Query psy13765
Match_columns 606
No_of_seqs 420 out of 2632
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:55:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 4E-46 1.4E-50 394.5 25.1 222 27-263 23-252 (366)
2 3gfo_A Cobalt import ATP-bindi 100.0 7E-46 2.4E-50 380.6 24.3 220 27-264 6-233 (275)
3 2olj_A Amino acid ABC transpor 100.0 1.2E-45 4.3E-50 376.5 25.9 218 28-264 24-248 (263)
4 1b0u_A Histidine permease; ABC 100.0 1.2E-45 4.1E-50 376.7 24.6 218 28-264 6-242 (262)
5 3fvq_A Fe(3+) IONS import ATP- 100.0 1.1E-45 3.9E-50 390.8 24.3 218 28-264 4-228 (359)
6 3rlf_A Maltose/maltodextrin im 100.0 2.5E-45 8.7E-50 390.7 25.8 218 28-264 3-223 (381)
7 3tif_A Uncharacterized ABC tra 100.0 1.8E-45 6.1E-50 369.6 23.2 221 29-262 2-232 (235)
8 4g1u_C Hemin import ATP-bindin 100.0 3.1E-45 1.1E-49 374.4 25.0 217 27-263 10-236 (266)
9 1vpl_A ABC transporter, ATP-bi 100.0 3.7E-45 1.3E-49 371.7 25.0 219 27-264 14-235 (256)
10 2pcj_A ABC transporter, lipopr 100.0 4.9E-45 1.7E-49 363.9 23.8 210 28-258 4-222 (224)
11 1ji0_A ABC transporter; ATP bi 100.0 7E-45 2.4E-49 366.4 24.2 217 28-263 6-227 (240)
12 2yyz_A Sugar ABC transporter, 100.0 2.2E-44 7.7E-49 381.7 26.2 218 28-264 3-223 (359)
13 1g6h_A High-affinity branched- 100.0 1.4E-44 4.7E-49 367.9 23.2 221 28-261 7-239 (257)
14 1z47_A CYSA, putative ABC-tran 100.0 2.9E-44 9.8E-49 380.1 25.7 221 26-264 12-235 (355)
15 2it1_A 362AA long hypothetical 100.0 2.5E-44 8.6E-49 381.7 24.3 218 28-264 3-223 (362)
16 1g29_1 MALK, maltose transport 100.0 3.7E-44 1.3E-48 382.2 25.4 218 28-264 3-229 (372)
17 1oxx_K GLCV, glucose, ABC tran 100.0 2E-44 6.9E-49 381.9 22.6 218 28-264 3-230 (353)
18 1v43_A Sugar-binding transport 100.0 4.4E-44 1.5E-48 381.2 24.1 218 28-264 11-231 (372)
19 2yz2_A Putative ABC transporte 100.0 8.1E-44 2.8E-48 364.0 24.7 222 28-264 2-227 (266)
20 3d31_A Sulfate/molybdate ABC t 100.0 5.3E-44 1.8E-48 377.6 23.1 213 29-263 2-216 (348)
21 2onk_A Molybdate/tungstate ABC 100.0 5.4E-44 1.9E-48 359.8 21.8 212 29-264 2-216 (240)
22 2ihy_A ABC transporter, ATP-bi 100.0 4.6E-44 1.6E-48 368.0 21.7 222 26-262 19-250 (279)
23 2ff7_A Alpha-hemolysin translo 100.0 7.2E-43 2.5E-47 353.2 23.6 215 26-263 5-231 (247)
24 2ixe_A Antigen peptide transpo 100.0 5.2E-43 1.8E-47 358.9 22.7 219 28-264 16-245 (271)
25 3nh6_A ATP-binding cassette SU 100.0 6.3E-43 2.2E-47 363.4 23.2 217 27-264 52-277 (306)
26 2qi9_C Vitamin B12 import ATP- 100.0 6.3E-43 2.1E-47 353.9 22.5 207 28-262 4-220 (249)
27 2d2e_A SUFC protein; ABC-ATPas 100.0 4.1E-43 1.4E-47 355.6 21.0 219 28-261 3-230 (250)
28 2nq2_C Hypothetical ABC transp 100.0 2.9E-42 9.9E-47 349.9 24.6 211 28-262 4-215 (253)
29 2zu0_C Probable ATP-dependent 100.0 1.7E-42 5.7E-47 354.4 22.5 231 27-271 19-260 (267)
30 1mv5_A LMRA, multidrug resista 100.0 1.2E-42 4.2E-47 350.6 18.6 213 29-264 2-226 (243)
31 2ghi_A Transport protein; mult 100.0 1.1E-41 3.8E-46 347.0 22.5 215 27-264 16-242 (260)
32 1sgw_A Putative ABC transporte 100.0 8.1E-42 2.8E-46 338.1 18.6 204 25-253 7-210 (214)
33 2pjz_A Hypothetical protein ST 100.0 2.3E-41 7.8E-46 345.0 20.9 211 29-263 2-214 (263)
34 3gd7_A Fusion complex of cysti 100.0 3.2E-41 1.1E-45 361.2 19.0 211 27-264 18-242 (390)
35 2pze_A Cystic fibrosis transme 100.0 1.1E-40 3.7E-45 333.5 20.5 205 28-263 6-217 (229)
36 2cbz_A Multidrug resistance-as 100.0 1.9E-40 6.3E-45 333.5 19.5 206 28-264 3-217 (237)
37 3qf4_A ABC transporter, ATP-bi 100.0 7.6E-40 2.6E-44 369.6 24.0 218 27-264 340-566 (587)
38 4a82_A Cystic fibrosis transme 100.0 1.2E-39 4.1E-44 367.5 24.4 218 27-264 338-564 (578)
39 3b60_A Lipid A export ATP-bind 100.0 1.6E-39 5.4E-44 366.9 25.1 215 28-264 341-567 (582)
40 3b5x_A Lipid A export ATP-bind 100.0 1.1E-39 3.8E-44 368.1 23.4 216 27-264 340-567 (582)
41 3qf4_B Uncharacterized ABC tra 100.0 1.2E-39 4.3E-44 368.7 22.4 217 27-264 353-578 (598)
42 2yl4_A ATP-binding cassette SU 100.0 3E-39 1E-43 365.5 22.6 218 28-264 340-570 (595)
43 2bbs_A Cystic fibrosis transme 100.0 2.1E-38 7.2E-43 327.4 16.1 202 27-264 39-247 (290)
44 4f4c_A Multidrug resistance pr 100.0 6.6E-38 2.3E-42 381.9 21.8 221 27-264 1075-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 6.4E-37 2.2E-41 373.2 24.1 216 27-264 414-641 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 2E-36 6.8E-41 368.0 24.0 219 27-264 386-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 4.8E-36 1.6E-40 364.6 21.5 221 27-264 1029-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 3.7E-35 1.3E-39 331.3 20.7 206 26-264 355-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 3.2E-35 1.1E-39 328.2 19.8 205 26-264 285-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 2.3E-34 7.8E-39 320.8 20.8 206 26-263 267-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 9.5E-34 3.2E-38 319.4 17.4 202 32-264 350-559 (608)
52 3bk7_A ABC transporter ATP-bin 100.0 3.6E-34 1.2E-38 323.2 11.4 180 32-252 95-305 (607)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 7.9E-34 2.7E-38 316.9 12.9 184 28-252 20-235 (538)
54 3ux8_A Excinuclease ABC, A sub 100.0 2.8E-33 9.5E-38 320.8 16.9 209 48-263 30-297 (670)
55 2iw3_A Elongation factor 3A; a 100.0 6.2E-32 2.1E-36 315.6 21.5 201 26-264 433-635 (986)
56 2iw3_A Elongation factor 3A; a 100.0 1.5E-32 5.2E-37 320.7 15.4 211 26-258 669-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 4.2E-31 1.4E-35 302.8 17.4 95 167-263 536-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 1.6E-31 5.4E-36 301.3 9.0 195 29-256 70-302 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 7.2E-31 2.5E-35 292.6 11.6 164 59-255 22-217 (538)
60 2vf7_A UVRA2, excinuclease ABC 100.0 3.4E-29 1.2E-33 289.9 16.2 95 167-263 723-826 (842)
61 2r6f_A Excinuclease ABC subuni 100.0 1.3E-28 4.4E-33 285.6 18.3 96 167-264 838-942 (972)
62 3pih_A Uvrabc system protein A 100.0 3.5E-28 1.2E-32 283.7 22.1 96 167-264 798-902 (916)
63 2ygr_A Uvrabc system protein A 100.0 3.6E-28 1.2E-32 282.9 18.8 96 167-264 856-960 (993)
64 4aby_A DNA repair protein RECN 99.9 7.9E-28 2.7E-32 259.7 14.7 80 175-257 296-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 99.9 6.1E-29 2.1E-33 272.0 -1.5 167 53-263 129-337 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 4.2E-26 1.4E-30 243.1 14.4 86 168-255 273-364 (365)
67 3b85_A Phosphate starvation-in 99.9 3.8E-27 1.3E-31 231.9 -3.4 148 46-235 10-159 (208)
68 4gp7_A Metallophosphoesterase; 99.9 8.3E-26 2.8E-30 215.2 1.8 143 54-235 1-160 (171)
69 1e69_A Chromosome segregation 99.9 4.2E-24 1.4E-28 223.7 14.2 92 168-262 213-311 (322)
70 1tq4_A IIGP1, interferon-induc 99.9 2.4E-25 8.1E-30 239.9 -3.8 172 49-251 36-254 (413)
71 1ye8_A Protein THEP1, hypothet 99.9 1.8E-24 6.1E-29 207.7 2.6 144 64-255 2-159 (178)
72 2v9p_A Replication protein E1; 99.9 4.2E-25 1.4E-29 228.9 -13.0 171 28-269 101-271 (305)
73 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.6E-22 5.5E-27 212.5 3.0 132 51-253 160-292 (330)
74 1znw_A Guanylate kinase, GMP k 99.8 3.2E-24 1.1E-28 210.2 -9.7 187 47-249 7-202 (207)
75 2o5v_A DNA replication and rep 99.8 2.1E-21 7.2E-26 205.8 10.1 87 168-262 258-354 (359)
76 3b9q_A Chloroplast SRP recepto 99.8 3.8E-22 1.3E-26 207.1 4.2 161 52-253 90-284 (302)
77 3qkt_A DNA double-strand break 99.8 5E-21 1.7E-25 201.8 12.7 79 169-249 243-327 (339)
78 2dpy_A FLII, flagellum-specifi 99.8 3.3E-23 1.1E-27 225.4 -6.7 184 27-263 130-343 (438)
79 1z6g_A Guanylate kinase; struc 99.8 1.5E-23 5E-28 207.6 -10.3 180 49-247 10-206 (218)
80 4ad8_A DNA repair protein RECN 99.8 1.2E-20 4.3E-25 209.7 11.4 79 170-251 392-473 (517)
81 1tf7_A KAIC; homohexamer, hexa 99.8 1.1E-22 3.9E-27 226.5 -6.0 167 47-251 23-210 (525)
82 2og2_A Putative signal recogni 99.8 3.5E-21 1.2E-25 204.0 4.0 160 53-253 148-341 (359)
83 2obl_A ESCN; ATPase, hydrolase 99.8 5.9E-22 2E-26 209.4 -2.8 183 27-262 44-253 (347)
84 3sop_A Neuronal-specific septi 99.8 4.2E-22 1.4E-26 203.6 -3.8 148 64-235 4-151 (270)
85 1cr0_A DNA primase/helicase; R 99.8 1.1E-20 3.6E-25 195.0 5.3 185 49-253 22-237 (296)
86 2o8b_B DNA mismatch repair pro 99.8 1.1E-20 3.8E-25 223.9 4.9 172 28-261 750-939 (1022)
87 1tf7_A KAIC; homohexamer, hexa 99.8 2.7E-20 9.3E-25 207.4 6.1 154 56-252 275-444 (525)
88 3thx_A DNA mismatch repair pro 99.8 2.9E-20 1E-24 217.9 5.5 155 47-262 647-811 (934)
89 3aez_A Pantothenate kinase; tr 99.8 2.6E-22 9E-27 209.2 -14.0 159 59-252 87-246 (312)
90 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 6.1E-19 2.1E-23 164.1 10.0 89 138-252 51-141 (148)
91 2ehv_A Hypothetical protein PH 99.8 5.2E-20 1.8E-24 183.6 2.7 168 51-249 18-206 (251)
92 3pih_A Uvrabc system protein A 99.8 1.7E-19 5.8E-24 210.6 6.2 107 128-264 447-560 (916)
93 2eyu_A Twitching motility prot 99.8 1.7E-19 5.9E-24 183.3 5.3 133 50-250 15-147 (261)
94 3thx_B DNA mismatch repair pro 99.8 9E-20 3.1E-24 213.2 1.6 155 48-255 659-816 (918)
95 2jeo_A Uridine-cytidine kinase 99.8 4.1E-19 1.4E-23 178.4 5.5 177 47-265 10-188 (245)
96 2w0m_A SSO2452; RECA, SSPF, un 99.7 4E-19 1.4E-23 174.7 1.3 167 49-251 9-192 (235)
97 4a74_A DNA repair and recombin 99.7 1.7E-18 5.8E-23 170.4 4.9 157 57-252 20-201 (231)
98 2r6f_A Excinuclease ABC subuni 99.7 2.1E-17 7.3E-22 192.0 11.8 95 167-263 497-599 (972)
99 2ygr_A Uvrabc system protein A 99.7 3.3E-17 1.1E-21 191.1 12.8 96 167-264 514-617 (993)
100 1ewq_A DNA mismatch repair pro 99.7 3.9E-18 1.3E-22 196.6 3.6 150 47-257 564-717 (765)
101 1pzn_A RAD51, DNA repair and r 99.7 2.8E-18 9.7E-23 181.5 1.7 171 51-258 119-309 (349)
102 2i3b_A HCR-ntpase, human cance 99.7 5.1E-19 1.7E-23 171.3 -3.8 155 62-257 1-169 (189)
103 1wb9_A DNA mismatch repair pro 99.7 3.9E-18 1.3E-22 197.6 2.7 159 47-259 593-753 (800)
104 2vf7_A UVRA2, excinuclease ABC 99.7 7.7E-17 2.6E-21 186.9 12.1 94 168-263 373-474 (842)
105 1w1w_A Structural maintenance 99.7 1.7E-16 5.9E-21 172.3 14.0 76 172-249 331-410 (430)
106 2qnr_A Septin-2, protein NEDD5 99.7 8.6E-19 3E-23 181.8 -4.2 157 47-235 9-168 (301)
107 3asz_A Uridine kinase; cytidin 99.7 3.2E-19 1.1E-23 174.2 -8.1 146 59-235 3-162 (211)
108 3szr_A Interferon-induced GTP- 99.7 4.7E-18 1.6E-22 192.3 -0.5 193 28-264 10-237 (608)
109 3jvv_A Twitching mobility prot 99.7 4.3E-17 1.5E-21 172.7 6.6 128 58-251 119-246 (356)
110 1rj9_A FTSY, signal recognitio 99.6 4.7E-17 1.6E-21 168.9 4.7 143 61-235 101-259 (304)
111 1pui_A ENGB, probable GTP-bind 99.6 2.8E-17 9.5E-22 159.5 -0.4 181 28-226 3-202 (210)
112 1nlf_A Regulatory protein REPA 99.6 2.9E-16 9.8E-21 160.5 5.1 138 58-235 26-182 (279)
113 1lw7_A Transcriptional regulat 99.6 3.4E-18 1.2E-22 181.8 -11.7 163 51-249 157-342 (365)
114 1s96_A Guanylate kinase, GMP k 99.6 1.5E-16 5.1E-21 157.5 -0.5 152 57-267 11-163 (219)
115 2cvh_A DNA repair and recombin 99.6 3.7E-15 1.3E-19 145.5 8.5 155 50-251 7-185 (220)
116 2gza_A Type IV secretion syste 99.5 2.3E-15 8E-20 159.9 4.5 138 51-252 164-303 (361)
117 2ewv_A Twitching motility prot 99.5 2.5E-15 8.5E-20 160.3 4.6 132 50-249 126-257 (372)
118 2qag_C Septin-7; cell cycle, c 99.5 3.7E-16 1.3E-20 168.7 -5.2 162 28-235 11-178 (418)
119 2bdt_A BH3686; alpha-beta prot 99.5 1.5E-16 5.2E-21 152.6 -8.5 170 62-262 2-182 (189)
120 3kta_B Chromosome segregation 99.5 9.5E-14 3.3E-18 132.3 10.9 96 138-262 58-156 (173)
121 2qag_B Septin-6, protein NEDD5 99.5 5.3E-15 1.8E-19 159.3 -0.4 174 47-233 26-218 (427)
122 1n0w_A DNA repair protein RAD5 99.4 2.8E-13 9.7E-18 134.1 11.8 149 57-251 19-209 (243)
123 1zp6_A Hypothetical protein AT 99.4 8.3E-15 2.8E-19 140.3 -1.3 158 58-246 5-170 (191)
124 3ec2_A DNA replication protein 99.4 3.2E-14 1.1E-18 135.3 2.5 46 192-237 100-146 (180)
125 1htw_A HI0065; nucleotide-bind 99.4 1.4E-15 4.9E-20 142.9 -7.1 85 47-136 18-102 (158)
126 2kjq_A DNAA-related protein; s 99.4 1E-13 3.4E-18 128.8 5.5 96 50-236 29-127 (149)
127 2bbw_A Adenylate kinase 4, AK4 99.4 1.5E-15 5.2E-20 152.2 -8.8 153 61-224 26-200 (246)
128 3auy_A DNA double-strand break 99.4 7.6E-13 2.6E-17 140.9 9.2 84 142-252 278-363 (371)
129 2yhs_A FTSY, cell division pro 99.4 8.7E-14 3E-18 151.9 1.1 177 52-262 283-477 (503)
130 1nij_A Hypothetical protein YJ 99.3 3.7E-15 1.3E-19 155.6 -9.9 142 62-235 4-190 (318)
131 2f1r_A Molybdopterin-guanine d 99.3 9.3E-15 3.2E-19 139.1 -7.2 100 63-165 3-124 (171)
132 2rcn_A Probable GTPase ENGC; Y 99.3 5.1E-13 1.8E-17 141.1 4.3 107 51-161 205-330 (358)
133 3lda_A DNA repair protein RAD5 99.3 2.6E-12 8.9E-17 138.0 9.3 149 57-252 173-364 (400)
134 3e70_C DPA, signal recognition 99.3 4E-13 1.4E-17 140.7 2.8 142 59-234 126-279 (328)
135 1sxj_E Activator 1 40 kDa subu 99.3 1.8E-12 6E-17 136.1 7.6 182 65-289 39-228 (354)
136 2qm8_A GTPase/ATPase; G protei 99.3 4.5E-14 1.5E-18 148.6 -5.2 179 29-222 30-260 (337)
137 1udx_A The GTP-binding protein 99.3 8.3E-13 2.8E-17 142.5 3.2 168 52-246 147-320 (416)
138 2oap_1 GSPE-2, type II secreti 99.2 2.6E-14 8.9E-19 158.2 -11.3 178 49-243 247-458 (511)
139 2dr3_A UPF0273 protein PH0284; 99.1 6.1E-12 2.1E-16 124.6 1.3 59 192-250 128-196 (247)
140 2r6a_A DNAB helicase, replicat 99.1 5.2E-11 1.8E-15 130.1 8.1 181 49-253 190-401 (454)
141 1lvg_A Guanylate kinase, GMP k 99.1 2.2E-13 7.6E-18 132.3 -9.9 57 185-250 116-173 (198)
142 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1.1E-12 3.8E-17 140.2 -5.9 160 58-260 16-209 (392)
143 1sq5_A Pantothenate kinase; P- 99.1 2.6E-13 8.7E-18 141.0 -12.3 92 28-132 37-152 (308)
144 3c8u_A Fructokinase; YP_612366 99.1 2.2E-13 7.4E-18 133.0 -12.4 43 59-101 19-63 (208)
145 1p9r_A General secretion pathw 99.1 1E-12 3.5E-17 141.9 -9.2 136 49-198 156-315 (418)
146 1odf_A YGR205W, hypothetical 3 99.0 4.2E-11 1.4E-15 123.3 1.8 131 60-209 29-169 (290)
147 2zr9_A Protein RECA, recombina 99.0 3.7E-10 1.3E-14 119.2 8.5 66 193-258 140-237 (349)
148 2x8a_A Nuclear valosin-contain 99.0 2.3E-13 8E-18 139.0 -16.0 130 47-203 31-164 (274)
149 2yv5_A YJEQ protein; hydrolase 99.0 4.6E-11 1.6E-15 123.7 0.5 123 59-188 162-301 (302)
150 1vma_A Cell division protein F 98.9 3.9E-10 1.3E-14 116.9 4.9 46 54-100 96-141 (306)
151 1ls1_A Signal recognition part 98.9 2.2E-09 7.6E-14 110.6 9.0 119 53-221 91-210 (295)
152 3lnc_A Guanylate kinase, GMP k 98.9 4.9E-12 1.7E-16 125.2 -11.6 39 49-87 14-53 (231)
153 2px0_A Flagellar biosynthesis 98.9 2.4E-09 8.1E-14 110.5 7.7 153 60-272 103-268 (296)
154 3euj_A Chromosome partition pr 98.9 9.5E-10 3.3E-14 120.3 4.5 51 49-101 17-67 (483)
155 1in4_A RUVB, holliday junction 98.8 2.4E-11 8.3E-16 127.3 -8.5 168 47-244 29-211 (334)
156 1u0l_A Probable GTPase ENGC; p 98.8 1.1E-09 3.8E-14 113.1 3.3 61 58-119 165-231 (301)
157 3k1j_A LON protease, ATP-depen 98.8 6.4E-10 2.2E-14 125.7 0.2 155 47-219 45-227 (604)
158 3tr0_A Guanylate kinase, GMP k 98.7 1.1E-09 3.7E-14 105.5 -0.7 65 56-125 1-68 (205)
159 1iy2_A ATP-dependent metallopr 98.7 5.3E-11 1.8E-15 121.2 -11.5 125 48-195 61-190 (278)
160 3hr8_A Protein RECA; alpha and 98.7 2.5E-08 8.6E-13 105.2 8.6 155 51-251 48-230 (356)
161 1ixz_A ATP-dependent metallopr 98.7 6.4E-11 2.2E-15 118.7 -11.5 129 48-201 37-170 (254)
162 1svm_A Large T antigen; AAA+ f 98.6 8.8E-11 3E-15 125.1 -12.0 161 49-222 156-355 (377)
163 1oix_A RAS-related protein RAB 98.6 3.2E-09 1.1E-13 101.5 -0.2 37 181-219 152-188 (191)
164 1qhl_A Protein (cell division 98.6 1.2E-09 4.2E-14 108.3 -4.0 74 26-116 7-91 (227)
165 1t9h_A YLOQ, probable GTPase E 98.6 8.7E-09 3E-13 106.6 1.8 71 57-128 168-247 (307)
166 2ius_A DNA translocase FTSK; n 98.6 2.5E-09 8.6E-14 117.8 -2.6 50 185-235 289-343 (512)
167 2ce7_A Cell division protein F 98.6 1.4E-07 4.7E-12 103.4 10.0 113 50-235 39-165 (476)
168 4a1f_A DNAB helicase, replicat 98.4 1.6E-07 5.4E-12 98.4 4.8 156 50-233 34-205 (338)
169 2f9l_A RAB11B, member RAS onco 98.4 4.6E-08 1.6E-12 93.8 0.6 38 182-221 129-166 (199)
170 3bh0_A DNAB-like replicative h 98.4 3.3E-07 1.1E-11 95.1 6.9 172 50-249 56-264 (315)
171 3kta_A Chromosome segregation 98.3 2.7E-07 9.4E-12 87.1 4.9 37 51-88 14-52 (182)
172 2xau_A PRE-mRNA-splicing facto 98.3 1.9E-07 6.5E-12 108.3 4.0 74 178-252 194-270 (773)
173 4eun_A Thermoresistant glucoki 98.3 3.1E-08 1.1E-12 95.5 -2.6 58 56-118 23-82 (200)
174 3nwj_A ATSK2; P loop, shikimat 98.3 4.4E-08 1.5E-12 98.5 -1.7 52 28-86 17-72 (250)
175 2e87_A Hypothetical protein PH 98.3 1.1E-06 3.6E-11 92.8 8.5 125 61-235 166-293 (357)
176 2q6t_A DNAB replication FORK h 98.3 1.9E-06 6.6E-11 93.5 10.4 156 50-232 188-361 (444)
177 2j41_A Guanylate kinase; GMP, 98.2 3E-07 1E-11 88.3 2.2 31 58-88 2-32 (207)
178 3uie_A Adenylyl-sulfate kinase 98.2 2.5E-08 8.6E-13 96.2 -5.5 53 47-101 10-64 (200)
179 2qtf_A Protein HFLX, GTP-bindi 98.2 9.3E-07 3.2E-11 93.6 6.0 148 61-222 177-353 (364)
180 4e22_A Cytidylate kinase; P-lo 98.2 1.3E-07 4.3E-12 95.0 -0.8 64 50-117 18-96 (252)
181 1jjv_A Dephospho-COA kinase; P 98.2 1.9E-07 6.4E-12 90.1 0.2 127 64-249 4-131 (206)
182 1fnn_A CDC6P, cell division co 98.2 4.1E-06 1.4E-10 88.0 10.6 43 192-235 125-170 (389)
183 2z4s_A Chromosomal replication 98.2 2E-06 6.9E-11 93.3 7.9 96 192-289 194-297 (440)
184 2dhr_A FTSH; AAA+ protein, hex 98.2 4.9E-08 1.7E-12 107.5 -4.9 130 49-203 53-187 (499)
185 2dy1_A Elongation factor G; tr 98.2 2.9E-07 1E-11 105.0 1.3 131 56-236 3-138 (665)
186 1zu4_A FTSY; GTPase, signal re 98.2 1.9E-06 6.4E-11 89.7 7.0 49 52-101 95-143 (320)
187 3a00_A Guanylate kinase, GMP k 98.1 6.6E-07 2.3E-11 85.2 1.6 26 62-87 1-26 (186)
188 1kgd_A CASK, peripheral plasma 98.1 1.1E-06 3.6E-11 83.4 2.0 39 60-98 3-41 (180)
189 3vaa_A Shikimate kinase, SK; s 98.1 1.8E-06 6E-11 83.1 3.6 40 47-86 10-49 (199)
190 3t34_A Dynamin-related protein 98.0 2.1E-06 7.3E-11 90.4 4.1 34 49-85 24-57 (360)
191 1ega_A Protein (GTP-binding pr 98.0 2.3E-06 7.8E-11 88.2 3.8 153 62-247 8-171 (301)
192 3b9p_A CG5977-PA, isoform A; A 98.0 3E-05 1E-09 78.8 11.3 27 60-86 52-78 (297)
193 1v5w_A DMC1, meiotic recombina 98.0 1.1E-05 3.8E-10 84.5 8.1 29 57-85 117-145 (343)
194 2vp4_A Deoxynucleoside kinase; 97.9 2.6E-06 9E-11 83.9 2.6 40 56-100 14-53 (230)
195 2z43_A DNA repair and recombin 97.9 1E-05 3.6E-10 84.0 6.7 29 57-85 102-130 (324)
196 2qby_A CDC6 homolog 1, cell di 97.8 3.4E-06 1.2E-10 88.2 1.4 27 60-86 43-69 (386)
197 1u94_A RECA protein, recombina 97.8 3.5E-05 1.2E-09 81.2 8.5 34 51-84 50-85 (356)
198 3tau_A Guanylate kinase, GMP k 97.8 8.4E-06 2.9E-10 79.0 3.3 36 60-95 6-41 (208)
199 2ffh_A Protein (FFH); SRP54, s 97.8 4.7E-05 1.6E-09 82.0 9.0 153 53-232 91-246 (425)
200 3cf0_A Transitional endoplasmi 97.8 3.2E-05 1.1E-09 79.3 7.2 38 58-98 45-82 (301)
201 2qt1_A Nicotinamide riboside k 97.8 1.5E-05 5E-10 76.8 4.3 29 58-86 17-45 (207)
202 1lv7_A FTSH; alpha/beta domain 97.7 0.0001 3.4E-09 73.4 10.0 34 51-86 36-69 (257)
203 1knq_A Gluconate kinase; ALFA/ 97.7 9E-06 3.1E-10 76.0 2.0 37 60-101 6-42 (175)
204 3m6a_A ATP-dependent protease 97.7 3.6E-06 1.2E-10 93.8 -1.2 48 49-98 96-143 (543)
205 3ney_A 55 kDa erythrocyte memb 97.7 1.6E-05 5.5E-10 76.8 2.9 30 58-87 15-44 (197)
206 1rz3_A Hypothetical protein rb 97.6 8.7E-06 3E-10 78.4 0.7 41 58-99 18-58 (201)
207 3bgw_A DNAB-like replicative h 97.6 0.0001 3.6E-09 79.9 8.7 160 50-233 185-359 (444)
208 1ypw_A Transitional endoplasmi 97.6 3.1E-05 1.1E-09 90.2 4.7 30 58-87 234-263 (806)
209 2b8t_A Thymidine kinase; deoxy 97.6 8.5E-05 2.9E-09 73.1 7.1 52 193-249 90-150 (223)
210 3tqc_A Pantothenate kinase; bi 97.6 6.1E-06 2.1E-10 85.8 -1.2 41 47-87 71-117 (321)
211 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 4.4E-05 1.5E-09 70.3 4.1 31 53-84 15-45 (149)
212 2wjg_A FEOB, ferrous iron tran 97.5 3.5E-05 1.2E-09 72.2 2.6 22 64-85 9-30 (188)
213 3kl4_A SRP54, signal recogniti 97.5 0.00015 5.2E-09 78.2 7.8 37 61-98 96-132 (433)
214 3llm_A ATP-dependent RNA helic 97.5 6.2E-05 2.1E-09 74.1 4.3 55 190-244 174-229 (235)
215 1kag_A SKI, shikimate kinase I 97.5 4.1E-05 1.4E-09 71.2 2.5 26 61-86 3-28 (173)
216 3cr8_A Sulfate adenylyltranfer 97.4 2.1E-05 7.1E-10 87.6 0.4 42 58-100 365-408 (552)
217 1l8q_A Chromosomal replication 97.4 8.6E-05 2.9E-09 76.6 4.7 44 192-235 98-142 (324)
218 2w58_A DNAI, primosome compone 97.4 0.00014 4.8E-09 69.4 5.4 24 63-86 55-78 (202)
219 4fcw_A Chaperone protein CLPB; 97.4 0.00033 1.1E-08 71.3 8.3 25 63-87 48-72 (311)
220 3ice_A Transcription terminati 97.4 2.1E-05 7E-10 83.3 -0.9 52 28-86 133-198 (422)
221 3h4m_A Proteasome-activating n 97.3 0.00038 1.3E-08 70.0 8.3 28 59-86 48-75 (285)
222 3bos_A Putative DNA replicatio 97.3 0.00015 5E-09 70.4 5.0 43 193-235 105-149 (242)
223 2i1q_A DNA repair and recombin 97.3 0.00063 2.2E-08 70.2 10.0 34 51-84 86-120 (322)
224 3lxx_A GTPase IMAP family memb 97.3 0.0011 3.8E-08 65.0 10.8 42 192-233 112-155 (239)
225 2p67_A LAO/AO transport system 97.3 1.9E-05 6.5E-10 82.7 -2.2 52 47-99 41-92 (341)
226 2o5v_A DNA replication and rep 97.2 8.6E-05 2.9E-09 78.3 2.0 57 141-200 261-328 (359)
227 3cmw_A Protein RECA, recombina 97.2 0.00048 1.7E-08 85.1 8.3 28 58-85 728-755 (1706)
228 3qks_A DNA double-strand break 97.2 0.00021 7.3E-09 69.0 4.1 31 53-84 15-45 (203)
229 3d8b_A Fidgetin-like protein 1 97.1 0.0019 6.6E-08 67.7 11.4 27 60-86 115-141 (357)
230 4eaq_A DTMP kinase, thymidylat 97.1 0.0002 7E-09 70.5 3.6 37 51-87 12-51 (229)
231 2www_A Methylmalonic aciduria 97.1 0.00011 3.7E-09 77.3 1.2 40 60-100 72-111 (349)
232 1q57_A DNA primase/helicase; d 97.1 0.00059 2E-08 75.0 7.1 172 50-249 230-440 (503)
233 1xp8_A RECA protein, recombina 97.1 0.001 3.5E-08 70.3 8.4 27 58-84 70-96 (366)
234 1njg_A DNA polymerase III subu 97.0 0.00021 7.1E-09 68.7 2.6 42 192-235 126-167 (250)
