226 ~g~~~~~~~ 234 (250)
T PRK14262 226 YGPTREIVE 234 (250)
T ss_pred ecCHHHHHh
Confidence 999987753
No 184
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.6e-39 Score=312.09 Aligned_cols=176 Identities=31% Similarity=0.564 Sum_probs=155.6
Q ss_pred EEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhhh
Q psy13765 30 KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INAF 106 (606)
Q Consensus 30 ~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~~ 106 (606)
+++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ...+
T Consensus 1 ~~~~l~~~~~--------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~ 71 (180)
T cd03214 1 EVENLSVGYG--------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKEL 71 (180)
T ss_pred CeeEEEEEEC--------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHH
Confidence 4789998873 25699999999999999999999999999999999999876 5999999998653 3345
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA 186 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA 186 (606)
++.++|++| +++.+|+.+..++.+..||||||||+++|++|+.+
T Consensus 72 ~~~i~~~~q------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~------------------------ 115 (180)
T cd03214 72 ARKIAYVPQ------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQE------------------------ 115 (180)
T ss_pred HHHHhHHHH------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcC------------------------
Confidence 667999999 78889999888888999999999999977777766
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|++++|||||+|||+.++..+.+.|++++++ |.|+|+++|+++ .+.++||++++|++|++++.|
T Consensus 116 ------p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 116 ------PPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred ------CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999876 899999999987 466899999999999988654
No 185
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=6.6e-39 Score=323.44 Aligned_cols=201 Identities=28% Similarity=0.426 Sum_probs=159.5
Q ss_pred ccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhhhcccEEEEc-cCCCCCCC
Q psy13765 46 QEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INAFRRVSCYIQ-QDDRLQPL 122 (606)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~~~~~~~yv~-Q~~~l~~~ 122 (606)
++.+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.. ...+++.++|++ |++.+++.
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP-TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 3567899999999999999999999999999999999999876 5999999997542 234567899998 56778888
Q ss_pred CcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC
Q psy13765 123 LTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201 (606)
Q Consensus 123 ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP 201 (606)
+|+.+.+..... . .+....+ ++++.-+...+.-+ -..|.+...+|+|||||+.||+||+.+|++|+||||
T Consensus 110 ~tv~e~l~~~~~--~-----~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 110 LPVIDSFYLLAA--I-----YDLPPARFKKRLDELSELLDLE--ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CcHHHHHHHHHH--H-----cCCCHHHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999876654210 0 0111111 22332222222111 145778889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 202 TTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 202 TsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|+|||+.++..+.+.|++++++ |+|||+++|+++ .+.++||++++|++|++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999775 899999999986 577899999999999998765
No 186
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-38 Score=320.53 Aligned_cols=219 Identities=24% Similarity=0.430 Sum_probs=168.9
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA 105 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~ 105 (606)
|+++|++++++. .++.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ...
T Consensus 1 i~~~~l~~~~~~------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPG------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV-DSGRILIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCC------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC-CCCEEEECCEEhhhCCHHH
Confidence 468999998732 123699999999999999999999999999999999999876 5999999997642 234
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcC-C-cc-cccCCCCCCCCchhhhH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN-P-RV-MFLDEPTTSNPNDQKKR 182 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~-~-~~-~~~de~~~~~s~g~~kr 182 (606)
.++.++|++|++.+++ .|+.+.+... ... .....+. ...++..+ .+++.. | .+ -..|.+...+|+|||||
T Consensus 74 ~~~~i~~~~q~~~~~~-~tv~enl~~~-~~~---~~~~~~~-~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 146 (234)
T cd03251 74 LRRQIGLVSQDVFLFN-DTVAENIAYG-RPG---ATREEVE-EAARAANA-HEFIMELPEGYDTVIGERGVKLSGGQRQR 146 (234)
T ss_pred HHhhEEEeCCCCeecc-ccHHHHhhcc-CCC---CCHHHHH-HHHHHcCc-HHHHHhcccCcceeeccCCCcCCHHHHHH
Confidence 5678999999998887 5886655331 111 0000000 00011111 122211 1 11 13577889999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||++.. +. .||++++|++|+++..|+++++
T Consensus 147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~v~~l~~G~i~~~~~~~~~ 223 (234)
T cd03251 147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IE-NADRIVVLEDGKIVERGTHEEL 223 (234)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-Hh-hCCEEEEecCCeEeeeCCHHHH
Confidence 9999999999999999999999999999999999999964 8999999999874 54 4999999999999999998877
Q ss_pred HH
Q psy13765 263 VN 264 (606)
Q Consensus 263 ~~ 264 (606)
.+
T Consensus 224 ~~ 225 (234)
T cd03251 224 LA 225 (234)
T ss_pred HH
Confidence 54
No 187
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-38 Score=323.38 Aligned_cols=219 Identities=21% Similarity=0.301 Sum_probs=173.7
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC-
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~- 102 (606)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ..+|+|.++|.+..
T Consensus 3 ~l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 74 (249)
T PRK14253 3 KFNIENLDLFYG--------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74 (249)
T ss_pred eEEEeccEEEEC--------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccc
Confidence 588999999873 35799999999999999999999999999999999998764 24899999997652
Q ss_pred ---hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcC-Ccc-cccCCCCCCCC
Q psy13765 103 ---INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINN-PRV-MFLDEPTTSNP 176 (606)
Q Consensus 103 ---~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~-~~~-~~~de~~~~~s 176 (606)
....++.++|++|++.+++ .|+.+.+... ... .. . .+..+ ++++.-+.+.+.- +.+ -.+|.+...+|
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~-~~~--~~-~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS 147 (249)
T PRK14253 75 NIDVADLRIKVGMVFQKPNPFP-MSIYENVAYG-LRA--QG-I--KDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLS 147 (249)
T ss_pred ccchHHHHhheeEEecCCCcCc-ccHHHHHHhH-HHh--cC-C--CchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCC
Confidence 2355678999999999887 7886655421 110 00 0 01111 2333322222221 111 24688899999
Q ss_pred chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256 (606)
Q Consensus 177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~ 256 (606)
+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|+++..
T Consensus 148 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~ 225 (249)
T PRK14253 148 GGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEH 225 (249)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999976 589999999976 57789999999999999999
Q ss_pred cChhHHH
Q psy13765 257 GATDQLV 263 (606)
Q Consensus 257 G~~~~~~ 263 (606)
|+++++.
T Consensus 226 g~~~~~~ 232 (249)
T PRK14253 226 DDTQVIF 232 (249)
T ss_pred CCHHHHH
Confidence 9987763
No 188
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.3e-38 Score=361.58 Aligned_cols=216 Identities=27% Similarity=0.403 Sum_probs=167.9
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
..|+++||++.+. +++++|+|+|+++++||.+||+||||||||||+++|+|++ | .+|+|.+||.+. +.
T Consensus 348 ~~i~~~~vsf~~~-------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i~g~~i~~~~~ 418 (588)
T PRK11174 348 VTIEAEDLEILSP-------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKINGIELRELDP 418 (588)
T ss_pred ceEEEEeeEEecc-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEECCEecccCCH
Confidence 4699999998652 2357999999999999999999999999999999999998 6 589999999764 45
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH----HHHHHhcCCcc--cccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS----IALELINNPRV--MFLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~----ia~~L~~~~~~--~~~de~~~~~s~ 177 (606)
+.+|+.++||+|++.+++. |+.|.+.. |-. +.+-.|-+.+. +..-+..-|+= -...|....|||
T Consensus 419 ~~lr~~i~~v~Q~~~LF~~-TI~eNI~~-g~~--------~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSG 488 (588)
T PRK11174 419 ESWRKHLSWVGQNPQLPHG-TLRDNVLL-GNP--------DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV 488 (588)
T ss_pred HHHHhheEEecCCCcCCCc-CHHHHhhc-CCC--------CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCH
Confidence 7789999999999999876 66544432 211 12222222221 11111112221 123445566777
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +++|+|+++|+++. .+.||+|++|++|++++.|
T Consensus 489 GQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~--i~~aD~Iivl~~G~i~e~G 565 (588)
T PRK11174 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLED--LAQWDQIWVMQDGQIVQQG 565 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHH--HHhCCEEEEEeCCeEeecC
Confidence 88888888888888899999999999999999999999999885 47999999999863 4789999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++.+
T Consensus 566 ~~~eL~~ 572 (588)
T PRK11174 566 DYAELSQ 572 (588)
T ss_pred CHHHHHh
Confidence 9998864
No 189
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-38 Score=326.22 Aligned_cols=220 Identities=23% Similarity=0.281 Sum_probs=172.9
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccC
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSR 101 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~ 101 (606)
+..|+++||++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ..+|+|.++|++.
T Consensus 18 ~~~l~~~nl~~~~~--------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l 89 (274)
T PRK14265 18 HSVFEVEGVKVFYG--------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI 89 (274)
T ss_pred CceEEEeeEEEEeC--------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence 44799999999872 35699999999999999999999999999999999998642 1489999999765
Q ss_pred C-----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcC-Ccc-cccCCCCCC
Q psy13765 102 N-----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN-PRV-MFLDEPTTS 174 (606)
Q Consensus 102 ~-----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~-~~~-~~~de~~~~ 174 (606)
. ...+++.++|++|++.+++. |+.+.+... ... . ....-.++++.-+.+.+.- ..+ -.+|++...
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~-~~~-~-----~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 161 (274)
T PRK14265 90 YDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFA-PRA-N-----GYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTA 161 (274)
T ss_pred ccccchhHHHhhcEEEEccCCccccc-cHHHHHHhH-HHh-c-----CchHHHHHHHHHHHHHcccchhhHHHhcCCccc
Confidence 2 23456789999999988875 876655431 110 0 0111112222211222110 001 146788999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec-----
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS----- 249 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~----- 249 (606)
+|+|||||+.||+||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|+++ .+.++||++++|+
T Consensus 162 LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~ 239 (274)
T PRK14265 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDE 239 (274)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEeccccc
Confidence 999999999999999999999999999999999999999999999975 689999999987 5778999999997
Q ss_pred ----CCcEEEEcChhHHH
Q psy13765 250 ----GGQCLYQGATDQLV 263 (606)
Q Consensus 250 ----~G~~~~~G~~~~~~ 263 (606)
+|++++.|+++++.
T Consensus 240 ~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 240 YGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred ccccCceEEEeCCHHHHH
Confidence 89999999998874
No 190
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1e-38 Score=322.03 Aligned_cols=221 Identities=27% Similarity=0.430 Sum_probs=168.7
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA 105 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~ 105 (606)
++++|+++.++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ...
T Consensus 1 l~i~~l~~~~~~~-----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~ 74 (238)
T cd03249 1 IEFKNVSFRYPSR-----PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP-TSGEILLDGVDIRDLNLRW 74 (238)
T ss_pred CeEEEEEEecCCC-----CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC-CCCEEEECCEehhhcCHHH
Confidence 4689999987421 235699999999999999999999999999999999999876 5999999997642 234
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhc-CCc-c-cccCCCCCCCCchhhhH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN-NPR-V-MFLDEPTTSNPNDQKKR 182 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~-~~~-~-~~~de~~~~~s~g~~kr 182 (606)
.++.++|++|++.+++ .|+.+.+... ... .....+. -..++..+ ..++. -|+ + ...+.+...+|+|||||
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~-~~~---~~~~~~~-~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 147 (238)
T cd03249 75 LRSQIGLVSQEPVLFD-GTIAENIRYG-KPD---ATDEEVE-EAAKKANI-HDFIMSLPDGYDTLVGERGSQLSGGQKQR 147 (238)
T ss_pred HHhhEEEECCchhhhh-hhHHHHhhcc-CCC---CCHHHHH-HHHHHcCh-HHHHHhhccccceeeccCCccCCHHHHHH
Confidence 4567999999998876 5886665431 111 0000000 00000111 11111 111 1 13466778999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
+.||+||+.+|++++|||||+|||+.++..+.+.|++++ +|+|||+++|+++. + ..||++++|++|++++.|+.+++
T Consensus 148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v~~l~~G~i~~~~~~~~~ 224 (238)
T cd03249 148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLIAVLQNGQVVEQGTHDEL 224 (238)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999997 79999999999874 5 48999999999999999998876
Q ss_pred HHH
Q psy13765 263 VNY 265 (606)
Q Consensus 263 ~~~ 265 (606)
.+.
T Consensus 225 ~~~ 227 (238)
T cd03249 225 MAQ 227 (238)
T ss_pred hhc
Confidence 553
No 191
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-38 Score=326.22 Aligned_cols=218 Identities=23% Similarity=0.352 Sum_probs=174.7
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~ 102 (606)
..|+++||+++|+ ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ ..+|+|.++|.+..
T Consensus 20 ~~l~i~nl~~~~~--------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 20 PAMAAVNLTLGFA--------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred cEEEEeeEEEEEC--------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcc
Confidence 4689999999973 35799999999999999999999999999999999999764 25899999997653
Q ss_pred ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHH-HHHHHHHHHhcCCccc-----ccCCCC
Q psy13765 103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK-KRLSIALELINNPRVM-----FLDEPT 172 (606)
Q Consensus 103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~~-----~~de~~ 172 (606)
...+++.++|++|++.+++ .|+.+.+... .... + ..+..+. +++ .+++...++. .+++..
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~-~~~~-~----~~~~~~~~~~~---~~~l~~~~l~~~~~~~l~~~~ 161 (276)
T PRK14271 92 NYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAG-VRAH-K----LVPRKEFRGVA---QARLTEVGLWDAVKDRLSDSP 161 (276)
T ss_pred ccchhHHHhhheEEeccCCccCC-ccHHHHHHHH-HHhc-c----CCCHHHHHHHH---HHHHHHcCCCchhhhHhhCCc
Confidence 2345778999999999888 6886655421 1100 0 0122222 222 2222222221 357788
Q ss_pred CCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 173 ~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
..+|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+++|++++|++|+
T Consensus 162 ~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~ 239 (276)
T PRK14271 162 FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGR 239 (276)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999976 589999999976 5778999999999999
Q ss_pred EEEEcChhHHHH
Q psy13765 253 CLYQGATDQLVN 264 (606)
Q Consensus 253 ~~~~G~~~~~~~ 264 (606)
++..|+++++.+
T Consensus 240 i~~~g~~~~~~~ 251 (276)
T PRK14271 240 LVEEGPTEQLFS 251 (276)
T ss_pred EEEeCCHHHHHh
Confidence 999999988743
No 192
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-39 Score=356.50 Aligned_cols=219 Identities=21% Similarity=0.306 Sum_probs=177.7
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCccEEEECCccCCh---
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN-GVTGQILTNGHSRNI--- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~-~~~G~I~~~G~~~~~--- 103 (606)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ +.+|+|.++|++...
T Consensus 5 ~l~~~nl~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~ 76 (506)
T PRK13549 5 LLEMKNITKTF--------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNI 76 (506)
T ss_pred eEEEeeeEEEe--------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCH
Confidence 58999999987 235799999999999999999999999999999999999875 269999999986532
Q ss_pred h-hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765 104 N-AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQK 180 (606)
Q Consensus 104 ~-~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~ 180 (606)
. ..++.++||+|++.+++.+|+.+.+.. ++... ..+..+..+ ++++. +++..-.+- ..|.+...||||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~-~~~~~---~~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LSgGqk 149 (506)
T PRK13549 77 RDTERAGIAIIHQELALVKELSVLENIFL-GNEIT---PGGIMDYDAMYLRAQ---KLLAQLKLDINPATPVGNLGLGQQ 149 (506)
T ss_pred HHHHHCCeEEEEeccccCCCCcHHHHhhh-ccccc---ccCCcCHHHHHHHHH---HHHHHcCCCCCcccchhhCCHHHH
Confidence 1 235679999999999999999876643 22110 000112111 23333 333333332 56889999999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
||+.||+||+.+|++|||||||+|||+.++..+.++|++++++|+|||++||++. .+.++||++++|++|++++.|+++
T Consensus 150 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~ 228 (506)
T PRK13549 150 QLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAA 228 (506)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeecccc
Confidence 9999999999999999999999999999999999999999888999999999976 577899999999999999999887
Q ss_pred HH
Q psy13765 261 QL 262 (606)
Q Consensus 261 ~~ 262 (606)
++
T Consensus 229 ~~ 230 (506)
T PRK13549 229 GM 230 (506)
T ss_pred cC
Confidence 64
No 193
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-38 Score=308.10 Aligned_cols=172 Identities=33% Similarity=0.541 Sum_probs=149.2
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----h
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----I 103 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----~ 103 (606)
|+++|++++++ ++++++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.. .
T Consensus 1 i~~~~l~~~~~--------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~ 71 (178)
T cd03229 1 LELKNVSKRYG--------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILIDGEDLTDLEDEL 71 (178)
T ss_pred CEEEEEEEEEC--------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccchhH
Confidence 46899999873 35699999999999999999999999999999999999876 5999999997643 2
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl 183 (606)
...++.++|++|++.+++..|+.+.+... ||||||||+++|++|+.+
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------lS~G~~qr~~la~al~~~--------------------- 118 (178)
T cd03229 72 PPLRRRIGMVFQDFALFPHLTVLENIALG------------LSGGQQQRVALARALAMD--------------------- 118 (178)
T ss_pred HHHhhcEEEEecCCccCCCCCHHHheeec------------CCHHHHHHHHHHHHHHCC---------------------
Confidence 34567899999999998888987654321 888888888876666666
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+.||++++|++|+
T Consensus 119 ---------p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 ---------PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred ---------CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999999887 899999999976 5667999999999885
No 194
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-38 Score=325.72 Aligned_cols=220 Identities=25% Similarity=0.329 Sum_probs=174.9
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~ 102 (606)
..++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ +.+|+|.++|.+..
T Consensus 24 ~~l~~~nl~~~~~--------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 24 TALEVRNLNLFYG--------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred cEEEEEEEEEEEC--------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 3699999999873 35699999999999999999999999999999999999763 25899999998653
Q ss_pred -----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCc-c-cccCCCCCC
Q psy13765 103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPR-V-MFLDEPTTS 174 (606)
Q Consensus 103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~-~-~~~de~~~~ 174 (606)
...+++.++|++|++.+++. |+.+.+.. +.. .... -+.. .++++.-+.+.+.-.+ + -.+|.+...
T Consensus 96 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~-~~~-~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 168 (272)
T PRK14236 96 DKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVY-GLR-LQGI----NNRRVLDEAVERSLRGAALWDEVKDRLHENAFG 168 (272)
T ss_pred ccccCHHHHhccEEEEecCCccCcc-cHHHHHHH-HHH-hcCC----CcHHHHHHHHHHHHHHcCCChhHHHHhhCCccc
Confidence 23457789999999998886 88665542 111 0000 0111 1233333333322111 1 146788899
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
+|+|||||+.||+||+++|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.||++++|++|+++
T Consensus 169 LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~ 246 (272)
T PRK14236 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLV 246 (272)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999976 789999999976 467899999999999999
Q ss_pred EEcChhHHH
Q psy13765 255 YQGATDQLV 263 (606)
Q Consensus 255 ~~G~~~~~~ 263 (606)
..|+++++.
T Consensus 247 ~~g~~~~~~ 255 (272)
T PRK14236 247 EYGDTDTLF 255 (272)
T ss_pred ecCCHHHHh
Confidence 999988764
No 195
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-38 Score=319.01 Aligned_cols=219 Identities=26% Similarity=0.436 Sum_probs=168.1
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~ 104 (606)
.|+++|++++++ +.+.+++|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+.. ..
T Consensus 2 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~ 73 (229)
T cd03254 2 EIEFENVNFSYD-------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP-QKGQILIDGIDIRDISRK 73 (229)
T ss_pred eEEEEEEEEecC-------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCEeHHHcCHH
Confidence 478999999873 124699999999999999999999999999999999999876 5999999997642 34
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcC-C-cc-cccCCCCCCCCchhhh
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN-P-RV-MFLDEPTTSNPNDQKK 181 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~-~-~~-~~~de~~~~~s~g~~k 181 (606)
.+++.++|++|++.+++. |+.+.+..... +.....+ -...+++.+. +++.. | .+ -.++.+...+|+||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~----~~~~~~~-~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~LS~G~~~ 146 (229)
T cd03254 74 SLRSMIGVVLQDTFLFSG-TIMENIRLGRP----NATDEEV-IEAAKEAGAH-DFIMKLPNGYDTVLGENGGNLSQGERQ 146 (229)
T ss_pred HHhhhEEEecCCchhhhh-HHHHHHhccCC----CCCHHHH-HHHHHHhChH-HHHHhCcccccCHhhcCCCcCCHHHHH
Confidence 557789999999988775 77655543211 0000000 0001111111 11111 1 11 1346677899999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~ 261 (606)
|+.||+||+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||++.. + ..||++++|++|++++.|+.++
T Consensus 147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~~~~~~ 223 (229)
T cd03254 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDDGKIIEEGTHDE 223 (229)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999996 58999999999864 5 4699999999999999998877
Q ss_pred HHH
Q psy13765 262 LVN 264 (606)
Q Consensus 262 ~~~ 264 (606)
+.+
T Consensus 224 ~~~ 226 (229)
T cd03254 224 LLA 226 (229)
T ss_pred HHh
Confidence 643
No 196
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-38 Score=322.19 Aligned_cols=218 Identities=25% Similarity=0.355 Sum_probs=172.7
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--C--CCccEEEECCccCC-
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--N--GVTGQILTNGHSRN- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~--~~~G~I~~~G~~~~- 102 (606)
.|+++|++++++ .+++|+|+|++|++||+++|+||||||||||+++|+|+.+ + ..+|+|.++|++..
T Consensus 4 ~l~~~~l~~~~~--------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~ 75 (251)
T PRK14251 4 IISAKDVHLSYG--------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYG 75 (251)
T ss_pred eEEEEeeEEEEC--------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccc
Confidence 589999999872 3579999999999999999999999999999999999975 2 25899999998642
Q ss_pred ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH--HHHHHHHHHHHhcC-Ccc-cccCCCCCC
Q psy13765 103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG--QKKRLSIALELINN-PRV-MFLDEPTTS 174 (606)
Q Consensus 103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG--qrqRv~ia~~L~~~-~~~-~~~de~~~~ 174 (606)
....++.++|++|++.+++ .|+.+.+... ... .+.... .++++.-+.+.+.- ..+ ..+|.+...
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~-~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 147 (251)
T PRK14251 76 SKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYG-LKI------AGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQA 147 (251)
T ss_pred ccchHHHhhccEEEEecCCccCC-CcHHHHHHHH-HHH------cCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhh
Confidence 1245678999999998886 6887665431 110 011111 12333322222211 000 245888999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
+|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||++++|++|+++
T Consensus 148 LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~ 225 (251)
T PRK14251 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLI 225 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999864 699999999986 477889999999999999
Q ss_pred EEcChhHHH
Q psy13765 255 YQGATDQLV 263 (606)
Q Consensus 255 ~~G~~~~~~ 263 (606)
..|+++++.
T Consensus 226 ~~~~~~~~~ 234 (251)
T PRK14251 226 EAGPTEEMF 234 (251)
T ss_pred EeCCHHHHH
Confidence 999988764
No 197
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.1e-38 Score=322.68 Aligned_cols=217 Identities=22% Similarity=0.336 Sum_probs=168.0
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc-----CC
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-----RN 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~-----~~ 102 (606)
.|+++||++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++ ..
T Consensus 3 ~l~~~~l~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~ 73 (253)
T TIGR02323 3 LLQVSGLSKSYG--------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP-DHGTATYIMRSGAELELY 73 (253)
T ss_pred eEEEeeeEEEeC--------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEEecccccccccc
Confidence 589999999873 35689999999999999999999999999999999999876 59999999865 32
Q ss_pred ---hhh----hcccEEEEccCCC--CCCCCcHHHHHH-HcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCC
Q psy13765 103 ---INA----FRRVSCYIQQDDR--LQPLLTIENVMS-LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDE 170 (606)
Q Consensus 103 ---~~~----~~~~~~yv~Q~~~--l~~~ltv~~~l~-~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de 170 (606)
... .++.++|++|++. +.+..|+.+.+. .+......+ .+-.+++ +.+++..-++ -.+|.
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~---~~~~l~~l~l~~~~~~~ 144 (253)
T TIGR02323 74 QLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH------YGNIRAA---AHDWLEEVEIDPTRIDD 144 (253)
T ss_pred cCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccc------hHHHHHH---HHHHHHHcCCChhhhhc
Confidence 111 2356999999975 344556543332 110000000 0101122 2233333333 25678
Q ss_pred CCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeec
Q psy13765 171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 171 ~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
+...+|||||||+.||+||+++|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+...+|++++|+
T Consensus 145 ~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~ 223 (253)
T TIGR02323 145 LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQ 223 (253)
T ss_pred CchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence 88899999999999999999999999999999999999999999999998764 899999999976 5667899999999
Q ss_pred CCcEEEEcChhHHH
Q psy13765 250 GGQCLYQGATDQLV 263 (606)
Q Consensus 250 ~G~~~~~G~~~~~~ 263 (606)
+|++++.|+++++.
T Consensus 224 ~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 224 QGRVVESGLTDQVL 237 (253)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999988764
No 198
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-38 Score=326.50 Aligned_cols=218 Identities=24% Similarity=0.362 Sum_probs=172.7
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~ 102 (606)
..|+++||+++|+ ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ +.+|+|.++|.+..
T Consensus 38 ~~l~i~~l~~~~~--------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 38 TVIEARDLNVFYG--------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred ceEEEEEEEEEEC--------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 4689999999872 35699999999999999999999999999999999999752 35899999997642
Q ss_pred -----hhhhcccEEEEccCCCCCCCCcHHHHHHHc-CCccccCCccccCChHHHHHHHHHHHHhcCC-cc-cccCCCCCC
Q psy13765 103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSLL-GLDESQNTRSSQLSGGQKKRLSIALELINNP-RV-MFLDEPTTS 174 (606)
Q Consensus 103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~-~~-~~~de~~~~ 174 (606)
...+++.++|++|++.+++. |+.+.+... ... ....-.++++.-+.+.+.-. .+ -.+|++...
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--------~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~ 180 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ--------GYDGDIDERVEESLRRAALWDEVKDQLDSSGLD 180 (285)
T ss_pred ccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCCchhHHHHhCCccc
Confidence 23456789999999988885 886655431 111 01111233443333332211 01 146888999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee-eecCCcE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY-LLSGGQC 253 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~-~L~~G~~ 253 (606)
||+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ .|||+++|++. .+.++|||++ +|++|++
T Consensus 181 LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~-~i~~~~dri~v~l~~G~i 258 (285)
T PRK14254 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQ-QAARISDKTAVFLTGGEL 258 (285)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHH-HHHhhcCEEEEEeeCCEE
Confidence 9999999999999999999999999999999999999999999999764 89999999976 5778999975 6799999
Q ss_pred EEEcChhHHH
Q psy13765 254 LYQGATDQLV 263 (606)
Q Consensus 254 ~~~G~~~~~~ 263 (606)
+..|+++++.
T Consensus 259 ~~~g~~~~~~ 268 (285)
T PRK14254 259 VEFDDTDKIF 268 (285)
T ss_pred EEeCCHHHHH
Confidence 9999988763
No 199
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.5e-38 Score=326.75 Aligned_cols=226 Identities=24% Similarity=0.348 Sum_probs=176.1
Q ss_pred EEEEEeeEEEEecCC-cccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765 28 EIKFKDLTYTVSTGL-GFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--- 103 (606)
.|+++||++.++.+. .-...++.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP-SQGNVSWRGEPLAKLNR 81 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEeccccCh
Confidence 488999999984210 0000136799999999999999999999999999999999999776 59999999986431
Q ss_pred ---hhhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCC
Q psy13765 104 ---NAFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNP 176 (606)
Q Consensus 104 ---~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s 176 (606)
...++.++|++|++ .+++..|+.+.+... +... .+++..+.+ ..+.+++..-.+ .++|.+...+|
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~-~~~~-----~~~~~~~~~--~~~~~~l~~~gl~~~~~~~~~~~LS 153 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREP-LRHL-----LSLDKAERL--ARASEMLRAVDLDDSVLDKRPPQLS 153 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHH-HHhh-----ccCCHHHHH--HHHHHHHHHcCCChhHhhCCCccCC
Confidence 23467899999997 466778887665321 1100 012222221 122333333333 25688899999
Q ss_pred chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|+++|++. .+.++||++++|++|++++
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999999875 899999999976 5778999999999999999
Q ss_pred EcChhHHH
Q psy13765 256 QGATDQLV 263 (606)
Q Consensus 256 ~G~~~~~~ 263 (606)
.|+++++.
T Consensus 233 ~g~~~~~~ 240 (268)
T PRK10419 233 TQPVGDKL 240 (268)
T ss_pred eCChhhcc
Confidence 99988764
No 200
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-38 Score=315.80 Aligned_cols=200 Identities=24% Similarity=0.342 Sum_probs=160.7
Q ss_pred eeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-------hhh
Q psy13765 33 DLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-------INA 105 (606)
Q Consensus 33 nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-------~~~ 105 (606)
||+++|. ++.+ |+|+++++ |+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ...
T Consensus 5 ~l~~~~~--------~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~ 72 (214)
T cd03297 5 DIEKRLP--------DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP-DGGTIVLNGTVLFDSRKKINLPP 72 (214)
T ss_pred eeeEecC--------Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEecccccchhhhhh
Confidence 7888762 3444 99999999 99999999999999999999999876 5999999997642 123
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl 183 (606)
.++.++|++|++.+++.+|+.+.+... .... .. ..++++ .+++..-.+- ..|.+...+|+|||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~-~~~~--------~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LS~G~~qrv 140 (214)
T cd03297 73 QQRKIGLVFQQYALFPHLNVRENLAFG-LKRK--------RNREDRISV---DELLDLLGLDHLLNRYPAQLSGGEKQRV 140 (214)
T ss_pred HhhcEEEEecCCccCCCCCHHHHHHHH-HhhC--------CHHHHHHHH---HHHHHHcCCHhHhhcCcccCCHHHHHHH
Confidence 467899999999999989987765432 1100 11 112222 2333322221 45788899999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
.||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|+++..|
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 141 ALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999875 899999999976 467899999999999998765
No 201
>KOG0055|consensus
Probab=100.00 E-value=4.4e-37 Score=355.39 Aligned_cols=224 Identities=27% Similarity=0.456 Sum_probs=165.6
Q ss_pred CceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---
Q psy13765 25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR--- 101 (606)
Q Consensus 25 ~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~--- 101 (606)
..-.|+|+||+|+||.+ .+..+|+|+|+.|++||.+||+|||||||||++++|.+++.| .+|+|++||.+.
T Consensus 347 ~~g~ief~nV~FsYPsR-----pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP-~~G~V~idG~di~~~ 420 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSR-----PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP-TSGEVLIDGEDIRNL 420 (1228)
T ss_pred cccceEEEEEEecCCCC-----CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC-CCceEEEcCccchhc
Confidence 34579999999999754 356899999999999999999999999999999999999887 599999999864
Q ss_pred ChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCC-ccc--ccCCCCCCCCch
Q psy13765 102 NINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP-RVM--FLDEPTTSNPND 178 (606)
Q Consensus 102 ~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~-~~~--~~de~~~~~s~g 178 (606)
+.+.+|.++|.|.|+|.+|.. |+.|.+.. |.++.-...+ -+..|.+-|...+.+- +=+ ...|....||||
T Consensus 421 ~~~~lr~~iglV~QePvlF~~-tI~eNI~~-G~~dat~~~i-----~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGG 493 (1228)
T KOG0055|consen 421 NLKWLRSQIGLVSQEPVLFAT-TIRENIRY-GKPDATREEI-----EEAAKAANAHDFILKLPDGYDTLVGERGVQLSGG 493 (1228)
T ss_pred chHHHHhhcCeeeechhhhcc-cHHHHHhc-CCCcccHHHH-----HHHHHHccHHHHHHhhHHhhcccccCCCCCCChH
Confidence 457789999999999988764 44322211 2211000000 0111222222222211 100 112233335555
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
||||++|||||++||+||+||||||+||+.+...+.+.|.++. +|+|.|+++|+.+. + +.+|++++|++|++++.|+
T Consensus 494 QKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLSt-I-rnaD~I~v~~~G~IvE~G~ 570 (1228)
T KOG0055|consen 494 QKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLST-I-RNADKIAVMEEGKIVEQGT 570 (1228)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhh-h-hccCEEEEEECCEEEEecC
Confidence 5555556666666699999999999999999999999998765 48999999999874 5 6699999999999999999
Q ss_pred hhHHHH
Q psy13765 259 TDQLVN 264 (606)
Q Consensus 259 ~~~~~~ 264 (606)
++|+++
T Consensus 571 h~ELi~ 576 (1228)
T KOG0055|consen 571 HDELIA 576 (1228)
T ss_pred HHHHHh
Confidence 999986
No 202
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-38 Score=322.19 Aligned_cols=221 Identities=20% Similarity=0.280 Sum_probs=170.2
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--C--CCccEEEECCccCC
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--N--GVTGQILTNGHSRN 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~--~~~G~I~~~G~~~~ 102 (606)
+.-+++||++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ + +.+|+|.++|++..
T Consensus 4 ~~~~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 75 (251)
T PRK14244 4 IHASVKNLNLWYG--------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY 75 (251)
T ss_pred eEEEeeeEEEEEC--------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehH
Confidence 3456899999872 3579999999999999999999999999999999999864 2 25899999997642
Q ss_pred h-----hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCc-c-cccCCCCCC
Q psy13765 103 I-----NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPR-V-MFLDEPTTS 174 (606)
Q Consensus 103 ~-----~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~-~-~~~de~~~~ 174 (606)
. ..+++.++|++|++.+++. |+.+.+.. +.. ..+.. ...-+ ++++.-+.+.+.-.+ + -.+|.+...
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~-~~~-~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 149 (251)
T PRK14244 76 SVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAY-GPK-LHGLA---KNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFE 149 (251)
T ss_pred hcccchHHHhhhEEEEecCcccccC-CHHHHHHH-HHH-hcCCC---CCHHHHHHHHHHHHHHcCCCchhhhHhhcChhh
Confidence 1 2356789999999988886 77655432 110 00100 01111 222222222221111 1 135778889
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
+|+|||||+.||+||+++|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++. .+.+.||++++|++|+++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~ 227 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIV 227 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999864 899999999987 577899999999999999
Q ss_pred EEcChhHHH
Q psy13765 255 YQGATDQLV 263 (606)
Q Consensus 255 ~~G~~~~~~ 263 (606)
+.|+++++.
T Consensus 228 ~~~~~~~~~ 236 (251)
T PRK14244 228 EYNTTQEIF 236 (251)
T ss_pred EeCCHHHHh
Confidence 999988764
No 203
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=355.07 Aligned_cols=219 Identities=22% Similarity=0.331 Sum_probs=177.9
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~ 104 (606)
.|+++||+++| +++++|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++... .
T Consensus 4 ~i~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~ 74 (501)
T PRK10762 4 LLQLKGIDKAF--------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR-DAGSILYLGKEVTFNGPK 74 (501)
T ss_pred eEEEeeeEEEe--------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHH
Confidence 48999999987 235799999999999999999999999999999999999876 59999999986532 1
Q ss_pred -hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765 105 -AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKK 181 (606)
Q Consensus 105 -~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k 181 (606)
..++.++||+|++.+++.+|+.+.+.. ++... ...+.++..+ ++++. +++..-.+- .+|.+...+||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~-~~~~~--~~~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LSgG~~q 148 (501)
T PRK10762 75 SSQEAGIGIIHQELNLIPQLTIAENIFL-GREFV--NRFGRIDWKKMYAEAD---KLLARLNLRFSSDKLVGELSIGEQQ 148 (501)
T ss_pred HHHhCCEEEEEcchhccCCCcHHHHhhh-ccccc--cccCccCHHHHHHHHH---HHHHHcCCCCCccCchhhCCHHHHH
Confidence 234679999999999999999887643 21110 0001122222 33433 333333332 468899999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~ 261 (606)
|+.||+||+.+|++|+|||||+|||+.++..+.++|++++++|.|||++|||+. .+.++||++++|++|+++..|++++
T Consensus 149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCc
Confidence 999999999999999999999999999999999999999888999999999986 5778999999999999999998765
Q ss_pred H
Q psy13765 262 L 262 (606)
Q Consensus 262 ~ 262 (606)
+
T Consensus 228 ~ 228 (501)
T PRK10762 228 L 228 (501)
T ss_pred C
Confidence 4
No 204
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=3.9e-38 Score=319.65 Aligned_cols=230 Identities=21% Similarity=0.255 Sum_probs=171.1
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCccEEEECCccCC---hh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-NGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~-~~~~G~I~~~G~~~~---~~ 104 (606)
|+++||+++++ ++++|+|+|++|++||+++|+||||||||||+++|+|+.+ +..+|+|.++|.+.. ..
T Consensus 2 i~~~nl~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSVE--------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEeC--------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHH
Confidence 78999999873 3569999999999999999999999999999999999852 236899999997643 22
Q ss_pred hh-cccEEEEccCCCCCCCCcHHHHHHHcCCccccC-CccccCCh-HHHHHHHHHHHHhcCCcccccCCCCC-CCCchhh
Q psy13765 105 AF-RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN-TRSSQLSG-GQKKRLSIALELINNPRVMFLDEPTT-SNPNDQK 180 (606)
Q Consensus 105 ~~-~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~-~~~~~lSg-GqrqRv~ia~~L~~~~~~~~~de~~~-~~s~g~~ 180 (606)
.. ++.++|++|++.+++.++....+... ...... .....+.. +.+.++.-..+.+.-|+ -..+.+.. .+|+|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LS~G~~ 151 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTA-LNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPE-DLLTRSVNVGFSGGEK 151 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHh-hhhhhcccccccchHHHHHHHHHHHHHHcCCCh-hhcccCCCCCCCHHHH
Confidence 22 35699999999888877754443321 111000 00011111 22233332223222221 13455554 7999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cceeeeecCCcEEEEcCh
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM-FDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~~~~~G~~ 259 (606)
||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+... +|++++|++|++++.|++
T Consensus 152 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~ 230 (248)
T PRK09580 152 KRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDF 230 (248)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999999877899999999976 45555 899999999999999998
Q ss_pred hHHHHHHHhCC
Q psy13765 260 DQLVNYLSSVN 270 (606)
Q Consensus 260 ~~~~~~f~~~g 270 (606)
+.+ ..++..+
T Consensus 231 ~~~-~~~~~~~ 240 (248)
T PRK09580 231 TLV-KQLEEQG 240 (248)
T ss_pred HHH-HHHHhcC
Confidence 855 3334333
No 205
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-38 Score=320.88 Aligned_cols=219 Identities=25% Similarity=0.317 Sum_probs=171.6
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CC--CccEEEECCccCC
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--NG--VTGQILTNGHSRN 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~~--~~G~I~~~G~~~~ 102 (606)
..|+++||+++++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +. .+|+|.++|++..
T Consensus 4 ~~l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 75 (252)
T PRK14255 4 KIITSSDVHLFYG--------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIY 75 (252)
T ss_pred ceEEEEeEEEEEC--------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcc
Confidence 3589999999873 3579999999999999999999999999999999999854 32 4899999998652
Q ss_pred -----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH--HHHHHHHHHHhcCC-cc-cccCCCCC
Q psy13765 103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ--KKRLSIALELINNP-RV-MFLDEPTT 173 (606)
Q Consensus 103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq--rqRv~ia~~L~~~~-~~-~~~de~~~ 173 (606)
....++.++|++|++.+++ .|+.+.+... ... .+ ....+ ++++.-+.+.+.-. .+ -.++.+..
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~-~~~-~~-----~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~ 147 (252)
T PRK14255 76 APNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYG-LRL-AG-----VKDKAVLDEAVETSLKQAAIWDEVKDHLHESAL 147 (252)
T ss_pred cccccHHHhcCeEEEEECCCccCC-CcHHHHHHHH-HHH-cC-----CCCHHHHHHHHHHHHHHcCCccchhhHHhcCcc
Confidence 2345678999999998888 5886655431 100 00 11111 22222121111110 01 13578889
Q ss_pred CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
.+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+.||++++|++|++
T Consensus 148 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 225 (252)
T PRK14255 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNL 225 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999976 589999999986 57789999999999999
Q ss_pred EEEcChhHHH
Q psy13765 254 LYQGATDQLV 263 (606)
Q Consensus 254 ~~~G~~~~~~ 263 (606)
+..|++.++.
T Consensus 226 ~~~~~~~~~~ 235 (252)
T PRK14255 226 IEFADTKQMF 235 (252)
T ss_pred EEeCCHHHHh
Confidence 9999988764
No 206
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-38 Score=320.69 Aligned_cols=218 Identities=25% Similarity=0.331 Sum_probs=172.6
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CccEEEECCccCC-
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSRN- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~----~~G~I~~~G~~~~- 102 (606)
.|+++||+++++ ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++. .+|+|.++|.+..
T Consensus 4 ~l~~~~l~~~~~--------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 75 (251)
T PRK14249 4 KIKIRGVNFFYH--------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYS 75 (251)
T ss_pred eEEEEEEEEEEC--------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccc
Confidence 588999999873 356999999999999999999999999999999999997753 2699999997642
Q ss_pred ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH--HHHHHHHHHHhcCCc-c-cccCCCCCC
Q psy13765 103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ--KKRLSIALELINNPR-V-MFLDEPTTS 174 (606)
Q Consensus 103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq--rqRv~ia~~L~~~~~-~-~~~de~~~~ 174 (606)
...+++.++|++|++.+++. |+.+.+.. +.. . .+.+..+ ++++.-+...+.-.+ + -.+|.+...
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~-~~~-~-----~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 147 (251)
T PRK14249 76 PNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAF-GPR-M-----LGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLA 147 (251)
T ss_pred cccChHHhhceEEEEecCCccCcC-cHHHHHhh-HHH-h-----cCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCccc
Confidence 23457789999999998875 87665542 111 0 0111111 223322222221100 1 146889999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
+|+|||||+.|||||+.+|++++|||||+|||+.++..+.++|++++ +|+|||+++|+++ .+.+.||++++|++|+++
T Consensus 148 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i~ 225 (251)
T PRK14249 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDLV 225 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeEE
Confidence 99999999999999999999999999999999999999999999995 5899999999976 467899999999999999
Q ss_pred EEcChhHHH
Q psy13765 255 YQGATDQLV 263 (606)
Q Consensus 255 ~~G~~~~~~ 263 (606)
+.|+++++.
T Consensus 226 ~~~~~~~~~ 234 (251)
T PRK14249 226 EYGRTGEIF 234 (251)
T ss_pred EeCCHHHHH
Confidence 999988764
No 207
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-38 Score=322.49 Aligned_cols=220 Identities=22% Similarity=0.340 Sum_probs=174.8
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CccEEEECCccCC-
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSRN- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~----~~G~I~~~G~~~~- 102 (606)
.|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. .+|+|.++|++..
T Consensus 7 ~l~~~nl~~~~~--------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~ 78 (261)
T PRK14258 7 AIKVNNLSFYYD--------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYE 78 (261)
T ss_pred eEEEeeEEEEeC--------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhc
Confidence 589999999873 346999999999999999999999999999999999998752 3799999997642
Q ss_pred ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccC-ChHH-HHHHHHHHHHhcCCc-c-cccCCCCCC
Q psy13765 103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL-SGGQ-KKRLSIALELINNPR-V-MFLDEPTTS 174 (606)
Q Consensus 103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~l-SgGq-rqRv~ia~~L~~~~~-~-~~~de~~~~ 174 (606)
...+++.++|++|++.+++ .|+.+.+... .. . .+. ...+ ++++.-+.+.+.-.+ + -.++++...
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~-~~-~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 150 (261)
T PRK14258 79 RRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYG-VK-I-----VGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALD 150 (261)
T ss_pred cccchHHhhccEEEEecCCccCc-ccHHHHHHHH-HH-h-----cCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCccc
Confidence 1345678999999998888 7886655431 10 0 011 1112 223322222221100 0 146889999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecC---
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSG--- 250 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--- 250 (606)
+|+|||||+.||++|+++|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|++. .+.++||++++|++
T Consensus 151 LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~ 229 (261)
T PRK14258 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNEN 229 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCC
Confidence 999999999999999999999999999999999999999999999876 4899999999986 57899999999999
Q ss_pred --CcEEEEcChhHHHH
Q psy13765 251 --GQCLYQGATDQLVN 264 (606)
Q Consensus 251 --G~~~~~G~~~~~~~ 264 (606)
|++++.|+++++.+
T Consensus 230 ~~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 230 RIGQLVEFGLTKKIFN 245 (261)
T ss_pred cCceEEEeCCHHHHHh
Confidence 99999999998743
No 208
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-38 Score=322.87 Aligned_cols=216 Identities=24% Similarity=0.336 Sum_probs=172.5
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CccEEEECCccCC-
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSRN- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~----~~G~I~~~G~~~~- 102 (606)
.|+++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++. .+|+|.++|++..
T Consensus 7 ~l~~~~l~~~~~--------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 7 AIKVKDLSFYYN--------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred eEEEEEEEEEEC--------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence 589999999873 356999999999999999999999999999999999987642 4899999998652
Q ss_pred ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-----cccCCCC
Q psy13765 103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-----MFLDEPT 172 (606)
Q Consensus 103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-----~~~de~~ 172 (606)
...+++.++|++|++.+++ .|+.+.+... ... . +..+..+ ++++ .+++....+ -.+|.+.
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~-~~~-~----~~~~~~~~~~~~---~~~l~~~~l~~~l~~~~~~~~ 148 (259)
T PRK14260 79 PRININRLRRQIGMVFQRPNPFP-MSIYENVAYG-VRI-S----AKLPQADLDEIV---ESALKGAALWQEVKDKLNKSA 148 (259)
T ss_pred cccchHhhhhheEEEecccccCC-ccHHHHHHHH-HHH-h----cCCCHHHHHHHH---HHHHHHcCCcchhhhHhcCCc
Confidence 1345678999999999888 7887665431 110 0 0112222 1222 122222111 1468888
Q ss_pred CCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec---
Q psy13765 173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS--- 249 (606)
Q Consensus 173 ~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~--- 249 (606)
..+|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.++||++++|+
T Consensus 149 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~ 226 (259)
T PRK14260 149 LGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDE 226 (259)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccC
Confidence 99999999999999999999999999999999999999999999999975 699999999987 5779999999997
Q ss_pred --CCcEEEEcChhHHH
Q psy13765 250 --GGQCLYQGATDQLV 263 (606)
Q Consensus 250 --~G~~~~~G~~~~~~ 263 (606)
+|++++.|+++++.
T Consensus 227 ~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 227 SRIGQMVEFGVTTQIF 242 (259)
T ss_pred CCCceEEEeCCHHHHh
Confidence 59999999998874
No 209
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-38 Score=324.57 Aligned_cols=219 Identities=22% Similarity=0.274 Sum_probs=171.8
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--C--CCccEEEECCccCC
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--N--GVTGQILTNGHSRN 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~--~~~G~I~~~G~~~~ 102 (606)
..++++|+++.|+ ++.+|+|+|++|++||+++|+|+||||||||+++|+|+.+ + +.+|+|.++|++..
T Consensus 23 ~~l~~~~l~~~~~--------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 94 (271)
T PRK14238 23 VVFDTQNLNLWYG--------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF 94 (271)
T ss_pred eEEEEeeeEEEEC--------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcc
Confidence 3699999999873 3569999999999999999999999999999999999875 2 26899999998652
Q ss_pred -----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HH-HHHHHHHHHHhc-CCcc-cccCCCCC
Q psy13765 103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQ-KKRLSIALELIN-NPRV-MFLDEPTT 173 (606)
Q Consensus 103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-Gq-rqRv~ia~~L~~-~~~~-~~~de~~~ 173 (606)
...+++.++|++|++.+++. |+.+.+... .. . .+.+. .. ++++.-+..... ..++ -.+|++..
T Consensus 95 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~-~~-~-----~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 166 (271)
T PRK14238 95 DKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYG-PK-I-----HGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAY 166 (271)
T ss_pred cccccHHHHhhhEEEEecCCccccc-cHHHHHHHH-HH-h-----cCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcc
Confidence 23456789999999988874 886655431 10 0 01111 11 122211111000 0011 13578899
Q ss_pred CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
.+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.++||++++|++|++
T Consensus 167 ~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i 244 (271)
T PRK14238 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYV 244 (271)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999976 799999999976 46789999999999999
Q ss_pred EEEcChhHHH
Q psy13765 254 LYQGATDQLV 263 (606)
Q Consensus 254 ~~~G~~~~~~ 263 (606)
+..|+++++.
T Consensus 245 ~~~g~~~~~~ 254 (271)
T PRK14238 245 NEYDDTDKIF 254 (271)
T ss_pred EEeCCHHHHH
Confidence 9999988763
No 210
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-38 Score=354.49 Aligned_cols=221 Identities=21% Similarity=0.305 Sum_probs=177.6
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~ 104 (606)
.|+++|++++| +++.+|+|+||++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++... .
T Consensus 5 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~i~~~~~~ 75 (510)
T PRK09700 5 YISMAGIGKSF--------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP-TKGTITINNINYNKLDHK 75 (510)
T ss_pred eEEEeeeEEEc--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC-CccEEEECCEECCCCCHH
Confidence 58999999987 335799999999999999999999999999999999999876 59999999986532 1
Q ss_pred h-hcccEEEEccCCCCCCCCcHHHHHHHcCCccccC-CccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765 105 A-FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN-TRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPNDQK 180 (606)
Q Consensus 105 ~-~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~-~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~ 180 (606)
. .++.++||+|++.+++.+|+.+.+.. +...... .....++.. .++|+. +++..-.+- ..|.+...||||||
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~gl~~~~~~~~~~LSgG~~ 151 (510)
T PRK09700 76 LAAQLGIGIIYQELSVIDELTVLENLYI-GRHLTKKVCGVNIIDWREMRVRAA---MMLLRVGLKVDLDEKVANLSISHK 151 (510)
T ss_pred HHHHCCeEEEeecccccCCCcHHHHhhh-ccccccccccccccCHHHHHHHHH---HHHHHcCCCCCcccchhhCCHHHH
Confidence 1 34579999999999999999776642 2211100 000011221 223333 333332332 46889999999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
|||.||+||+.+|++|+|||||+|||+.++..+.++|++++++|+|||++||++. .+..+||++++|++|++++.|+++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecchh
Confidence 9999999999999999999999999999999999999999888999999999976 577899999999999999999987
Q ss_pred HH
Q psy13765 261 QL 262 (606)
Q Consensus 261 ~~ 262 (606)
++
T Consensus 231 ~~ 232 (510)
T PRK09700 231 DV 232 (510)
T ss_pred hC
Confidence 64
No 211
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=3.7e-38 Score=320.80 Aligned_cols=201 Identities=22% Similarity=0.410 Sum_probs=160.5
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR 107 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~ 107 (606)
.++++||++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++| +
T Consensus 4 ~l~~~~l~~~~~--------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p-~~G~i~~~~--------~ 66 (251)
T PRK09544 4 LVSLENVSVSFG--------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP-DEGVIKRNG--------K 66 (251)
T ss_pred EEEEeceEEEEC--------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECC--------c
Confidence 589999999873 35699999999999999999999999999999999999876 599999987 2
Q ss_pred ccEEEEccCCCCCCCC--cHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHH
Q psy13765 108 RVSCYIQQDDRLQPLL--TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~l--tv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~ 184 (606)
..++|++|++.+++.+ |+.+.+. +.. ..+ ++++.-+.+.+ .+- ..|.+...+|+|||||+.
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~---~~~-------~~~---~~~~~~~l~~~---gl~~~~~~~~~~LSgGq~qrv~ 130 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLR---LRP-------GTK---KEDILPALKRV---QAGHLIDAPMQKLSGGETQRVL 130 (251)
T ss_pred cCEEEeccccccccccChhHHHHHh---ccc-------ccc---HHHHHHHHHHc---CChHHHhCChhhCCHHHHHHHH
Confidence 4699999998887764 4433321 110 011 22222222222 221 356778888888888888
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.+.||++++|++ +++..|+++++.
T Consensus 131 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 131 LARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPEVVS 208 (251)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHHHHh
Confidence 999999999999999999999999999999999999876 899999999987 57789999999964 799999988763
No 212
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-38 Score=343.79 Aligned_cols=202 Identities=29% Similarity=0.447 Sum_probs=163.6
Q ss_pred CCCCceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc-
Q psy13765 22 ETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS- 100 (606)
Q Consensus 22 ~~~~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~- 100 (606)
...+++.++.+|+++.|++ ++++++|+|+++++|+.+||+|+||||||||+++|+|+.++ .+|+|.+||.+
T Consensus 314 ~~~~~~ei~~~~l~~~y~~-------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~-~~G~I~vng~~l 385 (559)
T COG4988 314 ANEPPIEISLENLSFRYPD-------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP-TQGEIRVNGIDL 385 (559)
T ss_pred ccCCCceeeecceEEecCC-------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC-CCceEEECCccc
Confidence 3345678888899999853 24899999999999999999999999999999999999887 69999999975
Q ss_pred --CChhhhcccEEEEccCCCCCCCCcH---------------HHHHHHcCCccccC----------CccccCChHHHHHH
Q psy13765 101 --RNINAFRRVSCYIQQDDRLQPLLTI---------------ENVMSLLGLDESQN----------TRSSQLSGGQKKRL 153 (606)
Q Consensus 101 --~~~~~~~~~~~yv~Q~~~l~~~ltv---------------~~~l~~~gl~~~~~----------~~~~~lSgGqrqRv 153 (606)
.+...++++++||+|++.+++..-- .++++..|+.+..+ +...+|||||+|||
T Consensus 386 ~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 386 RDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred cccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHH
Confidence 4557899999999999999875322 23344444433322 22334566665555
Q ss_pred HHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q psy13765 154 SIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQ 233 (606)
Q Consensus 154 ~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~ 233 (606)
+ +||||+++++++++||||++||.++.+.+.+.|.+++++ +|++++||+
T Consensus 466 a------------------------------LARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHr 514 (559)
T COG4988 466 A------------------------------LARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHR 514 (559)
T ss_pred H------------------------------HHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcC
Confidence 5 555555559999999999999999999999999999874 999999999
Q ss_pred CchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 234 PSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 234 ~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
+.. ..-+|+|++|++|+++..|.++++.+
T Consensus 515 l~~--~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 515 LED--AADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred hHH--HhcCCEEEEecCCceeccCCHHHHhh
Confidence 763 47899999999999999999999864
No 213
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-38 Score=320.41 Aligned_cols=206 Identities=22% Similarity=0.370 Sum_probs=177.5
Q ss_pred eEEEEEeeEEEEecCCc---------c-------cccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCC
Q psy13765 27 IEIKFKDLTYTVSTGLG---------F-------KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGV 90 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~---------~-------~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~ 90 (606)
..|+++|+.+-+..+.. . +.+...-++|+|++++.||+..|||-||||||||+++|.++..| .
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep-t 81 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP-T 81 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC-C
Confidence 56899999998864421 0 01223458999999999999999999999999999999999887 5
Q ss_pred ccEEEECCccC---Ch---hhh-cccEEEEccCCCCCCCCcH----------------------HHHHHHcCCccccCCc
Q psy13765 91 TGQILTNGHSR---NI---NAF-RRVSCYIQQDDRLQPLLTI----------------------ENVMSLLGLDESQNTR 141 (606)
Q Consensus 91 ~G~I~~~G~~~---~~---~~~-~~~~~yv~Q~~~l~~~ltv----------------------~~~l~~~gl~~~~~~~ 141 (606)
.|+|+++|.++ +. .++ ++.++.|||+..|+|..|| .+.++..||+.+.+++
T Consensus 82 ~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~y 161 (386)
T COG4175 82 RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKY 161 (386)
T ss_pred CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcC
Confidence 99999999864 22 233 4679999999999999997 4567788999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy13765 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS 221 (606)
Q Consensus 142 ~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~ 221 (606)
+.+|||||||||.+||||.++ |+||++|||+|+|||--+.++.+-|.+|.
T Consensus 162 p~eLSGGMqQRVGLARAla~~------------------------------~~IlLMDEaFSALDPLIR~~mQdeLl~Lq 211 (386)
T COG4175 162 PNELSGGMQQRVGLARALAND------------------------------PDILLMDEAFSALDPLIRTEMQDELLELQ 211 (386)
T ss_pred cccccchHHHHHHHHHHHccC------------------------------CCEEEecCchhhcChHHHHHHHHHHHHHH
Confidence 999999999999877776666 99999999999999999999999999997
Q ss_pred hC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 222 QQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 222 ~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
++ ++|||++|||.+ +.+++-|||.+|++|+++..|+|+|++.
T Consensus 212 ~~l~KTIvFitHDLd-EAlriG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 212 AKLKKTIVFITHDLD-EALRIGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred HHhCCeEEEEecCHH-HHHhccceEEEecCCeEEEeCCHHHHHc
Confidence 75 899999999987 4679999999999999999999999974
No 214
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.2e-38 Score=318.25 Aligned_cols=203 Identities=25% Similarity=0.374 Sum_probs=162.0
Q ss_pred cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CccEEEECCccCChhhh-cccEEEEccCCC--CCCCCc
Q psy13765 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG---VTGQILTNGHSRNINAF-RRVSCYIQQDDR--LQPLLT 124 (606)
Q Consensus 51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~---~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~--l~~~lt 124 (606)
+++|+|+++++||+++|+||||||||||+|+|+|+.++. .+|+|.++|++...... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 589999999999999999999999999999999998762 58999999987643333 357999999985 566788
Q ss_pred HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc----cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeC
Q psy13765 125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV----MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200 (606)
Q Consensus 125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~----~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDE 200 (606)
+.+.+... ... . +..+.-.++++. +++..-++ -..|++...+|+||||||.||+||+++|++|+|||
T Consensus 81 ~~~~~~~~-~~~-~----~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 81 MGNHAIET-LRS-L----GKLSKQARALIL---EALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred HHHHHHHH-HHH-c----CccHHHHHHHHH---HHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 86654321 100 0 011211233332 23332223 14678889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 201 PTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 201 PTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
||+|||+.++..+.+.|++++++ |+|||+++|+++ .+..++|++++|++|+++..|+++++.
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999875 899999999987 577899999999999999999988774
No 215
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2.7e-38 Score=304.02 Aligned_cols=170 Identities=30% Similarity=0.515 Sum_probs=146.7
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA 105 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~ 105 (606)
++++|++++++. .++.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ...
T Consensus 1 i~~~~l~~~~~~------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~ 73 (173)
T cd03246 1 LEVENVSFRYPG------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGADISQWDPNE 73 (173)
T ss_pred CEEEEEEEEcCC------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCEEcccCCHHH
Confidence 468999998732 225699999999999999999999999999999999999876 5999999997643 345
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I 185 (606)
+++.++|++|++.+++. |+.+.+ ||||||||++||++|+.+
T Consensus 74 ~~~~i~~~~q~~~~~~~-tv~~~l---------------LS~G~~qrv~la~al~~~----------------------- 114 (173)
T cd03246 74 LGDHVGYLPQDDELFSG-SIAENI---------------LSGGQRQRLGLARALYGN----------------------- 114 (173)
T ss_pred HHhheEEECCCCccccC-cHHHHC---------------cCHHHHHHHHHHHHHhcC-----------------------
Confidence 57789999999988874 876644 888888888876666666
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+ +.||++++|++|++
T Consensus 115 -------p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 115 -------PRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred -------CCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 9999999999999999999999999999878999999999986 45 68999999999974
No 216
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.3e-38 Score=344.00 Aligned_cols=226 Identities=23% Similarity=0.357 Sum_probs=167.7
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CccEEEECCccC---
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG---VTGQILTNGHSR--- 101 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~---~~G~I~~~G~~~--- 101 (606)
.|+++||+++|... .+...+++||||++++||++||+|.|||||||+.++|.|+.+++ .+|+|.++|++.
T Consensus 5 lL~V~nL~v~~~~~----~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 5 LLEVENLTVEFATD----GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred eEEEeceEEEEecC----CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC
Confidence 69999999998643 23357999999999999999999999999999999999998764 489999999753
Q ss_pred Ch---hh-hcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHHHH-HHHHHHHHhcCCcccccCCCCCC
Q psy13765 102 NI---NA-FRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK-RLSIALELINNPRVMFLDEPTTS 174 (606)
Q Consensus 102 ~~---~~-~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrq-Rv~ia~~L~~~~~~~~~de~~~~ 174 (606)
+. .. ..+.++||||++ .+.|.+|+.+-+...-..|. ..++-|.+ |+.-....+.-|+-.-.|.-+-.
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~------~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPhe 154 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG------KGSRAEARKRAVELLEQVGLPDPERRDRYPHQ 154 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc------cccHHHHHHHHHHHHHHcCCCChhhhccCCcc
Confidence 22 12 236799999997 56777887443332111110 01122221 11111222222211111344445
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
+|||||||+.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|++|||+. .+.++||||++|.+|++
T Consensus 155 LSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~i 233 (539)
T COG1123 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKGEI 233 (539)
T ss_pred cCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECCEE
Confidence 566666666677777777999999999999999999999999999986 4999999999987 57899999999999999
Q ss_pred EEEcChhHHHH
Q psy13765 254 LYQGATDQLVN 264 (606)
Q Consensus 254 ~~~G~~~~~~~ 264 (606)
++.|+++++.+
T Consensus 234 VE~G~~~~i~~ 244 (539)
T COG1123 234 VETGPTEEILS 244 (539)
T ss_pred EEecCHHHHHh
Confidence 99999999976
No 217
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-38 Score=322.01 Aligned_cols=218 Identities=23% Similarity=0.294 Sum_probs=171.6
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC-
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~- 102 (606)
.|+++||+++|+ ++++|+|+|++|++||+++|+||||||||||+|+|+|+..+ ..+|+|.++|++..
T Consensus 10 ~l~i~~v~~~~~--------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 10 VLRTENLNVYYG--------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred EEEEeeeEEEEC--------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 699999999872 35699999999999999999999999999999999998642 25899999997652
Q ss_pred ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCC-cc-cccCCCCCCCC
Q psy13765 103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP-RV-MFLDEPTTSNP 176 (606)
Q Consensus 103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~-~~-~~~de~~~~~s 176 (606)
...+++.++|++|++.+++. |+.+.+.. +... . ....-.++++.-+.+.+.-. .+ -..+.+...+|
T Consensus 82 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~-~~~~--~----~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 153 (264)
T PRK14243 82 PDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAY-GARI--N----GYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLS 153 (264)
T ss_pred cccChHHHhhhEEEEccCCccccc-cHHHHHHh-hhhh--c----CcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCC
Confidence 23456789999999988874 87665532 1110 0 01111122222122221110 00 13578889999
Q ss_pred chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec-------
Q psy13765 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS------- 249 (606)
Q Consensus 177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~------- 249 (606)
+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.++||++++|+
T Consensus 154 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~ 231 (264)
T PRK14243 154 GGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGG 231 (264)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999976 589999999976 5789999999998
Q ss_pred --CCcEEEEcChhHHH
Q psy13765 250 --GGQCLYQGATDQLV 263 (606)
Q Consensus 250 --~G~~~~~G~~~~~~ 263 (606)
+|++++.|+++++.
T Consensus 232 ~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 232 GRYGYLVEFDRTEKIF 247 (264)
T ss_pred ccCceEEEeCCHHHHH
Confidence 79999999998875
No 218
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-38 Score=324.95 Aligned_cols=219 Identities=21% Similarity=0.284 Sum_probs=173.5
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--C--CCccEEEECCccCC
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--N--GVTGQILTNGHSRN 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~--~~~G~I~~~G~~~~ 102 (606)
..|+++||++.|+ ++.+|+|+|++|++||+++|+||||||||||+++|+|+.+ + ..+|+|.++|.+..
T Consensus 38 ~~l~~~~l~~~~~--------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 38 PHVVAKNFSIYYG--------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred eEEEEeeeEEEEC--------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 4689999999873 3469999999999999999999999999999999999753 2 25899999997642
Q ss_pred h-----hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCC-h-HHHHHHHHHHHHhcCC-cc-cccCCCCC
Q psy13765 103 I-----NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLS-G-GQKKRLSIALELINNP-RV-MFLDEPTT 173 (606)
Q Consensus 103 ~-----~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lS-g-GqrqRv~ia~~L~~~~-~~-~~~de~~~ 173 (606)
. ..+++.++|++|++.+++. |+.+.+.. +... .++. . ..++++.-+.+.+.-. .+ -.+|.+..
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~-~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 181 (286)
T PRK14275 110 GKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAY-GPRL------HGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNAL 181 (286)
T ss_pred hcccchHHhhhcEEEECCCCCCCcc-CHHHHHHh-HHHh------cCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChh
Confidence 1 2356789999999988875 88776653 2110 0111 1 1233433222222110 01 14588899
Q ss_pred CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
.||||||||+.||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|++
T Consensus 182 ~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i 259 (286)
T PRK14275 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVL 259 (286)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 689999999987 46789999999999999
Q ss_pred EEEcChhHHH
Q psy13765 254 LYQGATDQLV 263 (606)
Q Consensus 254 ~~~G~~~~~~ 263 (606)
+..|+++++.
T Consensus 260 ~~~g~~~~~~ 269 (286)
T PRK14275 260 VEHAPTAQLF 269 (286)
T ss_pred EEeCCHHHHH
Confidence 9999988864
No 219
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.5e-38 Score=315.35 Aligned_cols=207 Identities=26% Similarity=0.465 Sum_probs=159.6
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~ 104 (606)
.++++|+++.++. ..+.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ..
T Consensus 2 ~l~~~~l~~~~~~------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~ 74 (220)
T cd03245 2 RIEFRNVSFSYPN------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP-TSGSVLLDGTDIRQLDPA 74 (220)
T ss_pred eEEEEEEEEEcCC------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCeEEECCEEhHHCCHH
Confidence 3789999998731 225699999999999999999999999999999999999876 5999999997642 23
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHH------Hhc-CCcc--cccCCCCCCC
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE------LIN-NPRV--MFLDEPTTSN 175 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~------L~~-~~~~--~~~de~~~~~ 175 (606)
..++.++|++|++.+++ .|+.+.+... ... .+ ++++.-..+ ++. .|.- .-..++...+
T Consensus 75 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~-~~~--------~~---~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~L 141 (220)
T cd03245 75 DLRRNIGYVPQDVTLFY-GTLRDNITLG-APL--------AD---DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGL 141 (220)
T ss_pred HHHhhEEEeCCCCcccc-chHHHHhhcC-CCC--------CC---HHHHHHHHHHcCcHHHHHhccccccceecCCCccC
Confidence 45678999999998887 5876655331 110 01 112111111 111 1100 0012345689
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
|||||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++. .+ ++||++++|++|++++
T Consensus 142 SgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 142 SGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVA 218 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEee
Confidence 999999999999999999999999999999999999999999999764 89999999986 34 7999999999999986
Q ss_pred Ec
Q psy13765 256 QG 257 (606)
Q Consensus 256 ~G 257 (606)
.|
T Consensus 219 ~~ 220 (220)
T cd03245 219 DG 220 (220)
T ss_pred cC
Confidence 54
No 220
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.2e-37 Score=316.78 Aligned_cols=224 Identities=22% Similarity=0.252 Sum_probs=170.3
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC--CCCCccEEEECCccCCh--
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR--SNGVTGQILTNGHSRNI-- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~--~~~~~G~I~~~G~~~~~-- 103 (606)
.|+++||++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|.+...
T Consensus 7 ~l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-~~G~i~~~g~~~~~~~ 77 (252)
T CHL00131 7 ILEIKNLHASVN--------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-LEGDILFKGESILDLE 77 (252)
T ss_pred eEEEEeEEEEeC--------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC-CCceEEECCEEcccCC
Confidence 699999999873 346999999999999999999999999999999999973 34 68999999976432
Q ss_pred -hhhcc-cEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCC-CCCchh
Q psy13765 104 -NAFRR-VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTT-SNPNDQ 179 (606)
Q Consensus 104 -~~~~~-~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~-~~s~g~ 179 (606)
...++ .++|++|++.+++.+|+.+.+...--..............+ ++++.-+.+.+.-++ ..+|.+.. .+||||
T Consensus 78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgG~ 156 (252)
T CHL00131 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP-SFLSRNVNEGFSGGE 156 (252)
T ss_pred hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch-hhhccccccCCCHHH
Confidence 22233 48899999999999998776543210000000001111111 233332222222110 13566665 599999
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cceeeeecCCcEEEEcC
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM-FDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~~~~~G~ 258 (606)
|||+.||+||+.+|++++|||||+|||+.++..+.++|++++++|+|||++||+++. +... +|++++|++|++++.|+
T Consensus 157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~G~i~~~~~ 235 (252)
T CHL00131 157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQNGKIIKTGD 235 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeCCEEEEecC
Confidence 999999999999999999999999999999999999999998779999999999764 5455 89999999999999999
Q ss_pred hhHH
Q psy13765 259 TDQL 262 (606)
Q Consensus 259 ~~~~ 262 (606)
++.+
T Consensus 236 ~~~~ 239 (252)
T CHL00131 236 AELA 239 (252)
T ss_pred hhhh
Confidence 8843
No 221
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-38 Score=319.65 Aligned_cols=219 Identities=26% Similarity=0.330 Sum_probs=172.0
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--C--CccEEEECCccCC-
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--G--VTGQILTNGHSRN- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~--~~G~I~~~G~~~~- 102 (606)
.|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+..+ . .+|+|.++|++..
T Consensus 6 ~i~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 6 ILSTKNLNLWYG--------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred eEEEeeeEEEEC--------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 689999999873 35799999999999999999999999999999999998642 1 3799999998653
Q ss_pred ----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcC-Ccc-cccCCCCCCC
Q psy13765 103 ----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINN-PRV-MFLDEPTTSN 175 (606)
Q Consensus 103 ----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~-~~~-~~~de~~~~~ 175 (606)
....++.++|++|++.+++. |+.+.+.. +... .+. ....+ ++++.-+.+.+.- +.+ -.+|++...+
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~-~~~~-~~~----~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 150 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAY-GPRI-HGE----KNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSL 150 (253)
T ss_pred cccchhhhhceEEEEecCCccCcc-cHHHHHHh-hHHh-cCC----CCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhC
Confidence 23456779999999998885 88776653 2110 010 11111 2232211111110 011 1368889999
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++|++|+++.
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14261 151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIE 228 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999976 589999999976 4678999999999999999
Q ss_pred EcChhHHH
Q psy13765 256 QGATDQLV 263 (606)
Q Consensus 256 ~G~~~~~~ 263 (606)
.|+++++.
T Consensus 229 ~g~~~~~~ 236 (253)
T PRK14261 229 FDKTTQIF 236 (253)
T ss_pred cCCHHHHH
Confidence 99998764
No 222
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=5.2e-38 Score=362.53 Aligned_cols=215 Identities=26% Similarity=0.425 Sum_probs=167.4
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
-.|+++||+|+|+. .++++|+|+|++|++||.+||+||||||||||+|+|+|+++| .+|+|.+||.+. +.
T Consensus 450 ~~I~~~nvsf~Y~~------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~ 522 (686)
T TIGR03797 450 GAIEVDRVTFRYRP------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP-ESGSVFYDGQDLAGLDV 522 (686)
T ss_pred ceEEEEEEEEEcCC------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEEcCcCCH
Confidence 36999999999852 236799999999999999999999999999999999999887 599999999864 45
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCcc--cccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRV--MFLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~--~~~de~~~~~s~ 177 (606)
+.+|+.+|||+|++.+++. |+.|.+.. +-. .+-.+-.++ .+...+...|+= ..++|....|||
T Consensus 523 ~~lr~~i~~v~Q~~~lf~g-TI~eNi~~-~~~---------~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG 591 (686)
T TIGR03797 523 QAVRRQLGVVLQNGRLMSG-SIFENIAG-GAP---------LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG 591 (686)
T ss_pred HHHHhccEEEccCCccCcc-cHHHHHhc-CCC---------CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 7789999999999999875 65444332 100 111111111 111111111211 123455567788
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||++|||||+++|++|+||||||+||+.++.++.+.|+++ ++|+|+++|+++. .+.+|+|++|++|++++.|
T Consensus 592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~--i~~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST--IRNADRIYVLDAGRVVQQG 666 (686)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH--HHcCCEEEEEECCEEEEEC
Confidence 8888888888888889999999999999999999999999876 5899999999863 4779999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++.+
T Consensus 667 ~~~~Ll~ 673 (686)
T TIGR03797 667 TYDELMA 673 (686)
T ss_pred CHHHHHh
Confidence 9998864
No 223
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.8e-38 Score=343.41 Aligned_cols=229 Identities=24% Similarity=0.438 Sum_probs=183.2
Q ss_pred ceEEEEEeeEEEEecCCcc---cccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC
Q psy13765 26 RIEIKFKDLTYTVSTGLGF---KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN 102 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~---~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~ 102 (606)
...++++||++.|..+.+. ..+...+++||||++++||++||+|+||||||||.++|+|+.+| .+|+|.++|.+.+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P-~~G~i~~~g~~~~ 356 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP-SSGSIIFDGQDLD 356 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEeCcccc
Confidence 4468999999999753211 12446799999999999999999999999999999999999887 6999999997621
Q ss_pred -----hhhhcccEEEEccCC--CCCCCCcHHHHHHH-cCCccccCCccccCChHHH-HHHHHHHHHhcCCcccccCCCCC
Q psy13765 103 -----INAFRRVSCYIQQDD--RLQPLLTIENVMSL-LGLDESQNTRSSQLSGGQK-KRLSIALELINNPRVMFLDEPTT 173 (606)
Q Consensus 103 -----~~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~-~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~~~~de~~~ 173 (606)
....++.+-+|+||+ .+.|.+||.+++.. +.... ..++.++ +|+.-..+++.-|.- +++.-+.
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~-------~~~~~~~~~rv~~ll~~VgL~~~-~l~ryP~ 428 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHG-------GGSGAERRARVAELLELVGLPPE-FLDRYPH 428 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhc-------ccchHHHHHHHHHHHHHcCCCHH-HHhcCch
Confidence 234566788888876 58899999777654 22111 1223332 345544444443321 5677777
Q ss_pred CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
.+|||||||++|||||+.+|++|++|||||.||+..+.+++++|+++.++ |.|.+++|||.. .+..+||||++|.+|+
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~ 507 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGR 507 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCe
Confidence 88888999999999999999999999999999999999999999999886 999999999987 5889999999999999
Q ss_pred EEEEcChhHHHH
Q psy13765 253 CLYQGATDQLVN 264 (606)
Q Consensus 253 ~~~~G~~~~~~~ 264 (606)
+++.|+.+++.+
T Consensus 508 iVE~G~~~~v~~ 519 (539)
T COG1123 508 IVEEGPTEKVFE 519 (539)
T ss_pred EEEeCCHHHHhc
Confidence 999999888754
No 224
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=4e-38 Score=314.24 Aligned_cols=210 Identities=26% Similarity=0.396 Sum_probs=165.8
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----- 103 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----- 103 (606)
++++|+++.++.+ .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...
T Consensus 2 l~~~~l~~~~~~~----~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~ 76 (220)
T TIGR02982 2 ISIRNLNHYYGHG----SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV-QEGSLKVLGQELYGASEKE 76 (220)
T ss_pred EEEEEEEEEccCC----CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEhHhcCHhH
Confidence 6889999987421 1236799999999999999999999999999999999999876 59999999986531
Q ss_pred -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765 104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKK 181 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k 181 (606)
...++.++|++|++.+++.+|+.+.+...... .. ... .++...-+.+++..-.+- ..+.+...+|+||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~---~~---~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~q 148 (220)
T TIGR02982 77 LVQLRRNIGYIFQAHNLLGFLTARQNVQMALEL---QP---NLS--YQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQ 148 (220)
T ss_pred HHHHHhheEEEcCChhhcCCCCHHHHHHHHHHh---cc---CCC--HHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHH
Confidence 13567899999999999988987766542110 00 011 111111222333332332 457788889999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
|+.||+||+++|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|+++ +.+.||++++|++|++
T Consensus 149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999986 4899999999975 3589999999999975
No 225
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=3.2e-38 Score=311.29 Aligned_cols=197 Identities=25% Similarity=0.396 Sum_probs=156.5
Q ss_pred EEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h----
Q psy13765 31 FKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I---- 103 (606)
Q Consensus 31 ~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~---- 103 (606)
++||++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.. .
T Consensus 1 i~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~ 71 (206)
T TIGR03608 1 LKNISKKFG--------DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF-DSGQVYLNGKETPPLNSKKAS 71 (206)
T ss_pred CcceEEEEC--------CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccchhhHH
Confidence 368888762 35699999999999999999999999999999999999876 5999999998632 1
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-cccCCCCCCCCchhhh
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-MFLDEPTTSNPNDQKK 181 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~k 181 (606)
...++.++|++|++.+++..|+.+.+... ... .+....+ ++++. +++..-.+ -..|.+...+|+||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~~~~~-~~~------~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~lS~G~~q 141 (206)
T TIGR03608 72 KFRREKLGYLFQNFALIENETVEENLDLG-LKY------KKLSKKEKREKKK---EALEKVGLNLKLKQKIYELSGGEQQ 141 (206)
T ss_pred HHHHhCeeEEecchhhccCCcHHHHHHHH-HHh------cCCCHHHHHHHHH---HHHHHcCchhhhcCChhhCCHHHHH
Confidence 13457899999999999989997765541 110 0111111 23332 23332222 1457888899999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 248 (606)
|+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++. . .+.||++++|
T Consensus 142 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~-~~~~d~i~~l 206 (206)
T TIGR03608 142 RVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE-V-AKQADRVIEL 206 (206)
T ss_pred HHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HhhcCEEEeC
Confidence 999999999999999999999999999999999999999877999999999986 3 4689999875
No 226
>KOG0057|consensus
Probab=100.00 E-value=1.8e-38 Score=338.82 Aligned_cols=207 Identities=25% Similarity=0.440 Sum_probs=160.0
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
-.|+|+||+++|. .++++|+++||+|++||-+||+|+|||||||++|+|.++.. .+|+|++||+++ +.
T Consensus 350 ~~I~F~dV~f~y~-------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~ 420 (591)
T KOG0057|consen 350 GSIEFDDVHFSYG-------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSL 420 (591)
T ss_pred CcEEEEeeEEEeC-------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhCh
Confidence 3599999999984 23459999999999999999999999999999999999876 599999999864 45
Q ss_pred hhhcccEEEEccCCCCCCCCcH------------HHH---HHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccccc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTI------------ENV---MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFL 168 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv------------~~~---l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~ 168 (606)
+.+|+.|||||||..+|.+.-. +++ .+..|+.+...+.+++. ...|
T Consensus 421 ~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY----~T~V--------------- 481 (591)
T KOG0057|consen 421 ESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGY----QTLV--------------- 481 (591)
T ss_pred HHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccc----hhhH---------------
Confidence 7889999999999998875321 333 33445544322222211 1100
Q ss_pred CCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765 169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248 (606)
Q Consensus 169 de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 248 (606)
.|....|||||||||+||||+++||+|+++|||||.||+.+..++++.+++ ...|+|+|++.|+.+ +...||+|+++
T Consensus 482 GerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~--ll~~~DkI~~l 558 (591)
T KOG0057|consen 482 GERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLD--LLKDFDKIIVL 558 (591)
T ss_pred hhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecch--hHhcCCEEEEE
Confidence 122233444444444455555555999999999999999999999999998 345899999999976 45889999999
Q ss_pred cCCcEEEEcChhHHHH
Q psy13765 249 SGGQCLYQGATDQLVN 264 (606)
Q Consensus 249 ~~G~~~~~G~~~~~~~ 264 (606)
++|++...|+.+|++.
T Consensus 559 ~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 559 DNGTVKEYGTHSELLA 574 (591)
T ss_pred ECCeeEEeccHHHHhh
Confidence 9999999999999876
No 227
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.4e-38 Score=323.91 Aligned_cols=215 Identities=20% Similarity=0.286 Sum_probs=166.1
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~ 104 (606)
.|+++|++++|+. +.+.+|+|+|++|++||+++|+||||||||||+++|+|+.+ .+|+|.++|.+. +..
T Consensus 2 ~i~~~nls~~~~~------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~g~~i~~~~~~ 73 (275)
T cd03289 2 QMTVKDLTAKYTE------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQ 73 (275)
T ss_pred eEEEEEEEEEeCC------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEhhhCCHH
Confidence 4789999999842 23469999999999999999999999999999999999976 489999999864 335
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCcc--cccCCCCCCCCch
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRV--MFLDEPTTSNPND 178 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~--~~~de~~~~~s~g 178 (606)
.+++.++|++|++.+++. |+.+.+...+. .+..+...+ .+...+-..|+= ....|....+|+|
T Consensus 74 ~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~----------~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G 142 (275)
T cd03289 74 KWRKAFGVIPQKVFIFSG-TFRKNLDPYGK----------WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHG 142 (275)
T ss_pred HHhhhEEEECCCcccchh-hHHHHhhhccC----------CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHH
Confidence 667889999999999875 77655542221 111111111 111000011110 0122344568999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
||||+.|||||+.+|+||+|||||+|||+.+...+.+.|+++. +++|||+++|+++ .+ ..|||+++|++|++++.|+
T Consensus 143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~G~i~~~g~ 219 (275)
T cd03289 143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEENKVRQYDS 219 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecCCeEeecCC
Confidence 9999999999999999999999999999999999999999875 4899999999985 45 4599999999999999999
Q ss_pred hhHHHH
Q psy13765 259 TDQLVN 264 (606)
Q Consensus 259 ~~~~~~ 264 (606)
++++.+
T Consensus 220 ~~~l~~ 225 (275)
T cd03289 220 IQKLLN 225 (275)
T ss_pred HHHHhh
Confidence 999865
No 228
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-38 Score=315.77 Aligned_cols=215 Identities=27% Similarity=0.453 Sum_probs=167.9
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA 105 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~ 105 (606)
++++|++++++ +.+.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.+||.+.. ...
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~v~~~g~~~~~~~~~~ 72 (236)
T cd03253 1 IEFENVTFAYD-------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV-SSGSILIDGQDIREVTLDS 72 (236)
T ss_pred CEEEEEEEEeC-------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCEEEECCEEhhhCCHHH
Confidence 46899999873 125699999999999999999999999999999999999876 5999999997642 345
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH----HHHHHHHHHHhcCCc-c-cccCCCCCCCCchh
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ----KKRLSIALELINNPR-V-MFLDEPTTSNPNDQ 179 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq----rqRv~ia~~L~~~~~-~-~~~de~~~~~s~g~ 179 (606)
+++.++|++|++.+++ .|+.+.+..... . .+..+ .++..+...+-.-|+ + -.++.+...||+||
T Consensus 73 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-~--------~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~ 142 (236)
T cd03253 73 LRRAIGVVPQDTVLFN-DTIGYNIRYGRP-D--------ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGE 142 (236)
T ss_pred HHhhEEEECCCChhhc-chHHHHHhhcCC-C--------CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHH
Confidence 5678999999998886 587665543211 1 11111 111111111111111 1 13466778999999
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
|||+.||+||+.+|++++|||||+|||+.+...+.+.|+++++ |+|||+++|++.. + ..||++++|++|+++..|++
T Consensus 143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~ 219 (236)
T cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIVLKDGRIVERGTH 219 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEeeCCH
Confidence 9999999999999999999999999999999999999999977 9999999999874 5 45999999999999999998
Q ss_pred hHHHH
Q psy13765 260 DQLVN 264 (606)
Q Consensus 260 ~~~~~ 264 (606)
+++.+
T Consensus 220 ~~~~~ 224 (236)
T cd03253 220 EELLA 224 (236)
T ss_pred HHHhh
Confidence 77643
No 229
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=4e-38 Score=304.13 Aligned_cols=176 Identities=28% Similarity=0.516 Sum_probs=149.7
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INAF 106 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~~ 106 (606)
|+++|++++++. ..+.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ...+
T Consensus 1 i~~~~~~~~~~~------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~ 73 (178)
T cd03247 1 LSINNVSFSYPE------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVPVSDLEKAL 73 (178)
T ss_pred CEEEEEEEEeCC------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCEEHHHHHHHH
Confidence 468999998732 124699999999999999999999999999999999999876 5999999997643 2345
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA 186 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA 186 (606)
++.++|++|++.+++ .|+.+.+ +..||||||||++||++++.+
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~~i------------~~~LS~G~~qrv~laral~~~------------------------ 116 (178)
T cd03247 74 SSLISVLNQRPYLFD-TTLRNNL------------GRRFSGGERQRLALARILLQD------------------------ 116 (178)
T ss_pred HhhEEEEccCCeeec-ccHHHhh------------cccCCHHHHHHHHHHHHHhcC------------------------
Confidence 678999999998876 5776544 567888888888876666666
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|++++|||||+|||+.++..+++.|++++ ++.|||+++|++.. + ..+|++++|++|++++.|
T Consensus 117 ------p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 117 ------APIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred ------CCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999985 58999999999874 5 579999999999998754
No 230
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=3.7e-38 Score=320.33 Aligned_cols=199 Identities=23% Similarity=0.383 Sum_probs=161.4
Q ss_pred cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhhhcccEEEEccCCCCCCCCcHHH
Q psy13765 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INAFRRVSCYIQQDDRLQPLLTIEN 127 (606)
Q Consensus 51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~~~~~~~yv~Q~~~l~~~ltv~~ 127 (606)
+|+|+|+++++||+++|+||||||||||+++|+|+.+ . +|+|.++|++.. ....++.++|++|++.+++.+|+.+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 7999999999999999999999999999999999974 3 899999998653 2345567999999998888889877
Q ss_pred HHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHHHhhhc-------CCcEEEE
Q psy13765 128 VMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIALELIN-------NPRVMFL 198 (606)
Q Consensus 128 ~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA~aL~~-------~P~lllL 198 (606)
.+...... . .+.. .++++. +++..-++- .+|.+...+|+|||||+.||+||+. +|++|+|
T Consensus 89 nl~~~~~~---~-----~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 89 YLTLHQPD---K-----TRTEAVASALN---EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHhcCcc---C-----CCcHHHHHHHH---HHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 66542110 0 0111 123332 222222221 4578889999999999999999997 6799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 199 DEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 199 DEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
||||+|||+.++..+.++|++++++|+|||+++|+++ .+.++||++++|++|++++.|+++++.
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 158 DEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999878999999999976 477899999999999999999987653
No 231
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.3e-38 Score=311.20 Aligned_cols=201 Identities=21% Similarity=0.267 Sum_probs=162.8
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~ 106 (606)
..++++|++++++ ++.+++++|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++......
T Consensus 10 ~~l~~~~l~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~i~~~~~ 80 (214)
T PRK13543 10 PLLAAHALAFSRN--------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV-ESGQIQIDGKTATRGDR 80 (214)
T ss_pred ceEEEeeEEEecC--------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CCeeEEECCEEccchhh
Confidence 3689999999862 35699999999999999999999999999999999999876 58999999987653334
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHc-CCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLL-GLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~ 184 (606)
++.++|++|++.+++.+|+.+.+... ++.. .. ..+++ .+++..-++- .+|.+...+|+|||||+.
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--------~~--~~~~~---~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 147 (214)
T PRK13543 81 SRFMAYLGHLPGLKADLSTLENLHFLCGLHG--------RR--AKQMP---GSALAIVGLAGYEDTLVRQLSAGQKKRLA 147 (214)
T ss_pred hhceEEeecCcccccCCcHHHHHHHHHHhcC--------Cc--HHHHH---HHHHHHcCChhhccCChhhCCHHHHHHHH
Confidence 56799999999999888886665432 1110 00 11222 2222222221 358888899999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
||++++.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++. .+.++||++++++.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 148 LARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 999999999999999999999999999999999999888999999999987 57899999999863
No 232
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.6e-38 Score=317.81 Aligned_cols=199 Identities=25% Similarity=0.350 Sum_probs=159.8
Q ss_pred ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHH
Q psy13765 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSL 131 (606)
Q Consensus 52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~ 131 (606)
|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.... ....+|++|++.+++.+|+.+.+..
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~--~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-TSGGVILEGKQITEP--GPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCC--ChhheEEecCcccCCCCCHHHHHHH
Confidence 5899999999999999999999999999999999876 599999999875421 1234899999999999999777654
Q ss_pred cCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHH
Q psy13765 132 LGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS 209 (606)
Q Consensus 132 ~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~ 209 (606)
. ..... ......+ ++++ .+++..-++- .+|.+...+|||||||+.||+||+.+|++|+|||||+|||+.+
T Consensus 78 ~-~~~~~----~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 149 (230)
T TIGR01184 78 A-VDRVL----PDLSKSERRAIV---EEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149 (230)
T ss_pred H-HHhcc----cCCCHHHHHHHH---HHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 2 11000 0122222 2233 2333332332 4678889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 210 CSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 210 ~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
+..+.+.|++++++ |+|||++||+++ .+.++||++++|++|+++..|++.++
T Consensus 150 ~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 150 RGNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999999875 899999999987 57789999999999999998876543
No 233
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=4.9e-38 Score=314.82 Aligned_cols=210 Identities=19% Similarity=0.303 Sum_probs=165.5
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~ 103 (606)
..|+++||++++. ++++++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. .
T Consensus 6 ~~i~~~~l~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 6 PLLQLQNVGYLAG--------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP-TSGTLLFEGEDISTLKP 76 (225)
T ss_pred ceEEEeccEEeeC--------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCeEEECCEEcCcCCH
Confidence 3689999999872 35799999999999999999999999999999999999776 5999999997643 2
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCchhhh
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPNDQKK 181 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g~~k 181 (606)
..+++.++|++|++.+++. |+.+.+... .. .... . .+++++. +++..-++ -+.|.+...+|+||||
T Consensus 77 ~~~~~~i~~~~q~~~l~~~-tv~enl~~~-~~-~~~~-----~-~~~~~~~---~~l~~~~l~~~~~~~~~~~LS~G~~q 144 (225)
T PRK10247 77 EIYRQQVSYCAQTPTLFGD-TVYDNLIFP-WQ-IRNQ-----Q-PDPAIFL---DDLERFALPDTILTKNIAELSGGEKQ 144 (225)
T ss_pred HHHHhccEEEecccccccc-cHHHHHHhH-Hh-hcCC-----C-hHHHHHH---HHHHHcCCChHHhcCCcccCCHHHHH
Confidence 3456789999999988875 886655421 00 0000 0 1233332 22322233 1468899999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeec-CCcEEEEcCh
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLS-GGQCLYQGAT 259 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~-~G~~~~~G~~ 259 (606)
|+.||+||+.+|++++|||||+|||+.++..+.+.|++++++ |.|||+++|+++. + +.||++++|+ ++..+.+|..
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 145 RISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEARY 222 (225)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhhhh
Confidence 999999999999999999999999999999999999999764 8999999999874 5 5799999995 5555555553
No 234
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=6.3e-38 Score=308.66 Aligned_cols=196 Identities=21% Similarity=0.368 Sum_probs=159.8
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INAF 106 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~~ 106 (606)
++++||++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ...+
T Consensus 1 l~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~ 71 (201)
T cd03231 1 LEADELTCER--------DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP-LAGRVLLNGGPLDFQRDSI 71 (201)
T ss_pred CEEEEEEEEe--------CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccccHHh
Confidence 4689999986 235799999999999999999999999999999999999876 5999999997643 2345
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA 186 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA 186 (606)
++.++|++|++.+++.+|+.+.+....- . . ..+++.-+.+.+.-.+ ..|.+...+|+|||||+.||
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~-----~--~-----~~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~qrl~la 137 (201)
T cd03231 72 ARGLLYLGHAPGIKTTLSVLENLRFWHA-----D--H-----SDEQVEEALARVGLNG--FEDRPVAQLSAGQQRRVALA 137 (201)
T ss_pred hhheEEeccccccCCCcCHHHHHHhhcc-----c--c-----cHHHHHHHHHHcCChh--hhcCchhhCCHHHHHHHHHH
Confidence 6789999999999888998776654210 0 0 2333332222222111 35778888999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765 187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248 (606)
Q Consensus 187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 248 (606)
+||+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++.. +...+|+++++
T Consensus 138 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~ 198 (201)
T cd03231 138 RLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL 198 (201)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence 99999999999999999999999999999999998889999999999874 66899999887
No 235
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=8e-38 Score=303.21 Aligned_cols=172 Identities=24% Similarity=0.476 Sum_probs=147.7
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---- 103 (606)
.++++|+++++ +++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~ 70 (182)
T cd03215 4 VLEVRGLSVKG------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP-ASGEITLDGKPVTRRSPR 70 (182)
T ss_pred EEEEeccEEEe------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCccCHH
Confidence 58899999863 89999999999999999999999999999999999876 59999999976532
Q ss_pred hhhcccEEEEccCC---CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhh
Q psy13765 104 NAFRRVSCYIQQDD---RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK 180 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~---~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~ 180 (606)
...++.++|++|++ .+++.+|+.+.+..... ||||||||++||++|+.+
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------LS~G~~qrl~la~al~~~------------------ 122 (182)
T cd03215 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------LSGGNQQKVVLARWLARD------------------ 122 (182)
T ss_pred HHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------cCHHHHHHHHHHHHHccC------------------
Confidence 23467899999995 57888898776643210 888888888866666666
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
|++++|||||+|||+.++..+.+.|++++++|+|+|+++|+++ .+.++||++++|++|++
T Consensus 123 ------------p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 123 ------------PRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred ------------CCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999877999999999976 57789999999999974
No 236
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=7.8e-38 Score=354.70 Aligned_cols=219 Identities=24% Similarity=0.372 Sum_probs=169.2
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
..|+++||+|+|+. +++++|+|+|++|++||.+||+||||||||||+|+|+|+.+| .+|+|.+||.+. +.
T Consensus 340 ~~i~~~~vsf~y~~------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p-~~G~I~i~g~~i~~~~~ 412 (582)
T PRK11176 340 GDIEFRNVTFTYPG------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI-DEGEILLDGHDLRDYTL 412 (582)
T ss_pred CeEEEEEEEEecCC------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC-CCceEEECCEEhhhcCH
Confidence 36999999999842 236799999999999999999999999999999999999887 599999999864 34
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCcc--cccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRV--MFLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~--~~~de~~~~~s~ 177 (606)
..+++.++||+|++.+++. |+.+.+.. +..+ ..+..+-+.+ .+..-+-.-|+= ...+|-...+||
T Consensus 413 ~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~-~~~~-------~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSG 483 (582)
T PRK11176 413 ASLRNQVALVSQNVHLFND-TIANNIAY-ARTE-------QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSG 483 (582)
T ss_pred HHHHhhceEEccCceeecc-hHHHHHhc-CCCC-------CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCH
Confidence 6778999999999999875 66444422 2111 0111221111 111111111110 123344566888
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||++|||||+++|++|+||||||+||+.++..+++.|+++.+ ++|+|+++|+++ ..+.||+|++|++|++++.|
T Consensus 484 GqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g 560 (582)
T PRK11176 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEKADEILVVEDGEIVERG 560 (582)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEeC
Confidence 888888888888888999999999999999999999999998754 799999999985 45789999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++.+
T Consensus 561 ~~~~l~~ 567 (582)
T PRK11176 561 THAELLA 567 (582)
T ss_pred CHHHHHh
Confidence 9998864
No 237
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-38 Score=337.67 Aligned_cols=205 Identities=26% Similarity=0.453 Sum_probs=162.1
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~ 104 (606)
.++++||+|+|+. ++.++|+|+|+++++||.+||+|+||||||||+++|+|.+++ .+|+|.+||.+. +.+
T Consensus 336 ~l~~~~vsF~y~~------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~-~~G~i~~~g~~~~~l~~~ 408 (573)
T COG4987 336 ALELRNVSFTYPG------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP-QQGSITLNGVEIASLDEQ 408 (573)
T ss_pred eeeeccceeecCC------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC-CCCeeeECCcChhhCChh
Confidence 7999999999863 345799999999999999999999999999999999999887 599999999764 345
Q ss_pred hhcccEEEEccCCCCCCCCcH----------------HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTI----------------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-- 166 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv----------------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-- 166 (606)
.+++.+++++|..++|.. |+ .++++.+||++... ..|+=+
T Consensus 409 ~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~---------------------~~p~gl~t 466 (573)
T COG4987 409 ALRETISVLTQRVHLFSG-TLRDNLRLANPDASDEELWAALQQVGLEKLLE---------------------SAPDGLNT 466 (573)
T ss_pred hHHHHHhhhccchHHHHH-HHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHH---------------------hChhhhhc
Confidence 678899999999988764 33 22334444433222 122111
Q ss_pred ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee
Q psy13765 167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY 246 (606)
Q Consensus 167 ~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~ 246 (606)
-+||-...+|||||||+.|||+|++|.++++|||||.|||+.|.++++++|.+-.+ |+|+|++||+... .+.||||+
T Consensus 467 ~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIi 543 (573)
T COG4987 467 WLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRII 543 (573)
T ss_pred hhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEE
Confidence 23444444555555555566666666999999999999999999999999987654 8999999999875 47899999
Q ss_pred eecCCcEEEEcChhHHHH
Q psy13765 247 LLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 247 ~L~~G~~~~~G~~~~~~~ 264 (606)
+|++|++++.|+++++.+
T Consensus 544 vl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 544 VLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEECCeeeecCCHHhhhc
Confidence 999999999999999875
No 238
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-39 Score=299.17 Aligned_cols=197 Identities=27% Similarity=0.454 Sum_probs=165.1
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC-----
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR----- 101 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~----- 101 (606)
..++++||.++| +...+||+||++.+.|+++.|||.|||||||+|+||.=+..| ..|.|.+||+++
T Consensus 5 ~~l~v~dlHK~~--------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P-~~G~I~v~geei~~k~~ 75 (256)
T COG4598 5 NALEVEDLHKRY--------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-SAGSIRVNGEEIRLKRD 75 (256)
T ss_pred cceehhHHHhhc--------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCC-CCceEEECCeEEEeeeC
Confidence 368889998876 667899999999999999999999999999999999988777 599999999632
Q ss_pred --------Ch---hhhcccEEEEccCCCCCCCCcH-HH----------------------HHHHcCCccccCCccccCCh
Q psy13765 102 --------NI---NAFRRVSCYIQQDDRLQPLLTI-EN----------------------VMSLLGLDESQNTRSSQLSG 147 (606)
Q Consensus 102 --------~~---~~~~~~~~yv~Q~~~l~~~ltv-~~----------------------~l~~~gl~~~~~~~~~~lSg 147 (606)
+. +.+|.+.|+|+|+.++++.+|+ ++ .+...|+.+..+.++..|||
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSG 155 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSG 155 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCc
Confidence 11 3456678999999999999997 33 34445555555555555666
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy13765 148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTI 227 (606)
Q Consensus 148 GqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~ti 227 (606)
||+||++ |||||+.+|+++++|||||.|||+-.-++++.+++|+++|+|.
T Consensus 156 GQQQR~a------------------------------IARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTM 205 (256)
T COG4598 156 GQQQRVA------------------------------IARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTM 205 (256)
T ss_pred hHHHHHH------------------------------HHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeE
Confidence 6665555 5555566699999999999999999999999999999999999
Q ss_pred EEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 228 ICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 228 i~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
+++||.+.. ..+...+|++|.+|.+-+.|+|+++.
T Consensus 206 v~VTHEM~F-AR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 206 VVVTHEMGF-ARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred EEEeeehhH-HHhhhhheEEeecceecccCChHHHh
Confidence 999999874 67899999999999999999999885
No 239
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.3e-37 Score=353.71 Aligned_cols=216 Identities=25% Similarity=0.334 Sum_probs=166.1
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
..++++|++|.|+. ++++|+|+|+++++||.+||+|+||||||||+|+|+|+++| .+|+|.+||.+. +.
T Consensus 339 ~~i~~~~v~f~y~~-------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~idg~~i~~~~~ 410 (592)
T PRK10790 339 GRIDIDNVSFAYRD-------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL-TEGEIRLDGRPLSSLSH 410 (592)
T ss_pred CeEEEEEEEEEeCC-------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECCEEhhhCCH
Confidence 36999999999842 24699999999999999999999999999999999999887 599999999864 45
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH----HHHHHhcCCcc--cccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS----IALELINNPRV--MFLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~----ia~~L~~~~~~--~~~de~~~~~s~ 177 (606)
+.+++.++||+|++.+++. |+.+.+.... +. +-.+-.++. +-..+-.-|+= ...+|-...+||
T Consensus 411 ~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~--~~--------~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSG 479 (592)
T PRK10790 411 SVLRQGVAMVQQDPVVLAD-TFLANVTLGR--DI--------SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV 479 (592)
T ss_pred HHHHhheEEEccCCccccc-hHHHHHHhCC--CC--------CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 6789999999999999986 6544333211 10 111111111 00001111110 012344556777
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||++|||||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|+++|+++ ..+.||+|++|++|+++..|
T Consensus 480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G 556 (592)
T PRK10790 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQG 556 (592)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEc
Confidence 777777788888888999999999999999999999999998865 699999999985 35789999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++.+
T Consensus 557 ~~~~L~~ 563 (592)
T PRK10790 557 THQQLLA 563 (592)
T ss_pred CHHHHHh
Confidence 9999864
No 240
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-38 Score=356.41 Aligned_cols=225 Identities=22% Similarity=0.289 Sum_probs=179.6
Q ss_pred eEEEEEeeEEEEecCCc-cc--ccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh
Q psy13765 27 IEIKFKDLTYTVSTGLG-FK--QEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~-~~--~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~ 103 (606)
..|+++||++.|+.+.. +. .+.+.+|+||||+|++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++...
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p-~~G~I~~~g~~i~~ 390 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES-QGGEIIFNGQRIDT 390 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCcEEEECCEECCc
Confidence 35999999999852100 00 0124699999999999999999999999999999999999876 59999999986431
Q ss_pred ------hhhcccEEEEccCC--CCCCCCcHHHHHHH-cCCccccCCccccCChH-HHHHHHHHHHHhcCCcc--cccCCC
Q psy13765 104 ------NAFRRVSCYIQQDD--RLQPLLTIENVMSL-LGLDESQNTRSSQLSGG-QKKRLSIALELINNPRV--MFLDEP 171 (606)
Q Consensus 104 ------~~~~~~~~yv~Q~~--~l~~~ltv~~~l~~-~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~--~~~de~ 171 (606)
..+++.++||+|++ .+++.+|+.+.+.. +... + ..+.. .++++ .+++..-.+ -.++.+
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~---~----~~~~~~~~~~~---~~~L~~~gL~~~~~~~~ 460 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH---G----LLPGKAAAARV---AWLLERVGLLPEHAWRY 460 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc---C----CCCHHHHHHHH---HHHHHHcCCCHHHhhCC
Confidence 23467899999997 58889999776653 1110 0 01111 22333 344443334 246888
Q ss_pred CCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 172 ~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
...|||||||||.||+||+.+|++|||||||+|||+.++.++.++|++++++ |.|||++|||++ .+.++|||+++|++
T Consensus 461 ~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~ 539 (623)
T PRK10261 461 PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL 539 (623)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999875 899999999987 57789999999999
Q ss_pred CcEEEEcChhHHH
Q psy13765 251 GQCLYQGATDQLV 263 (606)
Q Consensus 251 G~~~~~G~~~~~~ 263 (606)
|++++.|+++++.
T Consensus 540 G~iv~~g~~~~i~ 552 (623)
T PRK10261 540 GQIVEIGPRRAVF 552 (623)
T ss_pred CEEEEecCHHHHh
Confidence 9999999998875
No 241
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=8.4e-38 Score=362.16 Aligned_cols=216 Identities=24% Similarity=0.361 Sum_probs=168.8
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
..|+++||+|+|+. .++++|+|+|++|++||.+||+||||||||||+|+|+|+++| .+|+|.+||.+. +.
T Consensus 476 ~~I~~~~vsf~y~~------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~ 548 (710)
T TIGR03796 476 GYVELRNITFGYSP------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP-WSGEILFDGIPREEIPR 548 (710)
T ss_pred CeEEEEEEEEecCC------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEeHHHCCH
Confidence 36999999999853 246799999999999999999999999999999999999887 599999999864 45
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH----HHHHHhcCCcc--cccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS----IALELINNPRV--MFLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~----ia~~L~~~~~~--~~~de~~~~~s~ 177 (606)
..+|+.++||+|++.+++. |+.|.+...+ .+ .+-.+-+++. +-..+...|+= ....|...+|||
T Consensus 549 ~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~-~~--------~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSG 618 (710)
T TIGR03796 549 EVLANSVAMVDQDIFLFEG-TVRDNLTLWD-PT--------IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSG 618 (710)
T ss_pred HHHHhheeEEecCChhhhc-cHHHHhhCCC-CC--------CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCH
Confidence 6789999999999999875 6644443211 00 1111211111 11111112211 133455667888
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||++|||||+++|++|+||||||+||+.++.++.+.|++ .++|+|+++|+++. .+.||+|++|++|++++.|
T Consensus 619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~--i~~~D~Iivl~~G~i~~~G 693 (710)
T TIGR03796 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST--IRDCDEIIVLERGKVVQRG 693 (710)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH--HHhCCEEEEEeCCEEEEec
Confidence 888888888888888999999999999999999999999975 48999999999863 4779999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++.+
T Consensus 694 ~~~~Ll~ 700 (710)
T TIGR03796 694 THEELWA 700 (710)
T ss_pred CHHHHHH
Confidence 9999875
No 242
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=316.03 Aligned_cols=220 Identities=23% Similarity=0.331 Sum_probs=172.7
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--C--CCccEEEECCccCC
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--N--GVTGQILTNGHSRN 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~--~~~G~I~~~G~~~~ 102 (606)
+.++++||++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.. + ..+|+|.+||.+..
T Consensus 2 ~~l~~~~v~~~~~--------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~ 73 (250)
T PRK14266 2 YRIEVENLNTYFD--------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY 73 (250)
T ss_pred cEEEEEeEEEEeC--------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcc
Confidence 4588999999872 3569999999999999999999999999999999999853 2 25899999998653
Q ss_pred -----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCc-c-cccCCCCCC
Q psy13765 103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPR-V-MFLDEPTTS 174 (606)
Q Consensus 103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~-~-~~~de~~~~ 174 (606)
....++.++|++|++.+++. |+.+.+... ... . +..+.. .++++.-+.+.+.-.+ + -.+|++...
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~-~~~-~----~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 146 (250)
T PRK14266 74 DPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYG-LRI-H----GEDDEDFIEERVEESLKAAALWDEVKDKLDKSALG 146 (250)
T ss_pred cccccHHHHhhheEEEecCCccCcc-hHHHHHHhH-Hhh-c----CCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCccc
Confidence 23456789999999988885 776555421 110 0 001111 1233332222221100 0 135889999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.++|+++++ |.|||+++|++. .+...+|++++|++|+++
T Consensus 147 LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~ 224 (250)
T PRK14266 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEII 224 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEE
Confidence 999999999999999999999999999999999999999999999965 899999999986 577899999999999999
Q ss_pred EEcChhHHH
Q psy13765 255 YQGATDQLV 263 (606)
Q Consensus 255 ~~G~~~~~~ 263 (606)
+.|+++++.
T Consensus 225 ~~g~~~~~~ 233 (250)
T PRK14266 225 ESGLTDQIF 233 (250)
T ss_pred EeCCHHHHH
Confidence 999998874
No 243
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=8.4e-38 Score=353.40 Aligned_cols=217 Identities=28% Similarity=0.457 Sum_probs=167.9
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
-.|+++|++|.|+ +++++|+|+|+++++||.+||+||||||||||+|+|.|++++ .+|+|.+||.+. +.
T Consensus 327 ~~I~f~~vsf~y~-------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~-~~G~I~idg~dI~~i~~ 398 (567)
T COG1132 327 GSIEFENVSFSYP-------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP-TSGEILIDGIDIRDISL 398 (567)
T ss_pred CeEEEEEEEEEcC-------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCeEEECCEehhhcCH
Confidence 4599999999984 246899999999999999999999999999999999999887 599999999764 56
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH-HH--HHH-hcCCcc--cccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS-IA--LEL-INNPRV--MFLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~-ia--~~L-~~~~~~--~~~de~~~~~s~ 177 (606)
..+|+.++||+||+.+|. -|+.+.+.. |..+ .|-.|-.+.+ .| -+. .+-|+= -...|-...+||
T Consensus 399 ~~lr~~I~~V~Qd~~LF~-~TI~~NI~~-g~~~--------at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSg 468 (567)
T COG1132 399 DSLRKRIGIVSQDPLLFS-GTIRENIAL-GRPD--------ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG 468 (567)
T ss_pred HHHHHhccEEcccceeec-ccHHHHHhc-CCCC--------CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCH
Confidence 788999999999999998 566443332 2111 1112211111 11 111 122321 123344555666
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||++||||++++|++|+||||||+||+.+...+.+.++++. +|+|+++++|+++. + +.+|+|++|++|++++.|
T Consensus 469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i-~~aD~IiVl~~G~i~e~G 545 (567)
T COG1132 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-I-KNADRIIVLDNGRIVERG 545 (567)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-H-HhCCEEEEEECCEEEEec
Confidence 66666667777777799999999999999999999999999887 57899999999864 4 559999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++.+
T Consensus 546 ~h~eLl~ 552 (567)
T COG1132 546 THEELLA 552 (567)
T ss_pred CHHHHHH
Confidence 9999876
No 244
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-37 Score=307.71 Aligned_cols=198 Identities=23% Similarity=0.351 Sum_probs=158.7
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--hhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--NAF 106 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--~~~ 106 (606)
++++|++++++ .+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... ..+
T Consensus 2 l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~v~~~g~~~~~~~~~~ 72 (204)
T PRK13538 2 LEARNLACERD--------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP-DAGEVLWQGEPIRRQRDEY 72 (204)
T ss_pred eEEEEEEEEEC--------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEcccchHHh
Confidence 68899999873 35699999999999999999999999999999999999876 59999999986532 345
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~I 185 (606)
++.++|++|++.+++.+|+.+.+.... . ..+ . -.++++. +++..-.+- ..|.+...+|+|||||+.|
T Consensus 73 ~~~~~~~~~~~~~~~~~tv~e~l~~~~-~-~~~----~---~~~~~~~---~~l~~~gl~~~~~~~~~~LS~G~~qrl~l 140 (204)
T PRK13538 73 HQDLLYLGHQPGIKTELTALENLRFYQ-R-LHG----P---GDDEALW---EALAQVGLAGFEDVPVRQLSAGQQRRVAL 140 (204)
T ss_pred hhheEEeCCccccCcCCcHHHHHHHHH-H-hcC----c---cHHHHHH---HHHHHcCCHHHhhCChhhcCHHHHHHHHH
Confidence 678999999999999899977665421 0 000 0 1123332 222222221 4578888999999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 248 (606)
|+||+++|++++|||||+|||+.++..+.+.|++++++|.|||++||++. .+.+..+|++++
T Consensus 141 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 141 ARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 99999999999999999999999999999999999877899999999987 465666677666
No 245
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=316.90 Aligned_cols=221 Identities=22% Similarity=0.253 Sum_probs=173.0
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccC
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSR 101 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~ 101 (606)
++.+.++++++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ..+|+|.++|++.
T Consensus 6 ~~~~~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i 77 (261)
T PRK14263 6 PIVMDCKLDKIFY--------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV 77 (261)
T ss_pred CceEEEEeEEEEe--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEec
Confidence 4568889998876 346799999999999999999999999999999999999764 2589999999865
Q ss_pred C-----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcC-Cccc-ccCCCCCC
Q psy13765 102 N-----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN-PRVM-FLDEPTTS 174 (606)
Q Consensus 102 ~-----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~-~~~~-~~de~~~~ 174 (606)
. ...+++.++|++|++.++ .+|+.+.+... .... ......+.++.-+.+.+.- +.+. ..+++...
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~-~~~~------~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~ 149 (261)
T PRK14263 78 YGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFG-LRLN------RYKGDLGDRVKHALQGAALWDEVKDKLKVSGLS 149 (261)
T ss_pred cccccchHhhhhceEEEecCCccc-cccHHHHHHHH-Hhhc------CchHHHHHHHHHHHHHcCCchhhhhhhhCCccc
Confidence 3 124567799999999887 47886655432 1100 0111112233222222221 1111 35678889
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec-----
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS----- 249 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~----- 249 (606)
+|+|||||+.|||||+++|++|+|||||+|||+.++.++.+.|+++++ ++|||+++|+++ .+.++||++++|+
T Consensus 150 LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~ 227 (261)
T PRK14263 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQ 227 (261)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEeccccc
Confidence 999999999999999999999999999999999999999999999964 799999999987 4778999999995
Q ss_pred ---CCcEEEEcChhHHHH
Q psy13765 250 ---GGQCLYQGATDQLVN 264 (606)
Q Consensus 250 ---~G~~~~~G~~~~~~~ 264 (606)
+|++++.|+++++.+
T Consensus 228 ~~~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 228 GTRTGYLVEMGPTAQIFQ 245 (261)
T ss_pred ccCCceEEEeCCHHHHHh
Confidence 899999999988643
No 246
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=6.5e-38 Score=348.38 Aligned_cols=210 Identities=18% Similarity=0.249 Sum_probs=162.0
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~ 104 (606)
.|+++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|.+.. ..
T Consensus 3 ~l~~~~l~~~~~--------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p-~~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 3 SLQISQGTFRLS--------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL-LSGERQSQFSHITRLSFE 73 (490)
T ss_pred eEEEEeEEEEcC--------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCceEEECCcccccCCHH
Confidence 489999999873 34699999999999999999999999999999999999876 5899999986542 23
Q ss_pred hhcccEEEEccCCCCC---C-----CCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCC
Q psy13765 105 AFRRVSCYIQQDDRLQ---P-----LLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~---~-----~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s 176 (606)
..++.++|++|++... + .+|+.+.+.. ....++|+.-+.+.+.-.+ .+|.+...+|
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~l~~--~~~~~~~~LS 137 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQD--------------EVKDPARCEQLAQQFGITA--LLDRRFKYLS 137 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhccc--------------chhHHHHHHHHHHHcCCHh--hhhCCcccCC
Confidence 3456799999986531 1 2344332210 0012333332222222111 3466667777
Q ss_pred chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256 (606)
Q Consensus 177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~ 256 (606)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.+.||++++|++|+++..
T Consensus 138 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~ 216 (490)
T PRK10938 138 TGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAET 216 (490)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEe
Confidence 77777777777777889999999999999999999999999999888999999999986 57789999999999999999
Q ss_pred cChhHHH
Q psy13765 257 GATDQLV 263 (606)
Q Consensus 257 G~~~~~~ 263 (606)
|+++++.
T Consensus 217 ~~~~~~~ 223 (490)
T PRK10938 217 GEREEIL 223 (490)
T ss_pred CCHHHHh
Confidence 9988754
No 247
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1e-37 Score=311.15 Aligned_cols=210 Identities=23% Similarity=0.335 Sum_probs=163.1
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~ 104 (606)
.++++|++++++. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.. ..
T Consensus 2 ~l~~~~l~~~~~~------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~ 74 (221)
T cd03244 2 DIEFKNVSLRYRP------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL-SSGSILIDGVDISKIGLH 74 (221)
T ss_pred cEEEEEEEEecCC------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEEhHhCCHH
Confidence 3789999998742 235799999999999999999999999999999999999776 5999999998642 34
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH----HHHHHHHHHHhcCC-cc-cccCCCCCCCCch
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ----KKRLSIALELINNP-RV-MFLDEPTTSNPND 178 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq----rqRv~ia~~L~~~~-~~-~~~de~~~~~s~g 178 (606)
.+++.++|++|++.+++ .|+.+.+.... . .+-.+ .+++.+...+-..| .+ ...+++...+|+|
T Consensus 75 ~~~~~i~~~~q~~~l~~-~tv~enl~~~~--~--------~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G 143 (221)
T cd03244 75 DLRSRISIIPQDPVLFS-GTIRSNLDPFG--E--------YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVG 143 (221)
T ss_pred HHhhhEEEECCCCcccc-chHHHHhCcCC--C--------CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHH
Confidence 56778999999998776 47766543211 0 01000 01111111111100 01 1246678899999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++.. + ..||++++|++|++++.|+
T Consensus 144 ~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-I-IDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-hhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999999865 6899999999864 5 4599999999999998876
No 248
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.6e-37 Score=315.65 Aligned_cols=221 Identities=21% Similarity=0.270 Sum_probs=169.2
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--- 102 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--- 102 (606)
.-.|+++|++++++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..
T Consensus 17 ~~~i~~~~l~~~~~~------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~ 89 (257)
T cd03288 17 GGEIKIHDLCVRYEN------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI-FDGKIVIDGIDISKLP 89 (257)
T ss_pred CceEEEEEEEEEeCC------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC-CCCeEEECCEEhhhCC
Confidence 346999999999742 225699999999999999999999999999999999999876 5999999998653
Q ss_pred hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcC-C-cc-cccCCCCCCCCchh
Q psy13765 103 INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN-P-RV-MFLDEPTTSNPNDQ 179 (606)
Q Consensus 103 ~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~-~-~~-~~~de~~~~~s~g~ 179 (606)
...+++.++|++|++.+++. |+.+.+. ....... ... -...+++.+. .++.. | .+ -.++++...+|+||
T Consensus 90 ~~~~~~~i~~v~q~~~l~~~-tv~~nl~---~~~~~~~--~~~-~~~l~~~~l~-~~~~~~~~~l~~~~~~~~~~LS~G~ 161 (257)
T cd03288 90 LHTLRSRLSIILQDPILFSG-SIRFNLD---PECKCTD--DRL-WEALEIAQLK-NMVKSLPGGLDAVVTEGGENFSVGQ 161 (257)
T ss_pred HHHHhhhEEEECCCCccccc-HHHHhcC---cCCCCCH--HHH-HHHHHHhCcH-HHHhhcccccCcEeccCCCcCCHHH
Confidence 24567889999999988764 7654331 1110000 000 0000111111 11111 1 11 13567778899999
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
|||+.||+||+++|++|+|||||+|||+.++..+.+.++++. ++.|||+++|++.. +. .|||+++|++|+++..|++
T Consensus 162 ~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~G~i~~~g~~ 238 (257)
T cd03288 162 RQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSRGILVECDTP 238 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999875 48999999999874 54 4999999999999999999
Q ss_pred hHHHH
Q psy13765 260 DQLVN 264 (606)
Q Consensus 260 ~~~~~ 264 (606)
+++.+
T Consensus 239 ~~~~~ 243 (257)
T cd03288 239 ENLLA 243 (257)
T ss_pred HHHHh
Confidence 87754
No 249
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=317.14 Aligned_cols=220 Identities=25% Similarity=0.390 Sum_probs=172.3
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC------ccC
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG------HSR 101 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G------~~~ 101 (606)
.++++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++| ++.
T Consensus 10 ~i~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~-~~G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 10 VFNISRLYLYI--------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI-YDSKIKVDGKVLYFGKDI 80 (257)
T ss_pred heeeeeEEEec--------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CcCceeEcCEEEECCccc
Confidence 58999999986 346799999999999999999999999999999999999776 465555554 433
Q ss_pred ---ChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcC-Ccc-cccCCCCCCC
Q psy13765 102 ---NINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINN-PRV-MFLDEPTTSN 175 (606)
Q Consensus 102 ---~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~-~~~-~~~de~~~~~ 175 (606)
+...+++.++|++|++.+++.+|+.+.+... ... .+ ....-+ ++++.-+.+.+.- +.+ -..|++...+
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~-~~~-~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 154 (257)
T PRK14246 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP-LKS-HG----IKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQL 154 (257)
T ss_pred ccCCHHHHhcceEEEccCCccCCCCcHHHHHHHH-HHh-cC----CCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccC
Confidence 2234577899999999999999987766431 110 00 001111 2333323333221 110 1457888999
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
|+|||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+.||++++|++|+++.
T Consensus 155 S~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~ 232 (257)
T PRK14246 155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVE 232 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999965 699999999976 5678999999999999999
Q ss_pred EcChhHHHH
Q psy13765 256 QGATDQLVN 264 (606)
Q Consensus 256 ~G~~~~~~~ 264 (606)
.|+++++.+
T Consensus 233 ~g~~~~~~~ 241 (257)
T PRK14246 233 WGSSNEIFT 241 (257)
T ss_pred ECCHHHHHh
Confidence 999887653
No 250
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.8e-37 Score=348.96 Aligned_cols=219 Identities=23% Similarity=0.419 Sum_probs=175.0
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
..++++|++++|+. +++++|+|+|+++++||.++|+||||||||||+|+|+|+.+| .+|+|.+||.+. +.
T Consensus 315 ~~i~~~~v~~~y~~------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~i~~~~~ 387 (544)
T TIGR01842 315 GHLSVENVTIVPPG------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP-TSGSVRLDGADLKQWDR 387 (544)
T ss_pred CeEEEEEEEEEcCC------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEehhhCCH
Confidence 36999999999842 235799999999999999999999999999999999999876 599999999864 34
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHH----HHHHHHHHHhcCCc--ccccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK----KRLSIALELINNPR--VMFLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqr----qRv~ia~~L~~~~~--~~~~de~~~~~s~ 177 (606)
..+++.++||+|++.+++. |+.+.+...+ .+ .+-.+- +++.+...+-.-|+ --..+|....+||
T Consensus 388 ~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-~~--------~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSg 457 (544)
T TIGR01842 388 ETFGKHIGYLPQDVELFPG-TVAENIARFG-EN--------ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSG 457 (544)
T ss_pred HHHhhheEEecCCcccccc-cHHHHHhccC-CC--------CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCH
Confidence 5678899999999999986 7765554222 11 121121 11111111111121 1245677888999
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||++|||||+++|++|+|||||+|||+.++..+.+.|+++.++|+|+|+++|+++ ..+.||++++|++|++++.|
T Consensus 458 Gq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g 535 (544)
T TIGR01842 458 GQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFG 535 (544)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeC
Confidence 9999999999999999999999999999999999999999998767899999999986 34789999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++.+
T Consensus 536 ~~~~l~~ 542 (544)
T TIGR01842 536 ERDEVLA 542 (544)
T ss_pred CHHHHhh
Confidence 9988753
No 251
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.3e-37 Score=296.64 Aligned_cols=158 Identities=28% Similarity=0.476 Sum_probs=139.5
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----h
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----N 104 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----~ 104 (606)
|+++|++++|+ ++++++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... .
T Consensus 1 l~~~~l~~~~~--------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~ 71 (163)
T cd03216 1 LELRGITKRFG--------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGKEVSFASPRD 71 (163)
T ss_pred CEEEEEEEEEC--------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEECCcCCHHH
Confidence 46899999873 34699999999999999999999999999999999999876 59999999986532 2
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~ 184 (606)
..++.++|++| ||||||||+++|++|+.+
T Consensus 72 ~~~~~i~~~~q-----------------------------LS~G~~qrl~laral~~~---------------------- 100 (163)
T cd03216 72 ARRAGIAMVYQ-----------------------------LSVGERQMVEIARALARN---------------------- 100 (163)
T ss_pred HHhcCeEEEEe-----------------------------cCHHHHHHHHHHHHHhcC----------------------
Confidence 34667999999 899999888877766666
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++. .+.+.||++++|++|++++
T Consensus 101 --------p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 101 --------ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred --------CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999877999999999976 4678899999999999875
No 252
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-37 Score=316.33 Aligned_cols=221 Identities=23% Similarity=0.292 Sum_probs=174.6
Q ss_pred CceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-C---CccEEEECCcc
Q psy13765 25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN-G---VTGQILTNGHS 100 (606)
Q Consensus 25 ~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~-~---~~G~I~~~G~~ 100 (606)
++..|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ + .+|+|.++|.+
T Consensus 13 ~~~~l~~~~l~~~~~--------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~ 84 (265)
T PRK14252 13 TQQKSEVNKLNFYYG--------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDN 84 (265)
T ss_pred CCceEEEEEEEEEEC--------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcc
Confidence 345699999999873 35799999999999999999999999999999999998753 1 58999999975
Q ss_pred CC-------hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH--HHHHHHHHHHhcCC-cc-cccC
Q psy13765 101 RN-------INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ--KKRLSIALELINNP-RV-MFLD 169 (606)
Q Consensus 101 ~~-------~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq--rqRv~ia~~L~~~~-~~-~~~d 169 (606)
.+ ...+++.++|++|++.+++. |+.+.+.. +... ..+...+ ++++.-+.+.+.-. .+ -..|
T Consensus 85 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~-~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 156 (265)
T PRK14252 85 VNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAY-GLRI------RGVKRRSILEERVENALRNAALWDEVKDRLG 156 (265)
T ss_pred ccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHh-HHHH------cCCChHHHHHHHHHHHHHHcCCchhhhHHHh
Confidence 42 13456789999999998886 88665542 1110 0111111 23333232222211 11 1457
Q ss_pred CCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765 170 EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 170 e~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
++...+|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.++||++++|+
T Consensus 157 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~ 234 (265)
T PRK14252 157 DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMY 234 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 88899999999999999999999999999999999999999999999999976 689999999976 5778999999999
Q ss_pred CCcEEEEcChhHHH
Q psy13765 250 GGQCLYQGATDQLV 263 (606)
Q Consensus 250 ~G~~~~~G~~~~~~ 263 (606)
+|+++..|+.+++.
T Consensus 235 ~G~i~~~g~~~~~~ 248 (265)
T PRK14252 235 MGELIEFGATDTIF 248 (265)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988764
No 253
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-38 Score=347.40 Aligned_cols=215 Identities=20% Similarity=0.323 Sum_probs=173.3
Q ss_pred EEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----hhh
Q psy13765 31 FKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----NAF 106 (606)
Q Consensus 31 ~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----~~~ 106 (606)
++|++++| +++++|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++... ...
T Consensus 1 ~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~ 71 (491)
T PRK10982 1 MSNISKSF--------PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK-DSGSILFQGKEIDFKSSKEAL 71 (491)
T ss_pred CCceEEEe--------CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCEECCCCCHHHHH
Confidence 36888876 235799999999999999999999999999999999999876 59999999986532 234
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~ 184 (606)
++.++||+|++.+++.+|+.+.+.. +.....+. ..+.. +++++. +++..-.+- ..|.+...|||||||||.
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~~~l~~-~~~~~~~~---~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~LSgGq~qrv~ 144 (491)
T PRK10982 72 ENGISMVHQELNLVLQRSVMDNMWL-GRYPTKGM---FVDQDKMYRDTK---AIFDELDIDIDPRAKVATLSVSQMQMIE 144 (491)
T ss_pred hCCEEEEecccccccCCCHHHHhhc-cccccccc---ccCHHHHHHHHH---HHHHHcCCCCCccCchhhCCHHHHHHHH
Confidence 5679999999999999999776643 21111000 01211 123333 333332332 468889999999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.++||++++|++|+++..|+++++
T Consensus 145 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 145 IAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 999999999999999999999999999999999999888999999999976 57789999999999999999987664
No 254
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.5e-37 Score=351.60 Aligned_cols=217 Identities=26% Similarity=0.479 Sum_probs=169.4
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
..|+++|++|+|+. +++++|+|+|+++++||.+||+||||||||||+|+|+|+.++ .+|+|.+||.+. +.
T Consensus 337 ~~i~~~~v~f~y~~------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p-~~G~I~i~g~~i~~~~~ 409 (574)
T PRK11160 337 VSLTLNNVSFTYPD------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP-QQGEILLNGQPIADYSE 409 (574)
T ss_pred CeEEEEEEEEECCC------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEhhhCCH
Confidence 46999999999842 235699999999999999999999999999999999999877 599999999864 45
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHH----HHHHHHHHhcCCccc--ccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK----RLSIALELINNPRVM--FLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrq----Rv~ia~~L~~~~~~~--~~de~~~~~s~ 177 (606)
..+|+.++||+|++.+++. |+.|.+.... . +.+--+-. ++.+.. .+.+|+=+ ..+|....+||
T Consensus 410 ~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~-~--------~~~~~~i~~al~~~~l~~-~i~~p~GldT~vge~g~~LSg 478 (574)
T PRK11160 410 AALRQAISVVSQRVHLFSA-TLRDNLLLAA-P--------NASDEALIEVLQQVGLEK-LLEDDKGLNAWLGEGGRQLSG 478 (574)
T ss_pred HHHHhheeEEcccchhhcc-cHHHHhhcCC-C--------ccCHHHHHHHHHHcCCHH-HHcCccccCchhcCCCCCCCH
Confidence 6788999999999999875 6654433211 0 11111111 111111 11112211 23455667888
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||++|||||+++|++|+|||||++||+.++..+.+.|+++. +++|+|+++|+++. + +.||++++|++|++++.|
T Consensus 479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~-~-~~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG-L-EQFDRICVMDNGQIIEQG 555 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH-H-HhCCEEEEEeCCeEEEeC
Confidence 88888888888888899999999999999999999999999886 48999999999874 4 679999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++.+
T Consensus 556 ~~~~l~~ 562 (574)
T PRK11160 556 THQELLA 562 (574)
T ss_pred CHHHHHh
Confidence 9998864
No 255
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.7e-37 Score=358.76 Aligned_cols=219 Identities=26% Similarity=0.429 Sum_probs=170.2
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
-.|+++||+|+|+. +++++|+|+|++|++||.+||+||||||||||+|+|+|+++| .+|+|.+||.+. +.
T Consensus 462 ~~I~~~~vsf~Y~~------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p-~~G~I~idg~~l~~~~~ 534 (694)
T TIGR03375 462 GEIEFRNVSFAYPG------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP-TEGSVLLDGVDIRQIDP 534 (694)
T ss_pred ceEEEEEEEEEeCC------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEhhhCCH
Confidence 36999999999852 345799999999999999999999999999999999999887 599999999864 45
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCcc--cccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRV--MFLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~--~~~de~~~~~s~ 177 (606)
..+|+.++||+|++.+++. |+.|.+.. +-.+ .+--+-..+ .+...+-..|+= -..+|....+||
T Consensus 535 ~~lr~~i~~v~Q~~~lf~~-TI~eNi~~-~~~~--------~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSg 604 (694)
T TIGR03375 535 ADLRRNIGYVPQDPRLFYG-TLRDNIAL-GAPY--------ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSG 604 (694)
T ss_pred HHHHhccEEECCChhhhhh-hHHHHHhC-CCCC--------CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCH
Confidence 6789999999999999875 66544432 1100 111111111 111111112211 133455666777
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||++|||||+++|++++||||||+||+.++..+.+.|+++.+ ++|+|+++|+++. .+.||+|++|++|++++.|
T Consensus 605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~--~~~~D~iivl~~G~i~e~G 681 (694)
T TIGR03375 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSL--LDLVDRIIVMDNGRIVADG 681 (694)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--HHhCCEEEEEeCCEEEeeC
Confidence 777777888888888999999999999999999999999998864 7999999999863 4789999999999999999
Q ss_pred ChhHHHHH
Q psy13765 258 ATDQLVNY 265 (606)
Q Consensus 258 ~~~~~~~~ 265 (606)
+++++.+.
T Consensus 682 ~~~eLl~~ 689 (694)
T TIGR03375 682 PKDQVLEA 689 (694)
T ss_pred CHHHHHHH
Confidence 99998763
No 256
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-37 Score=325.93 Aligned_cols=221 Identities=22% Similarity=0.293 Sum_probs=174.9
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~ 102 (606)
..|+++|++++|.. +.+.+|+|+|++|++||+++|+||||||||||+++|+|+..+ +.+|+|.++|.+..
T Consensus 79 ~~i~~~nls~~y~~------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 79 NVFEIRNFNFWYMN------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred ceEEEEeeEEEecC------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 46899999999842 235699999999999999999999999999999999998642 24899999998763
Q ss_pred -----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCC----cc-cccCCCC
Q psy13765 103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP----RV-MFLDEPT 172 (606)
Q Consensus 103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~----~~-~~~de~~ 172 (606)
...+++.++||||++.+++ .|+.+.+.. +.. .+ +.+..+. .-..+.+.+... ++ -..++..
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~-~~~--~~----~~~~~~~-~~~~~~~~l~~~~L~~~l~~~~~~~~ 223 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAY-GPR--NN----GINDRKI-LEKIVEKSLKSAALWDEVKDDLDKAG 223 (329)
T ss_pred ccccchHhhhccEEEEecCCccCC-CcHHHHHHh-HHH--hc----CCChHHH-HHHHHHHHHHHcCCcchhhhhhhCCc
Confidence 1356788999999999886 687555542 211 01 1222221 111111222111 11 1468899
Q ss_pred CCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 173 ~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
..+|||||||+.|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.|||+++|++|+
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~ 301 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGW 301 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999876 699999999987 4678899999999999
Q ss_pred EEEEcChhHHHH
Q psy13765 253 CLYQGATDQLVN 264 (606)
Q Consensus 253 ~~~~G~~~~~~~ 264 (606)
+++.|+++++..
T Consensus 302 i~e~g~~~~l~~ 313 (329)
T PRK14257 302 IEEAGETKTIFI 313 (329)
T ss_pred EEEeCCHHHHhc
Confidence 999999999853
No 257
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=346.05 Aligned_cols=216 Identities=25% Similarity=0.348 Sum_probs=174.0
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---- 103 (606)
.|+++||+++|+ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~--------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~i~~~~~~ 74 (501)
T PRK11288 4 YLSFDGIGKTFP--------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP-DAGSILIDGQEMRFASTT 74 (501)
T ss_pred eEEEeeeEEEEC--------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEECCCCCHH
Confidence 589999999872 35699999999999999999999999999999999999876 59999999986531
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhH
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKR 182 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~kr 182 (606)
..+++.++||+|++.+++.+|+.+.+........ . +.... -+++++.-+.+.+.-. -..|.+...||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~-~---~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qr 148 (501)
T PRK11288 75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHK-G---GIVNRRLLNYEAREQLEHLGVD--IDPDTPLKYLSIGQRQM 148 (501)
T ss_pred HHHhCCEEEEEechhccCCCCHHHHHHhcccccc-c---CCCCHHHHHHHHHHHHHHcCCC--CCcCCchhhCCHHHHHH
Confidence 2346789999999999999999776654211110 0 00111 2234443333333221 14588889999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|+++..++.
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999888999999999987 56789999999999999876653
No 258
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.5e-37 Score=346.37 Aligned_cols=218 Identities=19% Similarity=0.301 Sum_probs=173.7
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCccEEEECCccCCh---h
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN-GVTGQILTNGHSRNI---N 104 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~-~~~G~I~~~G~~~~~---~ 104 (606)
|+++||+++| +++++|+|+|+++++||+++|+||||||||||+++|+|+.++ +.+|+|.++|++... .