235 1cke_A CK, MSSA, protein (cyti 97.0 0.00025 8.5E-09 68.8 3.1 57 61-117 4-74 (227)
236 2pez_A Bifunctional 3'-phospho 97.0 0.00028 9.6E-09 66.1 3.2 38 60-99 3-42 (179)
237 1mky_A Probable GTP-binding pr 97.0 0.00056 1.9E-08 73.9 6.0 38 63-100 181-229 (439)
238 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.0061 2.1E-07 62.9 13.3 28 59-86 42-69 (322)
239 3io5_A Recombination and repai 97.0 0.00069 2.3E-08 70.0 5.9 27 57-84 24-51 (333)
240 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.0024 8.2E-08 63.0 9.5 26 60-85 37-62 (262)
241 1y63_A LMAJ004144AAA protein; 97.0 0.00034 1.2E-08 66.1 3.1 32 54-85 2-33 (184)
242 3auy_A DNA double-strand break 97.0 0.00068 2.3E-08 71.6 5.7 31 52-83 16-46 (371)
243 2qor_A Guanylate kinase; phosp 96.9 0.00034 1.2E-08 67.2 3.0 29 58-86 8-36 (204)
244 2v1u_A Cell division control p 96.9 0.00055 1.9E-08 71.3 4.8 27 60-86 42-68 (387)
245 3cmu_A Protein RECA, recombina 96.9 0.0018 6.1E-08 81.2 9.5 34 51-84 370-405 (2050)
246 2qag_A Septin-2, protein NEDD5 96.9 0.00011 3.9E-09 77.4 -0.9 56 28-98 17-72 (361)
247 2gj8_A MNME, tRNA modification 96.9 0.00048 1.6E-08 64.0 3.4 27 60-86 2-28 (172)
248 1m7g_A Adenylylsulfate kinase; 96.9 0.00017 5.9E-09 69.6 0.3 40 58-98 21-62 (211)
249 1ypw_A Transitional endoplasmi 96.8 9.5E-05 3.2E-09 86.1 -2.5 32 55-86 504-535 (806)
250 1sxj_D Activator 1 41 kDa subu 96.8 0.00019 6.6E-09 74.2 0.0 42 193-236 134-175 (353)
251 3cmw_A Protein RECA, recombina 96.8 0.0023 7.9E-08 79.2 9.2 34 51-84 370-405 (1706)
252 1xx6_A Thymidine kinase; NESG, 96.8 0.0015 5.2E-08 62.5 6.1 52 193-249 82-142 (191)
253 1g5t_A COB(I)alamin adenosyltr 96.7 0.0056 1.9E-07 58.8 9.4 65 185-250 111-179 (196)
254 2if2_A Dephospho-COA kinase; a 96.7 0.00058 2E-08 65.2 2.5 21 64-84 3-23 (204)
255 1f6b_A SAR1; gtpases, N-termin 96.7 0.00024 8E-09 67.7 -0.5 36 49-85 13-48 (198)
256 1m2o_B GTP-binding protein SAR 96.7 0.00063 2.1E-08 64.2 2.5 35 50-85 12-46 (190)
257 2orw_A Thymidine kinase; TMTK, 96.6 0.001 3.6E-08 63.1 3.9 52 193-249 77-137 (184)
258 3n70_A Transport activator; si 96.6 0.0038 1.3E-07 56.4 7.2 42 193-236 77-118 (145)
259 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00023 7.7E-09 74.7 -1.2 38 49-86 9-48 (359)
260 2qgz_A Helicase loader, putati 96.6 0.002 6.9E-08 66.2 5.8 24 62-85 152-175 (308)
261 2wji_A Ferrous iron transport 96.6 0.0011 3.9E-08 60.7 3.5 23 64-86 5-27 (165)
262 2zts_A Putative uncharacterize 96.6 0.00022 7.6E-09 69.8 -1.5 58 192-249 135-206 (251)
263 3cm0_A Adenylate kinase; ATP-b 96.5 0.0012 4.2E-08 61.7 3.5 25 60-84 2-26 (186)
264 2yvu_A Probable adenylyl-sulfa 96.5 0.0014 4.7E-08 61.7 3.8 29 59-87 10-38 (186)
265 1sxj_C Activator 1 40 kDa subu 96.5 0.00029 9.8E-09 73.2 -1.3 41 47-87 29-71 (340)
266 2orv_A Thymidine kinase; TP4A 96.5 0.0085 2.9E-07 59.0 9.3 52 192-249 90-150 (234)
267 3t61_A Gluconokinase; PSI-biol 96.5 0.001 3.4E-08 63.5 2.4 24 62-85 18-41 (202)
268 2ohf_A Protein OLA1, GTP-bindi 96.5 0.0012 4.2E-08 70.2 3.3 30 56-85 16-45 (396)
269 2p5t_B PEZT; postsegregational 96.4 0.00069 2.3E-08 67.5 1.1 45 51-99 22-66 (253)
270 3co5_A Putative two-component 96.4 0.0042 1.4E-07 56.1 6.3 41 193-234 76-116 (143)
271 1qhx_A CPT, protein (chloramph 96.4 0.0018 6.1E-08 60.1 3.6 25 62-86 3-27 (178)
272 3kb2_A SPBC2 prophage-derived 96.4 0.0017 5.7E-08 59.7 3.3 22 64-85 3-24 (173)
273 1j8m_F SRP54, signal recogniti 96.3 0.00043 1.5E-08 71.1 -1.3 46 53-100 89-135 (297)
274 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0093 3.2E-07 61.7 8.7 28 57-84 118-145 (331)
275 2zej_A Dardarin, leucine-rich 96.3 0.0019 6.5E-08 60.4 3.3 22 64-85 4-25 (184)
276 4b4t_K 26S protease regulatory 96.3 0.017 5.9E-07 62.1 11.1 27 59-85 203-229 (428)
277 2j9r_A Thymidine kinase; TK1, 96.3 0.007 2.4E-07 58.9 7.3 52 193-249 102-162 (214)
278 2qp9_X Vacuolar protein sortin 96.3 0.013 4.3E-07 61.4 9.7 26 60-85 82-107 (355)
279 1q3t_A Cytidylate kinase; nucl 96.2 0.0019 6.4E-08 63.4 3.0 28 58-85 12-39 (236)
280 3t15_A Ribulose bisphosphate c 96.2 0.0034 1.2E-07 64.0 5.0 27 60-86 34-60 (293)
281 1np6_A Molybdopterin-guanine d 96.2 0.0019 6.4E-08 61.0 2.8 38 63-100 7-46 (174)
282 1lw7_A Transcriptional regulat 96.2 0.00082 2.8E-08 70.7 0.2 43 160-202 275-329 (365)
283 1kht_A Adenylate kinase; phosp 96.2 0.0024 8.3E-08 59.6 3.5 25 61-85 2-26 (192)
284 2chg_A Replication factor C sm 96.2 0.0086 2.9E-07 56.5 7.4 42 192-235 102-143 (226)
285 3vfd_A Spastin; ATPase, microt 96.2 0.025 8.7E-07 59.7 11.6 25 61-85 147-171 (389)
286 3hu3_A Transitional endoplasmi 96.2 0.004 1.4E-07 68.3 5.4 27 59-85 235-261 (489)
287 2rhm_A Putative kinase; P-loop 96.1 0.0024 8.3E-08 59.9 3.1 26 60-85 3-28 (193)
288 3cmu_A Protein RECA, recombina 96.1 0.0096 3.3E-07 74.7 9.1 50 51-100 719-770 (2050)
289 3r20_A Cytidylate kinase; stru 96.1 0.0027 9.1E-08 62.8 3.4 24 62-85 9-32 (233)
290 2zan_A Vacuolar protein sortin 96.1 0.023 7.8E-07 61.4 10.8 27 60-86 165-191 (444)
291 3syl_A Protein CBBX; photosynt 96.0 0.015 5.1E-07 58.8 8.6 27 60-86 65-91 (309)
292 4b4t_J 26S protease regulatory 96.0 0.028 9.5E-07 59.9 10.9 26 60-85 180-205 (405)
293 3lw7_A Adenylate kinase relate 96.0 0.0034 1.2E-07 57.3 3.3 19 64-82 3-21 (179)
294 3trf_A Shikimate kinase, SK; a 96.0 0.0036 1.2E-07 58.4 3.5 25 61-85 4-28 (185)
295 2r8r_A Sensor protein; KDPD, P 96.0 0.0065 2.2E-07 59.7 5.3 41 192-232 84-125 (228)
296 3eie_A Vacuolar protein sortin 96.0 0.016 5.5E-07 59.6 8.6 26 60-85 49-74 (322)
297 2ze6_A Isopentenyl transferase 96.0 0.0037 1.3E-07 62.3 3.6 23 63-85 2-24 (253)
298 1vht_A Dephospho-COA kinase; s 95.9 0.0042 1.4E-07 59.9 3.8 24 61-84 3-26 (218)
299 3iij_A Coilin-interacting nucl 95.9 0.0035 1.2E-07 58.4 3.0 25 60-84 9-33 (180)
300 1ex7_A Guanylate kinase; subst 95.9 0.0037 1.3E-07 59.6 3.2 22 64-85 3-24 (186)
301 2v54_A DTMP kinase, thymidylat 95.9 0.0043 1.5E-07 58.7 3.6 26 61-86 3-28 (204)
302 2plr_A DTMP kinase, probable t 95.9 0.0046 1.6E-07 58.7 3.8 26 61-86 3-28 (213)
303 2jaq_A Deoxyguanosine kinase; 95.9 0.0041 1.4E-07 58.7 3.4 22 64-85 2-23 (205)
304 4b4t_L 26S protease subunit RP 95.9 0.035 1.2E-06 59.8 10.9 64 191-260 273-353 (437)
305 1ly1_A Polynucleotide kinase; 95.8 0.005 1.7E-07 56.8 3.6 22 63-84 3-24 (181)
306 4dcu_A GTP-binding protein ENG 95.8 0.0049 1.7E-07 66.8 4.0 22 64-85 25-46 (456)
307 3pfi_A Holliday junction ATP-d 95.8 0.031 1.1E-06 57.3 9.9 24 63-86 56-79 (338)
308 2wwf_A Thymidilate kinase, put 95.7 0.0048 1.7E-07 58.8 3.3 26 60-85 8-33 (212)
309 1gvn_B Zeta; postsegregational 95.7 0.0048 1.7E-07 62.7 3.4 37 59-98 30-66 (287)
310 2c95_A Adenylate kinase 1; tra 95.7 0.005 1.7E-07 57.8 3.1 26 60-85 7-32 (196)
311 1via_A Shikimate kinase; struc 95.7 0.0051 1.8E-07 57.1 3.1 22 64-85 6-27 (175)
312 3k53_A Ferrous iron transport 95.6 0.0046 1.6E-07 62.0 2.9 23 64-86 5-27 (271)
313 1nn5_A Similar to deoxythymidy 95.6 0.0057 1.9E-07 58.3 3.2 27 59-85 6-32 (215)
314 1uf9_A TT1252 protein; P-loop, 95.6 0.0061 2.1E-07 57.6 3.4 24 62-85 8-31 (203)
315 1tev_A UMP-CMP kinase; ploop, 95.6 0.007 2.4E-07 56.5 3.7 24 61-84 2-25 (196)
316 1gtv_A TMK, thymidylate kinase 95.6 0.0027 9.2E-08 60.7 0.7 23 64-86 2-24 (214)
317 1jr3_A DNA polymerase III subu 95.6 0.025 8.4E-07 58.6 8.1 42 192-235 119-160 (373)
318 1nks_A Adenylate kinase; therm 95.5 0.0066 2.2E-07 56.6 3.2 22 64-85 3-24 (194)
319 4b4t_M 26S protease regulatory 95.5 0.037 1.3E-06 59.5 9.2 27 59-85 212-238 (434)
320 4b4t_H 26S protease regulatory 95.4 0.045 1.6E-06 59.2 9.8 27 59-85 240-266 (467)
321 1xjc_A MOBB protein homolog; s 95.4 0.0082 2.8E-07 56.3 3.4 24 63-86 5-28 (169)
322 2nzj_A GTP-binding protein REM 95.4 0.0082 2.8E-07 54.7 3.3 23 64-86 6-28 (175)
323 2erx_A GTP-binding protein DI- 95.4 0.0083 2.8E-07 54.3 3.3 22 64-85 5-26 (172)
324 4b4t_I 26S protease regulatory 95.4 0.059 2E-06 57.7 10.3 62 193-260 276-354 (437)
325 3q72_A GTP-binding protein RAD 95.4 0.0068 2.3E-07 54.8 2.7 23 64-86 4-26 (166)
326 2bwj_A Adenylate kinase 5; pho 95.3 0.0063 2.2E-07 57.3 2.5 27 59-85 9-35 (199)
327 1aky_A Adenylate kinase; ATP:A 95.3 0.0091 3.1E-07 57.6 3.6 26 60-85 2-27 (220)
328 2ged_A SR-beta, signal recogni 95.3 0.0067 2.3E-07 56.6 2.6 25 62-86 48-72 (193)
329 3ihw_A Centg3; RAS, centaurin, 95.3 0.013 4.4E-07 54.7 4.6 22 64-85 22-43 (184)
330 1ko7_A HPR kinase/phosphatase; 95.3 0.01 3.6E-07 61.1 4.0 37 48-85 131-167 (314)
331 1ojl_A Transcriptional regulat 95.3 0.05 1.7E-06 55.6 9.1 27 60-86 23-49 (304)
332 3q85_A GTP-binding protein REM 95.3 0.0094 3.2E-07 54.0 3.3 22 65-86 5-26 (169)
333 1z2a_A RAS-related protein RAB 95.3 0.0074 2.5E-07 54.5 2.5 22 64-85 7-28 (168)
334 2vli_A Antibiotic resistance p 95.3 0.0066 2.3E-07 56.4 2.2 25 61-85 4-28 (183)
335 2z0h_A DTMP kinase, thymidylat 95.2 0.0095 3.3E-07 55.9 3.4 23 64-86 2-24 (197)
336 3tw8_B RAS-related protein RAB 95.2 0.0089 3E-07 54.7 3.0 22 64-85 11-32 (181)
337 1qvr_A CLPB protein; coiled co 95.2 0.028 9.7E-07 65.7 7.9 37 63-99 589-625 (854)
338 3b1v_A Ferrous iron uptake tra 95.2 0.01 3.5E-07 59.9 3.6 23 64-86 5-27 (272)
339 2lkc_A Translation initiation 95.2 0.012 4.1E-07 53.8 3.8 25 61-85 7-31 (178)
340 1kao_A RAP2A; GTP-binding prot 95.2 0.0082 2.8E-07 53.9 2.6 22 64-85 5-26 (167)
341 2dyk_A GTP-binding protein; GT 95.1 0.0085 2.9E-07 53.7 2.6 23 64-86 3-25 (161)
342 1fzq_A ADP-ribosylation factor 95.1 0.0087 3E-07 55.7 2.7 23 63-85 17-39 (181)
343 1u8z_A RAS-related protein RAL 95.1 0.0085 2.9E-07 53.9 2.5 22 64-85 6-27 (168)
344 3ake_A Cytidylate kinase; CMP 95.1 0.011 3.7E-07 56.0 3.4 22 64-85 4-25 (208)
345 1zd8_A GTP:AMP phosphotransfer 95.1 0.01 3.4E-07 57.6 3.1 26 60-85 5-30 (227)
346 2ce2_X GTPase HRAS; signaling 95.1 0.0079 2.7E-07 53.9 2.2 22 64-85 5-26 (166)
347 2cdn_A Adenylate kinase; phosp 95.1 0.013 4.3E-07 55.6 3.7 25 61-85 19-43 (201)
348 1z0j_A RAB-22, RAS-related pro 95.1 0.0093 3.2E-07 53.9 2.6 23 64-86 8-30 (170)
349 3lxw_A GTPase IMAP family memb 95.0 0.011 3.7E-07 58.5 3.3 23 64-86 23-45 (247)
350 1svi_A GTP-binding protein YSX 95.0 0.0094 3.2E-07 55.6 2.7 24 63-86 24-47 (195)
351 1z08_A RAS-related protein RAB 95.0 0.0094 3.2E-07 54.0 2.6 22 64-85 8-29 (170)
352 1ek0_A Protein (GTP-binding pr 95.0 0.0095 3.2E-07 53.8 2.5 23 64-86 5-27 (170)
353 2bjv_A PSP operon transcriptio 95.0 0.069 2.4E-06 52.8 9.0 28 60-87 27-54 (265)
354 1ukz_A Uridylate kinase; trans 95.0 0.013 4.5E-07 55.5 3.6 25 61-85 14-38 (203)
355 1wms_A RAB-9, RAB9, RAS-relate 95.0 0.0098 3.3E-07 54.4 2.6 22 64-85 9-30 (177)
356 3fb4_A Adenylate kinase; psych 95.0 0.012 4.2E-07 56.3 3.4 22 64-85 2-23 (216)
357 1c1y_A RAS-related protein RAP 95.0 0.0098 3.4E-07 53.6 2.5 22 64-85 5-26 (167)
358 1ky3_A GTP-binding protein YPT 95.0 0.0099 3.4E-07 54.4 2.6 23 64-86 10-32 (182)
359 3pqc_A Probable GTP-binding pr 95.0 0.01 3.5E-07 55.1 2.7 23 64-86 25-47 (195)
360 1g16_A RAS-related protein SEC 95.0 0.0089 3E-07 54.1 2.2 23 64-86 5-27 (170)
361 4ag6_A VIRB4 ATPase, type IV s 94.9 0.0045 1.6E-07 65.5 0.2 46 191-236 261-309 (392)
362 1zuh_A Shikimate kinase; alpha 94.9 0.014 4.7E-07 53.7 3.4 24 62-85 7-30 (168)
363 2pbr_A DTMP kinase, thymidylat 94.9 0.013 4.4E-07 54.7 3.3 22 64-85 2-23 (195)
364 1e6c_A Shikimate kinase; phosp 94.9 0.012 4E-07 54.1 2.8 23 63-85 3-25 (173)
365 2cxx_A Probable GTP-binding pr 94.9 0.011 3.7E-07 54.8 2.6 22 65-86 4-25 (190)
366 1jal_A YCHF protein; nucleotid 94.9 0.017 5.9E-07 60.7 4.4 37 62-98 2-48 (363)
367 3nbx_X ATPase RAVA; AAA+ ATPas 94.9 0.043 1.5E-06 60.2 7.7 37 50-86 29-65 (500)
368 1zak_A Adenylate kinase; ATP:A 94.9 0.011 3.8E-07 57.1 2.7 25 61-85 4-28 (222)
369 2hxs_A RAB-26, RAS-related pro 94.8 0.013 4.5E-07 53.6 3.0 22 64-85 8-29 (178)
370 3pxi_A Negative regulator of g 94.8 0.041 1.4E-06 63.4 7.8 23 64-86 523-545 (758)
371 3a4m_A L-seryl-tRNA(SEC) kinas 94.8 0.016 5.4E-07 57.8 3.8 25 61-85 3-27 (260)
372 2fn4_A P23, RAS-related protei 94.8 0.01 3.5E-07 54.3 2.2 22 64-85 11-32 (181)
373 2pt5_A Shikimate kinase, SK; a 94.8 0.015 5.2E-07 53.1 3.4 22 64-85 2-23 (168)
374 1r2q_A RAS-related protein RAB 94.8 0.012 4E-07 53.2 2.5 22 64-85 8-29 (170)
375 1moz_A ARL1, ADP-ribosylation 94.8 0.0086 3E-07 55.1 1.7 24 61-84 17-40 (183)
376 3dl0_A Adenylate kinase; phosp 94.8 0.015 5E-07 55.8 3.4 22 64-85 2-23 (216)
377 4dsu_A GTPase KRAS, isoform 2B 94.8 0.012 4E-07 54.4 2.6 22 64-85 6-27 (189)
378 1qf9_A UMP/CMP kinase, protein 94.8 0.014 4.9E-07 54.2 3.3 24 62-85 6-29 (194)
379 3clv_A RAB5 protein, putative; 94.8 0.012 4E-07 54.8 2.6 22 64-85 9-30 (208)
380 2iyv_A Shikimate kinase, SK; t 94.8 0.012 4.1E-07 54.8 2.6 23 63-85 3-25 (184)
381 3u61_B DNA polymerase accessor 94.8 0.023 7.8E-07 58.1 4.9 41 193-235 106-147 (324)
382 1upt_A ARL1, ADP-ribosylation 94.8 0.012 4.1E-07 53.3 2.5 23 63-85 8-30 (171)
383 3cf2_A TER ATPase, transitiona 94.7 0.078 2.7E-06 61.3 9.7 28 59-86 235-262 (806)
384 2oil_A CATX-8, RAS-related pro 94.7 0.013 4.3E-07 54.7 2.6 23 64-86 27-49 (193)
385 3bc1_A RAS-related protein RAB 94.7 0.013 4.3E-07 54.2 2.5 22 64-85 13-34 (195)
386 3tlx_A Adenylate kinase 2; str 94.7 0.018 6.1E-07 56.8 3.8 25 60-84 27-51 (243)
387 1r8s_A ADP-ribosylation factor 94.7 0.013 4.5E-07 52.8 2.5 21 65-85 3-23 (164)
388 3t5d_A Septin-7; GTP-binding p 94.7 0.013 4.4E-07 58.8 2.7 23 64-86 10-32 (274)
389 1wf3_A GTP-binding protein; GT 94.7 0.016 5.6E-07 59.2 3.5 26 60-86 6-31 (301)
390 1ksh_A ARF-like protein 2; sma 94.6 0.017 5.8E-07 53.4 3.2 26 61-86 17-42 (186)
391 3iby_A Ferrous iron transport 94.6 0.015 5E-07 58.0 2.9 23 64-86 3-25 (256)
392 2g6b_A RAS-related protein RAB 94.6 0.014 4.9E-07 53.4 2.5 23 64-86 12-34 (180)
393 3iev_A GTP-binding protein ERA 94.6 0.018 6E-07 59.0 3.5 23 64-86 12-34 (308)
394 2a9k_A RAS-related protein RAL 94.6 0.014 4.9E-07 53.5 2.5 22 64-85 20-41 (187)
395 3cbq_A GTP-binding protein REM 94.6 0.014 4.8E-07 55.1 2.5 22 64-85 25-46 (195)
396 1z0f_A RAB14, member RAS oncog 94.6 0.015 5E-07 53.1 2.5 23 64-86 17-39 (179)
397 2y8e_A RAB-protein 6, GH09086P 94.5 0.013 4.5E-07 53.4 2.2 22 64-85 16-37 (179)
398 2qmh_A HPR kinase/phosphorylas 94.5 0.031 1.1E-06 53.8 4.8 36 49-85 22-57 (205)
399 2efe_B Small GTP-binding prote 94.5 0.015 5.2E-07 53.2 2.6 23 64-86 14-36 (181)
400 3con_A GTPase NRAS; structural 94.5 0.015 5.2E-07 54.0 2.5 22 64-85 23-44 (190)
401 1uj2_A Uridine-cytidine kinase 94.5 0.019 6.5E-07 56.8 3.4 23 63-85 23-45 (252)
402 3t1o_A Gliding protein MGLA; G 94.5 0.016 5.3E-07 53.8 2.5 24 64-87 16-39 (198)
403 1nrj_B SR-beta, signal recogni 94.5 0.015 5.3E-07 55.4 2.5 23 64-86 14-36 (218)
404 1jbk_A CLPB protein; beta barr 94.4 0.023 8E-07 52.1 3.6 26 60-85 41-66 (195)
405 2grj_A Dephospho-COA kinase; T 94.4 0.021 7.2E-07 54.5 3.4 25 61-85 11-35 (192)
406 2xtp_A GTPase IMAP family memb 94.4 0.018 6E-07 57.0 2.9 23 64-86 24-46 (260)
407 2il1_A RAB12; G-protein, GDP, 94.4 0.019 6.6E-07 53.7 3.0 22 64-85 28-49 (192)
408 2bov_A RAla, RAS-related prote 94.4 0.016 5.6E-07 54.3 2.5 22 64-85 16-37 (206)
409 3a1s_A Iron(II) transport prot 94.4 0.02 6.9E-07 57.1 3.3 23 64-86 7-29 (258)
410 1vg8_A RAS-related protein RAB 94.4 0.017 5.7E-07 54.4 2.6 23 64-86 10-32 (207)
411 1zbd_A Rabphilin-3A; G protein 94.4 0.021 7.1E-07 53.7 3.2 23 64-86 10-32 (203)
412 2gf9_A RAS-related protein RAB 94.3 0.017 5.9E-07 53.7 2.5 23 64-86 24-46 (189)
413 2bme_A RAB4A, RAS-related prot 94.3 0.015 5.2E-07 53.6 2.2 22 64-85 12-33 (186)
414 2dby_A GTP-binding protein; GD 94.3 0.016 5.5E-07 61.1 2.5 21 65-85 4-24 (368)
415 3tkl_A RAS-related protein RAB 94.3 0.017 6E-07 53.7 2.5 23 64-86 18-40 (196)
416 3dm5_A SRP54, signal recogniti 94.3 0.24 8.1E-06 53.4 11.7 26 61-86 99-124 (443)
417 1a7j_A Phosphoribulokinase; tr 94.3 0.012 4.1E-07 59.9 1.4 25 61-85 4-28 (290)
418 2gf0_A GTP-binding protein DI- 94.3 0.016 5.6E-07 54.0 2.2 22 64-85 10-31 (199)
419 3kkq_A RAS-related protein M-R 94.3 0.018 6.3E-07 53.0 2.5 22 64-85 20-41 (183)
420 3i8s_A Ferrous iron transport 94.3 0.02 6.7E-07 57.6 2.9 23 64-86 5-27 (274)
421 2qu8_A Putative nucleolar GTP- 94.2 0.022 7.6E-07 55.0 3.2 23 63-85 30-52 (228)
422 1jwy_B Dynamin A GTPase domain 94.2 0.019 6.6E-07 58.3 2.9 23 64-86 26-48 (315)
423 3v9p_A DTMP kinase, thymidylat 94.2 0.02 6.7E-07 56.3 2.8 29 58-86 21-49 (227)
424 2xb4_A Adenylate kinase; ATP-b 94.2 0.024 8.2E-07 55.0 3.4 22 64-85 2-23 (223)
425 4bas_A ADP-ribosylation factor 94.2 0.023 7.8E-07 53.0 3.1 24 62-85 17-40 (199)
426 1mh1_A RAC1; GTP-binding, GTPa 94.2 0.019 6.5E-07 52.7 2.5 22 64-85 7-28 (186)
427 2h57_A ADP-ribosylation factor 94.2 0.017 5.9E-07 53.7 2.2 23 64-86 23-45 (190)
428 2fg5_A RAB-22B, RAS-related pr 94.2 0.017 5.8E-07 54.0 2.2 23 64-86 25-47 (192)
429 3tqf_A HPR(Ser) kinase; transf 94.2 0.036 1.2E-06 52.2 4.3 35 49-84 4-38 (181)
430 3be4_A Adenylate kinase; malar 94.2 0.022 7.5E-07 54.9 3.0 25 61-85 4-28 (217)
431 3umf_A Adenylate kinase; rossm 94.2 0.027 9.4E-07 54.9 3.7 28 58-85 25-52 (217)
432 4edh_A DTMP kinase, thymidylat 94.2 0.028 9.5E-07 54.6 3.7 27 60-86 4-30 (213)
433 1m7b_A RND3/RHOE small GTP-bin 94.2 0.017 5.9E-07 53.5 2.2 22 64-85 9-30 (184)
434 1zj6_A ADP-ribosylation factor 94.2 0.022 7.5E-07 52.9 2.9 24 62-85 16-39 (187)
435 1z06_A RAS-related protein RAB 94.1 0.02 6.9E-07 53.2 2.6 22 64-85 22-43 (189)
436 2o52_A RAS-related protein RAB 94.1 0.022 7.6E-07 53.7 2.9 22 64-85 27-48 (200)
437 4dhe_A Probable GTP-binding pr 94.1 0.012 3.9E-07 56.4 0.8 24 63-86 30-53 (223)
438 2cjw_A GTP-binding protein GEM 94.1 0.02 7E-07 53.8 2.5 21 64-84 8-28 (192)
439 2f7s_A C25KG, RAS-related prot 94.1 0.026 9E-07 53.7 3.3 23 64-86 27-49 (217)
440 2f6r_A COA synthase, bifunctio 94.1 0.023 7.9E-07 57.4 3.0 23 62-84 75-97 (281)
441 2a5j_A RAS-related protein RAB 94.0 0.022 7.4E-07 53.2 2.6 23 64-86 23-45 (191)
442 2h17_A ADP-ribosylation factor 94.0 0.021 7.1E-07 52.8 2.4 22 64-85 23-44 (181)
443 3bwd_D RAC-like GTP-binding pr 94.0 0.022 7.4E-07 52.2 2.5 22 64-85 10-31 (182)
444 1ltq_A Polynucleotide kinase; 94.0 0.028 9.6E-07 56.7 3.6 22 63-84 3-24 (301)
445 3oes_A GTPase rhebl1; small GT 94.0 0.019 6.5E-07 54.1 2.2 24 63-86 25-48 (201)
446 2wsm_A Hydrogenase expression/ 94.0 0.021 7.1E-07 54.6 2.4 23 63-85 31-53 (221)
447 1x3s_A RAS-related protein RAB 94.0 0.022 7.6E-07 52.8 2.5 23 64-86 17-39 (195)
448 1zd9_A ADP-ribosylation factor 94.0 0.023 7.7E-07 53.0 2.5 22 64-85 24-45 (188)
449 2atv_A RERG, RAS-like estrogen 94.0 0.023 7.9E-07 53.2 2.6 22 64-85 30-51 (196)
450 1ak2_A Adenylate kinase isoenz 93.9 0.032 1.1E-06 54.4 3.6 26 60-85 14-39 (233)
451 2q3h_A RAS homolog gene family 93.9 0.029 9.9E-07 52.6 3.3 24 62-85 20-43 (201)
452 3dz8_A RAS-related protein RAB 93.9 0.02 6.9E-07 53.4 2.2 23 64-86 25-47 (191)
453 3tui_C Methionine import ATP-b 93.9 0.037 1.3E-06 58.2 4.4 74 125-198 144-220 (366)
454 3a8t_A Adenylate isopentenyltr 93.9 0.037 1.3E-06 57.6 4.3 26 61-86 39-64 (339)
455 3cph_A RAS-related protein SEC 93.9 0.023 7.9E-07 53.7 2.5 24 62-85 20-43 (213)
456 3reg_A RHO-like small GTPase; 93.9 0.023 8E-07 53.0 2.5 23 64-86 25-47 (194)
457 2bcg_Y Protein YP2, GTP-bindin 93.9 0.02 7E-07 54.0 2.2 22 64-85 10-31 (206)
458 1e4v_A Adenylate kinase; trans 93.9 0.027 9.2E-07 54.0 3.0 22 64-85 2-23 (214)
459 2aka_B Dynamin-1; fusion prote 93.9 0.023 8E-07 57.1 2.6 23 64-86 28-50 (299)
460 2p5s_A RAS and EF-hand domain 93.9 0.024 8.2E-07 53.3 2.6 24 63-86 29-52 (199)
461 3t5g_A GTP-binding protein RHE 93.9 0.026 9E-07 51.8 2.7 21 64-84 8-28 (181)
462 2j1l_A RHO-related GTP-binding 93.8 0.028 9.7E-07 53.7 2.9 22 64-85 36-57 (214)
463 2fu5_C RAS-related protein RAB 93.8 0.019 6.6E-07 52.8 1.7 22 64-85 10-31 (183)
464 2ew1_A RAS-related protein RAB 93.8 0.023 7.7E-07 54.1 2.2 22 64-85 28-49 (201)
465 3zvl_A Bifunctional polynucleo 93.8 0.032 1.1E-06 59.7 3.6 26 60-85 256-281 (416)
466 3lv8_A DTMP kinase, thymidylat 93.8 0.031 1.1E-06 55.2 3.2 26 61-86 26-51 (236)
467 2b6h_A ADP-ribosylation factor 93.8 0.027 9.2E-07 52.9 2.6 24 62-85 29-52 (192)
468 2iwr_A Centaurin gamma 1; ANK 93.7 0.02 6.9E-07 52.4 1.7 22 64-85 9-30 (178)
469 2fv8_A H6, RHO-related GTP-bin 93.7 0.024 8.3E-07 53.7 2.2 22 64-85 27-48 (207)
470 2p65_A Hypothetical protein PF 93.7 0.03 1E-06 51.4 2.7 27 60-86 41-67 (187)
471 3c5c_A RAS-like protein 12; GD 93.7 0.028 9.7E-07 52.4 2.6 22 64-85 23-44 (187)
472 3fvq_A Fe(3+) IONS import ATP- 93.6 0.037 1.3E-06 58.1 3.6 74 125-198 119-195 (359)
473 3llu_A RAS-related GTP-binding 93.6 0.031 1.1E-06 52.5 2.8 23 64-86 22-44 (196)
474 3tif_A Uncharacterized ABC tra 93.6 0.033 1.1E-06 54.8 3.1 74 125-198 125-202 (235)
475 4g1u_C Hemin import ATP-bindin 93.6 0.035 1.2E-06 55.7 3.3 74 125-198 122-204 (266)
476 2fh5_B SR-beta, signal recogni 93.6 0.028 9.7E-07 53.3 2.5 23 64-86 9-31 (214)
477 3def_A T7I23.11 protein; chlor 93.6 0.031 1.1E-06 55.6 2.9 23 64-86 38-60 (262)
478 3tmk_A Thymidylate kinase; pho 93.6 0.036 1.2E-06 53.9 3.2 28 60-87 3-30 (216)
479 3ld9_A DTMP kinase, thymidylat 93.6 0.043 1.5E-06 53.7 3.8 26 60-85 19-44 (223)
480 3exa_A TRNA delta(2)-isopenten 93.5 0.042 1.4E-06 56.6 3.8 24 62-85 3-26 (322)
481 3d3q_A TRNA delta(2)-isopenten 93.5 0.036 1.2E-06 57.7 3.4 24 63-86 8-31 (340)
482 1gwn_A RHO-related GTP-binding 93.5 0.026 9E-07 53.8 2.2 22 64-85 30-51 (205)
483 4tmk_A Protein (thymidylate ki 93.5 0.037 1.3E-06 53.7 3.2 26 61-86 2-27 (213)
484 2ocp_A DGK, deoxyguanosine kin 93.5 0.039 1.3E-06 54.0 3.4 26 61-86 1-26 (241)
485 1h65_A Chloroplast outer envel 93.5 0.033 1.1E-06 55.6 2.9 23 64-86 41-63 (270)