T Consensus 2 l~i~~l~~~~--------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~ 73 (500)
T TIGR02633 2 LEMKGIVKTF--------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIR 73 (500)
T ss_pred EEEEeEEEEe--------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHH
Confidence 7899999987 235699999999999999999999999999999999999765 258999999986532 1
Q ss_pred -hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc--ccCCCCCCCCchhh
Q psy13765 105 -AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM--FLDEPTTSNPNDQK 180 (606)
Q Consensus 105 -~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~--~~de~~~~~s~g~~ 180 (606)
..++.++||+|++.+++.+|+.+.+.. +....... +..... .++|+ .+++..-.+- ..+.+...||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~-~~~~~~~~--~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~~LSgG~~ 147 (500)
T TIGR02633 74 DTERAGIVIIHQELTLVPELSVAENIFL-GNEITLPG--GRMAYNAMYLRA---KNLLRELQLDADNVTRPVGDYGGGQQ 147 (500)
T ss_pred HHHhCCEEEEeeccccCCCCcHHHHHHh-hccccccc--cccCHHHHHHHH---HHHHHHcCCCCCcccCchhhCCHHHH
Confidence 234679999999999999999776643 21100000 001111 12333 3333333332 23577889999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
|||.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|+++..|+++
T Consensus 148 qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 226 (500)
T TIGR02633 148 QLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMS 226 (500)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCcc
Confidence 9999999999999999999999999999999999999999888999999999976 577899999999999999998876
Q ss_pred H
Q psy13765 261 Q 261 (606)
Q Consensus 261 ~ 261 (606)
+
T Consensus 227 ~ 227 (500)
T TIGR02633 227 T 227 (500)
T ss_pred c
Confidence 4
No 259
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.8e-37 Score=358.85 Aligned_cols=217 Identities=26% Similarity=0.403 Sum_probs=166.9
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
-.|+++||+|+|+.+ .++++|+|+|++++|||.+||+||||||||||+|+|+|+++| .+|+|.+||++. +.
T Consensus 477 ~~I~~~nVsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~idg~~i~~~~~ 550 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR-----PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP-TGGQVLLDGVPLVQYDH 550 (711)
T ss_pred CeEEEEEEEEECCCC-----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCEEEECCEEHHhcCH
Confidence 369999999998532 236799999999999999999999999999999999999887 599999999864 45
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHH---HHHhc-CCc-c-cccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIA---LELIN-NPR-V-MFLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia---~~L~~-~~~-~-~~~de~~~~~s~ 177 (606)
..+++.++||+|++.+++. |+.|.+.. |..+. +-.+-+++.-. .+.+. -|+ + ...+|....+||
T Consensus 551 ~~lr~~i~~v~Q~~~lF~g-TIreNI~~-g~~~~--------~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 620 (711)
T TIGR00958 551 HYLHRQVALVGQEPVLFSG-SVRENIAY-GLTDT--------PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620 (711)
T ss_pred HHHHhhceEEecCcccccc-CHHHHHhc-CCCCC--------CHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence 6788999999999999875 66554432 22211 11111111100 11111 121 1 134555667888
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||++|||||+++|+|++||||||+||+.++..+.+ .. ..+++|+|+++|+++. .+.+|+|++|++|++++.|
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~--i~~aD~IivL~~G~ive~G 695 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLST--VERADQILVLKKGSVVEMG 695 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHH--HHhCCEEEEEECCEEEEee
Confidence 88888888888899999999999999999999999888 22 2358999999999863 4789999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++.+
T Consensus 696 t~~eL~~ 702 (711)
T TIGR00958 696 THKQLME 702 (711)
T ss_pred CHHHHHh
Confidence 9999865
No 260
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.6e-37 Score=348.20 Aligned_cols=224 Identities=22% Similarity=0.344 Sum_probs=178.1
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CccEEEECCccCCh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG----VTGQILTNGHSRNI 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~----~~G~I~~~G~~~~~ 103 (606)
.|+++|++++|+.+ .+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.++. .+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~~~----~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 5 LLAIENLSVAFRQQ----QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred eEEEeceEEEecCC----CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEeccc
Confidence 58999999998421 11357999999999999999999999999999999999998752 58999999986532
Q ss_pred ---h---hhc-ccEEEEccCCC--CCCCCcHHHHHHHc-CCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCC
Q psy13765 104 ---N---AFR-RVSCYIQQDDR--LQPLLTIENVMSLL-GLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEP 171 (606)
Q Consensus 104 ---~---~~~-~~~~yv~Q~~~--l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~ 171 (606)
. ..+ +.+|||+|++. +.+.+|+++.+... .+. .+++..+ ++|+.-+.+.+.-++.. .+|.+
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH-------RGMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 1 123 57999999975 66777887765421 110 0123332 35554444444332221 45889
Q ss_pred CCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 172 ~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
...|||||||||.||+||+.+|++|+|||||+|||+.++..+.++|++++++ |+|||++||++. .+..+|||+++|++
T Consensus 154 ~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~ 232 (529)
T PRK15134 154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQN 232 (529)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999875 899999999987 46789999999999
Q ss_pred CcEEEEcChhHHH
Q psy13765 251 GQCLYQGATDQLV 263 (606)
Q Consensus 251 G~~~~~G~~~~~~ 263 (606)
|++++.|+++++.
T Consensus 233 G~i~~~g~~~~~~ 245 (529)
T PRK15134 233 GRCVEQNRAATLF 245 (529)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
No 261
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.2e-37 Score=306.23 Aligned_cols=198 Identities=20% Similarity=0.335 Sum_probs=158.3
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR 107 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~ 107 (606)
.++++|++++++ ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+......+
T Consensus 2 ~l~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~ 72 (207)
T PRK13539 2 MLEGEDLACVRG--------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP-AAGTIKLDGGDIDDPDVA 72 (207)
T ss_pred EEEEEeEEEEEC--------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEeCcchhhH
Confidence 589999999873 35699999999999999999999999999999999999776 599999999764322367
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIA 186 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA 186 (606)
+.++|++|++.+++.+|+.+.+.... ...+ . +.+++. +++..-++- ..|.+...+|+|||||+.||
T Consensus 73 ~~~~~~~~~~~~~~~~tv~~~l~~~~--~~~~-----~---~~~~~~---~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 139 (207)
T PRK13539 73 EACHYLGHRNAMKPALTVAENLEFWA--AFLG-----G---EELDIA---AALEAVGLAPLAHLPFGYLSAGQKRRVALA 139 (207)
T ss_pred hhcEEecCCCcCCCCCcHHHHHHHHH--HhcC-----C---cHHHHH---HHHHHcCCHHHHcCChhhcCHHHHHHHHHH
Confidence 78999999998888899876654321 0000 0 112322 222222221 45788889999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
+||+.+|++++|||||+|||+.+...+.+.|++++++|+|||+++|++.. +.. |+++.+..
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~--~~~~~~~~ 200 (207)
T PRK13539 140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-LPG--ARELDLGP 200 (207)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hcc--CcEEeecC
Confidence 99999999999999999999999999999999998889999999999764 543 88887743
No 262
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=354.12 Aligned_cols=224 Identities=21% Similarity=0.313 Sum_probs=177.0
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC------
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR------ 101 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~------ 101 (606)
.|+++||+++|..+ .+.+++|+||||++++||++||+||||||||||+|+|+|+.++ .+|+|.++|...
T Consensus 12 ~l~v~~l~~~y~~~----~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p-~~G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 12 VLAVENLNIAFMQE----QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ-AGGLVQCDKMLLRRRSRQ 86 (623)
T ss_pred eEEEeceEEEecCC----CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CCeEEEECCEEecccccc
Confidence 59999999998421 1235799999999999999999999999999999999999876 489999988532
Q ss_pred -------Chh---hhc-ccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc-c
Q psy13765 102 -------NIN---AFR-RVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV-M 166 (606)
Q Consensus 102 -------~~~---~~~-~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~-~ 166 (606)
+.. .++ +.+|||+|++ .+++.+||.+.+.. ++.. + .+++.-+ ++|+.-+.+.+.-++- -
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~-~~~~--~---~~~~~~~~~~~~~~~l~~~gL~~~~~ 160 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAE-SIRL--H---QGASREEAMVEAKRMLDQVRIPEAQT 160 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHH-HHHH--h---cCCCHHHHHHHHHHHHHHCCCCChhh
Confidence 111 222 4699999998 67888999776543 1110 0 0123222 3444333333322211 2
Q ss_pred ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhccee
Q psy13765 167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQV 245 (606)
Q Consensus 167 ~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v 245 (606)
.+|.+...|||||||||.||+||+.+|++|||||||+|||+.++.++.++|++++++ |+|||++|||+. .+.++|||+
T Consensus 161 ~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri 239 (623)
T PRK10261 161 ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRV 239 (623)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEE
Confidence 468899999999999999999999999999999999999999999999999999865 999999999976 577899999
Q ss_pred eeecCCcEEEEcChhHHH
Q psy13765 246 YLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 246 ~~L~~G~~~~~G~~~~~~ 263 (606)
++|++|++++.|+++++.
T Consensus 240 ~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 240 LVMYQGEAVETGSVEQIF 257 (623)
T ss_pred EEeeCCeecccCCHHHhh
Confidence 999999999999988764
No 263
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.2e-37 Score=303.97 Aligned_cols=195 Identities=23% Similarity=0.343 Sum_probs=155.0
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--hhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--NAF 106 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--~~~ 106 (606)
++++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~ 71 (198)
T TIGR01189 1 LAARNLACSR--------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP-DSGEVRWNGTALAEQRDEP 71 (198)
T ss_pred CEEEEEEEEE--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEEcccchHHh
Confidence 4689999986 345799999999999999999999999999999999999876 59999999976431 335
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA 186 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA 186 (606)
++.++|++|++.+++.+|+.+.+.... .. .+.+++++.-+.+.+.-. -.+|.+...+|+|||||+.||
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~--~~--------~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la 139 (198)
T TIGR01189 72 HRNILYLGHLPGLKPELSALENLHFWA--AI--------HGGAQRTIEDALAAVGLT--GFEDLPAAQLSAGQQRRLALA 139 (198)
T ss_pred hhheEEeccCcccccCCcHHHHHHHHH--HH--------cCCcHHHHHHHHHHcCCH--HHhcCChhhcCHHHHHHHHHH
Confidence 678999999999988889877665321 00 011223333222222211 135778889999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeee
Q psy13765 187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYL 247 (606)
Q Consensus 187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 247 (606)
+|++.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++.. -.+|+++.
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 140 RLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 99999999999999999999999999999999998889999999999864 35677764
No 264
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.9e-37 Score=346.95 Aligned_cols=218 Identities=26% Similarity=0.357 Sum_probs=171.6
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC--CCCCccEEEECC--------
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR--SNGVTGQILTNG-------- 98 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~--~~~~~G~I~~~G-------- 98 (606)
|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+. ++ .+|+|.++|
T Consensus 1 l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p-~~G~i~~~~~~~~~~~~ 71 (520)
T TIGR03269 1 IEVKNLTKKF--------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP-TSGRIIYHVALCEKCGY 71 (520)
T ss_pred CEEEEEEEEE--------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC-CceEEEEeccccccccc
Confidence 4789999987 2357999999999999999999999999999999999986 34 589999972
Q ss_pred ---------------ccC----------Ch---hhhcccEEEEccC-CCCCCCCcHHHHHHHcCCccccCCccccCChHH
Q psy13765 99 ---------------HSR----------NI---NAFRRVSCYIQQD-DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ 149 (606)
Q Consensus 99 ---------------~~~----------~~---~~~~~~~~yv~Q~-~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq 149 (606)
.+. .. ...++.++||+|+ +.+++.+|+.+.+.. ++.. .+.+..+
T Consensus 72 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~-~~~~------~~~~~~~ 144 (520)
T TIGR03269 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLE-ALEE------IGYEGKE 144 (520)
T ss_pred cccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHH-HHHH------cCCCHHH
Confidence 111 00 1245679999997 678888898665543 1111 0122222
Q ss_pred -HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q psy13765 150 -KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRT 226 (606)
Q Consensus 150 -rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~t 226 (606)
++|+. +++..-.+- .+|.+...|||||||||.||+||+.+|++|+|||||+|||+.++..+.++|+++++ .|+|
T Consensus 145 ~~~~~~---~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t 221 (520)
T TIGR03269 145 AVGRAV---DLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGIS 221 (520)
T ss_pred HHHHHH---HHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcE
Confidence 33443 233322331 45788899999999999999999999999999999999999999999999999976 4999
Q ss_pred EEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHHH
Q psy13765 227 IICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYL 266 (606)
Q Consensus 227 ii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f 266 (606)
||++|||+. .+.++||++++|++|++++.|+++++.+.+
T Consensus 222 viivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 222 MVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred EEEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 999999987 467899999999999999999988876543
No 265
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.6e-37 Score=345.88 Aligned_cols=221 Identities=20% Similarity=0.334 Sum_probs=176.7
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEEC-Ccc---CC
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN-GHS---RN 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~-G~~---~~ 102 (606)
..|+++||++.|+.. +.+.+.+|+|+||+|++||+++|+||||||||||+|+|+|+.++ .+|+|.++ |.+ ..
T Consensus 278 ~~l~~~~l~~~~~~~---~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 278 PIIKVRNVSKRYISV---DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP-TSGEVNVRVGDEWVDMT 353 (520)
T ss_pred ceEEEeccEEEeccC---CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEEecCCcccccc
Confidence 369999999997421 01235699999999999999999999999999999999999876 59999996 532 11
Q ss_pred ------hhhhcccEEEEccCCCCCCCCcHHHHHHH-cCCccccCCccccCChH-HHHHHHHHHHHhcCCccc------cc
Q psy13765 103 ------INAFRRVSCYIQQDDRLQPLLTIENVMSL-LGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM------FL 168 (606)
Q Consensus 103 ------~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~-~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~------~~ 168 (606)
....++.++|++|++.+++.+|+.+.+.. +++ + .+.. .++++. +++..-.+- .+
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~----~-----~~~~~~~~~~~---~~l~~~~l~~~~~~~~~ 421 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL----E-----LPDELARMKAV---ITLKMVGFDEEKAEEIL 421 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc----C-----CCHHHHHHHHH---HHHHhCCCCCccchhhh
Confidence 11345679999999999999999776653 221 0 1111 123332 333332331 46
Q ss_pred CCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeee
Q psy13765 169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYL 247 (606)
Q Consensus 169 de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~ 247 (606)
|.+...|||||||||.||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++|||+. .+.++||++++
T Consensus 422 ~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~ 500 (520)
T TIGR03269 422 DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAAL 500 (520)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEE
Confidence 8899999999999999999999999999999999999999999999999999865 899999999987 57789999999
Q ss_pred ecCCcEEEEcChhHHHH
Q psy13765 248 LSGGQCLYQGATDQLVN 264 (606)
Q Consensus 248 L~~G~~~~~G~~~~~~~ 264 (606)
|++|+++..|+++++.+
T Consensus 501 l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 501 MRDGKIVKIGDPEEIVE 517 (520)
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999887654
No 266
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.9e-37 Score=304.20 Aligned_cols=199 Identities=24% Similarity=0.350 Sum_probs=163.2
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~ 104 (606)
.++++|++++++. ..+.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.. ..
T Consensus 6 ~l~~~~l~~~~~~------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~ 78 (207)
T cd03369 6 EIEVENLSVRYAP------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA-EEGKIEIDGIDISTIPLE 78 (207)
T ss_pred eEEEEEEEEEeCC------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCeEEECCEEhHHCCHH
Confidence 5889999998742 124699999999999999999999999999999999999876 5999999998642 23
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~ 184 (606)
..++.++|++|++.+++. |+.+.+.... . .. +++ +. +.+. ++++...+|+||+||+.
T Consensus 79 ~~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~----~~--~~~-~~---~~l~------~~~~~~~LS~G~~qrv~ 135 (207)
T cd03369 79 DLRSSLTIIPQDPTLFSG-TIRSNLDPFD------E----YS--DEE-IY---GALR------VSEGGLNLSQGQRQLLC 135 (207)
T ss_pred HHHhhEEEEecCCcccCc-cHHHHhcccC------C----CC--HHH-HH---HHhh------ccCCCCcCCHHHHHHHH
Confidence 456789999999988874 8876654211 0 11 111 11 1111 46788899999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
|||||+.+|++++|||||+|||+.++..+.+.|++++ +|+|+|++||++.. +. .+|++++|++|+++..|++
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999999999999985 48999999999874 54 4999999999999988763
No 267
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.5e-37 Score=358.11 Aligned_cols=216 Identities=27% Similarity=0.403 Sum_probs=171.6
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~ 104 (606)
.|+++||+|+|+ .++++|+|+|++|++||.+||+||||||||||+|+|+|+++| .+|+|.+||.+. +..
T Consensus 473 ~I~~~~vsf~y~-------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~~ 544 (708)
T TIGR01193 473 DIVINDVSYSYG-------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA-RSGEILLNGFSLKDIDRH 544 (708)
T ss_pred cEEEEEEEEEcC-------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CCcEEEECCEEHHHcCHH
Confidence 699999999984 235799999999999999999999999999999999999887 599999999764 557
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH----HHHHHhcCCcc--cccCCCCCCCCch
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS----IALELINNPRV--MFLDEPTTSNPND 178 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~----ia~~L~~~~~~--~~~de~~~~~s~g 178 (606)
.+|+.+|||+|++.+++. |+.|.+..-.-. +.+-.+-.++. +...+...|+= ....|...+||||
T Consensus 545 ~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~--------~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG 615 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFSG-SILENLLLGAKE--------NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615 (708)
T ss_pred HHHHheEEEecCceehhH-HHHHHHhccCCC--------CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence 789999999999999876 665544331000 12222222221 11111122221 1345566778999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
||||++|||||+++|++|+||||||+||+.++..+.+.|+++ +|+|+|+++|+++. .+.+|++++|++|++++.|+
T Consensus 616 QrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~--~~~~D~i~~l~~G~i~~~G~ 691 (708)
T TIGR01193 616 QKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSV--AKQSDKIIVLDHGKIIEQGS 691 (708)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHH--HHcCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999875 47999999999863 47899999999999999999
Q ss_pred hhHHHH
Q psy13765 259 TDQLVN 264 (606)
Q Consensus 259 ~~~~~~ 264 (606)
++++.+
T Consensus 692 ~~~L~~ 697 (708)
T TIGR01193 692 HDELLD 697 (708)
T ss_pred HHHHHh
Confidence 998865
No 268
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-39 Score=302.21 Aligned_cols=220 Identities=23% Similarity=0.417 Sum_probs=177.4
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NINA 105 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~~ 105 (606)
++++||+++| +.+.+|+|+|.+|++|.+++++|||||||||||.+++++.+. .+|+|.++|.+. +.++
T Consensus 2 I~i~nv~K~y--------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~-d~G~i~i~g~~~~~~~s~~ 72 (252)
T COG4604 2 ITIENVSKSY--------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK-DSGEITIDGLELTSTPSKE 72 (252)
T ss_pred eeehhhhHhh--------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc-cCceEEEeeeecccCChHH
Confidence 6789999886 668899999999999999999999999999999999999876 599999999864 3467
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I 185 (606)
+.+.++.+-|+.+....+||+++... |.-+.- -+.|....++.+.-|.+.+.-.++ -|+-...||||||||.-|
T Consensus 73 LAk~lSILkQ~N~i~~rlTV~dLv~F-GRfPYS---qGRlt~eD~~~I~~aieyl~L~~l--~dryLd~LSGGQrQRAfI 146 (252)
T COG4604 73 LAKKLSILKQENHINSRLTVRDLVGF-GRFPYS---QGRLTKEDRRIINEAIEYLHLEDL--SDRYLDELSGGQRQRAFI 146 (252)
T ss_pred HHHHHHHHHhhchhhheeEHHHHhhc-CCCccc---CCCCchHHHHHHHHHHHHhcccch--HHHhHHhcccchhhhhhh
Confidence 88889999999999889998765432 222111 122344445555555555443322 233334466666666668
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
|+.++++.+.++||||.++||...+.++|+.|++++++ |+||+++.||... ...++|+|+-|++|+++..|+++++.+
T Consensus 147 AMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 147 AMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred heeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHHHhcC
Confidence 88888889999999999999999999999999999987 9999999999885 568999999999999999999999864
No 269
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.2e-37 Score=308.72 Aligned_cols=212 Identities=25% Similarity=0.403 Sum_probs=161.6
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--- 102 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--- 102 (606)
...++++|++++|+.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..
T Consensus 9 ~~~l~~~~l~~~~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~ 82 (226)
T cd03248 9 KGIVKFQNVTFAYPTR-----PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP-QGGQVLLDGKPISQYE 82 (226)
T ss_pred CceEEEEEEEEEeCCC-----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCcEEEECCCchHHcC
Confidence 3468999999998421 124699999999999999999999999999999999999876 5999999997643
Q ss_pred hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCC--cc-cccCCCCCCCCchh
Q psy13765 103 INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP--RV-MFLDEPTTSNPNDQ 179 (606)
Q Consensus 103 ~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~--~~-~~~de~~~~~s~g~ 179 (606)
....++.++|++|++.+++ .|+.+.+.. +... .....+..- ..+.. +.+++..- .+ -.++++...+|+||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~-~tv~~nl~~-~~~~---~~~~~~~~~-~~~~~-~~~~l~~l~~gl~~~~~~~~~~LSgG~ 155 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFA-RSLQDNIAY-GLQS---CSFECVKEA-AQKAH-AHSFISELASGYDTEVGEKGSQLSGGQ 155 (226)
T ss_pred HHHHHhhEEEEecccHHHh-hhHHHHhcc-ccCC---CCHHHHHHH-HHHcC-cHHHHHhccccccchhhcCCCcCCHHH
Confidence 2345678999999998876 477665532 2111 000001000 01111 11222221 12 14688889999999
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
|||+.||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++. + ..||++++|++|++
T Consensus 156 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~i 226 (226)
T cd03248 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCEEEEecCCcC
Confidence 9999999999999999999999999999999999999999875 6899999999874 5 45999999999874
No 270
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-37 Score=346.44 Aligned_cols=224 Identities=21% Similarity=0.344 Sum_probs=176.0
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---- 103 (606)
.|+++||++.|+. .+++.+|+|+|++|++||+++|+||||||||||+|+|+|+.+++.+|+|.++|++...
T Consensus 259 ~l~~~~l~~~~~~-----~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 259 ILEVRNLTAWDPV-----NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred eEEEecCcccccc-----ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHH
Confidence 5899999987631 1235699999999999999999999999999999999999863358999999976531
Q ss_pred hhhcccEEEEccCC---CCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc--ccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDD---RLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM--FLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~---~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~--~~de~~~~~s~ 177 (606)
...++.++|++|++ .+++.+|+.+.+..--...... .+..+.. .++++ .+++..-.+- ..|.+...|||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~~LSg 408 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTG--GSRIDDAAELKTI---LESIQRLKVKTASPELAIARLSG 408 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhcc--CcccChHHHHHHH---HHHHHhcCccCCCcccccccCCH
Confidence 23356799999995 4778889877654311100000 0001211 23333 3333333342 46889999999
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
||||||.||+||+.+|++|+|||||+|||+.++..+.++|++++++|+|||++|||++ .+.++||++++|++|+++..|
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999999999999888999999999986 577899999999999999999
Q ss_pred ChhHH
Q psy13765 258 ATDQL 262 (606)
Q Consensus 258 ~~~~~ 262 (606)
+++++
T Consensus 488 ~~~~~ 492 (506)
T PRK13549 488 INHNL 492 (506)
T ss_pred ccccC
Confidence 87654
No 271
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.6e-37 Score=378.76 Aligned_cols=222 Identities=23% Similarity=0.336 Sum_probs=185.9
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INA 105 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~ 105 (606)
.|+++||+++|.. +++.+|+|||++|++||+++|+||||||||||+|+|+|..++ .+|+|.++|++.. ..+
T Consensus 1937 ~L~v~nLsK~Y~~------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p-tsG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1937 ILRLNELTKVYSG------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV-TSGDATVAGKSILTNISD 2009 (2272)
T ss_pred eEEEEEEEEEECC------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEECCEECcchHHH
Confidence 5899999999731 236799999999999999999999999999999999999877 5999999998763 234
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl 183 (606)
.++.+||++|++.+++.+|+.|.+...+. ..+++..+ ++++ .+++..-++- ..|.+...+||||||||
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~-------l~g~~~~~~~~~v---~~lLe~lgL~~~~dk~~~~LSGGqKqRL 2079 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYAR-------LRGVPAEEIEKVA---NWSIQSLGLSLYADRLAGTYSGGNKRKL 2079 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHH-------hcCCCHHHHHHHH---HHHHHHcCCHHHhcCChhhCCHHHHHHH
Confidence 56789999999999999999888765321 11122222 2333 2333333332 56888999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
+||+||+.+|+|++|||||+|||+.+++.+.+.|++++++|+|||+|||+++ ++.++|||+++|++|+++..|+++++.
T Consensus 2080 slA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257 2080 STAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLK 2158 (2272)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999888999999999987 578999999999999999999999998
Q ss_pred HHHH
Q psy13765 264 NYLS 267 (606)
Q Consensus 264 ~~f~ 267 (606)
..|.
T Consensus 2159 ~~~g 2162 (2272)
T TIGR01257 2159 SKFG 2162 (2272)
T ss_pred HHhC
Confidence 8764
No 272
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=3e-37 Score=308.98 Aligned_cols=201 Identities=24% Similarity=0.390 Sum_probs=153.8
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~ 108 (606)
+.++|+++.| +++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...
T Consensus 23 l~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~----- 88 (224)
T cd03220 23 LGILGRKGEV--------GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP-DSGTVTVRGRVSSL----- 88 (224)
T ss_pred hhhhhhhhhc--------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEchh-----
Confidence 4455555543 557899999999999999999999999999999999999876 59999999975421
Q ss_pred cEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH
Q psy13765 109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL 187 (606)
Q Consensus 109 ~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~ 187 (606)
..+...+.+.+|+.+.+..... . .+.+..+ ++++.-+.+++.-++ .+|.+...+|+|||||++||+
T Consensus 89 ----~~~~~~~~~~~tv~enl~~~~~-~------~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgG~~qrv~lar 155 (224)
T cd03220 89 ----LGLGGGFNPELTGRENIYLNGR-L------LGLSRKEIDEKIDEIIEFSELGD--FIDLPVKTYSSGMKARLAFAI 155 (224)
T ss_pred ----hcccccCCCCCcHHHHHHHHHH-H------cCCCHHHHHHHHHHHHHHcCChh--hhhCChhhCCHHHHHHHHHHH
Confidence 1112334567888766543210 0 0112222 223332223322111 357788899999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++|++++.|
T Consensus 156 al~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 156 ATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999877899999999976 567889999999999998765
No 273
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.8e-37 Score=301.50 Aligned_cols=194 Identities=21% Similarity=0.374 Sum_probs=156.4
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hhhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--INAF 106 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~~~ 106 (606)
|+++|++++++ ++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.. ...+
T Consensus 2 l~~~~l~~~~~--------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~ 72 (200)
T PRK13540 2 LDVIELDFDYH--------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP-EKGEILFERQSIKKDLCTY 72 (200)
T ss_pred EEEEEEEEEeC--------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeeEEECCCccccCHHHH
Confidence 78999999873 35699999999999999999999999999999999999876 5999999998653 2456
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA 186 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA 186 (606)
++.++|++|+..+++..|+.+.+.. +... +..+ +++.-+.+.+.-++ ..|.+...+|+|||||+.||
T Consensus 73 ~~~i~~~~q~~~~~~~~tv~~~~~~-~~~~---------~~~~-~~~~~~l~~~~l~~--~~~~~~~~LS~G~~~rv~la 139 (200)
T PRK13540 73 QKQLCFVGHRSGINPYLTLRENCLY-DIHF---------SPGA-VGITELCRLFSLEH--LIDYPCGLLSSGQKRQVALL 139 (200)
T ss_pred HhheEEeccccccCcCCCHHHHHHH-HHhc---------Ccch-HHHHHHHHHcCCch--hhhCChhhcCHHHHHHHHHH
Confidence 7789999999998888999776653 2110 0111 22222222222222 45788899999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee
Q psy13765 187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY 246 (606)
Q Consensus 187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~ 246 (606)
+|++.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++.. ...+|...
T Consensus 140 ral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 140 RLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 99999999999999999999999999999999998789999999999763 36677644
No 274
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-37 Score=294.86 Aligned_cols=168 Identities=33% Similarity=0.607 Sum_probs=142.9
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA 105 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~ 105 (606)
++++|++++++. .++.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.. ...
T Consensus 1 l~~~~l~~~~~~------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~ 73 (171)
T cd03228 1 IEFKNVSFSYPG------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVDLRDLDLES 73 (171)
T ss_pred CEEEEEEEEcCC------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEEhhhcCHHH
Confidence 468999998732 113699999999999999999999999999999999999876 5999999997643 234
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I 185 (606)
+++.++|++|++.+++ .|+.+.+ ||||||||+++|++|+.+
T Consensus 74 ~~~~i~~~~~~~~~~~-~t~~e~l---------------LS~G~~~rl~la~al~~~----------------------- 114 (171)
T cd03228 74 LRKNIAYVPQDPFLFS-GTIRENI---------------LSGGQRQRIAIARALLRD----------------------- 114 (171)
T ss_pred HHhhEEEEcCCchhcc-chHHHHh---------------hCHHHHHHHHHHHHHhcC-----------------------
Confidence 5678999999998776 4776543 888888888876666666
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++.. +.. ||++++|++|+
T Consensus 115 -------p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~~~~l~~g~ 171 (171)
T cd03228 115 -------PPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLST-IRD-ADRIIVLDDGR 171 (171)
T ss_pred -------CCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-HHh-CCEEEEEcCCC
Confidence 999999999999999999999999999964 7999999999874 555 99999999885
No 275
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-36 Score=311.10 Aligned_cols=217 Identities=19% Similarity=0.298 Sum_probs=169.4
Q ss_pred eEEEEEeeEEEEecCCc-----------c-cccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEE
Q psy13765 27 IEIKFKDLTYTVSTGLG-----------F-KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI 94 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~-----------~-~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I 94 (606)
+.|+++||+++|..... + ....+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p-~~G~I 81 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP-TVGKV 81 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CceEE
Confidence 57899999999865211 1 12446799999999999999999999999999999999999876 58999
Q ss_pred EECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCC
Q psy13765 95 LTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTT 173 (606)
Q Consensus 95 ~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~ 173 (606)
.++|+ +++++|+..+.+.+|+.+.+...... .+....+.+ ..+..++....+ -..+.+..
T Consensus 82 ~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~-------~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~ 142 (264)
T PRK13546 82 DRNGE----------VSVIAISAGLSGQLTGIENIEFKMLC-------MGFKRKEIK--AMTPKIIEFSELGEFIYQPVK 142 (264)
T ss_pred EECCE----------EeEEecccCCCCCCcHHHHHHHHHHH-------cCCCHHHHH--HHHHHHHHHcCCchhhcCCcc
Confidence 99984 35667777777778886665421100 011111111 111112211111 14577888
Q ss_pred CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
.+|+|||||+.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|++
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i 221 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKL 221 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999878999999999976 57789999999999999
Q ss_pred EEEcChhHHHH
Q psy13765 254 LYQGATDQLVN 264 (606)
Q Consensus 254 ~~~G~~~~~~~ 264 (606)
+..|+++++.+
T Consensus 222 ~~~g~~~~~~~ 232 (264)
T PRK13546 222 KDYGELDDVLP 232 (264)
T ss_pred EEeCCHHHHHH
Confidence 99999988754
No 276
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=316.63 Aligned_cols=226 Identities=23% Similarity=0.333 Sum_probs=173.3
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC----CCccEEEECCccCC
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHSRN 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~----~~~G~I~~~G~~~~ 102 (606)
..|+++||++.+. .+.+|+|+|++|++||+++|+||||||||||+++|+|+.++ +.+|+|.++|.+..
T Consensus 44 ~~l~i~nl~~~~~--------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 44 AKLSVEDLDVYYG--------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred ceEEEEEEEEEeC--------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4689999999873 35699999999999999999999999999999999999752 35899999997643
Q ss_pred -----hhhhcccEEEEccCCCCCCCCcHHHHHHH-cCCccccCCc----cccCChHH--HHHHHHHHHHhcCC-cc-ccc
Q psy13765 103 -----INAFRRVSCYIQQDDRLQPLLTIENVMSL-LGLDESQNTR----SSQLSGGQ--KKRLSIALELINNP-RV-MFL 168 (606)
Q Consensus 103 -----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~-~gl~~~~~~~----~~~lSgGq--rqRv~ia~~L~~~~-~~-~~~ 168 (606)
....++.++|++|++.+++. |+.+.+.. .......++. ....+..+ ++++.-+...+.-+ .+ -.+
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 23456789999999988874 88665543 1111100100 00122222 23332222222111 01 145
Q ss_pred CCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhccee-ee
Q psy13765 169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV-YL 247 (606)
Q Consensus 169 de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v-~~ 247 (606)
|++...+|+|||||+.||+||+++|+||||||||+|||+.++..+.++|+++++ ++|||+++|+++ .+.++||++ ++
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~ 272 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVF 272 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEE
Confidence 888999999999999999999999999999999999999999999999999977 489999999986 467899997 57
Q ss_pred ecCCcEEEEcChhHHH
Q psy13765 248 LSGGQCLYQGATDQLV 263 (606)
Q Consensus 248 L~~G~~~~~G~~~~~~ 263 (606)
|++|++++.|+++++.
T Consensus 273 l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 273 LTGGELVEYDDTDKIF 288 (305)
T ss_pred ecCCEEEEeCCHHHHH
Confidence 7999999999988764
No 277
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.8e-37 Score=345.26 Aligned_cols=225 Identities=23% Similarity=0.318 Sum_probs=176.6
Q ss_pred EEEEEeeEEEEecCCc---ccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-
Q psy13765 28 EIKFKDLTYTVSTGLG---FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~---~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~- 103 (606)
.|+++||++.|+.+.. .+.+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ .+|+|.++|++...
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN--SQGEIWFDGQPLHNL 352 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCcEEEECCEEcccc
Confidence 5999999999842100 00013579999999999999999999999999999999999974 48999999976431
Q ss_pred --h---hhcccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc--ccCCCCC
Q psy13765 104 --N---AFRRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM--FLDEPTT 173 (606)
Q Consensus 104 --~---~~~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~--~~de~~~ 173 (606)
. .+++.++||+|++ .+++.+|+.+.+..- +. ... ..++..+ ++++. +++..-.+- ..|.+..
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~-~~--~~~--~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~ 424 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEG-LR--VHQ--PTLSAAQREQQVI---AVMEEVGLDPETRHRYPA 424 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHH-HH--hcc--ccCChHHHHHHHH---HHHHHcCCCHHHHhcCCc
Confidence 1 2356799999997 478888997766431 10 000 0122222 33433 333332331 4688999
Q ss_pred CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
.|||||||||.||+||+.+|++|+|||||+|||+.++..+.++|++++++ |+|||++|||+. .+.++||++++|++|+
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGE 503 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCE
Confidence 99999999999999999999999999999999999999999999999875 899999999986 4778999999999999
Q ss_pred EEEEcChhHHH
Q psy13765 253 CLYQGATDQLV 263 (606)
Q Consensus 253 ~~~~G~~~~~~ 263 (606)
++..|+++++.
T Consensus 504 i~~~~~~~~~~ 514 (529)
T PRK15134 504 VVEQGDCERVF 514 (529)
T ss_pred EEEEcCHHHHh
Confidence 99999988874
No 278
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=8.9e-37 Score=374.14 Aligned_cols=222 Identities=23% Similarity=0.345 Sum_probs=183.9
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--h
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--I 103 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~ 103 (606)
...|+++||++.++. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++.. .
T Consensus 926 ~~~L~I~nLsK~y~~------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P-tsG~I~i~G~dI~~~~ 998 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP-TSGTVLVGGKDIETNL 998 (2272)
T ss_pred CceEEEEeEEEEecC------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC-CceEEEECCEECcchH
Confidence 357999999999732 246799999999999999999999999999999999999877 5999999998753 2
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKK 181 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k 181 (606)
.+.|+.+||++|++.+++.+||.+.+..... .++.+..+ ++++. +++..-++- ..|.+...|||||||
T Consensus 999 ~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~-------lkg~~~~~~~~~v~---~lL~~vgL~~~~~~~~~~LSGGqKQ 1068 (2272)
T TIGR01257 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQ-------LKGRSWEEAQLEME---AMLEDTGLHHKRNEEAQDLSGGMQR 1068 (2272)
T ss_pred HHHhhcEEEEecCCcCCCCCCHHHHHHHHHH-------hcCCCHHHHHHHHH---HHHHHcCCchhhcCChhhCCHHHHH
Confidence 4567789999999999999999887764211 01122222 23333 233332332 568889999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~ 261 (606)
||+||+||+.+|++++|||||+|||+.+++.+.++|++++ +|+|||++||+++ ++..++||+++|++|+++..|++++
T Consensus 1069 RLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~ 1146 (2272)
T TIGR01257 1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLF 1146 (2272)
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999999995 5999999999987 5778999999999999999999999
Q ss_pred HHHHH
Q psy13765 262 LVNYL 266 (606)
Q Consensus 262 ~~~~f 266 (606)
+.+.|
T Consensus 1147 Lk~~~ 1151 (2272)
T TIGR01257 1147 LKNCF 1151 (2272)
T ss_pred HHHhc
Confidence 98765
No 279
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-37 Score=283.34 Aligned_cols=215 Identities=27% Similarity=0.407 Sum_probs=183.7
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---- 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---- 102 (606)
+.|+++|+++.| +..++|.||+++.++||.+.++||||||||||++.|.=+..| .+|+..+.|...+
T Consensus 1 msirv~~in~~y--------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p-~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 1 MSIQLNGINCFY--------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP-RSGTLNIAGNHFDFSKT 71 (242)
T ss_pred CceEEccccccc--------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC-CCCeEEecccccccccC
Confidence 358899999986 567899999999999999999999999999999999877665 5999999886432
Q ss_pred -----hhhhcccEEEEccCCCCCCCCcHH-HHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCC
Q psy13765 103 -----INAFRRVSCYIQQDDRLQPLLTIE-NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSN 175 (606)
Q Consensus 103 -----~~~~~~~~~yv~Q~~~l~~~ltv~-~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~ 175 (606)
..++|+.+|.|+|+-+++|.+||- ++++. -.++.++|..|.+ +-|.+|+.+-.+- ..|.-+.+|
T Consensus 72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enliea-------p~kv~gl~~~qa~--~~a~ellkrlrl~~~adr~plhl 142 (242)
T COG4161 72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA-------PCRVLGLSKDQAL--ARAEKLLKRLRLKPYADRYPLHL 142 (242)
T ss_pred ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhh-------hHHHhCCCHHHHH--HHHHHHHHHhccccccccCceec
Confidence 145788999999999999999984 44432 2345567766643 4566777776664 778888899
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
||||+|||+|||||+.+|.+|++||||+.|||+-..++++++++|+..|.|-+++||... ...+.+.+|+.|++|++++
T Consensus 143 sggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~g~ive 221 (242)
T COG4161 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVE 221 (242)
T ss_pred ccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeEe
Confidence 999999999999999999999999999999999999999999999999999999999977 4678999999999999999
Q ss_pred EcChh
Q psy13765 256 QGATD 260 (606)
Q Consensus 256 ~G~~~ 260 (606)
.|+.+
T Consensus 222 ~g~a~ 226 (242)
T COG4161 222 QGDAS 226 (242)
T ss_pred ecchh
Confidence 99864
No 280
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.1e-36 Score=344.43 Aligned_cols=218 Identities=24% Similarity=0.390 Sum_probs=165.4
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~ 104 (606)
.++++||+++|+. .++++|+|+|+++++||.++|+||||||||||+|+|+|+.++ .+|+|.+||.+. +..
T Consensus 330 ~i~~~~v~f~y~~------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~-~~G~I~i~g~~i~~~~~~ 402 (571)
T TIGR02203 330 DVEFRNVTFRYPG------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP-DSGQILLDGHDLADYTLA 402 (571)
T ss_pred eEEEEEEEEEcCC------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCEeHHhcCHH
Confidence 6999999999842 235799999999999999999999999999999999999887 589999999764 456
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCc-c-cccCCCCCCCCch
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPR-V-MFLDEPTTSNPND 178 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~-~-~~~de~~~~~s~g 178 (606)
.+++.++||+|++.+++. |+.+.+....-+ +.+--+-..+ .+-.-+-.-|+ + ...+|-...+|||
T Consensus 403 ~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~--------~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 403 SLRRQVALVSQDVVLFND-TIANNIAYGRTE--------QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred HHHhhceEEccCcccccc-cHHHHHhcCCCC--------CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 788999999999998875 554443321100 0111111111 10000111111 0 0123334567777
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
||||++||||++++|++++||||||+||+.++..+++.|++++ +++|+|++||+++ ..+.||+|++|++|+++..|+
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~ 550 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGT 550 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCC
Confidence 7777778888888899999999999999999999999999885 4799999999985 468899999999999999999
Q ss_pred hhHHHH
Q psy13765 259 TDQLVN 264 (606)
Q Consensus 259 ~~~~~~ 264 (606)
++++.+
T Consensus 551 ~~~l~~ 556 (571)
T TIGR02203 551 HNELLA 556 (571)
T ss_pred HHHHHH
Confidence 998753
No 281
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.7e-36 Score=344.26 Aligned_cols=216 Identities=25% Similarity=0.419 Sum_probs=171.2
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~ 104 (606)
.|+++|++|+|+. ++.+|+|+|+++++||.++|+||||||||||+|+|+|+.+| .+|+|.+||.+. +..
T Consensus 334 ~I~~~~vsf~y~~-------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p-~~G~I~i~g~~i~~~~~~ 405 (588)
T PRK13657 334 AVEFDDVSFSYDN-------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP-QSGRILIDGTDIRTVTRA 405 (588)
T ss_pred eEEEEEEEEEeCC-------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCEEhhhCCHH
Confidence 6999999999842 24699999999999999999999999999999999999887 599999999764 346
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHH----HHHHHHHHhcCCccc--ccCCCCCCCCch
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK----RLSIALELINNPRVM--FLDEPTTSNPND 178 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrq----Rv~ia~~L~~~~~~~--~~de~~~~~s~g 178 (606)
.+++.++||+|++.+++. |+.+.+.. +-.+ .+-.+.+ ++.+...+-..|+=+ ...|-...+|||
T Consensus 406 ~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~-~~~~--------~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 475 (588)
T PRK13657 406 SLRRNIAVVFQDAGLFNR-SIEDNIRV-GRPD--------ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475 (588)
T ss_pred HHHhheEEEecCcccccc-cHHHHHhc-CCCC--------CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence 788999999999999875 66554432 2111 1222222 222222222223211 234446678999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
||||++|||||+++|++++||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.+|++++|++|+++..|+
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~ 552 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGS 552 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999875 4799999999985 357899999999999999999
Q ss_pred hhHHHH
Q psy13765 259 TDQLVN 264 (606)
Q Consensus 259 ~~~~~~ 264 (606)
++++.+
T Consensus 553 ~~~l~~ 558 (588)
T PRK13657 553 FDELVA 558 (588)
T ss_pred HHHHHH
Confidence 988764
No 282
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.4e-36 Score=351.05 Aligned_cols=218 Identities=26% Similarity=0.390 Sum_probs=171.7
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
..|+++||+|+|+. +++.+|+|+|+++++||.++|+||||||||||+|+|+|+.+| .+|+|.+||.+. +.
T Consensus 454 ~~i~~~~vsf~y~~------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p-~~G~I~idg~~i~~~~~ 526 (694)
T TIGR01846 454 GAITFENIRFRYAP------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP-QHGQVLVDGVDLAIADP 526 (694)
T ss_pred CeEEEEEEEEEcCC------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEehhhCCH
Confidence 36999999999842 335699999999999999999999999999999999999877 599999999864 45
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCcc--cccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRV--MFLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~--~~~de~~~~~s~ 177 (606)
..+|+.++||+|++.+++. |+.|.+.. +-. +.+-.+-.++ .+...+...|+= ...+|...++||
T Consensus 527 ~~~r~~i~~v~q~~~lf~~-ti~eNi~~-~~~--------~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSg 596 (694)
T TIGR01846 527 AWLRRQMGVVLQENVLFSR-SIRDNIAL-CNP--------GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSG 596 (694)
T ss_pred HHHHHhCeEEccCCeehhh-hHHHHHhc-CCC--------CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCH
Confidence 6788999999999998875 66544432 110 1122221111 111112222221 134566677888
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++. + +.||++++|++|++++.|
T Consensus 597 Gq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~ii~l~~G~i~~~g 673 (694)
T TIGR01846 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST-V-RACDRIIVLEKGQIAESG 673 (694)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH-H-HhCCEEEEEeCCEEEEeC
Confidence 88888889999999999999999999999999999999999885 58999999999863 4 679999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++.+
T Consensus 674 ~~~~l~~ 680 (694)
T TIGR01846 674 RHEELLA 680 (694)
T ss_pred CHHHHHH
Confidence 9998864
No 283
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-37 Score=341.80 Aligned_cols=218 Identities=16% Similarity=0.301 Sum_probs=171.4
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--- 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--- 103 (606)
..|+++|+++.+ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++...
T Consensus 264 ~~l~~~~l~~~~----------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~~g~~~~~~~~ 332 (510)
T PRK09700 264 TVFEVRNVTSRD----------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR-AGGEIRLNGKDISPRSP 332 (510)
T ss_pred cEEEEeCccccC----------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCCeEEECCEECCCCCH
Confidence 359999999752 2389999999999999999999999999999999999876 58999999976532
Q ss_pred -hhhcccEEEEccC---CCCCCCCcHHHHHHHcC-Cccc-cCCccccCChH-HHHHHHHHHHHhcCCcc--cccCCCCCC
Q psy13765 104 -NAFRRVSCYIQQD---DRLQPLLTIENVMSLLG-LDES-QNTRSSQLSGG-QKKRLSIALELINNPRV--MFLDEPTTS 174 (606)
Q Consensus 104 -~~~~~~~~yv~Q~---~~l~~~ltv~~~l~~~g-l~~~-~~~~~~~lSgG-qrqRv~ia~~L~~~~~~--~~~de~~~~ 174 (606)
...++.++||+|+ ..+++.+|+.+.+.... .... .....+..+.. ++++ +.+++..-++ -..+.+...
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~~ 409 (510)
T PRK09700 333 LDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRT---AENQRELLALKCHSVNQNITE 409 (510)
T ss_pred HHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHH---HHHHHHhcCCCCCCccCcccc
Confidence 2345679999998 46888899877654211 0000 00000001111 2223 3334433334 246899999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
|||||||||.||+||+.+|++|||||||+|||+.++..+.++|++++++|.|||++|||+. .+.++||++++|++|+++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEGRLT 488 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999888999999999976 577899999999999999
Q ss_pred EEcCh
Q psy13765 255 YQGAT 259 (606)
Q Consensus 255 ~~G~~ 259 (606)
..++.
T Consensus 489 ~~~~~ 493 (510)
T PRK09700 489 QILTN 493 (510)
T ss_pred EEecC
Confidence 88865
No 284
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-36 Score=329.23 Aligned_cols=218 Identities=23% Similarity=0.346 Sum_probs=181.9
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--- 102 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--- 102 (606)
...++++|++++| +..++|+||||++++||++||+|.||||||||+|+|+|.++| .+|+|.+||++..
T Consensus 6 ~~ll~~~~i~K~F--------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p-~~G~I~~~G~~~~~~s 76 (500)
T COG1129 6 PPLLELRGISKSF--------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP-DSGEILIDGKPVAFSS 76 (500)
T ss_pred cceeeeecceEEc--------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC-CCceEEECCEEccCCC
Confidence 3468999999997 457899999999999999999999999999999999999887 5999999998753
Q ss_pred h-hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhh
Q psy13765 103 I-NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQK 180 (606)
Q Consensus 103 ~-~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~ 180 (606)
+ ......|+.|+|+..+.|++||.+.+. +|-+.... .+-+- .|+--..|++++..-.+ .-.|.++++||.|||
T Consensus 77 p~~A~~~GI~~V~QEl~L~p~LsVaeNif-Lgre~~~~--~g~id--~~~m~~~A~~~l~~lg~~~~~~~~v~~Lsiaqr 151 (500)
T COG1129 77 PRDALAAGIATVHQELSLVPNLSVAENIF-LGREPTRR--FGLID--RKAMRRRARELLARLGLDIDPDTLVGDLSIAQR 151 (500)
T ss_pred HHHHHhCCcEEEeechhccCCccHHHHhh-cccccccC--CCccC--HHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHH
Confidence 2 334567999999999999999976654 34332211 11111 12333445555554322 238899999999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
|.|+||+||..+++||+||||||.|+...+..+.+++++|+++|.+||++||.++ +++++|||+.+|+||+.+..++
T Consensus 152 Q~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 152 QMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999999999999999999999999986 6999999999999999998887
No 285
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.4e-37 Score=340.70 Aligned_cols=223 Identities=20% Similarity=0.327 Sum_probs=175.4
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--- 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--- 103 (606)
..|+++|+++.+.. .+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|+.+|+|.++|++...
T Consensus 256 ~~l~~~~l~~~~~~-----~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 256 VILEARNLTCWDVI-----NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP 330 (500)
T ss_pred ceEEEeCCcccccc-----cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCH
Confidence 36999999987521 1235699999999999999999999999999999999999874358999999976531
Q ss_pred -hhhcccEEEEccCC---CCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc--ccCCCCCCCC
Q psy13765 104 -NAFRRVSCYIQQDD---RLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM--FLDEPTTSNP 176 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~---~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~--~~de~~~~~s 176 (606)
...++.++||+|+. .+++.+|+.+.+.......... ...+... +++++. +++..-++- ..|.+...||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~~LS 405 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCF--KMRIDAAAELQIIG---SAIQRLKVKTASPFLPIGRLS 405 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhcc--CCcCCHHHHHHHHH---HHHHhcCccCCCccCccccCC
Confidence 23467799999996 5888899877654321111100 0112222 233333 333333332 4688999999
Q ss_pred chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256 (606)
Q Consensus 177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~ 256 (606)
||||||+.||+||+.+|++|+|||||+|||+.++..+.++|++++++|.|||++|||++ .+.++||++++|++|+++..
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999987 57789999999999999987
Q ss_pred cChh
Q psy13765 257 GATD 260 (606)
Q Consensus 257 G~~~ 260 (606)
++.+
T Consensus 485 ~~~~ 488 (500)
T TIGR02633 485 FVNH 488 (500)
T ss_pred Eccc
Confidence 7654
No 286
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-36 Score=287.80 Aligned_cols=198 Identities=27% Similarity=0.468 Sum_probs=158.2
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR 107 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~ 107 (606)
.+..++++.+|+. ..+.+|+|+|++|.+||.++++||||||||||||+++|+.+| ..|+|.+||++++...
T Consensus 3 ~l~~~~~sl~y~g------~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P-~~G~i~l~~r~i~gPg-- 73 (259)
T COG4525 3 MLNVSHLSLSYEG------KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-SRGSIQLNGRRIEGPG-- 73 (259)
T ss_pred eeehhheEEecCC------cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc-ccceEEECCEeccCCC--
Confidence 4567788888642 335699999999999999999999999999999999999887 5999999999875432
Q ss_pred ccEEEEccCCCCCCCCcHH----------------------HHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc
Q psy13765 108 RVSCYIQQDDRLQPLLTIE----------------------NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV 165 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~----------------------~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~ 165 (606)
..-|.|+|++.++|.+++. +++..+||++..++.+-+||||||||+.
T Consensus 74 aergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvG----------- 142 (259)
T COG4525 74 AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVG----------- 142 (259)
T ss_pred ccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHH-----------
Confidence 2348899999999999972 2333445555555555555555555555
Q ss_pred cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcce
Q psy13765 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQ 244 (606)
Q Consensus 166 ~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~ 244 (606)
|||||+.+|++|+||||++.||.-+++++.++|-++.+ .|+.++++||+.++.+ -+++|
T Consensus 143 -------------------iARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAl-flatr 202 (259)
T COG4525 143 -------------------IARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEAL-FLATR 202 (259)
T ss_pred -------------------HHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHH-hhhhe
Confidence 55556666999999999999999999999999999876 5999999999988655 68999
Q ss_pred eeeec--CCcEEEEcChhHHHHH
Q psy13765 245 VYLLS--GGQCLYQGATDQLVNY 265 (606)
Q Consensus 245 v~~L~--~G~~~~~G~~~~~~~~ 265 (606)
+++|+ .||++..-+++-...|
T Consensus 203 Lvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 203 LVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred eEEecCCCceeeEecCCCHHHHh
Confidence 99998 5899998888754444
No 287
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.7e-36 Score=303.02 Aligned_cols=208 Identities=25% Similarity=0.349 Sum_probs=160.1
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEEC--Cc--cC---
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN--GH--SR--- 101 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~--G~--~~--- 101 (606)
|+++||++.|+...+ ...++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++ |. +.
T Consensus 2 l~~~~l~~~~~~~~~-~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ-GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP-DSGRILVRHEGAWVDLAQA 79 (224)
T ss_pred EEEEeeEEEeecccC-CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEEecCCCccchhhc
Confidence 789999999843100 00124699999999999999999999999999999999999876 58999998 42 22
Q ss_pred Chh---hh-cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHHHHHHHHHhcCCcc--cccCCCCCC
Q psy13765 102 NIN---AF-RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNPRV--MFLDEPTTS 174 (606)
Q Consensus 102 ~~~---~~-~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~~~~--~~~de~~~~ 174 (606)
+.. .. ++.++|++|++.+++.+|+.+.+... +.. . +... ..++++. +++..-++ .+.|.+...
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~-~~~--~----~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~~ 149 (224)
T TIGR02324 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEP-LLE--R----GVPREAARARAR---ELLARLNIPERLWHLPPAT 149 (224)
T ss_pred CHHHHHHHHhcceEEEecccccCCCccHHHHHHHH-HHH--c----CCCHHHHHHHHH---HHHHHcCCchhhhhCCccc
Confidence 111 12 35699999999999999998776531 110 0 0111 1233333 23332222 135778999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
+|+|||||+.||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||+++.+.
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 9999999999999999999999999999999999999999999999878999999999965 4667999998763
No 288
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.4e-36 Score=341.55 Aligned_cols=217 Identities=24% Similarity=0.362 Sum_probs=172.3
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~ 104 (606)
.|+++|++++|+. +++.+|+|+|+++++||.++|+||||||||||+++|+|+.+| .+|+|.+||.+. +..
T Consensus 313 ~I~~~~v~~~y~~------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~i~~~g~~~~~~~~~ 385 (569)
T PRK10789 313 ELDVNIRQFTYPQ------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV-SEGDIRFHDIPLTKLQLD 385 (569)
T ss_pred cEEEEEEEEECCC------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCEEEECCEEHhhCCHH
Confidence 5899999999742 235799999999999999999999999999999999999877 599999999864 345
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCcc--cccCCCCCCCCch
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRV--MFLDEPTTSNPND 178 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~--~~~de~~~~~s~g 178 (606)
.+++.++||+|++.+++. |+.+.+.. +..+ .+-.+-+.+ .+...+..-|+= -..+|....+|||
T Consensus 386 ~~~~~i~~v~q~~~lf~~-ti~~Ni~~-~~~~--------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgG 455 (569)
T PRK10789 386 SWRSRLAVVSQTPFLFSD-TVANNIAL-GRPD--------ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGG 455 (569)
T ss_pred HHHhheEEEccCCeeccc-cHHHHHhc-CCCC--------CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHH
Confidence 778899999999999875 77665532 2111 121221111 111111122221 1345667789999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
||||++|||||+++|++++|||||+|||+.++..+.+.|+++. +|+|+|+++|+++. .+.+|++++|++|+++..|+
T Consensus 456 q~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~i~~l~~G~i~~~g~ 532 (569)
T PRK10789 456 QKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASEILVMQHGHIAQRGN 532 (569)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999885 58999999999863 47799999999999999999
Q ss_pred hhHHHH
Q psy13765 259 TDQLVN 264 (606)
Q Consensus 259 ~~~~~~ 264 (606)
++++.+
T Consensus 533 ~~~l~~ 538 (569)
T PRK10789 533 HDQLAQ 538 (569)
T ss_pred HHHHHH
Confidence 988764
No 289
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.2e-36 Score=341.11 Aligned_cols=223 Identities=22% Similarity=0.377 Sum_probs=169.2
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
..|+++||+++|+.+ .++.+|+|+|++++|||.++|+||||||||||+|+|+|++++ .+|+|.+||.+. +.
T Consensus 336 ~~i~~~~v~f~y~~~-----~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p-~~G~I~i~g~~i~~~~~ 409 (576)
T TIGR02204 336 GEIEFEQVNFAYPAR-----PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP-QSGRILLDGVDLRQLDP 409 (576)
T ss_pred ceEEEEEEEEECCCC-----CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCEEEECCEEHHhcCH
Confidence 369999999998531 236799999999999999999999999999999999999887 599999999764 34
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCc-c-cccCCCCCCCCchhhh
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR-V-MFLDEPTTSNPNDQKK 181 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~-~-~~~de~~~~~s~g~~k 181 (606)
..+++.++|+||++.+++. |+.+.+.. +-.+..+..+.+ -.+++.+...+-.-|+ + ....|....+||||||
T Consensus 410 ~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~-~~~~~~~~~~~~----~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 410 AELRARMALVPQDPVLFAA-SVMENIRY-GRPDATDEEVEA----AARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HHHHHhceEEccCCccccc-cHHHHHhc-CCCCCCHHHHHH----HHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 6778899999999998875 55443322 111110100000 0111111111111111 1 1234556678888888
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~ 261 (606)
|++||||++++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|+++.|++|+++..|++++
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~ 560 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAE 560 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHH
Confidence 8889999999999999999999999999999999999985 4899999999985 357899999999999999999988
Q ss_pred HHH
Q psy13765 262 LVN 264 (606)
Q Consensus 262 ~~~ 264 (606)
+.+
T Consensus 561 l~~ 563 (576)
T TIGR02204 561 LIA 563 (576)
T ss_pred HHH
Confidence 753
No 290
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=4.1e-36 Score=340.51 Aligned_cols=216 Identities=22% Similarity=0.375 Sum_probs=173.7
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~ 104 (606)
.++++|++++|+. ++++|+|+|+++++||.++|+||||||||||+++|+|+.++ .+|+|.+||.+. +..
T Consensus 334 ~i~~~~v~~~y~~-------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~ 405 (585)
T TIGR01192 334 AVEFRHITFEFAN-------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP-TVGQILIDGIDINTVTRE 405 (585)
T ss_pred eEEEEEEEEECCC-------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC-CCCEEEECCEEhhhCCHH
Confidence 6999999999742 24689999999999999999999999999999999999877 599999999864 345
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCccc--ccCCCCCCCCch
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRVM--FLDEPTTSNPND 178 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~~--~~de~~~~~s~g 178 (606)
.+++.++||+|++.+++ .|+.+.+.. +..+ .|.-|.... .+...+...|+-+ ..+|....+|||
T Consensus 406 ~~~~~i~~v~q~~~lf~-~ti~~Ni~~-~~~~--------~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgG 475 (585)
T TIGR01192 406 SLRKSIATVFQDAGLFN-RSIRENIRL-GREG--------ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475 (585)
T ss_pred HHHhheEEEccCCccCc-ccHHHHHhc-CCCC--------CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHH
Confidence 67889999999999887 477665533 2111 122222211 1111122333321 456778889999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
||||+.|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|+|+++|+++. + +.||++++|++|+++..|+
T Consensus 476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~-~-~~~d~i~~l~~G~i~~~g~ 552 (585)
T TIGR01192 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST-V-RNADLVLFLDQGRLIEKGS 552 (585)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH-H-HcCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999885 48999999999863 4 6799999999999999999
Q ss_pred hhHHHH
Q psy13765 259 TDQLVN 264 (606)
Q Consensus 259 ~~~~~~ 264 (606)
.+++.+
T Consensus 553 ~~~l~~ 558 (585)
T TIGR01192 553 FQELIQ 558 (585)
T ss_pred HHHHHH
Confidence 988764
No 291
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-37 Score=303.33 Aligned_cols=181 Identities=27% Similarity=0.492 Sum_probs=163.0
Q ss_pred ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC-------ChhhhcccEEEEccCCCCCCCCc
Q psy13765 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR-------NINAFRRVSCYIQQDDRLQPLLT 124 (606)
Q Consensus 52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~-------~~~~~~~~~~yv~Q~~~l~~~lt 124 (606)
-=++++..+.-.++||-|+||||||||+|+|+|+..| .+|.|.+||+.. .....+|++||||||..+||.+|
T Consensus 14 ~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rP-deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRP-DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCc-cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 3467777777579999999999999999999999887 599999999742 12345789999999999999999
Q ss_pred H----------------HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHh
Q psy13765 125 I----------------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE 188 (606)
Q Consensus 125 v----------------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~a 188 (606)
| +++...+|++|..++++..|||||||||+|+|||++.
T Consensus 93 VrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~-------------------------- 146 (352)
T COG4148 93 VRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTA-------------------------- 146 (352)
T ss_pred EecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcC--------------------------
Confidence 7 6788899999999999999999999999988877777
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 189 L~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
|++|++|||.+.||-....+++-.|++|+++ +.-|+.+||.+. ++.+++|+|++|++|++...|+.+++.+
T Consensus 147 ----P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 147 ----PELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred ----CCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999999999999999987 889999999976 6889999999999999999999998864
No 292
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3e-36 Score=319.00 Aligned_cols=216 Identities=26% Similarity=0.437 Sum_probs=172.3
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCC
Q psy13765 11 SLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGV 90 (606)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~ 90 (606)
..++....-.+|.. .-.+.++++++. |. ..++++|+|+||++++||.++|+||||||||||.|+|.|..+| .
T Consensus 318 ~~p~~~~~m~LP~P-~g~L~Ve~l~~~-PP-----g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p-~ 389 (580)
T COG4618 318 ELPAAAERMPLPAP-QGALSVERLTAA-PP-----GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP-T 389 (580)
T ss_pred hCccccCCCCCCCC-CceeeEeeeeec-CC-----CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc-C
Confidence 33334444445543 457999999984 32 3567999999999999999999999999999999999999887 6
Q ss_pred ccEEEECCcc---CChhhhcccEEEEccCCCCCCCCcHHHHHHHcC-----------------------CccccCCccc-
Q psy13765 91 TGQILTNGHS---RNINAFRRVSCYIQQDDRLQPLLTIENVMSLLG-----------------------LDESQNTRSS- 143 (606)
Q Consensus 91 ~G~I~~~G~~---~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~g-----------------------l~~~~~~~~~- 143 (606)
+|.|.+||.+ .+.+++-+++||+||+-.+|+. |+.|.+..++ +..-.|+.++
T Consensus 390 ~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~ 468 (580)
T COG4618 390 SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGE 468 (580)
T ss_pred CCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCC
Confidence 9999999975 4567888999999999999987 4433222222 2222233332
Q ss_pred ---cCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy13765 144 ---QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMI 220 (606)
Q Consensus 144 ---~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l 220 (606)
.||||||||+++||||..+ |.+++||||-|+||......+.+.|.++
T Consensus 469 ~G~~LSgGQRQRIaLARAlYG~------------------------------P~lvVLDEPNsNLD~~GE~AL~~Ai~~~ 518 (580)
T COG4618 469 GGATLSGGQRQRIALARALYGD------------------------------PFLVVLDEPNSNLDSEGEAALAAAILAA 518 (580)
T ss_pred CCCCCCchHHHHHHHHHHHcCC------------------------------CcEEEecCCCCCcchhHHHHHHHHHHHH
Confidence 3666666666655555555 9999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHHHH
Q psy13765 221 SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLS 267 (606)
Q Consensus 221 ~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~ 267 (606)
+++|.|+|+++|.|+ +...+|+|++|++|++..+|+.+|++....
T Consensus 519 k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 519 KARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred HHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 999999999999987 468999999999999999999999988653
No 293
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=7.4e-36 Score=285.36 Aligned_cols=163 Identities=33% Similarity=0.493 Sum_probs=137.7
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~ 108 (606)
|+++|++++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|. +
T Consensus 1 i~~~~~~~~~~-------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~--------~ 64 (166)
T cd03223 1 IELENLSLATP-------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEG--------E 64 (166)
T ss_pred CEEEEEEEEcC-------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCC--------c
Confidence 46899999873 125699999999999999999999999999999999999876 5999999873 5
Q ss_pred cEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHh
Q psy13765 109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE 188 (606)
Q Consensus 109 ~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~a 188 (606)
.++|++|++.++ ..|+.+.+... .+.+||||||||+++|++|+.+
T Consensus 65 ~i~~~~q~~~~~-~~tv~~nl~~~--------~~~~LS~G~~~rv~laral~~~-------------------------- 109 (166)
T cd03223 65 DLLFLPQRPYLP-LGTLREQLIYP--------WDDVLSGGEQQRLAFARLLLHK-------------------------- 109 (166)
T ss_pred eEEEECCCCccc-cccHHHHhhcc--------CCCCCCHHHHHHHHHHHHHHcC--------------------------
Confidence 799999998765 46887665431 3567888888888866666665
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765 189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGG 251 (606)
Q Consensus 189 L~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 251 (606)
|++++|||||+|||+.++..+.+.++++ ++|+|++||++. . .+.||++++|++|
T Consensus 110 ----p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~-~-~~~~d~i~~l~~~ 163 (166)
T cd03223 110 ----PKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS-L-WKFHDRVLDLDGE 163 (166)
T ss_pred ----CCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh-H-HhhCCEEEEEcCC
Confidence 9999999999999999999999999876 689999999975 3 4799999999864
No 294
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.5e-36 Score=293.44 Aligned_cols=177 Identities=28% Similarity=0.429 Sum_probs=137.9
Q ss_pred ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----hhhhcccEEEEccCCC--CC
Q psy13765 48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-----INAFRRVSCYIQQDDR--LQ 120 (606)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-----~~~~~~~~~yv~Q~~~--l~ 120 (606)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.. ...+++.++|++|++. ++
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP-QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 45799999999999999999999999999999999999876 5999999998653 1244677999999973 44
Q ss_pred CCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEe
Q psy13765 121 PLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD 199 (606)
Q Consensus 121 ~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLD 199 (606)
..|+.+.+...... ...+..+ ++++.-+.+.+.-. -..|.+...+|+|||||+.||+||+.+|++++||
T Consensus 83 -~~tv~~nl~~~~~~-------~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 83 -AADVDQDVAFGPLN-------LGLSEAEVERRVREALTAVGAS--GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred -cccHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHcCch--hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 46876655431100 0112111 23332222222211 1468888899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 200 EPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
|||+|||+.++..+.+.|++++++|+|||+++|++.