486 2g3y_A GTP-binding protein GEM 93.5 0.04 1.4E-06 53.2 3.3 22 64-85 39-60 (211)
487 1sky_E F1-ATPase, F1-ATP synth 93.4 0.044 1.5E-06 59.4 3.9 34 51-85 141-174 (473)
488 4djt_A GTP-binding nuclear pro 93.4 0.019 6.4E-07 54.8 0.9 22 64-85 13-34 (218)
489 2gco_A H9, RHO-related GTP-bin 93.4 0.029 1E-06 52.9 2.2 22 64-85 27-48 (201)
490 3rlf_A Maltose/maltodextrin im 93.4 0.043 1.5E-06 58.0 3.6 74 125-198 114-190 (381)
491 1p5z_B DCK, deoxycytidine kina 93.3 0.029 1E-06 55.7 2.2 28 59-86 21-48 (263)
492 2h92_A Cytidylate kinase; ross 93.3 0.038 1.3E-06 52.9 2.9 24 62-85 3-26 (219)
493 2x77_A ADP-ribosylation factor 93.3 0.027 9.1E-07 52.3 1.7 24 62-85 22-45 (189)
494 3b85_A Phosphate starvation-in 93.2 0.0064 2.2E-07 58.9 -2.7 39 148-189 108-146 (208)
495 2a5y_B CED-4; apoptosis; HET: 93.2 1.5 5E-05 48.3 15.9 23 62-84 152-174 (549)
496 2atx_A Small GTP binding prote 93.2 0.033 1.1E-06 51.9 2.2 22 64-85 20-41 (194)
497 3crm_A TRNA delta(2)-isopenten 93.2 0.048 1.6E-06 56.4 3.5 24 63-86 6-29 (323)
498 3sr0_A Adenylate kinase; phosp 93.1 0.048 1.7E-06 52.6 3.4 22 64-85 2-23 (206)
499 2yc2_C IFT27, small RAB-relate 93.1 0.02 6.7E-07 53.8 0.5 22 64-85 22-43 (208)
500 3cnl_A YLQF, putative uncharac 93.0 0.046 1.6E-06 54.7 3.1 25 63-87 100-124 (262)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4e-46 Score=394.52 Aligned_cols=222 Identities=26% Similarity=0.381 Sum_probs=183.1
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI--- 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~--- 103 (606)
..|+++||+++|..+ .+.+.+|+|||++|++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++...
T Consensus 23 ~mi~v~~ls~~y~~~----~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p-~~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 23 HMIKLSNITKVFHQG----TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSE 97 (366)
T ss_dssp CCEEEEEEEEEEECS----SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECSSCCH
T ss_pred ceEEEEeEEEEeCCC----CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC-CceEEEECCEECCcCCH
Confidence 359999999998532 1345799999999999999999999999999999999999887 59999999987532
Q ss_pred ---hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchh
Q psy13765 104 ---NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQ 179 (606)
Q Consensus 104 ---~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~ 179 (606)
...|+.+|||||++.+++.+||.+.+... +. ..+.+..+ ++|+.-+.+.+.-.+ ..|.++..|||||
T Consensus 98 ~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~-~~------~~~~~~~~~~~~v~~lL~~vgL~~--~~~~~~~~LSGGq 168 (366)
T 3tui_C 98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALP-LE------LDNTPKDEVKRRVTELLSLVGLGD--KHDSYPSNLSGGQ 168 (366)
T ss_dssp HHHHHHHTTEEEECSSCCCCTTSCHHHHHHHH-HH------HSCCCHHHHHHHHHHHHHHHTCGG--GTTCCTTTSCHHH
T ss_pred HHHHHHhCcEEEEeCCCccCCCCCHHHHHHHH-HH------hcCCCHHHHHHHHHHHHHHcCCch--HhcCChhhCCHHH
Confidence 23467899999999999999996655431 11 01123333 445554455544332 4688888899999
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
||||+|||||+.+|++|||||||||||+.++..++++|++++++ |+|||++|||++ .+.++|||+++|++|++++.|+
T Consensus 169 kQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~~g~ 247 (366)
T 3tui_C 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDT 247 (366)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEECCB
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999765 999999999986 5778999999999999999999
Q ss_pred hhHHH
Q psy13765 259 TDQLV 263 (606)
Q Consensus 259 ~~~~~ 263 (606)
++++.
T Consensus 248 ~~ev~ 252 (366)
T 3tui_C 248 VSEVF 252 (366)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=7e-46 Score=380.57 Aligned_cols=220 Identities=28% Similarity=0.396 Sum_probs=175.5
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--h-
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--I- 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~- 103 (606)
..|+++||+++|+ +.+.+|+|||++|++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++.. .
T Consensus 6 ~~l~i~~ls~~y~-------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p-~~G~I~~~G~~i~~~~~ 77 (275)
T 3gfo_A 6 YILKVEELNYNYS-------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP-SSGRILFDNKPIDYSRK 77 (275)
T ss_dssp EEEEEEEEEEECT-------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEECCCSHH
T ss_pred cEEEEEEEEEEEC-------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCeEEEECCEECCcccc
Confidence 3699999999973 234599999999999999999999999999999999999877 5999999998763 1
Q ss_pred --hhhcccEEEEccCCC-CCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchh
Q psy13765 104 --NAFRRVSCYIQQDDR-LQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQ 179 (606)
Q Consensus 104 --~~~~~~~~yv~Q~~~-l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~ 179 (606)
..+++.+|||+|++. .+..+||.+.+... +.. ..++..+ ++|+.-+.+.+.-. -+.|.++..|||||
T Consensus 78 ~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~-~~~------~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGq 148 (275)
T 3gfo_A 78 GIMKLRESIGIVFQDPDNQLFSASVYQDVSFG-AVN------MKLPEDEIRKRVDNALKRTGIE--HLKDKPTHCLSFGQ 148 (275)
T ss_dssp HHHHHHHSEEEECSSGGGTCCSSBHHHHHHHH-HHT------SCCCHHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHHH
T ss_pred cHHHHhCcEEEEEcCcccccccCcHHHHHHHH-HHH------cCCCHHHHHHHHHHHHHHcCCc--hhhcCCcccCCHHH
Confidence 345778999999973 34468886655431 100 1233333 34444333333221 15677788888888
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS-QQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
||||+||+||+.+|++|||||||+|||+.++..++++|++++ ++|+|||++||+++. +.++|||+++|++|++++.|+
T Consensus 149 kQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~drv~~l~~G~i~~~g~ 227 (275)
T 3gfo_A 149 KKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDNVFVMKEGRVILQGN 227 (275)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGGCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEECC
Confidence 888888888888899999999999999999999999999997 569999999999884 668999999999999999999
Q ss_pred hhHHHH
Q psy13765 259 TDQLVN 264 (606)
Q Consensus 259 ~~~~~~ 264 (606)
++++.+
T Consensus 228 ~~~~~~ 233 (275)
T 3gfo_A 228 PKEVFA 233 (275)
T ss_dssp HHHHTH
T ss_pred HHHHhc
Confidence 998754
No 3
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.2e-45 Score=376.49 Aligned_cols=218 Identities=23% Similarity=0.390 Sum_probs=180.9
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~----- 102 (606)
.|+++||+++| +++++|+|||+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++..
T Consensus 24 ~l~i~~l~~~y--------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~i~~~~~~ 94 (263)
T 2olj_A 24 MIDVHQLKKSF--------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF-DEGEIIIDGINLKAKDTN 94 (263)
T ss_dssp SEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEESSSTTCC
T ss_pred eEEEEeEEEEE--------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC-CCcEEEECCEECCCcccc
Confidence 49999999997 345799999999999999999999999999999999999877 5999999998753
Q ss_pred hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-ccCCCCCCCCchhh
Q psy13765 103 INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-FLDEPTTSNPNDQK 180 (606)
Q Consensus 103 ~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~ 180 (606)
...+++.+|||+|++.+++.+||.+.+...... . .+++..+ ++|+.-+.+.+ ++- .+|.+...||||||
T Consensus 95 ~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~-~-----~~~~~~~~~~~~~~~l~~~---~L~~~~~~~~~~LSgGqk 165 (263)
T 2olj_A 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMK-V-----RKWPREKAEAKAMELLDKV---GLKDKAHAYPDSLSGGQA 165 (263)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH-T-----SCCCHHHHHHHHHHHHHHT---TCGGGTTSCGGGSCHHHH
T ss_pred HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHH-H-----cCCCHHHHHHHHHHHHHHC---CCchHhcCChhhCCHHHH
Confidence 134567899999999999999997776541100 0 1123222 34443333333 332 57889999999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
|||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||++ .+.++||++++|++|++++.|+++
T Consensus 166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~ 244 (263)
T 2olj_A 166 QRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPE 244 (263)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999999878999999999976 567899999999999999999998
Q ss_pred HHHH
Q psy13765 261 QLVN 264 (606)
Q Consensus 261 ~~~~ 264 (606)
++.+
T Consensus 245 ~~~~ 248 (263)
T 2olj_A 245 DLFD 248 (263)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
No 4
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-45 Score=376.68 Aligned_cols=218 Identities=22% Similarity=0.347 Sum_probs=180.2
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---- 103 (606)
.|+++||+++| +++++|+|||+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++...
T Consensus 6 ~l~i~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~~~~~ 76 (262)
T 1b0u_A 6 KLHVIDLHKRY--------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-SEGAIIVNGQNINLVRDK 76 (262)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEECCEEECT
T ss_pred eEEEeeEEEEE--------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEccccccc
Confidence 48999999997 345799999999999999999999999999999999999877 59999999987641
Q ss_pred ------------hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCccc-c-c
Q psy13765 104 ------------NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVM-F-L 168 (606)
Q Consensus 104 ------------~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~-~-~ 168 (606)
..+++.+|||+|++.+++.+||.+.+...... . .+++..+ ++|+. +++..-++- . +
T Consensus 77 ~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~-~-----~~~~~~~~~~~~~---~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ-V-----LGLSKHDARERAL---KYLAKVGIDERAQ 147 (262)
T ss_dssp TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH-T-----TCCCHHHHHHHHH---HHHHHTTCCHHHH
T ss_pred cccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHH-h-----cCCCHHHHHHHHH---HHHHHcCCCchhh
Confidence 23467899999999999999997766541100 0 0123222 33443 333332332 4 6
Q ss_pred CCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee
Q psy13765 169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248 (606)
Q Consensus 169 de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 248 (606)
|.+...|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||++ .+.++||++++|
T Consensus 148 ~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l 226 (262)
T 1b0u_A 148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFL 226 (262)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 8889999999999999999999999999999999999999999999999999878999999999976 567899999999
Q ss_pred cCCcEEEEcChhHHHH
Q psy13765 249 SGGQCLYQGATDQLVN 264 (606)
Q Consensus 249 ~~G~~~~~G~~~~~~~ 264 (606)
++|+++..|+++++.+
T Consensus 227 ~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 227 HQGKIEEEGDPEQVFG 242 (262)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEeCCHHHHHh
Confidence 9999999999988754
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.1e-45 Score=390.79 Aligned_cols=218 Identities=22% Similarity=0.383 Sum_probs=181.6
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC----C-
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR----N- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~----~- 102 (606)
.|+++||+++| +++.+|+|||+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++. .
T Consensus 4 ~l~i~~ls~~y--------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-~~G~I~i~G~~i~~~~~~ 74 (359)
T 3fvq_A 4 ALHIGHLSKSF--------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP-DSGEISLSGKTIFSKNTN 74 (359)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC-SEEEEEETTEEEESSSCB
T ss_pred EEEEEeEEEEE--------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC-CCcEEEECCEECcccccc
Confidence 48999999997 446799999999999999999999999999999999999887 599999999865 1
Q ss_pred hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHHHHHHHHHhcCCcccccCCCCCCCCchhhh
Q psy13765 103 INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181 (606)
Q Consensus 103 ~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~k 181 (606)
....++.+|||+|++.++|.+||.+.+.. ++.. ...+. ..++|+.-+.+++.-.+ ++|.++..|||||||
T Consensus 75 ~~~~~r~ig~vfQ~~~l~p~ltV~eni~~-~l~~------~~~~~~~~~~~v~~~l~~~gL~~--~~~r~~~~LSGGq~Q 145 (359)
T 3fvq_A 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAY-GLGN------GKGRTAQERQRIEAMLELTGISE--LAGRYPHELSGGQQQ 145 (359)
T ss_dssp CCGGGSCCEEECTTCCCCTTSCHHHHHHT-TSTT------SSCCSHHHHHHHHHHHHHHTCGG--GTTSCGGGSCHHHHH
T ss_pred cchhhCCEEEEeCCCcCCCCCCHHHHHHH-HHHH------cCCChHHHHHHHHHHHHHcCCch--HhcCChhhCCHHHHH
Confidence 22346789999999999999999776643 3321 11222 23456655555554322 578888889999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
||+|||||+.+|++|||||||||||+..+.++.+.|+++.+ .|+|+|++|||.+ ++..+||||++|++|+++..|+++
T Consensus 146 RValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~ 224 (359)
T 3fvq_A 146 RAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASPH 224 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999998888754 6999999999976 577999999999999999999999
Q ss_pred HHHH
Q psy13765 261 QLVN 264 (606)
Q Consensus 261 ~~~~ 264 (606)
++.+
T Consensus 225 el~~ 228 (359)
T 3fvq_A 225 ELYR 228 (359)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9864
No 6
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.5e-45 Score=390.67 Aligned_cols=218 Identities=23% Similarity=0.384 Sum_probs=178.3
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAF 106 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~ 106 (606)
.|+++||+++| +++.+|+|||+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++... ...
T Consensus 3 ~l~~~~l~~~y--------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-~~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 3 SVQLQNVTKAW--------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-TSGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTCCGG
T ss_pred EEEEEeEEEEE--------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC-CCeEEEECCEECCCCCHH
Confidence 48999999997 346799999999999999999999999999999999999887 59999999987642 233
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I 185 (606)
++.+|||+|++.++|.+||.+.+.. ++. ....+..+ ++|+.-+.+++.-.+ ++|.++..|||||||||+|
T Consensus 74 ~r~ig~VfQ~~~l~p~ltV~eni~~-~~~------~~~~~~~~~~~~v~~~l~~~~L~~--~~~r~p~~LSGGqrQRVai 144 (381)
T 3rlf_A 74 ERGVGMVFQSYALYPHLSVAENMSF-GLK------LAGAKKEVINQRVNQVAEVLQLAH--LLDRKPKALSGGQRQRVAI 144 (381)
T ss_dssp GSCEEEECTTCCCCTTSCHHHHHTH-HHH------HTTCCHHHHHHHHHHHHHHTTCGG--GTTCCGGGSCHHHHHHHHH
T ss_pred HCCEEEEecCCcCCCCCCHHHHHHH-HHH------HcCCCHHHHHHHHHHHHHHcCCch--hhcCChhHCCHHHHHHHHH
Confidence 5779999999999999999665432 111 01123332 345554444443322 4677777777777777788
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
||||+.+|++|||||||||||+..+.++.+.|++++++ |+|+|++|||++ ++..+||||++|++|+++..|+++++.+
T Consensus 145 ArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 88888889999999999999999999999999999765 999999999976 5789999999999999999999999864
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.8e-45 Score=369.60 Aligned_cols=221 Identities=26% Similarity=0.421 Sum_probs=176.0
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA 105 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~ 105 (606)
|+++||+++|+.+ ...+.+|+|||+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++.. ..+
T Consensus 2 l~~~~l~~~y~~~----~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~~~~~~~~~ 76 (235)
T 3tif_A 2 VKLKNVTKTYKMG----EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-TEGEVYIDNIKTNDLDDDE 76 (235)
T ss_dssp EEEEEEEEEEEET----TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECTTCCHHH
T ss_pred EEEEEEEEEeCCC----CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CceEEEECCEEcccCCHHH
Confidence 7899999998532 1235699999999999999999999999999999999999887 5999999998653 222
Q ss_pred ---h-cccEEEEccCCCCCCCCcHHHHHHHc-CCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchh
Q psy13765 106 ---F-RRVSCYIQQDDRLQPLLTIENVMSLL-GLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQ 179 (606)
Q Consensus 106 ---~-~~~~~yv~Q~~~l~~~ltv~~~l~~~-gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~ 179 (606)
. ++.+|||+|++.+++.+||.+.+..- ... ..+..+..+ ++++.-+.+.+.-.+ ...|.++..|||||
T Consensus 77 ~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq 150 (235)
T 3tif_A 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK-----YRGAMSGEERRKRALECLKMAELEE-RFANHKPNQLSGGQ 150 (235)
T ss_dssp HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC-----SSSCCCHHHHHHHHHHHHHHTTCCG-GGTTCCGGGSCHHH
T ss_pred HHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhh-----hccCCCHHHHHHHHHHHHHHCCCCh-hhhhCChhhCCHHH
Confidence 2 34699999999999999997765431 111 011233333 334433333332211 24588999999999
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
||||+|||||+.+|++|||||||+|||+.++.++++.|++++++ |+|||++|||++ +.++||++++|++|+++..++
T Consensus 151 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~ 228 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEK 228 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999875 999999999986 348999999999999999998
Q ss_pred hhHH
Q psy13765 259 TDQL 262 (606)
Q Consensus 259 ~~~~ 262 (606)
++++
T Consensus 229 ~~~~ 232 (235)
T 3tif_A 229 LRGF 232 (235)
T ss_dssp CC--
T ss_pred hhhh
Confidence 8764
No 8
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.1e-45 Score=374.38 Aligned_cols=217 Identities=24% Similarity=0.414 Sum_probs=177.4
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~ 103 (606)
..|+++||+++| +++++|+|||+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++.. .
T Consensus 10 ~~l~~~~l~~~~--------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 10 ALLEASHLHYHV--------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP-SHGECHLLGQNLNSWQP 80 (266)
T ss_dssp CEEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC-SSCEEEETTEETTTSCH
T ss_pred ceEEEEeEEEEe--------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEECCcCCH
Confidence 469999999987 346799999999999999999999999999999999999877 5999999998753 3
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl 183 (606)
...++.++|++|++.+++.+||.+.+... .... . ..-.++++.-+.+.+.-.+ ..|.+...|||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~-~~~~-~------~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgGq~QRv 150 (266)
T 4g1u_C 81 KALARTRAVMRQYSELAFPFSVSEVIQMG-RAPY-G------GSQDRQALQQVMAQTDCLA--LAQRDYRVLSGGEQQRV 150 (266)
T ss_dssp HHHHHHEEEECSCCCCCSCCBHHHHHHGG-GTTS-C------STTHHHHHHHHHHHTTCST--TTTSBGGGCCHHHHHHH
T ss_pred HHHhheEEEEecCCccCCCCCHHHHHHhh-hhhc-C------cHHHHHHHHHHHHHcCChh--HhcCCcccCCHHHHHHH
Confidence 45667899999999998889997766542 1110 0 1112344443333332211 46777778888888888
Q ss_pred HHHHhhhc------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765 184 SIALELIN------NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256 (606)
Q Consensus 184 ~IA~aL~~------~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~ 256 (606)
+|||||+. +|++|+|||||+|||+.++.++++.|++++++ |+|||++|||++ .+.++|||+++|++|++++.
T Consensus 151 ~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i~~~ 229 (266)
T 4g1u_C 151 QLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKLVAC 229 (266)
T ss_dssp HHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEE
Confidence 88888888 89999999999999999999999999999875 579999999976 57789999999999999999
Q ss_pred cChhHHH
Q psy13765 257 GATDQLV 263 (606)
Q Consensus 257 G~~~~~~ 263 (606)
|+++++.
T Consensus 230 g~~~~~~ 236 (266)
T 4g1u_C 230 GTPEEVL 236 (266)
T ss_dssp ECHHHHC
T ss_pred cCHHHHh
Confidence 9998864
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.7e-45 Score=371.67 Aligned_cols=219 Identities=23% Similarity=0.365 Sum_probs=180.4
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC--hh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--IN 104 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--~~ 104 (606)
..|+++||+++| +++.+|+|||+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++.. ..
T Consensus 14 ~~l~i~~l~~~y--------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~~~~~~~ 84 (256)
T 1vpl_A 14 GAVVVKDLRKRI--------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP-SSGIVTVFGKNVVEEPH 84 (256)
T ss_dssp CCEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEETTTCHH
T ss_pred CeEEEEEEEEEE--------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCccHH
Confidence 458999999997 346799999999999999999999999999999999999877 5999999998753 23
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl 183 (606)
..++.+|||+|++.+++.+||.+.+.... .. .+.+..+ ++++.-+.+.+.-.+ .+|.+...|||||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~--~~-----~~~~~~~~~~~~~~~l~~~gL~~--~~~~~~~~LSgGq~qRv 155 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVA--GF-----YASSSSEIEEMVERATEIAGLGE--KIKDRVSTYSKGMVRKL 155 (256)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHH--HH-----HCCCHHHHHHHHHHHHHHHCCGG--GGGSBGGGCCHHHHHHH
T ss_pred HHhhcEEEEcCCCCCCCCCcHHHHHHHHH--HH-----cCCChHHHHHHHHHHHHHCCCch--HhcCChhhCCHHHHHHH
Confidence 45678999999999999999977765421 00 0122222 334433333332211 46788888999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
.||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+..+||++++|++|++++.|+++++.