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999999999999999999888999999999975
No 295
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-35 Score=324.59 Aligned_cols=211 Identities=25% Similarity=0.375 Sum_probs=164.8
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR 107 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~ 107 (606)
.++++||++.+..+ ..+.+|+|+||++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~-----~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P-~sGeI~I~G~~~------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDG-----EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP-NKGTVDIKGSAA------ 88 (549)
T ss_pred eeEEEEEEEecCCC-----ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CceEEEECCEee------
Confidence 57888888776321 225699999999999999999999999999999999999876 599999999641
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~I 185 (606)
++.+...+.+.+|+.+.+....... +++..+ ++++. +++...++- .+|.+...+|||||||+.|
T Consensus 89 ----~i~~~~~l~~~lTV~EnL~l~~~~~-------~~~~~e~~e~i~---elLe~lgL~~~ld~~~~~LSGGQrQRVaL 154 (549)
T PRK13545 89 ----LIAISSGLNGQLTGIENIELKGLMM-------GLTKEKIKEIIP---EIIEFADIGKFIYQPVKTYSSGMKSRLGF 154 (549)
T ss_pred ----eEEeccccCCCCcHHHHHHhhhhhc-------CCCHHHHHHHHH---HHHHHcCChhHhhCCcccCCHHHHHHHHH
Confidence 1223345566778877654322100 122222 22222 222222232 4678889999999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHH
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNY 265 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~ 265 (606)
|+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.++||++++|++|++++.|+++++..-
T Consensus 155 ArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 155 AISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 99999999999999999999999999999999999878999999999976 57789999999999999999999887653
No 296
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.5e-36 Score=335.33 Aligned_cols=217 Identities=20% Similarity=0.342 Sum_probs=172.6
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--- 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--- 103 (606)
..++++|+++ .+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++...
T Consensus 256 ~~l~~~~l~~-------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p-~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 256 VRLKVDNLSG-------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR-TSGYVTLDGHEVVTRSP 321 (501)
T ss_pred cEEEEeCccc-------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCCCCH
Confidence 3588888873 269999999999999999999999999999999999876 58999999976531
Q ss_pred -hhhcccEEEEccCC---CCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcc--cccCCCCCCCC
Q psy13765 104 -NAFRRVSCYIQQDD---RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRV--MFLDEPTTSNP 176 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~---~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~--~~~de~~~~~s 176 (606)
...++.+|||+|++ .+++.+|+.+.+..-..... ....+.++..+ +++ +.+++..-.+ -..|.+...||
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~~LS 397 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYF-SRAGGSLKHADEQQA---VSDFIRLFNIKTPSMEQAIGLLS 397 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhh-cccccccCHHHHHHH---HHHHHHhcCCCCCCccCchhhCC
Confidence 23456799999996 57888999776643111100 00001122222 223 3334443333 14789999999
Q ss_pred chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256 (606)
Q Consensus 177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~ 256 (606)
|||||||.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++|||+. .+.++||++++|++|+++..
T Consensus 398 gGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~ 476 (501)
T PRK10762 398 GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISGE 476 (501)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999986 57799999999999999999
Q ss_pred cChhHH
Q psy13765 257 GATDQL 262 (606)
Q Consensus 257 G~~~~~ 262 (606)
|+++++
T Consensus 477 ~~~~~~ 482 (501)
T PRK10762 477 FTREQA 482 (501)
T ss_pred eccccC
Confidence 987764
No 297
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=5.3e-36 Score=299.73 Aligned_cols=198 Identities=24% Similarity=0.355 Sum_probs=156.0
Q ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCC--CCcHHHHHHHcCC
Q psy13765 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQP--LLTIENVMSLLGL 134 (606)
Q Consensus 57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~--~ltv~~~l~~~gl 134 (606)
+++++||+++|+||||||||||+++|+|+.++ .+|+|.+||++.. ..++.++|++|++.+++ .+|+.+.+.. +.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~-~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPP-AKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMS-GR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHh-cc
Confidence 46899999999999999999999999999876 5999999998653 34677999999987643 3678766543 21
Q ss_pred ccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHH
Q psy13765 135 DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI 214 (606)
Q Consensus 135 ~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~ 214 (606)
...... ...-...+++++.-+.+.+.-.+ ..|.+...+|+|||||+.||+||+.+|+++++||||+|||+.++..+.
T Consensus 77 ~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~ 153 (223)
T TIGR03771 77 TGHIGW-LRRPCVADFAAVRDALRRVGLTE--LADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLT 153 (223)
T ss_pred cccccc-ccCCcHHHHHHHHHHHHHhCCch--hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 110000 00111223444443344433221 457788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 215 KLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 215 ~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
+.|++++++|+|+|+++|+++ .+.+.||+++++ +|++++.|+++++.
T Consensus 154 ~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 154 ELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 999999878999999999976 577899999999 89999999988764
No 298
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-36 Score=334.38 Aligned_cols=217 Identities=16% Similarity=0.313 Sum_probs=172.2
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--- 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--- 103 (606)
..++++|+++ +.+++|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++...
T Consensus 256 ~~l~~~~~~~------------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p-~~G~i~~~g~~~~~~~~ 322 (501)
T PRK11288 256 VRLRLDGLKG------------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR-TAGQVYLDGKPIDIRSP 322 (501)
T ss_pred cEEEEecccc------------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC-CCceEEECCEECCCCCH
Confidence 3588888873 2489999999999999999999999999999999999876 58999999976431
Q ss_pred -hhhcccEEEEccCC---CCCCCCcHHHHHHHcCCccccCCccc-cCChH-HHHHHHHHHHHhcCCcc--cccCCCCCCC
Q psy13765 104 -NAFRRVSCYIQQDD---RLQPLLTIENVMSLLGLDESQNTRSS-QLSGG-QKKRLSIALELINNPRV--MFLDEPTTSN 175 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~---~l~~~ltv~~~l~~~gl~~~~~~~~~-~lSgG-qrqRv~ia~~L~~~~~~--~~~de~~~~~ 175 (606)
...++.++|++|++ .+++.+|+.+.+.. +..... ...+ -.+.. ++++ +.+++..-++ -..|.+...|
T Consensus 323 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~-~~~~~~-~~~~~~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~~L 397 (501)
T PRK11288 323 RDAIRAGIMLCPEDRKAEGIIPVHSVADNINI-SARRHH-LRAGCLINNRWEAEN---ADRFIRSLNIKTPSREQLIMNL 397 (501)
T ss_pred HHHHhCCCEEcCcCHhhCCCcCCCCHHHHhcc-ccchhh-cccccccChHHHHHH---HHHHHHhcCcccCCccCccccC
Confidence 23456799999996 48888998776542 211100 0000 01111 1222 3344444344 2578999999
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
||||||||.||+||+.+|++|||||||+|||+.++.+++++|++++++|.|||++|||+. .+.++||++++|++|++++
T Consensus 398 SgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~ 476 (501)
T PRK11288 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAG 476 (501)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999988999999999976 5779999999999999999
Q ss_pred EcChhHH
Q psy13765 256 QGATDQL 262 (606)
Q Consensus 256 ~G~~~~~ 262 (606)
.|+++++
T Consensus 477 ~~~~~~~ 483 (501)
T PRK11288 477 ELAREQA 483 (501)
T ss_pred EEccccC
Confidence 9987653
No 299
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=3.5e-35 Score=336.05 Aligned_cols=218 Identities=25% Similarity=0.381 Sum_probs=174.8
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~ 104 (606)
.++++|++++|+.+ .+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.+||++... +
T Consensus 4 ~l~~~nl~~~y~~~----~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~i~~~~~~ 78 (648)
T PRK10535 4 LLELKDIRRSYPSG----EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP-TSGTYRVAGQDVATLDAD 78 (648)
T ss_pred EEEEeeEEEEeCCC----CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEcCcCCHH
Confidence 58999999998421 1235699999999999999999999999999999999999876 59999999986532 2
Q ss_pred hh----cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCch
Q psy13765 105 AF----RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPND 178 (606)
Q Consensus 105 ~~----~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g 178 (606)
++ ++.++|++|++.+++.+|+.+.+.... . .. ..+..+ ++++ .+++..-++- ..|.+...+|+|
T Consensus 79 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~-~---~~---~~~~~~~~~~~---~~~l~~lgl~~~~~~~~~~LS~G 148 (648)
T PRK10535 79 ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPA-V---YA---GLERKQRLLRA---QELLQRLGLEDRVEYQPSQLSGG 148 (648)
T ss_pred HHHHHHhccEEEEeCCcccCCCCCHHHHHHHHH-H---Hc---CCCHHHHHHHH---HHHHHHCCChhhhcCCcccCCHH
Confidence 22 467999999999999999766554311 0 00 112222 2333 2333222221 468888999999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
|+||+.|||||+.+|++|+|||||+|||+.++..+.++|++++++|+|+|+++|+++ .+ +.|||+++|++|++++.|+
T Consensus 149 q~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~~-~~~d~i~~l~~G~i~~~g~ 226 (648)
T PRK10535 149 QQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VA-AQAERVIEIRDGEIVRNPP 226 (648)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HH-HhCCEEEEEECCEEEeecC
Confidence 999999999999999999999999999999999999999999878999999999976 34 6799999999999999999
Q ss_pred hhHH
Q psy13765 259 TDQL 262 (606)
Q Consensus 259 ~~~~ 262 (606)
+++.
T Consensus 227 ~~~~ 230 (648)
T PRK10535 227 AQEK 230 (648)
T ss_pred cccc
Confidence 8754
No 300
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.1e-35 Score=334.86 Aligned_cols=194 Identities=22% Similarity=0.301 Sum_probs=152.6
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~ 103 (606)
..++++|++|+|+. ++++|+|+|+++++||.++|+||||||||||+++|+|+++| .+|+|.+||.+.+ .
T Consensus 321 ~~i~~~~v~f~y~~-------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~ 392 (547)
T PRK10522 321 QTLELRNVTFAYQD-------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP-QSGEILLDGKPVTAEQP 392 (547)
T ss_pred ceEEEEEEEEEeCC-------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEECCCCCH
Confidence 36999999999852 24699999999999999999999999999999999999877 5999999998753 4
Q ss_pred hhhcccEEEEccCCCCCCCCcH-----------HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCC-
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTI-----------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP- 171 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv-----------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~- 171 (606)
..+++.++||+|++.+++.... ++.++.+++.+..+ ..+..
T Consensus 393 ~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~---------------------------~~~~~~ 445 (547)
T PRK10522 393 EDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLE---------------------------LEDGRI 445 (547)
T ss_pred HHHhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhh---------------------------ccccCC
Confidence 5678899999999988765321 12222333322111 01110
Q ss_pred -CCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeec
Q psy13765 172 -TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 172 -~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
...+|||||||++|||||+++|++|+||||||+||+.++..+.+.+.+..+ +|+|+|+++|+++ ..+.||++++|+
T Consensus 446 ~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~ 523 (547)
T PRK10522 446 SNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMR 523 (547)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEE
Confidence 235666666666677777777999999999999999999999999986654 5899999999975 357899999999
Q ss_pred CCcEEEEc
Q psy13765 250 GGQCLYQG 257 (606)
Q Consensus 250 ~G~~~~~G 257 (606)
+|++++..
T Consensus 524 ~G~i~e~~ 531 (547)
T PRK10522 524 NGQLSELT 531 (547)
T ss_pred CCEEEEec
Confidence 99998763
No 301
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.3e-35 Score=292.61 Aligned_cols=195 Identities=26% Similarity=0.417 Sum_probs=150.8
Q ss_pred EEEEeeEEEEecCCccccc--ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQE--PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~ 106 (606)
++++||++++..+ + .+.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|
T Consensus 1 l~~~~l~~~~~~~-----~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~-~~G~i~~~g-------- 66 (204)
T cd03250 1 ISVEDASFTWDSG-----EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK-LSGSVSVPG-------- 66 (204)
T ss_pred CEEeEEEEecCCC-----CccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC-CCCeEEEcC--------
Confidence 4689999987321 1 13699999999999999999999999999999999999876 599999998
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCc--ccccCCCCCCCCchhh
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPR--VMFLDEPTTSNPNDQK 180 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~--~~~~de~~~~~s~g~~ 180 (606)
.++|++|++.+++ .|+.+.+.. +.. .+.-..++. .+...+-..|. -...+++...+|+|||
T Consensus 67 --~i~~~~q~~~l~~-~t~~enl~~-~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~ 133 (204)
T cd03250 67 --SIAYVSQEPWIQN-GTIRENILF-GKP---------FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQK 133 (204)
T ss_pred --EEEEEecCchhcc-CcHHHHhcc-CCC---------cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHH
Confidence 5999999999885 577655533 111 011011111 11111211111 1135778889999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK-LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
||+.||+||+.+|++++|||||+|||+.++..+.+ ++++++++|+|||+++|++. .+.. +|++++|++|+
T Consensus 134 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 134 QRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 99999999999999999999999999999999998 56777666899999999986 4545 99999999885
No 302
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=5.6e-36 Score=334.26 Aligned_cols=214 Identities=19% Similarity=0.295 Sum_probs=169.4
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~ 104 (606)
.|+++|++. .+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++... .
T Consensus 268 ~l~~~~l~~-------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~i~~~~~~ 333 (510)
T PRK15439 268 VLTVEDLTG-------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA-RGGRIMLNGKEINALSTA 333 (510)
T ss_pred eEEEeCCCC-------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCcEEEECCEECCCCCHH
Confidence 588899872 159999999999999999999999999999999999876 58999999986532 1
Q ss_pred -hhcccEEEEccCC---CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCch
Q psy13765 105 -AFRRVSCYIQQDD---RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPND 178 (606)
Q Consensus 105 -~~~~~~~yv~Q~~---~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g 178 (606)
..++.++|++|++ .+++.+|+.+.+........ ... .. ...+++++ .+++..-.+ -..|.+...||||
T Consensus 334 ~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~-~~~-~~-~~~~~~~~---~~~l~~~~l~~~~~~~~~~~LSgG 407 (510)
T PRK15439 334 QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRR-GFW-IK-PARENAVL---ERYRRALNIKFNHAEQAARTLSGG 407 (510)
T ss_pred HHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhh-ccc-cC-hHHHHHHH---HHHHHHcCCCCCCccCccccCCcH
Confidence 2346799999984 47888888655432111000 000 00 11233333 333333333 2468999999999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
|||||.||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||+. .+.++||++++|++|+++..|+
T Consensus 408 ~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~ 486 (510)
T PRK15439 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALT 486 (510)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999999999888999999999987 5778999999999999999998
Q ss_pred hhHH
Q psy13765 259 TDQL 262 (606)
Q Consensus 259 ~~~~ 262 (606)
++++
T Consensus 487 ~~~~ 490 (510)
T PRK15439 487 GAAI 490 (510)
T ss_pred cccC
Confidence 7654
No 303
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.3e-35 Score=295.52 Aligned_cols=202 Identities=24% Similarity=0.344 Sum_probs=154.2
Q ss_pred EEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh------
Q psy13765 30 KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI------ 103 (606)
Q Consensus 30 ~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~------ 103 (606)
.+.|+++.++ +.+++++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSWG-------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT-LEGKVHWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEecC-------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCeEEECCccccccccccc
Confidence 4678888863 235799999999999999999999999999999999999876 59999999976421
Q ss_pred -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHH---hcC-Ccc--cccCCCCCCCC
Q psy13765 104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL---INN-PRV--MFLDEPTTSNP 176 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L---~~~-~~~--~~~de~~~~~s 176 (606)
...++.++|++|++.+++ .|+.+.+.... . .+.-+.+++.-+..+ +.. |.- -.++++...+|
T Consensus 74 ~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~--~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS 142 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLLN-ATVEENITFGS--P--------FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLS 142 (218)
T ss_pred chhhcceEEEEcCCCcccc-ccHHHHHhhcC--c--------CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCC
Confidence 123567999999998874 67766554321 0 111111222211111 110 100 12456788999
Q ss_pred chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK--LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~--~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
+|||||+.||+||+.+|++|+|||||+|||+.++..+++ +++.++++|.|+|+++|+++. + ..+|++++|++|+
T Consensus 143 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 143 GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 999999999999999999999999999999999999998 677776678999999999874 5 5799999999884
No 304
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=8.9e-36 Score=364.31 Aligned_cols=220 Identities=24% Similarity=0.371 Sum_probs=168.1
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC------------------
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG------------------ 89 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~------------------ 89 (606)
.|+++||+|+|+.+ .++++|+|+|++|++|+.+||+||||||||||+++|.|++.|.
T Consensus 1165 ~I~f~nVsF~Y~~~-----~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~ 1239 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR-----PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNE 1239 (1466)
T ss_pred eEEEEEEEEECCCC-----CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccc
Confidence 69999999998632 2357999999999999999999999999999999999998762
Q ss_pred -----------------------------------CccEEEECCccC---ChhhhcccEEEEccCCCCCCCCcHHHHHHH
Q psy13765 90 -----------------------------------VTGQILTNGHSR---NINAFRRVSCYIQQDDRLQPLLTIENVMSL 131 (606)
Q Consensus 90 -----------------------------------~~G~I~~~G~~~---~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~ 131 (606)
.+|+|++||.++ +.+.+|+.+|||+|++.+|+. |+.|.+..
T Consensus 1240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~ 1318 (1466)
T PTZ00265 1240 QDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKF 1318 (1466)
T ss_pred cccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhc
Confidence 489999999864 557889999999999999864 65444332
Q ss_pred cCCccccCCccccCChHHHHHHHH----HHHHhcCCccc--ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC
Q psy13765 132 LGLDESQNTRSSQLSGGQKKRLSI----ALELINNPRVM--FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205 (606)
Q Consensus 132 ~gl~~~~~~~~~~lSgGqrqRv~i----a~~L~~~~~~~--~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL 205 (606)
|..+ .|-.|-.+++- ..-+..-|+=+ ...|....||||||||++|||||+++|+||+||||||+|
T Consensus 1319 -g~~~--------at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaL 1389 (1466)
T PTZ00265 1319 -GKED--------ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSL 1389 (1466)
T ss_pred -CCCC--------CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 2111 12222222111 01111112211 223455567777777777777888889999999999999
Q ss_pred CHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhhcceeeeecC----CcEE-EEcChhHHHH
Q psy13765 206 DSQSCSQCIKLLKMIS-QQGRTIICTIHQPSATLFQMFDQVYLLSG----GQCL-YQGATDQLVN 264 (606)
Q Consensus 206 D~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~----G~~~-~~G~~~~~~~ 264 (606)
|+.+...|.+.|+++. .+++|+|+++|+++. .+.||+|++|++ |+++ +.|+++++++
T Consensus 1390 D~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1390 DSNSEKLIEKTIVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred CHHHHHHHHHHHHHHhccCCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 9999999999999986 368999999999863 478999999998 9955 8999999864
No 305
>KOG0055|consensus
Probab=100.00 E-value=6.9e-36 Score=345.54 Aligned_cols=199 Identities=31% Similarity=0.495 Sum_probs=165.5
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
-.|+++||+|+||.+ .+.++|+|+|+++++|+.+||+|||||||||.+.+|-+++.| ..|+|.+||.++ +.
T Consensus 986 G~I~~~~V~F~YPsR-----P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp-~~G~V~IDg~dik~lnl 1059 (1228)
T KOG0055|consen 986 GDIEFRNVSFAYPTR-----PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP-DAGKVKIDGVDIKDLNL 1059 (1228)
T ss_pred eEEEEeeeEeeCCCC-----CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC-CCCeEEECCcccccCCH
Confidence 479999999999854 467899999999999999999999999999999999999887 599999999864 56
Q ss_pred hhhcccEEEEccCCCCCCCCcHH------------HHHHHc--------------CCccccCCccccCChHHHHHHHHHH
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIE------------NVMSLL--------------GLDESQNTRSSQLSGGQKKRLSIAL 157 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~------------~~l~~~--------------gl~~~~~~~~~~lSgGqrqRv~ia~ 157 (606)
+.+|+++|.|.|+|.||...--| |+.+.+ |++...+.+..+||||||||++|||
T Consensus 1060 ~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIAR 1139 (1228)
T KOG0055|consen 1060 KWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIAR 1139 (1228)
T ss_pred HHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHH
Confidence 78899999999999998753333 333322 2333333344456777776666555
Q ss_pred HHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q psy13765 158 ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT 237 (606)
Q Consensus 158 ~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~ 237 (606)
|+++| |+||+|||.||+||+++.+.+-+.|.+.. +|+|.|++.|+++.
T Consensus 1140 AilRn------------------------------PkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST- 1187 (1228)
T KOG0055|consen 1140 AILRN------------------------------PKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST- 1187 (1228)
T ss_pred HHHcC------------------------------CCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh-
Confidence 55555 99999999999999999999999999875 48999999999874
Q ss_pred HHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 238 LFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 238 i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
.+.||.|.++++|++++.|+++++++
T Consensus 1188 -IqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1188 -IQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred -hhcCCEEEEEECCEEEecccHHHHHh
Confidence 48999999999999999999999986
No 306
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=291.47 Aligned_cols=220 Identities=24% Similarity=0.395 Sum_probs=163.7
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--- 102 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--- 102 (606)
..-|+++|+++.+ ++|++|+|+|++|++||-.+|+|||||||||||++++|..++. +|.+.+.|+...
T Consensus 29 ~~li~l~~v~v~r--------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps-sg~~~~~G~~~G~~~ 99 (257)
T COG1119 29 EPLIELKNVSVRR--------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS-SGDVTLLGRRFGKGE 99 (257)
T ss_pred cceEEecceEEEE--------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC-CCceeeeeeeccCCc
Confidence 3569999999986 5689999999999999999999999999999999999998875 999999998642
Q ss_pred h-hhhcccEEEEccC--CCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchh
Q psy13765 103 I-NAFRRVSCYIQQD--DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQ 179 (606)
Q Consensus 103 ~-~~~~~~~~yv~Q~--~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~ 179 (606)
. .++|+.||+|.-. ..+.+..++.+++-- |........-..++.-++.++.-..+++.-.+ +.|.|...||.||
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlS-g~~~siG~y~~~~~~~~~~~a~~lle~~g~~~--la~r~~~~LS~Ge 176 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLS-GFFASIGIYQEDLTAEDLAAAQWLLELLGAKH--LADRPFGSLSQGE 176 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeee-cccccccccccCCCHHHHHHHHHHHHHcchhh--hccCchhhcCHhH
Confidence 2 6789999999742 233333444333211 11110000001233333333332222222211 5566777777777
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ--GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~--g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||+-|||||+++|++|||||||+|||...++.+.+.|.+++.. +.++|++||+++ ++-..+++++++++|+++++|
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCceeecc
Confidence 77777777888889999999999999999999999999999875 789999999977 578999999999999999987
Q ss_pred C
Q psy13765 258 A 258 (606)
Q Consensus 258 ~ 258 (606)
.
T Consensus 256 ~ 256 (257)
T COG1119 256 K 256 (257)
T ss_pred c
Confidence 4
No 307
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.7e-35 Score=301.31 Aligned_cols=208 Identities=22% Similarity=0.308 Sum_probs=159.0
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA 105 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~ 105 (606)
...|+++|+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|
T Consensus 37 ~~~l~i~nls~~----------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p-~~G~I~i~g------- 98 (282)
T cd03291 37 DNNLFFSNLCLV----------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP-SEGKIKHSG------- 98 (282)
T ss_pred CCeEEEEEEEEe----------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECC-------
Confidence 456899999984 14699999999999999999999999999999999999876 599999988
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCCCchhhhHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~s~g~~krl 183 (606)
.++|++|++.+++. |+.+.+.. +... .. ... ....+++.+...+-..|+.. .++++...+|+|||||+
T Consensus 99 ---~i~yv~q~~~l~~~-tv~enl~~-~~~~--~~--~~~-~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv 168 (282)
T cd03291 99 ---RISFSSQFSWIMPG-TIKENIIF-GVSY--DE--YRY-KSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARI 168 (282)
T ss_pred ---EEEEEeCccccccc-CHHHHhhc-cccc--CH--HHH-HHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHH
Confidence 38999999988875 77665442 1100 00 000 00001111111111111111 34566789999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL-KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l-~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
.||+||+.+|++++|||||+|||+.++..+.+.+ ++++ ++.|||+++|++.. + ..||++++|++|++++.|+++++
T Consensus 169 ~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~ 245 (282)
T cd03291 169 SLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFYGTFSEL 245 (282)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999864 5554 47999999999874 4 68999999999999999999887
Q ss_pred HH
Q psy13765 263 VN 264 (606)
Q Consensus 263 ~~ 264 (606)
..
T Consensus 246 ~~ 247 (282)
T cd03291 246 QS 247 (282)
T ss_pred Hh
Confidence 53
No 308
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.5e-35 Score=329.38 Aligned_cols=218 Identities=20% Similarity=0.300 Sum_probs=167.3
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---- 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---- 102 (606)
..|+++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++..+|+|.++|++..
T Consensus 259 ~~l~~~~l~~~~~--------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 259 PRIVLNNGVVSYN--------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred ceEEEeceEEEEC--------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCC
Confidence 4699999999872 3569999999999999999999999999999999999865324899999997542
Q ss_pred hhhhcccEEEEccCCCCCC--CCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCCCch
Q psy13765 103 INAFRRVSCYIQQDDRLQP--LLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPND 178 (606)
Q Consensus 103 ~~~~~~~~~yv~Q~~~l~~--~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~s~g 178 (606)
....++.++|++|++.+++ ..++++++... ...... .......-+++++. +++..-.+- .+|.+...||||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~~LSgG 405 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSG-FFDSIG-IYQAVSDRQQKLAQ---QWLDILGIDKRTADAPFHSLSWG 405 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhc-cccccc-cccCCCHHHHHHHH---HHHHHcCCchhhccCchhhCCHH
Confidence 1234577999999976544 35777765431 111000 00111222233333 333333332 468899999999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHh-hcceeeeecCCcEEEE
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG-RTIICTIHQPSATLFQ-MFDQVYLLSGGQCLYQ 256 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g-~tii~~~H~~~~~i~~-~~D~v~~L~~G~~~~~ 256 (606)
|||||.||+||+.+|++|+|||||+|||+.++..+.+.|++++++| .|||++|||++ .+.+ .+|++++|++|++++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999999998875 57999999987 4555 5899999999998765
Q ss_pred cC
Q psy13765 257 GA 258 (606)
Q Consensus 257 G~ 258 (606)
-.
T Consensus 485 ~~ 486 (490)
T PRK10938 485 VQ 486 (490)
T ss_pred ec
Confidence 43
No 309
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=329.19 Aligned_cols=216 Identities=19% Similarity=0.309 Sum_probs=167.8
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--- 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--- 103 (606)
..|+++|+++.. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...
T Consensus 249 ~~i~~~~l~~~~----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~ 317 (491)
T PRK10982 249 VILEVRNLTSLR----------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK-SAGTITLHGKKINNHNA 317 (491)
T ss_pred cEEEEeCccccc----------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC-CccEEEECCEECCCCCH
Confidence 368999998751 3599999999999999999999999999999999999876 59999999976532
Q ss_pred -hhhcccEEEEccCCC---CCCCCcHHHH--HHHcCCccccCCccccCC-hHHHHHHHHHHHHhcCCcc--cccCCCCCC
Q psy13765 104 -NAFRRVSCYIQQDDR---LQPLLTIENV--MSLLGLDESQNTRSSQLS-GGQKKRLSIALELINNPRV--MFLDEPTTS 174 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~~---l~~~ltv~~~--l~~~gl~~~~~~~~~~lS-gGqrqRv~ia~~L~~~~~~--~~~de~~~~ 174 (606)
...++.++|++|++. +++.+|+.+. .+.+ ...... .+.++ ..+++++.-..+.+ .+ -..|.+...
T Consensus 318 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~~ 391 (491)
T PRK10982 318 NEAINHGFALVTEERRSTGIYAYLDIGFNSLISNI--RNYKNK-VGLLDNSRMKSDTQWVIDSM---RVKTPGHRTQIGS 391 (491)
T ss_pred HHHHHCCCEEcCCchhhCCcccCCcHHHheehhhh--hhhccc-ccccCcHHHHHHHHHHHHhc---CccCCCccccccc
Confidence 223566999999853 6777776432 1111 000000 01111 22233333222222 22 146899999
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
|||||||||.||+|++.+|+||+|||||+|||+.++..++++|++++++|.|||++|||++ .+.++|||+++|++|+++
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVA 470 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999888999999999986 577999999999999999
Q ss_pred EEcChh
Q psy13765 255 YQGATD 260 (606)
Q Consensus 255 ~~G~~~ 260 (606)
..++.+
T Consensus 471 ~~~~~~ 476 (491)
T PRK10982 471 GIVDTK 476 (491)
T ss_pred EEEccc
Confidence 877653
No 310
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.8e-35 Score=287.45 Aligned_cols=192 Identities=21% Similarity=0.284 Sum_probs=147.8
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~ 108 (606)
|+++|++++++ ++.+++ +|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..... ++
T Consensus 2 l~~~~l~~~~~--------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~-~~ 70 (195)
T PRK13541 2 LSLHQLQFNIE--------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP-SSGNIYYKNCNINNIA-KP 70 (195)
T ss_pred eEEEEeeEEEC--------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCcccChhh-hh
Confidence 78999999873 244554 9999999999999999999999999999999876 5999999998754322 35
Q ss_pred cEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHh
Q psy13765 109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE 188 (606)
Q Consensus 109 ~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~a 188 (606)
.++|++|++.+++..|+.+.+....... +...++.-+.+.+.-. -..+++...+|+|||||+.||+|
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~-----------~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rl~la~a 137 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIY-----------NSAETLYAAIHYFKLH--DLLDEKCYSLSSGMQKIVAIARL 137 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhc-----------ccHHHHHHHHHHcCCH--hhhccChhhCCHHHHHHHHHHHH
Confidence 6899999988888889877664321100 0112222111221111 13577788899999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee
Q psy13765 189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY 246 (606)
Q Consensus 189 L~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~ 246 (606)
++++|++++|||||+|||+.++..+.+.|++.+++|+|+|+++|++.. + +.+|-+.
T Consensus 138 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i-~~~~~~~ 193 (195)
T PRK13541 138 IACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS-I-KSAQILQ 193 (195)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc-c-chhheec
Confidence 999999999999999999999999999998777779999999999873 3 5566553
No 311
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.6e-35 Score=361.56 Aligned_cols=216 Identities=23% Similarity=0.284 Sum_probs=168.4
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~ 104 (606)
.|+++||+++|+. +.+++|+|+|++|++||.+||+||||||||||+++|.|+.++ .+|+|.+||.+. +..
T Consensus 1234 ~I~f~nVsf~Y~~------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p-~~G~I~IdG~di~~i~~~ 1306 (1495)
T PLN03232 1234 SIKFEDVHLRYRP------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL-EKGRIMIDDCDVAKFGLT 1306 (1495)
T ss_pred cEEEEEEEEEECC------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCceEEECCEEhhhCCHH
Confidence 6999999999842 235799999999999999999999999999999999999887 599999999864 457
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH----HHHHHhcCCcc--cccCCCCCCCCch
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS----IALELINNPRV--MFLDEPTTSNPND 178 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~----ia~~L~~~~~~--~~~de~~~~~s~g 178 (606)
.+|++++|||||+.+++. |+.+.+...+ +.|-.|-.++. +..-+...|+= -..+|...++|||
T Consensus 1307 ~lR~~i~iVpQdp~LF~g-TIr~NL~~~~----------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgG 1375 (1495)
T PLN03232 1307 DLRRVLSIIPQSPVLFSG-TVRFNIDPFS----------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVG 1375 (1495)
T ss_pred HHHhhcEEECCCCeeeCc-cHHHHcCCCC----------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHH
Confidence 889999999999999976 7654432110 11222211111 00001111211 1234555667777
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
||||+.|||||+++|+||+||||||+||+.+...+.+.|++.. +++|+|+++|+++. + ..||+|++|++|++++.|+
T Consensus 1376 QrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVL~~G~ivE~Gt 1452 (1495)
T PLN03232 1376 QRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT-I-IDCDKILVLSSGQVLEYDS 1452 (1495)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEECC
Confidence 7777778888888899999999999999999999999999874 47999999999864 4 5699999999999999999
Q ss_pred hhHHHH
Q psy13765 259 TDQLVN 264 (606)
Q Consensus 259 ~~~~~~ 264 (606)
++++.+
T Consensus 1453 ~~eLl~ 1458 (1495)
T PLN03232 1453 PQELLS 1458 (1495)
T ss_pred HHHHHh
Confidence 999864
No 312
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.6e-36 Score=295.06 Aligned_cols=207 Identities=26% Similarity=0.438 Sum_probs=163.7
Q ss_pred EEEEEeeEEEEecCCc-----------c--cccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEE
Q psy13765 28 EIKFKDLTYTVSTGLG-----------F--KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI 94 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~-----------~--~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I 94 (606)
.+..+||++.|+.... + ++....+++|+||+|++|++++.+|||||||||+||+|+|+..| .+|.|
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p-~~G~v 81 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP-TSGKV 81 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc-CCCeE
Confidence 4667788877653211 1 12234589999999999999999999999999999999999887 59999
Q ss_pred EECCccC-C-hhhhcccEEEEc-cCCCCCCC------CcH----------------HHHHHHcCCccccCCccccCChHH
Q psy13765 95 LTNGHSR-N-INAFRRVSCYIQ-QDDRLQPL------LTI----------------ENVMSLLGLDESQNTRSSQLSGGQ 149 (606)
Q Consensus 95 ~~~G~~~-~-~~~~~~~~~yv~-Q~~~l~~~------ltv----------------~~~l~~~gl~~~~~~~~~~lSgGq 149 (606)
.+||... + .+++-+.+++|+ |...+.-. +.| +.+.+.++++...+.+++.||-||
T Consensus 82 ~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGq 161 (325)
T COG4586 82 RVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQ 161 (325)
T ss_pred EecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchH
Confidence 9999753 2 244556676665 33333222 222 445566777777777788888888
Q ss_pred HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Q psy13765 150 KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTII 228 (606)
Q Consensus 150 rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii 228 (606)
|.|+.+|.+|+++ |+||||||||-|||..++..+.+.|++..+ ++.||+
T Consensus 162 RmraeLaaaLLh~------------------------------p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVl 211 (325)
T COG4586 162 RMRAELAAALLHP------------------------------PKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVL 211 (325)
T ss_pred HHHHHHHHHhcCC------------------------------CcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEE
Confidence 8887766555555 999999999999999999999999999987 489999
Q ss_pred EEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHHH
Q psy13765 229 CTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYL 266 (606)
Q Consensus 229 ~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f 266 (606)
.+||+.+ .+..+||||++|+.|+++|.|+.+++.+-|
T Consensus 212 lTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 212 LTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred EEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence 9999987 588999999999999999999999988755
No 313
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.8e-35 Score=360.26 Aligned_cols=217 Identities=22% Similarity=0.289 Sum_probs=166.9
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
-.|+++||+++|+. +.+++|+|+|++|++||.+||+|+||||||||+++|.|+.++ .+|+|.+||.+. +.
T Consensus 1236 g~I~f~nVsf~Y~~------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p-~~G~I~IDG~dI~~i~l 1308 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL-ERGRILIDGCDISKFGL 1308 (1622)
T ss_pred CcEEEEEEEEEeCC------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC-CCceEEECCEecccCCH
Confidence 36999999999842 235699999999999999999999999999999999999877 599999999864 45
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHH----HHHHHHHHhcCCccc--ccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK----RLSIALELINNPRVM--FLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrq----Rv~ia~~L~~~~~~~--~~de~~~~~s~ 177 (606)
..+|+++++||||+.+|.. |+.+.+...+ +.+-.|-. ++.+-.-+...|+=+ ...|....+||
T Consensus 1309 ~~LR~~IsiVpQdp~LF~G-TIreNLd~~~----------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSg 1377 (1622)
T PLN03130 1309 MDLRKVLGIIPQAPVLFSG-TVRFNLDPFN----------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSV 1377 (1622)
T ss_pred HHHHhccEEECCCCccccc-cHHHHhCcCC----------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCH
Confidence 7889999999999999876 6644432211 01111111 111111111111110 22344556777
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||+.|||||+++|+||+||||||+||+.+...+.+.|++.. +++|+|+++|+++. + ..||||++|++|++++.|
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t-I-~~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEeC
Confidence 77777777777777799999999999999999999999999875 48999999999874 4 569999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++++
T Consensus 1455 t~~eLl~ 1461 (1622)
T PLN03130 1455 TPENLLS 1461 (1622)
T ss_pred CHHHHHh
Confidence 9999874
No 314
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-35 Score=328.03 Aligned_cols=211 Identities=20% Similarity=0.287 Sum_probs=166.2
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~ 108 (606)
|+++|++++| +++++|+|+||+|++||+++|+||||||||||||+|+|+.++ .+|+|.++|. +
T Consensus 2 l~i~~ls~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~~--------~ 64 (530)
T PRK15064 2 LSTANITMQF--------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP-SAGNVSLDPN--------E 64 (530)
T ss_pred EEEEEEEEEe--------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCC--------C
Confidence 7899999987 235799999999999999999999999999999999999876 5899999873 3
Q ss_pred cEEEEccCCCCCCCCcHHHHHHHcCCccc----------cCCc----------------cccCChHH-HHHHHHHHHHhc
Q psy13765 109 VSCYIQQDDRLQPLLTIENVMSLLGLDES----------QNTR----------------SSQLSGGQ-KKRLSIALELIN 161 (606)
Q Consensus 109 ~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~----------~~~~----------------~~~lSgGq-rqRv~ia~~L~~ 161 (606)
.++|++|++.+++.+|+.+.+... .... .... ...+.+.+ ++|+. +++.
T Consensus 65 ~i~~~~q~~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ 140 (530)
T PRK15064 65 RLGKLRQDQFAFEEFTVLDTVIMG-HTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAG---ELLL 140 (530)
T ss_pred EEEEEeccCCcCCCCcHHHHHHHh-hHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHH---HHHH
Confidence 589999999999999987665421 1000 0000 00011112 23333 2333
Q ss_pred CCcc--cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q psy13765 162 NPRV--MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLF 239 (606)
Q Consensus 162 ~~~~--~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~ 239 (606)
.-.+ ...+.+...||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++ .|.|||+++|++. .+.
T Consensus 141 ~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~ 216 (530)
T PRK15064 141 GVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLN 216 (530)
T ss_pred hCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHH
Confidence 3233 134678899999999999999999999999999999999999999999999863 5899999999977 577
Q ss_pred hhcceeeeecCCcE-EEEcChhHHHH
Q psy13765 240 QMFDQVYLLSGGQC-LYQGATDQLVN 264 (606)
Q Consensus 240 ~~~D~v~~L~~G~~-~~~G~~~~~~~ 264 (606)
++||++++|++|++ ++.|++++..+
T Consensus 217 ~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 217 SVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred hhcceEEEEeCCEEEEecCCHHHHHH
Confidence 89999999999999 58899887653
No 315
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=4.4e-35 Score=330.25 Aligned_cols=200 Identities=22% Similarity=0.279 Sum_probs=153.1
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~ 103 (606)
..|+++||+|+|+.+. ..++++|+|+|+++++||.++|+||||||||||+|+|+|+.+| .+|+|.+||.+.+ .
T Consensus 336 ~~i~~~~v~f~y~~~~---~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p-~~G~i~~~g~~i~~~~~ 411 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE---GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP-QEGEILLDGAAVSADSR 411 (555)
T ss_pred ceEEEEEEEEEeCCCC---CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCH
Confidence 4699999999985310 0124699999999999999999999999999999999999877 5999999998653 3
Q ss_pred hhhcccEEEEccCCCCCCCCcHH------------HHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCC
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIE------------NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~------------~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~ 171 (606)
..+++.++||+|++.++.....+ +.++.+++.+..+..+.+ .+.
T Consensus 412 ~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g------------------------~~t 467 (555)
T TIGR01194 412 DDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGG------------------------FST 467 (555)
T ss_pred HHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccc------------------------cCC
Confidence 56788999999999887654322 223333333322211111 011
Q ss_pred CCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 172 ~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~-~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
...+|||||||++|||||+++|++++|||||++||+.++..+.+.+. .++.+|+|+|+++|+++ ..+.||++++|++
T Consensus 468 ~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~ 545 (555)
T TIGR01194 468 TTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAA 545 (555)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEEC
Confidence 23466666666667777777799999999999999999999988654 56567899999999986 3578999999999
Q ss_pred CcEEEE
Q psy13765 251 GQCLYQ 256 (606)
Q Consensus 251 G~~~~~ 256 (606)
|+++..
T Consensus 546 G~i~~~ 551 (555)
T TIGR01194 546 GCIVKD 551 (555)
T ss_pred CEEEEe
Confidence 998754
No 316
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-35 Score=327.98 Aligned_cols=203 Identities=19% Similarity=0.280 Sum_probs=164.9
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~ 106 (606)
..|+++||+++|. ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|+
T Consensus 318 ~~l~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-~~G~i~~~~~------- 381 (530)
T PRK15064 318 NALEVENLTKGFD--------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP-DSGTVKWSEN------- 381 (530)
T ss_pred ceEEEEeeEEeeC--------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCc-------
Confidence 3699999999872 35699999999999999999999999999999999999876 5899999873
Q ss_pred cccEEEEccCCC--CCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCchhhhH
Q psy13765 107 RRVSCYIQQDDR--LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPNDQKKR 182 (606)
Q Consensus 107 ~~~~~yv~Q~~~--l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g~~kr 182 (606)
+.+||++|++. +++.+|+.+.+.... . ....++++. +++..-.+ -..|.+...||||||||
T Consensus 382 -~~i~~~~q~~~~~~~~~~t~~~~~~~~~-----~------~~~~~~~~~---~~l~~~~l~~~~~~~~~~~LSgGq~qr 446 (530)
T PRK15064 382 -ANIGYYAQDHAYDFENDLTLFDWMSQWR-----Q------EGDDEQAVR---GTLGRLLFSQDDIKKSVKVLSGGEKGR 446 (530)
T ss_pred -eEEEEEcccccccCCCCCcHHHHHHHhc-----c------CCccHHHHH---HHHHHcCCChhHhcCcccccCHHHHHH
Confidence 46999999864 556788877654321 0 011123332 22222222 14688999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE-EEcChhH
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL-YQGATDQ 261 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~-~~G~~~~ 261 (606)
+.||+||+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++|||+. .+.++||++++|++|+++ +.|++++
T Consensus 447 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~ 522 (530)
T PRK15064 447 MLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEE 522 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHH
Confidence 99999999999999999999999999999999999876 359999999976 577899999999999998 8898876
Q ss_pred HHH
Q psy13765 262 LVN 264 (606)
Q Consensus 262 ~~~ 264 (606)
+.+
T Consensus 523 ~~~ 525 (530)
T PRK15064 523 YLR 525 (530)
T ss_pred HHH
Confidence 543
No 317
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=5.4e-35 Score=327.88 Aligned_cols=201 Identities=25% Similarity=0.420 Sum_probs=156.0
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~ 104 (606)
.|+++||+|+|+. +++++|+|+|+++++||.++|+||||||||||+|+|+|+.++ .+|+|.+||.+. +.+
T Consensus 320 ~i~~~~v~f~y~~------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~I~~~g~~i~~~~~~ 392 (529)
T TIGR02857 320 SLEFSGLSVAYPG------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP-TEGSIAVNGVPLADADAD 392 (529)
T ss_pred eEEEEEEEEECCC------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEehhhCCHH
Confidence 6999999999853 235799999999999999999999999999999999999887 599999999864 456
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHH----HHHHHHHhcCCcc--cccCCCCCCCCch
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKR----LSIALELINNPRV--MFLDEPTTSNPND 178 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqR----v~ia~~L~~~~~~--~~~de~~~~~s~g 178 (606)
.+|+.++||+|++.+++. |+.|.+..-. .+ .+..+-.. +.+...+-..|+= ...+|....+|||
T Consensus 393 ~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~-~~--------~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 462 (529)
T TIGR02857 393 SWRDQIAWVPQHPFLFAG-TIAENIRLAR-PD--------ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGG 462 (529)
T ss_pred HHHhheEEEcCCCcccCc-CHHHHHhccC-CC--------CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHH
Confidence 788999999999999875 7655443211 11 12111111 1111111112211 1345566778888
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 248 (606)
||||++|||||+++|++++||||||+||+.++..+.+.++++. +++|+|+++|+++. .+.||++++|
T Consensus 463 q~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~~l 529 (529)
T TIGR02857 463 QAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL--AERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH--HHhCCEEEeC
Confidence 8888899999999999999999999999999999999999885 58999999999853 4789999875
No 318
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-35 Score=294.05 Aligned_cols=194 Identities=25% Similarity=0.395 Sum_probs=164.9
Q ss_pred eEEEEEeeEEEEecCCccccc-ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQE-PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA 105 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~ 105 (606)
..++++||++.++.+..+.+. ...+++||||+|++||+++|+|+||||||||-|+|.|+..| ++|+|.++|++...-
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p-t~G~i~f~g~~i~~~- 80 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP-TSGEILFEGKDITKL- 80 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC-CCceEEEcCcchhhc-
Confidence 368999999999765322222 25799999999999999999999999999999999999887 599999999874321
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCcc-ccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDE-SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~-~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~ 184 (606)
. .+ -..-.+.++++.+|+.. ..++.++++|||||||+.|||||+.+
T Consensus 81 -~--------~~--~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~---------------------- 127 (268)
T COG4608 81 -S--------KE--ERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN---------------------- 127 (268)
T ss_pred -c--------hh--HHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC----------------------
Confidence 1 00 00013678899999876 78889999999999999977777766
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
|+++++|||||.||...+.+++++|+++.++ |.|.++++||.+ .+..++||+.+|..|++++.|+.+++.
T Consensus 128 --------P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 128 --------PKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred --------CcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHHHh
Confidence 9999999999999999999999999999875 999999999977 588999999999999999999999886
Q ss_pred H
Q psy13765 264 N 264 (606)
Q Consensus 264 ~ 264 (606)
.
T Consensus 199 ~ 199 (268)
T COG4608 199 S 199 (268)
T ss_pred h
Confidence 4
No 319
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-34 Score=278.36 Aligned_cols=234 Identities=24% Similarity=0.304 Sum_probs=182.2
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CccEEEECCccCC---
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG-VTGQILTNGHSRN--- 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~-~~G~I~~~G~~~~--- 102 (606)
..++++||++++. ++|.||++||++|++||+.+||||||||||||.++|+|..... ++|+|.++|+++.
T Consensus 2 ~~L~I~dLhv~v~-------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 2 MMLEIKDLHVEVE-------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74 (251)
T ss_pred ceeEEeeeEEEec-------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC
Confidence 4689999999973 2258999999999999999999999999999999999974322 5899999998642
Q ss_pred h-hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhh
Q psy13765 103 I-NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181 (606)
Q Consensus 103 ~-~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~k 181 (606)
+ .+.|+.+..-+|.|.=+|..++.+.+.... +.....+. +-.-=.+++.-+.+.+.-++-.+--.--.+.||||||
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~-n~~~~~~~--~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkK 151 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAM-NARRGARG--ILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKK 151 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHH-Hhhhcccc--ccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHH
Confidence 3 344667888999999999999888776421 11111111 1111123333333333332222222233457999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc--ceeeeecCCcEEEEcCh
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF--DQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~--D~v~~L~~G~~~~~G~~ 259 (606)
|.+|+..++.+|++.+||||-||||..+-+.+.+.+++++++|.+++++||... +..+. |++.+|.+|+++..|.+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r--ll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR--LLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHhhcCCCEEEEEECCEEEecCCH
Confidence 999999999999999999999999999999999999999999999999999954 56666 99999999999999999
Q ss_pred hHHHHHHHhCCCCC
Q psy13765 260 DQLVNYLSSVNLPC 273 (606)
Q Consensus 260 ~~~~~~f~~~g~~~ 273 (606)
++..+++.-||.|
T Consensus 230 -el~~~le~~gy~~ 242 (251)
T COG0396 230 -ELAEELEEKGYDW 242 (251)
T ss_pred -HHHHHHHHhchHH
Confidence 8999999999865
No 320
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=5.4e-35 Score=310.00 Aligned_cols=216 Identities=23% Similarity=0.348 Sum_probs=173.5
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---- 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---- 102 (606)
..++++|+++.|+ ...+++|||+++++||+.||+|.||||||||+|+|.|.+.| .+|+|.++|++..
T Consensus 3 ~~l~~~~itK~f~--------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P-~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 3 PALEMRGITKRFP--------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP-DSGEIRVDGKEVRIKSP 73 (501)
T ss_pred ceEEEeccEEEcC--------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccC-CcceEEECCEEeccCCH
Confidence 3589999999973 56799999999999999999999999999999999999987 5999999998753
Q ss_pred hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhh
Q psy13765 103 INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKK 181 (606)
Q Consensus 103 ~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~k 181 (606)
.+..+..||.|+|+..+.|.+||.|.+- +|.+......+ +.+.- ++|+. ++..+=.+ +=.|+.++.||-||||
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENii-Lg~e~~~~~~~-~~~~~-~~~i~---~l~~~yGl~vdp~~~V~dLsVG~qQ 147 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENII-LGLEPSKGGLI-DRRQA-RARIK---ELSERYGLPVDPDAKVADLSVGEQQ 147 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhh-hcCcccccccc-CHHHH-HHHHH---HHHHHhCCCCCccceeecCCcchhH
Confidence 2456778999999999999999955432 34433211111 11121 23332 22221111 1247778888999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
||+|-+||.++|++|||||||+-|-|...+++++.+++++++|+|||++||... ++.++|||+.+|++|+++..-+
T Consensus 148 RVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 148 RVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999999999999999999999999999999999987 6889999999999999876554
No 321
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.1e-34 Score=327.06 Aligned_cols=213 Identities=22% Similarity=0.368 Sum_probs=167.6
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~ 106 (606)
..|+++||+++|. +++.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~-------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p-~~G~i~~~~~------- 69 (556)
T PRK11819 5 YIYTMNRVSKVVP-------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-FEGEARPAPG------- 69 (556)
T ss_pred EEEEEeeEEEEeC-------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCC-------
Confidence 4699999999973 136799999999999999999999999999999999999876 5899999752
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccc------c-------CCcccc-----------------CCh-HHHHHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDES------Q-------NTRSSQ-----------------LSG-GQKKRLSI 155 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~------~-------~~~~~~-----------------lSg-GqrqRv~i 155 (606)
..+|||+|++.+++.+|+.+.+.. ++... . ...... +.+ ...+|+.-
T Consensus 70 -~~i~~v~Q~~~~~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (556)
T PRK11819 70 -IKVGYLPQEPQLDPEKTVRENVEE-GVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEI 147 (556)
T ss_pred -CEEEEEecCCCCCCCCcHHHHHHH-hhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence 459999999999999999776543 11000 0 000000 000 11334443
Q ss_pred HHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 156 a~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
+...+.-+ ..|.+...|||||||||.||+||+.+|++|||||||+|||+.+...+.+.|+++. .|||++||++.
T Consensus 148 ~l~~~gl~---~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~ 221 (556)
T PRK11819 148 AMDALRCP---PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRY 221 (556)
T ss_pred HHHhCCCC---cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHH
Confidence 33333221 2588999999999999999999999999999999999999999999999998873 59999999976
Q ss_pred hHHHhhcceeeeecCCcEE-EEcChhHHH
Q psy13765 236 ATLFQMFDQVYLLSGGQCL-YQGATDQLV 263 (606)
Q Consensus 236 ~~i~~~~D~v~~L~~G~~~-~~G~~~~~~ 263 (606)
.+...||++++|++|+++ +.|+.++..
T Consensus 222 -~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 222 -FLDNVAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred -HHHhhcCeEEEEeCCEEEEecCCHHHHH
Confidence 577899999999999986 889877643
No 322
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.5e-34 Score=293.43 Aligned_cols=187 Identities=18% Similarity=0.278 Sum_probs=146.4
Q ss_pred cceeeeEEEe-----CCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcH
Q psy13765 51 VLKNLCGRFP-----SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI 125 (606)
Q Consensus 51 iL~~vs~~i~-----~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv 125 (606)
.++|++++++ +||+++|+||||||||||+++|+|+.++ .+|+|.++|. .++|++|+....+..|+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p-~~G~i~~~g~---------~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP-DEGDIEIELD---------TVSYKPQYIKADYEGTV 78 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCCeEEECCc---------eEEEecccccCCCCCCH
Confidence 6677777775 7999999999999999999999999876 5999999984 58999999887778899
Q ss_pred HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCC
Q psy13765 126 ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTG 204 (606)
Q Consensus 126 ~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsg 204 (606)
.+.+.... ... .. ..++. .+++..-.+ -.+|.+...|||||||||+||+||+.+|++++|||||++
T Consensus 79 ~e~l~~~~-~~~-----~~----~~~~~---~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 79 RDLLSSIT-KDF-----YT----HPYFK---TEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHh-hhc-----cc----cHHHH---HHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 88765321 100 00 01111 122222222 146788889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEE--EEcChhH
Q psy13765 205 LDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCL--YQGATDQ 261 (606)
Q Consensus 205 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~--~~G~~~~ 261 (606)
||+.++..+.+.|++++++ |+|||+++|++. .+..+||++++|+++..+ ..+++.+
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 9999999999999999764 899999999976 577899999999764433 3455544
No 323
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.3e-34 Score=270.35 Aligned_cols=144 Identities=33% Similarity=0.447 Sum_probs=127.9
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~ 108 (606)
++++|+++.+. ++++++++|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|+ +
T Consensus 1 l~~~~l~~~~~--------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~--------~ 63 (144)
T cd03221 1 IELENLSKTYG--------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGST--------V 63 (144)
T ss_pred CEEEEEEEEEC--------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCe--------E
Confidence 46889999863 24699999999999999999999999999999999999876 5999999984 4
Q ss_pred cEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHh
Q psy13765 109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE 188 (606)
Q Consensus 109 ~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~a 188 (606)
.++|++| ||+||+||+++|++|+.+
T Consensus 64 ~i~~~~~-----------------------------lS~G~~~rv~laral~~~-------------------------- 88 (144)
T cd03221 64 KIGYFEQ-----------------------------LSGGEKMRLALAKLLLEN-------------------------- 88 (144)
T ss_pred EEEEEcc-----------------------------CCHHHHHHHHHHHHHhcC--------------------------
Confidence 6899998 888888888876666666
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 189 L~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
|+++++||||+|||+.++..+.+.++++ ++|+++++|+++ .+.++||++++|++|+
T Consensus 89 ----p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 89 ----PNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred ----CCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999887 479999999976 5678899999999885
No 324
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.6e-34 Score=356.36 Aligned_cols=217 Identities=19% Similarity=0.251 Sum_probs=168.6
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
-.|+++||+++|+. +.+.+|+|||++|++||.+||+|+||||||||+++|.|+..+ .+|+|.+||.++ +.
T Consensus 1283 g~I~f~nVsf~Y~~------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~-~~G~I~IdG~dI~~i~~ 1355 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES-AEGEIIIDGLNIAKIGL 1355 (1522)
T ss_pred CcEEEEEEEEEeCC------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC-CCCeEEECCEEccccCH
Confidence 36999999999853 224699999999999999999999999999999999999877 589999999875 45
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHH---HHHh-cCCccc--ccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIA---LELI-NNPRVM--FLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia---~~L~-~~~~~~--~~de~~~~~s~ 177 (606)
..+|+++++||||+.+|+. |+.+.++-.+ +.|-.|-.++.-. .+.+ ..|+=+ ..+|....+||
T Consensus 1356 ~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~----------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg 1424 (1522)
T TIGR00957 1356 HDLRFKITIIPQDPVLFSG-SLRMNLDPFS----------QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSV 1424 (1522)
T ss_pred HHHHhcCeEECCCCcccCc-cHHHHcCccc----------CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCH
Confidence 7889999999999999986 6655443211 1222221111100 0111 111111 23444556777
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||+.|||||+++|+||+||||||+||+.+...+.+.|++.. +++|+|+++|+++. + ..+|||++|++|++++.|
T Consensus 1425 GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVld~G~IvE~G 1501 (1522)
T TIGR00957 1425 GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT-I-MDYTRVIVLDKGEVAEFG 1501 (1522)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEEC
Confidence 77777778888888899999999999999999999999998764 47999999999874 4 679999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++++
T Consensus 1502 ~~~eLl~ 1508 (1522)
T TIGR00957 1502 APSNLLQ 1508 (1522)
T ss_pred CHHHHHh
Confidence 9999875
No 325
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=9.4e-35 Score=325.95 Aligned_cols=189 Identities=25% Similarity=0.412 Sum_probs=140.4
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--IN 104 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~ 104 (606)
..|+++||+|+|+. ++++|+|+|+++++||.+||+||||||||||+|+|+|+.+| .+|+|.+||.+.+ .+
T Consensus 333 ~~I~~~~vsf~Y~~-------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~i~g~~i~~~~~ 404 (529)
T TIGR02868 333 PTLELRDLSFGYPG-------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP-LQGEVTLDGVSVSSLQD 404 (529)
T ss_pred ceEEEEEEEEecCC-------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEhhhHHH
Confidence 46999999999842 24599999999999999999999999999999999999887 5999999997543 56
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHH---HHHhc-CCcc--cccCCCCCCCCch
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIA---LELIN-NPRV--MFLDEPTTSNPND 178 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia---~~L~~-~~~~--~~~de~~~~~s~g 178 (606)
.+|+.++||+|++.+++. |+.|.+.. |-.+ .|-.+-+++.-. .+.+. -|+= -...|....+|||
T Consensus 405 ~lr~~i~~V~Q~~~lF~~-TI~eNI~~-g~~~--------~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 405 ELRRRISVFAQDAHLFDT-TVRDNLRL-GRPD--------ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred HHHhheEEEccCcccccc-cHHHHHhc-cCCC--------CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence 788999999999999876 55443322 1111 111111111100 01111 1110 1223445567777
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP 234 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 234 (606)
||||++|||||+++|+||+||||||+||+.++..+.+.++++. +++|+|+++|++
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 7777778888888899999999999999999999999999764 479999999984
No 326
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=8.8e-35 Score=306.67 Aligned_cols=187 Identities=27% Similarity=0.447 Sum_probs=150.9
Q ss_pred EECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccC
Q psy13765 67 IMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL 145 (606)
Q Consensus 67 IiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~l 145 (606)
|+|||||||||||++|+|+.++ .+|+|.++|++... ...++.++|++|++.+++.+|+.+.+... +.. ...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p-~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~-~~~------~~~ 72 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP-DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFG-LKM------RKV 72 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC-CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHH-Hhh------cCC
Confidence 6899999999999999999876 59999999987532 23457899999999999999997766531 110 012
Q ss_pred ChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q psy13765 146 SGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ- 223 (606)
Q Consensus 146 SgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~- 223 (606)
+..+ ++++.-+.+.+.-. -.+|.+...|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 73 ~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 73 PRAEIKPRVLEALRLVQLE--EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred CHHHHHHHHHHHHHHcCCc--chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 2222 33443333333221 1568888999999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 224 GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 224 g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
|+|+|++||++. ++.++||++++|++|+++..|+++++.+
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 899999999986 5778999999999999999999988753
No 327
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.6e-34 Score=287.04 Aligned_cols=194 Identities=18% Similarity=0.204 Sum_probs=151.5
Q ss_pred ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEE-ECCccCChhhhcccEEEEccCCCCCCCCcHHHH
Q psy13765 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQIL-TNGHSRNINAFRRVSCYIQQDDRLQPLLTIENV 128 (606)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~-~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~ 128 (606)
.+|+|||++|++||+++|+||||||||||+|+|+|+.++ .+|+|. ++|.... +.|++.+++.+|+.+.
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~sG~i~~~~~~~~~----------~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP-DEGDFIGLRGDALP----------LGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-CCCCEEEecCceec----------cccccccCCcCcHHHH
Confidence 379999999999999999999999999999999999876 599997 7774321 2356678889999877
Q ss_pred HHHc-CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCH
Q psy13765 129 MSLL-GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207 (606)
Q Consensus 129 l~~~-gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~ 207 (606)
+... +... .+.-+.+. ....+..-+ -..|.+...+|+|||||++||+||+.+|++++|||||+++|+
T Consensus 70 l~~~~~~~~--------~~~~~~~~--~~~~~~~l~--~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 70 ARMMASLYG--------LDGDEFSH--FCYQLTQLE--QCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHcC--------CCHHHHHH--HHHHHhChh--HHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 7642 1111 11111111 111111111 135778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHHHHh
Q psy13765 208 QSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSS 268 (606)
Q Consensus 208 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~~ 268 (606)
.++..+.+.+.+..+ ++|+|+++|++. .+.++||++++|++|++++.|+.++..++++.
T Consensus 138 ~~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 138 ATQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 999999998865443 468999999987 46789999999999999999999998877654
No 328
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.8e-34 Score=323.47 Aligned_cols=214 Identities=21% Similarity=0.361 Sum_probs=166.9
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~ 106 (606)
..++++||+++|+ +++.+|+|+|++|++||+++|+|||||||||||++|+|+.++ .+|+|.+++
T Consensus 3 ~~i~~~nls~~~~-------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p-~~G~i~~~~-------- 66 (552)
T TIGR03719 3 YIYTMNRVSKVVP-------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-FNGEARPAP-------- 66 (552)
T ss_pred EEEEEeeEEEecC-------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecC--------
Confidence 3689999999973 135799999999999999999999999999999999999876 589999975
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccc-------------cCCcccc----------------CCh--HHHHHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDES-------------QNTRSSQ----------------LSG--GQKKRLSI 155 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~-------------~~~~~~~----------------lSg--GqrqRv~i 155 (606)
+..+|||+|++.+++.+|+.+.+.. ++... ....-.. ..| +..+|+.-
T Consensus 67 ~~~i~~v~Q~~~~~~~~tv~e~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (552)
T TIGR03719 67 GIKVGYLPQEPQLDPTKTVRENVEE-GVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEI 145 (552)
T ss_pred CCEEEEEeccCCCCCCCcHHHHHHH-hhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHH
Confidence 2469999999999999999776543 11100 0000000 000 11233332
Q ss_pred HHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 156 a~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
+...+. +-..|.++..+||||||||.||+||+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++||++.
T Consensus 146 ~l~~~~---l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~ 219 (552)
T TIGR03719 146 AMDALR---CPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRY 219 (552)
T ss_pred HHhhCC---CCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHH
Confidence 222222 21258899999999999999999999999999999999999999999999999876 359999999976
Q ss_pred hHHHhhcceeeeecCCcEE-EEcChhHHHH
Q psy13765 236 ATLFQMFDQVYLLSGGQCL-YQGATDQLVN 264 (606)
Q Consensus 236 ~~i~~~~D~v~~L~~G~~~-~~G~~~~~~~ 264 (606)
.+..+||++++|++|+++ +.|+.++..+
T Consensus 220 -~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 220 -FLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred -HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 577899999999999976 7898876544
No 329
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.6e-34 Score=353.92 Aligned_cols=216 Identities=19% Similarity=0.237 Sum_probs=168.3
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Chh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NIN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~ 104 (606)
.|+|+||+++|+. +.+.+|+||||+|++||.+||+|+||||||||+++|.|+..+ .+|+|.+||.++ +.+
T Consensus 1308 ~I~f~nVsf~Y~~------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p-~~G~I~IDG~di~~i~l~ 1380 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV-CGGEIRVNGREIGAYGLR 1380 (1560)
T ss_pred eEEEEEEEEEeCC------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEcccCCHH
Confidence 6999999999853 234699999999999999999999999999999999999887 589999999875 457
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHH---HHHh-cCCcc--cccCCCCCCCCch
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIA---LELI-NNPRV--MFLDEPTTSNPND 178 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia---~~L~-~~~~~--~~~de~~~~~s~g 178 (606)
++|+.++|||||+.+|+. |+.+.++..+ +.|-.|-.++.-. .+.+ ..|+= -...|...++|||
T Consensus 1381 ~LR~~I~iVpQdp~LF~g-TIreNIdp~~----------~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgG 1449 (1560)
T PTZ00243 1381 ELRRQFSMIPQDPVLFDG-TVRQNVDPFL----------EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVG 1449 (1560)
T ss_pred HHHhcceEECCCCccccc-cHHHHhCccc----------CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHH
Confidence 889999999999999976 7654442110 1122221111100 0011 11111 1234555678888
Q ss_pred hhhHHHHHHhhhcC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 179 QKKRLSIALELINN-PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 179 ~~krl~IA~aL~~~-P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
||||+.|||||+++ |+||+||||||+||+.+...+.+.|++.. +++|+|+++|+++. ...||+|++|++|++++.|
T Consensus 1450 QrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVLd~G~VvE~G 1526 (1560)
T PTZ00243 1450 QRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHT--VAQYDKIIVMDHGAVAEMG 1526 (1560)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHH--HHhCCEEEEEECCEEEEEC
Confidence 88888888888885 89999999999999999999999998864 47999999999863 4789999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++++
T Consensus 1527 t~~eLl~ 1533 (1560)
T PTZ00243 1527 SPRELVM 1533 (1560)
T ss_pred CHHHHHh
Confidence 9999864
No 330
>KOG0056|consensus
Probab=100.00 E-value=4.6e-35 Score=306.67 Aligned_cols=210 Identities=25% Similarity=0.398 Sum_probs=162.1
Q ss_pred CceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--
Q psy13765 25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-- 102 (606)
Q Consensus 25 ~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-- 102 (606)
.+-.|+|+||+|.|+ .+|++|+||||++.||+.+|++||||+||||++++|-++... .+|.|.+||+++.
T Consensus 534 ~~G~i~fsnvtF~Y~-------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv-~sGsI~iDgqdIrnv 605 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYD-------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV-NSGSITIDGQDIRNV 605 (790)
T ss_pred cCCeEEEEEeEEecC-------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc-cCceEEEcCchHHHH
Confidence 445899999999985 458899999999999999999999999999999999998765 4999999998754
Q ss_pred -hhhhcccEEEEccCCCCCCCCc------------HHHHHHH---cCCccccCCccccCChHHHHHHHHHHHHhcCCccc
Q psy13765 103 -INAFRRVSCYIQQDDRLQPLLT------------IENVMSL---LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM 166 (606)
Q Consensus 103 -~~~~~~~~~yv~Q~~~l~~~lt------------v~~~l~~---~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~ 166 (606)
...+|+.||.||||..+|.+.. -||+.+. .++.+ ++-++.-|-+-||.
T Consensus 606 t~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHd----rIl~fPegY~t~VG------------ 669 (790)
T KOG0056|consen 606 TQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHD----RILQFPEGYNTRVG------------ 669 (790)
T ss_pred HHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHH----HHhcCchhhhhhhh------------
Confidence 4678999999999998876532 1333322 22211 12222222222221
Q ss_pred ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee
Q psy13765 167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY 246 (606)
Q Consensus 167 ~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~ 246 (606)
|....|||||||||+|||+++++|.+++|||.||+||..+.+.+...|.++++ ++|.|++.|..+. + -.+|.|+
T Consensus 670 ---ERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST-i-vnAD~IL 743 (790)
T KOG0056|consen 670 ---ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST-I-VNADLIL 743 (790)
T ss_pred ---hcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh-e-ecccEEE
Confidence 23333444444444455555555999999999999999999999999999986 7888999999885 4 4699999
Q ss_pred eecCCcEEEEcChhHHHH
Q psy13765 247 LLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 247 ~L~~G~~~~~G~~~~~~~ 264 (606)
++++|++++.|.++|+..