T Consensus 156 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 156 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELK 234 (256)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999999999878999999999976 466789999999999999999998876
Q ss_pred H
Q psy13765 264 N 264 (606)
Q Consensus 264 ~ 264 (606)
+
T Consensus 235 ~ 235 (256)
T 1vpl_A 235 E 235 (256)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.9e-45 Score=363.86 Aligned_cols=210 Identities=21% Similarity=0.328 Sum_probs=171.6
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~ 104 (606)
.|+++||+++| +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++... .
T Consensus 4 ~l~~~~l~~~y--------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~ 74 (224)
T 2pcj_A 4 ILRAENIKKVI--------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP-TEGKVFLEGKEVDYTNEK 74 (224)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC-SEEEEEETTEECCSSCHH
T ss_pred EEEEEeEEEEE--------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCCCCHH
Confidence 48999999987 336799999999999999999999999999999999999877 59999999987532 1
Q ss_pred ---hhc-ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChH-HHHHHHHHHHHhcCCccc-ccCCCCCCCCch
Q psy13765 105 ---AFR-RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG-QKKRLSIALELINNPRVM-FLDEPTTSNPND 178 (606)
Q Consensus 105 ---~~~-~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgG-qrqRv~ia~~L~~~~~~~-~~de~~~~~s~g 178 (606)
.++ +.++||+|++.+++.+||.+.+... ... .+++.. .++++.-+.+.+ .+- .+|.+...||||
T Consensus 75 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~-~~~------~~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~LSgG 144 (224)
T 2pcj_A 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVP-MLK------MGKPKKEAKERGEYLLSEL---GLGDKLSRKPYELSGG 144 (224)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHH-HHH------TTCCHHHHHHHHHHHHHHT---TCTTCTTCCGGGSCHH
T ss_pred HHHHHHhCcEEEEecCcccCCCCCHHHHHHhH-HHH------cCCCHHHHHHHHHHHHHHc---CCchhhhCChhhCCHH
Confidence 233 6799999999999999997766531 110 012211 233443333332 222 468888899999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
|||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||++ .+ ++||++++|++|++++.|+
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 145 EQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEee
Confidence 999999999999999999999999999999999999999999877999999999975 35 8999999999999999886
No 11
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7e-45 Score=366.43 Aligned_cols=217 Identities=22% Similarity=0.392 Sum_probs=178.1
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---h
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---N 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~ 104 (606)
.|+++||+++| +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++... .
T Consensus 6 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~ 76 (240)
T 1ji0_A 6 VLEVQSLHVYY--------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA-QKGKIIFNGQDITNKPAH 76 (240)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECTTCCHH
T ss_pred eEEEEeEEEEE--------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCCHH
Confidence 59999999997 335799999999999999999999999999999999999877 59999999987532 2
Q ss_pred h-hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcc-cccCCCCCCCCchhhhH
Q psy13765 105 A-FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQKKR 182 (606)
Q Consensus 105 ~-~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~-~~~de~~~~~s~g~~kr 182 (606)
. .++.+|||+|++.+++.+|+.+.+....... .. ....++++.-..+.+. .+ -..|++...||||||||
T Consensus 77 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~--~~~~~~~~~~~l~~~~--~l~~~~~~~~~~LSgGq~qr 147 (240)
T 1ji0_A 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNR-----KD--KEGIKRDLEWIFSLFP--RLKERLKQLGGTLSGGEQQM 147 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC-----CC--SSHHHHHHHHHHHHCH--HHHTTTTSBSSSSCHHHHHH
T ss_pred HHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC-----CC--HHHHHHHHHHHHHHcc--cHhhHhcCChhhCCHHHHHH
Confidence 2 2456999999999999999988776521111 00 1112333332222221 12 14688999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 183 l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
|+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.++||++++|++|++++.|+++++
T Consensus 148 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 226 (240)
T 1ji0_A 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999999878999999999976 46789999999999999999998876
Q ss_pred H
Q psy13765 263 V 263 (606)
Q Consensus 263 ~ 263 (606)
.
T Consensus 227 ~ 227 (240)
T 1ji0_A 227 L 227 (240)
T ss_dssp H
T ss_pred h
Confidence 4
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-44 Score=381.71 Aligned_cols=218 Identities=22% Similarity=0.340 Sum_probs=179.8
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAF 106 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~ 106 (606)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++... ...
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 3 SIRVVNLKKYF--------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP-TSGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCGG
T ss_pred EEEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC-CccEEEECCEECCCCChh
Confidence 38999999997 346799999999999999999999999999999999999877 59999999987532 233
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I 185 (606)
++.+|||+|+..++|.+||.+.+.. ++.. .+.+..+ ++|+.-+.+.+.-.+ ++|.+...|||||||||+|
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~-~~~~------~~~~~~~~~~~v~~~l~~~~L~~--~~~r~~~~LSgGq~QRval 144 (359)
T 2yyz_A 74 YREVGMVFQNYALYPHMTVFENIAF-PLRA------RRISKDEVEKRVVEIARKLLIDN--LLDRKPTQLSGGQQQRVAL 144 (359)
T ss_dssp GTTEEEECSSCCCCTTSCHHHHHHG-GGSS------SCSHHHHTTHHHHHHHHHTTCGG--GTTSCGGGSCHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHH-HHHh------cCCCHHHHHHHHHHHHHHcCCch--HhcCChhhCCHHHHHHHHH
Confidence 5789999999999999999777654 2211 1122222 345544444443222 4678888888888888899
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
||||+.+|++|+|||||+|||+.++.++.+.|++++++ |.|+|++|||++ ++..+|||+++|++|+++..|+++++.+
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 145 ARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999765 999999999976 5778999999999999999999998864
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.4e-44 Score=367.89 Aligned_cols=221 Identities=16% Similarity=0.278 Sum_probs=179.7
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---- 103 (606)
.|+++||+++| +++++|+|||+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++...
T Consensus 7 ~l~i~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 7 ILRTENIVKYF--------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA-DEGRVYFENKDITNKEPA 77 (257)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECTTCCHH
T ss_pred EEEEeeeEEEE--------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHH
Confidence 59999999997 345799999999999999999999999999999999999877 59999999987532
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCc------cccCC-hHHHHHHHHHHHHhcCCccc-ccCCCCCCC
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTR------SSQLS-GGQKKRLSIALELINNPRVM-FLDEPTTSN 175 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~------~~~lS-gGqrqRv~ia~~L~~~~~~~-~~de~~~~~ 175 (606)
...++.++||+|++.+++.+||.+.+.........+.. ....+ .-.++++.-+.+.+ .+- ..|++...|
T Consensus 78 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~L 154 (257)
T 1g6h_A 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL---KLSHLYDRKAGEL 154 (257)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHT---TCGGGTTSBGGGS
T ss_pred HHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHc---CCchhhCCCchhC
Confidence 23456799999999999999998877542111000000 00012 12244444333333 332 578899999
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
||||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||++. +.++||++++|++|++++
T Consensus 155 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST-TGGGCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999998889999999999874 668999999999999999
Q ss_pred EcChhH
Q psy13765 256 QGATDQ 261 (606)
Q Consensus 256 ~G~~~~ 261 (606)
.|++++
T Consensus 234 ~g~~~~ 239 (257)
T 1g6h_A 234 EGRGEE 239 (257)
T ss_dssp EEESHH
T ss_pred EeCHHH
Confidence 999988
No 14
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.9e-44 Score=380.12 Aligned_cols=221 Identities=19% Similarity=0.367 Sum_probs=181.7
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-h
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-N 104 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~ 104 (606)
...|+++||+++|+ +++++|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++... .
T Consensus 12 ~~~l~~~~l~~~y~-------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~ 83 (355)
T 1z47_A 12 SMTIEFVGVEKIYP-------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP-TKGDVWIGGKRVTDLP 83 (355)
T ss_dssp CEEEEEEEEEECCT-------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTCC
T ss_pred CceEEEEEEEEEEc-------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEECCEECCcCC
Confidence 45799999999862 345799999999999999999999999999999999999877 59999999987632 3
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl 183 (606)
..++.+|||+|+..++|.+||.+.+.. ++.. .+++..+ ++|+.-+.+.+.-.+ ++|.+...|||||||||
T Consensus 84 ~~~r~ig~v~Q~~~l~~~ltv~eni~~-~l~~------~~~~~~~~~~~v~~~l~~~gL~~--~~~r~~~~LSGGq~QRv 154 (355)
T 1z47_A 84 PQKRNVGLVFQNYALFQHMTVYDNVSF-GLRE------KRVPKDEMDARVRELLRFMRLES--YANRFPHELSGGQQQRV 154 (355)
T ss_dssp GGGSSEEEECGGGCCCTTSCHHHHHHH-HHHH------TTCCHHHHHHHHHHHHHHTTCGG--GTTSCGGGSCHHHHHHH
T ss_pred hhhCcEEEEecCcccCCCCCHHHHHHH-HHHH------cCCCHHHHHHHHHHHHHHcCChh--HhcCCcccCCHHHHHHH
Confidence 346789999999999999999766543 2110 1123333 445554444443222 46788888888888888
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
+|||||+.+|++|+|||||+|||+.++.++.+.|++++++ |+|+|++|||++ ++..+|||+++|++|+++..|+++++
T Consensus 155 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l 233 (355)
T 1z47_A 155 ALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEEV 233 (355)
T ss_dssp HHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 8999999999999999999999999999999999999765 999999999976 57789999999999999999999988
Q ss_pred HH
Q psy13765 263 VN 264 (606)
Q Consensus 263 ~~ 264 (606)
.+
T Consensus 234 ~~ 235 (355)
T 1z47_A 234 YE 235 (355)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 15
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.5e-44 Score=381.72 Aligned_cols=218 Identities=23% Similarity=0.377 Sum_probs=180.4
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAF 106 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~ 106 (606)
.|+++||+++| +++++|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++... ...
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 3 EIKLENIVKKF--------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP-TSGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CEEEEEEEEES--------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCGG
T ss_pred EEEEEeEEEEE--------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-CceEEEECCEECCcCCHh
Confidence 38999999986 346799999999999999999999999999999999999887 59999999987532 233
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I 185 (606)
++.+|||+|+..++|.+||.+.+.. ++. ..+.+..+ ++|+.-+.+++.-.+ ++|.+...|||||||||+|
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~-~~~------~~~~~~~~~~~~v~~~l~~~~L~~--~~~r~~~~LSGGq~QRval 144 (362)
T 2it1_A 74 DRNVGLVFQNWALYPHMTVYKNIAF-PLE------LRKAPREEIDKKVREVAKMLHIDK--LLNRYPWQLSGGQQQRVAI 144 (362)
T ss_dssp GTTEEEECTTCCCCTTSCHHHHHHH-HHH------HTTCCHHHHHHHHHHHHHHTTCTT--CTTCCGGGSCHHHHHHHHH
T ss_pred HCcEEEEecCcccCCCCCHHHHHHH-HHH------hcCCCHHHHHHHHHHHHHHcCCch--HhhCChhhCCHHHHHHHHH
Confidence 5789999999999999999766543 111 01123333 455554444443322 4678888889999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
||||+.+|++|+|||||||||+.++.++.+.|++++++ |+|+|++|||++ ++..+|||+++|++|+++..|+++++.+
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 145 ARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999765 999999999976 5778999999999999999999998854
No 16
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.7e-44 Score=382.18 Aligned_cols=218 Identities=20% Similarity=0.348 Sum_probs=179.9
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---- 103 (606)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++...
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 3 GVRLVDVWKVF--------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-SRGQIYIGDKLVADPEKG 73 (372)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-SEEEEEETTEEEEEGGGT
T ss_pred EEEEEeEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC-CccEEEECCEECcccccc
Confidence 48999999997 346799999999999999999999999999999999999887 59999999976421
Q ss_pred ---hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchh
Q psy13765 104 ---NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQ 179 (606)
Q Consensus 104 ---~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~ 179 (606)
...++.+|||+|+..++|.+||.+.+.. ++. ..+++..+ ++|+.-+.+.+.-.+ ++|.+...|||||
T Consensus 74 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~-~~~------~~~~~~~~~~~~v~~~l~~~~L~~--~~~r~~~~LSGGq 144 (372)
T 1g29_1 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAF-PLK------LRKVPRQEIDQRVREVAELLGLTE--LLNRKPRELSGGQ 144 (372)
T ss_dssp EECCGGGSSEEEECSCCCCCTTSCHHHHHHH-HHH------HTTCCHHHHHHHHHHHHHHHTCGG--GTTCCGGGSCHHH
T ss_pred ccCCHhHCCEEEEeCCCccCCCCCHHHHHHH-HHH------HcCCCHHHHHHHHHHHHHHCCCch--HhcCCcccCCHHH
Confidence 2235779999999999999999776643 111 01123333 355554444443322 4678888888888
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
||||+|||||+.+|++|+|||||+|||+.++.++.+.|++++++ |.|+|++|||+. ++..+||++++|++|+++..|+
T Consensus 145 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~ 223 (372)
T 1g29_1 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGS 223 (372)
T ss_dssp HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEEeCC
Confidence 88888999999999999999999999999999999999999765 999999999976 5778999999999999999999
Q ss_pred hhHHHH
Q psy13765 259 TDQLVN 264 (606)
Q Consensus 259 ~~~~~~ 264 (606)
++++.+
T Consensus 224 ~~~l~~ 229 (372)
T 1g29_1 224 PDEVYD 229 (372)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998864
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2e-44 Score=381.92 Aligned_cols=218 Identities=23% Similarity=0.400 Sum_probs=181.8
Q ss_pred EEEEEeeEEEEecCCcccccccc--cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKD--VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--- 102 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--- 102 (606)
.|+++||+++| ++++ +|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++..
T Consensus 3 ~l~i~~l~~~y--------~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~ 73 (353)
T 1oxx_K 3 RIIVKNVSKVF--------KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-STGELYFDDRLVASNG 73 (353)
T ss_dssp CEEEEEEEEEE--------GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC-SEEEEEETTEEEEETT
T ss_pred EEEEEeEEEEE--------CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECcccc
Confidence 38999999997 3356 99999999999999999999999999999999999877 5999999998642
Q ss_pred ---hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCch
Q psy13765 103 ---INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPND 178 (606)
Q Consensus 103 ---~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g 178 (606)
....++.+|||+|+..+++.+||.+.+.. ++.. .+++..+ ++|+.-+.+.+.-.+ ++|.+...||||
T Consensus 74 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~-~~~~------~~~~~~~~~~~v~~~l~~~~L~~--~~~~~~~~LSGG 144 (353)
T 1oxx_K 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAF-PLTN------MKMSKEEIRKRVEEVAKILDIHH--VLNHFPRELSGA 144 (353)
T ss_dssp EESSCGGGSCEEEEETTSCCCTTSCHHHHHHG-GGTT------SSCCHHHHHHHHHHHHHHTTCGG--GTTSCGGGSCHH
T ss_pred cccCChhhCCEEEEeCCCccCCCCCHHHHHHH-HHHH------cCCCHHHHHHHHHHHHHHcCCch--HhcCChhhCCHH
Confidence 23346789999999999999999777654 2211 1233333 445554444443222 568888899999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||+|||||+.+|++|+|||||+|||+.++.++.+.|++++++ |+|+|++|||++ ++..+|||+++|++|+++..|
T Consensus 145 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g 223 (353)
T 1oxx_K 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVG 223 (353)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999765 999999999976 577899999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++.+
T Consensus 224 ~~~~l~~ 230 (353)
T 1oxx_K 224 KPEDLYD 230 (353)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9998854
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4.4e-44 Score=381.15 Aligned_cols=218 Identities=22% Similarity=0.352 Sum_probs=178.0
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAF 106 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~ 106 (606)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++... ...
T Consensus 11 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 11 EVKLENLTKRF--------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-TEGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCGG
T ss_pred eEEEEEEEEEE--------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CceEEEECCEECCCCChh
Confidence 39999999997 346799999999999999999999999999999999999887 59999999987532 233
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I 185 (606)
++.+|||+|+..++|.+||.+.+.. ++.. .+.+..+ ++|+.-+.+.+.-.+ ++|.+...|||||||||+|
T Consensus 82 ~r~ig~v~Q~~~l~~~ltv~eni~~-~~~~------~~~~~~~~~~~v~~~l~~~~L~~--~~~r~~~~LSGGq~QRval 152 (372)
T 1v43_A 82 DRNISMVFQSYAVWPHMTVYENIAF-PLKI------KKFPKDEIDKRVRWAAELLQIEE--LLNRYPAQLSGGQRQRVAV 152 (372)
T ss_dssp GGTEEEEEC------CCCHHHHHHT-TCC--------CCCHHHHHHHHHHHHHHTTCGG--GTTSCTTTCCSSCHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHH-HHHh------cCCCHHHHHHHHHHHHHHcCChh--HhcCChhhCCHHHHHHHHH
Confidence 5789999999999999999877754 3321 1233333 455654555443222 5788999999999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
||||+.+|++|+|||||||||+..+.++.+.|++++++ |.|+|++|||+. ++..+|||+++|++|+++..|+++++.+
T Consensus 153 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 153 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999765 999999999976 5778999999999999999999998864
No 19
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=8.1e-44 Score=364.00 Aligned_cols=222 Identities=20% Similarity=0.343 Sum_probs=179.5
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR 107 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~ 107 (606)
.|+++||+++|..+ ....+++|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++.....++
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~~~~~~ 77 (266)
T 2yz2_A 2 RIEVVNVSHIFHRG---TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP-TSGDVLYDGERKKGYEIR 77 (266)
T ss_dssp CEEEEEEEEEESTT---STTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECCHHHHG
T ss_pred EEEEEEEEEEecCC---CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEECCEECchHHhh
Confidence 48899999998310 00015799999999999999999999999999999999999876 599999999876533567
Q ss_pred ccEEEEccCC-CCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHHHHHHHHHhcCC--cccccCCCCCCCCchhhhHH
Q psy13765 108 RVSCYIQQDD-RLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNP--RVMFLDEPTTSNPNDQKKRL 183 (606)
Q Consensus 108 ~~~~yv~Q~~-~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqRv~ia~~L~~~~--~~~~~de~~~~~s~g~~krl 183 (606)
+.+|||+|++ ..++.+|+.+.+... .... ++. ..++|+.-+.+.+.-. + .+|.+...|||||||||
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~enl~~~-~~~~-------~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~~~LSgGq~qRv 147 (266)
T 2yz2_A 78 RNIGIAFQYPEDQFFAERVFDEVAFA-VKNF-------YPDRDPVPLVKKAMEFVGLDFDS--FKDRVPFFLSGGEKRRV 147 (266)
T ss_dssp GGEEEECSSGGGGCCCSSHHHHHHHT-TTTT-------CTTSCSHHHHHHHHHHTTCCHHH--HTTCCGGGSCHHHHHHH
T ss_pred hhEEEEeccchhhcCCCcHHHHHHHH-HHhc-------CCHHHHHHHHHHHHHHcCcCCcc--cccCChhhCCHHHHHHH
Confidence 7899999995 456678998777642 2110 111 1134554444444322 2 35788899999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 184 ~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++. +..+||++++|++|++++.|+++++.
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~-~~~~~d~v~~l~~G~i~~~g~~~~~~ 226 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTRMEFL 226 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT-TGGGCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998779999999999874 66789999999999999999998876
Q ss_pred H
Q psy13765 264 N 264 (606)
Q Consensus 264 ~ 264 (606)
+
T Consensus 227 ~ 227 (266)
T 2yz2_A 227 E 227 (266)
T ss_dssp H
T ss_pred c
Confidence 5
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.3e-44 Score=377.62 Aligned_cols=213 Identities=21% Similarity=0.425 Sum_probs=175.2
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR 107 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~ 107 (606)
|+++||+++| +++ +|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++... ...+
T Consensus 2 l~~~~l~~~y--------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~~~g~~i~~~~~~~ 71 (348)
T 3d31_A 2 IEIESLSRKW--------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-DSGRILLDGKDVTDLSPEK 71 (348)
T ss_dssp EEEEEEEEEC--------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC-SEEEEEETTEECTTSCHHH
T ss_pred EEEEEEEEEE--------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC-CCcEEEECCEECCCCchhh
Confidence 7899999986 335 99999999999999999999999999999999999877 59999999987642 3346
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL 187 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~ 187 (606)
+.+|||+|+..++|.+||.+.+.. ++... + .+.. +|+.-+.+.+.-.+ ++|.+...|||||||||+|||
T Consensus 72 r~ig~v~Q~~~l~~~ltv~enl~~-~~~~~-~-----~~~~--~~v~~~l~~~~L~~--~~~~~~~~LSgGq~QRvalAr 140 (348)
T 3d31_A 72 HDIAFVYQNYSLFPHMNVKKNLEF-GMRMK-K-----IKDP--KRVLDTARDLKIEH--LLDRNPLTLSGGEQQRVALAR 140 (348)
T ss_dssp HTCEEECTTCCCCTTSCHHHHHHH-HHHHH-C-----CCCH--HHHHHHHHHTTCTT--TTTSCGGGSCHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHH-HHHHc-C-----CCHH--HHHHHHHHHcCCch--HhcCChhhCCHHHHHHHHHHH
Confidence 789999999999999999766543 21110 0 1111 44443444433221 467778888888888888999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
||+.+|++|+|||||+|||+.++.++.+.|++++++ |+|+|++|||+. ++.++|||+++|++|+++..|+++++.
T Consensus 141 aL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 141 ALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999764 999999999976 577899999999999999999999875
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.4e-44 Score=359.82 Aligned_cols=212 Identities=21% Similarity=0.352 Sum_probs=175.7
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-hhhc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-NAFR 107 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-~~~~ 107 (606)
|+++||+++|. + +|+|+|+++++ |+++|+||||||||||+|+|+|+.+| .+|+|.++|++... ...+
T Consensus 2 l~~~~l~~~y~--------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~ 69 (240)
T 2onk_A 2 FLKVRAEKRLG--------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP-DRGEVRLNGADITPLPPER 69 (240)
T ss_dssp CEEEEEEEEET--------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCTTT
T ss_pred EEEEEEEEEeC--------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCchhh
Confidence 68999999872 2 49999999999 99999999999999999999999877 59999999987532 3346
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLSIA 186 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~IA 186 (606)
+.+|||+|++.+++.+|+.+.+.. +... .+.+ ..++|+. +++..-.+- ..|.+...||||||||++||
T Consensus 70 ~~i~~v~q~~~l~~~ltv~enl~~-~~~~------~~~~-~~~~~~~---~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA 138 (240)
T 2onk_A 70 RGIGFVPQDYALFPHLSVYRNIAY-GLRN------VERV-ERDRRVR---EMAEKLGIAHLLDRKPARLSGGERQRVALA 138 (240)
T ss_dssp SCCBCCCSSCCCCTTSCHHHHHHT-TCTT------SCHH-HHHHHHH---HHHHTTTCTTTTTCCGGGSCHHHHHHHHHH
T ss_pred CcEEEEcCCCccCCCCcHHHHHHH-HHHH------cCCc-hHHHHHH---HHHHHcCCHHHhcCChhhCCHHHHHHHHHH
Confidence 779999999999999999887754 2211 0011 1234443 333333332 57888999999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHH
Q psy13765 187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++|||++ .+.++||++++|++|++++.|+++++.+
T Consensus 139 ral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 139 RALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999764 999999999976 4678999999999999999999988754
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.6e-44 Score=368.02 Aligned_cols=222 Identities=22% Similarity=0.334 Sum_probs=177.3
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--- 102 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--- 102 (606)
...|+++||+++| +++++|+|||+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++..
T Consensus 19 ~~~l~~~~l~~~y--------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~~~~~~ 89 (279)
T 2ihy_A 19 HMLIQLDQIGRMK--------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA-TSGTVNLFGKMPGKVG 89 (279)
T ss_dssp CEEEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTBCCC---
T ss_pred CceEEEEeEEEEE--------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCeEEEECCEEccccc
Confidence 4569999999997 335799999999999999999999999999999999999877 5999999998654
Q ss_pred --hhhhcccEEEEccCCCCC--CCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCc
Q psy13765 103 --INAFRRVSCYIQQDDRLQ--PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPN 177 (606)
Q Consensus 103 --~~~~~~~~~yv~Q~~~l~--~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~ 177 (606)
...+++.+|||+|++.+. +.+||.+.+.. +...... ..+..+...++|+.-+.+.+ .+- .+|.+...|||
T Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~---gl~~~~~~~~~~LSg 164 (279)
T 2ihy_A 90 YSAETVRQHIGFVSHSLLEKFQEGERVIDVVIS-GAFKSIG-VYQDIDDEIRNEAHQLLKLV---GMSAKAQQYIGYLST 164 (279)
T ss_dssp CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHT-TC----------CCHHHHHHHHHHHHHT---TCGGGTTSBGGGSCH
T ss_pred CCHHHHcCcEEEEEcCcccccCCCCCHHHHHHh-hhhhccc-cccCCcHHHHHHHHHHHHHc---CChhHhcCChhhCCH
Confidence 244577899999997643 35699887753 2211000 00011222334443333333 232 56888999999
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTI--ICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~ti--i~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++|||++ .+.++||++++|++|++++
T Consensus 165 GqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~i~~ 243 (279)
T 2ihy_A 165 GEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQSIQ 243 (279)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998779999 99999987 4668999999999999999
Q ss_pred EcChhHH
Q psy13765 256 QGATDQL 262 (606)
Q Consensus 256 ~G~~~~~ 262 (606)
.|+++++
T Consensus 244 ~g~~~~~ 250 (279)
T 2ihy_A 244 QGAVEDI 250 (279)
T ss_dssp EEEHHHH
T ss_pred ECCHHHH
Confidence 9998876
No 23
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=7.2e-43 Score=353.20 Aligned_cols=215 Identities=27% Similarity=0.446 Sum_probs=174.0
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--- 102 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--- 102 (606)
...++++||+++|+ .+++.+|+|||++|++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++..
T Consensus 5 ~~~~~~~~l~~~y~------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~I~i~g~~~~~~~ 77 (247)
T 2ff7_A 5 HHDITFRNIRFRYK------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALAD 77 (247)
T ss_dssp CEEEEEEEEEEESS------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEETTTSC
T ss_pred cCceeEEEEEEEeC------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEhhhCC
Confidence 35799999999862 1235799999999999999999999999999999999999877 5999999998753
Q ss_pred hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHH------HhcC-C-cc-cccCCCCC
Q psy13765 103 INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE------LINN-P-RV-MFLDEPTT 173 (606)
Q Consensus 103 ~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~------L~~~-~-~~-~~~de~~~ 173 (606)
...+++.++||+|++.+++ .|+.+.+.. +.. ..+ ++++.-+.+ ++.. | .+ -.++++..
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~-~tv~enl~~-~~~--------~~~---~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~ 144 (247)
T 2ff7_A 78 PNWLRRQVGVVLQDNVLLN-RSIIDNISL-ANP--------GMS---VEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 144 (247)
T ss_dssp HHHHHHHEEEECSSCCCTT-SBHHHHHTT-TCT--------TCC---HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTT
T ss_pred HHHHHhcEEEEeCCCcccc-ccHHHHHhc-cCC--------CCC---HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCC
Confidence 3446778999999999887 599877653 211 011 122221111 1222 1 11 14577888
Q ss_pred CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++. + +.||++++|++|++
T Consensus 145 ~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~G~i 221 (247)
T 2ff7_A 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEKGKI 221 (247)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999995 59999999999874 4 56999999999999
Q ss_pred EEEcChhHHH
Q psy13765 254 LYQGATDQLV 263 (606)
Q Consensus 254 ~~~G~~~~~~ 263 (606)
++.|+++++.
T Consensus 222 ~~~g~~~~l~ 231 (247)
T 2ff7_A 222 VEQGKHKELL 231 (247)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998874
No 24
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5.2e-43 Score=358.90 Aligned_cols=219 Identities=22% Similarity=0.334 Sum_probs=174.1
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~ 104 (606)
.|+++||++.|+.+ +++.+|+|||++|++||+++|+||||||||||||+|+|+.+| .+|+|.++|++.. ..
T Consensus 16 ~l~~~~l~~~y~~~-----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~i~~~~~~ 89 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH-----PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP-TGGKVLLDGEPLVQYDHH 89 (271)
T ss_dssp CEEEEEEEECCTTC-----TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEEGGGBCHH
T ss_pred eEEEEEEEEEeCCC-----CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCCEEEECCEEcccCCHH
Confidence 59999999986310 125799999999999999999999999999999999999877 5999999998653 34
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCCh-HHHHH-HHH--HHHHhcC-C-cc-cccCCCCCCCCc
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKR-LSI--ALELINN-P-RV-MFLDEPTTSNPN 177 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSg-GqrqR-v~i--a~~L~~~-~-~~-~~~de~~~~~s~ 177 (606)
.+++.++||+|++.+++ .||.+.+.. +... .+. .+..+ ... +.+++.. | .+ -.+|++...|||
T Consensus 90 ~~~~~i~~v~Q~~~l~~-~tv~enl~~-~~~~--------~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSg 159 (271)
T 2ixe_A 90 YLHTQVAAVGQEPLLFG-RSFRENIAY-GLTR--------TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSG 159 (271)
T ss_dssp HHHHHEEEECSSCCCCS-SBHHHHHHT-TCSS--------CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCH
T ss_pred HHhccEEEEecCCcccc-ccHHHHHhh-hccc--------CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCH
Confidence 45678999999999887 499887754 3211 111 11111 100 1122211 1 12 146888899999
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~ 256 (606)
||||||.|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||+++. + ..||++++|++|+++..