T Consensus 744 vi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 744 VISNGRIVERGRHEELLK 761 (790)
T ss_pred EEeCCeEeecCcHHHHHh
Confidence 999999999999999875
No 331
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.4e-34 Score=277.17 Aligned_cols=153 Identities=25% Similarity=0.384 Sum_probs=131.1
Q ss_pred EeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEE
Q psy13765 32 KDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSC 111 (606)
Q Consensus 32 ~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~ 111 (606)
.||++++ +++.+++++ +++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|. .++
T Consensus 4 ~~l~~~~--------~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~---------~i~ 64 (177)
T cd03222 4 PDCVKRY--------GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGI---------TPV 64 (177)
T ss_pred CCeEEEE--------CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCE---------EEE
Confidence 5777776 346788885 89999999999999999999999999999876 5999999984 278
Q ss_pred EEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhc
Q psy13765 112 YIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELIN 191 (606)
Q Consensus 112 yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~ 191 (606)
|++|+.. ||||||||+++|++|+.+
T Consensus 65 ~~~q~~~--------------------------LSgGq~qrv~laral~~~----------------------------- 89 (177)
T cd03222 65 YKPQYID--------------------------LSGGELQRVAIAAALLRN----------------------------- 89 (177)
T ss_pred EEcccCC--------------------------CCHHHHHHHHHHHHHhcC-----------------------------
Confidence 9998653 899999988877666666
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHhhcceeeeecCCcEEEE--cChh
Q psy13765 192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG-RTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ--GATD 260 (606)
Q Consensus 192 ~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g-~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~--G~~~ 260 (606)
|++++|||||+|||+.++..+.+.++++++++ .|||+++|++. .+.++||++++|+++-.++. |+|.
T Consensus 90 -p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 90 -ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred -CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCc
Confidence 99999999999999999999999999998775 99999999976 56678999999998766655 5554
No 332
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.2e-34 Score=276.05 Aligned_cols=164 Identities=29% Similarity=0.374 Sum_probs=137.1
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHH
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIE 126 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~ 126 (606)
..+++|+|+|+++++||+++|+||||||||||||+|.+ .+|++.++|.... ..++.++|++| .
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~--~~~~~~~~~~q----------~ 68 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPK--FSRNKLIFIDQ----------L 68 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCcccc--cccccEEEEhH----------H
Confidence 34679999999999999999999999999999999953 3799999986321 12345889988 5
Q ss_pred HHHHHcCCcc-ccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC
Q psy13765 127 NVMSLLGLDE-SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205 (606)
Q Consensus 127 ~~l~~~gl~~-~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL 205 (606)
+.++.+++.. ..++++.+||||||||+++|++|+.+|| |++++|||||+||
T Consensus 69 ~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~----------------------------p~llLlDEPt~~L 120 (176)
T cd03238 69 QFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPP----------------------------GTLFILDEPSTGL 120 (176)
T ss_pred HHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCC----------------------------CCEEEEeCCcccC
Confidence 7888999976 4788889999999999986666665543 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 206 DSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 206 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|+.++..+.+.|++++++|+|||+++|++.. + +.||++++|.+|+....|
T Consensus 121 D~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~~~~~ 170 (176)
T cd03238 121 HQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWIIDFGPGSGKSGG 170 (176)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEECCCCCCCCc
Confidence 9999999999999998789999999999864 4 689999999776554433
No 333
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3e-34 Score=350.97 Aligned_cols=211 Identities=25% Similarity=0.395 Sum_probs=163.4
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEEC-CccC---Ch
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN-GHSR---NI 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~-G~~~---~~ 103 (606)
.|+++||+++|+.+ .++++|+|+|++|++||++||+||||||||||+++|+|+++| .+|+|.+| |.+. +.
T Consensus 382 ~I~~~nVsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~i~~g~~i~~~~~ 455 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR-----KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP-TEGDIIINDSHNLKDINL 455 (1466)
T ss_pred cEEEEEEEEEcCCC-----CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC-CCCeEEEeCCcchhhCCH
Confidence 79999999998531 235699999999999999999999999999999999999887 59999995 5543 34
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCcccc---------C--------------C----------------cc--
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQ---------N--------------T----------------RS-- 142 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~---------~--------------~----------------~~-- 142 (606)
..+|+.+|||+|++.+++. |+.+.+.. |..... + . .+
T Consensus 456 ~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1466)
T PTZ00265 456 KWWRSKIGVVSQDPLLFSN-SIKNNIKY-SLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE 533 (1466)
T ss_pred HHHHHhccEecccccchhc-cHHHHHHh-cCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence 5678899999999999985 88766643 221000 0 0 00
Q ss_pred --------ccCChHHHHHHHHHHHHh-------cCCccc--ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC
Q psy13765 143 --------SQLSGGQKKRLSIALELI-------NNPRVM--FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205 (606)
Q Consensus 143 --------~~lSgGqrqRv~ia~~L~-------~~~~~~--~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL 205 (606)
...+- .++.-|...+ .-|+-+ ..++....||||||||++|||||+++|+||+||||||+|
T Consensus 534 ~l~~~~~~~~~~~---~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaL 610 (1466)
T PTZ00265 534 LIEMRKNYQTIKD---SEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSL 610 (1466)
T ss_pred hhhcccccccCCH---HHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 00111 1222222221 122211 346778889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765 206 DSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGG 251 (606)
Q Consensus 206 D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G 251 (606)
|+.++..+.+.|+++++ +|+|+|+++|+++. + +.||+|++|++|
T Consensus 611 D~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 611 DNKSEYLVQKTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred CHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 99999999999999976 58999999999864 4 789999999886
No 334
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.9e-35 Score=269.33 Aligned_cols=194 Identities=25% Similarity=0.390 Sum_probs=160.4
Q ss_pred ccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---ChhhhcccEEEEccCCCCCCC
Q psy13765 46 QEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NINAFRRVSCYIQQDDRLQPL 122 (606)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~~~~~~~~yv~Q~~~l~~~ 122 (606)
.+...+|+++|+++++||..+|.||||||||||+|+++.+.++ .+|++++.|++. ++..+|+.++|+.|.+.+++.
T Consensus 13 a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp-~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP-TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred cCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC-CCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 3567899999999999999999999999999999999999887 599999999875 457899999999999999987
Q ss_pred CcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeC
Q psy13765 123 LTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200 (606)
Q Consensus 123 ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDE 200 (606)
||++.+..-- ...+++. +| ..|.+|+.+.++ .+++.+.+.+|||||||.+|+|-|..-|+||+|||
T Consensus 92 -tVeDNlifP~--~~r~rr~------dr---~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 92 -TVEDNLIFPW--QIRNRRP------DR---AAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred -chhhccccch--HHhccCC------Ch---HHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 6655433211 1112222 12 234455555555 47888888888888888889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 201 PTTGLDSQSCSQCIKLLKMIS-QQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 201 PTsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
|||.||+.+++.|-++|.++. .+++.++.+|||+.. ..+.+|+++-+..|++
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~G~~ 212 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQPGHA 212 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEeccCcc
Confidence 999999999999999999986 568999999999875 4589999999999875
No 335
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.2e-33 Score=318.65 Aligned_cols=204 Identities=21% Similarity=0.315 Sum_probs=162.0
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~ 106 (606)
..|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.+++.
T Consensus 323 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-~~G~i~~~~~------- 386 (556)
T PRK11819 323 KVIEAENLSKSF--------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP-DSGTIKIGET------- 386 (556)
T ss_pred eEEEEEeEEEEE--------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCc-------
Confidence 469999999987 335799999999999999999999999999999999999876 5999999542
Q ss_pred cccEEEEccCC-CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCCCchhhhHH
Q psy13765 107 RRVSCYIQQDD-RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 107 ~~~~~yv~Q~~-~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~s~g~~krl 183 (606)
..+||++|++ .+++.+|+.+.+... ... . ..+. ..++ +++++..-.+- ..|.+...+|||||||+
T Consensus 387 -~~i~~v~q~~~~~~~~~tv~e~l~~~-~~~-~-----~~~~-~~~~---~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 454 (556)
T PRK11819 387 -VKLAYVDQSRDALDPNKTVWEEISGG-LDI-I-----KVGN-REIP---SRAYVGRFNFKGGDQQKKVGVLSGGERNRL 454 (556)
T ss_pred -eEEEEEeCchhhcCCCCCHHHHHHhh-ccc-c-----cccc-cHHH---HHHHHHhCCCChhHhcCchhhCCHHHHHHH
Confidence 1599999996 788889997776542 110 0 0111 1111 12233333331 35788999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC-CcEE-EEcChhH
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG-GQCL-YQGATDQ 261 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~~~-~~G~~~~ 261 (606)
.||+||+.+|++|+|||||+|||+.++..+.+.|+++. | |||++|||+. .+.++||++++|++ |++. +.|+.++
T Consensus 455 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 455 HLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 99999999999999999999999999999999999873 4 8999999976 57789999999985 7776 5677655
Q ss_pred H
Q psy13765 262 L 262 (606)
Q Consensus 262 ~ 262 (606)
.
T Consensus 531 ~ 531 (556)
T PRK11819 531 Y 531 (556)
T ss_pred H
Confidence 4
No 336
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-34 Score=324.38 Aligned_cols=202 Identities=22% Similarity=0.307 Sum_probs=157.6
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~ 106 (606)
..|+++||++.| +++.+|+|+|++|++||+++|+||||||||||||+|+|..++ .+|+|.+++.
T Consensus 311 ~~l~~~~l~~~y--------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-~~G~i~~~~~------- 374 (638)
T PRK10636 311 PLLKMEKVSAGY--------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP-VSGEIGLAKG------- 374 (638)
T ss_pred ceEEEEeeEEEe--------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEECCC-------
Confidence 469999999987 346799999999999999999999999999999999999876 5999999742
Q ss_pred cccEEEEccCC--CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCchhhhH
Q psy13765 107 RRVSCYIQQDD--RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPNDQKKR 182 (606)
Q Consensus 107 ~~~~~yv~Q~~--~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g~~kr 182 (606)
..+||++|+. .+.+..|+.+.+... . ..-.++++ +.++..-.+ -..+.++..||||||||
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~~--~----------~~~~~~~~---~~~L~~~~l~~~~~~~~~~~LSgGekqR 438 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLARL--A----------PQELEQKL---RDYLGGFGFQGDKVTEETRRFSGGEKAR 438 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHHh--C----------chhhHHHH---HHHHHHcCCChhHhcCchhhCCHHHHHH
Confidence 2589999974 344444543322110 0 00112222 223322222 13467888888888888
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE-EEcChhH
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL-YQGATDQ 261 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~-~~G~~~~ 261 (606)
|.||++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+. .+.++||++++|++|+++ +.|+.++
T Consensus 439 l~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~ 514 (638)
T PRK10636 439 LVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLED 514 (638)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHH
Confidence 88999999999999999999999999999999999987 34 9999999976 577899999999999997 8899887
Q ss_pred HHH
Q psy13765 262 LVN 264 (606)
Q Consensus 262 ~~~ 264 (606)
..+
T Consensus 515 ~~~ 517 (638)
T PRK10636 515 YQQ 517 (638)
T ss_pred HHH
Confidence 643
No 337
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.3e-34 Score=290.72 Aligned_cols=197 Identities=21% Similarity=0.272 Sum_probs=141.2
Q ss_pred eeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEE-----------ECCccC
Q psy13765 33 DLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQIL-----------TNGHSR 101 (606)
Q Consensus 33 nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~-----------~~G~~~ 101 (606)
||+++|+ ..+.+|+|+| .+++||+++|+||||||||||||+|+|+.++ .+|+|. ++|++.
T Consensus 5 ~~~~~y~-------~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p-~~G~I~~~~~~~~~~~~~~g~~~ 75 (255)
T cd03236 5 EPVHRYG-------PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKP-NLGKFDDPPDWDEILDEFRGSEL 75 (255)
T ss_pred Ccceeec-------CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCC-CCceEeeccccchhhhhccCchh
Confidence 6677763 1235999999 5999999999999999999999999999877 599996 778654
Q ss_pred Ch--hh-hc--ccEEEEccCCCCCCCCcH-HHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCC
Q psy13765 102 NI--NA-FR--RVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTT 173 (606)
Q Consensus 102 ~~--~~-~~--~~~~yv~Q~~~l~~~ltv-~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~ 173 (606)
.. .. .+ ..++|++|+...++. ++ +++... + +.. .+.++ .+++..-++- ..+.+..
T Consensus 76 ~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~--l-----------~~~~~~~~~---~~~l~~~gl~~~~~~~~~ 138 (255)
T cd03236 76 QNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGEL--L-----------KKKDERGKL---DELVDQLELRHVLDRNID 138 (255)
T ss_pred hhhhHHhhhcccceeeecchhccCch-HHHHHHHHH--h-----------chhHHHHHH---HHHHHHcCCchhhcCChh
Confidence 31 11 11 247899998877774 33 222221 0 000 11111 2222222221 2455556
Q ss_pred CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
.+|+|||||+.||++|+.+|+++++||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|+ |++
T Consensus 139 ~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~ 216 (255)
T cd03236 139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEP 216 (255)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCC
Confidence 66666666666777777779999999999999999999999999999888999999999976 4667899999995 556
Q ss_pred EEEc
Q psy13765 254 LYQG 257 (606)
Q Consensus 254 ~~~G 257 (606)
.+.|
T Consensus 217 ~~~~ 220 (255)
T cd03236 217 GAYG 220 (255)
T ss_pred Ccce
Confidence 5544
No 338
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.3e-33 Score=318.74 Aligned_cols=198 Identities=21% Similarity=0.300 Sum_probs=160.5
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA 105 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~ 105 (606)
...++++|++++|. +. .|+++|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++
T Consensus 338 ~~~l~~~~ls~~~~--------~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p-~~G~I~~~-------- 399 (590)
T PRK13409 338 ETLVEYPDLTKKLG--------DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP-DEGEVDPE-------- 399 (590)
T ss_pred ceEEEEcceEEEEC--------CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEEe--------
Confidence 34699999999862 22 49999999999999999999999999999999999876 58999985
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~ 184 (606)
..++|++|+..+.+.+||.+.+... ... .+.. +++ .+++..-.+- ..|.+...|||||||||+
T Consensus 400 --~~i~y~~Q~~~~~~~~tv~e~l~~~-~~~--------~~~~--~~~---~~~L~~l~l~~~~~~~~~~LSGGe~QRva 463 (590)
T PRK13409 400 --LKISYKPQYIKPDYDGTVEDLLRSI-TDD--------LGSS--YYK---SEIIKPLQLERLLDKNVKDLSGGELQRVA 463 (590)
T ss_pred --eeEEEecccccCCCCCcHHHHHHHH-hhh--------cChH--HHH---HHHHHHCCCHHHHhCCcccCCHHHHHHHH
Confidence 1589999999888889998776542 111 1111 111 2222222221 468899999999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
||+||+.+|++|+|||||+|||+.++..+.++|++++++ |.|||+++||+. .+..+|||+++|++ ++...|..
T Consensus 464 iAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 464 IAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcC-cceeeeec
Confidence 999999999999999999999999999999999999874 899999999976 57789999999964 77776653
No 339
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2e-33 Score=316.54 Aligned_cols=203 Identities=21% Similarity=0.316 Sum_probs=161.2
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~ 106 (606)
..++++|+++++ +++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.+++.
T Consensus 321 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~G~i~~~~~------- 384 (552)
T TIGR03719 321 KVIEAENLSKGF--------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP-DSGTIKIGET------- 384 (552)
T ss_pred eEEEEeeEEEEE--------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCeEEEECCc-------
Confidence 469999999987 235799999999999999999999999999999999999876 5999999542
Q ss_pred cccEEEEccCC-CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCCCchhhhHH
Q psy13765 107 RRVSCYIQQDD-RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 107 ~~~~~yv~Q~~-~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~s~g~~krl 183 (606)
..+||++|++ .+++.+|+.+.+... ... ..++. ..++ +++++..-.+- ..|.+...+||||||||
T Consensus 385 -~~i~~v~q~~~~~~~~~tv~e~l~~~-~~~------~~~~~-~~~~---~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv 452 (552)
T TIGR03719 385 -VKLAYVDQSRDALDPNKTVWEEISGG-LDI------IQLGK-REVP---SRAYVGRFNFKGSDQQKKVGQLSGGERNRV 452 (552)
T ss_pred -eEEEEEeCCccccCCCCcHHHHHHhh-ccc------cccCc-chHH---HHHHHHhCCCChhHhcCchhhCCHHHHHHH
Confidence 1599999996 478888987766542 110 01111 1112 12333333332 36888999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC-CcEE-EEcChhH
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG-GQCL-YQGATDQ 261 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~~~-~~G~~~~ 261 (606)
.||+||+.+|++|+|||||+|||+.++..+.+.|+++. | |||++|||+. .+.++||++++|++ |++. +.|+.++
T Consensus 453 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 453 HLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 99999999999999999999999999999999999873 4 8999999976 57789999999986 5776 5566544
No 340
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.5e-33 Score=346.72 Aligned_cols=216 Identities=23% Similarity=0.296 Sum_probs=165.9
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~ 103 (606)
-.|+++||+++|+. +.+.+|+|||++|++||.+||+|+||||||||+++|.|+.+ .+|+|.+||.+.+ .
T Consensus 1216 g~I~f~nVs~~Y~~------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~ 1287 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTL 1287 (1490)
T ss_pred CeEEEEEEEEEeCC------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCH
Confidence 36999999999853 34679999999999999999999999999999999999975 4899999998753 5
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHH----HHHHHHHHhcCCcc--cccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK----RLSIALELINNPRV--MFLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrq----Rv~ia~~L~~~~~~--~~~de~~~~~s~ 177 (606)
..+|+.++||||++.+|+. |+.+.++-.+ ..+-.+-. ++.+...+...|+= ...+|...++||
T Consensus 1288 ~~lR~~is~IpQdp~LF~G-TIR~NLdp~~----------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSg 1356 (1490)
T TIGR01271 1288 QTWRKAFGVIPQKVFIFSG-TFRKNLDPYE----------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSN 1356 (1490)
T ss_pred HHHHhceEEEeCCCccCcc-CHHHHhCccc----------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCH
Confidence 6789999999999999986 6654442211 01111111 11111111111110 022344456777
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||+.|||||+++|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++. + ..||+|++|++|++++.|
T Consensus 1357 GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~t-i-~~~DrIlvL~~G~ivE~g 1433 (1490)
T TIGR01271 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEA-L-LECQQFLVIEGSSVKQYD 1433 (1490)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeC
Confidence 77777778888888899999999999999999999999999864 47999999999863 4 669999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+|+++.+
T Consensus 1434 ~p~~Ll~ 1440 (1490)
T TIGR01271 1434 SIQKLLN 1440 (1490)
T ss_pred CHHHHHc
Confidence 9999863
No 341
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.5e-34 Score=269.98 Aligned_cols=222 Identities=23% Similarity=0.356 Sum_probs=189.6
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC-ccCC---
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG-HSRN--- 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G-~~~~--- 102 (606)
..++++||++++ +.-.+|+|+||++.+||+-+|+|||||||||++++|+|..+| .+|+|+++| .++.
T Consensus 4 ~iL~~~~vsVsF--------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp-~~G~v~f~g~~dl~~~~ 74 (249)
T COG4674 4 IILYLDGVSVSF--------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP-QEGEVLFDGDTDLTKLP 74 (249)
T ss_pred ceEEEeceEEEE--------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC-CcceEEEcCchhhccCC
Confidence 578999999986 557799999999999999999999999999999999999776 589999999 4432
Q ss_pred h-hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCc-----cccCChHHHHHHHHHHHHhcCCcccccCCCCCCCC
Q psy13765 103 I-NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTR-----SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176 (606)
Q Consensus 103 ~-~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~-----~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s 176 (606)
. ...|..||.-||.|..|+.+||.+.++.. ...++. ...++.-||.|+.-..+++.-.+ -.|.+.+.||
T Consensus 75 e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA---~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~--~~~~~A~~LS 149 (249)
T COG4674 75 EHRIARAGIGRKFQKPTVFENLTVRENLELA---LNRDKSVFASLFARLRAEERRRIDELLATIGLGD--ERDRLAALLS 149 (249)
T ss_pred HHHHHHhccCccccCCeehhhccHHHHHHHH---hcCCcchHHHhhhhcChhHHHHHHHHHHHcccch--hhhhhhhhhc
Confidence 1 23356799999999999999998877642 223332 34578899999987777665422 3577788899
Q ss_pred chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256 (606)
Q Consensus 177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~ 256 (606)
-||||+++|++.++++|++|+||||++|+-.....+.-++|+.++. +++|+++.||+. .+.+++|+|.+|++|.+...
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~E 227 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHEGSVLAE 227 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEeccceeec
Confidence 9999999999999999999999999999999999999999999986 589999999987 58899999999999999999
Q ss_pred cChhHHHH
Q psy13765 257 GATDQLVN 264 (606)
Q Consensus 257 G~~~~~~~ 264 (606)
|+.+++.+
T Consensus 228 Gsld~v~~ 235 (249)
T COG4674 228 GSLDEVQN 235 (249)
T ss_pred ccHHHhhc
Confidence 99998753
No 342
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-33 Score=262.97 Aligned_cols=153 Identities=34% Similarity=0.656 Sum_probs=133.5
Q ss_pred EEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhhhc
Q psy13765 31 FKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INAFR 107 (606)
Q Consensus 31 ~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~~~ 107 (606)
++|+++.++ .+.+++++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.. ....+
T Consensus 2 ~~~~~~~~~--------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~~~~~~~~~~~ 72 (157)
T cd00267 2 IENLSFRYG--------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKDIAKLPLEELR 72 (157)
T ss_pred eEEEEEEeC--------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEEcccCCHHHHH
Confidence 678888863 24699999999999999999999999999999999999876 5999999997643 23456
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL 187 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~ 187 (606)
+.++|++| ||+||+||+++|++++.+
T Consensus 73 ~~i~~~~q-----------------------------lS~G~~~r~~l~~~l~~~------------------------- 98 (157)
T cd00267 73 RRIGYVPQ-----------------------------LSGGQRQRVALARALLLN------------------------- 98 (157)
T ss_pred hceEEEee-----------------------------CCHHHHHHHHHHHHHhcC-------------------------
Confidence 77999999 888888888866666666
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
|++++|||||+|||..++..+.+.+++++++++|+++++|+++ .+...||+++.+++|+
T Consensus 99 -----~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 99 -----PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred -----CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999877899999999976 4667789999999875
No 343
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=9.1e-33 Score=317.28 Aligned_cols=204 Identities=21% Similarity=0.349 Sum_probs=155.1
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~ 106 (606)
..|+++||++.|+ +.+.+|+|+|++|++||+++|+||||||||||||+|+|+.+| .+|+|.+++
T Consensus 507 ~~L~~~~ls~~y~-------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p-~~G~I~~~~-------- 570 (718)
T PLN03073 507 PIISFSDASFGYP-------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP-SSGTVFRSA-------- 570 (718)
T ss_pred ceEEEEeeEEEeC-------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCceEEECC--------
Confidence 4699999999873 234699999999999999999999999999999999999876 589999875
Q ss_pred cccEEEEccCCCCCCCCcH--HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCCCchhhhH
Q psy13765 107 RRVSCYIQQDDRLQPLLTI--ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQKKR 182 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv--~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~s~g~~kr 182 (606)
+..+||++|+.. +.+++ ...+...... ...+ .+++ +.++..-.+- ..+.+...||||||||
T Consensus 571 ~~~igyv~Q~~~--~~l~~~~~~~~~~~~~~-------~~~~---~~~i---~~~L~~~gl~~~~~~~~~~~LSgGqkqR 635 (718)
T PLN03073 571 KVRMAVFSQHHV--DGLDLSSNPLLYMMRCF-------PGVP---EQKL---RAHLGSFGVTGNLALQPMYTLSGGQKSR 635 (718)
T ss_pred ceeEEEEecccc--ccCCcchhHHHHHHHhc-------CCCC---HHHH---HHHHHHCCCChHHhcCCccccCHHHHHH
Confidence 246999999853 22332 2121111100 0011 1222 2233332331 3567888899999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE-EEcChhH
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL-YQGATDQ 261 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~-~~G~~~~ 261 (606)
|.||++|+.+|++|+|||||+|||+.+...+.+.|++. +| |||++|||+. .+..+||++++|++|+++ +.|+.++
T Consensus 636 vaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~ 711 (718)
T PLN03073 636 VAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHD 711 (718)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 99999999999999999999999999999998888764 34 9999999976 577899999999999998 7888776
Q ss_pred HHHH
Q psy13765 262 LVNY 265 (606)
Q Consensus 262 ~~~~ 265 (606)
...+
T Consensus 712 ~~~~ 715 (718)
T PLN03073 712 YKKT 715 (718)
T ss_pred HHHH
Confidence 5443
No 344
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.5e-33 Score=267.81 Aligned_cols=219 Identities=23% Similarity=0.336 Sum_probs=173.7
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NA 105 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~ 105 (606)
++++|+.+.+..+. ..++++|+++|++|.+|+++.|+|.||||||||+|+|+|...+ .+|+|.++|.+++. .+
T Consensus 2 i~~~~~~~~f~~g~---~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~-t~G~I~Idg~dVtk~~~~~ 77 (263)
T COG1101 2 ISLSNATKTFFKGT---PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP-TSGQILIDGVDVTKKSVAK 77 (263)
T ss_pred cccccceeeecCCC---hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc-CCceEEECceecccCCHHH
Confidence 45667777664331 3468899999999999999999999999999999999999887 59999999987653 22
Q ss_pred hcccEEEEccCCC--CCCCCcHHHHHHHcCCccccCCccccCCh--HHHHHHHHHHHHhcCCcc---cccCCCCCCCCch
Q psy13765 106 FRRVSCYIQQDDR--LQPLLTIENVMSLLGLDESQNTRSSQLSG--GQKKRLSIALELINNPRV---MFLDEPTTSNPND 178 (606)
Q Consensus 106 ~~~~~~yv~Q~~~--l~~~ltv~~~l~~~gl~~~~~~~~~~lSg--GqrqRv~ia~~L~~~~~~---~~~de~~~~~s~g 178 (606)
....++-|+|||. ..+.+|++|.+....... . -+++|. .+++|-. =++.+...++ -.++.|..-+|||
T Consensus 78 RA~~larVfQdp~~gt~~~lTieENl~la~~Rg---~-~rgl~~~ln~~~~~~-f~~~l~~l~lgLenrL~~~iglLSGG 152 (263)
T COG1101 78 RANLLARVFQDPLAGTAPELTIEENLALAESRG---K-KRGLSSALNERRRSS-FRERLARLGLGLENRLSDRIGLLSGG 152 (263)
T ss_pred HhhHHHHHhcchhhCCcccccHHHHHHHHHhcC---c-ccccchhhhHHHHHH-HHHHHhhcccchhhhhcChhhhccch
Confidence 3345788999985 588999988776543222 1 123443 3333333 3333333333 1678899999999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||-+++++|-++.|+||+|||-|++|||.++..+++.-.++.++ +.|.+|+||+++. ..++-+|.++|++|+|+.+-
T Consensus 153 QRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~-Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 153 QRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED-ALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHH-HHhhCCeEEEEeCCeEEEEc
Confidence 999999999999999999999999999999999999999998764 7899999999885 56999999999999999763
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-32 Score=314.97 Aligned_cols=209 Identities=23% Similarity=0.320 Sum_probs=155.7
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~ 108 (606)
|+++||+++| +.+.+|+||||+|++|++++|+||||||||||||+|+|..++ .+|+|.++|..
T Consensus 2 i~i~nls~~~--------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p-d~G~I~~~~~~-------- 64 (638)
T PRK10636 2 IVFSSLQIRR--------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISA-DGGSYTFPGNW-------- 64 (638)
T ss_pred EEEEEEEEEe--------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCCC--------
Confidence 7899999997 446799999999999999999999999999999999998776 59999998742
Q ss_pred cEEEEccCCCCCCCCcHHH-HHHHcC----Ccc------ccC--CccccCCh------H--HHHHHHHHHHHhcCCcc--
Q psy13765 109 VSCYIQQDDRLQPLLTIEN-VMSLLG----LDE------SQN--TRSSQLSG------G--QKKRLSIALELINNPRV-- 165 (606)
Q Consensus 109 ~~~yv~Q~~~l~~~ltv~~-~l~~~g----l~~------~~~--~~~~~lSg------G--qrqRv~ia~~L~~~~~~-- 165 (606)
.++|++|++.... .++-+ +..... +.. ..+ .....+.+ + .++|+ .+++..-.+
T Consensus 65 ~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~~lgl~~ 140 (638)
T PRK10636 65 QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRA---ASLLHGLGFSN 140 (638)
T ss_pred EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHH---HHHHHhCCCCc
Confidence 3788888653332 33322 211100 000 000 00000110 1 12333 334444333
Q ss_pred cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhccee
Q psy13765 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV 245 (606)
Q Consensus 166 ~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v 245 (606)
-.+|.+...+||||||||.||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+.++||++
T Consensus 141 ~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~d~i 216 (638)
T PRK10636 141 EQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIVDKI 216 (638)
T ss_pred hhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhcCEE
Confidence 1468899999999999999999999999999999999999999999999998765 569999999976 577899999
Q ss_pred eeecCCcEE-EEcChhHH
Q psy13765 246 YLLSGGQCL-YQGATDQL 262 (606)
Q Consensus 246 ~~L~~G~~~-~~G~~~~~ 262 (606)
++|++|++. |.|+.++.
T Consensus 217 ~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 217 IHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred EEEeCCEEEEecCCHHHH
Confidence 999999996 67876543
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.5e-32 Score=313.97 Aligned_cols=204 Identities=21% Similarity=0.384 Sum_probs=161.0
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~ 106 (606)
..|+++||++.| +++++|+|+|++|++|++++|+|||||||||||++|+|..+| .+|+|.+ |..
T Consensus 318 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-~~G~i~~-~~~------ 381 (635)
T PRK11147 318 IVFEMENVNYQI--------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA-DSGRIHC-GTK------ 381 (635)
T ss_pred ceEEEeeeEEEE--------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEE-CCC------
Confidence 469999999987 335799999999999999999999999999999999999876 5999998 432
Q ss_pred cccEEEEccCC-CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCCCchhhhHH
Q psy13765 107 RRVSCYIQQDD-RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 107 ~~~~~yv~Q~~-~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~s~g~~krl 183 (606)
-.+||++|+. .+++.+|+.+.+.... ... ... +..++ +++++..-.+. ..+.++..|||||||||
T Consensus 382 -~~i~y~~q~~~~l~~~~tv~e~l~~~~-~~~------~~~-~~~~~---~~~~l~~~~l~~~~~~~~~~~LSgGekqRl 449 (635)
T PRK11147 382 -LEVAYFDQHRAELDPEKTVMDNLAEGK-QEV------MVN-GRPRH---VLGYLQDFLFHPKRAMTPVKALSGGERNRL 449 (635)
T ss_pred -cEEEEEeCcccccCCCCCHHHHHHhhc-ccc------ccc-chHHH---HHHHHHhcCCCHHHHhChhhhCCHHHHHHH
Confidence 1599999985 5888899877665321 110 011 11122 23333332221 35778899999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec-CCcEE-EEcChhH
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS-GGQCL-YQGATDQ 261 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~-~G~~~-~~G~~~~ 261 (606)
.||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+..+||++++++ +|++. |.|+.++
T Consensus 450 ~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 450 LLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 9999999999999999999999999999999999876 459999999976 5778999999997 79986 4566554
Q ss_pred H
Q psy13765 262 L 262 (606)
Q Consensus 262 ~ 262 (606)
-
T Consensus 526 y 526 (635)
T PRK11147 526 A 526 (635)
T ss_pred H
Confidence 3
No 347
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=5.2e-32 Score=309.56 Aligned_cols=210 Identities=23% Similarity=0.299 Sum_probs=154.8
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR 107 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~ 107 (606)
.|+++||+++| +.+.+|+||||+|++|++++|+||||||||||||+|+|..++ .+|+|.++|..
T Consensus 3 ~l~i~~ls~~~--------~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p-~~G~I~~~~~~------- 66 (635)
T PRK11147 3 LISIHGAWLSF--------SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL-DDGRIIYEQDL------- 66 (635)
T ss_pred EEEEeeEEEEe--------CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCeEEEeCCCC-------
Confidence 58999999997 346799999999999999999999999999999999999776 58999998731
Q ss_pred ccEEEEccCCCCCCCCcHHHHHH-H-----------------cCCccccC---Cc------cccCCh-HHHHHHHHHHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMS-L-----------------LGLDESQN---TR------SSQLSG-GQKKRLSIALEL 159 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~-~-----------------~gl~~~~~---~~------~~~lSg-GqrqRv~ia~~L 159 (606)
.++|++|++......++.+.+. . +..+...+ .. .....+ ..++|+. ++
T Consensus 67 -~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~ 142 (635)
T PRK11147 67 -IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRIN---EV 142 (635)
T ss_pred -EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHH---HH
Confidence 2577777654333334322110 0 00000000 00 000011 1133443 23
Q ss_pred hcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q psy13765 160 INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLF 239 (606)
Q Consensus 160 ~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~ 239 (606)
+..-.+- .|.++..|||||||||.||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||++|||+. .+.
T Consensus 143 l~~lgl~-~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~-~l~ 217 (635)
T PRK11147 143 LAQLGLD-PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRS-FIR 217 (635)
T ss_pred HHhCCCC-CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHH-HHH
Confidence 3332222 48899999999999999999999999999999999999999999999999887 359999999976 577
Q ss_pred hhcceeeeecCCcEE-EEcChhHH
Q psy13765 240 QMFDQVYLLSGGQCL-YQGATDQL 262 (606)
Q Consensus 240 ~~~D~v~~L~~G~~~-~~G~~~~~ 262 (606)
+.||+++.|++|+++ +.|+.++.
T Consensus 218 ~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 218 NMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred HhcCeEEEEECCEEEEecCCHHHH
Confidence 899999999999997 56877653
No 348
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.98 E-value=6.8e-32 Score=309.33 Aligned_cols=196 Identities=20% Similarity=0.311 Sum_probs=147.5
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR 107 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~ 107 (606)
.|+++||++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.+++ +
T Consensus 451 ~i~~~nv~~~~~-------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~-~~G~i~~~~--------~ 514 (659)
T TIGR00954 451 GIKFENIPLVTP-------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV-YGGRLTKPA--------K 514 (659)
T ss_pred eEEEEeeEEECC-------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEeecC--------C
Confidence 599999999863 234699999999999999999999999999999999999876 589998764 4
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHH------hcCCc-ccccCCCCCCCCchhh
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL------INNPR-VMFLDEPTTSNPNDQK 180 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L------~~~~~-~~~~de~~~~~s~g~~ 180 (606)
+.++||+|++.+++. |+.+.+.. +... .+..-.+.+ .+++.-+.+. +.+|. .-..++....+|||||
T Consensus 515 ~~i~~v~Q~~~l~~~-tv~eni~~-~~~~-~~~~~~~~~---~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqk 588 (659)
T TIGR00954 515 GKLFYVPQRPYMTLG-TLRDQIIY-PDSS-EDMKRRGLS---DKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEK 588 (659)
T ss_pred CcEEEECCCCCCCCc-CHHHHHhc-CCCh-hhhhccCCC---HHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHH
Confidence 679999999998887 88665542 2110 000000111 1222111111 11111 0011223478999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
||++|||||+++|++++|||||+|||+.++..+.+.+++ .|+|+|+++|+++. .+.+|++++|++
T Consensus 589 QRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~--~~~~d~il~l~~ 653 (659)
T TIGR00954 589 QRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSL--WKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHH--HHhCCEEEEEeC
Confidence 999999999999999999999999999999999998875 38999999999873 488999999963
No 349
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.6e-32 Score=283.47 Aligned_cols=197 Identities=28% Similarity=0.459 Sum_probs=158.6
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
-.+.|+|++|.|. +.+++|+|+|+++++|+.+|++||||+||||++++|-+++.+ .+|.|.+||+++ ..
T Consensus 261 g~v~F~~V~F~y~-------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~-~sG~I~id~qdir~vtq 332 (497)
T COG5265 261 GAVAFINVSFAYD-------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV-NSGSITIDGQDIRDVTQ 332 (497)
T ss_pred ceEEEEEEEeecc-------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC-cCceEEEcchhHHHhHH
Confidence 3588999999984 457899999999999999999999999999999999999876 499999999864 34
Q ss_pred hhhcccEEEEccCCCCCCCC------------cHHHHHHHc---CC-------ccccCCccc----cCChHHHHHHHHHH
Q psy13765 104 NAFRRVSCYIQQDDRLQPLL------------TIENVMSLL---GL-------DESQNTRSS----QLSGGQKKRLSIAL 157 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~l------------tv~~~l~~~---gl-------~~~~~~~~~----~lSgGqrqRv~ia~ 157 (606)
+.+|+.||.||||..|+.+. |-+|+.... .+ .+-.++.++ .|||||||||+||
T Consensus 333 ~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaia- 411 (497)
T COG5265 333 QSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIA- 411 (497)
T ss_pred HHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHH-
Confidence 67899999999999887642 223333222 11 112223332 3566666666555
Q ss_pred HHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q psy13765 158 ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT 237 (606)
Q Consensus 158 ~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~ 237 (606)
|+++++|+||++||.||.||..+.+++...|++++ .|+|.+++.|..+.
T Consensus 412 -----------------------------r~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst- 460 (497)
T COG5265 412 -----------------------------RTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST- 460 (497)
T ss_pred -----------------------------HHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-
Confidence 55555599999999999999999999999999987 58999999999885
Q ss_pred HHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 238 LFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 238 i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
+ --+|+|++|++|++++.|++++++.
T Consensus 461 i-~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 461 I-IDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred c-cCCceEEEeeCCEEEecCcHHHHHH
Confidence 4 4699999999999999999999876
No 350
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=5.4e-32 Score=251.37 Aligned_cols=215 Identities=21% Similarity=0.384 Sum_probs=150.0
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc---cCC--
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---SRN-- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~---~~~-- 102 (606)
-++++++++.| +....-+||||++.|||+++|+|.|||||||||+||+++..| ..|+|.+.-+ +.+
T Consensus 6 LL~V~~lsk~Y--------g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p-~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 6 LLSVSGLSKLY--------GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP-DAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred ceeehhhhhhh--------CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCC-CCCeEEEEcCCCCchhHh
Confidence 58889999886 445578999999999999999999999999999999999887 5999998753 211
Q ss_pred ---hhh----hcccEEEEccCCCCCCCCcH------HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cc
Q psy13765 103 ---INA----FRRVSCYIQQDDRLQPLLTI------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MF 167 (606)
Q Consensus 103 ---~~~----~~~~~~yv~Q~~~l~~~ltv------~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~ 167 (606)
..+ .|..-|+|.|+|.-=-.++| .|-+...|-.|+-+ + | +-|...+.+-.+ .-
T Consensus 77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~-----i----R---~~a~~WL~~VEI~~~R 144 (258)
T COG4107 77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGN-----I----R---AEAQDWLEEVEIDLDR 144 (258)
T ss_pred hhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhh-----H----H---HHHHHHHHhcccCccc
Confidence 111 23457999999753222222 22222222222111 0 0 001111111111 12
Q ss_pred cCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceee
Q psy13765 168 LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVY 246 (606)
Q Consensus 168 ~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~ 246 (606)
.|+.++..|||++||+.|||-|.+.|+++|+||||.|||..-+..++++++.|..+ |.+++++|||.. .+.-++||.+
T Consensus 145 iDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla~rlm 223 (258)
T COG4107 145 IDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLADRLM 223 (258)
T ss_pred ccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhhhcce
Confidence 23333444455555555555555559999999999999999999999999999876 999999999976 4556899999
Q ss_pred eecCCcEEEEcChhHHHH
Q psy13765 247 LLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 247 ~L~~G~~~~~G~~~~~~~ 264 (606)
+|++|++++.|-++.+++
T Consensus 224 vmk~g~vve~GLTDrvLD 241 (258)
T COG4107 224 VMKQGQVVESGLTDRVLD 241 (258)
T ss_pred eecCCCEecccccccccc
Confidence 999999999999887753
No 351
>PLN03232 ABC transporter C family member; Provisional
Probab=99.98 E-value=1.4e-31 Score=329.92 Aligned_cols=208 Identities=22% Similarity=0.338 Sum_probs=160.0
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR 107 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~ 107 (606)
.|+++|++|+|+.+ .++++|+|+|+++++||.++|+||||||||||+++|.|..++ .+|.+. .++
T Consensus 614 ~I~~~~vsF~y~~~-----~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-~~G~i~---------~~~ 678 (1495)
T PLN03232 614 AISIKNGYFSWDSK-----TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH-AETSSV---------VIR 678 (1495)
T ss_pred cEEEEeeEEEcCCC-----CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc-cCCCEE---------Eec
Confidence 69999999998531 235799999999999999999999999999999999999876 467553 346
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcC----Cc--ccccCCCCCCCCchhhh
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN----PR--VMFLDEPTTSNPNDQKK 181 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~----~~--~~~~de~~~~~s~g~~k 181 (606)
+.++||+|++.++.. |+.|.+.. |- ..+-.+-+++.-+.+|..+ |+ --..+|....|||||||
T Consensus 679 ~~Iayv~Q~p~Lf~g-TIreNI~f-g~---------~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 747 (1495)
T PLN03232 679 GSVAYVPQVSWIFNA-TVRENILF-GS---------DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQ 747 (1495)
T ss_pred CcEEEEcCccccccc-cHHHHhhc-CC---------ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHH
Confidence 789999999999875 66544432 21 1122233333333333221 11 12334556678888888
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL-LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~-l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
|++||||+.++|+|++||||||+||+.++..+++. ++.. .+|+|+|++||+++. .+.+|+|++|++|++++.|+.+
T Consensus 748 RIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~--l~~aD~Ii~L~~G~i~~~Gt~~ 824 (1495)
T PLN03232 748 RVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHF--LPLMDRIILVSEGMIKEEGTFA 824 (1495)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhh--HHhCCEEEEEeCCEEEEecCHH
Confidence 88899999999999999999999999999988765 5443 358999999999863 5789999999999999999999
Q ss_pred HHHH
Q psy13765 261 QLVN 264 (606)
Q Consensus 261 ~~~~ 264 (606)
++.+
T Consensus 825 eL~~ 828 (1495)
T PLN03232 825 ELSK 828 (1495)
T ss_pred HHHh
Confidence 8864
No 352
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=2.8e-31 Score=260.94 Aligned_cols=209 Identities=20% Similarity=0.285 Sum_probs=168.3
Q ss_pred eEEEEEeeEEEEecCC----c-----------c-cccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCC
Q psy13765 27 IEIKFKDLTYTVSTGL----G-----------F-KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGV 90 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~----~-----------~-~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~ 90 (606)
+.|+++||++.++... . . ......+|+||||++++||.++|+|+||||||||||+|+|.++| .
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~P-t 80 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKP-T 80 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCC-C
Confidence 4688999999886431 0 1 12345799999999999999999999999999999999999887 5
Q ss_pred ccEEEECCccCChhhhcccEEEEccCCC--------CCCCCc-------HHHHHHHcCCccccCCccccCChHHHHHHHH
Q psy13765 91 TGQILTNGHSRNINAFRRVSCYIQQDDR--------LQPLLT-------IENVMSLLGLDESQNTRSSQLSGGQKKRLSI 155 (606)
Q Consensus 91 ~G~I~~~G~~~~~~~~~~~~~yv~Q~~~--------l~~~lt-------v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~i 155 (606)
+|+|.++|+....-+ -..|+-||-.. ++..+| ++++++..+|.+..|.+++++|.||+-|++.
T Consensus 81 ~G~v~v~G~v~~li~--lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaF 158 (249)
T COG1134 81 SGKVKVTGKVAPLIE--LGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAF 158 (249)
T ss_pred CceEEEcceEehhhh--cccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHH
Confidence 999999997532211 12333222110 111222 2667777888888888888888888888887
Q ss_pred HHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 156 a~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
|.+...+ |+||++||-.+-.|+.-++...+.++++.++++|||+++||+.
T Consensus 159 sia~~~~------------------------------pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~ 208 (249)
T COG1134 159 SVATHVE------------------------------PDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG 208 (249)
T ss_pred hhhhhcC------------------------------CCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 7766666 9999999999999999999999999999888899999999976
Q ss_pred hHHHhhcceeeeecCCcEEEEcChhHHHHHHHhC
Q psy13765 236 ATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSV 269 (606)
Q Consensus 236 ~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~~~ 269 (606)
.+.++|||+++|++|++.+.|+++++.++++..
T Consensus 209 -~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 209 -AIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred -HHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHh
Confidence 688999999999999999999999999887653
No 353
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.2e-31 Score=250.98 Aligned_cols=205 Identities=27% Similarity=0.438 Sum_probs=166.3
Q ss_pred EEEEEeeEEEEecCCc-ccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh-
Q psy13765 28 EIKFKDLTYTVSTGLG-FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA- 105 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~- 105 (606)
-++++|+++++....+ +++....+++.|||++++|+.+||+|.||||||||.|+|+|..+| .+|+|.+||++....+
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P-TsG~il~n~~~L~~~Dy 82 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-TSGEILINDHPLHFGDY 82 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC-CCceEEECCccccccch
Confidence 3678899988754322 334556799999999999999999999999999999999999887 6999999999764322
Q ss_pred --hcccEEEEccCCC--CCCCCcH-----------------------HHHHHHcCCc-cccCCccccCChHHHHHHHHHH
Q psy13765 106 --FRRVSCYIQQDDR--LQPLLTI-----------------------ENVMSLLGLD-ESQNTRSSQLSGGQKKRLSIAL 157 (606)
Q Consensus 106 --~~~~~~yv~Q~~~--l~~~ltv-----------------------~~~l~~~gl~-~~~~~~~~~lSgGqrqRv~ia~ 157 (606)
..+.|-.++||+. +.|.+.+ -+.++.+||- +.++-.+..||-||||||++||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence 2367999999985 5555544 3445555653 3455666677777777777666
Q ss_pred HHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCch
Q psy13765 158 ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSA 236 (606)
Q Consensus 158 ~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~ 236 (606)
||+.+ |+|++.||..++||...+.++.++.-+|.++ |.+-|.++.+..
T Consensus 163 ALIL~------------------------------P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG- 211 (267)
T COG4167 163 ALILR------------------------------PKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG- 211 (267)
T ss_pred HHhcC------------------------------CcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-
Confidence 65555 9999999999999999999999999999875 999999999976
Q ss_pred HHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 237 TLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 237 ~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
-+..++|+|++|++|++++.|.+.++..
T Consensus 212 ~iKHi~D~viVM~EG~vvE~G~t~~v~a 239 (267)
T COG4167 212 MIKHISDQVLVMHEGEVVERGSTADVLA 239 (267)
T ss_pred HhhhhcccEEEEecCceeecCChhhhhc
Confidence 5788999999999999999999998864
No 354
>PLN03130 ABC transporter C family member; Provisional
Probab=99.97 E-value=3e-31 Score=327.47 Aligned_cols=207 Identities=22% Similarity=0.350 Sum_probs=160.3
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc-cEEEECCccCChhhh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGHSRNINAF 106 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~-G~I~~~G~~~~~~~~ 106 (606)
.|+++|++|+|+.+ .++++|+|+|+++++||.++|+||||||||||+++|.|..++ .+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~~-----~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-~~GG~I~l---------- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSK-----AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP-RSDASVVI---------- 677 (1622)
T ss_pred ceEEEeeEEEccCC-----CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc-CCCceEEE----------
Confidence 69999999998531 235799999999999999999999999999999999999876 58 89974
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcC----Cc--ccccCCCCCCCCchhh
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN----PR--VMFLDEPTTSNPNDQK 180 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~----~~--~~~~de~~~~~s~g~~ 180 (606)
++.++||+|++.++.. |+.|.+.. |- ..+..+-+++.-+.+|..+ |+ --..+|...+||||||
T Consensus 678 ~~~Iayv~Q~p~Lfng-TIreNI~f-g~---------~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQK 746 (1622)
T PLN03130 678 RGTVAYVPQVSWIFNA-TVRDNILF-GS---------PFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQK 746 (1622)
T ss_pred cCeEEEEcCccccCCC-CHHHHHhC-CC---------cccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHH
Confidence 4579999999999875 66444332 21 1122233333333333221 11 1234556667888888
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK-LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
||++||||+.++|+|++||||||+||+.++..+.+ .++.+. +|+|+|++||+++ ..+.+|+|++|++|++++.|+.
T Consensus 747 QRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~ 823 (1622)
T PLN03130 747 QRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTY 823 (1622)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCH
Confidence 88888888888899999999999999999998864 565543 5899999999985 3578999999999999999999
Q ss_pred hHHHH
Q psy13765 260 DQLVN 264 (606)
Q Consensus 260 ~~~~~ 264 (606)
+++.+
T Consensus 824 ~eL~~ 828 (1622)
T PLN03130 824 EELSN 828 (1622)
T ss_pred HHHHh
Confidence 98864
No 355
>KOG0059|consensus
Probab=99.97 E-value=1.3e-31 Score=315.15 Aligned_cols=223 Identities=22% Similarity=0.352 Sum_probs=173.6
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--- 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--- 103 (606)
-.+..+|+++.++. ..+ +++++|+.|++||+.+++|||||||||++|+|+|..++ .+|++.++|.+...
T Consensus 563 ~~~~~~~L~k~y~~------~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~-t~G~a~i~g~~i~~~~~ 634 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG------KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP-TSGEALIKGHDITVSTD 634 (885)
T ss_pred ceEEEcceeeeecc------hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC-CcceEEEecCccccccc
Confidence 35677888887642 112 99999999999999999999999999999999999877 59999999987532
Q ss_pred -hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhh
Q psy13765 104 -NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKK 181 (606)
Q Consensus 104 -~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~k 181 (606)
.+.++.+||+||+|.+++.+|.+|.++..+. ++++...+-++. +..++..-++. .+|.+++.+|||+||
T Consensus 635 ~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~ar-------lrG~~~~di~~~--v~~ll~~~~L~~~~~~~~~~ySgG~kR 705 (885)
T KOG0059|consen 635 FQQVRKQLGYCPQFDALWEELTGREHLEFYAR-------LRGLPRSDIGSA--IEKLLRLVGLGPYANKQVRTYSGGNKR 705 (885)
T ss_pred hhhhhhhcccCCchhhhhhhccHHHHHHHHHH-------HcCCChhHHHHH--HHHHHHHcCChhhhccchhhCCCcchh
Confidence 3468899999999999999998776655431 122222221111 11122222221 445555556666666
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~ 261 (606)
|+++|.||+.+|++++|||||+|+||.+++.+.+++++++++|+.||+|||..+ +...+|||+.+|.+|++...|++++
T Consensus 706 kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~G~l~ciGs~q~ 784 (885)
T KOG0059|consen 706 RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVIGQLRCIGSPQE 784 (885)
T ss_pred hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeecCeeEEecChHH
Confidence 666666666669999999999999999999999999999998889999999976 6889999999999999999999999
Q ss_pred HHHHHH
Q psy13765 262 LVNYLS 267 (606)
Q Consensus 262 ~~~~f~ 267 (606)
+...|.
T Consensus 785 LKsrfG 790 (885)
T KOG0059|consen 785 LKSRYG 790 (885)
T ss_pred HHhhcC
Confidence 998764
No 356
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.97 E-value=6.5e-31 Score=324.42 Aligned_cols=207 Identities=23% Similarity=0.347 Sum_probs=165.8
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR 107 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~ 107 (606)
.++++|+++.++. ..+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 636 ~i~~~~~~~~~~~------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~-~~G~i~~~g--------- 699 (1522)
T TIGR00957 636 SITVHNATFTWAR------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-VEGHVHMKG--------- 699 (1522)
T ss_pred cEEEEEeEEEcCC------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc-CCcEEEECC---------
Confidence 6999999999742 235799999999999999999999999999999999999876 599999987
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhc----CCc--ccccCCCCCCCCchhhh
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN----NPR--VMFLDEPTTSNPNDQKK 181 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~----~~~--~~~~de~~~~~s~g~~k 181 (606)
.++||+|++.+++ .|+.+.+.. |.. ....+.+++.-+.++.. .|+ --..+|....|||||||
T Consensus 700 -~i~yv~Q~~~l~~-~Ti~eNI~~-g~~---------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkq 767 (1522)
T TIGR00957 700 -SVAYVPQQAWIQN-DSLRENILF-GKA---------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ 767 (1522)
T ss_pred -EEEEEcCCccccC-CcHHHHhhc-CCc---------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHH
Confidence 4899999998875 577665542 321 11122233333333322 121 12456778889999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS--QQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~--~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
|++||||++++|++++||||||+||+.++..+.+.+.+.. .+|+|+|++||+++. + ..+|++++|++|+++..|++
T Consensus 768 RiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~-l-~~~D~ii~l~~G~i~~~g~~ 845 (1522)
T TIGR00957 768 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY-L-PQVDVIIVMSGGKISEMGSY 845 (1522)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh-h-hhCCEEEEecCCeEEeeCCH
Confidence 9999999999999999999999999999999999987542 358999999999864 4 56999999999999999999
Q ss_pred hHHHH
Q psy13765 260 DQLVN 264 (606)
Q Consensus 260 ~~~~~ 264 (606)
+++.+
T Consensus 846 ~~l~~ 850 (1522)
T TIGR00957 846 QELLQ 850 (1522)
T ss_pred HHHHh
Confidence 88764
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=1.1e-31 Score=302.98 Aligned_cols=181 Identities=21% Similarity=0.304 Sum_probs=130.3
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEE-----------ECCccCCh--hh---hcccEEE
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQIL-----------TNGHSRNI--NA---FRRVSCY 112 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~-----------~~G~~~~~--~~---~~~~~~y 112 (606)
+.+|++++ .+++||+++|+||||||||||||+|+|..+| .+|+|. ++|++... .. .+..+++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p-~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 164 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIP-NLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH 164 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccC-CCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence 46999999 9999999999999999999999999999877 489997 88876532 11 1233566
Q ss_pred EccCCCCCCCC---cHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHHHHHHh
Q psy13765 113 IQQDDRLQPLL---TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLSIALE 188 (606)
Q Consensus 113 v~Q~~~l~~~l---tv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl~IA~a 188 (606)
.+|.....|.+ ||.+.+... -++.++. +++..-++ ..+|.+...|||||||||+||+|
T Consensus 165 ~~q~~~~~p~~~~~tv~e~l~~~---------------~~~~~~~---~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~a 226 (590)
T PRK13409 165 KPQYVDLIPKVFKGKVRELLKKV---------------DERGKLD---EVVERLGLENILDRDISELSGGELQRVAIAAA 226 (590)
T ss_pred cccchhhhhhhhcchHHHHHHhh---------------hHHHHHH---HHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 66654443322 665443210 0122221 11111111 12455555555555555556666
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765 189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGG 251 (606)
Q Consensus 189 L~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 251 (606)
|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|+++ .+..++|++++|.+|
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 6666999999999999999999999999999988 999999999987 577899999999763
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=2.2e-30 Score=286.25 Aligned_cols=211 Identities=25% Similarity=0.362 Sum_probs=158.7
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~ 106 (606)
..|+++|+++.+ +.+.+++|+|+++.+|+.+||+|+||||||||||+|+|...+ .+|+|...+.
T Consensus 2 ~~i~~~~ls~~~--------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~-~~G~i~~~~~------- 65 (530)
T COG0488 2 SMITLENLSLAY--------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP-DSGEVTRPKG------- 65 (530)
T ss_pred ceEEEeeeEEee--------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC-CCCeEeecCC-------
Confidence 368899999987 568899999999999999999999999999999999999876 5899987541
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHH-c-------------C--CccccCCccccCChHH--------HHHHHHHHHHhcC
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSL-L-------------G--LDESQNTRSSQLSGGQ--------KKRLSIALELINN 162 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~-~-------------g--l~~~~~~~~~~lSgGq--------rqRv~ia~~L~~~ 162 (606)
-.++|++|++...+..||.+.+.. . . +.+........+..-+ ..|+..+..=+.-
T Consensus 66 -~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~ 144 (530)
T COG0488 66 -LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGF 144 (530)
T ss_pred -ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCC
Confidence 358999999999998887332211 0 0 0000000111111000 1222222222222
Q ss_pred CcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q psy13765 163 PRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF 242 (606)
Q Consensus 163 ~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 242 (606)
++. |.|.+.||||||+||.+|+||..+|++|+|||||++||..+...+-+.|++. +| |+|+|||| +..+-+.|
T Consensus 145 ~~~---~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~ 217 (530)
T COG0488 145 PDE---DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVA 217 (530)
T ss_pred Ccc---cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHh
Confidence 222 7899999999999999999999999999999999999999999999998743 46 99999999 55788999
Q ss_pred ceeeeecCCcE-EEEcChhH
Q psy13765 243 DQVYLLSGGQC-LYQGATDQ 261 (606)
Q Consensus 243 D~v~~L~~G~~-~~~G~~~~ 261 (606)
++|+-++.|++ .|.|..+.
T Consensus 218 t~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 218 THILELDRGKLTPYKGNYSS 237 (530)
T ss_pred hheEEecCCceeEecCCHHH
Confidence 99999999987 46676544
No 359
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1e-30 Score=300.39 Aligned_cols=214 Identities=19% Similarity=0.266 Sum_probs=145.3
Q ss_pred CceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCccEEEECCccC-
Q psy13765 25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--NGVTGQILTNGHSR- 101 (606)
Q Consensus 25 ~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~~~~G~I~~~G~~~- 101 (606)
..-.|+++|++++| +++.+|+|+|++|++|+.+||+|||||||||||++|+|... .+.+|+|.+.++..
T Consensus 174 ~~~~I~i~nls~~y--------~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~ 245 (718)
T PLN03073 174 AIKDIHMENFSISV--------GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVV 245 (718)
T ss_pred CceeEEEceEEEEe--------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCC
Confidence 34569999999997 23569999999999999999999999999999999999641 12468887644321
Q ss_pred ----Ch------------hhhcccEEEEccCCCCCCC-Cc-------------------HHHHHHHcCCccccCCccccC
Q psy13765 102 ----NI------------NAFRRVSCYIQQDDRLQPL-LT-------------------IENVMSLLGLDESQNTRSSQL 145 (606)
Q Consensus 102 ----~~------------~~~~~~~~yv~Q~~~l~~~-lt-------------------v~~~l~~~gl~~~~~~~~~~l 145 (606)
+. ...++.+++++|++.+... .+ ++++++.+++.+..+
T Consensus 246 g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~------ 319 (718)
T PLN03073 246 GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYT------ 319 (718)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcch------
Confidence 11 0012335666665433211 00 011111111110000
Q ss_pred ChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy13765 146 SGGQKKRLSIALELINNPRV--MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ 223 (606)
Q Consensus 146 SgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~ 223 (606)
-..|+. +++..-.+ -.++.++..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++
T Consensus 320 ---~~~r~~---~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--- 390 (718)
T PLN03073 320 ---AEARAA---SILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--- 390 (718)
T ss_pred ---HHHHHH---HHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---
Confidence 001111 12222111 1245566777777777777888888889999999999999999999999999876
Q ss_pred CCEEEEEecCCchHHHhhcceeeeecCCcEE-EEcChhHH
Q psy13765 224 GRTIICTIHQPSATLFQMFDQVYLLSGGQCL-YQGATDQL 262 (606)
Q Consensus 224 g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~-~~G~~~~~ 262 (606)
+.|||+++|+.. .+...||++++|++|++. |.|+.++.
T Consensus 391 ~~tviivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 391 PKTFIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 689999999965 577889999999999996 77876543
No 360
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=236.75 Aligned_cols=190 Identities=21% Similarity=0.344 Sum_probs=145.3
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCccEEEECCccCCh-h
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTNGHSRNI-N 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~~~G~I~~~G~~~~~-~ 104 (606)
.+.++||+... ++..+|.++|++|.+||++.||||||||||||+..+.|.+.+ ..+|++.+|++..+. .
T Consensus 2 ~l~l~nvsl~l--------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP 73 (213)
T COG4136 2 MLCLKNVSLRL--------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73 (213)
T ss_pred ceeeeeeeecC--------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc
Confidence 46788998654 456799999999999999999999999999999999998765 368999999987653 4
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHH
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl 183 (606)
..+|++|.++||+.+||.++|.+.+-. ..+..+-|-+|||.+=| -+.+..+- ..|.-+..+|||||-|+
T Consensus 74 a~qRq~GiLFQD~lLFphlsVg~Nl~f--------Alp~~~KG~aRr~~a~a--AL~~~gL~g~f~~dP~tlSGGQrARv 143 (213)
T COG4136 74 AAQRQIGILFQDALLFPHLSVGQNLLF--------ALPATLKGNARRNAANA--ALERSGLDGAFHQDPATLSGGQRARV 143 (213)
T ss_pred hhhhheeeeecccccccccccccceEE--------ecCcccccHHHHhhHHH--HHHHhccchhhhcChhhcCcchHHHH
Confidence 567899999999999999998543211 12334555556555422 11111111 34445566777777777
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEecCCc
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTIICTIHQPS 235 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~-~l~~~g~tii~~~H~~~ 235 (606)
++-|+|+.+|+.++||||+|.||..-+.+..+.+- ++...|..+|.+|||..
T Consensus 144 aL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 144 ALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 78888888899999999999999999999988765 44556999999999965
No 361
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.8e-31 Score=246.66 Aligned_cols=170 Identities=24% Similarity=0.424 Sum_probs=137.2
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--NA 105 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--~~ 105 (606)
.++.+||++. +++..++.++||++.+||.+-|.|||||||||||++|+|+..| .+|+|.++|.+.+. +.
T Consensus 2 ~L~a~~L~~~--------R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p-~~G~v~~~~~~i~~~~~~ 72 (209)
T COG4133 2 MLEAENLSCE--------RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP-DAGEVYWQGEPIQNVRES 72 (209)
T ss_pred cchhhhhhhc--------cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCC-CCCeEEecCCCCccchhh
Confidence 3566777765 4677899999999999999999999999999999999999887 59999999987643 33
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHH-------------------HcCCccccCCccccCChHHHHHHHHHHHHhcCCccc
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMS-------------------LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM 166 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~-------------------~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~ 166 (606)
+++.+-|+-.++.+-+.+|+.|.+. .+||....|.++++||-||||||+
T Consensus 73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvA------------ 140 (209)
T COG4133 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVA------------ 140 (209)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHH------------
Confidence 5677888888888888888755444 445555555555555555555555
Q ss_pred ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765 167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSA 236 (606)
Q Consensus 167 ~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 236 (606)
|||-.++.+++.||||||++||......+-.++..-+++|-.||.+||||..
T Consensus 141 ------------------lArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 141 ------------------LARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred ------------------HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 5555555599999999999999999999999999888889999999999875
No 362
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=5.3e-30 Score=315.53 Aligned_cols=191 Identities=27% Similarity=0.377 Sum_probs=153.6
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHH
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENV 128 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~ 128 (606)
+++|+|+|++|++||+++|+|||||||||||++|+|..++ .+|+|.++| .++||+|++.+++. |+.+.
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~-~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP-SEGKIKHSG----------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECC----------EEEEEeCCCccCCc-cHHHH
Confidence 5699999999999999999999999999999999999876 599999988 38999999999885 88665
Q ss_pred HHHcCCccccCCccccCChHHHHHHHHHHHHhc----CCc--ccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCC
Q psy13765 129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELIN----NPR--VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202 (606)
Q Consensus 129 l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~----~~~--~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPT 202 (606)
+. +|... + .-..+++.-+.+|.. -|+ -...+|....||||||||++||||++.+|++++|||||
T Consensus 507 I~-~g~~~--~-------~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~ 576 (1490)
T TIGR01271 507 II-FGLSY--D-------EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 576 (1490)
T ss_pred HH-hcccc--c-------hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 54 33211 1 111122222223221 121 12346677899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 203 TGLDSQSCSQCIKL-LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 203 sgLD~~~~~~i~~~-l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
+|||+.++..+.+. ++++. +|+|+|++||++.. + ..||++++|++|+++..|+++++..
T Consensus 577 saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 577 THLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred ccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999974 66664 48999999999874 4 5699999999999999999988763
No 363
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=5.6e-30 Score=256.80 Aligned_cols=194 Identities=24% Similarity=0.373 Sum_probs=128.4
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHH-HHHhCCCCCCCccEEEEC-----------C--ccCChhhhc-ccEE
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-DVLSGYRSNGVTGQILTN-----------G--HSRNINAFR-RVSC 111 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL-~~L~g~~~~~~~G~I~~~-----------G--~~~~~~~~~-~~~~ 111 (606)
...++|+|||+++++||+++|+||||||||||+ ..+.. .|++.+. | ...+....+ ...+
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPA 79 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH------HHHHHHhhcccchhhhhhcccCccccccccCCCce
Confidence 346799999999999999999999999999995 44431 2222110 0 000001111 1233
Q ss_pred EEccCCC--CCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccCCCCCCCCchhhhHHHHHH
Q psy13765 112 YIQQDDR--LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLDEPTTSNPNDQKKRLSIAL 187 (606)
Q Consensus 112 yv~Q~~~--l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~de~~~~~s~g~~krl~IA~ 187 (606)
+..|++. +.+..++..+.+...+..... . ....+++.. ++..-++ ..+|.++..+|+|||||+.||+
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~-~~~~~~~~~----~l~~~~l~~~~~~~~~~~LSgG~~qrv~lar 150 (226)
T cd03270 80 IAIDQKTTSRNPRSTVGTVTEIYDYLRLLF----A-RVGIRERLG----FLVDVGLGYLTLSRSAPTLSGGEAQRIRLAT 150 (226)
T ss_pred EEecCCCCCCCCCccHHHHHHHHHHHHHHh----h-hhhHHHHHH----HHHHCCCCcccccCccCcCCHHHHHHHHHHH
Confidence 3344332 234445432211111100000 0 001122222 2222222 1367788889999999999999
Q ss_pred hhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee------cCCcEEEEc
Q psy13765 188 ELINNP--RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL------SGGQCLYQG 257 (606)
Q Consensus 188 aL~~~P--~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~~~~~G 257 (606)
||+.+| ++++|||||+|||+.++..+.+.|++++++|.|+|++||+++ .+ +.||++++| ++|+++++|
T Consensus 151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 999998 599999999999999999999999999888999999999986 34 689999999 899999876
No 364
>PTZ00243 ABC transporter; Provisional
Probab=99.96 E-value=2.2e-29 Score=310.52 Aligned_cols=194 Identities=22% Similarity=0.350 Sum_probs=149.0
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHH
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIE 126 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~ 126 (606)
+++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++ +.++||+|++.+++ .|+.
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~-~~G~i~~~----------~~i~yv~Q~~~l~~-~Tv~ 738 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI-SEGRVWAE----------RSIAYVPQQAWIMN-ATVR 738 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEEC----------CeEEEEeCCCccCC-CcHH
Confidence 346799999999999999999999999999999999999876 58999863 46999999998875 5886
Q ss_pred HHHHHcCCccccCCccccCChHHHHHHHHHHHH---h-cCC--cccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeC
Q psy13765 127 NVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL---I-NNP--RVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200 (606)
Q Consensus 127 ~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L---~-~~~--~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDE 200 (606)
+.+.... . .+. ...+++.-+..| + .-| .--..++....||||||||++|||||+.+|++++|||
T Consensus 739 enI~~~~-~--~~~-------~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDE 808 (1560)
T PTZ00243 739 GNILFFD-E--EDA-------ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDD 808 (1560)
T ss_pred HHHHcCC-h--hhH-------HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 6654321 0 000 000111111111 1 111 0113578888999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 201 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
||++||+.++..+++.+.....+|+|+|++||+++. + ..+|++++|++|++++.|+.+++.+
T Consensus 809 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~-~-~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 809 PLSALDAHVGERVVEECFLGALAGKTRVLATHQVHV-V-PRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred ccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999887543222358999999999863 4 7899999999999999999988753
No 365
>KOG0054|consensus
Probab=99.96 E-value=1.9e-28 Score=289.93 Aligned_cols=209 Identities=23% Similarity=0.302 Sum_probs=165.3
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
-.|+++|++.+|.+ +...+|||||++|+|||.+||+|..|||||||+++|-++..+ .+|+|.+||.++ ..
T Consensus 1137 G~I~f~~~~~RYrp------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~-~~G~I~IDgvdI~~igL 1209 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRP------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP-AEGEILIDGVDISKIGL 1209 (1381)
T ss_pred CeEEEEEeEEEeCC------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc-cCCeEEEcCeecccccH
Confidence 47999999999853 346799999999999999999999999999999999999876 589999999865 45
Q ss_pred hhhcccEEEEccCCCCCCCCc--------------HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccC
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLT--------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLD 169 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~lt--------------v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~d 169 (606)
.++|++++.+||||.+|...- +.+.++..+|.+...+.+++| -. -..
T Consensus 1210 ~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~L----d~---------------~v~ 1270 (1381)
T KOG0054|consen 1210 HDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGL----DS---------------EVS 1270 (1381)
T ss_pred HHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCC----Cc---------------eec
Confidence 789999999999999987521 245556555544333222211 00 122
Q ss_pred CCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765 170 EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 170 e~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
|-..+.|-||||.+.+||||+++.+||+|||+|++.|++|-..|.+.||+-= +++||+.+.|+.+. +. -+|||+||+
T Consensus 1271 egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-Vm-d~DrVlVld 1347 (1381)
T KOG0054|consen 1271 EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-VM-DSDRVLVLD 1347 (1381)
T ss_pred CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-hh-hcCeEEEee
Confidence 3344455555555556666666699999999999999999999999998643 37999999999985 54 499999999
Q ss_pred CCcEEEEcChhHHHH
Q psy13765 250 GGQCLYQGATDQLVN 264 (606)
Q Consensus 250 ~G~~~~~G~~~~~~~ 264 (606)
+|+++++|+|+++.+
T Consensus 1348 ~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1348 AGRVVEFDSPAELLS 1362 (1381)
T ss_pred CCeEeecCChHHHHh
Confidence 999999999999875
No 366
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=5.6e-29 Score=244.39 Aligned_cols=165 Identities=22% Similarity=0.294 Sum_probs=127.6
Q ss_pred eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--------CccEEEECCccCChhhhcccEEEEccCCCCCC---
Q psy13765 53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG--------VTGQILTNGHSRNINAFRRVSCYIQQDDRLQP--- 121 (606)
Q Consensus 53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~--------~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~--- 121 (606)
+++++++++| +++|+||||||||||+++|+|+..+. ..|++.++|+.......++.+++|+|++..+.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~ 92 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII 92 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence 7789999999 99999999999999999999875321 23568777775433334578999999987762
Q ss_pred -CCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeC
Q psy13765 122 -LLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200 (606)
Q Consensus 122 -~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDE 200 (606)
...++++++. .+..++.+.+||||||||+++|++++.. +..+|++++|||
T Consensus 93 ~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~--------------------------~~~~~~illlDE 143 (197)
T cd03278 93 SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIF--------------------------RVRPSPFCVLDE 143 (197)
T ss_pred ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHh--------------------------ccCCCCEEEEeC
Confidence 1123455544 4556677778888888888877766520 012379999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 201 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
||+|||+.....+.+.|+++++ +.|||++||++. .+ +.+|+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~~-~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG-TM-EAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-HH-hhcceEEEEEe
Confidence 9999999999999999999865 689999999976 34 78999999963
No 367
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=1.6e-29 Score=235.20 Aligned_cols=198 Identities=27% Similarity=0.491 Sum_probs=163.0
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~ 104 (606)
.+.++|+... +-|-.+|+++..||++-++|||||||||||-.++|+.+. +|+|.++|.+.. ..
T Consensus 3 l~qln~v~~~------------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~--sGsi~~~G~~l~~~~~~ 68 (248)
T COG4138 3 LMQLNDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--SGSIQFAGQPLEAWSAT 68 (248)
T ss_pred eeeecccccc------------ccccccccccccceEEEEECCCCccHHHHHHHHhCCCCC--CceEEECCcchhHHhHh
Confidence 4566777654 247889999999999999999999999999999999763 899999998764 35
Q ss_pred hhcccEEEEccCCCCCCCCc-------------H----HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhc-CCccc
Q psy13765 105 AFRRVSCYIQQDDRLQPLLT-------------I----ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN-NPRVM 166 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~lt-------------v----~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~-~~~~~ 166 (606)
++.+.-+|+.|+..-...+. + +++...+++++...+.+.+|||||-|||-+|...+. .|++
T Consensus 69 eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~- 147 (248)
T COG4138 69 ELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDA- 147 (248)
T ss_pred HHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCC-
Confidence 66677788888754322222 2 667778899999999999999999999987654433 2221
Q ss_pred ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee
Q psy13765 167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY 246 (606)
Q Consensus 167 ~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~ 246 (606)
+|. .++|++|||.++||......+-++|.+++++|.+||++.||.+.. .+.+|+++
T Consensus 148 ---NP~--------------------~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhT-LrhA~~~w 203 (248)
T COG4138 148 ---NPA--------------------GQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHT-LRHAHRAW 203 (248)
T ss_pred ---Ccc--------------------ceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhH-HHHHHHHH
Confidence 111 679999999999999999999999999999999999999999864 58999999
Q ss_pred eecCCcEEEEcChhHHHH
Q psy13765 247 LLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 247 ~L~~G~~~~~G~~~~~~~ 264 (606)
+|+.|++...|..+|++.
T Consensus 204 LL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 204 LLKRGKLLASGRREEVLT 221 (248)
T ss_pred HHhcCeEEeecchhhhcC
Confidence 999999999999998763
No 368
>KOG0054|consensus
Probab=99.95 E-value=1.6e-27 Score=282.15 Aligned_cols=210 Identities=24% Similarity=0.382 Sum_probs=153.8
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA 105 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~ 105 (606)
...++++|.+++++.. +..+.|+|||++|++|+.+||+||-|||||+||.+|.|-.+. .+|+|.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~-----~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~-~sG~v~v~gs------ 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE-----SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK-LSGSVAVNGS------ 583 (1381)
T ss_pred CceEEEeeeeEecCCC-----CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc-ccceEEEcCe------
Confidence 4569999999997532 344589999999999999999999999999999999998765 6999999984
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCC------cccccCCCCCCCCchh
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP------RVMFLDEPTTSNPNDQ 179 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~------~~~~~de~~~~~s~g~ 179 (606)
++||+|++-++...--||++-.-..++.+ =++|--|++|-.|- |.-...|...+|||||
T Consensus 584 ----iaYv~Q~pWI~ngTvreNILFG~~~d~~r-----------Y~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQ 648 (1381)
T KOG0054|consen 584 ----VAYVPQQPWIQNGTVRENILFGSPYDEER-----------YDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQ 648 (1381)
T ss_pred ----EEEeccccHhhCCcHHHhhhcCccccHHH-----------HHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhH
Confidence 89999999887753333433211111000 01122222222211 1112234444555555
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
|||+++|||+-+|++|.+||.|.|++|++....+.+-.-+-.-+++|+|++|||.+ ..+.+|.|++|++|++...|+.
T Consensus 649 KqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~~ad~Iivl~~G~I~~~Gty 726 (1381)
T KOG0054|consen 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLPHADQIIVLKDGKIVESGTY 726 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhhhCCEEEEecCCeEecccCH
Confidence 55555666666669999999999999999999988665544446899999999865 4688999999999999999999
Q ss_pred hHHHH
Q psy13765 260 DQLVN 264 (606)
Q Consensus 260 ~~~~~ 264 (606)
+|+.+
T Consensus 727 ~el~~ 731 (1381)
T KOG0054|consen 727 EELLK 731 (1381)
T ss_pred HHHHh
Confidence 99883
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=2.3e-28 Score=225.09 Aligned_cols=121 Identities=42% Similarity=0.712 Sum_probs=103.3
Q ss_pred ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hhhcccEEEEccCCCCCCCCcH---
Q psy13765 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NAFRRVSCYIQQDDRLQPLLTI--- 125 (606)
Q Consensus 52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~~~yv~Q~~~l~~~ltv--- 125 (606)
|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.+||.+... ...++.++|++|++.+++.+|+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~-~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP-DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE-SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999999876 59999999987653 5567889999999999999976
Q ss_pred ------HHHHHHcCCccccCCcc----ccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcE
Q psy13765 126 ------ENVMSLLGLDESQNTRS----SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRV 195 (606)
Q Consensus 126 ------~~~l~~~gl~~~~~~~~----~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~l 195 (606)
+++++.+++.+..++.+ ..||+|||||++||++|+.+ |++
T Consensus 80 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~------------------------------~~l 129 (137)
T PF00005_consen 80 ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKN------------------------------PKL 129 (137)
T ss_dssp HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTT------------------------------SSE
T ss_pred cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcC------------------------------CCE
Confidence 44666777766655555 78888888888876666666 999
Q ss_pred EEEeCCCC
Q psy13765 196 MFLDEPTT 203 (606)
Q Consensus 196 llLDEPTs 203 (606)
++|||||+
T Consensus 130 lllDEPt~ 137 (137)
T PF00005_consen 130 LLLDEPTN 137 (137)
T ss_dssp EEEESTTT
T ss_pred EEEeCCCC
Confidence 99999996
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=1.2e-27 Score=243.82 Aligned_cols=194 Identities=23% Similarity=0.345 Sum_probs=133.6
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHh-----C---CC--CCC----------CccEEEECCccCCh-----
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS-----G---YR--SNG----------VTGQILTNGHSRNI----- 103 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~-----g---~~--~~~----------~~G~I~~~G~~~~~----- 103 (606)
..-|+|||.+|+.|++++|.|+||||||||++.+. . .. .+. ..--|.++..++..
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45699999999999999999999999999998552 1 10 010 11124454433210
Q ss_pred --------hhhcc----------------cEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHH
Q psy13765 104 --------NAFRR----------------VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL 159 (606)
Q Consensus 104 --------~~~~~----------------~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L 159 (606)
+..|+ .+.|..++......+|+++.++.+.-. . +.++ +.++
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~----------~-~~~~----~~~~ 152 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI----------P-KIAR----KLQT 152 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh----------h-hHHH----HHHH
Confidence 00010 123333444444455655554433110 0 1111 2223
Q ss_pred hcCCccc--ccCCCCCCCCchhhhHHHHHHhhhcC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy13765 160 INNPRVM--FLDEPTTSNPNDQKKRLSIALELINN---PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP 234 (606)
Q Consensus 160 ~~~~~~~--~~de~~~~~s~g~~krl~IA~aL~~~---P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 234 (606)
+.+-.+- .++++...+|||||||+.||++|+.+ |++++|||||+|||+.+...+.+.|++++++|.|||+++|++
T Consensus 153 L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~ 232 (261)
T cd03271 153 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL 232 (261)
T ss_pred HHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3333332 36788888888888888888888886 799999999999999999999999999988899999999998
Q ss_pred chHHHhhcceeeee------cCCcEEEEcCh
Q psy13765 235 SATLFQMFDQVYLL------SGGQCLYQGAT 259 (606)
Q Consensus 235 ~~~i~~~~D~v~~L------~~G~~~~~G~~ 259 (606)
.. + +.+|+++.| ++|++++.|++
T Consensus 233 ~~-i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 DV-I-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HH-H-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 63 4 679999999 89999999974
No 371
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.4e-28 Score=226.41 Aligned_cols=208 Identities=21% Similarity=0.284 Sum_probs=157.5
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc--cC---
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH--SR--- 101 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~--~~--- 101 (606)
..+.++|+++++.-.. ...-.-++++|+||+++.||++++=|||||||||||++|-|.+.+ .+|+|.+.-. -.
T Consensus 3 ~~l~v~~~~KtFtlH~-q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~-d~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 3 TPLNVSNVSKTFTLHQ-QGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP-DEGQILVRHEGEWVDLV 80 (235)
T ss_pred ceeeeecchhheEeee-cCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCC-CCceEEEEeCcchhhhh
Confidence 3578899988764321 011234799999999999999999999999999999999998776 5999998643 11
Q ss_pred --Ch----hhhcccEEEEccCCCCCCCCcHHHHHHH----cCCccccCCccccCChHHHHHHHHHHHHhcCCcc--cccC
Q psy13765 102 --NI----NAFRRVSCYIQQDDRLQPLLTIENVMSL----LGLDESQNTRSSQLSGGQKKRLSIALELINNPRV--MFLD 169 (606)
Q Consensus 102 --~~----~~~~~~~~yv~Q~~~l~~~ltv~~~l~~----~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~--~~~d 169 (606)
.+ .-.++.+|||.|--...|....-++... .|... - .--.-|++|+++-++ -+++
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~-----------~--~a~~~a~~Ll~rLnlperLW~ 147 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPR-----------E--VARAKAADLLTRLNLPERLWS 147 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCH-----------H--HHHHHHHHHHHHcCCCHHHhc
Confidence 11 1224669999998777776553333222 22211 0 011235566666555 3677
Q ss_pred CCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765 170 EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 170 e~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
=+++..||||||||+|||.++.|-+||+|||||+.||..++..++++|++-+.+|..+|=+-|| ++.-...+||++-+.
T Consensus 148 LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~ 226 (235)
T COG4778 148 LAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVS 226 (235)
T ss_pred CCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeecc
Confidence 7888899999999999999999999999999999999999999999999998899999999999 434557899998886
Q ss_pred C
Q psy13765 250 G 250 (606)
Q Consensus 250 ~ 250 (606)
.
T Consensus 227 ~ 227 (235)
T COG4778 227 A 227 (235)
T ss_pred c
Confidence 3
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=6.1e-27 Score=258.97 Aligned_cols=206 Identities=24% Similarity=0.324 Sum_probs=153.9
Q ss_pred CceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChh
Q psy13765 25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN 104 (606)
Q Consensus 25 ~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~ 104 (606)
....++++|+++.|. +.+.+++++|+.|.+|+.+||+||||+|||||||+|+|...+ .+|+|.+.-
T Consensus 318 g~~vl~~~~~~~~y~-------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~-~~G~v~~g~------ 383 (530)
T COG0488 318 GKLVLEFENVSKGYD-------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP-LSGTVKVGE------ 383 (530)
T ss_pred CCeeEEEeccccccC-------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc-CCceEEeCC------
Confidence 356799999999973 236899999999999999999999999999999999998776 489998743
Q ss_pred hhcccEEEEccCC-CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765 105 AFRRVSCYIQQDD-RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 105 ~~~~~~~yv~Q~~-~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl 183 (606)
.-.+||..|+. .+.+..|+.+.+....-+.. -+.=|-.+++-+....+ ...|+..||||||.||
T Consensus 384 --~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~----------e~~~r~~L~~f~F~~~~---~~~~v~~LSGGEk~Rl 448 (530)
T COG0488 384 --TVKIGYFDQHRDELDPDKTVLEELSEGFPDGD----------EQEVRAYLGRFGFTGED---QEKPVGVLSGGEKARL 448 (530)
T ss_pred --ceEEEEEEehhhhcCccCcHHHHHHhhCcccc----------HHHHHHHHHHcCCChHH---HhCchhhcCHhHHHHH
Confidence 13589999987 44466677665544221100 11112222333322222 1456667777777777
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEE-cChhHH
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ-GATDQL 262 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~-G~~~~~ 262 (606)
.+|..++.+|.+|+|||||+.||..+...+.+.|.+. .-|||+||||.. .+-+.+++++.+.+ ++..+ |..++.
T Consensus 449 ~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred HHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 7888888889999999999999999999999998765 459999999965 68899999999998 55444 776654
Q ss_pred HH
Q psy13765 263 VN 264 (606)
Q Consensus 263 ~~ 264 (606)
.+
T Consensus 524 ~~ 525 (530)
T COG0488 524 LE 525 (530)
T ss_pred HH
Confidence 43
No 373
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.95 E-value=4.7e-27 Score=233.52 Aligned_cols=192 Identities=17% Similarity=0.139 Sum_probs=132.9
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEe-CCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC--ccCChh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFP-SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--HSRNIN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~-~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G--~~~~~~ 104 (606)
.|+++|+. +| .+. ++++|... +|++++|+||||||||||+++|++.+.....+....+. ......
T Consensus 5 ~i~l~nf~-~y--------~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~ 72 (213)
T cd03279 5 KLELKNFG-PF--------REE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPG 72 (213)
T ss_pred EEEEECCc-Cc--------CCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCC
Confidence 57777775 32 111 66666544 58999999999999999999999643211223333221 111222
Q ss_pred hhcccEEEEccCCCC------CCCCcHHHHHH-----HcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCC
Q psy13765 105 AFRRVSCYIQQDDRL------QPLLTIENVMS-----LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l------~~~ltv~~~l~-----~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~ 173 (606)
..+..+++++|++.. .+.++.++..+ ..++.+..++.+..+|+|||||+++|++|+.+|.+...++
T Consensus 73 ~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~--- 149 (213)
T cd03279 73 EDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGG--- 149 (213)
T ss_pred CccEEEEEEEEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccC---
Confidence 335668899988744 22344444332 2345566677777788888888887777765432111111
Q ss_pred CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
.+|++++|||||+|||+.+...+.+.|++++++|.|+|++||+++ .+...+|+++++++|.
T Consensus 150 -----------------~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 150 -----------------ARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred -----------------CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 138999999999999999999999999999877999999999986 5678899999999874
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1.5e-26 Score=234.04 Aligned_cols=184 Identities=21% Similarity=0.314 Sum_probs=124.7
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC----------------CCCCCcc--------EEEECCcc--
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY----------------RSNGVTG--------QILTNGHS-- 100 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~----------------~~~~~~G--------~I~~~G~~-- 100 (606)
+++.++++++ |++++|+||||||||||+++|++. ..++ +| +|.+++.+
T Consensus 13 ~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~-~~~~~~~~~v~i~~~~~~~~ 86 (243)
T cd03272 13 KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG-SGPSVMSAYVEIIFDNSDNR 86 (243)
T ss_pred ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC-CCCCCceEEEEEEEEcCCCc
Confidence 4566888886 789999999999999999999832 2221 34 55555531
Q ss_pred --C--ChhhhcccEEEEccCCCCCC-CCcHHHHHHH---cCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCC
Q psy13765 101 --R--NINAFRRVSCYIQQDDRLQP-LLTIENVMSL---LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172 (606)
Q Consensus 101 --~--~~~~~~~~~~yv~Q~~~l~~-~ltv~~~l~~---~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~ 172 (606)
. .....++.+++++|+..+++ ..|.+++... +|+..... ...+..|+. ..+ ..+ . -..+++.
T Consensus 87 ~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~--~~~~~qg~i--~~l-~~l---~--~~~~~~~ 156 (243)
T cd03272 87 FPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNP--YYIVPQGKI--NSL-TNM---K--QDEQQEM 156 (243)
T ss_pred cCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCC--cEEEEcCch--HHh-hhc---c--ccccccc
Confidence 1 11235677899999887776 3576665444 44432110 000111111 010 011 0 0235566
Q ss_pred CCCCchhhhHHHHHHhhh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765 173 TSNPNDQKKRLSIALELI----NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248 (606)
Q Consensus 173 ~~~s~g~~krl~IA~aL~----~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 248 (606)
..+|+|||||+.||+||+ .+|+++++||||+|||+.++..+.+.|+++++ +.|||+++|++ ++.+.||++++|
T Consensus 157 ~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l 233 (243)
T cd03272 157 QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGV 233 (243)
T ss_pred cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEE
Confidence 677777777777888875 35899999999999999999999999999865 78888888884 367999999999
Q ss_pred c
Q psy13765 249 S 249 (606)
Q Consensus 249 ~ 249 (606)
.
T Consensus 234 ~ 234 (243)
T cd03272 234 K 234 (243)
T ss_pred E
Confidence 5
No 375
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.2e-25 Score=243.51 Aligned_cols=217 Identities=20% Similarity=0.383 Sum_probs=171.2
Q ss_pred CceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-
Q psy13765 25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI- 103 (606)
Q Consensus 25 ~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~- 103 (606)
....++++|++.. ..++|+||++++||+++|-|-=|||+|-|+++|.|..+. .+|+|.+||++...
T Consensus 260 ~~~~l~v~~l~~~------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~-~~G~i~l~G~~v~~~ 326 (500)
T COG1129 260 GEPVLEVRNLSGG------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA-SSGEILLDGKPVRIR 326 (500)
T ss_pred CCcEEEEecCCCC------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC-CCceEEECCEEccCC
Confidence 3456888888742 258999999999999999999999999999999997655 59999999987542
Q ss_pred ---hhhcccEEEEccC---CCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCC
Q psy13765 104 ---NAFRRVSCYIQQD---DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSN 175 (606)
Q Consensus 104 ---~~~~~~~~yv~Q~---~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~ 175 (606)
+..+..++|||.| +-++..+++.+.+....+....... -++....+ ..+.....+-++- =.+.|...|
T Consensus 327 sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~--~i~~~~e~--~~~~~~~~~l~Ik~~s~~~~v~~L 402 (500)
T COG1129 327 SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRG--LIDRRKER--ALAERYIRRLRIKTPSPEQPIGTL 402 (500)
T ss_pred CHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhcccc--ccChHHHH--HHHHHHHHhcCcccCCccchhhcC
Confidence 3566789999976 4577777876655443333322211 23333222 2334444443332 347899999
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
|||.||+|.||+.|.++|++|||||||.|.|.-+..+|.+++++++++|++||++|.+.. ++..+||||++|++|+++.
T Consensus 403 SGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMREGRIVG 481 (500)
T ss_pred CchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999999999999999976 6889999999999999987
Q ss_pred EcCh
Q psy13765 256 QGAT 259 (606)
Q Consensus 256 ~G~~ 259 (606)
.=+.
T Consensus 482 e~~~ 485 (500)
T COG1129 482 ELDR 485 (500)
T ss_pred Eecc
Confidence 5443
No 376
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=9.9e-27 Score=239.73 Aligned_cols=192 Identities=24% Similarity=0.377 Sum_probs=151.5
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~ 103 (606)
-+|+++|+.|.|+.+ .-=+..||++|++||++-|+|.||||||||++.|+|+..| .+|+|.+||++++ .
T Consensus 321 ~~lelrnvrfay~~~-------~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P-qsG~I~ldg~pV~~e~l 392 (546)
T COG4615 321 KTLELRNVRFAYQDN-------AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP-QSGEILLDGKPVSAEQL 392 (546)
T ss_pred cceeeeeeeeccCcc-------cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC-CCCceeECCccCCCCCH
Confidence 369999999998542 2458899999999999999999999999999999999887 5999999999875 3
Q ss_pred hhhcccEEEEccCCCCCCCCc----------HHHHHHHcCCcccc---CCcc--ccCChHHHHHHHHHHHHhcCCccccc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLT----------IENVMSLLGLDESQ---NTRS--SQLSGGQKKRLSIALELINNPRVMFL 168 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~lt----------v~~~l~~~gl~~~~---~~~~--~~lSgGqrqRv~ia~~L~~~~~~~~~ 168 (606)
+++|+..+-|+-|-++|+.+- ++..++.+.+.+.. |... -.||.|||||++.-.||+
T Consensus 393 edYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~All-------- 464 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALL-------- 464 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHH--------
Confidence 678888888888888877542 34455555554432 2221 135666666666555544
Q ss_pred CCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEecCCchHHHhhcceeee
Q psy13765 169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTIICTIHQPSATLFQMFDQVYL 247 (606)
Q Consensus 169 de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~-~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 247 (606)
.+-+|+++||=.+.-||.-++.+.+.+- .++++|+||+.+|||.. -+..+||++.
T Consensus 465 ----------------------EeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~ 520 (546)
T COG4615 465 ----------------------EERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLE 520 (546)
T ss_pred ----------------------hhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHH
Confidence 4599999999999999999999887655 56678999999999944 5889999999
Q ss_pred ecCCcEEEEcC
Q psy13765 248 LSGGQCLYQGA 258 (606)
Q Consensus 248 L~~G~~~~~G~ 258 (606)
+++|++++.-+
T Consensus 521 ~~~G~~~e~tg 531 (546)
T COG4615 521 MRNGQLSELTG 531 (546)
T ss_pred HhcCceeeccc
Confidence 99999987653
No 377
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=1.2e-25 Score=222.09 Aligned_cols=170 Identities=22% Similarity=0.263 Sum_probs=115.8
Q ss_pred eeeEEEeCCeEEEEECCCCCCHHHHHHHHh----CCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCC------
Q psy13765 54 NLCGRFPSNQLIAIMGPSGAGKSSLLDVLS----GYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLL------ 123 (606)
Q Consensus 54 ~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~----g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~l------ 123 (606)
..++++.+| +++|+|||||||||||++|. |..++. .|.+..+.........+..+++++|++. ....
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~-~~~~~~~~~~i~~~~~~~~v~~~f~~~~-~~~~~v~r~~ 91 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN-SKGGAHDPKLIREGEVRAQVKLAFENAN-GKKYTITRSL 91 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc-cccccchHHHHhCCCCcEEEEEEEEeCC-CCEEEEEEEh
Confidence 345667788 99999999999999999995 876553 5555422222222334567999999873 2222
Q ss_pred cHHHHHHHc---CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeC
Q psy13765 124 TIENVMSLL---GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200 (606)
Q Consensus 124 tv~~~l~~~---gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDE 200 (606)
|+.+-+... ......++.++.||+||+||+.+|. |++||++++.+|+++++||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~------------------------rlala~al~~~p~illlDE 147 (204)
T cd03240 92 AILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLII------------------------RLALAETFGSNCGILALDE 147 (204)
T ss_pred hHhhceeeechHHHHHHHhcCccccCccHHHHHHHHH------------------------HHHHHHHhccCCCEEEEcC
Confidence 221111000 0011113334444444444443332 3578899999999999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeec-CCc
Q psy13765 201 PTTGLDSQSCS-QCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLS-GGQ 252 (606)
Q Consensus 201 PTsgLD~~~~~-~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~-~G~ 252 (606)
||++||+.++. .+.+.|++++++ |.|||+++|++. ....||+++.|. +|+
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~~~~ 200 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEKDGR 200 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEeeCCC
Confidence 99999999999 999999999876 899999999965 346899999995 453
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=5.4e-26 Score=225.74 Aligned_cols=153 Identities=18% Similarity=0.236 Sum_probs=107.0
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh-cccEEEEccCCCCCCCCcH
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF-RRVSCYIQQDDRLQPLLTI 125 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~l~~~ltv 125 (606)
+++.+++++++ ++++|+||||||||||+++|.-. +|.+. ... ++.+++++|+..+++.+|+
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-----------~G~~~--~~~~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-----------FGFRA--SKMRQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-----------hccCH--HHhhhhhHHHHhcCCCCCCCCce
Confidence 45678999987 89999999999999999999721 22211 111 2346666666666665554
Q ss_pred HHH--------------------------------HHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCC
Q psy13765 126 ENV--------------------------------MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173 (606)
Q Consensus 126 ~~~--------------------------------l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~ 173 (606)
.++ ++.+++.+..++++ .
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~------------------------------~ 126 (212)
T cd03274 77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI------------------------------S 126 (212)
T ss_pred EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch------------------------------h
Confidence 222 12223333333333 4
Q ss_pred CCCchhhhHHHHHHhhhc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765 174 SNPNDQKKRLSIALELIN----NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 174 ~~s~g~~krl~IA~aL~~----~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
.+|+|||||+.||+|++. +|+++++||||+|||+.+...+.+.++++++ +.|+|+++|++ ++.+.||++++|.
T Consensus 127 ~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~ 203 (212)
T cd03274 127 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIY 203 (212)
T ss_pred hcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEE
Confidence 455555555556666542 3899999999999999999999999999864 67888888995 4679999999996
Q ss_pred C
Q psy13765 250 G 250 (606)
Q Consensus 250 ~ 250 (606)
.
T Consensus 204 ~ 204 (212)
T cd03274 204 K 204 (212)
T ss_pred e
Confidence 4
No 379
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=5.7e-25 Score=223.95 Aligned_cols=181 Identities=18% Similarity=0.209 Sum_probs=120.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc-cC-Ch----hhhcccEEEEccCCC---------CCCCCcHH
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH-SR-NI----NAFRRVSCYIQQDDR---------LQPLLTIE 126 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~-~~-~~----~~~~~~~~yv~Q~~~---------l~~~ltv~ 126 (606)
..+++|+||||||||||+++|++.+.+...|++...|. +. .. ...+..+++++|++. +.|.+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 44999999999999999999999876533567877765 21 10 122457899999852 33455553
Q ss_pred HHHHHcCCccccCCccccCChHHHHHHHHHHHHhc-C---Cc--------------ccccCCCCCCCCchhhhHHHHHHh
Q psy13765 127 NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN-N---PR--------------VMFLDEPTTSNPNDQKKRLSIALE 188 (606)
Q Consensus 127 ~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~-~---~~--------------~~~~de~~~~~s~g~~krl~IA~a 188 (606)
+.+.. +.... ....+ ..-.++++.-+.+.+. . +. .-..+++...+|+|||||++||++
T Consensus 105 r~I~~-~~~~~--~~in~-~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~a 180 (251)
T cd03273 105 RQIVL-GGTNK--YLING-HRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLI 180 (251)
T ss_pred EEEEc-CCceE--EEECC-EEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHH
Confidence 32211 11100 00000 0001122221111111 0 00 013456778899999999999998
Q ss_pred hh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765 189 LI----NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 189 L~----~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
|+ .+|+++++||||+|||+.+...+.+.|++++ +|.|+|++||++ ++.+.||+++-+.
T Consensus 181 l~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 181 LALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 87 5789999999999999999999999999985 489999999994 4678899998875
No 380
>KOG0062|consensus
Probab=99.91 E-value=2.9e-24 Score=228.38 Aligned_cols=141 Identities=23% Similarity=0.372 Sum_probs=98.8
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCccEEEECCccCCh
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTNGHSRNI 103 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~~~G~I~~~G~~~~~ 103 (606)
...|...|.+..| +.|.+|++-++++..|..++|+|+||+||||||++|+.-.-. +++-++.=+..+...
T Consensus 78 ~~Di~~~~fdLa~--------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~ 149 (582)
T KOG0062|consen 78 SKDIHIDNFDLAY--------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQ 149 (582)
T ss_pred ccceeeeeeeeee--------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHh
Confidence 4567777887776 578899999999999999999999999999999999872100 122222211111000
Q ss_pred hhh---cccEEEEccCCCCCCCCcHHH----HHHHcCCccc-cCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCC
Q psy13765 104 NAF---RRVSCYIQQDDRLQPLLTIEN----VMSLLGLDES-QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174 (606)
Q Consensus 104 ~~~---~~~~~yv~Q~~~l~~~ltv~~----~l~~~gl~~~-~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~ 174 (606)
+.. -...-++.++..+...++.++ +|..+|..+. ....++++|||=|-|+++||||..+||+++|||||..
T Consensus 150 ~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNh 228 (582)
T KOG0062|consen 150 SVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNH 228 (582)
T ss_pred hhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCccc
Confidence 000 011234555555555445544 4556777653 4556788999999999999999999999999999988
No 381
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.91 E-value=1.1e-23 Score=246.15 Aligned_cols=96 Identities=25% Similarity=0.463 Sum_probs=88.8
Q ss_pred ccCCCCCCCCchhhhHHHHHHhhhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765 167 FLDEPTTSNPNDQKKRLSIALELINNP---RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD 243 (606)
Q Consensus 167 ~~de~~~~~s~g~~krl~IA~aL~~~P---~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 243 (606)
.++++...||||||||+.||++|+.+| ++++|||||+|||+.+...+++.|++++++|.|||+++|++.. + +.+|
T Consensus 823 ~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~-i-~~aD 900 (943)
T PRK00349 823 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV-I-KTAD 900 (943)
T ss_pred cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-HhCC
Confidence 468899999999999999999999999 9999999999999999999999999998889999999999863 4 6899
Q ss_pred eeeee------cCCcEEEEcChhHHHH
Q psy13765 244 QVYLL------SGGQCLYQGATDQLVN 264 (606)
Q Consensus 244 ~v~~L------~~G~~~~~G~~~~~~~ 264 (606)
+++.| ++|++++.|+++++..
T Consensus 901 ~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 901 WIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred EEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 99999 6899999999998754
No 382
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.91 E-value=1.5e-23 Score=231.15 Aligned_cols=175 Identities=28% Similarity=0.424 Sum_probs=135.8
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA 105 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~ 105 (606)
...|+++||+...| +++..|++.++.+++||-+.|.||||||||||+|+|+|+.+.+ +|+|..-.
T Consensus 390 ~~~i~~~nl~l~~p-------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g-~G~I~~P~------- 454 (604)
T COG4178 390 DHGITLENLSLRTP-------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG-SGRISMPA------- 454 (604)
T ss_pred cceeEEeeeeEECC-------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC-CCceecCC-------
Confidence 46799999999864 3358999999999999999999999999999999999998764 78876531
Q ss_pred hcccEEEEccCCCCCCC-----------------CcHHHHHHHcCCccccCCcc------ccCChHHHHHHHHHHHHhcC
Q psy13765 106 FRRVSCYIQQDDRLQPL-----------------LTIENVMSLLGLDESQNTRS------SQLSGGQKKRLSIALELINN 162 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~-----------------ltv~~~l~~~gl~~~~~~~~------~~lSgGqrqRv~ia~~L~~~ 162 (606)
...+-|+||.|.+... ..+.++|.++||.+..++.- ..||+|||||++.||.|+++
T Consensus 455 -~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~k 533 (604)
T COG4178 455 -DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHK 533 (604)
T ss_pred -CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcC
Confidence 1236677777765433 22466777888877554421 23777777777766665555
Q ss_pred CcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q psy13765 163 PRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF 242 (606)
Q Consensus 163 ~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 242 (606)
|++++|||.|++||+.+...+.+.+++-. .+.|||-+.|++. +..+.
T Consensus 534 ------------------------------P~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h 580 (604)
T COG4178 534 ------------------------------PKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFH 580 (604)
T ss_pred ------------------------------CCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHH
Confidence 99999999999999999999999997532 3799999999976 45777
Q ss_pred ceeeeec
Q psy13765 243 DQVYLLS 249 (606)
Q Consensus 243 D~v~~L~ 249 (606)
++.+-+.
T Consensus 581 ~~~l~l~ 587 (604)
T COG4178 581 SRQLELL 587 (604)
T ss_pred hhheeec
Confidence 7776664
No 383
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.90 E-value=3.8e-23 Score=251.09 Aligned_cols=95 Identities=32% Similarity=0.531 Sum_probs=88.5
Q ss_pred cCCCCCCCCchhhhHHHHHHhhh---cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcce
Q psy13765 168 LDEPTTSNPNDQKKRLSIALELI---NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQ 244 (606)
Q Consensus 168 ~de~~~~~s~g~~krl~IA~aL~---~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~ 244 (606)
+|++...||||||||+.||++|+ .+|++++|||||+|||+.+...++++|++++++|.|||+++|++. .+ +.+|+
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDr 880 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADY 880 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCE
Confidence 68999999999999999999998 699999999999999999999999999999988999999999986 45 89999
Q ss_pred eeeec------CCcEEEEcChhHHHH
Q psy13765 245 VYLLS------GGQCLYQGATDQLVN 264 (606)
Q Consensus 245 v~~L~------~G~~~~~G~~~~~~~ 264 (606)
+++|. +|+++..|+++++..
T Consensus 881 Vi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 881 VLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99996 789999999988753
No 384
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.90 E-value=1.7e-23 Score=216.82 Aligned_cols=172 Identities=26% Similarity=0.400 Sum_probs=145.1
Q ss_pred CCCCceEEEEEeeEEEEecCCccc---ccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC
Q psy13765 22 ETADRIEIKFKDLTYTVSTGLGFK---QEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG 98 (606)
Q Consensus 22 ~~~~~~~l~~~nl~~~~~~~~~~~---~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G 98 (606)
+...++-++.+||.+.++.+.++- .....++++||+++++||.++|+|.||||||||-.+|.++.++ +|+|.++|
T Consensus 270 ~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s--~G~I~F~G 347 (534)
T COG4172 270 PEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS--QGEIRFDG 347 (534)
T ss_pred CCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc--CceEEECC
Confidence 334567899999999998764432 2345789999999999999999999999999999999999875 69999999
Q ss_pred ccCCh------hhhcccEEEEccCC--CCCCCCcHH------------------------HHHHHcCCcc-ccCCccccC
Q psy13765 99 HSRNI------NAFRRVSCYIQQDD--RLQPLLTIE------------------------NVMSLLGLDE-SQNTRSSQL 145 (606)
Q Consensus 99 ~~~~~------~~~~~~~~yv~Q~~--~l~~~ltv~------------------------~~l~~~gl~~-~~~~~~~~l 145 (606)
++++. .-+|+.+-.||||| .+.|.+||. +.++..||+. ..++.++++
T Consensus 348 ~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEF 427 (534)
T COG4172 348 QDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEF 427 (534)
T ss_pred ccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCccc
Confidence 87642 33578899999998 477888873 4456678875 678889999
Q ss_pred ChHHHHHHHHHHHHhcCCcccccCCCCCCCCch-hhhHHHHHHhhhcCCcE
Q psy13765 146 SGGQKKRLSIALELINNPRVMFLDEPTTSNPND-QKKRLSIALELINNPRV 195 (606)
Q Consensus 146 SgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g-~~krl~IA~aL~~~P~l 195 (606)
|||||||++||||++.+|.++++||||+.|+.. |+|-+.+-+.|-.+-.+
T Consensus 428 SGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~L 478 (534)
T COG4172 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGL 478 (534)
T ss_pred CcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999986 88899999999877654
No 385
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.90 E-value=1.2e-22 Score=216.24 Aligned_cols=225 Identities=21% Similarity=0.334 Sum_probs=177.5
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC----
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---- 101 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---- 101 (606)
...++++||+..-. .+...+++|||++++||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|++.
T Consensus 255 ~~vL~V~~L~v~~~-------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~-~G~I~l~G~~v~~~~ 326 (501)
T COG3845 255 EVVLEVEDLSVKDR-------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA-SGRILLNGKDVLGRL 326 (501)
T ss_pred CeEEEEeeeEeecC-------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC-CceEEECCEeccccC
Confidence 56899999998632 2246899999999999999999999999999999999998664 69999999885
Q ss_pred Chhhh-cccEEEEccCCC---CCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--ccCCCCCCC
Q psy13765 102 NINAF-RRVSCYIQQDDR---LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSN 175 (606)
Q Consensus 102 ~~~~~-~~~~~yv~Q~~~---l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~de~~~~~ 175 (606)
+..+. +..++|||.|.+ +-+.+++.+.+-.-......-.+-+-+.-.+-+ ..|..++.+-|+. =-+.|..+|
T Consensus 327 ~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~--~~a~~li~~fdVr~~~~~~~a~~L 404 (501)
T COG3845 327 SPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIR--KFARELIEEFDVRAPSPDAPARSL 404 (501)
T ss_pred CHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHH--HHHHHHHHHcCccCCCCCcchhhc
Confidence 34443 456999999863 456667644322111110000011123323322 3567777776665 336678899
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
|||++||+-+||+|.++|++|+..+||.|||..+++.+.+.|.+.+++|+.|++++-+.+ +++.+||||.+|.+|+++.
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYEGRIVG 483 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeCCceec
Confidence 999999999999999999999999999999999999999999999999999999999987 6899999999999999998
Q ss_pred EcChhH
Q psy13765 256 QGATDQ 261 (606)
Q Consensus 256 ~G~~~~ 261 (606)
..++++
T Consensus 484 ~~~~~~ 489 (501)
T COG3845 484 IVPPEE 489 (501)
T ss_pred cccccc
Confidence 888765
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=5.4e-23 Score=240.04 Aligned_cols=94 Identities=27% Similarity=0.472 Sum_probs=86.8
Q ss_pred ccCCCCCCCCchhhhHHHHHHhhhc---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765 167 FLDEPTTSNPNDQKKRLSIALELIN---NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD 243 (606)
Q Consensus 167 ~~de~~~~~s~g~~krl~IA~aL~~---~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 243 (606)
.++++...||+||+||+.||++|+. +|++++|||||+|||+.+...+.+.|+++.++|.|||+++|++. .+ +.+|
T Consensus 821 ~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD 898 (924)
T TIGR00630 821 KLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTAD 898 (924)
T ss_pred hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCC
Confidence 4688999999999999999999997 59999999999999999999999999999888999999999986 34 6799
Q ss_pred eeeee------cCCcEEEEcChhHH
Q psy13765 244 QVYLL------SGGQCLYQGATDQL 262 (606)
Q Consensus 244 ~v~~L------~~G~~~~~G~~~~~ 262 (606)
+++.| ++|++++.|+++++
T Consensus 899 ~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 899 YIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999 79999999998875
No 387
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=3.6e-23 Score=197.83 Aligned_cols=227 Identities=20% Similarity=0.308 Sum_probs=161.1
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CccEEEECCcc---CC
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG---VTGQILTNGHS---RN 102 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~---~~G~I~~~G~~---~~ 102 (606)
+.++||+..+... .+...++++||+++++||+-+++|.||||||-..|+|+|..+.. ......+++.+ .+
T Consensus 4 LDIrnL~IE~~Ts----qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~ 79 (330)
T COG4170 4 LDIRNLTIEFKTS----QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred ccccceEEEEecC----CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCC
Confidence 5678888877653 35567999999999999999999999999999999999986532 12333444433 23
Q ss_pred hhhhc----ccEEEEccCCC--CCCCCcH-HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc----cccCCC
Q psy13765 103 INAFR----RVSCYIQQDDR--LQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV----MFLDEP 171 (606)
Q Consensus 103 ~~~~~----~~~~yv~Q~~~--l~~~ltv-~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~----~~~de~ 171 (606)
+++.| +.++.++|++. +.|.-++ .++++..---...++-=. --|=|||-+ .+|+++-.+ -++...
T Consensus 80 Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq--~F~WrKrrA--IeLLHrVGIKdHkDIM~SY 155 (330)
T COG4170 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQ--RFGWRKRRA--IELLHRVGIKDHKDIMRSY 155 (330)
T ss_pred hHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhh--hhchhHHHH--HHHHHHhccccHHHHHHhC
Confidence 34444 34678999875 2333222 222222111111111000 113344443 355555333 134444
Q ss_pred CCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 172 ~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
.-.+-.||-|+|.||.|++.+|++|+.||||+.+|+.++.++.++|.++.+ +|.||++++||.. .+.+.||++-+|.-
T Consensus 156 P~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYC 234 (330)
T COG4170 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYC 234 (330)
T ss_pred cchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEe
Confidence 455667888888888888888999999999999999999999999999987 5899999999987 48899999999999
Q ss_pred CcEEEEcChhHHHH
Q psy13765 251 GQCLYQGATDQLVN 264 (606)
Q Consensus 251 G~~~~~G~~~~~~~ 264 (606)
|+-++.++.+++++
T Consensus 235 GQ~~ESa~~e~l~~ 248 (330)
T COG4170 235 GQTVESAPSEELVT 248 (330)
T ss_pred cccccccchhHHhc
Confidence 99999999998875
No 388
>KOG0927|consensus
Probab=99.88 E-value=6.1e-23 Score=219.42 Aligned_cols=222 Identities=17% Similarity=0.220 Sum_probs=133.8
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CccEEEECCccCChhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG-VTGQILTNGHSRNINA 105 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~-~~G~I~~~G~~~~~~~ 105 (606)
-.+.++|+++++ .++.+++|+++++.+|+-++|+|||||||||+|++|+|...|- .+=.++.-.++..++.
T Consensus 74 ~dvk~~sls~s~--------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 74 RDVKIESLSLSF--------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE 145 (614)
T ss_pred ccceeeeeeecc--------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch
Confidence 468889999886 4578999999999999999999999999999999999987651 1112222222221111
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCc--c-ccCC------cc--ccCChHHHHHHHHHHHHhcCCcccccCCCCCC
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLD--E-SQNT------RS--SQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~--~-~~~~------~~--~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~ 174 (606)
.. .+-+|.+.... .....+..++.+.-. + ..++ +. .+.+.=+.|-..|..+|--.+. ..|..+.+
T Consensus 146 ~~-av~~v~~~~~~-e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~--m~~k~~~~ 221 (614)
T KOG0927|consen 146 KQ-AVQAVVMETDH-ERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSE--MQDKKVKD 221 (614)
T ss_pred HH-HHHHHhhhhHH-HHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHh--HHHHHhhc
Confidence 10 00011100000 000001111111000 0 0000 00 0011112222222222221111 23445556
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc-E
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ-C 253 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~-~ 253 (606)
+|||+|+|+++||+|..+|++|+|||||+|||..+...+-+.|.+..+ .++|+++|.-+ .+-..|.+|+-|.+++ +
T Consensus 222 ~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QD-fln~vCT~Ii~l~~kkl~ 298 (614)
T KOG0927|consen 222 LSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQD-FLNGVCTNIIHLDNKKLI 298 (614)
T ss_pred cCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchh-hhhhHhhhhheeccccee
Confidence 777777777777777777999999999999999999999888866532 28999999854 6889999999999999 5
Q ss_pred EEEcChhHHH
Q psy13765 254 LYQGATDQLV 263 (606)
Q Consensus 254 ~~~G~~~~~~ 263 (606)
.|.|+.++..
T Consensus 299 ~y~Gnydqy~ 308 (614)
T KOG0927|consen 299 YYEGNYDQYV 308 (614)
T ss_pred eecCCHHHHh
Confidence 6778876543
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.6e-22 Score=198.86 Aligned_cols=168 Identities=18% Similarity=0.131 Sum_probs=107.2
Q ss_pred ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEEC--Ccc----CChhhhcccEEEEccCCCCCCCCcH
Q psy13765 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN--GHS----RNINAFRRVSCYIQQDDRLQPLLTI 125 (606)
Q Consensus 52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~--G~~----~~~~~~~~~~~yv~Q~~~l~~~ltv 125 (606)
++++++++.+| +++|+||||||||||+.+|..... |+.... |.. .....-...+..++|+..+.+.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~----~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG----GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc----CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC---
Confidence 47788888888 889999999999999999974321 111111 110 0011113456777777554441
Q ss_pred HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhh----hcCCcEEEEeCC
Q psy13765 126 ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL----INNPRVMFLDEP 201 (606)
Q Consensus 126 ~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL----~~~P~lllLDEP 201 (606)
.+++=++++ +.+++... -..+++...+|+|||||++||+|+ +.+|++++||||
T Consensus 84 ------------------~~~~~~~~~---~~~~l~~~--~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP 140 (198)
T cd03276 84 ------------------PLCVLSQDM---ARSFLTSN--KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEF 140 (198)
T ss_pred ------------------cCCHHHHHH---HHHHhccc--cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCc
Confidence 011111111 12222221 123444455555555555555555 467999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC---CCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 202 TTGLDSQSCSQCIKLLKMISQQ---GRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 202 TsgLD~~~~~~i~~~l~~l~~~---g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
|+|||..+...+.+.|+++.++ +.||++++|++.. +.+ +|+|.+|..++
T Consensus 141 ~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~-~d~v~~~~~~~ 192 (198)
T cd03276 141 DVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LAS-SDDVKVFRMKD 192 (198)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-ccc-ccceeEEEecC
Confidence 9999999999999999998653 3689999999874 544 59999998654
No 390
>KOG0927|consensus
Probab=99.88 E-value=4.9e-23 Score=220.17 Aligned_cols=186 Identities=23% Similarity=0.359 Sum_probs=139.3
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA 105 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~ 105 (606)
+..+.++|++|.|+.+ ..++++++|-+..++.+|++||||+|||||||++.|...| ..|.|.-.-+.
T Consensus 387 ~pvi~~~nv~F~y~~~-------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p-~~G~vs~~~H~----- 453 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDN-------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP-TIGMVSRHSHN----- 453 (614)
T ss_pred CCeEEEeccccCCCCc-------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc-ccccccccccc-----
Confidence 4568899999987532 2699999999999999999999999999999999999887 58888654321
Q ss_pred hcccEEEEccCCCCCC--CCc-----------------HHHHHHHcCCc-cccCCccccCChHHHHHHHHHHHHhcCCcc
Q psy13765 106 FRRVSCYIQQDDRLQP--LLT-----------------IENVMSLLGLD-ESQNTRSSQLSGGQKKRLSIALELINNPRV 165 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~--~lt-----------------v~~~l~~~gl~-~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~ 165 (606)
++++-.|+....- ..+ +..++..+||. +..+.++++||+|||+||..|+.++..
T Consensus 454 ---~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kq--- 527 (614)
T KOG0927|consen 454 ---KLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQ--- 527 (614)
T ss_pred ---cchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcC---
Confidence 1222222211100 001 23456667777 445556677888888888776666666
Q ss_pred cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhccee
Q psy13765 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV 245 (606)
Q Consensus 166 ~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v 245 (606)
|.+|+|||||+|||..+...+.+.|.+. .-++|+++||.. .+-++++++
T Consensus 528 ---------------------------P~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi 576 (614)
T KOG0927|consen 528 ---------------------------PHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEI 576 (614)
T ss_pred ---------------------------CcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHh
Confidence 9999999999999999999998888654 358999999977 588999999
Q ss_pred eeecCCcE-EEEcChhH
Q psy13765 246 YLLSGGQC-LYQGATDQ 261 (606)
Q Consensus 246 ~~L~~G~~-~~~G~~~~ 261 (606)
++..+|.+ .+.|+...
T Consensus 577 ~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 577 WVCENGTVTKWDGDIEI 593 (614)
T ss_pred HhhccCceeecCccHHH
Confidence 99987765 56676543
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=2.6e-22 Score=203.96 Aligned_cols=178 Identities=15% Similarity=0.196 Sum_probs=111.5
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc-------C---ChhhhcccEEEEccCCCCC---------
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-------R---NINAFRRVSCYIQQDDRLQ--------- 120 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~-------~---~~~~~~~~~~yv~Q~~~l~--------- 120 (606)
.++ +++|+|||||||||||++|++...+ ..|++..++.. . +.....-.+.|..|++...
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~-~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~ 98 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGE-KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGG 98 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCC-CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECC
Confidence 344 9999999999999999999987653 24555443311 0 0001111233333332110
Q ss_pred ------C--CC---cHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhh
Q psy13765 121 ------P--LL---TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189 (606)
Q Consensus 121 ------~--~l---tv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL 189 (606)
. .. .++++++.+|++......+ +..|+-.++.- ..|+ --.+++...+|+|||||+.||+++
T Consensus 99 ~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~--i~Qg~v~~i~~-----~~p~-~~~~~~~~~LS~G~k~rl~la~al 170 (247)
T cd03275 99 SSSYRINGKVVSLKEYNEELEKINILVKARNFL--VFQGDVESIAS-----KNPP-GKRFRDMDNLSGGEKTMAALALLF 170 (247)
T ss_pred ceEEEECCEEecHHHHHHHHHHhCCCCCCCeEE--EECCchhhhhh-----ccCc-chhhhhHHHcCHHHHHHHHHHHHH
Confidence 0 00 1245666666643221111 11222211110 0010 011233456788888888888888
Q ss_pred hcC----CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765 190 INN----PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 190 ~~~----P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
+.+ |+++++||||+|||+.++..+.+.|++++++|.|||+++|+++ +.+.+|++++|.
T Consensus 171 ~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~--~~~~~d~i~~~~ 232 (247)
T cd03275 171 AIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEE--FFSKADALVGVY 232 (247)
T ss_pred HHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHH--HHhhCCeEEEEE
Confidence 764 8999999999999999999999999999877999999999953 568999999995
No 392
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.87 E-value=1e-21 Score=206.22 Aligned_cols=189 Identities=19% Similarity=0.247 Sum_probs=128.2
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA 105 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~ 105 (606)
...++|.++++++. ---|.==.++|..||+++++||||-||||+.++|+|...| .+|. .
T Consensus 340 ~~lv~y~~~~k~~g---------~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP-deg~----~------- 398 (591)
T COG1245 340 DTLVEYPDLKKTYG---------DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP-DEGS----E------- 398 (591)
T ss_pred ceeeecchheeecC---------ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccC-CCCC----C-------
Confidence 34567777777652 1234555678888999999999999999999999999887 4665 1
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhHHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~krl~ 184 (606)
..-.++|=||--.--...||++++....-....+ ..=+. +++..-++ -++|.+..+|||||.|||+
T Consensus 399 ~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~---------s~~~~----ei~~pl~l~~i~e~~v~~LSGGELQRva 465 (591)
T COG1245 399 EDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGS---------SYFKT----EIVKPLNLEDLLERPVDELSGGELQRVA 465 (591)
T ss_pred ccceEeecceeecCCCCCcHHHHHHHhhhhhccc---------chhHH----hhcCccchHHHHhcccccCCchhHHHHH
Confidence 1234677777654445667766654321110000 00000 11111111 1344455555555555555
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeec
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
||.||.+++++.+||||++-||++.+..+.+.|++...+ ++|.+++.||.- .+--++||+++.+
T Consensus 466 Iaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 466 IAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred HHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEeccee-hhhhhhceEEEEe
Confidence 666666679999999999999999999999999999874 899999999976 3566899999886
No 393
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.87 E-value=2.3e-23 Score=203.51 Aligned_cols=208 Identities=24% Similarity=0.417 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHhhcChhHH-HHHHHHHHHHHHHHHHhhcCCCCChHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy13765 333 NQLGVLLSRGLLKVKRDSTLT-HLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEM 411 (606)
Q Consensus 333 ~q~~~l~~R~~~~~~Rd~~~~-~~r~~~~i~~all~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er 411 (606)
+|++.+++|+++..+|||... ...++..++.++++|.+|.++++..++. ++.+++++.+....+.........+..|+
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999988444444 67788887777777666666657788999
Q ss_pred hhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhccccc
Q psy13765 412 SILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNV 491 (606)
Q Consensus 412 ~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~~~~ 491 (606)
..+.||+.++.|++.+|.+||.+.+++..++.++++.++.|++.|++.+ +++.+++.++++.+++.++|.+++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999887 77888888899999999999999999865
Q ss_pred -hhHHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHh
Q psy13765 492 -VNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIY 543 (606)
Q Consensus 492 -~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~ 543 (606)
..+..+.+++..+++++||.+.|.+.+|+|++|+.|+||++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5588899999999999999999999999999999999999999999998875
No 394
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=2.1e-21 Score=192.99 Aligned_cols=172 Identities=17% Similarity=0.208 Sum_probs=116.7
Q ss_pred ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC------------------CccEEE--ECCccCChhhhcccEE
Q psy13765 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG------------------VTGQIL--TNGHSRNINAFRRVSC 111 (606)
Q Consensus 52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~------------------~~G~I~--~~G~~~~~~~~~~~~~ 111 (606)
++++++++.+| +.+|+|||||||||||.+|.-..... .++.|. +++.... -.++...-
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~-~~~~n~~~ 91 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGN-IQVDNLCQ 91 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCc-cccCCceE
Confidence 35667777676 88999999999999999986532110 011111 1111100 12233344
Q ss_pred EEccCCC-CCCCCcHHHHHHHcCC-ccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhh
Q psy13765 112 YIQQDDR-LQPLLTIENVMSLLGL-DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189 (606)
Q Consensus 112 yv~Q~~~-l~~~ltv~~~l~~~gl-~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL 189 (606)
+++|+.. -+..++..+++..++- ....+..+++||+|||||+.++.+ +|+++
T Consensus 92 ~~~q~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~--------------------------la~~~ 145 (213)
T cd03277 92 FLPQDRVGEFAKLSPIELLVKFREGEQLQELDPHHQSGGERSVSTMLYL--------------------------LSLQE 145 (213)
T ss_pred EEchHHHHHHHhCChHhHheeeecCCCccccchhhccccHHHHHHHHHH--------------------------HHHHh
Confidence 6666543 2455667777654432 234456677899999988765543 34455
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEecCCchHHHhhcc--eeeeecCCc
Q psy13765 190 INNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-G-RTIICTIHQPSATLFQMFD--QVYLLSGGQ 252 (606)
Q Consensus 190 ~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g-~tii~~~H~~~~~i~~~~D--~v~~L~~G~ 252 (606)
+.+|+++++||||+|||+.++..+.+.+++++++ | .|+|++||+... ..+.+| ++++|.+|+
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 146 LTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKMTVLCVYNGP 211 (213)
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCceEEEEEecCc
Confidence 6679999999999999999999999999999876 5 589999999764 446676 678888886
No 395
>KOG2355|consensus
Probab=99.86 E-value=6.6e-21 Score=181.96 Aligned_cols=200 Identities=22% Similarity=0.358 Sum_probs=149.6
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh--
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-- 103 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-- 103 (606)
.-.|+++++.|+|+. ..+++-|+|++++.|....++|.||||||||||+|+|-.-.. .|.|.++|+..-.
T Consensus 11 ~~aievsgl~f~y~~-------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~-~~~v~VlgrsaFhDt 82 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKV-------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG-GGVVQVLGRSAFHDT 82 (291)
T ss_pred cceEEEeccEEeccc-------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc-CCeEEEcCcCccccc
Confidence 346899999999853 348999999999999999999999999999999999975433 5899999974211
Q ss_pred ------------hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccC--C-----------ccccCChHHHHHHHHHHH
Q psy13765 104 ------------NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN--T-----------RSSQLSGGQKKRLSIALE 158 (606)
Q Consensus 104 ------------~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~--~-----------~~~~lSgGqrqRv~ia~~ 158 (606)
.++.+.+++-- +--++...++++++...|-.+... + +.+.+|-|||+||.|+..
T Consensus 83 ~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMG 161 (291)
T KOG2355|consen 83 SLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMG 161 (291)
T ss_pred cccccCceeEecccccccccccc-cccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHh
Confidence 12233333222 333445667777776665433211 0 123355566655555554
Q ss_pred HhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchH
Q psy13765 159 LINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSAT 237 (606)
Q Consensus 159 L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~ 237 (606)
|++--++|+|||-|--||.-++.++++.+++-.+ +|.||+..||-.+.
T Consensus 162 ------------------------------LL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG- 210 (291)
T KOG2355|consen 162 ------------------------------LLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG- 210 (291)
T ss_pred ------------------------------cccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-
Confidence 4444899999999999999999999999998876 59999999998774
Q ss_pred HHhhcceeeeecCCcEEEEcChhHHHHH
Q psy13765 238 LFQMFDQVYLLSGGQCLYQGATDQLVNY 265 (606)
Q Consensus 238 i~~~~D~v~~L~~G~~~~~G~~~~~~~~ 265 (606)
+.....+++.+++|+++..-+.+++.++
T Consensus 211 Le~Wpthl~yi~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 211 LETWPTHLVYIKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred hhhcchhEEEecCCeeeeccccchhhhh
Confidence 7789999999999999987777766654
No 396
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.86 E-value=1.4e-21 Score=192.38 Aligned_cols=147 Identities=18% Similarity=0.188 Sum_probs=111.1
Q ss_pred cceeeeEEEeCC-eEEEEECCCCCCHHHHHHHHh--------CCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCC
Q psy13765 51 VLKNLCGRFPSN-QLIAIMGPSGAGKSSLLDVLS--------GYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQP 121 (606)
Q Consensus 51 iL~~vs~~i~~G-e~~aIiGpsGaGKSTLL~~L~--------g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~ 121 (606)
-..++|+++.+| ++++|.|||||||||||++|+ |..-+. .. ...++|..|.-.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~-~~--------------~~~~~~~~~~~~--- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA-AE--------------GSSLPVFENIFA--- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc-cc--------------cccCcCccEEEE---
Confidence 356789999999 589999999999999999998 432221 00 012334333321
Q ss_pred CCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC
Q psy13765 122 LLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201 (606)
Q Consensus 122 ~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP 201 (606)
.++.++..+...+.+|+||||++.+++++ .+ |+++++|||
T Consensus 78 ---------~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~------------------------------p~llllDEp 117 (200)
T cd03280 78 ---------DIGDEQSIEQSLSTFSSHMKNIARILQHA-DP------------------------------DSLVLLDEL 117 (200)
T ss_pred ---------ecCchhhhhcCcchHHHHHHHHHHHHHhC-CC------------------------------CcEEEEcCC
Confidence 22333344555677899999988866542 33 999999999
Q ss_pred CCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 202 TTGLDSQSCSQCI-KLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 202 TsgLD~~~~~~i~-~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|+|||+.+...+. ..++++++.|.|+|++||+. ++.+++|++..+++|++.+.+
T Consensus 118 ~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 118 GSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999999999996 57888887799999999983 467999999999999998874
No 397
>KOG0060|consensus
Probab=99.84 E-value=5e-20 Score=198.51 Aligned_cols=176 Identities=26% Similarity=0.387 Sum_probs=133.4
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~ 106 (606)
..|++++|+..-|.+ +..+++|+|++|++|+-+.|.||||||||+|+++|+|+.+. .+|++..-....+
T Consensus 432 n~i~~e~v~l~tPt~------g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~-~~G~l~k~~~~~~---- 500 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTN------GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS-TGGKLTKPTDGGP---- 500 (659)
T ss_pred ceEEeeeeeecCCCC------CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc-CCCeEEecccCCC----
Confidence 679999999986542 35688899999999999999999999999999999999875 5898876443211
Q ss_pred cccEEEEccCCCCCCCCc-----------------------HHHHHHHcCCccccCCcc-----------ccCChHHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLT-----------------------IENVMSLLGLDESQNTRS-----------SQLSGGQKKR 152 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~lt-----------------------v~~~l~~~gl~~~~~~~~-----------~~lSgGqrqR 152 (606)
+.+-||||.|.+.-. | +..+|+.++|.|...+-. ..||+||+||
T Consensus 501 -~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQR 578 (659)
T KOG0060|consen 501 -KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQR 578 (659)
T ss_pred -CceEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHH
Confidence 457899998865322 1 134455555555433211 1367777777
Q ss_pred HHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy13765 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH 232 (606)
Q Consensus 153 v~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H 232 (606)
++.||-+.++ |++-+|||-||++|......+.+.+++ .|.|.|-+.|
T Consensus 579 La~ARLfy~k------------------------------Pk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgH 625 (659)
T KOG0060|consen 579 LAFARLFYHK------------------------------PKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGH 625 (659)
T ss_pred HHHHHHHhcC------------------------------CceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEecc
Confidence 7655555555 999999999999999999888887764 4999999999
Q ss_pred CCchHHHhhcceeeeecC
Q psy13765 233 QPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 233 ~~~~~i~~~~D~v~~L~~ 250 (606)
..+ +.+.-|.++-|++
T Consensus 626 RkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 626 RKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHH--HHhhhhEEEEecC
Confidence 975 5677788888875
No 398
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.81 E-value=2e-19 Score=173.82 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=99.1
Q ss_pred eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC---C--CccEE-EECCccCChhhhcccEEEEccCCC-CCCCCcH
Q psy13765 53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN---G--VTGQI-LTNGHSRNINAFRRVSCYIQQDDR-LQPLLTI 125 (606)
Q Consensus 53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~---~--~~G~I-~~~G~~~~~~~~~~~~~yv~Q~~~-l~~~ltv 125 (606)
++......++.+.+|+||||||||++|.+|.-.... . ..... ..++. .....-...+...++++. ++|
T Consensus 13 ~~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~f~~~~~~~~---- 87 (178)
T cd03239 13 RDETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGG-VKAGINSASVEITFDKSYFLVL---- 87 (178)
T ss_pred CCCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccc-cCCCCceEEEEEEEECceEEec----
Confidence 333444444449999999999999999998542211 0 01111 11110 010111122333333331 111
Q ss_pred HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC
Q psy13765 126 ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205 (606)
Q Consensus 126 ~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL 205 (606)
+...+.+ +|+|||||+++|++++.. .+.+|+++++||||+||
T Consensus 88 ----------~~~~~~~--LS~Ge~~r~~Laral~~~--------------------------~~~~p~llilDEp~~~L 129 (178)
T cd03239 88 ----------QGKVEQI--LSGGEKSLSALALIFALQ--------------------------EIKPSPFYVLDEIDAAL 129 (178)
T ss_pred ----------CCcCccc--CCHHHHHHHHHHHHHHHh--------------------------cCCCCCEEEEECCCCCC
Confidence 1112223 899999999988877531 01349999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 206 DSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 206 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
|+..+..+.+.|++++++|.|+|+++|+++ ..+.+|+++.+.+
T Consensus 130 D~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 130 DPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 999999999999999877899999999975 3578999999964
No 399
>KOG0066|consensus
Probab=99.81 E-value=9.5e-20 Score=189.75 Aligned_cols=175 Identities=27% Similarity=0.391 Sum_probs=129.7
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA 105 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~ 105 (606)
+..+-++||+|.|+ +.++++++++|-|.=-..+||+||||.||||||++|.|-+.|. .|+..-|
T Consensus 584 PPvLGlH~VtFgy~-------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~-~GE~RKn-------- 647 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP-------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN-DGELRKN-------- 647 (807)
T ss_pred CCeeecccccccCC-------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC-cchhhcc--------
Confidence 45688899999874 5688999999999999999999999999999999999988773 6655432
Q ss_pred hcccEEEEccCC--CCCCCCcHHHH---------------HHHcCCccccCC-ccccCChHHHHHHHHHHHHhcCCcccc
Q psy13765 106 FRRVSCYIQQDD--RLQPLLTIENV---------------MSLLGLDESQNT-RSSQLSGGQKKRLSIALELINNPRVMF 167 (606)
Q Consensus 106 ~~~~~~yv~Q~~--~l~~~ltv~~~---------------l~~~gl~~~~~~-~~~~lSgGqrqRv~ia~~L~~~~~~~~ 167 (606)
.|-+||+..|.. .+...-|.-+. +-.+||...+++ .+..|||||+-||++|.--+..