T Consensus 160 Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~-~~~d~v~~l~~G~i~~~ 237 (271)
T 2ixe_A 160 GQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-A-ERAHHILFLKEGSVCEQ 237 (271)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-H-TTCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999865 48999999999763 4 46999999999999999
Q ss_pred cChhHHHH
Q psy13765 257 GATDQLVN 264 (606)
Q Consensus 257 G~~~~~~~ 264 (606)
|+++++.+
T Consensus 238 g~~~~l~~ 245 (271)
T 2ixe_A 238 GTHLQLME 245 (271)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 99988764
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=6.3e-43 Score=363.42 Aligned_cols=217 Identities=23% Similarity=0.358 Sum_probs=174.4
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~ 103 (606)
..|+++||+|+|+ +.+.+|+|||++|++||++||+||||||||||+|+|+|++++ .+|+|.+||.+.. .
T Consensus 52 ~~i~~~~vs~~y~-------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p-~~G~I~i~G~~i~~~~~ 123 (306)
T 3nh6_A 52 GRIEFENVHFSYA-------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI-SSGCIRIDGQDISQVTQ 123 (306)
T ss_dssp CCEEEEEEEEESS-------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC-SEEEEEETTEETTSBCH
T ss_pred CeEEEEEEEEEcC-------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC-CCcEEEECCEEcccCCH
Confidence 3699999999973 235799999999999999999999999999999999999887 5999999998753 4
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHH----HHHHHHHhcCCc-c-cccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKR----LSIALELINNPR-V-MFLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqR----v~ia~~L~~~~~-~-~~~de~~~~~s~ 177 (606)
..+|+.+|||+|++.+++. ||.+.+.. +... .+..+..+ +.+...+...|+ + -..++....|||
T Consensus 124 ~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~-~~~~--------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSG 193 (306)
T 3nh6_A 124 ASLRSHIGVVPQDTVLFND-TIADNIRY-GRVT--------AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSG 193 (306)
T ss_dssp HHHHHTEEEECSSCCCCSE-EHHHHHHT-TSTT--------CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCH
T ss_pred HHHhcceEEEecCCccCcc-cHHHHHHh-hccc--------CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCH
Confidence 5678899999999999864 88766643 3211 11111111 111111222221 1 145777888999
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
||||||+|||||+.+|+||||||||||||+.++..+.+.|+++.+ ++|+|+++|+++. + ..||+|++|++|++++.|
T Consensus 194 GqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~aD~i~vl~~G~iv~~G 270 (306)
T 3nh6_A 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-V-VNADQILVIKDGCIVERG 270 (306)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-H-HTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-H-HcCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999865 7999999999874 5 459999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++.+
T Consensus 271 ~~~el~~ 277 (306)
T 3nh6_A 271 RHEALLS 277 (306)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9999875
No 26
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6.3e-43 Score=353.89 Aligned_cols=207 Identities=23% Similarity=0.363 Sum_probs=173.0
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~ 104 (606)
.|+++||+++ ++|+|+|+++++||+++|+||||||||||||+|+|+.++ . |+|.++|++.. ..
T Consensus 4 ~l~~~~l~~~------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p-~-G~i~~~g~~~~~~~~~ 69 (249)
T 2qi9_C 4 VMQLQDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-K-GSIQFAGQPLEAWSAT 69 (249)
T ss_dssp EEEEEEEEET------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-E-EEEEETTEEGGGSCHH
T ss_pred EEEEEceEEE------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-C-eEEEECCEECCcCCHH
Confidence 5899999863 589999999999999999999999999999999999876 5 99999998642 34
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~ 184 (606)
.+++.++||+|++.+++.+|+.+.+... ... . .+ ++++.-+.+.+.-.+ .+|.+...||||||||+.
T Consensus 70 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~-~~~--~-----~~---~~~~~~~l~~~~l~~--~~~~~~~~LSgGq~qrv~ 136 (249)
T 2qi9_C 70 KLALHRAYLSQQQTPPFATPVWHYLTLH-QHD--K-----TR---TELLNDVAGALALDD--KLGRSTNQLSGGEWQRVR 136 (249)
T ss_dssp HHHHHEEEECSCCCCCTTCBHHHHHHTT-CSS--T-----TC---HHHHHHHHHHTTCGG--GTTSBGGGCCHHHHHHHH
T ss_pred HHhceEEEECCCCccCCCCcHHHHHHHh-hcc--C-----Cc---HHHHHHHHHHcCChh--HhcCChhhCCHHHHHHHH
Confidence 5667899999999999999998877642 110 0 11 444443333332211 467888889999999999
Q ss_pred HHHhhhcCCc-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 185 IALELINNPR-------VMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 185 IA~aL~~~P~-------lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
||+||+.+|+ +|+|||||+|||+.++..+.+.|++++++|+|||++|||++ .+.++||++++|++|++++.|
T Consensus 137 lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g 215 (249)
T 2qi9_C 137 LAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASG 215 (249)
T ss_dssp HHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 9999999999 99999999999999999999999999877999999999976 466899999999999999999
Q ss_pred ChhHH
Q psy13765 258 ATDQL 262 (606)
Q Consensus 258 ~~~~~ 262 (606)
+++++
T Consensus 216 ~~~~~ 220 (249)
T 2qi9_C 216 RREEV 220 (249)
T ss_dssp EHHHH
T ss_pred CHHHH
Confidence 98876
No 27
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4.1e-43 Score=355.64 Aligned_cols=219 Identities=24% Similarity=0.316 Sum_probs=168.9
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC--CCCCCccEEEECCccCCh--
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--RSNGVTGQILTNGHSRNI-- 103 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~--~~~~~~G~I~~~G~~~~~-- 103 (606)
.|+++||+++| +++.+|+|||+++++||+++|+||||||||||+|+|+|+ .++ .+|+|.++|++...
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p-~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 3 QLEIRDLWASI--------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-ERGEILLDGENILELS 73 (250)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE-EEEEEEETTEECTTSC
T ss_pred eEEEEeEEEEE--------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CceEEEECCEECCCCC
Confidence 48999999997 336799999999999999999999999999999999998 444 58999999987532
Q ss_pred -hhh-cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCC-CCchh
Q psy13765 104 -NAF-RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTS-NPNDQ 179 (606)
Q Consensus 104 -~~~-~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~-~s~g~ 179 (606)
... ++.++||+|++.+++.+|+.+.+... .....+. ..+..+ ++++.-+.+.+.-. --+.|.+... |||||
T Consensus 74 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~-~~~~~~~---~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~~~LSgGq 148 (250)
T 2d2e_A 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLA-LQAKLGR---EVGVAEFWTKVKKALELLDWD-ESYLSRYLNEGFSGGE 148 (250)
T ss_dssp HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHH-HHHHHTS---CCCHHHHHHHHHHHHHHHTCC-GGGGGSBTTCC----H
T ss_pred HHHHHhCcEEEeccCCccccCCCHHHHHHHH-HHhhccc---cCCHHHHHHHHHHHHHHcCCC-hhHhcCCcccCCCHHH
Confidence 222 34589999999999999998876531 1100010 011112 33443333333211 0246888888 99999
Q ss_pred hhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cceeeeecCCcEEEEcC
Q psy13765 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM-FDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 180 ~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~~~~~G~ 258 (606)
||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||++. +..+ ||++++|++|++++.|+
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTSCCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCCEEEEEECCEEEEEeC
Confidence 999999999999999999999999999999999999999997779999999999874 5566 59999999999999999
Q ss_pred hhH
Q psy13765 259 TDQ 261 (606)
Q Consensus 259 ~~~ 261 (606)
++.
T Consensus 228 ~~~ 230 (250)
T 2d2e_A 228 PEL 230 (250)
T ss_dssp HHH
T ss_pred HHH
Confidence 873
No 28
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.9e-42 Score=349.92 Aligned_cols=211 Identities=21% Similarity=0.315 Sum_probs=172.4
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR 107 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~ 107 (606)
.|+++||+++|. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|. .+
T Consensus 4 ~l~i~~l~~~y~-------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~I~----------~~ 65 (253)
T 2nq2_C 4 ALSVENLGFYYQ-------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP-IQGKIE----------VY 65 (253)
T ss_dssp EEEEEEEEEEET-------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC-SEEEEE----------EC
T ss_pred eEEEeeEEEEeC-------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEE----------Ee
Confidence 489999999972 146799999999999999999999999999999999999877 599998 34
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL 187 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~ 187 (606)
+.++||+|++.+++.+||.+.+... ....... .+..+...++++.-+.+.+.-.+ .+|.+...|||||||||+||+
T Consensus 66 ~~i~~v~q~~~~~~~~tv~enl~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgGq~qrv~lAr 141 (253)
T 2nq2_C 66 QSIGFVPQFFSSPFAYSVLDIVLMG-RSTHINT-FAKPKSHDYQVAMQALDYLNLTH--LAKREFTSLSGGQRQLILIAR 141 (253)
T ss_dssp SCEEEECSCCCCSSCCBHHHHHHGG-GGGGSCT-TCCCCHHHHHHHHHHHHHTTCGG--GTTSBGGGSCHHHHHHHHHHH
T ss_pred ccEEEEcCCCccCCCCCHHHHHHHh-hhhhccc-ccCCCHHHHHHHHHHHHHcCChH--HhcCChhhCCHHHHHHHHHHH
Confidence 6799999999999999998877542 1110000 00012223455544444433221 568889999999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++|||++ .+.++||++++|++|+ ++.|+++++
T Consensus 142 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 142 AIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 999999999999999999999999999999999876 999999999976 4668999999999999 999998876
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.7e-42 Score=354.41 Aligned_cols=231 Identities=22% Similarity=0.239 Sum_probs=177.9
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCccEEEECCccCC---
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-NGVTGQILTNGHSRN--- 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~-~~~~G~I~~~G~~~~--- 102 (606)
..|+++||+++| +++++|+|||++|++||+++|+||||||||||+|+|+|+.. ++.+|+|.++|++..
T Consensus 19 ~~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 19 HMLSIKDLHVSV--------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS 90 (267)
T ss_dssp -CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSC
T ss_pred ceEEEEeEEEEE--------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCC
Confidence 359999999987 34679999999999999999999999999999999999842 225899999998653
Q ss_pred hhhh-cccEEEEccCCCCCCCCcHHHHHHHcCCccccC-CccccCChHH-HHHHHHHHHHhcCCcc--cccCCCCC-CCC
Q psy13765 103 INAF-RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN-TRSSQLSGGQ-KKRLSIALELINNPRV--MFLDEPTT-SNP 176 (606)
Q Consensus 103 ~~~~-~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~-~~~~~lSgGq-rqRv~ia~~L~~~~~~--~~~de~~~-~~s 176 (606)
.... ++.++||+|++.+++.+|+.+.+... ...... ......+..+ ++|+. +++..-.+ -+.|.+.. .||
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~gl~~~~~~~~~~~~LS 166 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA-LNAVRSYRGQETLDRFDFQDLME---EKIALLKMPEDLLTRSVNVGFS 166 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHHH-HHHHHHGGGCCCCCHHHHHHHHH---HHHHHTTCCTTTTTSBTTTTCC
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHHH-HHhhhhhhccccCCHHHHHHHHH---HHHHHcCCChhHhcCCcccCCC
Confidence 2222 34599999999999999997766431 100000 0001122222 33443 33332233 24677776 599
Q ss_pred chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cceeeeecCCcEEE
Q psy13765 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM-FDQVYLLSGGQCLY 255 (606)
Q Consensus 177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~~~~ 255 (606)
|||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||+.. +..+ ||++++|++|++++
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999997779999999999864 5455 89999999999999
Q ss_pred EcChhHHHHHHHhCCC
Q psy13765 256 QGATDQLVNYLSSVNL 271 (606)
Q Consensus 256 ~G~~~~~~~~f~~~g~ 271 (606)
.|+++++.. ++..++
T Consensus 246 ~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 246 SGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp EECTTHHHH-HHTTTC
T ss_pred EcCHHHHhh-hhhcch
Confidence 999988754 344444
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-42 Score=350.64 Aligned_cols=213 Identities=27% Similarity=0.474 Sum_probs=171.4
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhh
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INA 105 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~ 105 (606)
|+++||+++|+ +++++|+|||+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|++.. ...
T Consensus 2 l~~~~l~~~y~-------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 2 LSARHVDFAYD-------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP-TAGEITIDGQPIDNISLEN 73 (243)
T ss_dssp EEEEEEEECSS-------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC-SBSCEEETTEESTTTSCSC
T ss_pred EEEEEEEEEeC-------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEhhhCCHHH
Confidence 78999999862 235799999999999999999999999999999999999877 5999999998653 234
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc---------ccCCCCCCCC
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM---------FLDEPTTSNP 176 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~---------~~de~~~~~s 176 (606)
+++.++||+|++.+++. |+.+.+.. ++.. ..+ ++++.-+.+.+.-.+.+ .++++...||
T Consensus 74 ~~~~i~~v~q~~~l~~~-tv~enl~~-~~~~-------~~~---~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LS 141 (243)
T 1mv5_A 74 WRSQIGFVSQDSAIMAG-TIRENLTY-GLEG-------DYT---DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKIS 141 (243)
T ss_dssp CTTTCCEECCSSCCCCE-EHHHHTTS-CTTS-------CSC---HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCC
T ss_pred HHhhEEEEcCCCccccc-cHHHHHhh-hccC-------CCC---HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCC
Confidence 56789999999998874 88776542 2111 111 22333222322221111 2356778999
Q ss_pred chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEE
Q psy13765 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256 (606)
Q Consensus 177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~ 256 (606)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++ .+ +.||++++|++|+++..
T Consensus 142 gGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~ 218 (243)
T 1mv5_A 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGS 218 (243)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999997 6999999999976 34 56999999999999999
Q ss_pred cChhHHHH
Q psy13765 257 GATDQLVN 264 (606)
Q Consensus 257 G~~~~~~~ 264 (606)
|+++++.+
T Consensus 219 g~~~~~~~ 226 (243)
T 1mv5_A 219 GKHNELVA 226 (243)
T ss_dssp SCHHHHHH
T ss_pred CCHHHHHh
Confidence 99988754
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.1e-41 Score=347.00 Aligned_cols=215 Identities=23% Similarity=0.381 Sum_probs=171.7
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~ 103 (606)
..|+++||+++|+.+ ..+.+|+|||+++++||+++|+||||||||||+|+|+|+.++ +|+|.++|++.. .
T Consensus 16 ~~l~i~~l~~~y~~~-----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~G~I~i~g~~i~~~~~ 88 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQ-----TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA--EGDIKIGGKNVNKYNR 88 (260)
T ss_dssp CCEEEEEEEECCTTC-----CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--EEEEEETTEEGGGBCH
T ss_pred CeEEEEEEEEEeCCC-----CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CeEEEECCEEhhhcCH
Confidence 459999999987321 125699999999999999999999999999999999999863 899999998653 3
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHh-------cCCccc--ccCCCCCC
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELI-------NNPRVM--FLDEPTTS 174 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~-------~~~~~~--~~de~~~~ 174 (606)
..+++.++||+|++.+++ .|+.+.+.. +... .+ ++++.-+.+.+ .-|+-+ .++++...
T Consensus 89 ~~~~~~i~~v~Q~~~l~~-~tv~enl~~-~~~~--------~~---~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~ 155 (260)
T 2ghi_A 89 NSIRSIIGIVPQDTILFN-ETIKYNILY-GKLD--------AT---DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMK 155 (260)
T ss_dssp HHHHTTEEEECSSCCCCS-EEHHHHHHT-TCTT--------CC---HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBC
T ss_pred HHHhccEEEEcCCCcccc-cCHHHHHhc-cCCC--------CC---HHHHHHHHHHhCCHHHHHhccccccccccCCcCc
Confidence 456778999999999886 599777754 2210 11 12221111111 112111 24567889
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ |+|||++||+++. + +.||++++|++|+++
T Consensus 156 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~i~ 232 (260)
T 2ghi_A 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNKGKIV 232 (260)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999965 8999999999874 4 569999999999999
Q ss_pred EEcChhHHHH
Q psy13765 255 YQGATDQLVN 264 (606)
Q Consensus 255 ~~G~~~~~~~ 264 (606)
..|+++++..
T Consensus 233 ~~g~~~~l~~ 242 (260)
T 2ghi_A 233 EKGTHKDLLK 242 (260)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHh
Confidence 9999988754
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=8.1e-42 Score=338.09 Aligned_cols=204 Identities=17% Similarity=0.305 Sum_probs=164.5
Q ss_pred CceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChh
Q psy13765 25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN 104 (606)
Q Consensus 25 ~~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~ 104 (606)
.+-.|+++||+++| ++ ++|+|+|+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++..
T Consensus 7 ~~~~l~~~~ls~~y--------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~~~-- 74 (214)
T 1sgw_A 7 HGSKLEIRDLSVGY--------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP-LKGEIIYNGVPIT-- 74 (214)
T ss_dssp --CEEEEEEEEEES--------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEEGG--
T ss_pred CCceEEEEEEEEEe--------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEhh--
Confidence 34579999999985 33 799999999999999999999999999999999999877 5999999998764
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~ 184 (606)
..++.++||+|++.+++.+|+.+.+... .. ... +. .+++++.-+.+.+.-.+ . +++...||||||||++
T Consensus 75 ~~~~~i~~v~q~~~~~~~~tv~enl~~~-~~-~~~-----~~-~~~~~~~~~l~~~gl~~--~-~~~~~~LSgGqkqrv~ 143 (214)
T 1sgw_A 75 KVKGKIFFLPEEIIVPRKISVEDYLKAV-AS-LYG-----VK-VNKNEIMDALESVEVLD--L-KKKLGELSQGTIRRVQ 143 (214)
T ss_dssp GGGGGEEEECSSCCCCTTSBHHHHHHHH-HH-HTT-----CC-CCHHHHHHHHHHTTCCC--T-TSBGGGSCHHHHHHHH
T ss_pred hhcCcEEEEeCCCcCCCCCCHHHHHHHH-HH-hcC-----Cc-hHHHHHHHHHHHcCCCc--C-CCChhhCCHHHHHHHH
Confidence 3577899999999999999997776542 10 000 00 11345543444443222 2 7888899999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++.. +..++|++++++ |++
T Consensus 144 laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~~-~~~ 210 (214)
T 1sgw_A 144 LASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKYS-TKI 210 (214)
T ss_dssp HHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGGB-C--
T ss_pred HHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEeC-Ccc
Confidence 9999999999999999999999999999999999998779999999999874 668889988764 443
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.3e-41 Score=345.02 Aligned_cols=211 Identities=20% Similarity=0.257 Sum_probs=162.2
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~ 108 (606)
|+++||+++|+.+ ...+.+|+|+|++++ ||+++|+||||||||||||+|+|+. | .+|+|.++|++......++
T Consensus 2 l~~~~l~~~y~~~----~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p-~~G~I~~~g~~~~~~~~~~ 74 (263)
T 2pjz_A 2 IQLKNVGITLSGK----GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P-YSGNIFINGMEVRKIRNYI 74 (263)
T ss_dssp EEEEEEEEEEEEE----TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C-CEEEEEETTEEGGGCSCCT
T ss_pred EEEEEEEEEeCCC----CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C-CCcEEEECCEECcchHHhh
Confidence 7899999997420 012579999999999 9999999999999999999999998 6 5999999997653211266
Q ss_pred cEE-EEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH
Q psy13765 109 VSC-YIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL 187 (606)
Q Consensus 109 ~~~-yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~ 187 (606)
.++ ||+|++.+ .+|+.+.+.... . .. .. .++++.-+.+.+.-. --.+|.+...||||||||+.||+
T Consensus 75 ~i~~~v~Q~~~l--~~tv~enl~~~~-~-~~-----~~---~~~~~~~~l~~~gl~-~~~~~~~~~~LSgGqkqRv~lAr 141 (263)
T 2pjz_A 75 RYSTNLPEAYEI--GVTVNDIVYLYE-E-LK-----GL---DRDLFLEMLKALKLG-EEILRRKLYKLSAGQSVLVRTSL 141 (263)
T ss_dssp TEEECCGGGSCT--TSBHHHHHHHHH-H-HT-----CC---CHHHHHHHHHHTTCC-GGGGGSBGGGSCHHHHHHHHHHH
T ss_pred heEEEeCCCCcc--CCcHHHHHHHhh-h-hc-----ch---HHHHHHHHHHHcCCC-hhHhcCChhhCCHHHHHHHHHHH
Confidence 799 99999987 788866554321 0 00 00 123332222222111 01356677777777777777888
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc-eeeeecCCcEEEEcChhHHH
Q psy13765 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD-QVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D-~v~~L~~G~~~~~G~~~~~~ 263 (606)
||+.+|++|+|||||+|||+.++..+.+.|+++++ |||++|||+. .+.++|| ++++|++|++++.|+++++.
T Consensus 142 aL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 142 ALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp HHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 88888999999999999999999999999998754 9999999986 4668999 99999999999999998875
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-41 Score=361.19 Aligned_cols=211 Identities=18% Similarity=0.250 Sum_probs=164.1
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~ 103 (606)
..|+++||+++|+ .+++.+|+|||++|++||+++|+||||||||||||+|+|+.+ .+|+|.++|++.. .
T Consensus 18 ~~i~~~~l~~~y~------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~G~~i~~~~~ 89 (390)
T 3gd7_A 18 GQMTVKDLTAKYT------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITL 89 (390)
T ss_dssp CCEEEEEEEEESS------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEESSCBTTSSCH
T ss_pred CeEEEEEEEEEec------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEECCEECCcCCh
Confidence 4699999999973 234679999999999999999999999999999999999976 4899999998753 3
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCC----------
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT---------- 173 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~---------- 173 (606)
..+++.+|||+|++.+++ .||.+.+...+ ..+ ++++.-+.+.+.-.+ ++|....
T Consensus 90 ~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~----------~~~---~~~v~~~l~~~~L~~--~~~~~p~~l~~~i~~~g 153 (390)
T 3gd7_A 90 EQWRKAFGVIPQKVFIFS-GTFRKNLDPNA----------AHS---DQEIWKVADEVGLRS--VIEQFPGKLDFVLVDGG 153 (390)
T ss_dssp HHHHHTEEEESCCCCCCS-EEHHHHHCTTC----------CSC---HHHHHHHHHHTTCHH--HHTTSTTGGGCEECTTT
T ss_pred HHHhCCEEEEcCCcccCc-cCHHHHhhhcc----------ccC---HHHHHHHHHHhCCHH--HHhhccccccccccccc
Confidence 456788999999999998 58765542110 011 222222222221110 2233333
Q ss_pred -CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 174 -SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 174 -~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
.|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. +|+|+|+++||.+ . ...|||+++|++|+
T Consensus 154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e-~-~~~aDri~vl~~G~ 230 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE-A-MLECDQFLVIEENK 230 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG-G-GTTCSEEEEEETTE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH-H-HHhCCEEEEEECCE
Confidence 377777777777888888899999999999999999999999999864 4899999999975 3 46799999999999
Q ss_pred EEEEcChhHHHH
Q psy13765 253 CLYQGATDQLVN 264 (606)
Q Consensus 253 ~~~~G~~~~~~~ 264 (606)
++..|+++++.+
T Consensus 231 i~~~g~~~el~~ 242 (390)
T 3gd7_A 231 VRQYDSILELYH 242 (390)
T ss_dssp EEEESSHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999999864
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.1e-40 Score=333.51 Aligned_cols=205 Identities=21% Similarity=0.319 Sum_probs=163.2
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR 107 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~ 107 (606)
.|+++||+++|+ .+++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|
T Consensus 6 ~l~~~~l~~~y~------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g--------- 69 (229)
T 2pze_A 6 EVVMENVTAFWE------EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSG--------- 69 (229)
T ss_dssp EEEEEEEEECSS------TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEECS---------
T ss_pred eEEEEEEEEEeC------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-CccEEEECC---------
Confidence 589999999863 1346799999999999999999999999999999999999877 599999998
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCcc--cccCCCCCCCCchhhh
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRV--MFLDEPTTSNPNDQKK 181 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~--~~~de~~~~~s~g~~k 181 (606)
.++||+|++.+++. |+.+.+.. +.. ......+.+ .+...+-..|.. -..+++...|||||||
T Consensus 70 -~i~~v~q~~~~~~~-tv~enl~~-~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkq 137 (229)
T 2pze_A 70 -RISFCSQFSWIMPG-TIKENIIF-GVS---------YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA 137 (229)
T ss_dssp -CEEEECSSCCCCSB-CHHHHHHT-TSC---------CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHH
T ss_pred -EEEEEecCCcccCC-CHHHHhhc-cCC---------cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHH
Confidence 38999999999886 99877753 221 011111111 111111111111 1346677899999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChh
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL-LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~-l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~ 260 (606)
|+.|||||+.+|++|+|||||+|||+.++..+++. +++++ +|+|||++||+++ .+ ..||++++|++|++++.|+++
T Consensus 138 rv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~ 214 (229)
T 2pze_A 138 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFS 214 (229)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999997 45554 4899999999976 34 469999999999999999998
Q ss_pred HHH
Q psy13765 261 QLV 263 (606)
Q Consensus 261 ~~~ 263 (606)
++.
T Consensus 215 ~~~ 217 (229)
T 2pze_A 215 ELQ 217 (229)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.9e-40 Score=333.53 Aligned_cols=206 Identities=23% Similarity=0.357 Sum_probs=164.9
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR 107 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~ 107 (606)
.|+++||+++|. .+++++|+|+|++|++||+++|+||||||||||+|+|+|+.+| .+|+|.++|
T Consensus 3 ~l~~~~l~~~y~------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g--------- 66 (237)
T 2cbz_A 3 SITVRNATFTWA------RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-VEGHVAIKG--------- 66 (237)
T ss_dssp CEEEEEEEEESC------TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE-EEEEEEECS---------
T ss_pred eEEEEEEEEEeC------CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECC---------
Confidence 389999999863 1246799999999999999999999999999999999999876 599999998
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHh---cC-Cc--ccccCCCCCCCCchhhh
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELI---NN-PR--VMFLDEPTTSNPNDQKK 181 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~---~~-~~--~~~~de~~~~~s~g~~k 181 (606)
.++||+|++.+ +.+|+.+.+.. +.. .+..+.+++.-+..+. .. |. -..++++...|||||||
T Consensus 67 -~i~~v~Q~~~~-~~~tv~enl~~-~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkq 134 (237)
T 2cbz_A 67 -SVAYVPQQAWI-QNDSLRENILF-GCQ---------LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ 134 (237)
T ss_dssp -CEEEECSSCCC-CSEEHHHHHHT-TSC---------CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHH
T ss_pred -EEEEEcCCCcC-CCcCHHHHhhC-ccc---------cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHH
Confidence 38999999875 57799777754 211 1112223322221111 11 11 01357888999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK---MISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~---~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
|++|||||+.+|++|+|||||+|||+.++..+++.|+ +++ +|+|||++||+++. + ..||++++|++|+++..|+
T Consensus 135 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~ 211 (237)
T 2cbz_A 135 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISEMGS 211 (237)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEEeCC
Confidence 9999999999999999999999999999999999995 443 48999999999874 4 5799999999999999999
Q ss_pred hhHHHH
Q psy13765 259 TDQLVN 264 (606)
Q Consensus 259 ~~~~~~ 264 (606)
++++.+
T Consensus 212 ~~~~~~ 217 (237)
T 2cbz_A 212 YQELLA 217 (237)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 988754
No 37
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.6e-40 Score=369.59 Aligned_cols=218 Identities=20% Similarity=0.316 Sum_probs=175.1
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
-.|+++|++++|+. +++++|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.+||++. +.
T Consensus 340 ~~i~~~~v~~~y~~------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~-~~G~i~i~g~~i~~~~~ 412 (587)
T 3qf4_A 340 GSVSFENVEFRYFE------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP-ERGRVEVDELDVRTVKL 412 (587)
T ss_dssp CCEEEEEEEECSSS------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC-SEEEEEESSSBGGGBCH
T ss_pred CcEEEEEEEEEcCC------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-CCcEEEECCEEcccCCH
Confidence 36999999998742 346799999999999999999999999999999999999887 599999999865 34
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH----HHHHHhcCCcc--cccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS----IALELINNPRV--MFLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~----ia~~L~~~~~~--~~~de~~~~~s~ 177 (606)
..+|+.++||+|++.+++. |+.|.+.. +... .+..+..+.. +...+..-|+= -..+|....|||
T Consensus 413 ~~~r~~i~~v~Q~~~lf~~-tv~eni~~-~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg 482 (587)
T 3qf4_A 413 KDLRGHISAVPQETVLFSG-TIKENLKW-GRED--------ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482 (587)
T ss_dssp HHHHHHEEEECSSCCCCSE-EHHHHHTT-TCSS--------CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH
T ss_pred HHHHhheEEECCCCcCcCc-cHHHHHhc-cCCC--------CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH
Confidence 5678899999999999876 88766532 2111 1111211111 11111122211 145778888999
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + +.|||+++|++|++++.|
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~-~~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT-A-LLADKILVLHEGKVAGFG 559 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH-H-TTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH-H-HhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999985 58999999999864 4 689999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++|+.+
T Consensus 560 ~~~el~~ 566 (587)
T 3qf4_A 560 THKELLE 566 (587)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9999875
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.2e-39 Score=367.53 Aligned_cols=218 Identities=26% Similarity=0.387 Sum_probs=173.6
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
..|+++|++++|+. +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.+||++. +.
T Consensus 338 ~~i~~~~v~~~y~~------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-~~G~i~~~g~~~~~~~~ 410 (578)
T 4a82_A 338 GRIDIDHVSFQYND------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV-TSGQILIDGHNIKDFLT 410 (578)
T ss_dssp CCEEEEEEEECSCS------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC-SEEEEEETTEEGGGSCH
T ss_pred CeEEEEEEEEEcCC------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC-CCcEEEECCEEhhhCCH
Confidence 46999999998742 346799999999999999999999999999999999999887 599999999864 34
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH----HHHHHhcCCcc--cccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS----IALELINNPRV--MFLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~----ia~~L~~~~~~--~~~de~~~~~s~ 177 (606)
..+|+.++||+|++.+++. |+.|.+.. |... .+..+..+.. +...+..-|+= -..+|....|||
T Consensus 411 ~~~r~~i~~v~Q~~~l~~~-tv~eni~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSg 480 (578)
T 4a82_A 411 GSLRNQIGLVQQDNILFSD-TVKENILL-GRPT--------ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG 480 (578)
T ss_dssp HHHHHTEEEECSSCCCCSS-BHHHHHGG-GCSS--------CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCH
T ss_pred HHHhhheEEEeCCCccCcc-cHHHHHhc-CCCC--------CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCH
Confidence 5678899999999999986 88766543 2111 1111111111 11111122221 144666778999
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||++|||||+++|++|+|||||||||+.++..+.+.++++. +|+|+|+++|+++. + +.||++++|++|++++.|
T Consensus 481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENGHIVETG 557 (578)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999885 47999999999875 4 679999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++|+.+
T Consensus 558 ~~~el~~ 564 (578)
T 4a82_A 558 THRELIA 564 (578)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9999865
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.6e-39 Score=366.88 Aligned_cols=215 Identities=22% Similarity=0.411 Sum_probs=175.4
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---IN 104 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~ 104 (606)
.|+++||+++|+. +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.+||++.. ..
T Consensus 341 ~i~~~~v~~~y~~------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p-~~G~i~~~g~~~~~~~~~ 413 (582)
T 3b60_A 341 DLEFRNVTFTYPG------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI-DEGHILMDGHDLREYTLA 413 (582)
T ss_dssp CEEEEEEEECSSS------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC-SEEEEEETTEETTTBCHH
T ss_pred cEEEEEEEEEcCC------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC-CCCeEEECCEEccccCHH
Confidence 5999999998731 125799999999999999999999999999999999999877 5999999998753 35
Q ss_pred hhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHH-------hcCCc-c-cccCCCCCCC
Q psy13765 105 AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL-------INNPR-V-MFLDEPTTSN 175 (606)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L-------~~~~~-~-~~~de~~~~~ 175 (606)
.+|+.++||+|++.+++. |+.|.+.. +... +.+. +++.-+.+. -..|+ + -..+|....|
T Consensus 414 ~~~~~i~~v~Q~~~l~~~-tv~eni~~-~~~~-------~~~~---~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~L 481 (582)
T 3b60_A 414 SLRNQVALVSQNVHLFND-TVANNIAY-ARTE-------EYSR---EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 481 (582)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHHT-TTTS-------CCCH---HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSS
T ss_pred HHHhhCeEEccCCcCCCC-CHHHHHhc-cCCC-------CCCH---HHHHHHHHHcCCHHHHHhccccccccccCCCCCC
Confidence 677889999999999885 99777654 2210 1121 222211111 11121 1 1457788899
Q ss_pred CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 176 s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
|||||||++|||||+++|++|+|||||||||+.++..+.+.|+++++ |+|+|+++|+++. + +.||++++|++|++++
T Consensus 482 SgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~ 558 (582)
T 3b60_A 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDGIIVE 558 (582)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999975 9999999999874 4 6799999999999999
Q ss_pred EcChhHHHH
Q psy13765 256 QGATDQLVN 264 (606)
Q Consensus 256 ~G~~~~~~~ 264 (606)
.|+++++.+
T Consensus 559 ~g~~~~l~~ 567 (582)
T 3b60_A 559 RGTHSELLA 567 (582)
T ss_dssp EECHHHHHH
T ss_pred ecCHHHHHH
Confidence 999998865
No 40
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.1e-39 Score=368.08 Aligned_cols=216 Identities=25% Similarity=0.428 Sum_probs=174.6
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
-.|+++||+++|+. +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.+||++. +.
T Consensus 340 ~~i~~~~v~~~y~~------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-~~G~i~~~g~~~~~~~~ 412 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV-DSGSICLDGHDVRDYKL 412 (582)
T ss_pred CeEEEEEEEEEcCC------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCCEEEECCEEhhhCCH
Confidence 36999999999842 225799999999999999999999999999999999999877 599999999865 34
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHH------h-cCCc-c-cccCCCCCC
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL------I-NNPR-V-MFLDEPTTS 174 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L------~-~~~~-~-~~~de~~~~ 174 (606)
..+|+.++||+|++.+++. |+.|.+.. +... +.+. +++.-+.+. + ..|+ + -..+|....
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~-~~~~-------~~~~---~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~ 480 (582)
T 3b5x_A 413 TNLRRHFALVSQNVHLFND-TIANNIAY-AAEG-------EYTR---EQIEQAARQAHAMEFIENMPQGLDTVIGENGTS 480 (582)
T ss_pred HHHhcCeEEEcCCCccccc-cHHHHHhc-cCCC-------CCCH---HHHHHHHHHCCCHHHHHhCcccccchhcCCCCc
Confidence 5678899999999999875 88776653 2200 1121 222211111 1 1121 1 134677789
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++++ |+|+|+++|+++. + +.||++++|++|+++
T Consensus 481 LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~ 557 (582)
T 3b5x_A 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST-I-EQADEILVVDEGEII 557 (582)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH-H-HhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 9999999999863 4 579999999999999
Q ss_pred EEcChhHHHH
Q psy13765 255 YQGATDQLVN 264 (606)
Q Consensus 255 ~~G~~~~~~~ 264 (606)
+.|+++++.+
T Consensus 558 ~~g~~~~l~~ 567 (582)
T 3b5x_A 558 ERGRHADLLA 567 (582)
T ss_pred EECCHHHHHh
Confidence 9999998864
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-39 Score=368.68 Aligned_cols=217 Identities=23% Similarity=0.385 Sum_probs=170.0
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
-.|+++||+++|+ +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.+||++. +.
T Consensus 353 ~~i~~~~v~~~y~-------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-~~G~i~~~g~~i~~~~~ 424 (598)
T 3qf4_B 353 GEIEFKNVWFSYD-------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV-DRGQILVDGIDIRKIKR 424 (598)
T ss_dssp CCEEEEEEECCSS-------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC-SEEEEEETTEEGGGSCH
T ss_pred CeEEEEEEEEECC-------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC-CCeEEEECCEEhhhCCH
Confidence 3699999999873 235799999999999999999999999999999999999887 599999999864 34
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH----HHHHHhcCCcc--cccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS----IALELINNPRV--MFLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~----ia~~L~~~~~~--~~~de~~~~~s~ 177 (606)
..+|+.++||+|++.+++. |+.+.+.. |.... +..+.+++. +...+-..|+= -..+|....|||
T Consensus 425 ~~~r~~i~~v~Q~~~lf~~-tv~eni~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg 494 (598)
T 3qf4_B 425 SSLRSSIGIVLQDTILFST-TVKENLKY-GNPGA--------TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQ 494 (598)
T ss_dssp HHHHHHEEEECTTCCCCSS-BHHHHHHS-SSTTC--------CTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCH
T ss_pred HHHHhceEEEeCCCccccc-cHHHHHhc-CCCCC--------CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCH
Confidence 5678899999999999875 88766543 21111 111111110 00001111110 123344467888
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + +.||++++|++|++++.|
T Consensus 495 Gq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g 571 (598)
T 3qf4_B 495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRDGEIVEMG 571 (598)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECSSSEEECS
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEEC
Confidence 88888888888888999999999999999999999999999986 58999999999884 4 569999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++.+
T Consensus 572 ~~~~l~~ 578 (598)
T 3qf4_B 572 KHDELIQ 578 (598)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9999875
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3e-39 Score=365.46 Aligned_cols=218 Identities=25% Similarity=0.418 Sum_probs=173.7
Q ss_pred E-EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765 28 E-IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I 103 (606)
Q Consensus 28 ~-l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~ 103 (606)
. |+++||+++|+.+ .++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.+||++.. .
T Consensus 340 ~~i~~~~v~~~y~~~-----~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p-~~G~i~~~g~~i~~~~~ 413 (595)
T 2yl4_A 340 GALEFKNVHFAYPAR-----PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP-ASGTISLDGHDIRQLNP 413 (595)
T ss_dssp CCEEEEEEEEECSSC-----TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCC-SEEEEEETTEETTTBCH
T ss_pred CeEEEEEEEEEeCCC-----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCcEEEECCEEhhhCCH
Confidence 5 9999999997421 135699999999999999999999999999999999999877 5999999998753 3
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHh-------cCCcc--cccCCCCCC
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELI-------NNPRV--MFLDEPTTS 174 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~-------~~~~~--~~~de~~~~ 174 (606)
..+|+.++||+|++.+++. |+.+.+.. +.... .+.+ ++++.-+.+.+ .-|+- -..+|....
T Consensus 414 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~-~~~~~-----~~~~---~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~ 483 (595)
T 2yl4_A 414 VWLRSKIGTVSQEPILFSC-SIAENIAY-GADDP-----SSVT---AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483 (595)
T ss_dssp HHHHHSEEEECSSCCCCSS-BHHHHHHT-TSSST-----TTSC---HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCC
T ss_pred HHHHhceEEEccCCcccCC-CHHHHHhh-cCCCc-----cccC---HHHHHHHHHHcCCHHHHHhCcccccccccCCCCc
Confidence 5677889999999999875 99777654 32110 0112 22232222222 11211 134666789
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++.+ |+|+|+++|+++. + +.||++++|++|+++
T Consensus 484 LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLST-I-KNANMVAVLDQGKIT 560 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH-H-HHSSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-H-HcCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999976 8999999999863 4 569999999999999
Q ss_pred EEcChhHHHH
Q psy13765 255 YQGATDQLVN 264 (606)
Q Consensus 255 ~~G~~~~~~~ 264 (606)
+.|+++++.+
T Consensus 561 ~~g~~~~l~~ 570 (595)
T 2yl4_A 561 EYGKHEELLS 570 (595)
T ss_dssp EEECSCC---
T ss_pred EECCHHHHHh
Confidence 9999988753
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.1e-38 Score=327.45 Aligned_cols=202 Identities=22% Similarity=0.332 Sum_probs=149.2
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~ 106 (606)
..|+++||++. .+.+|+|+|++|++||+++|+||||||||||+|+|+|+.++ .+|+|.++|
T Consensus 39 ~~l~~~~l~~~----------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g-------- 99 (290)
T 2bbs_A 39 DSLSFSNFSLL----------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSG-------- 99 (290)
T ss_dssp ---------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE-EEEEEECCS--------
T ss_pred ceEEEEEEEEc----------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECC--------
Confidence 35899999974 14699999999999999999999999999999999999876 599999998
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHH----HHHHHHhcCCcc--cccCCCCCCCCchhh
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL----SIALELINNPRV--MFLDEPTTSNPNDQK 180 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv----~ia~~L~~~~~~--~~~de~~~~~s~g~~ 180 (606)
.++||+|++.+++. |+.+.+. +... .....+++ .+...+-..|.. ..++++...||||||
T Consensus 100 --~i~~v~Q~~~l~~~-tv~enl~--~~~~---------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~ 165 (290)
T 2bbs_A 100 --RISFCSQNSWIMPG-TIKENII--GVSY---------DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 165 (290)
T ss_dssp --CEEEECSSCCCCSS-BHHHHHH--TTCC---------CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHH
T ss_pred --EEEEEeCCCccCcc-cHHHHhh--Cccc---------chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHH
Confidence 38999999998885 9977766 4311 11111111 111111111111 134566789999999
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL-KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l-~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
||+.|||||+.+|++|+|||||+|||+.++..+.+.+ ++++ +|+|||++||++. .+ ..||++++|++|++++.|++
T Consensus 166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~g~~ 242 (290)
T 2bbs_A 166 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTF 242 (290)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999974 5554 4899999999975 34 56999999999999999999
Q ss_pred hHHHH
Q psy13765 260 DQLVN 264 (606)
Q Consensus 260 ~~~~~ 264 (606)
+++.+
T Consensus 243 ~~l~~ 247 (290)
T 2bbs_A 243 SELQN 247 (290)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88753
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.6e-38 Score=381.87 Aligned_cols=221 Identities=26% Similarity=0.398 Sum_probs=168.8
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
-.|+++||+|+|+.+ .++++|+|||++|+|||.+||+||||||||||+++|.|++.| .+|+|.+||.++ +.
T Consensus 1075 g~I~f~nVsf~Y~~~-----~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-~~G~I~iDG~di~~i~~ 1148 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER-----PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT-LGGEIFIDGSEIKTLNP 1148 (1321)
T ss_dssp CCEEEEEEEECCTTS-----CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC-SSSEEEETTEETTTBCH
T ss_pred CeEEEEEEEEeCCCC-----CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC-CCCEEEECCEEhhhCCH
Confidence 369999999998642 345799999999999999999999999999999999999887 599999999865 45
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHH----HHHHhcCCccc--ccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSI----ALELINNPRVM--FLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~i----a~~L~~~~~~~--~~de~~~~~s~ 177 (606)
+.+|++++|||||+.+|+. |+.+.+. +|+++ .+.|-.|-.+++- ..-+..-|+=+ ...|....+||
T Consensus 1149 ~~lR~~i~~V~Qdp~LF~g-TIreNI~-~gld~------~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSg 1220 (1321)
T 4f4c_A 1149 EHTRSQIAIVSQEPTLFDC-SIAENII-YGLDP------SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSG 1220 (1321)
T ss_dssp HHHHTTEEEECSSCCCCSE-EHHHHHS-SSSCT------TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCH
T ss_pred HHHHhheEEECCCCEeeCc-cHHHHHh-ccCCC------CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCH
Confidence 7889999999999999875 5543321 23221 1122222211110 00011112111 22344555666
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||++|||||+++|+||+||||||+||+.+...|.+.|+++. +|+|+|+++|+++. + ..||+|++|++|++++.|
T Consensus 1221 GQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT-i-~~aD~I~Vld~G~IvE~G 1297 (1321)
T 4f4c_A 1221 GQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT-V-MNADCIAVVSNGTIIEKG 1297 (1321)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST-T-TTCSEEEEESSSSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH-H-HhCCEEEEEECCEEEEEC
Confidence 77777777777777799999999999999999999999998764 48999999999985 3 789999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++|+++
T Consensus 1298 th~eLl~ 1304 (1321)
T 4f4c_A 1298 THTQLMS 1304 (1321)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9999986
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.4e-37 Score=373.20 Aligned_cols=216 Identities=27% Similarity=0.434 Sum_probs=170.6
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
-.|+++|++|+|+.. .++++|+|+|++|++||.+||+||||||||||+++|.|++++ .+|+|.+||.+. +.
T Consensus 414 g~I~~~nvsF~Y~~~-----~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~-~~G~I~idG~~i~~~~~ 487 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR-----PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV-LKGKITIDGVDVRDINL 487 (1321)
T ss_dssp CCEEEEEEEECCSSS-----TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC-SEEEEEETTEETTTSCH
T ss_pred CcEEEEEeeeeCCCC-----CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc-ccCcccCCCccchhccH
Confidence 369999999998632 356899999999999999999999999999999999999887 599999999864 45
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhc-------CCc--ccccCCCCCC
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN-------NPR--VMFLDEPTTS 174 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~-------~~~--~~~~de~~~~ 174 (606)
+.+|+.++||+|++.++.. |+.|.+. +|.++ .+ .+++.-|..++. -|+ --...|....
T Consensus 488 ~~lr~~i~~v~Q~~~Lf~~-TI~eNI~-~g~~~--------~~---~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~ 554 (1321)
T 4f4c_A 488 EFLRKNVAVVSQEPALFNC-TIEENIS-LGKEG--------IT---REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQ 554 (1321)
T ss_dssp HHHHHHEEEECSSCCCCSE-EHHHHHH-TTCTT--------CC---HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCC
T ss_pred HHHhhcccccCCcceeeCC-chhHHHh-hhccc--------ch---HHHHHHHHHHccchhHHHcCCCCCccEecCCCCC
Confidence 7789999999999999875 5544332 23211 11 122222222221 111 1133455566
Q ss_pred CCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE
Q psy13765 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~ 254 (606)
||||||||++||||+++||+||+||||||+||+.+...+.+.|+++.+ |+|+|+++|+++. .+.||+|++|++|+++
T Consensus 555 LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~aD~Iivl~~G~iv 631 (1321)
T 4f4c_A 555 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRNADLIISCKNGQVV 631 (1321)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTTCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHH--HHhCCEEEEeeCCeee
Confidence 777777777777778888999999999999999999999999998764 8999999999884 4889999999999999
Q ss_pred EEcChhHHHH
Q psy13765 255 YQGATDQLVN 264 (606)
Q Consensus 255 ~~G~~~~~~~ 264 (606)
+.|+++|+.+
T Consensus 632 e~Gth~eL~~ 641 (1321)
T 4f4c_A 632 EVGDHRALMA 641 (1321)
T ss_dssp EEECHHHHHT
T ss_pred ccCCHHHHHH
Confidence 9999999874
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2e-36 Score=367.99 Aligned_cols=219 Identities=25% Similarity=0.424 Sum_probs=174.6
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---Ch
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NI 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~ 103 (606)
-.|+++||+|+|+.+ .++++|+|||+++++||++||+||||||||||+++|+|+.++ .+|+|.+||++. +.
T Consensus 386 g~i~~~~v~~~y~~~-----~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~-~~G~i~i~g~~i~~~~~ 459 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSR-----KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP-LDGMVSIDGQDIRTINV 459 (1284)
T ss_dssp CCEEEEEEEECCSST-----TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC-SEEEEEETTEEGGGSCH
T ss_pred CeEEEEEEEEEcCCC-----CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEHHhCCH
Confidence 369999999998532 235799999999999999999999999999999999999887 599999999764 45
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHH-HH--HH-HhcCCcc--cccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS-IA--LE-LINNPRV--MFLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~-ia--~~-L~~~~~~--~~~de~~~~~s~ 177 (606)
..+|+.+|||+|++.+++. |+.+.+.. |..+ .+..+..+.. .+ .+ +..-|+= -..+|....|||
T Consensus 460 ~~~r~~i~~v~Q~~~l~~~-ti~eNi~~-g~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 529 (1284)
T 3g5u_A 460 RYLREIIGVVSQEPVLFAT-TIAENIRY-GRED--------VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSG 529 (1284)
T ss_dssp HHHHHHEEEECSSCCCCSS-CHHHHHHH-HCSS--------CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCH
T ss_pred HHHHhheEEEcCCCccCCc-cHHHHHhc-CCCC--------CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCH
Confidence 6778899999999999986 88665543 2111 1222222211 10 11 1112221 135677788999
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
|||||++|||||+++|+||+||||||+||+.+...+.+.++++. +|+|+|+++|+++. + ..||+|++|++|++++.|
T Consensus 530 Gq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl~~G~i~~~g 606 (1284)
T 3g5u_A 530 GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGFDGGVIVEQG 606 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEECSSSCCCCEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999998875 48999999999873 4 569999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++.+
T Consensus 607 ~~~~l~~ 613 (1284)
T 3g5u_A 607 NHDELMR 613 (1284)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9999875
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.8e-36 Score=364.64 Aligned_cols=221 Identities=24% Similarity=0.385 Sum_probs=175.3
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---h
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---I 103 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~ 103 (606)
-.|+++||+++|+.+ .++++|+|+|++|++||++||+||||||||||+++|+|+.++ .+|+|.+||++.. .
T Consensus 1029 g~i~~~~v~~~y~~~-----~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p-~~G~I~i~g~~i~~~~~ 1102 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR-----PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP-MAGSVFLDGKEIKQLNV 1102 (1284)
T ss_dssp CCEEEEEEEBCCSCG-----GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC-SEEEEESSSSCTTSSCH
T ss_pred CcEEEEEEEEECCCC-----CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCEEcccCCH
Confidence 369999999998531 235799999999999999999999999999999999999887 5999999998753 4
Q ss_pred hhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHH---HHHHhc-CCccc--ccCCCCCCCCc
Q psy13765 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSI---ALELIN-NPRVM--FLDEPTTSNPN 177 (606)
Q Consensus 104 ~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~i---a~~L~~-~~~~~--~~de~~~~~s~ 177 (606)
+.+|+.++||||++.+++ .|+.+.+.. +.. ....+..+..+..- +...+. .|+=+ ..+|....|||
T Consensus 1103 ~~~r~~i~~v~Q~~~l~~-~ti~eNi~~-~~~------~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSg 1174 (1284)
T 3g5u_A 1103 QWLRAQLGIVSQEPILFD-CSIAENIAY-GDN------SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSG 1174 (1284)
T ss_dssp HHHTTSCEEEESSCCCCS-SBHHHHHTC-CCS------SCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCH
T ss_pred HHHHhceEEECCCCcccc-ccHHHHHhc-cCC------CCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCH
Confidence 567889999999998875 588665532 111 01123333222211 112222 22211 34567778999
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
||||||.|||||+++|+||+|||||+|||+.+...+.+.|+++ .+|+|+|+++|+++. + +.||||++|++|++++.|
T Consensus 1175 Gq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~G~i~~~g 1251 (1284)
T 3g5u_A 1175 GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQNGKVKEHG 1251 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEETBEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999885 458999999999885 5 669999999999999999
Q ss_pred ChhHHHH
Q psy13765 258 ATDQLVN 264 (606)
Q Consensus 258 ~~~~~~~ 264 (606)
+++++.+
T Consensus 1252 ~~~~l~~ 1258 (1284)
T 3g5u_A 1252 THQQLLA 1258 (1284)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9999875
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.7e-35 Score=331.28 Aligned_cols=206 Identities=17% Similarity=0.239 Sum_probs=165.7
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA 105 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~ 105 (606)
...++++|+++.|. + ..|+++|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.+
T Consensus 355 ~~~l~~~~l~~~~~--------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p-~~G~I~~--------- 415 (607)
T 3bk7_A 355 ETLVEYPRLVKDYG--------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP-TEGKVEW--------- 415 (607)
T ss_dssp CEEEEECCEEEECS--------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC-SBSCCCC---------
T ss_pred ceEEEEeceEEEec--------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEE---------
Confidence 45799999998752 2 368999999999999999999999999999999999876 5899875
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I 185 (606)
++.++|++|+....+.+||.+.+....... . ..++++.-+.+.+.-. -..|.+...|||||||||.|
T Consensus 416 -~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~--------~--~~~~~~~~~l~~~~l~--~~~~~~~~~LSGGe~QRv~i 482 (607)
T 3bk7_A 416 -DLTVAYKPQYIKAEYEGTVYELLSKIDSSK--------L--NSNFYKTELLKPLGII--DLYDRNVEDLSGGELQRVAI 482 (607)
T ss_dssp -CCCEEEECSSCCCCCSSBHHHHHHHHHHHH--------H--HCHHHHHHTHHHHTCT--TTTTSBGGGCCHHHHHHHHH
T ss_pred -eeEEEEEecCccCCCCCcHHHHHHhhhccC--------C--CHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHH
Confidence 246999999988888899977664320000 0 1123332222222211 15678888889999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecC--CcEEEEcChhHH
Q psy13765 186 ALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSG--GQCLYQGATDQL 262 (606)
Q Consensus 186 A~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~~~~~G~~~~~ 262 (606)
|+||+.+|++|+|||||+|||+.++..+.++|+++++ +|.|||+++||+. .+..+|||+++|++ |+++..|+++++
T Consensus 483 AraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~ 561 (607)
T 3bk7_A 483 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGM 561 (607)
T ss_dssp HHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHHH
Confidence 9999999999999999999999999999999999975 6999999999976 57789999999986 888899999887
Q ss_pred HH
Q psy13765 263 VN 264 (606)
Q Consensus 263 ~~ 264 (606)
.+
T Consensus 562 ~~ 563 (607)
T 3bk7_A 562 RE 563 (607)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.2e-35 Score=328.15 Aligned_cols=205 Identities=18% Similarity=0.273 Sum_probs=166.9
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA 105 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~ 105 (606)
...++++|+++.|. + ..|+++|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.+
T Consensus 285 ~~~l~~~~l~~~~~--------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-~~G~i~~--------- 345 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG--------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP-TEGKIEW--------- 345 (538)
T ss_dssp CEEEEECCEEEEET--------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC-SBCCCCC---------
T ss_pred CeEEEEeeEEEEEC--------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEE---------
Confidence 45799999998862 2 368999999999999999999999999999999999876 5899875
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~ 184 (606)
...++||+|+....+.+||.+++....... .+ ++++ +.+++..-.+- ..|.+...|||||||||.
T Consensus 346 -~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~--------~~--~~~~---~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~ 411 (538)
T 1yqt_A 346 -DLTVAYKPQYIKADYEGTVYELLSKIDASK--------LN--SNFY---KTELLKPLGIIDLYDREVNELSGGELQRVA 411 (538)
T ss_dssp -CCCEEEECSSCCCCCSSBHHHHHHHHHHHH--------HT--CHHH---HHHTTTTTTCGGGTTSBGGGCCHHHHHHHH
T ss_pred -CceEEEEecCCcCCCCCcHHHHHHhhhccC--------CC--HHHH---HHHHHHHcCChhhhcCChhhCCHHHHHHHH
Confidence 246999999998888899977765320000 00 1222 33444443332 567888889999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecC--CcEEEEcChhH
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSG--GQCLYQGATDQ 261 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~~~~~G~~~~ 261 (606)
||+||+.+|++|+|||||+|||+.++..+.++|+++++ +|.|||++|||+. .+..+|||+++|++ |+++..|++++
T Consensus 412 lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 412 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 99999999999999999999999999999999999974 5999999999976 57789999999986 88999999988
Q ss_pred HHH
Q psy13765 262 LVN 264 (606)
Q Consensus 262 ~~~ 264 (606)
+.+
T Consensus 491 ~~~ 493 (538)
T 1yqt_A 491 MRE 493 (538)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.3e-34 Score=320.79 Aligned_cols=206 Identities=18% Similarity=0.221 Sum_probs=163.3
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA 105 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~ 105 (606)
...++++|+++.+. + ..|+++|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|
T Consensus 267 ~~~l~~~~l~~~~~--------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~~------- 329 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG--------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA-DEGSVTPEK------- 329 (538)
T ss_dssp CEEEEECCEEEEET--------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-SBCCEESSC-------
T ss_pred cceEEEcceEEEEC--------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECC-------
Confidence 45789999998862 2 358888999999999999999999999999999999887 599998764
Q ss_pred hcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc-ccCCCCCCCCchhhhHHH
Q psy13765 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM-FLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~~de~~~~~s~g~~krl~ 184 (606)
+.++|++|+.......||.+.+...... . ++. .+++ +.+++..-.+- ..|.++..|||||||||.
T Consensus 330 --~~i~~~~q~~~~~~~~tv~~~l~~~~~~-~-------~~~-~~~~---~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~ 395 (538)
T 3ozx_A 330 --QILSYKPQRIFPNYDGTVQQYLENASKD-A-------LST-SSWF---FEEVTKRLNLHRLLESNVNDLSGGELQKLY 395 (538)
T ss_dssp --CCEEEECSSCCCCCSSBHHHHHHHHCSS-T-------TCT-TSHH---HHHTTTTTTGGGCTTSBGGGCCHHHHHHHH
T ss_pred --eeeEeechhcccccCCCHHHHHHHhhhh-c-------cch-hHHH---HHHHHHHcCCHHHhcCChhhCCHHHHHHHH
Confidence 3589999998777788987776653111 0 000 1111 23334333332 567888888888888888
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecC--CcEEEEcChhH
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSG--GQCLYQGATDQ 261 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~~~~~G~~~~ 261 (606)
||+||+.+|++|||||||+|||+.++.++.++|+++++ .|.|||++|||+. .+..+||||++|++ |.....+++.+
T Consensus 396 iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~ 474 (538)
T 3ozx_A 396 IAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVT 474 (538)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHH
Confidence 99999999999999999999999999999999999976 5999999999976 57789999999986 66777777655
Q ss_pred HH
Q psy13765 262 LV 263 (606)
Q Consensus 262 ~~ 263 (606)
+.
T Consensus 475 ~~ 476 (538)
T 3ozx_A 475 LK 476 (538)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-34 Score=319.42 Aligned_cols=202 Identities=17% Similarity=0.219 Sum_probs=153.3
Q ss_pred EeeEEEEecCCcccccccccceeeeEEEeCC-----eEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhh
Q psy13765 32 KDLTYTVSTGLGFKQEPKDVLKNLCGRFPSN-----QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106 (606)
Q Consensus 32 ~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~G-----e~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~ 106 (606)
++++++|+ ..+.+++|+|+++++| |+++|+||||||||||+++|+|+.++ .+|+. ..