T Consensus 648 hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~----- 722 (807)
T KOG0066|consen 648 HRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGG----- 722 (807)
T ss_pred ceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCC-----
Confidence 244577777653 23333333222 333566555554 4677899999888877554444
Q ss_pred cCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeee
Q psy13765 168 LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYL 247 (606)
Q Consensus 168 ~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 247 (606)
|+||||||||++||..+...+.+.|++. .-.||+++||-. .+.+.--.+++
T Consensus 723 -------------------------PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR-Li~eT~C~LwV 773 (807)
T KOG0066|consen 723 -------------------------PDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER-LIVETDCNLWV 773 (807)
T ss_pred -------------------------CCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc-eeeecCceEEE
Confidence 9999999999999999999999888765 347999999965 34444445666
Q ss_pred ecC
Q psy13765 248 LSG 250 (606)
Q Consensus 248 L~~ 250 (606)
+.+
T Consensus 774 vE~ 776 (807)
T KOG0066|consen 774 VEN 776 (807)
T ss_pred Ecc
Confidence 654
No 400
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.79 E-value=1.9e-19 Score=180.11 Aligned_cols=155 Identities=15% Similarity=0.153 Sum_probs=115.5
Q ss_pred ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEE-EEccCCCCCCCCcHH
Q psy13765 48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSC-YIQQDDRLQPLLTIE 126 (606)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~-yv~Q~~~l~~~ltv~ 126 (606)
.+.+.+|++++.++|++++|.||||+|||||++.++-. .+..++| |||.+....+ -++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-------------------~~la~~g~~vpa~~~~~~--~~~ 74 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-------------------VLMAQIGCFVPCDSADIP--IVD 74 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-------------------HHHHHhCCCcCcccEEEe--ccc
Confidence 35689999999999999999999999999999998721 1122233 6666543322 235
Q ss_pred HHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC---CC
Q psy13765 127 NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP---TT 203 (606)
Q Consensus 127 ~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP---Ts 203 (606)
+++..+|+.+. ...++|.|+++++.+++.+-. +++|++++|||| |+
T Consensus 75 ~il~~~~l~d~---~~~~lS~~~~e~~~~a~il~~----------------------------~~~~sLvLLDEp~~gT~ 123 (222)
T cd03285 75 CILARVGASDS---QLKGVSTFMAEMLETAAILKS----------------------------ATENSLIIIDELGRGTS 123 (222)
T ss_pred eeEeeeccccc---hhcCcChHHHHHHHHHHHHHh----------------------------CCCCeEEEEecCcCCCC
Confidence 56666676643 356789999999887766510 234999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 204 GLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 204 gLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
+||+.+.... .++.+.+ .|.++|++||+ .++.+++|++..+++|++...++
T Consensus 124 ~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 124 TYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 9999888543 3355554 48999999996 35789999999999999987765
No 401
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=9.6e-19 Score=180.74 Aligned_cols=76 Identities=25% Similarity=0.397 Sum_probs=66.7
Q ss_pred CCCCchhhhHHHHHHhhhc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765 173 TSNPNDQKKRLSIALELIN----NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248 (606)
Q Consensus 173 ~~~s~g~~krl~IA~aL~~----~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 248 (606)
..+|+||+||+.+|++++. +|+++++||||+|||+.+...+.+.++++.+ +.|+|+++|++. +.+.+|+++.|
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l 245 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLV 245 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEE
Confidence 3488999999999986543 9999999999999999999999999999865 789999999976 45899999999
Q ss_pred cCC
Q psy13765 249 SGG 251 (606)
Q Consensus 249 ~~G 251 (606)
.+|
T Consensus 246 ~~~ 248 (276)
T cd03241 246 EKE 248 (276)
T ss_pred EEe
Confidence 865
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.78 E-value=5.9e-19 Score=185.54 Aligned_cols=159 Identities=28% Similarity=0.469 Sum_probs=117.7
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC-C--hhhh---------cc------cEEEEccCCCC
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR-N--INAF---------RR------VSCYIQQDDRL 119 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~-~--~~~~---------~~------~~~yv~Q~~~l 119 (606)
..++|++++|+||||-||||-+|+|+|.+.|. -|+- ++.+- + .+.| ++ ++..=+|--.+
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PN-LG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~ 172 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPN-LGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDL 172 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccC-CCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHH
Confidence 35799999999999999999999999987664 2221 12110 0 0011 10 11111222112
Q ss_pred CCC---Cc-------------HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765 120 QPL---LT-------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 120 ~~~---lt-------------v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl 183 (606)
.|. -+ .+++++.++|+...|+.+.+|||||-||++||.+++.+
T Consensus 173 iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rd--------------------- 231 (591)
T COG1245 173 IPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRD--------------------- 231 (591)
T ss_pred HHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhcc---------------------
Confidence 221 02 26778888999999999999999999999866666666
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
.++.++|||||-||...+....+.++++++.+++||++.||+. .+--++|-|.++.+
T Consensus 232 ---------ADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~YG 288 (591)
T COG1245 232 ---------ADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILYG 288 (591)
T ss_pred ---------CCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEec
Confidence 9999999999999999999999999999988999999999976 46667888888863
No 403
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.77 E-value=1.7e-18 Score=164.81 Aligned_cols=144 Identities=23% Similarity=0.310 Sum_probs=97.5
Q ss_pred eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHc
Q psy13765 53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLL 132 (606)
Q Consensus 53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~ 132 (606)
...+..+.++.++.|+|||||||||+++++....-. .+|.+..... . +.-.++++....+ +
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~-~~~~~~~~~~-~------~~g~~~~~~~~~~-------i---- 72 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGG-AQSATRRRSG-V------KAGCIVAAVSAEL-------I---- 72 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHh-cchhhhccCc-c------cCCCcceeeEEEE-------e----
Confidence 344555566679999999999999999998664321 1222222100 0 0011122211111 0
Q ss_pred CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHH
Q psy13765 133 GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212 (606)
Q Consensus 133 gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~ 212 (606)
....++|+||+||+++|++|...+ ..+|+++++|||++|+|+.....
T Consensus 73 -------~~~~~lS~G~~~~~~la~~L~~~~--------------------------~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 73 -------FTRLQLSGGEKELSALALILALAS--------------------------LKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred -------hheeeccccHHHHHHHHHHHHhcC--------------------------CCCCCEEEEeCCCCCCCHHHHHH
Confidence 001238888888888877776531 01399999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 213 CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 213 i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
+.+.+.++.++|.++|++||+++ +.+.+|+++.|..
T Consensus 120 l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence 99999988766899999999975 4578999999864
No 404
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.77 E-value=1.3e-18 Score=180.83 Aligned_cols=168 Identities=26% Similarity=0.392 Sum_probs=118.8
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-------CCCccEEEECCccCChhhhcccEEEEccCCCC
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-------NGVTGQILTNGHSRNINAFRRVSCYIQQDDRL 119 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~-------~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l 119 (606)
....+|+|+|++++||++++|+|+|||||||+|++|.|... .+.+|.|.+--... .+.+|-+...
T Consensus 394 ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~--------~a~iPge~Ep 465 (593)
T COG2401 394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV--------SALIPGEYEP 465 (593)
T ss_pred eeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch--------hhccCccccc
Confidence 45679999999999999999999999999999999999531 12478877643211 1222222110
Q ss_pred -CCCCc--------------HHHHHHHcCCccc--cCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhH
Q psy13765 120 -QPLLT--------------IENVMSLLGLDES--QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKR 182 (606)
Q Consensus 120 -~~~lt--------------v~~~l~~~gl~~~--~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~kr 182 (606)
+..-| ..++++..|+.+. ..++.+.||-|||.|+.|
T Consensus 466 ~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KL--------------------------- 518 (593)
T COG2401 466 EFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKL--------------------------- 518 (593)
T ss_pred ccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHH---------------------------
Confidence 00111 1456666666542 233345566666666655
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhh-cceeeeecCCcE
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQM-FDQVYLLSGGQC 253 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~-~D~v~~L~~G~~ 253 (606)
|.++...|.+++.||-.+.||..|+..+.+-+.+++++ |.|++++||+|+ .+-++ -|+++++.-|.+
T Consensus 519 ---Akllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~AL~PD~li~vgYg~v 587 (593)
T COG2401 519 ---AKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGNALRPDTLILVGYGKV 587 (593)
T ss_pred ---HHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHhccCCceeEEeecccc
Confidence 55555559999999999999999999999999999975 999999999986 35555 688888865554
No 405
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.77 E-value=8.2e-18 Score=187.42 Aligned_cols=96 Identities=26% Similarity=0.465 Sum_probs=83.3
Q ss_pred ccCCCCCCCCchhhhHHHHHHhhhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765 167 FLDEPTTSNPNDQKKRLSIALELINNP---RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD 243 (606)
Q Consensus 167 ~~de~~~~~s~g~~krl~IA~aL~~~P---~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 243 (606)
-+.+|.+.|||||.||+.+|.+|.... .+.+|||||+||-......+++.|.+|.++|-|||++.|+++ +.+.+|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD 892 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTAD 892 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecC
Confidence 456677777777777777777776666 899999999999999999999999999999999999999976 679999
Q ss_pred eeeeec------CCcEEEEcChhHHHH
Q psy13765 244 QVYLLS------GGQCLYQGATDQLVN 264 (606)
Q Consensus 244 ~v~~L~------~G~~~~~G~~~~~~~ 264 (606)
.|+=|- +|+++..|+|+++.+
T Consensus 893 ~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 893 WIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999983 589999999999875
No 406
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.76 E-value=7e-19 Score=173.43 Aligned_cols=156 Identities=18% Similarity=0.113 Sum_probs=103.3
Q ss_pred eeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcC
Q psy13765 54 NLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLG 133 (606)
Q Consensus 54 ~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~g 133 (606)
..++++.+|++++|+|||||||||||++|++..-....|... . ..+..+++..|....+ +
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~------~--~~~~~i~~~dqi~~~~------------~ 80 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV------P--AESASIPLVDRIFTRI------------G 80 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc------c--ccccccCCcCEEEEEe------------c
Confidence 345566789999999999999999999999542111122111 0 0112233332221111 1
Q ss_pred CccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHH
Q psy13765 134 LDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC 213 (606)
Q Consensus 134 l~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i 213 (606)
.........+.++.+++| +..+.+++. +|+++++||||+|+|+.....+
T Consensus 81 ~~d~i~~~~s~~~~e~~~-l~~i~~~~~------------------------------~~~llllDEp~~gld~~~~~~l 129 (202)
T cd03243 81 AEDSISDGRSTFMAELLE-LKEILSLAT------------------------------PRSLVLIDELGRGTSTAEGLAI 129 (202)
T ss_pred CcccccCCceeHHHHHHH-HHHHHHhcc------------------------------CCeEEEEecCCCCCCHHHHHHH
Confidence 222223334556666554 554444444 4999999999999999988887
Q ss_pred HH-HHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 214 IK-LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 214 ~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
.. +++.+.+.+.++|++||+++ +.+.+|++..++.|++...++..++
T Consensus 130 ~~~ll~~l~~~~~~vi~~tH~~~--~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 130 AYAVLEHLLEKGCRTLFATHFHE--LADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHHhcCCeEEEECChHH--HHHHhhcCCCeEEEEEEEEecCCee
Confidence 65 56777777899999999853 5678999999999999988875443
No 407
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.76 E-value=1.3e-18 Score=171.09 Aligned_cols=136 Identities=18% Similarity=0.225 Sum_probs=95.3
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHH
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENV 128 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~ 128 (606)
+.+++|+++. +|++++|+||||||||||+|+|+|... +...|.+.... .+++|.+.+++.+|+.+-
T Consensus 14 ~~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 14 KRVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVI------LAQAGAPVCAS------SFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CeecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHH------HHHcCCEEecC------ccCcccceEEEeccchhc
Confidence 4577888665 479999999999999999999988532 11233332211 366777788888887664
Q ss_pred HHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHH
Q psy13765 129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQ 208 (606)
Q Consensus 129 l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~ 208 (606)
+.. ++. ....+.+|+.-+.+.+. ..+|+++++||||+|+|+.
T Consensus 80 l~~-~~s---------~~~~e~~~~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~ 121 (199)
T cd03283 80 LRD-GIS---------YFYAELRRLKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred ccc-ccC---------hHHHHHHHHHHHHHhcc----------------------------CCCCeEEEEecccCCCCHH
Confidence 422 221 11344555543333333 0259999999999999999
Q ss_pred HHHHHH-HHHHHHHhCCCEEEEEecCCch
Q psy13765 209 SCSQCI-KLLKMISQQGRTIICTIHQPSA 236 (606)
Q Consensus 209 ~~~~i~-~~l~~l~~~g~tii~~~H~~~~ 236 (606)
....+. .+++++.+.|.|+|++||+++.
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~~~ 150 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDLEL 150 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHH
Confidence 998775 4788888779999999999763
No 408
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.74 E-value=2.4e-17 Score=200.96 Aligned_cols=97 Identities=27% Similarity=0.401 Sum_probs=88.0
Q ss_pred cccCCCCCCCCchhhhHHHHHHhhhcC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q psy13765 166 MFLDEPTTSNPNDQKKRLSIALELINN---PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF 242 (606)
Q Consensus 166 ~~~de~~~~~s~g~~krl~IA~aL~~~---P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 242 (606)
+-|.+|+..|||||.||+.+|..|..+ +.+++|||||+||++.....+++.|++|.+.|.|||++.|++. +.+.+
T Consensus 1691 l~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~--~i~~a 1768 (1809)
T PRK00635 1691 LPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA--LLKQA 1768 (1809)
T ss_pred eeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--HHHhC
Confidence 467889999999999999999999865 7899999999999999999999999999999999999999965 56789
Q ss_pred ceeeeec------CCcEEEEcChhHHHH
Q psy13765 243 DQVYLLS------GGQCLYQGATDQLVN 264 (606)
Q Consensus 243 D~v~~L~------~G~~~~~G~~~~~~~ 264 (606)
|.++-|- +|++++.|+|+++.+
T Consensus 1769 D~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1769 DYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 9999993 489999999999865
No 409
>KOG0064|consensus
Probab=99.73 E-value=1.6e-17 Score=177.13 Aligned_cols=171 Identities=22% Similarity=0.384 Sum_probs=120.8
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~ 106 (606)
..|.++|+-.-.| ....++..++|.|++|-.+.|.||||||||+|+++|.|+.|. ..|.... | .
T Consensus 480 ~gI~lenIpvItP-------~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv-y~g~L~~---P---~-- 543 (728)
T KOG0064|consen 480 NGIILENIPVITP-------AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV-YNGLLSI---P---R-- 543 (728)
T ss_pred cceEEecCceecc-------CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc-cCCeeec---C---C--
Confidence 4578888877654 235689999999999999999999999999999999999864 3444432 1 1
Q ss_pred cccEEEEccCCCCC----------CCCc------------HHHHHHHcCCccccCCccc---------cCChHHHHHHHH
Q psy13765 107 RRVSCYIQQDDRLQ----------PLLT------------IENVMSLLGLDESQNTRSS---------QLSGGQKKRLSI 155 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~----------~~lt------------v~~~l~~~gl~~~~~~~~~---------~lSgGqrqRv~i 155 (606)
...+-|+||.|.+- |..+ .+.++..+.|++...+-.+ -||||||||+..
T Consensus 544 ~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~m 623 (728)
T KOG0064|consen 544 PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGM 623 (728)
T ss_pred CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHH
Confidence 23489999988653 3211 1345555556554443322 256666666655
Q ss_pred HHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 156 a~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
||.+. ++|+.-+|||-||+........+.+..++ .|.+.+-++|+|+
T Consensus 624 ARm~y------------------------------HrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps 670 (728)
T KOG0064|consen 624 ARMFY------------------------------HRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS 670 (728)
T ss_pred HHHHh------------------------------cCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc
Confidence 55554 45999999999999988888777776653 4999999999998
Q ss_pred hHHHhhcceeeee
Q psy13765 236 ATLFQMFDQVYLL 248 (606)
Q Consensus 236 ~~i~~~~D~v~~L 248 (606)
+.++-..++-.
T Consensus 671 --lwk~h~~ll~~ 681 (728)
T KOG0064|consen 671 --LWKYHTHLLEF 681 (728)
T ss_pred --HHHHHHHHHhc
Confidence 45554554444
No 410
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.70 E-value=2.6e-17 Score=162.47 Aligned_cols=136 Identities=18% Similarity=0.277 Sum_probs=99.8
Q ss_pred ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcH-H
Q psy13765 48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-E 126 (606)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv-~ 126 (606)
++.+.+|+++++++|++++|+||||+||||+++++++..-- .+...+| +...+.+++ +
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l------------------a~~G~~v---pa~~~~l~~~d 73 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM------------------AQIGCFV---PAEYATLPIFN 73 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH------------------HHcCCCc---chhhcCccChh
Confidence 45789999999999999999999999999999999876310 0111122 122233332 4
Q ss_pred HHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCC
Q psy13765 127 NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206 (606)
Q Consensus 127 ~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD 206 (606)
++...++..+..++..+.+|+|++|+ ..+.+++. +|+++++|||++|+|
T Consensus 74 ~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~------------------------------~~~lvllDE~~~gt~ 122 (204)
T cd03282 74 RLLSRLSNDDSMERNLSTFASEMSET-AYILDYAD------------------------------GDSLVLIDELGRGTS 122 (204)
T ss_pred heeEecCCccccchhhhHHHHHHHHH-HHHHHhcC------------------------------CCcEEEeccccCCCC
Confidence 56666676666666777899998865 33333444 499999999999999
Q ss_pred HHHHHHH-HHHHHHHHhCCCEEEEEecCCc
Q psy13765 207 SQSCSQC-IKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 207 ~~~~~~i-~~~l~~l~~~g~tii~~~H~~~ 235 (606)
+.....+ ..+++.+.+.|.++|++||+.+
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 9876665 4567788878999999999965
No 411
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.68 E-value=1.2e-16 Score=187.47 Aligned_cols=94 Identities=21% Similarity=0.420 Sum_probs=87.8
Q ss_pred cCCCCCCCCchhhhHHHHHHhhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhccee
Q psy13765 168 LDEPTTSNPNDQKKRLSIALELINNP--RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV 245 (606)
Q Consensus 168 ~de~~~~~s~g~~krl~IA~aL~~~P--~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v 245 (606)
+|.++..|||||||||.||++|+.+| ++++|||||+|||+..+..+.++|++++++|.|||+++|++.. + ..||++
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i-~~aD~v 560 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-I-RAADYI 560 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEE
Confidence 78999999999999999999999997 9999999999999999999999999998889999999999774 5 579999
Q ss_pred eee------cCCcEEEEcChhHHH
Q psy13765 246 YLL------SGGQCLYQGATDQLV 263 (606)
Q Consensus 246 ~~L------~~G~~~~~G~~~~~~ 263 (606)
++| ++|++++.|+++++.
T Consensus 561 i~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 561 VDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred EEeccccCCCCCEEeeccCHHHHh
Confidence 999 899999999998874
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.68 E-value=1.6e-16 Score=186.15 Aligned_cols=94 Identities=23% Similarity=0.425 Sum_probs=87.7
Q ss_pred cCCCCCCCCchhhhHHHHHHhhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhccee
Q psy13765 168 LDEPTTSNPNDQKKRLSIALELINNP--RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV 245 (606)
Q Consensus 168 ~de~~~~~s~g~~krl~IA~aL~~~P--~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v 245 (606)
+|.++..|||||+|||.||++|+.+| ++++|||||+|||+.+...+.++|++++++|.|||+++|+++ .+ ..||++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~v 558 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYV 558 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEE
Confidence 68899999999999999999999986 899999999999999999999999999988999999999976 34 589999
Q ss_pred eee------cCCcEEEEcChhHHH
Q psy13765 246 YLL------SGGQCLYQGATDQLV 263 (606)
Q Consensus 246 ~~L------~~G~~~~~G~~~~~~ 263 (606)
++| ++|++++.|+++++.
T Consensus 559 i~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 559 IDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEecccccCCCCEEeeccCHHHHh
Confidence 999 899999999998874
No 413
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.67 E-value=1.5e-16 Score=158.62 Aligned_cols=160 Identities=16% Similarity=0.164 Sum_probs=106.2
Q ss_pred ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765 48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN 127 (606)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~ 127 (606)
++.+.+|++++.++ ++++|.||||+||||+||++++..-.... |...... +..++++.| +++.+++.+
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~------g~~vp~~--~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQI------GSFVPAS--KAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhcc------CCeeccc--cceecceee---EeccCCchh
Confidence 34588999999887 99999999999999999999875321111 2222111 345666654 344444322
Q ss_pred HHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC---CCC
Q psy13765 128 VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP---TTG 204 (606)
Q Consensus 128 ~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP---Tsg 204 (606)
++|.|+.+... |.+++.-+.+.+.+|++++|||| |++
T Consensus 85 ----------------~ls~g~s~f~~------------------------e~~~l~~~l~~~~~~~llllDEp~~gt~~ 124 (216)
T cd03284 85 ----------------DLAGGRSTFMV------------------------EMVETANILNNATERSLVLLDEIGRGTST 124 (216)
T ss_pred ----------------hhccCcchHHH------------------------HHHHHHHHHHhCCCCeEEEEecCCCCCCh
Confidence 34555544332 11122222233456999999999 888
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 205 LDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 205 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
+|.... ...+++.+.+. +.|+|++||+. ++.+++|++..+.+|++...++.+++.
T Consensus 125 lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 125 YDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred HHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 887552 23455556665 89999999995 467899998888889988877776654
No 414
>KOG0066|consensus
Probab=99.66 E-value=9.8e-17 Score=167.46 Aligned_cols=215 Identities=20% Similarity=0.298 Sum_probs=137.7
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC---CCC-----CccEEEEC
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR---SNG-----VTGQILTN 97 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~---~~~-----~~G~I~~~ 97 (606)
.+.|.++|.+.+. .++.++.|.|+.|-.|..++++||||-||||||+-|+.+. +|. .+-+|..+
T Consensus 262 a~DIKiEnF~ISA--------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad 333 (807)
T KOG0066|consen 262 AMDIKIENFDISA--------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVAD 333 (807)
T ss_pred cccceeeeeeeec--------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeec
Confidence 5778899888774 4577999999999999999999999999999999999863 221 12222222
Q ss_pred CccC-Ch--hhhcccEEEEccCCCC-----CCCCcHHHHHHHcCCccccCCccccCChHHHHHHHH-HHHHhcCCccccc
Q psy13765 98 GHSR-NI--NAFRRVSCYIQQDDRL-----QPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSI-ALELINNPRVMFL 168 (606)
Q Consensus 98 G~~~-~~--~~~~~~~~yv~Q~~~l-----~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~i-a~~L~~~~~~~~~ 168 (606)
..+. +. ..-.++...+..++.+ ....|+.+-++..- ++ -+-++.-|..-|-|--+ +..+... .-
T Consensus 334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~-~E--LraiGA~sAEarARRILAGLGFskE----MQ 406 (807)
T KOG0066|consen 334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVA-DE--LRAIGADSAEARARRILAGLGFSKE----MQ 406 (807)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH-HH--HHHhccccchhHHHHHHhhcCCChh----Hh
Confidence 2110 00 0000111111111100 11122222111100 00 01122334333322221 1111111 22
Q ss_pred CCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765 169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248 (606)
Q Consensus 169 de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 248 (606)
+.|+...|||=|.||++||||..+|.+|+|||||+.||-.+...+-+.|+.++ +|.++++||-. .+-..|..|+.|
T Consensus 407 ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHL 482 (807)
T KOG0066|consen 407 ERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHL 482 (807)
T ss_pred cCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhh
Confidence 67899999999999999999999999999999999999999988888888774 59999999966 588999999999
Q ss_pred cCCcEE-EEcCh
Q psy13765 249 SGGQCL-YQGAT 259 (606)
Q Consensus 249 ~~G~~~-~~G~~ 259 (606)
++-++. |.|..
T Consensus 483 D~qkLhyYrGNY 494 (807)
T KOG0066|consen 483 DNQKLHYYRGNY 494 (807)
T ss_pred hhhhhhhhcchH
Confidence 987775 44654
No 415
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=2.5e-15 Score=154.86 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=59.1
Q ss_pred CCCCchhhhHHHHHHhhh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc-
Q psy13765 173 TSNPNDQKKRLSIALELI---------NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF- 242 (606)
Q Consensus 173 ~~~s~g~~krl~IA~aL~---------~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~- 242 (606)
..+|+||||++.||++|+ .+|+++++||||++||+..+..+.+.++++. .+++++|+.. .+...|
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~-~~~~~~~ 256 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLA-DFDALWL 256 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCch-hccchhc
Confidence 346778888888887764 7999999999999999999999999997653 3555555544 355666
Q ss_pred --ceeeeecCCcE
Q psy13765 243 --DQVYLLSGGQC 253 (606)
Q Consensus 243 --D~v~~L~~G~~ 253 (606)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 67899999885
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.61 E-value=1.5e-15 Score=155.68 Aligned_cols=140 Identities=21% Similarity=0.232 Sum_probs=95.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCcccc
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQ 138 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~ 138 (606)
+-++|+||||||||||+++|+|...+ .+|+|.++|+++. ..++.+.+++++|++.. +.++|.+ .+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~-~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~-~r~~v~~--------~~~ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST-GISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVG-IRTDVLD--------GCP 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC-CCceEEECCEEeecchhHHHHHHHhccccccccc-ccccccc--------cch
Confidence 67899999999999999999999877 4999999998753 24556667888987633 3333211 110
Q ss_pred CCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q psy13765 139 NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK 218 (606)
Q Consensus 139 ~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~ 218 (606)
. ..|++ ..+...+|+++++|||++ ...+..+++
T Consensus 182 k------~~~~~-----------------------------------~~i~~~~P~villDE~~~------~e~~~~l~~ 214 (270)
T TIGR02858 182 K------AEGMM-----------------------------------MLIRSMSPDVIVVDEIGR------EEDVEALLE 214 (270)
T ss_pred H------HHHHH-----------------------------------HHHHhCCCCEEEEeCCCc------HHHHHHHHH
Confidence 0 11211 111123599999999974 233444555
Q ss_pred HHHhCCCEEEEEecCCchH-H-----------HhhcceeeeecCCcEEEEcChhHH
Q psy13765 219 MISQQGRTIICTIHQPSAT-L-----------FQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 219 ~l~~~g~tii~~~H~~~~~-i-----------~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
.+ ++|.|+|+++|+++.. + ...|||+++|++|+ ..|+++++
T Consensus 215 ~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 215 AL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 54 4699999999986532 2 26699999999877 56666554
No 417
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.56 E-value=2.7e-15 Score=145.97 Aligned_cols=140 Identities=17% Similarity=0.192 Sum_probs=88.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccc
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSS 143 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~ 143 (606)
+++|.||||+||||+||.++-.......|... ..+ +-.++++. +++..++.++..+...+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v------~a~--~~~~~~~d------------~il~~~~~~d~~~~~~s 60 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFV------PAE--SAELPVFD------------RIFTRIGASDSLAQGLS 60 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCe------eeh--heEecccc------------eEEEEeCCCCchhcccc
Confidence 46899999999999999997321100122211 101 11122221 22333455555566677
Q ss_pred cCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHh
Q psy13765 144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI-KLLKMISQ 222 (606)
Q Consensus 144 ~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~-~~l~~l~~ 222 (606)
.+|+|++|...+ +.. +.+|+++++|||++|+|+.....+. .+++.+.+
T Consensus 61 ~fs~~~~~l~~~---l~~----------------------------~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~ 109 (185)
T smart00534 61 TFMVEMKETANI---LKN----------------------------ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE 109 (185)
T ss_pred HHHHHHHHHHHH---HHh----------------------------CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh
Confidence 888887764332 221 1249999999999999999887765 56677777
Q ss_pred C-CCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765 223 Q-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256 (606)
Q Consensus 223 ~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~ 256 (606)
+ +.++|++||++ ++.+.+|+.--++++++...
T Consensus 110 ~~~~~iii~TH~~--~l~~~~~~~~~v~~~~~~~~ 142 (185)
T smart00534 110 KIGALTLFATHYH--ELTKLADEHPGVRNLHMSAD 142 (185)
T ss_pred cCCCeEEEEecHH--HHHHHhhcCccceEEEEEEE
Confidence 4 89999999996 36788886444455554443
No 418
>PRK00064 recF recombination protein F; Reviewed
Probab=99.54 E-value=2.4e-13 Score=145.67 Aligned_cols=81 Identities=20% Similarity=0.333 Sum_probs=67.2
Q ss_pred CCCCCCCCchhhhHHHHHHhhh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q psy13765 169 DEPTTSNPNDQKKRLSIALELI---------NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLF 239 (606)
Q Consensus 169 de~~~~~s~g~~krl~IA~aL~---------~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~ 239 (606)
..+...+|+||+|++.+|+.|+ .+|+|++||||+++||+..+..+.+.+.++ +..+++|+|++.. +.
T Consensus 268 ~~~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~ 343 (361)
T PRK00064 268 LPAADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LA 343 (361)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hh
Confidence 3455678999999999999986 799999999999999999999999988754 4588999998653 44
Q ss_pred hhc--ceeeeecCCcE
Q psy13765 240 QMF--DQVYLLSGGQC 253 (606)
Q Consensus 240 ~~~--D~v~~L~~G~~ 253 (606)
..+ ++++.+++|++
T Consensus 344 ~~~~~~~i~~v~~G~i 359 (361)
T PRK00064 344 DLLENAKIFHVEQGKI 359 (361)
T ss_pred hhhccCcEEEEeCCEE
Confidence 443 47888999986
No 419
>KOG0063|consensus
Probab=99.53 E-value=4e-14 Score=148.23 Aligned_cols=159 Identities=24% Similarity=0.359 Sum_probs=114.4
Q ss_pred cccceeeeEEEeCC-----eEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCC
Q psy13765 49 KDVLKNLCGRFPSN-----QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLL 123 (606)
Q Consensus 49 ~~iL~~vs~~i~~G-----e~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~l 123 (606)
+..+.+..+.|+.| |++..+|.||.|||||+++++|++.++..|+|-.-. ++|=||.-.--..-
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~ln-----------VSykpqkispK~~~ 417 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLN-----------VSYKPQKISPKREG 417 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccc-----------eeccccccCccccc
Confidence 45677777777776 578999999999999999999988775455554322 33333332222222
Q ss_pred c------------------HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765 124 T------------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 124 t------------------v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I 185 (606)
| +.++++-+.+++..|..+.+|||||.||+++|
T Consensus 418 tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~----------------------------- 468 (592)
T KOG0063|consen 418 TVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALA----------------------------- 468 (592)
T ss_pred hHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHH-----------------------------
Confidence 2 34555566666666666777777777777654
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS-QQGRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
.+|-..+++.+.|||.+-||++.+...-+.+++.- +.++|-.++.||.--+ --++||+++..
T Consensus 469 -KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfIma-TYladrvivf~ 531 (592)
T KOG0063|consen 469 -LCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMA-TYLADRVIVFE 531 (592)
T ss_pred -HhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHH-HhhcceeEEEe
Confidence 44555599999999999999999999989888875 4578999999996543 25789998875
No 420
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.49 E-value=2.5e-13 Score=135.37 Aligned_cols=77 Identities=32% Similarity=0.465 Sum_probs=57.4
Q ss_pred cCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy13765 144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ 223 (606)
Q Consensus 144 ~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~ 223 (606)
.+|||||.++++|.-|+ ..-....++++||||.++||...+..+.++|+++.+
T Consensus 136 ~lSgGEk~~~~Lal~lA--------------------------~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLA--------------------------LQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp GS-HHHHHHHHHHHHHH--------------------------HHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccccc--------------------------cccccccccccccccccccccccccccccccccccc-
Confidence 79999999998876553 222345889999999999999999999999998865
Q ss_pred CCEEEEEecCCchHHHhhcceeeeec
Q psy13765 224 GRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 224 g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
+.-+|++||++. ++..+|+.+-+.
T Consensus 189 ~~Q~ii~Th~~~--~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNPE--MFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-HH--HHTT-SEEEEEE
T ss_pred cccccccccccc--cccccccccccc
Confidence 478999999954 678999987763
No 421
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.48 E-value=6.1e-14 Score=162.78 Aligned_cols=131 Identities=22% Similarity=0.267 Sum_probs=90.2
Q ss_pred eeeEEEeCC-eEEEEECCCCCCHHHHHHHHhCCC-CCCCcc-EEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHH
Q psy13765 54 NLCGRFPSN-QLIAIMGPSGAGKSSLLDVLSGYR-SNGVTG-QILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMS 130 (606)
Q Consensus 54 ~vs~~i~~G-e~~aIiGpsGaGKSTLL~~L~g~~-~~~~~G-~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~ 130 (606)
.+|+.+.+| ++++|.||||+|||||||+|+|.. .+ ..| .|..+ ....++|..|.. .
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a-q~G~~Vpa~--------~~~~~~~~d~i~------------~ 371 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF-QSGIPIPAN--------EHSEIPYFEEIF------------A 371 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH-HhCCCccCC--------ccccccchhhee------------e
Confidence 368888877 999999999999999999999862 11 122 11110 001123322221 1
Q ss_pred HcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHH
Q psy13765 131 LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSC 210 (606)
Q Consensus 131 ~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~ 210 (606)
.++.+.........+|+|+++++.++..+ .+|+++++|||++|+|+...
T Consensus 372 ~i~~~~si~~~LStfS~~m~~~~~il~~~-------------------------------~~~sLvLlDE~g~GtD~~eg 420 (771)
T TIGR01069 372 DIGDEQSIEQNLSTFSGHMKNISAILSKT-------------------------------TENSLVLFDELGAGTDPDEG 420 (771)
T ss_pred ecChHhHHhhhhhHHHHHHHHHHHHHHhc-------------------------------CCCcEEEecCCCCCCCHHHH
Confidence 11222222334566899999887765443 33999999999999999999
Q ss_pred HHH-HHHHHHHHhCCCEEEEEecCCch
Q psy13765 211 SQC-IKLLKMISQQGRTIICTIHQPSA 236 (606)
Q Consensus 211 ~~i-~~~l~~l~~~g~tii~~~H~~~~ 236 (606)
..+ ..+++.+++.|.++|++||+...
T Consensus 421 ~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 421 SALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred HHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 998 57888888889999999999653
No 422
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.45 E-value=4.5e-12 Score=127.65 Aligned_cols=226 Identities=14% Similarity=0.128 Sum_probs=157.0
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcCC-CCC--hHH----HHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy13765 341 RGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNS-GEY--ASS----VLINYNLLFSILIHHVMTSMMLNILTFPMEMSI 413 (606)
Q Consensus 341 R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f~~~-~~~--~~~----~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v 413 (606)
|+++...|||.....-+++.++..+++|.++-+. +++ ..+ .+--.|.+.+.....+..... ......|+.+
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~~~--~~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFSGI--SVIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHhCH
Confidence 6778889999999999999999999999887542 111 111 111123333222222221111 1111122233
Q ss_pred heecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhccccch-
Q psy13765 414 LIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVV- 492 (606)
Q Consensus 414 ~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~~~~~- 492 (606)
+.|=. ..=.+...|+++|.+.+++..++..+++..+.+++.+.+. ..++.+++..++..++..++|.++++..++.
T Consensus 79 ~~~~~-~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 79 LKEIL-VAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 33222 2225678999999999999999999999999888877553 3455555566677778899999999987654
Q ss_pred hHHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccCCCccccCChhHHHhhcCCC
Q psy13765 493 NGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQP 572 (606)
Q Consensus 493 ~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~~~c~~~~g~~~L~~~~~~ 572 (606)
.++.+.+++..+++.+||.+.|.+.+|+|++|+.+++|++|+.|++-....+ +. .
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~--~~-----------------------~ 210 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAG--VS-----------------------P 210 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhC--CC-----------------------c
Confidence 4777888889999999999999999999999999999999999986544332 10 0
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHH
Q psy13765 573 SDNFWSSSVTLVFILIVMKLIAYF 596 (606)
Q Consensus 573 ~~~~w~~~~il~~~~~~~~~~~~~ 596 (606)
..+.|.++++|+.+.+++.+++..
T Consensus 211 ~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 211 TFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Confidence 134567788999999888877654
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.44 E-value=4.3e-13 Score=133.45 Aligned_cols=131 Identities=18% Similarity=0.152 Sum_probs=81.6
Q ss_pred ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC--CCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--RSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN 127 (606)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~--~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~ 127 (606)
.+=+|+++.=..+..++|.||||+|||||||.++.. .. ..|...... .-.++|..|.......
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la--~~G~~v~a~--------~~~~~~~d~i~~~l~~----- 81 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA--HIGSFVPAD--------SATIGLVDKIFTRMSS----- 81 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH--hCCCeeEcC--------CcEEeeeeeeeeeeCC-----
Confidence 344555543222389999999999999999999842 22 244443221 1235666664322110
Q ss_pred HHHHcCCccccCCccccCC--hHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC
Q psy13765 128 VMSLLGLDESQNTRSSQLS--GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205 (606)
Q Consensus 128 ~l~~~gl~~~~~~~~~~lS--gGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL 205 (606)
.+.....+| .-|.||++++++ ++.+|+++++|||++|+
T Consensus 82 ----------~~si~~~~S~f~~el~~l~~~l~------------------------------~~~~~slvllDE~~~gt 121 (213)
T cd03281 82 ----------RESVSSGQSAFMIDLYQVSKALR------------------------------LATRRSLVLIDEFGKGT 121 (213)
T ss_pred ----------ccChhhccchHHHHHHHHHHHHH------------------------------hCCCCcEEEeccccCCC
Confidence 011111233 344566665544 44459999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhC---CCEEEEEecCCc
Q psy13765 206 DSQSCSQC-IKLLKMISQQ---GRTIICTIHQPS 235 (606)
Q Consensus 206 D~~~~~~i-~~~l~~l~~~---g~tii~~~H~~~ 235 (606)
|+.....+ ...++++.++ +.++|++||+++
T Consensus 122 d~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 122 DTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 99865555 5688888764 358999999965
No 424
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.43 E-value=3.7e-12 Score=125.80 Aligned_cols=151 Identities=16% Similarity=0.169 Sum_probs=123.1
Q ss_pred cchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhccccchhHHHHHHHHH
Q psy13765 423 YSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLV 502 (606)
Q Consensus 423 Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~~~~~~a~~~~~~~~ 502 (606)
-+...++++|.+..++..+++++++..+.|++.|++.. .++.+++..++..++..++|.++++..+.. +.......+
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~-~~~~~~~~~ 133 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNV-GRFLALVLL 133 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 45567899999999999999999999999999999864 577788888889999999999999987643 333444455
Q ss_pred HHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccCCCccccCChhHHHhhcCCCCCChhhhHHH
Q psy13765 503 VPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQPSDNFWSSSVT 582 (606)
Q Consensus 503 ~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~~~c~~~~g~~~L~~~~~~~~~~w~~~~i 582 (606)
.+.+.++|.+.|.+.+|.|++|+.|++|.+|+.+++-...++. .....|.++++
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~--------------------------~~~~~~~~~~~ 187 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGG--------------------------NDGTLWQAVAV 187 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCC--------------------------cHHHHHHHHHH
Confidence 6777789999999999999999999999999999997665541 01245888999
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy13765 583 LVFILIVMKLIAYFFLSWRI 602 (606)
Q Consensus 583 l~~~~~~~~~~~~~~L~~~~ 602 (606)
|+++.+++.++++..+|++.
T Consensus 188 L~~~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 188 LLLILVVFLALSLLSARRKR 207 (208)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 99999999888888766443
No 425
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.43 E-value=6.2e-13 Score=132.90 Aligned_cols=134 Identities=18% Similarity=0.185 Sum_probs=88.0
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHH
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENV 128 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~ 128 (606)
+.+.+|+++.+++|++++|.||||+||||+++++++..-....|...... .....-+.+....+..+|.+
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~~~~~~~~i~~~~~~~d~~--------- 87 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SATLSIFDSVLTRMGASDSI--------- 87 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ceEEeccceEEEEecCcccc---------
Confidence 56899999999999999999999999999999999942212356543321 11111111222222222211
Q ss_pred HHHcCCccccCCccccCC--hHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCC
Q psy13765 129 MSLLGLDESQNTRSSQLS--GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206 (606)
Q Consensus 129 l~~~gl~~~~~~~~~~lS--gGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD 206 (606)
..++| ..|-+|++-...-+ ++|+++++|||.+|.|
T Consensus 88 -------------~~~~StF~~e~~~~~~il~~~------------------------------~~~sLvllDE~~~gT~ 124 (222)
T cd03287 88 -------------QHGMSTFMVELSETSHILSNC------------------------------TSRSLVILDELGRGTS 124 (222)
T ss_pred -------------ccccchHHHHHHHHHHHHHhC------------------------------CCCeEEEEccCCCCCC
Confidence 12233 24555555333333 3499999999999999
Q ss_pred HHHHHHH-HHHHHHHHhC-CCEEEEEecCCc
Q psy13765 207 SQSCSQC-IKLLKMISQQ-GRTIICTIHQPS 235 (606)
Q Consensus 207 ~~~~~~i-~~~l~~l~~~-g~tii~~~H~~~ 235 (606)
+.....+ ..+++.+.+. +.++|++||++.
T Consensus 125 ~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 125 THDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred hhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 8777764 5677787776 899999999975
No 426
>PRK14079 recF recombination protein F; Provisional
Probab=99.41 E-value=4.9e-13 Score=142.66 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=62.3
Q ss_pred CCCchhhhHHHHHHhhh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcce
Q psy13765 174 SNPNDQKKRLSIALELI---------NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQ 244 (606)
Q Consensus 174 ~~s~g~~krl~IA~aL~---------~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~ 244 (606)
.+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.... .++|-+++.+ ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCCC-----CCCce
Confidence 47999999999999999 8999999999999999999999998886432 3444444432 57899
Q ss_pred eeeecCCcEEEEcC
Q psy13765 245 VYLLSGGQCLYQGA 258 (606)
Q Consensus 245 v~~L~~G~~~~~G~ 258 (606)
++.+.+|++.-..|
T Consensus 335 ~~~~~~~~~~~~~~ 348 (349)
T PRK14079 335 TLRIEAGVFTPEAP 348 (349)
T ss_pred EEEEeccEecCCCC
Confidence 99999988754443
No 427
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.39 E-value=6.9e-12 Score=136.75 Aligned_cols=166 Identities=19% Similarity=0.260 Sum_probs=113.5
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC-----------ChhhhcccEEEEccCC
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR-----------NINAFRRVSCYIQQDD 117 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~-----------~~~~~~~~~~yv~Q~~ 117 (606)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|...+ ..|.|.+.|+.- +...+++.+.+|.+.+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA-DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 5689999 99999999999999999999999999999776 479999966432 1223566788887654
Q ss_pred CCCC--------CCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhh
Q psy13765 118 RLQP--------LLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189 (606)
Q Consensus 118 ~l~~--------~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL 189 (606)
.-.. .+|+.|....-|.+- . +++|.-+. .|+|+
T Consensus 224 ~~~~~r~~~~~~a~~iAEyfr~~g~~V----l------------------------l~~Dsltr-----------~A~A~ 264 (438)
T PRK07721 224 QPALMRIKGAYTATAIAEYFRDQGLNV----M------------------------LMMDSVTR-----------VAMAQ 264 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCcE----E------------------------EEEeChHH-----------HHHHH
Confidence 3210 011222222212110 0 11222111 11110
Q ss_pred hcCCcE-EEEeCC--CCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 190 INNPRV-MFLDEP--TTGLDSQSCSQCIKLLKMISQ--QGR-----TIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 190 ~~~P~l-llLDEP--TsgLD~~~~~~i~~~l~~l~~--~g~-----tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
-+| +.+.|| |+|+|+.....+.++++++.+ +|. ||++.+||.+. .+||++..+.+|+++..++.
T Consensus 265 ---rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~l 338 (438)
T PRK07721 265 ---REIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQL 338 (438)
T ss_pred ---HHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccH
Confidence 000 113353 679999999999999999974 575 99999999874 68999999999999999987
Q ss_pred hH
Q psy13765 260 DQ 261 (606)
Q Consensus 260 ~~ 261 (606)
.+
T Consensus 339 a~ 340 (438)
T PRK07721 339 AN 340 (438)
T ss_pred HH
Confidence 65
No 428
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.35 E-value=5.8e-12 Score=127.94 Aligned_cols=171 Identities=15% Similarity=0.187 Sum_probs=104.8
Q ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCcc
Q psy13765 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDE 136 (606)
Q Consensus 57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~ 136 (606)
..+.+||.++|+||+|+|||||++.|++..... .+++. .+.++-++.. .++.++.+.+.-.-
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~-------------~~v~vI~er~----~ev~el~~~I~~~~ 72 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVY-------------LIVLLIDERP----EEVTDMQRSVKGEV 72 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeE-------------EEEEEccCCC----ccHHHHHHHhccEE
Confidence 368899999999999999999999999875432 11111 0111111110 12333322220000
Q ss_pred ccCCccccCChHHHHH-----HHHHHHHh--cCCcccccCCCC--------------CCCCchh--------hhHHHHHH
Q psy13765 137 SQNTRSSQLSGGQKKR-----LSIALELI--NNPRVMFLDEPT--------------TSNPNDQ--------KKRLSIAL 187 (606)
Q Consensus 137 ~~~~~~~~lSgGqrqR-----v~ia~~L~--~~~~~~~~de~~--------------~~~s~g~--------~krl~IA~ 187 (606)
...+ .+.|-++|-+ .+.|..+. ...-++++||.+ ..+|||+ +||+++|+
T Consensus 73 v~~~--~~~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar 150 (249)
T cd01128 73 IAST--FDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAAR 150 (249)
T ss_pred EEec--CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhc
Confidence 0000 0012233222 11222221 112223444443 3468999 99999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 188 ELINNPRVMFLDEPTTGLDSQSCSQ-CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 188 aL~~~P~lllLDEPTsgLD~~~~~~-i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
++..+++|.+| ||+.+|+.+... ++ +..+...+.|.|+.+|+... ...+|.|.+|++|+.
T Consensus 151 ~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~paI~vl~s~sr 211 (249)
T cd01128 151 NIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIFPAIDILKSGTR 211 (249)
T ss_pred CCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCCCeEEEcCCCCc
Confidence 99999999999 999999755544 54 55555567899999999764 489999999999987
No 429
>KOG0062|consensus
Probab=99.34 E-value=1.1e-12 Score=140.51 Aligned_cols=187 Identities=25% Similarity=0.336 Sum_probs=137.2
Q ss_pred CCceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh
Q psy13765 24 ADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI 103 (606)
Q Consensus 24 ~~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~ 103 (606)
-.+..+++.+|++.|..+ +-+++.+++..++.-+-.+++|+||+||||++|++.|-..| ..|.+.+++
T Consensus 358 ~~~p~l~i~~V~f~y~p~------~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~-~rgi~~~~~----- 425 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPS------EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP-TRGIVGRHP----- 425 (582)
T ss_pred CCCCeeEEEeeeccCCCc------chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc-ccceeeecc-----
Confidence 345679999999887432 22799999999999999999999999999999999997665 478777654
Q ss_pred hhhcccEEEEccCCCC---------------CCCCcHHHH---HHHcCCcc-ccCCccccCChHHHHHHHHHHHHhcCCc
Q psy13765 104 NAFRRVSCYIQQDDRL---------------QPLLTIENV---MSLLGLDE-SQNTRSSQLSGGQKKRLSIALELINNPR 164 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l---------------~~~ltv~~~---l~~~gl~~-~~~~~~~~lSgGqrqRv~ia~~L~~~~~ 164 (606)
|.+++|-.|...- +|..|-+++ +..+|++. .+...+.+||||||-||+
T Consensus 426 ---r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrva---------- 492 (582)
T KOG0062|consen 426 ---RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVA---------- 492 (582)
T ss_pred ---cceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHH----------
Confidence 4567777775432 333333333 22344433 222234455555555555
Q ss_pred ccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcce
Q psy13765 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQ 244 (606)
Q Consensus 165 ~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~ 244 (606)
+|.+...+|-+|+|||||+.||..+-..+.+.|+.. +-.||+++||.+ .+-..|+.
T Consensus 493 --------------------fA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E 548 (582)
T KOG0062|consen 493 --------------------FAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKE 548 (582)
T ss_pred --------------------HHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCce
Confidence 555555569999999999999999999998888766 347999999954 68899999
Q ss_pred eeeecCCcEEE-EcCh
Q psy13765 245 VYLLSGGQCLY-QGAT 259 (606)
Q Consensus 245 v~~L~~G~~~~-~G~~ 259 (606)
+++.++|++.- .|..
T Consensus 549 ~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 549 LWVVEDGKVTPIEGGI 564 (582)
T ss_pred eEEEcCCcEEeeeccH
Confidence 99999999864 3444
No 430
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.32 E-value=2.2e-10 Score=117.06 Aligned_cols=234 Identities=13% Similarity=0.091 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhH-----HHHHHHHHHHHHHHHHHHHh-hhh
Q psy13765 335 LGVLLSRGLLKVKRD-STLTHLRIIVNIFVALMLGVLFQNSGEYASSVLIN-----YNLLFSILIHHVMTSMMLNI-LTF 407 (606)
Q Consensus 335 ~~~l~~R~~~~~~Rd-~~~~~~r~~~~i~~all~G~~f~~~~~~~~~~~~~-----~g~lf~~~~~~~~~~~~~~~-~~f 407 (606)
...+.+|+++..+|+ |......+++.++.-+++|..+-....+..+ .+. -|++-+.++.. +++... ..+
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g-~~y~~f~~pg~l~~~~~~~---~~~~~~~~~~ 82 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG-VSYAAFLAAGMVATSAMTA---STFETIYATF 82 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 445669999999999 9988888888888888888887543111111 111 12222221111 111111 111
Q ss_pred hh--hhhhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHH
Q psy13765 408 PM--EMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMV 485 (606)
Q Consensus 408 ~~--er~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i 485 (606)
.. |+..++|-+..- -++..+.++|.+.+.-..++..++...+.+++ |..+. ......+...++..++..++|.++
T Consensus 83 ~~~r~~g~~~~l~~~P-v~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~ 159 (253)
T TIGR01291 83 ARMRVTRTWEAMLYTP-ITVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEW-WSLIYILPVIALTGLAFASLSMLV 159 (253)
T ss_pred HHHHHcccHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 222333322222 37789999999999877777776655555433 44333 344444455566777778899999
Q ss_pred hccccch-hHHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccCCCccccCChhH
Q psy13765 486 GAVFNVV-NGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKK 564 (606)
Q Consensus 486 ~~~~~~~-~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~~~c~~~~g~~ 564 (606)
|+..++. .+..+..++..|++.+||.+.|.+.+|+|++|+.+++|+.|+.|++-...++ +
T Consensus 160 a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g--~----------------- 220 (253)
T TIGR01291 160 AALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLG--G----------------- 220 (253)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhC--C-----------------
Confidence 9987654 4677788899999999999999999999999999999999999986544332 1
Q ss_pred HHhhcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhh
Q psy13765 565 FLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWR 601 (606)
Q Consensus 565 ~L~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~ 601 (606)
+..+.|.++++++++.+++..++...+|++
T Consensus 221 -------~~~~~~~~~~~l~~~~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 221 -------PGTQVGLHLGALCLYAVVPFFISAALLRRR 250 (253)
T ss_pred -------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 011245678889999888888887776654
No 431
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.32 E-value=1.8e-10 Score=115.85 Aligned_cols=221 Identities=13% Similarity=0.043 Sum_probs=141.8
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHh-HHHHHHHHHHHHHHHHHHHHhhhhhhhh--hhheecccCCCc
Q psy13765 347 KRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLI-NYNLLFSILIHHVMTSMMLNILTFPMEM--SILIKEHFNRWY 423 (606)
Q Consensus 347 ~Rd~~~~~~r~~~~i~~all~G~~f~~~~~~~~~~~~-~~g~lf~~~~~~~~~~~~~~~~~f~~er--~v~~rE~~~~~Y 423 (606)
+|||.....-+.+.+++-++++.+|-+... ...... -.+.+-+... +.+.+........|| ..+.|=+..- .
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~er~~G~l~rl~~~P-~ 76 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSVT-HNRGATFIPVLMALAAI---STAFTGQAIAVARDRRYGALKRLGATP-L 76 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCccC-CcchhHhhHHHHHHHHH---HHHHHHHHHHHHHHHHhCHHHHHhcCC-C
Confidence 699999999899888887888877765211 111111 1121111111 111111122222333 3444444443 5
Q ss_pred chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhcccc----chhHHHHHH
Q psy13765 424 SLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFN----VVNGTFVGP 499 (606)
Q Consensus 424 ~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~~~----~~~a~~~~~ 499 (606)
+...|+++|.+...+..++..+++. +++++.|.+..... +.+++...+....+.+++.+++++.. .+.+..+.+
T Consensus 77 ~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 154 (232)
T TIGR00025 77 PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVAN 154 (232)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 7899999999988888777655554 55667788765333 33344444555666667777766642 223466778
Q ss_pred HHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccCCCccccCChhHHHhhcCCCCCChhhh
Q psy13765 500 VLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQPSDNFWSS 579 (606)
Q Consensus 500 ~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~~~c~~~~g~~~L~~~~~~~~~~w~~ 579 (606)
+...+++++||.+.|.+.+|.|++|+.+++|++|+.+++-....+ + -+....|.+
T Consensus 155 ~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~--~-----------------------~~~~~~~~~ 209 (232)
T TIGR00025 155 LVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATV--S-----------------------VDTFGAVRD 209 (232)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcC--C-----------------------CChhhHHHH
Confidence 888999999999999999999999999999999999987543222 1 012345778
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy13765 580 SVTLVFILIVMKLIAYFFLS 599 (606)
Q Consensus 580 ~~il~~~~~~~~~~~~~~L~ 599 (606)
+++++++.+++..++...++
T Consensus 210 ~~~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 210 LVVVLAFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88888888887777766554
No 432
>KOG0063|consensus
Probab=99.31 E-value=3e-12 Score=134.35 Aligned_cols=83 Identities=24% Similarity=0.334 Sum_probs=66.4
Q ss_pred ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee
Q psy13765 167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY 246 (606)
Q Consensus 167 ~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~ 246 (606)
++|.....+||||-||.+||++.+.+.++.++|||.+-||...+..-...++.+....+=||++.||.+ .+--+.|-+.
T Consensus 206 ~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLs-VLDylSDFiC 284 (592)
T KOG0063|consen 206 LLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLS-VLDYLSDFIC 284 (592)
T ss_pred HHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeech-HHHhhhccee
Confidence 344445555555555555666666679999999999999999999999999999888899999999987 4556788888
Q ss_pred eecC
Q psy13765 247 LLSG 250 (606)
Q Consensus 247 ~L~~ 250 (606)
.|.+
T Consensus 285 cLYG 288 (592)
T KOG0063|consen 285 CLYG 288 (592)
T ss_pred EEec
Confidence 8863
No 433
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.31 E-value=2.3e-12 Score=150.16 Aligned_cols=148 Identities=18% Similarity=0.269 Sum_probs=94.7
Q ss_pred eEEEe-CCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCC-CCCCCCcHHHHHHHcC
Q psy13765 56 CGRFP-SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDD-RLQPLLTIENVMSLLG 133 (606)
Q Consensus 56 s~~i~-~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~-~l~~~ltv~~~l~~~g 133 (606)
++.+. .++++.|.|||++||||+|+.++...--...| .+||-+. .-.+ -++++...+|
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G------------------~~vpa~~~~~i~--~~~~i~~~ig 379 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSG------------------LPIPANEPSEIP--VFKEIFADIG 379 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhC------------------CCcccCCCcccc--ccceEEEecC
Confidence 33443 46789999999999999999986431000011 1222211 0000 0112222334
Q ss_pred CccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHH
Q psy13765 134 LDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC 213 (606)
Q Consensus 134 l~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i 213 (606)
-........+.+|+|++|++.|++++ .+ |+++++|||++|+|+.....+
T Consensus 380 ~~~si~~~lStfS~~m~~~~~Il~~~-~~------------------------------~sLvLlDE~~~GtDp~eg~al 428 (782)
T PRK00409 380 DEQSIEQSLSTFSGHMTNIVRILEKA-DK------------------------------NSLVLFDELGAGTDPDEGAAL 428 (782)
T ss_pred CccchhhchhHHHHHHHHHHHHHHhC-Cc------------------------------CcEEEecCCCCCCCHHHHHHH
Confidence 44444456677999999999876665 33 999999999999999999888
Q ss_pred HH-HHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765 214 IK-LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256 (606)
Q Consensus 214 ~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~ 256 (606)
.. +++.+.+.|.++|++||++.. ....+|+..+. ++.+.+.
T Consensus 429 a~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~~~~~~d 470 (782)
T PRK00409 429 AISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-NASVEFD 470 (782)
T ss_pred HHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-EEEEEEe
Confidence 64 677787789999999999653 33344544433 4555553
No 434
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.30 E-value=4.7e-12 Score=126.21 Aligned_cols=135 Identities=16% Similarity=0.142 Sum_probs=86.6
Q ss_pred ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765 48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN 127 (606)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~ 127 (606)
++.+-+|+++..++|++++|.||||+||||+++.+++..--...| .....+. ..++++ +.++..+
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G------~~vpa~~--~~i~~~---~~i~~~~---- 80 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMG------MDVPAKS--MRLSLV---DRIFTRI---- 80 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcC------CccCccc--cEeccc---cEEEEec----
Confidence 356889999999999999999999999999999998852110011 1111111 111111 1111111
Q ss_pred HHHHcCCccccCCccccCC--hHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC
Q psy13765 128 VMSLLGLDESQNTRSSQLS--GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205 (606)
Q Consensus 128 ~l~~~gl~~~~~~~~~~lS--gGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL 205 (606)
+- .+....++| ..|-++++-..... ++|+++++|||.+|+
T Consensus 81 -----~~---~d~~~~~~StF~~e~~~~~~il~~~------------------------------~~~sLvLlDE~~~Gt 122 (218)
T cd03286 81 -----GA---RDDIMKGESTFMVELSETANILRHA------------------------------TPDSLVILDELGRGT 122 (218)
T ss_pred -----Cc---ccccccCcchHHHHHHHHHHHHHhC------------------------------CCCeEEEEecccCCC
Confidence 10 111112233 23455554332222 349999999999999
Q ss_pred CHHHHHHHHHH-HHHHHhC-CCEEEEEecCCc
Q psy13765 206 DSQSCSQCIKL-LKMISQQ-GRTIICTIHQPS 235 (606)
Q Consensus 206 D~~~~~~i~~~-l~~l~~~-g~tii~~~H~~~ 235 (606)
|+.....+... ++.+.+. +.++|++||+++
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 99999988888 7888776 899999999965
No 435
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.29 E-value=6e-10 Score=113.58 Aligned_cols=236 Identities=15% Similarity=0.131 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcCC-CC------Ch---HHHHhHHHHHHHHHHHHHHHHHH
Q psy13765 332 SNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNS-GE------YA---SSVLINYNLLFSILIHHVMTSMM 401 (606)
Q Consensus 332 ~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f~~~-~~------~~---~~~~~~~g~lf~~~~~~~~~~~~ 401 (606)
+++++.+++|+++...|||.....-+++.++.-+++|.+|-.. +. +. -..+--.|++-+...+..+.+..
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~~ 80 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSSL 80 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4688999999999999999999999999999999999988432 11 00 11112223322222222221111
Q ss_pred HHhhhhhhhhhhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy13765 402 LNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSV 481 (606)
Q Consensus 402 ~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~ 481 (606)
......|+..+.+=+... .+...+.++|.+...-..++..+++..+.+. .|.+.+...+.......++..++..++
T Consensus 81 --~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 81 --SMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred --HhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 111122222333323333 5778899999999988888776665555443 366555444444444556667778899
Q ss_pred HhHHhccccc-hhHHHHHHHHHHHHHHhcccccCCCCc---ccccccccccCHHHHHHHHHHHHHhcCCCcccccCCCcc
Q psy13765 482 GYMVGAVFNV-VNGTFVGPVLVVPMMMFSGFGVSINDI---PKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYC 557 (606)
Q Consensus 482 g~~i~~~~~~-~~a~~~~~~~~~~~~lf~G~~i~~~~i---p~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~~~c 557 (606)
|.++|++.+. ..+..+.++++.+++.+||.+.|.+.+ |+|++|+.++||+.|..|++-...++ +
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~~~g--~---------- 224 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFALYG--Q---------- 224 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHHHhC--C----------
Confidence 9999998754 446667778888999999999998766 88999999999999999977432221 0
Q ss_pred ccCChhHHHhhcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHh
Q psy13765 558 HYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSW 600 (606)
Q Consensus 558 ~~~~g~~~L~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~ 600 (606)
.-|..+++++++.+++..++....|+
T Consensus 225 -----------------~~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 225 -----------------LNLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred -----------------cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 01556677778888777777666543
No 436
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.26 E-value=1.1e-11 Score=132.98 Aligned_cols=61 Identities=23% Similarity=0.328 Sum_probs=55.6
Q ss_pred CCCCCchhhhHHHHHHhhhc---------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 172 TTSNPNDQKKRLSIALELIN---------NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 172 ~~~~s~g~~krl~IA~aL~~---------~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
...+|.||+|++.||.+|+. +|+||+||||+++||+..+..+++.|++. |.++++|+|++.
T Consensus 273 ~~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 273 EDFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 34589999999999999999 99999999999999999999999999753 779999999865
No 437
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.23 E-value=4.3e-11 Score=125.73 Aligned_cols=142 Identities=17% Similarity=0.149 Sum_probs=94.1
Q ss_pred eeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc-CChhhhcccEEEEccCCC-CCCCCcHHHHHHHc
Q psy13765 55 LCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSCYIQQDDR-LQPLLTIENVMSLL 132 (606)
Q Consensus 55 vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~-~~~~~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~ 132 (606)
+++.+++|+.++|.||+|||||||+++|++..++ ..|.+.++... ..... +..+..+.+... -....+.++
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~-~~~iv~ied~~El~~~~-~~~~~l~~~~~~~~~~~~~~~~----- 209 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPK-DERIITIEDTREIFLPH-PNYVHLFYSKGGQGLAKVTPKD----- 209 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCc-cccEEEEcCccccCCCC-CCEEEEEecCCCCCcCccCHHH-----
Confidence 4567889999999999999999999999999865 46777775421 11111 122333222110 000111111
Q ss_pred CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHH
Q psy13765 133 GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212 (606)
Q Consensus 133 gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~ 212 (606)
. ++.+|-.+|+++++|||.+ .+
T Consensus 210 ---------------------~------------------------------l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 210 ---------------------L------------------------------LQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred ---------------------H------------------------------HHHHhcCCCCeEEEeccCC-------HH
Confidence 1 2334445599999999996 34
Q ss_pred HHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 213 CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 213 i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
+.+.++.+...+.+++.|+|..+. .+..||+..|..|++...|.+.+..
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~~--~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGSP--EEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCCH--HHHHHHHHHHhhccccccCCCHHHH
Confidence 566677665323467999999873 4679999999999988888877665
No 438
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.22 E-value=1.9e-11 Score=107.74 Aligned_cols=72 Identities=15% Similarity=0.069 Sum_probs=56.4
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhhhcccEEEEccCCCCCCCCcH
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INAFRRVSCYIQQDDRLQPLLTI 125 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~~~~~~~yv~Q~~~l~~~ltv 125 (606)
+.+|+++++++++||+++|+||||||||||++++. +|++.++|.+.. ..+.++..++++|+ .++ .|+
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~~~~~~~~~~~~~~~~q~-lf~--~ti 71 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNVEIREDSKDELIGRNPEL-GLE--IRL 71 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHHHhhhhhcCCEEEEechh-cch--hhH
Confidence 46899999999999999999999999999999985 688999997642 34456667888887 322 355
Q ss_pred HHHHH
Q psy13765 126 ENVMS 130 (606)
Q Consensus 126 ~~~l~ 130 (606)
.+.+.
T Consensus 72 ~~Ni~ 76 (107)
T cd00820 72 RLNIF 76 (107)
T ss_pred Hhhce
Confidence 54443
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.21 E-value=3.5e-11 Score=116.28 Aligned_cols=149 Identities=15% Similarity=0.094 Sum_probs=90.3
Q ss_pred EEEECCCCCCHHHHHHHHhCC-CCCCCccEEEECCccCChhhhcccE-EEEccCCCCCCCCcHHHHHHHcCCccccCCcc
Q psy13765 65 IAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNGHSRNINAFRRVS-CYIQQDDRLQPLLTIENVMSLLGLDESQNTRS 142 (606)
Q Consensus 65 ~aIiGpsGaGKSTLL~~L~g~-~~~~~~G~I~~~G~~~~~~~~~~~~-~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~ 142 (606)
+.|.||+|+|||||.--++-. ...+ ..-+++.-. .+...+.+.. ++ ....++. ...|.....+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-~~v~~~s~e-~~~~~~~~~~~~~---------g~~~~~l-~~~g~l~~~d~~~ 69 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-EPGLYVTLE-ESPEELIENAESL---------GWDLERL-EDEGLLAIVDADP 69 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-CcEEEEECC-CCHHHHHHHHHHc---------CCChHHH-HhcCCeEEEecCc
Confidence 679999999999988654321 1211 122333221 1222221110 00 1112222 2334445556666
Q ss_pred ccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCC---HHHHHHHHHHHHH
Q psy13765 143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD---SQSCSQCIKLLKM 219 (606)
Q Consensus 143 ~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD---~~~~~~i~~~l~~ 219 (606)
..+|+|++|-.. +++ ....+.+...+|+++++||||+.+| ......+.+.++.
T Consensus 70 ~~~s~~~~~~~~---~~~---------------------~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~ 125 (187)
T cd01124 70 DEIGPAESSLRL---ELI---------------------QRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFA 125 (187)
T ss_pred cccchhhhhhhH---HHH---------------------HHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHH
Confidence 678888876100 000 0011222334699999999999999 8888888899999
Q ss_pred HHhCCCEEEEEecCCch--------HHHhhcceeeeec
Q psy13765 220 ISQQGRTIICTIHQPSA--------TLFQMFDQVYLLS 249 (606)
Q Consensus 220 l~~~g~tii~~~H~~~~--------~i~~~~D~v~~L~ 249 (606)
+++.|.|+|+++|+... .+..++|.++.|+
T Consensus 126 l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 126 LKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 98889999999998653 2567899999886
No 440
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.21 E-value=1.5e-10 Score=136.31 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=75.8
Q ss_pred cccCCCCCCCCchhhhHHHHHHh----------------------hhcCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHh
Q psy13765 166 MFLDEPTTSNPNDQKKRLSIALE----------------------LINNPRVMFLDEPTTGL-DSQSCSQCIKLLKMISQ 222 (606)
Q Consensus 166 ~~~de~~~~~s~g~~krl~IA~a----------------------L~~~P~lllLDEPTsgL-D~~~~~~i~~~l~~l~~ 222 (606)
.++|.+...+|.|+.+.+++... +..+|+++++|||+.+| |+..+..+.+.++++++
T Consensus 604 ~lfd~~~d~l~~~~~~~fdl~~Ll~~~~~~~~~vl~yl~~ri~~~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK 683 (818)
T PRK13830 604 QLLDAEEDGLALGAFQTFEIEELMNMGERNLVPVLTYLFRRIEKRLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK 683 (818)
T ss_pred eecCCCccccCccceEEEEhhhhhcCchhHHHHHHHHHHHHHHHhcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH
Confidence 36788888888765554444322 35799999999999999 79999999999999998
Q ss_pred CCCEEEEEecCCchHH--------HhhcceeeeecCCcEEEEcCh
Q psy13765 223 QGRTIICTIHQPSATL--------FQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 223 ~g~tii~~~H~~~~~i--------~~~~D~v~~L~~G~~~~~G~~ 259 (606)
.|.+++++||+++... .+.||+.++|.+|++...|+.
T Consensus 684 ~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 684 ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 8999999999987532 368999999999988766643
No 441
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.21 E-value=2e-11 Score=138.30 Aligned_cols=76 Identities=17% Similarity=0.345 Sum_probs=68.9
Q ss_pred CCCchhhhHHHHHHhhhcC----CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765 174 SNPNDQKKRLSIALELINN----PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 174 ~~s~g~~krl~IA~aL~~~----P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
.+||||++|+.||++++.. |+++++||||+|||+.++..+.+.|+++++ ++|||++||+|. +...||++++++
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l~ 516 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKVE 516 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEEE
Confidence 4799999999999999985 699999999999999999999999999975 899999999975 346899999998
Q ss_pred CCc
Q psy13765 250 GGQ 252 (606)
Q Consensus 250 ~G~ 252 (606)
+|.
T Consensus 517 k~~ 519 (563)
T TIGR00634 517 KEG 519 (563)
T ss_pred Ecc
Confidence 764
No 442
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.20 E-value=7.5e-11 Score=117.09 Aligned_cols=52 Identities=25% Similarity=0.387 Sum_probs=46.6
Q ss_pred CCCCCCch--hhhHHHHHHhhhcCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q psy13765 171 PTTSNPND--QKKRLSIALELINNPRVMFLDEPT-----TGLDSQSCSQCIKLLKMISQ 222 (606)
Q Consensus 171 ~~~~~s~g--~~krl~IA~aL~~~P~lllLDEPT-----sgLD~~~~~~i~~~l~~l~~ 222 (606)
+++..+|+ |+++++||++++.+|+++++|||| +|||+.+...+.+.++++++
T Consensus 147 e~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 147 DISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred EEeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 44555555 888999999999999999999999 99999999999999999875
No 443
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=4.8e-11 Score=144.39 Aligned_cols=90 Identities=23% Similarity=0.244 Sum_probs=71.0
Q ss_pred ccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhh----cCCcEEEEeCCCCCCCHHHHHH
Q psy13765 137 SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI----NNPRVMFLDEPTTGLDSQSCSQ 212 (606)
Q Consensus 137 ~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~----~~P~lllLDEPTsgLD~~~~~~ 212 (606)
..++.++.|||||++|+++|++|+.. ..+. .+|++||+||||+|||+.+...