T Consensus 350 ~~~~~~y~-------~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p-~~G~~------~~---- 411 (608)
T 3j16_B 350 ASRAFSYP-------SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-DEGQD------IP---- 411 (608)
T ss_dssp SSSCCEEC-------CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC-SBCCC------CC----
T ss_pred cceeEEec-------CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC-CCCcC------cc----
Confidence 55666653 2245789999999998 78999999999999999999999877 47752 11
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA 186 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA 186 (606)
+..++|++|+.......|+.+.+.. .+. . .... ++++.-+.+.+.-. -..|.++..|||||||||.||
T Consensus 412 ~~~i~~~~q~~~~~~~~tv~e~~~~-~~~---~----~~~~--~~~~~~~l~~l~l~--~~~~~~~~~LSGGqkQRv~iA 479 (608)
T 3j16_B 412 KLNVSMKPQKIAPKFPGTVRQLFFK-KIR---G----QFLN--PQFQTDVVKPLRID--DIIDQEVQHLSGGELQRVAIV 479 (608)
T ss_dssp SCCEEEECSSCCCCCCSBHHHHHHH-HCS---S----TTTS--HHHHHHTHHHHTST--TTSSSBSSSCCHHHHHHHHHH
T ss_pred CCcEEEecccccccCCccHHHHHHH-Hhh---c----cccc--HHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHH
Confidence 3468999999776666788665432 110 0 0101 11221111111111 146778888888888888889
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecC--CcEEEEcChhHHH
Q psy13765 187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSG--GQCLYQGATDQLV 263 (606)
Q Consensus 187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~~~~~G~~~~~~ 263 (606)
+||+.+|++|+|||||+|||+.++..++++|+++++ +|+|||++|||+. .+..+|||+++|++ |+++..|+|+++.
T Consensus 480 raL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~ 558 (608)
T 3j16_B 480 LALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLL 558 (608)
T ss_dssp HHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHH
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHh
Confidence 999999999999999999999999999999999864 5999999999976 57789999999986 9999999998887
Q ss_pred H
Q psy13765 264 N 264 (606)
Q Consensus 264 ~ 264 (606)
+
T Consensus 559 ~ 559 (608)
T 3j16_B 559 T 559 (608)
T ss_dssp H
T ss_pred h
Confidence 5
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.6e-34 Score=323.18 Aligned_cols=180 Identities=22% Similarity=0.311 Sum_probs=142.9
Q ss_pred EeeEEEEecCCccccccc-ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEE---------EECCccC
Q psy13765 32 KDLTYTVSTGLGFKQEPK-DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI---------LTNGHSR 101 (606)
Q Consensus 32 ~nl~~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I---------~~~G~~~ 101 (606)
+||+++| +++ .+|+|+| ++++||+++|+||||||||||||+|+|+.+| .+|++ .++|.+.
T Consensus 95 ~~ls~~y--------g~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p-~~G~~~~~~~~~~~~~~G~~~ 164 (607)
T 3bk7_A 95 EDCVHRY--------GVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIP-NLCEDNDSWDNVIRAFRGNEL 164 (607)
T ss_dssp GSEEEEC--------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCC-CTTTTCCCHHHHHHHTTTSTH
T ss_pred CCeEEEE--------CCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCC-CCCccccccchhhheeCCEeh
Confidence 6677665 333 4899999 9999999999999999999999999999876 47885 4566543
Q ss_pred Ch---h--hhcccEEEEccCCCCCCC---Cc-------------HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHh
Q psy13765 102 NI---N--AFRRVSCYIQQDDRLQPL---LT-------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELI 160 (606)
Q Consensus 102 ~~---~--~~~~~~~yv~Q~~~l~~~---lt-------------v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~ 160 (606)
.. . ..+..+++++|.....+. .| ++++++.+||.+..++.+++|||||||||+||++|+
T Consensus 165 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~ 244 (607)
T 3bk7_A 165 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALL 244 (607)
T ss_dssp HHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHh
Confidence 21 0 113457888887433221 13 456677788888788888888888888888666666
Q ss_pred cCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q psy13765 161 NNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ 240 (606)
Q Consensus 161 ~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~ 240 (606)
.+ |++|||||||+|||+.++..+.++|++++++|.|||+++||+. .+..
T Consensus 245 ~~------------------------------P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~ 293 (607)
T 3bk7_A 245 RK------------------------------AHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDY 293 (607)
T ss_dssp SC------------------------------CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHH
T ss_pred cC------------------------------CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHh
Confidence 65 9999999999999999999999999999888999999999976 5778
Q ss_pred hcceeeeecCCc
Q psy13765 241 MFDQVYLLSGGQ 252 (606)
Q Consensus 241 ~~D~v~~L~~G~ 252 (606)
+||++++|+++.
T Consensus 294 ~adri~vl~~~~ 305 (607)
T 3bk7_A 294 LSDVIHVVYGEP 305 (607)
T ss_dssp HCSEEEEEESCT
T ss_pred hCCEEEEECCCc
Confidence 999999998654
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=7.9e-34 Score=316.94 Aligned_cols=184 Identities=23% Similarity=0.304 Sum_probs=143.4
Q ss_pred EEEE-EeeEEEEecCCccccccc-ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEE---------EE
Q psy13765 28 EIKF-KDLTYTVSTGLGFKQEPK-DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI---------LT 96 (606)
Q Consensus 28 ~l~~-~nl~~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I---------~~ 96 (606)
..++ +||+++| +++ .+|+|+| ++++||+++|+||||||||||+|+|+|+.+| .+|++ .+
T Consensus 20 ~~~~~~~ls~~y--------g~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p-~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 20 MEQLEEDCVHRY--------GVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIP-NLCGDNDSWDGVIRAF 89 (538)
T ss_dssp ----CCCEEEEC--------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC-CTTTTCCSHHHHHHHT
T ss_pred ChhHhcCcEEEE--------CCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCccCcchhhhHHhh
Confidence 3455 5888876 223 4899999 9999999999999999999999999999876 47885 35
Q ss_pred CCccCCh---h--hhcccEEEEccCCCCCCC---Cc-------------HHHHHHHcCCccccCCccccCChHHHHHHHH
Q psy13765 97 NGHSRNI---N--AFRRVSCYIQQDDRLQPL---LT-------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSI 155 (606)
Q Consensus 97 ~G~~~~~---~--~~~~~~~yv~Q~~~l~~~---lt-------------v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~i 155 (606)
+|.+... . ..+..+++++|+....+. .| ++++++.+|+.+..++++.+|||||||||+|
T Consensus 90 ~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~i 169 (538)
T 1yqt_A 90 RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAI 169 (538)
T ss_dssp TTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHH
Confidence 6654321 1 112457899987544332 13 3566777788777788888888888888886
Q ss_pred HHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 156 a~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
|++|+.+ |++|+|||||+|||+.++..+.++|++++++|.|||+++||+.
T Consensus 170 AraL~~~------------------------------P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~ 219 (538)
T 1yqt_A 170 AAALLRN------------------------------ATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA 219 (538)
T ss_dssp HHHHHSC------------------------------CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHhcC------------------------------CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 6666655 9999999999999999999999999999888999999999976
Q ss_pred hHHHhhcceeeeecCCc
Q psy13765 236 ATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 236 ~~i~~~~D~v~~L~~G~ 252 (606)
.+.++||++++|++|.
T Consensus 220 -~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 220 -VLDYLSDIIHVVYGEP 235 (538)
T ss_dssp -HHHHHCSEEEEEEEET
T ss_pred -HHHHhCCEEEEEcCcc
Confidence 5778999999998654
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.8e-33 Score=320.84 Aligned_cols=209 Identities=21% Similarity=0.360 Sum_probs=133.6
Q ss_pred ccccceeeeEEEeCCeEEEEECCCCCCHHHHH---------------------HHHhCCCCCC------CccEEEECCcc
Q psy13765 48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL---------------------DVLSGYRSNG------VTGQILTNGHS 100 (606)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL---------------------~~L~g~~~~~------~~G~I~~~G~~ 100 (606)
.+.+|+|||++|++||+++|+||||||||||+ +++.|+..+. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45799999999999999999999999999998 7777776553 14667777754
Q ss_pred CChhhhcccEEEEccCCCCC-------------------CCCcHHHHHHHc-CCcccc-CCccccCC-hHHHHHHHHHHH
Q psy13765 101 RNINAFRRVSCYIQQDDRLQ-------------------PLLTIENVMSLL-GLDESQ-NTRSSQLS-GGQKKRLSIALE 158 (606)
Q Consensus 101 ~~~~~~~~~~~yv~Q~~~l~-------------------~~ltv~~~l~~~-gl~~~~-~~~~~~lS-gGqrqRv~ia~~ 158 (606)
.. ...++.+++|+|...++ +.+|+.+.+... ++.... +......- .--.+++.
T Consensus 110 ~~-~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 184 (670)
T 3ux8_A 110 TS-RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLG---- 184 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC--------------------------CHHHHH----
T ss_pred hh-ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH----
Confidence 32 12244566666654432 334554443321 110000 00000000 00011111
Q ss_pred HhcCCcc--cccCCCCCCCCchhhhHHHHHHhhhcCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy13765 159 LINNPRV--MFLDEPTTSNPNDQKKRLSIALELINNPR--VMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP 234 (606)
Q Consensus 159 L~~~~~~--~~~de~~~~~s~g~~krl~IA~aL~~~P~--lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 234 (606)
++..-.+ ..+|.+...|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|++++++|.|||++|||+
T Consensus 185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 1111111 13577788888888888888888888888 9999999999999999999999999988899999999997
Q ss_pred chHHHhhcceeeee------cCCcEEEEcChhHHH
Q psy13765 235 SATLFQMFDQVYLL------SGGQCLYQGATDQLV 263 (606)
Q Consensus 235 ~~~i~~~~D~v~~L------~~G~~~~~G~~~~~~ 263 (606)
. .+ ..||++++| ++|++++.|+++++.
T Consensus 265 ~-~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 265 D-TM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp H-HH-HHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred H-HH-hhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 6 34 569999999 899999999999875
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.98 E-value=6.2e-32 Score=315.58 Aligned_cols=201 Identities=20% Similarity=0.288 Sum_probs=156.2
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA 105 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~ 105 (606)
+..+...|++++| +++.+|+|+|+++++||+++|+||||||||||+|+|+| |+| +|.+.. ..
T Consensus 433 ~~~L~~~~ls~~y--------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-------G~i--~g~~~~-~~ 494 (986)
T 2iw3_A 433 GEDLCNCEFSLAY--------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-------GQV--DGFPTQ-EE 494 (986)
T ss_dssp SCEEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-------TCS--TTCCCT-TT
T ss_pred cceeEEeeEEEEE--------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-------CCc--CCCccc-cc
Confidence 4467777999887 34679999999999999999999999999999999994 322 343321 11
Q ss_pred hcccEEEEccCC-CCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765 106 FRRVSCYIQQDD-RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 106 ~~~~~~yv~Q~~-~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~ 184 (606)
..++|++|+. .+++.+|+.+.+.. .. .+. ++|+.-+.+.+.-++ -.+|.+...||||||||+.
T Consensus 495 --~~~~~v~q~~~~~~~~ltv~e~l~~-~~--------~~~----~~~v~~~L~~lgL~~-~~~~~~~~~LSGGqkQRva 558 (986)
T 2iw3_A 495 --CRTVYVEHDIDGTHSDTSVLDFVFE-SG--------VGT----KEAIKDKLIEFGFTD-EMIAMPISALSGGWKMKLA 558 (986)
T ss_dssp --SCEEETTCCCCCCCTTSBHHHHHHT-TC--------SSC----HHHHHHHHHHTTCCH-HHHHSBGGGCCHHHHHHHH
T ss_pred --eeEEEEcccccccccCCcHHHHHHH-hh--------cCH----HHHHHHHHHHcCCCh-hhhcCCcccCCHHHHHHHH
Confidence 2368999984 67788898776653 10 011 444443333332110 1457788889999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEE-EEcChhHHH
Q psy13765 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL-YQGATDQLV 263 (606)
Q Consensus 185 IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~-~~G~~~~~~ 263 (606)
||+||+.+|++|||||||+|||+.++..+.+.|++ +|.|||++|||.. .+.++||++++|++|+++ +.|+++++.
T Consensus 559 LArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 559 LARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp HHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 99999999999999999999999999999999987 5899999999976 577899999999999996 789998876
Q ss_pred H
Q psy13765 264 N 264 (606)
Q Consensus 264 ~ 264 (606)
.
T Consensus 635 ~ 635 (986)
T 2iw3_A 635 K 635 (986)
T ss_dssp H
T ss_pred h
Confidence 4
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.98 E-value=1.5e-32 Score=320.68 Aligned_cols=211 Identities=22% Similarity=0.298 Sum_probs=152.6
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhh
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA 105 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~ 105 (606)
...|+++|++++|+ .+++++|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.++|.
T Consensus 669 ~~mL~v~nLs~~Y~------g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P-~sG~I~~~~~------ 735 (986)
T 2iw3_A 669 KAIVKVTNMEFQYP------GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP-TSGEVYTHEN------ 735 (986)
T ss_dssp SEEEEEEEEEECCT------TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC-SEEEEEECTT------
T ss_pred CceEEEEeeEEEeC------CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEEcCc------
Confidence 34699999999863 1236799999999999999999999999999999999999877 5999999863
Q ss_pred hcccEEEEccCCCC----CCCCcHHHHHHHc---CCc-----c----c--cC--------------C-------------
Q psy13765 106 FRRVSCYIQQDDRL----QPLLTIENVMSLL---GLD-----E----S--QN--------------T------------- 140 (606)
Q Consensus 106 ~~~~~~yv~Q~~~l----~~~ltv~~~l~~~---gl~-----~----~--~~--------------~------------- 140 (606)
..++|++|++.. ....|+.+.+... |-+ . . .+ +
T Consensus 736 --~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~ 813 (986)
T 2iw3_A 736 --CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKN 813 (986)
T ss_dssp --CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETT
T ss_pred --cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcc
Confidence 248999987532 1234665544321 100 0 0 00 0
Q ss_pred -------------------ccccCCh-------------H----------------------HHHHHHHHHHHhcCCccc
Q psy13765 141 -------------------RSSQLSG-------------G----------------------QKKRLSIALELINNPRVM 166 (606)
Q Consensus 141 -------------------~~~~lSg-------------G----------------------qrqRv~ia~~L~~~~~~~ 166 (606)
....++. | .++++ .+++..-.+-
T Consensus 814 ~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i---~~~Le~lGL~ 890 (986)
T 2iw3_A 814 TYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEI---EEHCSMLGLD 890 (986)
T ss_dssp EEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHH---HHHHHHTTCC
T ss_pred cchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHH---HHHHHHcCCC
Confidence 0000000 0 01222 2233322331
Q ss_pred --c-cCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765 167 --F-LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD 243 (606)
Q Consensus 167 --~-~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 243 (606)
. .+.+...|||||||||.||+||+.+|++|+|||||+|||+.+...+.+.|+++ |.|||++|||++ .+.++||
T Consensus 891 ~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~D 966 (986)
T 2iw3_A 891 PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTE 966 (986)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCC
T ss_pred chhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-HHHHhCC
Confidence 2 46788899999999999999999999999999999999999999998888654 679999999976 5678999
Q ss_pred eeeeecCCcEEEEcC
Q psy13765 244 QVYLLSGGQCLYQGA 258 (606)
Q Consensus 244 ~v~~L~~G~~~~~G~ 258 (606)
++++|++|+++..|+
T Consensus 967 rVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 967 EVWAVKDGRMTPSGH 981 (986)
T ss_dssp EEECCBTTBCCC---
T ss_pred EEEEEECCEEEEeCC
Confidence 999999999987774
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=4.2e-31 Score=302.80 Aligned_cols=95 Identities=26% Similarity=0.464 Sum_probs=84.6
Q ss_pred ccCCCCCCCCchhhhHHHHHHhhhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765 167 FLDEPTTSNPNDQKKRLSIALELINNP---RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD 243 (606)
Q Consensus 167 ~~de~~~~~s~g~~krl~IA~aL~~~P---~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 243 (606)
.+|+++..|||||||||+|||||+.+| ++|+|||||+|||+.++.+++++|++++++|+|||+++||++ .+ +.||
T Consensus 536 ~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d 613 (670)
T 3ux8_A 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTAD 613 (670)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCS
T ss_pred hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HH-HhCC
Confidence 356777788888888888888888776 599999999999999999999999999988999999999986 34 7799
Q ss_pred eeeee------cCCcEEEEcChhHHH
Q psy13765 244 QVYLL------SGGQCLYQGATDQLV 263 (606)
Q Consensus 244 ~v~~L------~~G~~~~~G~~~~~~ 263 (606)
|+++| ++|++++.|+++++.
T Consensus 614 ~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 614 YIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred EEEEecCCcCCCCCEEEEecCHHHHH
Confidence 99999 899999999999985
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-31 Score=301.30 Aligned_cols=195 Identities=21% Similarity=0.329 Sum_probs=134.7
Q ss_pred EEEEeeEEEEecCCcccccc-cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEE-----------E
Q psy13765 29 IKFKDLTYTVSTGLGFKQEP-KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQIL-----------T 96 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~-----------~ 96 (606)
|++.||...+..+.+++++. ...|++++ .+++||+++|+||||||||||||+|+|+.+| .+|+|. +
T Consensus 70 i~i~nl~~~~~~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P-~~G~i~~~~~~~~~~~~~ 147 (608)
T 3j16_B 70 IQIINLPTNLEAHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKP-NLGRFDDPPEWQEIIKYF 147 (608)
T ss_dssp EEEEEESSSSSTTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC-CTTTTCCSSCHHHHHHHT
T ss_pred eEEecCChhhcCCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCC-CCceEecccchhhhhhee
Confidence 55555543332222222232 34677777 6899999999999999999999999999887 489872 3
Q ss_pred CCccCCh---hhhcccE--EEEccCCCCC------CCCc---------------HHHHHHHcCCccccCCccccCChHHH
Q psy13765 97 NGHSRNI---NAFRRVS--CYIQQDDRLQ------PLLT---------------IENVMSLLGLDESQNTRSSQLSGGQK 150 (606)
Q Consensus 97 ~G~~~~~---~~~~~~~--~yv~Q~~~l~------~~lt---------------v~~~l~~~gl~~~~~~~~~~lSgGqr 150 (606)
.|..... ....+.+ .+.+|..... +..+ ++++++.+|+.+..++.+.+||||||
T Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~ 227 (608)
T 3j16_B 148 RGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGEL 227 (608)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHH
T ss_pred cChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHH
Confidence 3322110 0111111 2333322110 1111 34566667777777777777777777
Q ss_pred HHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy13765 151 KRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICT 230 (606)
Q Consensus 151 qRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~ 230 (606)
|||+||++|+.+ |++|+|||||+|||+.++..+.++|++++++|+|||++
T Consensus 228 Qrv~iAraL~~~------------------------------p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~v 277 (608)
T 3j16_B 228 QRFAIGMSCVQE------------------------------ADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICV 277 (608)
T ss_dssp HHHHHHHHHHSC------------------------------CSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEE
T ss_pred HHHHHHHHHHhC------------------------------CCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 777655555555 99999999999999999999999999998889999999
Q ss_pred ecCCchHHHhhcceeeeecCCcEEEE
Q psy13765 231 IHQPSATLFQMFDQVYLLSGGQCLYQ 256 (606)
Q Consensus 231 ~H~~~~~i~~~~D~v~~L~~G~~~~~ 256 (606)
+|++. .+..++|++++|++|..++.
T Consensus 278 tHdl~-~~~~~~drv~vl~~~~~~~~ 302 (608)
T 3j16_B 278 EHDLS-VLDYLSDFVCIIYGVPSVYG 302 (608)
T ss_dssp CSCHH-HHHHHCSEEEEEESCTTTEE
T ss_pred eCCHH-HHHHhCCEEEEEeCCccccc
Confidence 99976 57889999999998776553
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=7.2e-31 Score=292.59 Aligned_cols=164 Identities=21% Similarity=0.303 Sum_probs=128.1
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEE-----------EECCccCCh---hhhc--ccEEEEccC----CC
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI-----------LTNGHSRNI---NAFR--RVSCYIQQD----DR 118 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I-----------~~~G~~~~~---~~~~--~~~~yv~Q~----~~ 118 (606)
.++||++||+||||||||||+|+|+|+..| .+|+| .++|++... .... ..+..+.|. +.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p-~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIP-NFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASK 100 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCC-CTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhh
Confidence 569999999999999999999999999877 48988 566754421 0011 123333333 22
Q ss_pred CCCC------------CcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHH
Q psy13765 119 LQPL------------LTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA 186 (606)
Q Consensus 119 l~~~------------ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA 186 (606)
++.. -.++++++.+|+.+..++.+.+|||||||||+||++|+.+
T Consensus 101 ~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~------------------------ 156 (538)
T 3ozx_A 101 FLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLRE------------------------ 156 (538)
T ss_dssp TCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSC------------------------
T ss_pred hccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC------------------------
Confidence 2221 1246677888888888888888999999988876666666
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEE
Q psy13765 187 LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 187 ~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
|++|+|||||+|||+.++..+.++|+++++ |+|||+++|++. .+..+||++++|++|...+
T Consensus 157 ------p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~~~ 217 (538)
T 3ozx_A 157 ------ADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESSVY 217 (538)
T ss_dssp ------CSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETTTE
T ss_pred ------CCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCcccc
Confidence 999999999999999999999999999976 999999999986 6789999999998765443
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=3.4e-29 Score=289.92 Aligned_cols=95 Identities=28% Similarity=0.427 Sum_probs=86.7
Q ss_pred ccCCCCCCCCchhhhHHHHHHhhhcC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765 167 FLDEPTTSNPNDQKKRLSIALELINN---PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD 243 (606)
Q Consensus 167 ~~de~~~~~s~g~~krl~IA~aL~~~---P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 243 (606)
.++++...|||||||||.||++|+.+ |+||||||||+|||+.+...+.++|++++++|.|||+++||++ .+ +.||
T Consensus 723 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aD 800 (842)
T 2vf7_A 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASD 800 (842)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCS
T ss_pred cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCC
Confidence 35788888999999999999999996 7999999999999999999999999999988999999999976 45 8899
Q ss_pred eeeee------cCCcEEEEcChhHHH
Q psy13765 244 QVYLL------SGGQCLYQGATDQLV 263 (606)
Q Consensus 244 ~v~~L------~~G~~~~~G~~~~~~ 263 (606)
++++| ++|++++.|+++++.
T Consensus 801 rii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 801 WVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp EEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred EEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 99999 799999999999874
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=1.3e-28 Score=285.64 Aligned_cols=96 Identities=26% Similarity=0.458 Sum_probs=85.5
Q ss_pred ccCCCCCCCCchhhhHHHHHHhhhcC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765 167 FLDEPTTSNPNDQKKRLSIALELINN---PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD 243 (606)
Q Consensus 167 ~~de~~~~~s~g~~krl~IA~aL~~~---P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 243 (606)
.++++...|||||||||.||++|+.+ |++|||||||+|||+.+...++++|++++++|.|||+++|++. .+ +.||
T Consensus 838 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aD 915 (972)
T 2r6f_A 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTAD 915 (972)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCS
T ss_pred cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCC
Confidence 46777888888888888888888876 4999999999999999999999999999988999999999976 34 7899
Q ss_pred eeeee------cCCcEEEEcChhHHHH
Q psy13765 244 QVYLL------SGGQCLYQGATDQLVN 264 (606)
Q Consensus 244 ~v~~L------~~G~~~~~G~~~~~~~ 264 (606)
++++| ++|++++.|+++++..
T Consensus 916 rIivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 916 YIIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp EEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred EEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 99999 7899999999998753
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=3.5e-28 Score=283.68 Aligned_cols=96 Identities=25% Similarity=0.458 Sum_probs=84.9
Q ss_pred ccCCCCCCCCchhhhHHHHHHhhhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765 167 FLDEPTTSNPNDQKKRLSIALELINNP---RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD 243 (606)
Q Consensus 167 ~~de~~~~~s~g~~krl~IA~aL~~~P---~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 243 (606)
.++++...|||||||||.||+||+++| +||||||||+|||+.+...+++.|++++++|.|||+++|+++ .+ +.||
T Consensus 798 ~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~-~i-~~AD 875 (916)
T 3pih_A 798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD-VI-KNAD 875 (916)
T ss_dssp BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCS
T ss_pred hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCC
Confidence 356777788888888888888887665 799999999999999999999999999988999999999975 34 6799
Q ss_pred eeeee------cCCcEEEEcChhHHHH
Q psy13765 244 QVYLL------SGGQCLYQGATDQLVN 264 (606)
Q Consensus 244 ~v~~L------~~G~~~~~G~~~~~~~ 264 (606)
+|++| ++|++++.|+++++.+
T Consensus 876 rIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 876 HIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred EEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 99999 8999999999999863
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.95 E-value=3.6e-28 Score=282.88 Aligned_cols=96 Identities=26% Similarity=0.448 Sum_probs=85.7
Q ss_pred ccCCCCCCCCchhhhHHHHHHhhhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765 167 FLDEPTTSNPNDQKKRLSIALELINNP---RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD 243 (606)
Q Consensus 167 ~~de~~~~~s~g~~krl~IA~aL~~~P---~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 243 (606)
.++++...|||||||||.||++|+.+| ++|||||||+|||+.+...+.++|++++++|.|||+++|++. .+ +.||
T Consensus 856 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aD 933 (993)
T 2ygr_A 856 RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD-VI-KTSD 933 (993)
T ss_dssp BTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCS
T ss_pred cccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCC
Confidence 467788888888888888888888764 999999999999999999999999999988999999999976 34 7899
Q ss_pred eeeee------cCCcEEEEcChhHHHH
Q psy13765 244 QVYLL------SGGQCLYQGATDQLVN 264 (606)
Q Consensus 244 ~v~~L------~~G~~~~~G~~~~~~~ 264 (606)
++++| ++|++++.|+++++..
T Consensus 934 rIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 934 WIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp EEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred EEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 99999 7899999999998764
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=7.9e-28 Score=259.73 Aligned_cols=80 Identities=13% Similarity=0.248 Sum_probs=73.4
Q ss_pred CCchhhhHHHHHHhhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee----
Q psy13765 175 NPNDQKKRLSIALELINNP--RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL---- 248 (606)
Q Consensus 175 ~s~g~~krl~IA~aL~~~P--~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L---- 248 (606)
+|||||||+.||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||+|||++. +.+.||++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcCeEEEEEEec
Confidence 5999999999999999999 9999999999999999999999999998 5899999999974 45889999999
Q ss_pred cCCcEEEEc
Q psy13765 249 SGGQCLYQG 257 (606)
Q Consensus 249 ~~G~~~~~G 257 (606)
++|+++...
T Consensus 373 ~~G~~~~~~ 381 (415)
T 4aby_A 373 EDGRTVSHV 381 (415)
T ss_dssp ETTEEEEEE
T ss_pred cCCceEEEE
Confidence 899987653
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.1e-29 Score=271.97 Aligned_cols=167 Identities=14% Similarity=0.122 Sum_probs=123.6
Q ss_pred eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcc-E-EEECCccCChhhhcccEEEEccCCCC---CCCCcHHH
Q psy13765 53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG-Q-ILTNGHSRNINAFRRVSCYIQQDDRL---QPLLTIEN 127 (606)
Q Consensus 53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G-~-I~~~G~~~~~~~~~~~~~yv~Q~~~l---~~~ltv~~ 127 (606)
.++|+++++|++++|+||||||||||+|+|+|+..+ .+| + |.+||. .++.++|++|+..+ .+.+|+.+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p-~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK-FNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH-HHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc-cCCceeEEEcCC------ccCCeeeeccchhhcccccccchhh
Confidence 478999999999999999999999999999999876 589 8 999982 25679999998843 33456543
Q ss_pred HH-------------------HHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHh
Q psy13765 128 VM-------------------SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE 188 (606)
Q Consensus 128 ~l-------------------~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~a 188 (606)
.+ +.+|+.+..+ +.+||||||||++ ||+|
T Consensus 202 ni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrla------------------------------lAra 249 (460)
T 2npi_A 202 PTWGQSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLG------------------------------QVVG 249 (460)
T ss_dssp TTCSCBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHH------------------------------HHHH
T ss_pred hhcccccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHH------------------------------HHHH
Confidence 22 1112222221 3345555555555 5555
Q ss_pred --hhcCCcE----EEEeC-CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc--h---HHHhhcce-----eeeec-C
Q psy13765 189 --LINNPRV----MFLDE-PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS--A---TLFQMFDQ-----VYLLS-G 250 (606)
Q Consensus 189 --L~~~P~l----llLDE-PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~--~---~i~~~~D~-----v~~L~-~ 250 (606)
|+.+|++ ||||| ||+|||+. ...+.+++++ .|+|+|+++|+.+ . .+.+++|+ +++|+ +
T Consensus 250 ~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~ 325 (460)
T 2npi_A 250 QRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKL 325 (460)
T ss_dssp HHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCC
T ss_pred HHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCC
Confidence 5566999 99999 99999999 4444444433 3889999999976 1 45589999 99999 9
Q ss_pred CcEEEEcChhHHH
Q psy13765 251 GQCLYQGATDQLV 263 (606)
Q Consensus 251 G~~~~~G~~~~~~ 263 (606)
|+++ .|+++++.