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls------------------------~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~ 998 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALA------------------------DLLSTSGGTVLDSLFIDEGFGSLDEDSLDR 998 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHH------------------------HHHhhccCCCCCeEEecCCCCCCCHHHHHH
Confidence 34455667777777777776666531 0000 1599999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765 213 CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGG 251 (606)
Q Consensus 213 i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 251 (606)
+++.|+++++.|++|++|||++. ....++|+|.+++.|
T Consensus 999 ~~~~l~~l~~~g~~i~iisH~~~-~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 999 AIGILDAIREGSKMIGIISHVPE-FRERIPHRILVKKTN 1036 (1042)
T ss_pred HHHHHHHHHhCCCEEEEEeCcHH-HHHhhCCEEEEEECC
Confidence 99999999888999999999976 477899999999743
No 444
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.19 E-value=5.9e-11 Score=119.53 Aligned_cols=151 Identities=21% Similarity=0.235 Sum_probs=87.7
Q ss_pred EEeCCeEEEEECCCCCCHHHH-HHHHhCCCCCCCccEEEECCccCChhhhcc---cEEEEccCCCCCCCCcHHHHHHHcC
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSL-LDVLSGYRSNGVTGQILTNGHSRNINAFRR---VSCYIQQDDRLQPLLTIENVMSLLG 133 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTL-L~~L~g~~~~~~~G~I~~~G~~~~~~~~~~---~~~yv~Q~~~l~~~ltv~~~l~~~g 133 (606)
-+++|++++|.|||||||||| ++.+++...++ ...+++..... ..++.+ ..|+- +++.... +
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~~-~~~~~~~~~~~g~~-----------~~~~~~~-~ 85 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQLT-TTEFIKQMMSLGYD-----------INKKLIS-G 85 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCCC-HHHHHHHHHHhCCc-----------hHHHhhc-C
Confidence 389999999999999999999 78988865433 34445543321 112111 11210 1111110 0
Q ss_pred CccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC----CHHH
Q psy13765 134 LDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL----DSQS 209 (606)
Q Consensus 134 l~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL----D~~~ 209 (606)
.-...+.. ..+|+++.++..+.+. +.. +=..+|+++++||||+++ |+..
T Consensus 86 ~l~~~~~~-~~~~~~~~~~~~l~~i-l~~-------------------------~~~~~~~~lVIDe~t~~l~~~~d~~~ 138 (230)
T PRK08533 86 KLLYIPVY-PLLSGNSEKRKFLKKL-MNT-------------------------RRFYEKDVIIIDSLSSLISNDASEVA 138 (230)
T ss_pred cEEEEEec-ccccChHHHHHHHHHH-HHH-------------------------HHhcCCCEEEEECccHHhcCCcchHH
Confidence 00000111 1245555444333221 111 001359999999999999 7788
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCch------HHHhhcceeeeec
Q psy13765 210 CSQCIKLLKMISQQGRTIICTIHQPSA------TLFQMFDQVYLLS 249 (606)
Q Consensus 210 ~~~i~~~l~~l~~~g~tii~~~H~~~~------~i~~~~D~v~~L~ 249 (606)
..++.+.+++++++|.|+++++|+... .+..++|-++.|+
T Consensus 139 ~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 139 VNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 888999999998888888776654321 1234567787776
No 445
>PRK13695 putative NTPase; Provisional
Probab=99.17 E-value=4.5e-11 Score=114.96 Aligned_cols=65 Identities=14% Similarity=0.295 Sum_probs=48.4
Q ss_pred hhhcCCcEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 188 ELINNPRVMFLDEP--TTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 188 aL~~~P~lllLDEP--TsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
..+.+|+++++||| +.++| ..+.+.+.++.+.|.++|+++|+. .+...+|++..+.+|++.+.-+
T Consensus 92 ~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~~~i~~~~~ 158 (174)
T PRK13695 92 RALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPGGRVYELTP 158 (174)
T ss_pred hccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCCcEEEEEcc
Confidence 33344999999995 44444 345666666666799999999983 3557899999999999877643
No 446
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.15 E-value=5e-11 Score=135.16 Aligned_cols=80 Identities=20% Similarity=0.305 Sum_probs=70.4
Q ss_pred CCCCCCCchhhhHHHHHHhhh----------cCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q psy13765 170 EPTTSNPNDQKKRLSIALELI----------NNPRVMFLDEPT-TGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238 (606)
Q Consensus 170 e~~~~~s~g~~krl~IA~aL~----------~~P~lllLDEPT-sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i 238 (606)
.+...+|+|||||+.||++|+ .+|++++||||| ++||+.+...+.+.|+++ +|.|||++||++. +
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~ 539 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--D 539 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--c
Confidence 355789999999999999987 599999999998 789999999999999998 5899999999965 4
Q ss_pred HhhcceeeeecC-CcE
Q psy13765 239 FQMFDQVYLLSG-GQC 253 (606)
Q Consensus 239 ~~~~D~v~~L~~-G~~ 253 (606)
...+|++++|.+ |+.
T Consensus 540 ~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 540 PQKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhhcEEEEEEECCe
Confidence 578999999975 654
No 447
>PRK10869 recombination and repair protein; Provisional
Probab=99.15 E-value=6.9e-11 Score=133.18 Aligned_cols=74 Identities=19% Similarity=0.424 Sum_probs=67.8
Q ss_pred CCchhhhHHHHHHhhhc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 175 NPNDQKKRLSIALELIN----NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~----~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
+||||++|++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+|. +...+|+.+.+.+
T Consensus 431 lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~k 507 (553)
T PRK10869 431 ASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVSK 507 (553)
T ss_pred CCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEec
Confidence 69999999999999997 6899999999999999999999999999975 699999999986 4589999999986
Q ss_pred C
Q psy13765 251 G 251 (606)
Q Consensus 251 G 251 (606)
+
T Consensus 508 ~ 508 (553)
T PRK10869 508 E 508 (553)
T ss_pred c
Confidence 4
No 448
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.15 E-value=1.2e-10 Score=108.80 Aligned_cols=53 Identities=26% Similarity=0.322 Sum_probs=39.0
Q ss_pred HHHhhhcCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q psy13765 185 IALELINNPRVMFLDEPTT----------GLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT 237 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTs----------gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~ 237 (606)
.+.+...+|+++++|||++ +.|......+.+++....+.+.|+|+++|.+...
T Consensus 78 ~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 78 ERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 3444445599999999994 5555656677777666666699999999987643
No 449
>PRK15066 inner membrane transport permease; Provisional
Probab=99.13 E-value=1.4e-08 Score=103.94 Aligned_cols=242 Identities=15% Similarity=0.166 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHHHHHhhcChhHH-HHHHHHHHHHHHHHHHhhcCC-CC--Ch-HHHHhHHHHHHHHHHHHHHHHHHHHhh
Q psy13765 331 YSNQLGVLLSRGLLKVKRDSTLT-HLRIIVNIFVALMLGVLFQNS-GE--YA-SSVLINYNLLFSILIHHVMTSMMLNIL 405 (606)
Q Consensus 331 ~~~q~~~l~~R~~~~~~Rd~~~~-~~r~~~~i~~all~G~~f~~~-~~--~~-~~~~~~~g~lf~~~~~~~~~~~~~~~~ 405 (606)
.++-++.+.+|+.+...||+... ..-+++.++..+++|.++-.. +. +. --..--.|.+-+.....+... ...
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~---~~~ 82 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSN---VAS 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 36778899999999999998653 333444555666666655321 11 11 111111233322222222221 112
Q ss_pred hhhhhh--hhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHh
Q psy13765 406 TFPMEM--SILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGY 483 (606)
Q Consensus 406 ~f~~er--~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~ 483 (606)
.+..++ ....|=... -.+...+.+++.+...-..++..++...+.+...|.+.. ....+....++........|.
T Consensus 83 ~i~~~~~~~~~~~l~vt-p~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl 159 (257)
T PRK15066 83 SFFSAKFQRNIEELLVS-PVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGL 159 (257)
T ss_pred HHHHHHHhhhHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHH
Confidence 222222 111111112 257778999999988777676666665555544466543 222233333333333334477
Q ss_pred HHhccccc-hhHHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccCCCccccCCh
Q psy13765 484 MVGAVFNV-VNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEP 562 (606)
Q Consensus 484 ~i~~~~~~-~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~~~c~~~~g 562 (606)
++|...+. .....+.++++.|++..||.+.|.+++|+|++|+.++||+.|..|++=...++ .
T Consensus 160 ~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g--~--------------- 222 (257)
T PRK15066 160 INAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLG--I--------------- 222 (257)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcC--C---------------
Confidence 77776554 44666778888999999999999999999999999999999999987533322 0
Q ss_pred hHHHhhcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy13765 563 KKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIKV 604 (606)
Q Consensus 563 ~~~L~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~~~ 604 (606)
.....|.++++++++.+++.+++...+|++.+-
T Consensus 223 ---------~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~~ 255 (257)
T PRK15066 223 ---------SDVPLWLAFAVLLVFIVVLYLLAWYLLERGRGL 255 (257)
T ss_pred ---------CCccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 112357788999999999988888887765543
No 450
>PRK03918 chromosome segregation protein; Provisional
Probab=99.12 E-value=1.3e-10 Score=138.59 Aligned_cols=85 Identities=28% Similarity=0.391 Sum_probs=74.0
Q ss_pred CCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q psy13765 139 NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK 218 (606)
Q Consensus 139 ~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~ 218 (606)
+..+..|||||++++++|+ |+++|++++.+|+++++||||+|||+..+..+.++|+
T Consensus 783 ~~~~~~lS~G~~~~~~la~------------------------rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~ 838 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAF------------------------RLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIME 838 (880)
T ss_pred cCChhhCCHhHHHHHHHHH------------------------HHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHH
Confidence 4556778999999888775 3457888888999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765 219 MISQQGRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 219 ~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
.+++.+.|||++||++. +...||++++|.
T Consensus 839 ~~~~~~~~iiiith~~~--~~~~~d~~~~l~ 867 (880)
T PRK03918 839 RYLRKIPQVIIVSHDEE--LKDAADYVIRVS 867 (880)
T ss_pred HHHhcCCEEEEEECCHH--HHHhCCeEEEEE
Confidence 98777889999999964 568999999997
No 451
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.11 E-value=4.7e-10 Score=126.20 Aligned_cols=97 Identities=22% Similarity=0.411 Sum_probs=82.0
Q ss_pred cccCCCCCCCCchhhhHHHHHHhhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765 166 MFLDEPTTSNPNDQKKRLSIALELINNP--RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD 243 (606)
Q Consensus 166 ~~~de~~~~~s~g~~krl~IA~aL~~~P--~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 243 (606)
+-+|.....|||||.||+.+|+.+-++= -+.+||||+.||-+..-.++++.|++|++.|-|+|++.||++ ..+.+|
T Consensus 473 LtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD 550 (935)
T COG0178 473 LTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAAD 550 (935)
T ss_pred ccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcC
Confidence 3556777777777777777777776553 367999999999999999999999999999999999999954 568999
Q ss_pred eeeee------cCCcEEEEcChhHHHH
Q psy13765 244 QVYLL------SGGQCLYQGATDQLVN 264 (606)
Q Consensus 244 ~v~~L------~~G~~~~~G~~~~~~~ 264 (606)
+|+=| .+|++++.|+++++++
T Consensus 551 ~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 551 HIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred EEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 99998 3689999999999885
No 452
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.08 E-value=4.9e-10 Score=121.52 Aligned_cols=158 Identities=18% Similarity=0.182 Sum_probs=105.5
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHH
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENV 128 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~ 128 (606)
.++++++ +.+.+||.++|+|+||+|||||+++|+|...+ ..|.|.+.|+... ++.+.
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-~~gvI~~iGerg~---------------------ev~e~ 200 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKA-DINVISLVGERGR---------------------EVKDF 200 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCC-CeEEEEeCCCCcc---------------------cHHHH
Confidence 4578885 99999999999999999999999999998765 4788877775421 22222
Q ss_pred HH-Hc---CCccc-cCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCC
Q psy13765 129 MS-LL---GLDES-QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203 (606)
Q Consensus 129 l~-~~---gl~~~-~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTs 203 (606)
++ .+ |+... .=....+-|.|+|+|+..+...++. .+.| -.++-++++||||+
T Consensus 201 ~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAE---yfr~--------------------~G~~VLlilDslTr 257 (432)
T PRK06793 201 IRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAE---YFRD--------------------QGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHH---HHHH--------------------cCCcEEEEecchHH
Confidence 21 11 22110 0012345788999988765544421 0000 13489999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 204 GLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 204 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
+.|+. .++-..+.+.-..|.+..+.+|. + ++++|.-...+|.+...+..
T Consensus 258 ~a~A~--reisl~~~e~p~~G~~~~~~s~l-~----~L~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 258 FADAR--RSVDIAVKELPIGGKTLLMESYM-K----KLLERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHH--HHHHHHhcCCCCCCeeeeeeccc-h----hHHHHhccCCCcceEEEEEE
Confidence 99996 55555566655458888888884 2 34556555678988777654
No 453
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.06 E-value=3.3e-10 Score=112.26 Aligned_cols=61 Identities=28% Similarity=0.423 Sum_probs=48.3
Q ss_pred CCchhhhHHHHHHhhhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 175 NPNDQKKRLSIALELINNP---RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P---~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
+|-|+||.+.++..+...+ .++++|||-++|+|..+..+++.|+++++.+.-+|+|||.|.
T Consensus 237 ~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 237 LSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp --HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred CCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 3556666655555555555 899999999999999999999999888776889999999975
No 454
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.05 E-value=7.6e-10 Score=105.39 Aligned_cols=43 Identities=26% Similarity=0.489 Sum_probs=41.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
.-+.+||||-++|.+.-+.+++..|+++++.|.-+|+.||.|-
T Consensus 147 ~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 147 QGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred CceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 6899999999999999999999999999999999999999975
No 455
>PRK01156 chromosome segregation protein; Provisional
Probab=99.04 E-value=6.4e-10 Score=132.94 Aligned_cols=83 Identities=27% Similarity=0.418 Sum_probs=70.7
Q ss_pred ccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy13765 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMI 220 (606)
Q Consensus 141 ~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l 220 (606)
.+..|||||++|+++|. |++||++++.+|++++|||||+|||+.....+.++++..
T Consensus 798 ~~~~lS~G~~~~~~la~------------------------rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~ 853 (895)
T PRK01156 798 GIDSLSGGEKTAVAFAL------------------------RVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYS 853 (895)
T ss_pred ccccCCHhHHHHHHHHH------------------------HHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 45679999999998775 556899999999999999999999999999999999865
Q ss_pred H-hC-C-CEEEEEecCCchHHHhhcceeeeec
Q psy13765 221 S-QQ-G-RTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 221 ~-~~-g-~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
. .. | .|+|++||++. ....||+++.+.
T Consensus 854 ~~~~~~~~~ii~ish~~~--~~~~~d~ii~~~ 883 (895)
T PRK01156 854 LKDSSDIPQVIMISHHRE--LLSVADVAYEVK 883 (895)
T ss_pred HHhcCCCCeEEEEECchH--HHHhcCeEEEEE
Confidence 4 33 3 48999999975 347999999996
No 456
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.04 E-value=1.1e-09 Score=107.79 Aligned_cols=120 Identities=24% Similarity=0.405 Sum_probs=73.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccc
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSS 143 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~ 143 (606)
++.|.||+||||||+++.|.+...+...|.|...+.+... ......+++.|.+. |.+ ..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~-~~~~~~~~i~q~~v--------------g~~------~~ 61 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEF-VHESKRSLINQREV--------------GLD------TL 61 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccc-cccCccceeeeccc--------------CCC------cc
Confidence 7899999999999999999887654335676655443321 11111223333211 000 00
Q ss_pred cCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy13765 144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ 223 (606)
Q Consensus 144 ~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~ 223 (606)
.++. + |+++|..+|+++++|||. |..+...+ .+.+..
T Consensus 62 ~~~~------~------------------------------i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~ 98 (198)
T cd01131 62 SFEN------A------------------------------LKAALRQDPDVILVGEMR---DLETIRLA----LTAAET 98 (198)
T ss_pred CHHH------H------------------------------HHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHc
Confidence 1110 1 444555569999999996 55543333 344567
Q ss_pred CCEEEEEecCCchHHHhhcceeeeec
Q psy13765 224 GRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 224 g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
|..++.|+|.++. .+..||++.+.
T Consensus 99 G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 99 GHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred CCEEEEEecCCcH--HHHHhHHHhhc
Confidence 9999999999864 46789987774
No 457
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.94 E-value=1.7e-09 Score=130.67 Aligned_cols=80 Identities=23% Similarity=0.212 Sum_probs=59.8
Q ss_pred CCCCCCCchhhhHHHHHHhhhc--------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q psy13765 170 EPTTSNPNDQKKRLSIALELIN--------NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM 241 (606)
Q Consensus 170 e~~~~~s~g~~krl~IA~aL~~--------~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~ 241 (606)
.++..|||||+++++||+||+. +|++||+||||+|||+.+...+++.|..+++.|+||++|||... ..-++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhc
Confidence 3444455555555555555553 69999999999999999999999999999988999999999743 34455
Q ss_pred cceeeeecC
Q psy13765 242 FDQVYLLSG 250 (606)
Q Consensus 242 ~D~v~~L~~ 250 (606)
-.+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 555555543
No 458
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.93 E-value=5.2e-09 Score=105.47 Aligned_cols=157 Identities=20% Similarity=0.211 Sum_probs=87.6
Q ss_pred cceee-eEEEeCCeEEEEECCCCCCHHHHHHHHh-CCCCCCCccEEEECCccCChhhhcc---cEEEEccCCCCCCCCcH
Q psy13765 51 VLKNL-CGRFPSNQLIAIMGPSGAGKSSLLDVLS-GYRSNGVTGQILTNGHSRNINAFRR---VSCYIQQDDRLQPLLTI 125 (606)
Q Consensus 51 iL~~v-s~~i~~Ge~~aIiGpsGaGKSTLL~~L~-g~~~~~~~G~I~~~G~~~~~~~~~~---~~~yv~Q~~~l~~~ltv 125 (606)
-|+.+ .+-+++|+++.|.|++|+|||||...++ +.... .+.+.+-..+.+..++.+ ..++ .+
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~~~~~~~~~~~~g~-----------~~ 79 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENTSKSYLKQMESVKI-----------DI 79 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCCHHHHHHHHHHCCC-----------Ch
Confidence 45554 5569999999999999999999998874 22121 233333332222222211 1111 01
Q ss_pred HHHHHHcCCccccC---CccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCC
Q psy13765 126 ENVMSLLGLDESQN---TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202 (606)
Q Consensus 126 ~~~l~~~gl~~~~~---~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPT 202 (606)
++.+.. |.....+ ......+.++++.+....+++.. .+|+++++||||
T Consensus 80 ~~~~~~-g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~----------------------------~~~~~iviDs~t 130 (234)
T PRK06067 80 SDFFLW-GYLRIFPLNTEGFEWNSTLANKLLELIIEFIKS----------------------------KREDVIIIDSLT 130 (234)
T ss_pred hHHHhC-CCceEEeccccccccCcchHHHHHHHHHHHHHh----------------------------cCCCEEEEecHH
Confidence 111000 0000000 01112344555555554444432 159999999999
Q ss_pred CC---CCHHHHHHHHHHHHHHHhCCCEEEEEecCCch------HHHhhcceeeeec
Q psy13765 203 TG---LDSQSCSQCIKLLKMISQQGRTIICTIHQPSA------TLFQMFDQVYLLS 249 (606)
Q Consensus 203 sg---LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~------~i~~~~D~v~~L~ 249 (606)
+. .|.....++++.++.++++|.|+++++|+... .+..++|-++.|+
T Consensus 131 ~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 131 IFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 65 44555555666677777789999999998653 1345667776665
No 459
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.84 E-value=1.7e-08 Score=107.68 Aligned_cols=125 Identities=26% Similarity=0.392 Sum_probs=77.9
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCcccc
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQ 138 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~ 138 (606)
.+++.++.|.||+||||||++++|.+.......|.|...+.+.... .......+.|.+. |..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~-~~~~~~~i~q~ev--------------g~~--- 180 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV-HRNKRSLINQREV--------------GLD--- 180 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh-ccCccceEEcccc--------------CCC---
Confidence 3578899999999999999999998865533357776655443211 1111112222110 000
Q ss_pred CCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q psy13765 139 NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK 218 (606)
Q Consensus 139 ~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~ 218 (606)
..+- . -+ ++++|-.+|+++++||+. |+.++...++
T Consensus 181 -----~~~~---~-~~------------------------------l~~~lr~~pd~i~vgEir---d~~~~~~~l~--- 215 (343)
T TIGR01420 181 -----TLSF---A-NA------------------------------LRAALREDPDVILIGEMR---DLETVELALT--- 215 (343)
T ss_pred -----CcCH---H-HH------------------------------HHHhhccCCCEEEEeCCC---CHHHHHHHHH---
Confidence 0010 0 01 344555569999999997 8887765444
Q ss_pred HHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765 219 MISQQGRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 219 ~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
.+..|.+++.|+|..+. ....||++-|-
T Consensus 216 -aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~~ 243 (343)
T TIGR01420 216 -AAETGHLVFGTLHTNSA--AQTIERIIDVF 243 (343)
T ss_pred -HHHcCCcEEEEEcCCCH--HHHHHHHHHhc
Confidence 35679999999999764 36788887663
No 460
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.82 E-value=2.2e-07 Score=94.39 Aligned_cols=153 Identities=20% Similarity=0.294 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHhc-ccc-chhHHHHHHHHHH
Q psy13765 426 KAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGA-VFN-VVNGTFVGPVLVV 503 (606)
Q Consensus 426 ~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~-~~~-~~~a~~~~~~~~~ 503 (606)
..+++++.+...-...+...+...+..+..|. .....+..+..+..+......++|.++++ ..+ ...+..+..++..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 209 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL 209 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56677777777766666666666666666662 23345666666777777788888886662 333 4447778888899
Q ss_pred HHHHhcccccCCCCcccccccccccCHHHHHHHHHHHHHhcCCCcccccCCCccccCChhHHHhhcCCCCCChhhhHHHH
Q psy13765 504 PMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQPSDNFWSSSVTL 583 (606)
Q Consensus 504 ~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~~~c~~~~g~~~L~~~~~~~~~~w~~~~il 583 (606)
++..++|.+.|.+.+|.|++|+.+++|.+|+.+++-....+... ..+.|.+++++
T Consensus 210 ~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l 264 (286)
T COG0842 210 PLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR-------------------------NDGIWISLLIL 264 (286)
T ss_pred HHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc-------------------------hhhHHHHHHHH
Confidence 99999999999999999999999999999999988655443110 12278889999
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q psy13765 584 VFILIVMKLIAYFFLSWRIKV 604 (606)
Q Consensus 584 ~~~~~~~~~~~~~~L~~~~~~ 604 (606)
+++.+++.+++...++++.++
T Consensus 265 ~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 265 LLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999998877664
No 461
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.82 E-value=1.3e-07 Score=84.77 Aligned_cols=117 Identities=27% Similarity=0.320 Sum_probs=72.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh-hcccEEEEccCCCCCCCCcHHHHHHHcCCccccC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA-FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN 139 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~ 139 (606)
+|+.+.|.||+|+||||+++.|+........+-+.++........ .... .....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~ 55 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-------------------------LIIVG 55 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-------------------------hhhhh
Confidence 467899999999999999999999865421245666554321110 0000 01111
Q ss_pred CccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHH----
Q psy13765 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK---- 215 (606)
Q Consensus 140 ~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~---- 215 (606)
.......+++..+..++.+-..+ |+++++||+..-.+.........
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~viiiDei~~~~~~~~~~~~~~~~~~ 105 (148)
T smart00382 56 GKKASGSGELRLRLALALARKLK------------------------------PDVLILDEITSLLDAEQEALLLLLEEL 105 (148)
T ss_pred ccCCCCCHHHHHHHHHHHHHhcC------------------------------CCEEEEECCcccCCHHHHHHHHhhhhh
Confidence 11223455555554444333333 89999999999999888877664
Q ss_pred --HHHHHHhCCCEEEEEec
Q psy13765 216 --LLKMISQQGRTIICTIH 232 (606)
Q Consensus 216 --~l~~l~~~g~tii~~~H 232 (606)
........+..+|+++|
T Consensus 106 ~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 106 RLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHHhcCCCEEEEEeC
Confidence 22223335788999998
No 462
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.80 E-value=6.9e-09 Score=128.33 Aligned_cols=69 Identities=25% Similarity=0.257 Sum_probs=56.6
Q ss_pred CCCCchhhh------HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCchHHHhh
Q psy13765 173 TSNPNDQKK------RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-----QGRTIICTIHQPSATLFQM 241 (606)
Q Consensus 173 ~~~s~g~~k------rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-----~g~tii~~~H~~~~~i~~~ 241 (606)
+.+|+|||+ |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. .|.|||++||++. .+..+
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHH
Confidence 456666666 77778888888999999999999999999999999988742 3789999999976 45555
Q ss_pred c
Q psy13765 242 F 242 (606)
Q Consensus 242 ~ 242 (606)
|
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 4
No 463
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.80 E-value=4e-09 Score=114.49 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=44.6
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN 102 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~ 102 (606)
+.+|++||+++++||+++|+|||||||||||+ +|+..+...|+|.++|.+..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 67666543348999998653
No 464
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.80 E-value=1.2e-07 Score=112.45 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=55.3
Q ss_pred HHHhhhcCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh--hcceeeeecCCcEE
Q psy13765 185 IALELINNPRVMFLDEPTTGL-DSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ--MFDQVYLLSGGQCL 254 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgL-D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~--~~D~v~~L~~G~~~ 254 (606)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++. +.+ .++.++-..+.++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD-AANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhCchHHHHHHcCCccee
Confidence 678889999999999999999 7999999999999999889999999999875 433 33444333444444
No 465
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.78 E-value=7.7e-09 Score=126.54 Aligned_cols=75 Identities=23% Similarity=0.325 Sum_probs=57.7
Q ss_pred CCCCCchhhhHHHHHHhh----hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeee
Q psy13765 172 TTSNPNDQKKRLSIALEL----INNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYL 247 (606)
Q Consensus 172 ~~~~s~g~~krl~IA~aL----~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 247 (606)
...+|||||+|++||+++ ...|++++|||||+|||+.+...+.++|+.+++ +.++|++||++.. ...||+++.
T Consensus 1087 ~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~~ 1163 (1179)
T TIGR02168 1087 LSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLYG 1163 (1179)
T ss_pred ccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHee
Confidence 334444444444455554 245899999999999999999999999999865 4789999999773 478999986
Q ss_pred ec
Q psy13765 248 LS 249 (606)
Q Consensus 248 L~ 249 (606)
+.
T Consensus 1164 ~~ 1165 (1179)
T TIGR02168 1164 VT 1165 (1179)
T ss_pred ee
Confidence 64
No 466
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.76 E-value=2.7e-08 Score=100.66 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=38.9
Q ss_pred hcCCcEEEEeCCCC------CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q psy13765 190 INNPRVMFLDEPTT------GLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPS 235 (606)
Q Consensus 190 ~~~P~lllLDEPTs------gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~ 235 (606)
..+|+++++| |++ .+|+.....+++.|++++++ |.||+++.|...
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 5789999999 765 47999999999999999875 999999999864
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.72 E-value=1e-07 Score=92.75 Aligned_cols=131 Identities=19% Similarity=0.218 Sum_probs=83.1
Q ss_pred cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCC--CCCCCcHHHH
Q psy13765 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDR--LQPLLTIENV 128 (606)
Q Consensus 51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~--l~~~ltv~~~ 128 (606)
..+=+.+.+++|+.++|+||||||||||+++|+|+.++ ..|.|.+++...-....+..++++.|.+. ..+..+..+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~-~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPP-DERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADL 92 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHH
Confidence 34445567899999999999999999999999999875 58999997743211112344566555432 2333343332
Q ss_pred HHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHH
Q psy13765 129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQ 208 (606)
Q Consensus 129 l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~ 208 (606)
++ .++-.+|+.++++|--. +.
T Consensus 93 l~--------------------------------------------------------~~lR~~pd~i~igEir~---~e 113 (186)
T cd01130 93 LR--------------------------------------------------------SALRMRPDRIIVGEVRG---GE 113 (186)
T ss_pred HH--------------------------------------------------------HHhccCCCEEEEEccCc---HH
Confidence 21 12223399999999753 33
Q ss_pred HHHHHHHHHHHHHhCCCE-EEEEecCCchHHHhhcceeeee
Q psy13765 209 SCSQCIKLLKMISQQGRT-IICTIHQPSATLFQMFDQVYLL 248 (606)
Q Consensus 209 ~~~~i~~~l~~l~~~g~t-ii~~~H~~~~~i~~~~D~v~~L 248 (606)
+ .+.++ .+..|.. ++.|.|-.+. .+..+|+.-+
T Consensus 114 -a---~~~~~-a~~tGh~g~~~T~Ha~s~--~~~~~Rl~~~ 147 (186)
T cd01130 114 -A---LDLLQ-AMNTGHPGGMTTIHANSA--EEALTRLELL 147 (186)
T ss_pred -H---HHHHH-HHhcCCCCceeeecCCCH--HHHHHHHHHH
Confidence 2 23343 3456877 8999998653 3555666543
No 468
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.72 E-value=1.3e-07 Score=103.46 Aligned_cols=169 Identities=22% Similarity=0.265 Sum_probs=107.9
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-hh----------hhcccEEEEccCC
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-IN----------AFRRVSCYIQQDD 117 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-~~----------~~~~~~~yv~Q~~ 117 (606)
..+++++ +.+.+||.++|+|+||+|||||+++|+|...+ ..|.+...|..-+ .. .+++.+.++.+.+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~-~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d 228 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEA-DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD 228 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCC-CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence 5689999 99999999999999999999999999998765 3566666554211 11 1222233333322
Q ss_pred CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH-----HHHHHhc-CCccc-ccCCCCCCCCchhhhHHHHHHhhh
Q psy13765 118 RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS-----IALELIN-NPRVM-FLDEPTTSNPNDQKKRLSIALELI 190 (606)
Q Consensus 118 ~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~-----ia~~L~~-~~~~~-~~de~~~~~s~g~~krl~IA~aL~ 190 (606)
. |-++|.+.. +|.-+.. .-+|+ ++|.-+.. =|.+| +|+
T Consensus 229 ~---------------------------~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~---A~A~R-Eis---- 273 (440)
T TIGR01026 229 Q---------------------------SPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRF---AMAQR-EIG---- 273 (440)
T ss_pred C---------------------------CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHH---HHHHH-HHH----
Confidence 2 223333221 2222211 11222 33433321 00011 111
Q ss_pred cCCcEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCC-------EEEEEecCCchHHHhhcceeeeecCCcEEEEcChhH
Q psy13765 191 NNPRVMFLDEP--TTGLDSQSCSQCIKLLKMISQQGR-------TIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261 (606)
Q Consensus 191 ~~P~lllLDEP--TsgLD~~~~~~i~~~l~~l~~~g~-------tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~ 261 (606)
+.+.|| +.|+|+.....+-+++.+....+. ||++..||..+ .++|++.-+.+|+++...+..+
T Consensus 274 -----l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 274 -----LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred -----HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhh
Confidence 235665 459999999999999999887667 88889999753 5789999999999999998765
Q ss_pred H
Q psy13765 262 L 262 (606)
Q Consensus 262 ~ 262 (606)
.
T Consensus 346 ~ 346 (440)
T TIGR01026 346 R 346 (440)
T ss_pred C
Confidence 4
No 469
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.68 E-value=1.3e-07 Score=89.08 Aligned_cols=131 Identities=8% Similarity=-0.041 Sum_probs=93.6
Q ss_pred hhhhhhhheecccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCCCch--HHHHHHHHHHHHHHHHHHHHHhH
Q psy13765 407 FPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMEL--TRFTMFNCTSLLVVFIAQSVGYM 484 (606)
Q Consensus 407 f~~er~v~~rE~~~~~Y~~~~y~la~~~~elP~~~~~~~~f~~i~Y~l~gl~~~~--~~f~~f~~~~~l~~~~~~~~g~~ 484 (606)
...|+-.+.|-+..- .+.+.|+++|.+...-..+++.++..++.+. .|.+... ...+.++++..+.......++..
T Consensus 14 ~dr~~G~~~~l~~tP-~~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 14 IDREIGLLSRLWVLP-IHRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHHhHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777776665 5788999999999999999988887777754 4877653 12222333333334444445555
Q ss_pred HhccccchhHHHHHHHHHHHHHHhcccccCCCCcccccccccccCHHHHHHHHHH
Q psy13765 485 VGAVFNVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEGYV 539 (606)
Q Consensus 485 i~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~iS~~~y~~eal~ 539 (606)
++...+...+.....++..|++..||.+.|.+++|+|++|+.+++|++|+.|++=
T Consensus 92 ~a~~~~~~~~~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 92 MALRKEGRFAMEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 5444455444444566788889999999999999999999999999999999874
No 470
>PRK02224 chromosome segregation protein; Provisional
Probab=98.67 E-value=3.9e-08 Score=117.51 Aligned_cols=67 Identities=28% Similarity=0.361 Sum_probs=54.7
Q ss_pred HHHHHHhhhcC-----C-cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEecCCchHHHhhcceeeeecC
Q psy13765 182 RLSIALELINN-----P-RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR-TIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 182 rl~IA~aL~~~-----P-~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~-tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
|+++|++++.+ | +++++||||++||+.....+.++|+++...|. +||++||++.. ...+|+++.+.+
T Consensus 795 r~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~--~~~ad~~~~~~~ 868 (880)
T PRK02224 795 RCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDEL--VGAADDLVRVEK 868 (880)
T ss_pred HHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHH--HHhcCeeEEeec
Confidence 44566666542 2 67999999999999999999999999987664 89999999763 468999999964
No 471
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.67 E-value=1.5e-09 Score=120.92 Aligned_cols=159 Identities=17% Similarity=0.154 Sum_probs=92.1
Q ss_pred cceee-eEEEeCCeEEEEECCCCCCHHHHHHHH--hCCCCCCCccEEEECCccCChhhh---cccEEEEccCCC----C-
Q psy13765 51 VLKNL-CGRFPSNQLIAIMGPSGAGKSSLLDVL--SGYRSNGVTGQILTNGHSRNINAF---RRVSCYIQQDDR----L- 119 (606)
Q Consensus 51 iL~~v-s~~i~~Ge~~aIiGpsGaGKSTLL~~L--~g~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~~~----l- 119 (606)
-|+.+ .+=+.+|..+.|.||+|||||||..-. .|....+ +.-+++...+. .+++ .+..|+-.++.. +
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g-e~~lyvs~eE~-~~~l~~~~~~~G~~~~~~~~~g~l~ 86 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD-EPGVFVTFEES-PQDIIKNARSFGWDLQKLVDEGKLF 86 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEEEEecC-HHHHHHHHHHcCCCHHHHhhcCceE
Confidence 46664 567999999999999999999999865 3543322 34455554321 2222 223344333211 0
Q ss_pred ----CCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcE
Q psy13765 120 ----QPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRV 195 (606)
Q Consensus 120 ----~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~l 195 (606)
.+.....++++.+++++..+.....+|+|++||+.|+.. .+|..+|+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl----------------------------~aL~~~~~~ 138 (484)
T TIGR02655 87 ILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV----------------------------TAVFQQYDA 138 (484)
T ss_pred EEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh----------------------------hHhhhhcCc
Confidence 000001112233344444444445556666665554410 233232332
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH-------H-Hhhcceeeeec
Q psy13765 196 MFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT-------L-FQMFDQVYLLS 249 (606)
Q Consensus 196 llLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~-------i-~~~~D~v~~L~ 249 (606)
. ...+..+.++++.+++.|.|+|+++|++... + ..++|.|+.|+
T Consensus 139 ~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 139 V----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred h----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 2 4677888999999988899999999986521 1 45889999986
No 472
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.62 E-value=5.3e-08 Score=119.39 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=60.1
Q ss_pred CCCCchhhhHHHHHHhhh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765 173 TSNPNDQKKRLSIALELI----NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248 (606)
Q Consensus 173 ~~~s~g~~krl~IA~aL~----~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 248 (606)
..+|||||+++.||++|+ ..|++++||||++|||+.....+.++|+++++ +.++|++||++. +...||+++.+
T Consensus 1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~~ 1149 (1164)
T TIGR02169 1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIGV 1149 (1164)
T ss_pred hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEeE
Confidence 345555555556666665 35899999999999999999999999999865 478999999974 56899999887
Q ss_pred cC
Q psy13765 249 SG 250 (606)
Q Consensus 249 ~~ 250 (606)
..
T Consensus 1150 ~~ 1151 (1164)
T TIGR02169 1150 TM 1151 (1164)
T ss_pred EE
Confidence 53
No 473
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.59 E-value=1.7e-07 Score=112.33 Aligned_cols=85 Identities=28% Similarity=0.350 Sum_probs=75.4
Q ss_pred CccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcC--CcEEEEeCCCCCCCHHHHHHHHHHH
Q psy13765 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINN--PRVMFLDEPTTGLDSQSCSQCIKLL 217 (606)
Q Consensus 140 ~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~--P~lllLDEPTsgLD~~~~~~i~~~l 217 (606)
+.+..|||||+-.++||.+|+ +|..+..+ -++|||||||..||+.+...++++|
T Consensus 811 r~~~~LSGGE~~~~sLalrLA------------------------Ls~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l 866 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLA------------------------LSDLLQGRARLELLFLDEPFGTLDEERLEKLAEIL 866 (908)
T ss_pred cccccCCchHHHHHHHHHHHH------------------------HHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHH
Confidence 456789999999999887654 78888888 7999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 218 ~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
..+...+.+|++|||++ ++...+|.++.++.
T Consensus 867 ~~i~~~~~qiiIISH~e--el~e~~~~~i~V~k 897 (908)
T COG0419 867 EELLSDGRQIIIISHVE--ELKERADVRIRVKK 897 (908)
T ss_pred HHHHhcCCeEEEEeChH--HHHHhCCeEEEEEe
Confidence 99998899999999995 46689999999864
No 474
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.57 E-value=5.8e-08 Score=96.52 Aligned_cols=182 Identities=18% Similarity=0.232 Sum_probs=112.0
Q ss_pred EEEEEeeEEEEecCCc------ccccccccceeeeEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc
Q psy13765 28 EIKFKDLTYTVSTGLG------FKQEPKDVLKNLCGRFPSN-QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS 100 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~------~~~~~~~iL~~vs~~i~~G-e~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~ 100 (606)
-.-++|+|+++..+.- ..-++.++++=+|+..+|- -.+-+-|..=.|+..--.+=.|....-..=++ +.+..
T Consensus 17 l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rl-F~~lT 95 (250)
T COG0411 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRL-FPGLT 95 (250)
T ss_pred EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccc-cCCCc
Confidence 3457888888865421 1134567888899988863 35557788777777766555554321000011 11110
Q ss_pred C-Chh--hhcccEE--EEccCCCCCCCC-----cHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCC
Q psy13765 101 R-NIN--AFRRVSC--YIQQDDRLQPLL-----TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170 (606)
Q Consensus 101 ~-~~~--~~~~~~~--yv~Q~~~l~~~l-----tv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de 170 (606)
. +.- ......+ .....+...... ...++++.+||.+.++++.++||+|||||+.||+||+.+|++++|||
T Consensus 96 VlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDE 175 (250)
T COG0411 96 VLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDE 175 (250)
T ss_pred HHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecC
Confidence 0 000 0000001 000000000001 13678899999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhHHH-HHHhhhcC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy13765 171 PTTSNPNDQKKRLS-IALELINN--PRVMFLDEPTTGLDSQSCSQCIKLLKMISQ 222 (606)
Q Consensus 171 ~~~~~s~g~~krl~-IA~aL~~~--P~lllLDEPTsgLD~~~~~~i~~~l~~l~~ 222 (606)
|.++++..|+.++. +.+.+-.+ -.+++. | .-|+++.++++
T Consensus 176 PaAGln~~e~~~l~~~i~~i~~~~g~tillI-E-----------HdM~~Vm~l~d 218 (250)
T COG0411 176 PAAGLNPEETEELAELIRELRDRGGVTILLI-E-----------HDMKLVMGLAD 218 (250)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhcCCcEEEEE-E-----------eccHHHhhhcc
Confidence 99999999998875 44555543 344444 2 34566666665
No 475
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.56 E-value=1.9e-06 Score=101.93 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=44.7
Q ss_pred hhhcCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765 188 ELINNPRVMFLDEPTTGLD-SQSCSQCIKLLKMISQQGRTIICTIHQPSA 236 (606)
Q Consensus 188 aL~~~P~lllLDEPTsgLD-~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 236 (606)
.+..+|+++++|||...|| +..+..+.+.++++++.|..++++||+++.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 4567999999999999999 888999999999999889999999999864
No 476
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.56 E-value=8.5e-08 Score=96.17 Aligned_cols=47 Identities=28% Similarity=0.472 Sum_probs=34.3
Q ss_pred cceee-eEEEeCCeEEEEECCCCCCHHHHHHHHh--CCCCCCCccEEEECCc
Q psy13765 51 VLKNL-CGRFPSNQLIAIMGPSGAGKSSLLDVLS--GYRSNGVTGQILTNGH 99 (606)
Q Consensus 51 iL~~v-s~~i~~Ge~~aIiGpsGaGKSTLL~~L~--g~~~~~~~G~I~~~G~ 99 (606)
-|+.+ .+-+++|++++|.||+|+|||||...++ +.. .+ .+.+++...
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g-~~~~~is~e 57 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-DG-DPVIYVTTE 57 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-cC-CeEEEEEcc
Confidence 45553 4579999999999999999999988654 333 22 455666653
No 477
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.52 E-value=3.9e-07 Score=99.34 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=66.7
Q ss_pred CCCceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC---c
Q psy13765 23 TADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG---H 99 (606)
Q Consensus 23 ~~~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G---~ 99 (606)
...+..++.++++..+.. +..+++.++ .+.+||.++|+||||+|||||+++|+++..+ ..|.|.+.| +
T Consensus 134 ~~~p~~~~r~~v~~~l~T-------Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~p-d~gvv~liGergr 204 (450)
T PRK06002 134 ATAPPAMTRARVETGLRT-------GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAF-DTVVIALVGERGR 204 (450)
T ss_pred CCCCCCeEeecceEEcCC-------CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCC-CeeeeeecccCCc
Confidence 334456788899888743 356888886 8999999999999999999999999998766 478888865 3
Q ss_pred cCC---h----hhhcccEEEEccCCC
Q psy13765 100 SRN---I----NAFRRVSCYIQQDDR 118 (606)
Q Consensus 100 ~~~---~----~~~~~~~~yv~Q~~~ 118 (606)
+.. . ...++.+++|+|.+.
T Consensus 205 ev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 205 EVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred cHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 321 1 112467999999875
No 478
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.48 E-value=2.1e-07 Score=90.81 Aligned_cols=74 Identities=28% Similarity=0.395 Sum_probs=54.4
Q ss_pred HHHHHHHcCCc----cccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhh-hHHHHHHhhhcCCcEEEE
Q psy13765 125 IENVMSLLGLD----ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK-KRLSIALELINNPRVMFL 198 (606)
Q Consensus 125 v~~~l~~~gl~----~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~-krl~IA~aL~~~P~lllL 198 (606)
|+.-|+..+|- +..++...+|||||+||++|||+|+.+|+|+++|||++.|+.=-- |-=++...|-.+-.|++.
T Consensus 126 Ve~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviV 204 (253)
T COG1117 126 VESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIV 204 (253)
T ss_pred HHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEE
Confidence 55566666663 344555668999999999999999999999999999999987332 223455555566666665
No 479
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.47 E-value=1.1e-07 Score=93.32 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
+++|.||||||||||.++|++..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999999976
No 480
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.47 E-value=4.6e-07 Score=107.29 Aligned_cols=140 Identities=17% Similarity=0.210 Sum_probs=83.8
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHH
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENV 128 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~ 128 (606)
..+-+|+++. +.+.++.|.|||.+||||+|+.++-..- +.+...|||=+..-.+ -++.+
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i------------------lAq~G~~VPa~~a~i~--~~d~I 653 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL------------------LAQIGSFVPAESARIG--IVDRI 653 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH------------------HHhcCCceeccceEec--ccCee
Confidence 3567788877 6788999999999999999999864310 0001112221111110 01222
Q ss_pred HHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC---CCCC
Q psy13765 129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP---TTGL 205 (606)
Q Consensus 129 l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP---TsgL 205 (606)
...+|- .|....+.|.=+.....++..|-. +++++++++||| |+.+
T Consensus 654 ~triga---~d~i~~g~STF~~E~~~~~~il~~----------------------------at~~sLvllDE~GrGTs~~ 702 (854)
T PRK05399 654 FTRIGA---SDDLASGRSTFMVEMTETANILNN----------------------------ATERSLVLLDEIGRGTSTY 702 (854)
T ss_pred eeccCc---ccccccCcccHHHHHHHHHHHHHh----------------------------CCCCcEEEEecCCCCCCcc
Confidence 222232 223334466555555554444332 234999999999 8888
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcce
Q psy13765 206 DSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQ 244 (606)
Q Consensus 206 D~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~ 244 (606)
|..+ ....+++.+.+. |.+++++||.. ++.+++|+
T Consensus 703 dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 703 DGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred hhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 8444 345566666665 58999999993 46677776
No 481
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.46 E-value=3.3e-07 Score=93.30 Aligned_cols=74 Identities=23% Similarity=0.348 Sum_probs=59.2
Q ss_pred HHHHHHHcCCc-cccCCccc-cCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH-HHHHhhhcC-CcEEEE
Q psy13765 125 IENVMSLLGLD-ESQNTRSS-QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL-SIALELINN-PRVMFL 198 (606)
Q Consensus 125 v~~~l~~~gl~-~~~~~~~~-~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl-~IA~aL~~~-P~lllL 198 (606)
++++++.+|+. +..++.+. +||||||||++||++|+.+|+++++|||+++++...++.+ .+.+.+..+ ..+++.
T Consensus 130 ~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~ 207 (252)
T CHL00131 130 INEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILI 207 (252)
T ss_pred HHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 46778889997 46778887 5999999999999999999999999999999998766655 566666543 344443
No 482
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.45 E-value=2.9e-06 Score=100.46 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=43.8
Q ss_pred hhhcCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765 188 ELINNPRVMFLDEPTTGLD-SQSCSQCIKLLKMISQQGRTIICTIHQPSA 236 (606)
Q Consensus 188 aL~~~P~lllLDEPTsgLD-~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 236 (606)
.+-.+|+++++|||+.+|| +..+..+.+.++.++++|.+++++||++..
T Consensus 631 ~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 680 (811)
T PRK13873 631 RFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLAD 680 (811)
T ss_pred HhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 3456899999999999999 788999999999998889999999999863
No 483
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.39 E-value=6.6e-07 Score=98.80 Aligned_cols=144 Identities=19% Similarity=0.265 Sum_probs=82.9
Q ss_pred cceee-eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccE-EEECCccCChhhhc---ccEEEEccCCCCCCCCcH
Q psy13765 51 VLKNL-CGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQ-ILTNGHSRNINAFR---RVSCYIQQDDRLQPLLTI 125 (606)
Q Consensus 51 iL~~v-s~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~-I~~~G~~~~~~~~~---~~~~yv~Q~~~l~~~ltv 125 (606)
-|+.+ .+=+.+|+++.|.|++|+|||||+..++...... .++ +++.+++.. .+++ +.+++..++-.+....+.
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EEs~-~qi~~ra~rlg~~~~~l~~~~e~~~ 159 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEESL-QQIKMRAIRLGLPEPNLYVLSETNW 159 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcCCH-HHHHHHHHHcCCChHHeEEcCCCCH
Confidence 35554 3579999999999999999999999887654321 234 466665321 2221 123322221111111111
Q ss_pred HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCC-
Q psy13765 126 ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTG- 204 (606)
Q Consensus 126 ~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsg- 204 (606)
+++++ ++ . -.+|+++++|.-++=
T Consensus 160 ~~I~~---------------------------~i-~----------------------------~~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 160 EQICA---------------------------NI-E----------------------------EENPQACVIDSIQTLY 183 (454)
T ss_pred HHHHH---------------------------HH-H----------------------------hcCCcEEEEecchhhc
Confidence 11100 00 0 123888888876541
Q ss_pred ---CC-----HHHHHHHHHHHHHHHh-CCCEEEEEecCCch-------HHHhhcceeeeecCCc
Q psy13765 205 ---LD-----SQSCSQCIKLLKMISQ-QGRTIICTIHQPSA-------TLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 205 ---LD-----~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~-------~i~~~~D~v~~L~~G~ 252 (606)
++ ....++++..|.++++ .|.|++++.|.... .+..++|.|+.|++++
T Consensus 184 ~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 184 SPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 11 2234556666777755 59999999996442 1567899999998654
No 484
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=8.5e-07 Score=93.16 Aligned_cols=74 Identities=27% Similarity=0.414 Sum_probs=58.8
Q ss_pred HHHHHHHcCCc----cccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH-HHHHhhhcCCcEEEE
Q psy13765 125 IENVMSLLGLD----ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL-SIALELINNPRVMFL 198 (606)
Q Consensus 125 v~~~l~~~gl~----~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl-~IA~aL~~~P~lllL 198 (606)
++++++.+++. +..+..+.+||||||||++||++|+.+|+++++|||+++++...++.+ .+.+.+..+..+++.
T Consensus 177 ~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiiv 255 (305)
T PRK14264 177 VERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVV 255 (305)
T ss_pred HHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 46677778774 455778899999999999999999999999999999999987655554 666676665444443
No 485
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.31 E-value=1.6e-06 Score=95.67 Aligned_cols=147 Identities=17% Similarity=0.280 Sum_probs=80.1
Q ss_pred ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM 129 (606)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l 129 (606)
.++++.+..+++|++++++||||+||||++..|++..... .|. +.++++.+|. ...++.+-+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~-~G~--------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR-HGA--------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh-cCC--------------CeEEEEeCCc---cchhHHHHH
Confidence 3566777778899999999999999999999999865321 221 2456666654 123333222
Q ss_pred H----HcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhh-HHHHHHhhhcCC-----cEEEEe
Q psy13765 130 S----LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK-RLSIALELINNP-----RVMFLD 199 (606)
Q Consensus 130 ~----~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~k-rl~IA~aL~~~P-----~lllLD 199 (606)
. .+|+...... .+ ....+++.-+.+.++++.|.+.. +|+. .+.-..+++.++ .+|+||
T Consensus 306 r~~AeilGVpv~~~~-----~~---~Dl~~aL~~L~d~d~VLIDTaGr----~~~d~~~~e~~~~l~~~~~p~e~~LVLd 373 (484)
T PRK06995 306 RIYGKILGVPVHAVK-----DA---ADLRLALSELRNKHIVLIDTIGM----SQRDRMVSEQIAMLHGAGAPVKRLLLLN 373 (484)
T ss_pred HHHHHHhCCCeeccC-----Cc---hhHHHHHHhccCCCeEEeCCCCc----ChhhHHHHHHHHHHhccCCCCeeEEEEe
Confidence 2 2232111000 11 11222333334445556666322 1211 122333333343 789999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy13765 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH 232 (606)
Q Consensus 200 EPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H 232 (606)
+++.+ ..+.+.++..+..+.+-++.|+
T Consensus 374 At~~~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 374 ATSHG------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred CCCcH------HHHHHHHHHhccCCCCEEEEeC
Confidence 99887 3445555555555666555555
No 486
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.31 E-value=7.5e-07 Score=97.00 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=60.8
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCC--ccEEEECCccCCh---h------hhcccEEEEccCC
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGV--TGQILTNGHSRNI---N------AFRRVSCYIQQDD 117 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~--~G~I~~~G~~~~~---~------~~~~~~~yv~Q~~ 117 (606)
..+++++ +.+.+||.++|+||||+|||||+++|+|...++. -|.|-.+|++... . ..|..+++++|++
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 5699999 9999999999999999999999999999876531 2445555543211 1 1245689999999
Q ss_pred CCCCCCcHHHHH
Q psy13765 118 RLQPLLTIENVM 129 (606)
Q Consensus 118 ~l~~~ltv~~~l 129 (606)
..+..+++.+.+
T Consensus 222 s~~~rl~a~e~a 233 (434)
T PRK07196 222 SPLMRIKATELC 233 (434)
T ss_pred ChhhhHHHHHHH
Confidence 888888775544
No 487
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.26 E-value=2e-06 Score=105.64 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=38.5
Q ss_pred eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc
Q psy13765 53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH 99 (606)
Q Consensus 53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~ 99 (606)
.=+++..+++++++|+|++|+|||||++++++.......|.+++++.
T Consensus 198 ~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 198 SLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 33466778999999999999999999999977654445899998763
No 488
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.25 E-value=3.3e-06 Score=90.88 Aligned_cols=42 Identities=29% Similarity=0.456 Sum_probs=32.1
Q ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEE-EECCc
Q psy13765 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI-LTNGH 99 (606)
Q Consensus 57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I-~~~G~ 99 (606)
+-+.+|+++.|.|++|+|||||+..++..... ..+++ ++.+.
T Consensus 77 GGi~~GslvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~E 119 (372)
T cd01121 77 GGLVPGSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGE 119 (372)
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECC
Confidence 46899999999999999999999988875432 13455 44554
No 489
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.23 E-value=3e-06 Score=72.69 Aligned_cols=57 Identities=32% Similarity=0.511 Sum_probs=40.6
Q ss_pred CCccccCChHHHHH-HHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhc------CCcEEEEeCCCCCCCHHHHH
Q psy13765 139 NTRSSQLSGGQKKR-LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELIN------NPRVMFLDEPTTGLDSQSCS 211 (606)
Q Consensus 139 ~~~~~~lSgGqrqR-v~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~------~P~lllLDEPTsgLD~~~~~ 211 (606)
.+..+++||||||. +.++.++. ++..+.. .|++++||||+++||+....
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aa------------------------l~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~ 82 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAA------------------------LAALYSSSSGRGDSPRLLFLDEAFSKLDEENIE 82 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHH------------------------HHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHH------------------------HHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHH
Confidence 34567899999954 44444332 2222222 28999999999999999999
Q ss_pred HHHHHHHH
Q psy13765 212 QCIKLLKM 219 (606)
Q Consensus 212 ~i~~~l~~ 219 (606)
.+++++++
T Consensus 83 ~~~~~l~~ 90 (90)
T PF13558_consen 83 RLMDLLRQ 90 (90)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999874
No 490
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.22 E-value=1.7e-05 Score=81.61 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=32.6
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-+.|+++.+-+++|+++.|.||+|+|||||+..++..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568888888999999999999999999999887654
No 491
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.20 E-value=2.1e-06 Score=106.35 Aligned_cols=43 Identities=23% Similarity=0.449 Sum_probs=39.0
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy13765 189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP 234 (606)
Q Consensus 189 L~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 234 (606)
+..+|++++|||||+|||+.....++++++++ |.++|+++|..
T Consensus 1274 ~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1274 YPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred cCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 55679999999999999999999999999887 78999999873
No 492
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=98.17 E-value=1.4e-05 Score=84.79 Aligned_cols=82 Identities=20% Similarity=0.337 Sum_probs=55.2
Q ss_pred ccCCCC-CCCCchhhhHHHHHHhh---------hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765 167 FLDEPT-TSNPNDQKKRLSIALEL---------INNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSA 236 (606)
Q Consensus 167 ~~de~~-~~~s~g~~krl~IA~aL---------~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 236 (606)
+-+.|. .-.|.||+|-+.+|.-| ..+++||+|||-+|-||..-+..+++. . +.+.-+++|+-+.+
T Consensus 267 ~~~~~~~~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~---~~~~Q~fvT~t~~~- 341 (363)
T COG1195 267 LNGKPAADFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-I---ELGVQVFVTTTDLE- 341 (363)
T ss_pred ECCcchhhhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-c---ccCCeEEEEccCHH-
Confidence 334553 23688888888777554 468899999999999999999988877 2 23444555555533
Q ss_pred HHHhhcc---eeeeecCCcE
Q psy13765 237 TLFQMFD---QVYLLSGGQC 253 (606)
Q Consensus 237 ~i~~~~D---~v~~L~~G~~ 253 (606)
.+.+..+ ++....+|++
T Consensus 342 ~~~~~~~~~~~~f~V~~g~i 361 (363)
T COG1195 342 DIDDNLDENAQMFHVEDGKI 361 (363)
T ss_pred HhhhhhhccceEEEEeccee
Confidence 2333444 6666667765
No 493
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.16 E-value=9.9e-06 Score=73.29 Aligned_cols=44 Identities=18% Similarity=0.401 Sum_probs=33.1
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCc
Q psy13765 191 NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-----QGRTIICTIHQPS 235 (606)
Q Consensus 191 ~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-----~g~tii~~~H~~~ 235 (606)
.++.++++||.-.. +......+.+.+..... .+.++|+++++..
T Consensus 83 ~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 83 AKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 34999999997664 56667778888877753 4778999988654
No 494
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.16 E-value=0.00034 Score=71.06 Aligned_cols=217 Identities=11% Similarity=0.069 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcCC---C-CChHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy13765 336 GVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNS---G-EYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEM 411 (606)
Q Consensus 336 ~~l~~R~~~~~~Rd~~~~~~r~~~~i~~all~G~~f~~~---~-~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er 411 (606)
+.+.||.++.+.|.|..+..-.+..++.|+.. ..+.+. . .+..+...-.+...+ ......++. +.
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~p~l-~~------- 70 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPW--VFLFLIPAI-TM------- 70 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHH--HHHHHHHHH-HH-------
Confidence 46789999999999999888777777777442 222110 1 111111111111111 111111111 11
Q ss_pred hhheecccCCC--------cchHHHHHHHHHHHhhHHHHHHh---hhhhhhhcccCCC---CchHHHHHHHHHHHHHHHH
Q psy13765 412 SILIKEHFNRW--------YSLKAYYVSVNLLDIPVAGFCCL---LFTTIVYPLTGQP---MELTRFTMFNCTSLLVVFI 477 (606)
Q Consensus 412 ~v~~rE~~~~~--------Y~~~~y~la~~~~elP~~~~~~~---~f~~i~Y~l~gl~---~~~~~f~~f~~~~~l~~~~ 477 (606)
..+.|||++|. -+...+.++|.++-.-...+..+ ++....++. |.+ .+...++...+..++...+
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~ 149 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQL-GNPVGNLDIGSTFGSYIGLLLLGSV 149 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccccccHHHHHHHHHHHHHHHHH
Confidence 34456666666 45678899999988755443332 222222222 222 2445555555556677778
Q ss_pred HHHHHhHHhccccchh-HHHHHHHHHHHHHHhcccccCCCCc--ccccccccccCHHHHHHHHHHHHHhcCCCcccccCC
Q psy13765 478 AQSVGYMVGAVFNVVN-GTFVGPVLVVPMMMFSGFGVSINDI--PKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDE 554 (606)
Q Consensus 478 ~~~~g~~i~~~~~~~~-a~~~~~~~~~~~~lf~G~~i~~~~i--p~~~~W~~~iS~~~y~~eal~~n~~~~~~~~~~c~~ 554 (606)
..++|.++|++.+++. |..++ .... +.++.|+.. ..++ |++.+|+.|+||..|-.+.. . + .+
T Consensus 150 ~~aig~~iSsl~~~q~~a~~~~-~~~~-~~l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~~~-----~--g-~i---- 214 (240)
T TIGR03518 150 YTAIGLFASSLTENQIVAFIIA-VFLC-FLFYFGFDG-LASLLWGGSAYTISELGLSYHYESIS-----R--G-VI---- 214 (240)
T ss_pred HHHHHHHHHHHhchHHHHHHHH-HHHH-HHHHHHHHH-HhhhcchhHHHHHHHcCHHHHHHHHH-----c--C-cc----
Confidence 8899999999987665 43333 2222 222222211 2333 78889999999987754422 1 1 00
Q ss_pred CccccCChhHHHhhcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHh
Q psy13765 555 LYCHYKEPKKFLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSW 600 (606)
Q Consensus 555 ~~c~~~~g~~~L~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~ 600 (606)
.|.|+...+.+.+++..++...++.
T Consensus 215 ---------------------~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 215 ---------------------DSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred ---------------------cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 0466777778778777777766654
No 495
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.14 E-value=2.8e-06 Score=67.45 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=29.0
Q ss_pred ceeeeEEEeC-CeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765 52 LKNLCGRFPS-NQLIAIMGPSGAGKSSLLDVLSGYRS 87 (606)
Q Consensus 52 L~~vs~~i~~-Ge~~aIiGpsGaGKSTLL~~L~g~~~ 87 (606)
.++.++++.+ |+++.|.||||||||||++++.=.+.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4456677775 57999999999999999999875543
No 496
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.13 E-value=9.5e-06 Score=83.38 Aligned_cols=60 Identities=23% Similarity=0.449 Sum_probs=51.1
Q ss_pred CCchhhhHHHHHHhhhc--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 175 NPNDQKKRLSIALELIN--NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~--~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
||-|+-|-+.+|.+|.. .|.+++||||-++|-|..-..+...+++.++++ -|+++||.+.
T Consensus 271 LSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~r 332 (373)
T COG4637 271 LSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPR 332 (373)
T ss_pred ccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHH
Confidence 66677777777777764 589999999999999999999999999988765 8999999865
No 497
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.11 E-value=5.2e-05 Score=76.73 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=36.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHH-HHHHHHHh-CCCEEEEEecCCchHHHhhcc
Q psy13765 193 PRVMFLDEPTTGLDSQSCSQCI-KLLKMISQ-QGRTIICTIHQPSATLFQMFD 243 (606)
Q Consensus 193 P~lllLDEPTsgLD~~~~~~i~-~~l~~l~~-~g~tii~~~H~~~~~i~~~~D 243 (606)
..++++||+-.|=++.....+. ..++.+.+ .+..++++||..+ +.+..+
T Consensus 123 ~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~--l~~~~~ 173 (235)
T PF00488_consen 123 KSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE--LAELLE 173 (235)
T ss_dssp TEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG--GGGHHH
T ss_pred ceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch--hHHHhh
Confidence 7899999999999998887765 45667777 4889999999964 334443
No 498
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.10 E-value=1.1e-05 Score=79.46 Aligned_cols=28 Identities=43% Similarity=0.618 Sum_probs=26.0
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRS 87 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~ 87 (606)
++|++++|+||||||||||++.|++..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999753
No 499
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.09 E-value=7.4e-05 Score=80.57 Aligned_cols=149 Identities=21% Similarity=0.349 Sum_probs=87.3
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHh-CCCCCCCccEEEECCccC-----Chhhhccc-EEEEccCCCCCCCCcHHHHHH
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLS-GYRSNGVTGQILTNGHSR-----NINAFRRV-SCYIQQDDRLQPLLTIENVMS 130 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~-g~~~~~~~G~I~~~G~~~-----~~~~~~~~-~~yv~Q~~~l~~~ltv~~~l~ 130 (606)
-|++| ++.|+|.+=-||||||++|. |.+.. ..| ||++. +.-+.|.. .-.|..-|. .-.+.
T Consensus 241 GIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnH-ipG----DGRE~VVT~~~avkirAEDGR~V~~vDI-------SpFI~ 307 (448)
T PF09818_consen 241 GIPKG-VTLIVGGGYHGKSTLLEALERGVYNH-IPG----DGREFVVTDPDAVKIRAEDGRSVEGVDI-------SPFIN 307 (448)
T ss_pred eeCCc-EEEEECCCCccHHHHHHHHHhcccCC-CCC----CCceEEEECCCceEEEecCCceEeCccc-------hHHHh
Confidence 58899 99999999999999999994 55432 222 23221 00011100 001111110 01111
Q ss_pred HcCCccccCC---ccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC--
Q psy13765 131 LLGLDESQNT---RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL-- 205 (606)
Q Consensus 131 ~~gl~~~~~~---~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL-- 205 (606)
+|..-.|+ .-.+=||-.-|-..|..||-.. .++|++||=||+=
T Consensus 308 --~LP~g~dT~~FsT~~ASGSTSqAAnI~EAlE~G------------------------------a~~LLiDEDtsATNf 355 (448)
T PF09818_consen 308 --NLPGGKDTTCFSTENASGSTSQAANIMEALEAG------------------------------ARLLLIDEDTSATNF 355 (448)
T ss_pred --hCCCCCCCCcccccCCCchHHHHHHHHHHHHcC------------------------------CCEEEEcCcccchhe
Confidence 11111121 2234577777777766666666 7778888877753
Q ss_pred ---CHHHHHHH----------HHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 206 ---DSQSCSQC----------IKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 206 ---D~~~~~~i----------~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
|...+..+ ++.++.|.+ .|.+.|+++-- +...++.+|+|++|++=+
T Consensus 356 miRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgdy~~vAD~Vi~Md~Y~ 415 (448)
T PF09818_consen 356 MIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGDYFDVADRVIMMDEYR 415 (448)
T ss_pred eehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chhhHhhCCEEEEecCcc
Confidence 44444443 566777754 59888877755 457889999999998754
No 500
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.09 E-value=1.3e-05 Score=86.07 Aligned_cols=124 Identities=19% Similarity=0.332 Sum_probs=73.4
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCccEEEECCccCC--hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCc
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTNGHSRN--INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLD 135 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~--~~~G~I~~~G~~~~--~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~ 135 (606)
++|.+++|.||+||||||+|++|++...+ +..+.|.....+.. ....++..+.+.|...--...+..+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~-------- 203 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAA-------- 203 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHH--------
Confidence 58899999999999999999999997532 12345555444332 1222333456666532100011111
Q ss_pred cccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHH
Q psy13765 136 ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK 215 (606)
Q Consensus 136 ~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~ 215 (606)
+ + -.+|=.+|+++++.|- =|..++...++
T Consensus 204 ------------~------l------------------------------~~aLR~~Pd~i~vGEi---Rd~et~~~al~ 232 (358)
T TIGR02524 204 ------------G------V------------------------------RNALRRKPHAILVGEA---RDAETISAALE 232 (358)
T ss_pred ------------H------H------------------------------HHHhccCCCEEeeeee---CCHHHHHHHHH
Confidence 1 1 1122234999999983 25555443333
Q ss_pred HHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765 216 LLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248 (606)
Q Consensus 216 ~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 248 (606)
.+..|.-++.|.|-.+ .....+|++-+
T Consensus 233 ----aa~tGh~v~tTlHa~~--~~~~i~Rl~~~ 259 (358)
T TIGR02524 233 ----AALTGHPVYTTLHSSG--VAETIRRLVGS 259 (358)
T ss_pred ----HHHcCCcEEEeeccCC--HHHHHHHHHHh
Confidence 3456889999999865 34667776654
Done!