T Consensus 326 G~iv-~g~~~~~~ 337 (460)
T 2npi_A 326 DGVS-AVDDVYKR 337 (460)
T ss_dssp TTCC-CCCHHHHH
T ss_pred CcEE-ECCHHHHh
Confidence 9999 99987653
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=4.2e-26 Score=243.06 Aligned_cols=86 Identities=20% Similarity=0.392 Sum_probs=78.7
Q ss_pred cCCCCCCCCchhhhHHHHHHhhh------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q psy13765 168 LDEPTTSNPNDQKKRLSIALELI------NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM 241 (606)
Q Consensus 168 ~de~~~~~s~g~~krl~IA~aL~------~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~ 241 (606)
+|.++..|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|.|||+++|++.. .+.
T Consensus 273 ~~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~--~~~ 350 (365)
T 3qf7_A 273 IERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF--SEA 350 (365)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH--HTT
T ss_pred cCCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH--HHh
Confidence 35688889999999999999999 7999999999999999999999999999998889999999999753 688
Q ss_pred cceeeeecCCcEEE
Q psy13765 242 FDQVYLLSGGQCLY 255 (606)
Q Consensus 242 ~D~v~~L~~G~~~~ 255 (606)
+|++++|++|+++.
T Consensus 351 ~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 351 FDRKLRITGGVVVN 364 (365)
T ss_dssp CSCEEEEETTEEC-
T ss_pred CCEEEEEECCEEEe
Confidence 99999999999874
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.92 E-value=3.8e-27 Score=231.94 Aligned_cols=148 Identities=15% Similarity=0.163 Sum_probs=100.9
Q ss_pred ccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCC--CCCCCC
Q psy13765 46 QEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDD--RLQPLL 123 (606)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~--~l~~~l 123 (606)
.+++.+|+|+ ++||+++|+||||||||||+++|+|+ ++ .+|+|.......+....++.+|||+|++ .+.+..
T Consensus 10 ~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p-~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~ 83 (208)
T 3b85_A 10 LGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL-QSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYL 83 (208)
T ss_dssp HHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH-HTTSCSEEEEEECSCCTTCCCCSSCC------CTTT
T ss_pred HhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC-cCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHH
Confidence 3557799996 89999999999999999999999999 76 5888842111111123467899999986 110100
Q ss_pred cHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCC
Q psy13765 124 TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203 (606)
Q Consensus 124 tv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTs 203 (606)
......+. .. .. ++++ .+++.. . + |||||++||+||+.+|++|+|||||+
T Consensus 84 --~~~~~~~~--~~-------~~---~~~~---~~~l~~-g----------l--Gq~qrv~lAraL~~~p~lllLDEPts 133 (208)
T 3b85_A 84 --RPLHDALR--DM-------VE---PEVI---PKLMEA-G----------I--VEVAPLAYMRGRTLNDAFVILDEAQN 133 (208)
T ss_dssp --HHHHHHHT--TT-------SC---TTHH---HHHHHT-T----------S--EEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred --HHHHHHHH--Hh-------cc---HHHH---HHHHHh-C----------C--chHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 00001000 00 00 1222 122221 1 1 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 204 GLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 204 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
| ++..+.+.|+++ ++|+||| +|||++
T Consensus 134 ~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 134 T----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp C----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred c----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9 888999999988 6689999 999975
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=8.3e-26 Score=215.18 Aligned_cols=143 Identities=16% Similarity=0.232 Sum_probs=91.9
Q ss_pred eeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCC-CcHHHHHHHc
Q psy13765 54 NLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPL-LTIENVMSLL 132 (606)
Q Consensus 54 ~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~-ltv~~~l~~~ 132 (606)
|||+++++||+++|+||||||||||+|++.+ |...++ .+.++ |+++|++.-... -++.+.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~-------~~~~~~-----~d~~~---g~~~~~~~~~~~~~~~~~~~--- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK-------PTEVIS-----SDFCR---GLMSDDENDQTVTGAAFDVL--- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC-------GGGEEE-----HHHHH---HHHCSSTTCGGGHHHHHHHH---
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc-------CCeEEc-----cHHHH---HHhcCcccchhhHHHHHHHH---
Confidence 6899999999999999999999999999653 111111 11222 566666421100 0000000
Q ss_pred CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHH----
Q psy13765 133 GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQ---- 208 (606)
Q Consensus 133 gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~---- 208 (606)
...+.+........+.|.+ ...|+|||||+.||+|++.+|++|+|||||+|||+.
T Consensus 63 --------------------~~~~~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 63 --------------------HYIVSKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp --------------------HHHHHHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred --------------------HHHHHHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 0011111111111122322 223566666666777777779999999999999999
Q ss_pred ------------HHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 209 ------------SCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 209 ------------~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
...++.+.+++++++|.|+|+++|+++
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 568899999999878999999999976
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=4.2e-24 Score=223.71 Aligned_cols=92 Identities=18% Similarity=0.240 Sum_probs=75.5
Q ss_pred cCCCCCCCCchhhhHHHHHHhhh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcc
Q psy13765 168 LDEPTTSNPNDQKKRLSIALELI----NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD 243 (606)
Q Consensus 168 ~de~~~~~s~g~~krl~IA~aL~----~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 243 (606)
.|.+...+|+|||||++||++|+ .+|++++|||||++||+.....+.+.|++++ +|.|||+++|++. +.+.||
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d 289 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAAD 289 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCS
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCc
Confidence 45667789999999999999997 6899999999999999999999999999985 4899999999964 468899
Q ss_pred ee--eeecCCcE-EEEcChhHH
Q psy13765 244 QV--YLLSGGQC-LYQGATDQL 262 (606)
Q Consensus 244 ~v--~~L~~G~~-~~~G~~~~~ 262 (606)
++ ++|.+|+. +...+.++.
T Consensus 290 ~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 290 LLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp EEEEEEESSSCEEEEECCC---
T ss_pred eEEEEEEeCCEEEEEEEEcchh
Confidence 87 77777754 445555553
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.89 E-value=2.4e-25 Score=239.88 Aligned_cols=172 Identities=13% Similarity=0.133 Sum_probs=126.2
Q ss_pred cccceeeeEEEeCCe--------------------EEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc
Q psy13765 49 KDVLKNLCGRFPSNQ--------------------LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge--------------------~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~ 108 (606)
+.+|+|||+++++|+ +++|+||||||||||+|+|+|+.++ .+|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p-~~GsI~~~g~~~t----~- 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE-EEGAAKTGVVEVT----M- 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT-STTSCCCCC--------C-
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc-cCceEEECCeecc----e-
Confidence 568999999999999 9999999999999999999999876 5899999986542 1
Q ss_pred cEEEEccCCCCCCCCc-------------HHHHHHHcCCccccCCccccCChH--HHHHHHHHHHHhcC-CcccccCCCC
Q psy13765 109 VSCYIQQDDRLQPLLT-------------IENVMSLLGLDESQNTRSSQLSGG--QKKRLSIALELINN-PRVMFLDEPT 172 (606)
Q Consensus 109 ~~~yv~Q~~~l~~~lt-------------v~~~l~~~gl~~~~~~~~~~lSgG--qrqRv~ia~~L~~~-~~~~~~de~~ 172 (606)
.++++|++ .++.+| ++++++.+++.+.. ..+. +|+| ||||+.+|++|... .+++
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~~------ 179 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISMMKKEFY------ 179 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHHTTCEEE------
T ss_pred -eEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHhcCCCeE------
Confidence 27888875 344443 46677777766542 2223 7777 77777777766651 0000
Q ss_pred CCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CEEEEEecCCch-HHHhhc
Q psy13765 173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS-----QQG----RTIICTIHQPSA-TLFQMF 242 (606)
Q Consensus 173 ~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~-----~~g----~tii~~~H~~~~-~i~~~~ 242 (606)
...++|++++|||||+|||+.++.++.+.++++. +.| .+|++++|+.+. .+.+++
T Consensus 180 ---------------lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~ 244 (413)
T 1tq4_A 180 ---------------FVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLM 244 (413)
T ss_dssp ---------------EEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHH
T ss_pred ---------------EEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHH
Confidence 1112599999999999999999999999999985 333 678899998763 367788
Q ss_pred ceee-eecCC
Q psy13765 243 DQVY-LLSGG 251 (606)
Q Consensus 243 D~v~-~L~~G 251 (606)
|++. .|.+|
T Consensus 245 d~I~~~Lpeg 254 (413)
T 1tq4_A 245 DKLISDLPIY 254 (413)
T ss_dssp HHHHHHSCGG
T ss_pred HHHHHhCccc
Confidence 8875 44444
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=1.8e-24 Score=207.75 Aligned_cols=144 Identities=11% Similarity=0.098 Sum_probs=96.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC---ChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCc--ccc
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLD--ESQ 138 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~---~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~--~~~ 138 (606)
.++|+||||||||||+++|+|+.. |.++|... .....++.+||++|+.... ++++..++.. +..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~-----~~~~~~~~~~~~~~~ 70 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITTEGK-----KKIFSSKFFTSKKLV 70 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEETTCC-----EEEEEETTCCCSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecCcHH-----HHHHHhhcCCccccc
Confidence 589999999999999999999863 33444321 1113467799999976211 1111111111 234
Q ss_pred CCccccCChHHHHHHHHHHH-----HhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeC--CCCCCCHHHHH
Q psy13765 139 NTRSSQLSGGQKKRLSIALE-----LINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE--PTTGLDSQSCS 211 (606)
Q Consensus 139 ~~~~~~lSgGqrqRv~ia~~-----L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDE--PTsgLD~~~~~ 211 (606)
++++.+||||||||+++|++ ++.+ |++++||| ||++||+....
T Consensus 71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~------------------------------p~llilDEigp~~~ld~~~~~ 120 (178)
T 1ye8_A 71 GSYGVNVQYFEELAIPILERAYREAKKDR------------------------------RKVIIIDEIGKMELFSKKFRD 120 (178)
T ss_dssp TTEEECHHHHHHHHHHHHHHHHHHHHHCT------------------------------TCEEEECCCSTTGGGCHHHHH
T ss_pred cccccCcCHHHHHHHHHHhhccccccccC------------------------------CCEEEEeCCCCcccCCHHHHH
Confidence 55566778888777776664 5555 99999999 99999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEec--CCchHHHhhcceeeeecCCcEEE
Q psy13765 212 QCIKLLKMISQQGRTIICTIH--QPSATLFQMFDQVYLLSGGQCLY 255 (606)
Q Consensus 212 ~i~~~l~~l~~~g~tii~~~H--~~~~~i~~~~D~v~~L~~G~~~~ 255 (606)
.+.+.+++ .+.|+|+++| +....+..++|+ .+|+++.
T Consensus 121 ~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 121 LVRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHHHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 99888865 4778999997 234456677887 5566654
No 72
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.86 E-value=4.2e-25 Score=228.91 Aligned_cols=171 Identities=15% Similarity=0.244 Sum_probs=118.2
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhc
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR 107 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~ 107 (606)
.|+++||++.| + +.+|+|+|++|++|++++|+||||||||||+++|+|+. +|+|.
T Consensus 101 ~i~~~~vs~~y--------~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~------------ 155 (305)
T 2v9p_A 101 FFNYQNIELIT--------F-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVL------------ 155 (305)
T ss_dssp HHHHTTCCHHH--------H-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEE------------
T ss_pred eEEEEEEEEEc--------C-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEE------------
Confidence 37889998875 2 56999999999999999999999999999999999986 68884
Q ss_pred ccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH
Q psy13765 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL 187 (606)
Q Consensus 108 ~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~ 187 (606)
+|++|++.+++. |+.+ +.+.+.. ..+.+-.+ ....++ |+ .+| ...|||||||| ||
T Consensus 156 ---~~v~q~~~lf~~-ti~~--~ni~~~~-------~~~~~~~~---~i~~~L--~~--gld--g~~LSgGqkQR---AR 210 (305)
T 2v9p_A 156 ---SFANHKSHFWLA-SLAD--TRAALVD-------DATHACWR---YFDTYL--RN--ALD--GYPVSIDRKHK---AA 210 (305)
T ss_dssp ---CGGGTTSGGGGG-GGTT--CSCEEEE-------EECHHHHH---HHHHTT--TG--GGG--TCCEECCCSSC---CC
T ss_pred ---EEecCccccccc-cHHH--HhhccCc-------cccHHHHH---HHHHHh--Hc--cCC--ccCcCHHHHHH---HH
Confidence 345555555442 2210 0000000 01111111 111111 11 233 55788888888 89
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHHHH
Q psy13765 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLS 267 (606)
Q Consensus 188 aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~ 267 (606)
||+++|+||| ||+||+.+...+.. .+|+++. .+.+|++ +|++|++++.|+++++..+|.
T Consensus 211 All~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~~--~~~aD~i-vl~~G~iv~~g~~~el~~~y~ 269 (305)
T 2v9p_A 211 VQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQT--FRFEQPC-TDESGEQPFNITDADWKSFFV 269 (305)
T ss_dssp CEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEEE--EECCCCC-CCC---CCCCCCHHHHHHHHH
T ss_pred HHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHHH--HHhCCEE-EEeCCEEEEeCCHHHHHHHHH
Confidence 9999999999 99999999888752 1788763 4789999 999999999999999866665
Q ss_pred hC
Q psy13765 268 SV 269 (606)
Q Consensus 268 ~~ 269 (606)
.+
T Consensus 270 ~l 271 (305)
T 2v9p_A 270 RL 271 (305)
T ss_dssp HS
T ss_pred HH
Confidence 43
No 73
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.85 E-value=1.6e-22 Score=212.53 Aligned_cols=132 Identities=12% Similarity=0.188 Sum_probs=103.2
Q ss_pred cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC-ChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR-NINAFRRVSCYIQQDDRLQPLLTIENVM 129 (606)
Q Consensus 51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~-~~~~~~~~~~yv~Q~~~l~~~ltv~~~l 129 (606)
+++++|+.+++|++++|+||||||||||+|+|+|+.++ .+|.|.++|.+. .....++.+++++|
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~~~~~i~~~~g-------------- 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKHHKNYTQLFFG-------------- 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSSCSSEEEEECB--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccccchhEEEEEeC--------------
Confidence 79999999999999999999999999999999999876 589999999642 21223455665541
Q ss_pred HHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHH
Q psy13765 130 SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS 209 (606)
Q Consensus 130 ~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~ 209 (606)
|||+||++ ||+||..+|++|++||||+
T Consensus 225 -----------------gg~~~r~~------------------------------la~aL~~~p~ilildE~~~------ 251 (330)
T 2pt7_A 225 -----------------GNITSADC------------------------------LKSCLRMRPDRIILGELRS------ 251 (330)
T ss_dssp -----------------TTBCHHHH------------------------------HHHHTTSCCSEEEECCCCS------
T ss_pred -----------------CChhHHHH------------------------------HHHHhhhCCCEEEEcCCCh------
Confidence 55666665 5555555599999999998
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcE
Q psy13765 210 CSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 210 ~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~ 253 (606)
.++.+.|+.+...+.|+++|+|+++ ..+.+||+++|.+|+.
T Consensus 252 -~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 -SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp -THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred -HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 2356777777654458999999987 4588999999988753
No 74
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.85 E-value=3.2e-24 Score=210.20 Aligned_cols=187 Identities=8% Similarity=0.030 Sum_probs=108.2
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHH
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIE 126 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~ 126 (606)
+.+.+++| .++++||+++|+||||||||||+|+|+|+.+ ...+.+.+.+.+.. ...++.++|++|++..++.+|+.
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~-~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP-NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHST-TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC-ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhc
Confidence 34668888 6999999999999999999999999999874 23333222222211 22356789999998777666553
Q ss_pred HHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH---hhhcCCcEEEEeCCC
Q psy13765 127 NVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL---ELINNPRVMFLDEPT 202 (606)
Q Consensus 127 ~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~---aL~~~P~lllLDEPT 202 (606)
+.+... .....+-...+.+..+ ++++.-+..++ +| ....|.+..+-..+. +|+.+|++++|||||
T Consensus 83 ~~l~~~-~~~~~n~~~~g~~~~~~~~~~~~~~~~~-------~~---l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~ 151 (207)
T 1znw_A 83 GELLEW-AEIHGGLHRSGTLAQPVRAAAATGVPVL-------IE---VDLAGARAIKKTMPEAVTVFLAPPSWQDLQARL 151 (207)
T ss_dssp TCEEEE-EEEGGGTEEEEEEHHHHHHHHHHTCCEE-------EE---CCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHH
T ss_pred CCceee-hhhcCchhhcCCcHHHHHHHHHcCCeEE-------EE---eCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHH
Confidence 321100 0000000011122222 22222110000 00 011222222222222 889999999999999
Q ss_pred CCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeec
Q psy13765 203 TGL----DSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 203 sgL----D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
+|+ |+..+.++.+.++++++ +|.|+|+++||++ ++.++||++++|.
T Consensus 152 ~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~ 202 (207)
T 1znw_A 152 IGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGT 202 (207)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC--
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhc
Confidence 998 78899999999999975 5899999999986 5789999999985
No 75
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.84 E-value=2.1e-21 Score=205.81 Aligned_cols=87 Identities=15% Similarity=0.179 Sum_probs=77.9
Q ss_pred cCCCCC-CCCchhhhHHHHHHhhh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q psy13765 168 LDEPTT-SNPNDQKKRLSIALELI---------NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT 237 (606)
Q Consensus 168 ~de~~~-~~s~g~~krl~IA~aL~---------~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~ 237 (606)
-|.|.. .+|+|||||+.||++|+ .+|+||+|||||++||+..+..+++.++++. .|+|+++|. +.
T Consensus 258 ~~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~- 332 (359)
T 2o5v_A 258 GDFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP- 332 (359)
T ss_dssp TTEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT-
T ss_pred CCcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc-
Confidence 355666 69999999999999999 8999999999999999999999999998764 699999994 42
Q ss_pred HHhhcceeeeecCCcEEEEcChhHH
Q psy13765 238 LFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 238 i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
.+|+++++++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998875
No 76
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.84 E-value=3.8e-22 Score=207.07 Aligned_cols=161 Identities=16% Similarity=0.168 Sum_probs=114.9
Q ss_pred ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-------hhh--cccEEEEccCCC-CCC
Q psy13765 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-------NAF--RRVSCYIQQDDR-LQP 121 (606)
Q Consensus 52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-------~~~--~~~~~yv~Q~~~-l~~ 121 (606)
++++|+++++|++++|+||||||||||++.|+|+..+ .+|+|.++|.+... ..+ +..++|++|++. ++|
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 4678999999999999999999999999999998765 48999999986532 122 346999999998 888
Q ss_pred CCcHHHHHHHc-------------CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHh
Q psy13765 122 LLTIENVMSLL-------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE 188 (606)
Q Consensus 122 ~ltv~~~l~~~-------------gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~a 188 (606)
.+|+.+.+... |+.+..++.+.+|| |||+.||+|
T Consensus 169 ~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---------------------------------kqr~~iara 215 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---------------------------------ACKKAVGKI 215 (302)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---------------------------------HHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---------------------------------HHHHHHHHh
Confidence 88886665431 11111112222233 556667777
Q ss_pred hhcCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc--------hHHHhhcceeeeecCCcE
Q psy13765 189 LINNPR--VMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPS--------ATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 189 L~~~P~--lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~--------~~i~~~~D~v~~L~~G~~ 253 (606)
|+.+|+ +|+|| ||+|||+... ++++.+ .|.|+|++||... ..+....+.|.++..|+.
T Consensus 216 l~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 216 VSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp STTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred hccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 777799 99999 9999999854 345554 5899999999432 123345567777777754
No 77
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.84 E-value=5e-21 Score=201.82 Aligned_cols=79 Identities=25% Similarity=0.348 Sum_probs=69.9
Q ss_pred CCCCCCCCchhhh------HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q psy13765 169 DEPTTSNPNDQKK------RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF 242 (606)
Q Consensus 169 de~~~~~s~g~~k------rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 242 (606)
|.+...+|||||| |+.+|++|+.+|++|+|||||+|||+..+..+.+.|+++.++|.|||++||++. +.+.|
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~ 320 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAA 320 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGC
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhC
Confidence 4566777788877 677889999999999999999999999999999999999878899999999953 57899
Q ss_pred ceeeeec
Q psy13765 243 DQVYLLS 249 (606)
Q Consensus 243 D~v~~L~ 249 (606)
|+++.|+
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999995
No 78
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.83 E-value=3.3e-23 Score=225.36 Aligned_cols=184 Identities=13% Similarity=0.113 Sum_probs=139.4
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc---cCC-
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---SRN- 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~---~~~- 102 (606)
..++++|+++.+. .++.+|+++ +++.+||+++|+||||||||||+++|+|+.++ ..|.|.++|+ +..
T Consensus 130 ~~l~~~~v~~~~~-------tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~-~~G~i~~~G~r~~ev~~ 200 (438)
T 2dpy_A 130 NPLQRTPIEHVLD-------TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA-DVIVVGLIGERGREVKD 200 (438)
T ss_dssp CTTTSCCCCSBCC-------CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC-SEEEEEEESCCHHHHHH
T ss_pred CceEEeccceecC-------CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEeceecHHHHH
Confidence 3477888887652 135799999 99999999999999999999999999999876 5899999997 322
Q ss_pred -------hhhhcccEEEEccC-CCCCCCCcHHHHHHH----cCCc--c---ccCCccccCChHHHHHHHHHHHHhcCCcc
Q psy13765 103 -------INAFRRVSCYIQQD-DRLQPLLTIENVMSL----LGLD--E---SQNTRSSQLSGGQKKRLSIALELINNPRV 165 (606)
Q Consensus 103 -------~~~~~~~~~yv~Q~-~~l~~~ltv~~~l~~----~gl~--~---~~~~~~~~lSgGqrqRv~ia~~L~~~~~~ 165 (606)
...+++.++||+|+ +..++.+++.+.+.. ++-. + ..+ .+..+|+|| ||+++| +
T Consensus 201 ~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld-~l~~lS~g~-qrvslA---l----- 270 (438)
T 2dpy_A 201 FIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMD-SLTRYAMAQ-REIALA---I----- 270 (438)
T ss_dssp HHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEE-CHHHHHHHH-HHHHHH---T-----
T ss_pred HHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-hHHHHHHHH-HHHHHH---h-----
Confidence 12356789999995 455566666443321 1100 0 011 133466776 666655 3
Q ss_pred cccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCch
Q psy13765 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ---Q-GR-----TIICTIHQPSA 236 (606)
Q Consensus 166 ~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~---~-g~-----tii~~~H~~~~ 236 (606)
.+|++ |+|||+.+...+.++++++.+ + |. ||++++||++
T Consensus 271 -------------------------~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~- 318 (438)
T 2dpy_A 271 -------------------------GEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ- 318 (438)
T ss_dssp -------------------------TCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-
T ss_pred -------------------------CCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-
Confidence 34777 999999999999999999876 3 74 9999999987
Q ss_pred HHHhhcceeeeecCCcEEEEcChhHHH
Q psy13765 237 TLFQMFDQVYLLSGGQCLYQGATDQLV 263 (606)
Q Consensus 237 ~i~~~~D~v~~L~~G~~~~~G~~~~~~ 263 (606)
...+|++++|.+|+++..|+++++.
T Consensus 319 --~~iad~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 319 --DPIADSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp --CHHHHHHHHHSSEEEEECHHHHHTT
T ss_pred --chhhceEEEEeCcEEEEeCCHHHcc
Confidence 3679999999999999999887653
No 79
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.83 E-value=1.5e-23 Score=207.57 Aligned_cols=180 Identities=14% Similarity=0.079 Sum_probs=114.0
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh----hhhcccEEEEccCCCCCCCCc
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----NAFRRVSCYIQQDDRLQPLLT 124 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~~~yv~Q~~~l~~~lt 124 (606)
..-|+|||+++++|++++|+||||||||||+++|+|+. + |+|.+ |.+... ...++.++|++|++.+++.++
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p---G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P---NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T---TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C---CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 45799999999999999999999999999999999986 3 88999 754311 223567899999887665332
Q ss_pred H-HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH-----HHhhhcCCcEEEE
Q psy13765 125 I-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI-----ALELINNPRVMFL 198 (606)
Q Consensus 125 v-~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I-----A~aL~~~P~lllL 198 (606)
. ++.++ .....+. ..+.+ +.+ ..+++..+.+.++| ..+|||||||+.| |++|+.+|++++|
T Consensus 85 ~~~~~l~---~~~~~~~-~~g~~---~~~---i~~~l~~~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 85 KNEDFLE---YDNYANN-FYGTL---KSE---YDKAKEQNKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp HTTCEEE---EEEETTE-EEEEE---HHH---HHHHHHTTCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred hccchhh---hhhcccc-cCCCc---HHH---HHHHHhCCCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 1 00000 0000011 00111 122 23344455655665 5789999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-------CCCEEEEEecCCchHHHhhcceeee
Q psy13765 199 DEPTTGLDSQSCSQCIKLLKMISQ-------QGRTIICTIHQPSATLFQMFDQVYL 247 (606)
Q Consensus 199 DEPTsgLD~~~~~~i~~~l~~l~~-------~g~tii~~~H~~~~~i~~~~D~v~~ 247 (606)
||||+++|..+...+.+.++++.+ .+.+.|+++|++. +.++.+|+++.
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii~ 206 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYLL 206 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHHH
Confidence 999999999999999998887654 2345566666644 34455555543
No 80
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.82 E-value=1.2e-20 Score=209.70 Aligned_cols=79 Identities=13% Similarity=0.243 Sum_probs=72.0
Q ss_pred CCCCCC-CchhhhHHHHHHhhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee
Q psy13765 170 EPTTSN-PNDQKKRLSIALELINNP--RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY 246 (606)
Q Consensus 170 e~~~~~-s~g~~krl~IA~aL~~~P--~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~ 246 (606)
.|...+ ||||||||.||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |.|||++||++. +...||+++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~ 468 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHY 468 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEE
Confidence 456677 999999999999999999 99999999999999999999999999987 899999999975 346799999
Q ss_pred eecCC
Q psy13765 247 LLSGG 251 (606)
Q Consensus 247 ~L~~G 251 (606)
+|.+|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99654
No 81
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.82 E-value=1.1e-22 Score=226.52 Aligned_cols=167 Identities=14% Similarity=0.065 Sum_probs=117.4
Q ss_pred cccccceeeeE-EEeCCeEEEEECCCCCCHHHHHHH--HhCCCCCCCccEEEECCccCCh--hhhcccEEEEccCCCCCC
Q psy13765 47 EPKDVLKNLCG-RFPSNQLIAIMGPSGAGKSSLLDV--LSGYRSNGVTGQILTNGHSRNI--NAFRRVSCYIQQDDRLQP 121 (606)
Q Consensus 47 ~~~~iL~~vs~-~i~~Ge~~aIiGpsGaGKSTLL~~--L~g~~~~~~~G~I~~~G~~~~~--~~~~~~~~yv~Q~~~l~~ 121 (606)
...++|++||+ .+++||+++|+||||||||||+++ ++|+.+++ +|.|+++|++... ...++.+||++|++...+
T Consensus 23 ~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~-~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 23 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD-EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC-CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 34679999999 999999999999999999999999 78987653 8999999987422 233467899999865322
Q ss_pred CCcHHHHHHHcCCcc--ccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhh-hcCCcEEEE
Q psy13765 122 LLTIENVMSLLGLDE--SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL-INNPRVMFL 198 (606)
Q Consensus 122 ~ltv~~~l~~~gl~~--~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL-~~~P~lllL 198 (606)
.+. .+.... ........+.-++ +.-. +..+| ..+|+++++
T Consensus 102 ~l~------~~~~~~~~~~~~~l~~~~l~~-~~~~------------------------------~~~~LS~g~~~~lil 144 (525)
T 1tf7_A 102 KLF------ILDASPDPEGQEVVGGFDLSA-LIER------------------------------INYAIQKYRARRVSI 144 (525)
T ss_dssp SEE------EEECCCCSSCCSCCSSHHHHH-HHHH------------------------------HHHHHHHHTCSEEEE
T ss_pred cEE------EEecCcccchhhhhcccCHHH-HHHH------------------------------HHHHHHHcCCCEEEE
Confidence 110 000000 0001111111111 1111 22222 134899999
Q ss_pred eCCCC-----CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH--------HHhhcceeeeecCC
Q psy13765 199 DEPTT-----GLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT--------LFQMFDQVYLLSGG 251 (606)
Q Consensus 199 DEPTs-----gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~--------i~~~~D~v~~L~~G 251 (606)
||||+ +||+..+..+.+++++++++|+|||+++|++... ...+||+|++|++|
T Consensus 145 De~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 145 DSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp ECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred CCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 99998 4699999999999999988899999999998752 34569999999883
No 82
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.81 E-value=3.5e-21 Score=203.97 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=114.8
Q ss_pred eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-------hhh--cccEEEEccCCC-CCCC
Q psy13765 53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-------NAF--RRVSCYIQQDDR-LQPL 122 (606)
Q Consensus 53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-------~~~--~~~~~yv~Q~~~-l~~~ 122 (606)
+++|+++++|++++|+||||||||||++.|+|+..+ .+|+|.++|.+... ..+ +..++|++|++. +.|.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc-cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 468899999999999999999999999999998765 48999999986532 122 356999999988 8888
Q ss_pred CcHHHHHHHc-------------CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhh
Q psy13765 123 LTIENVMSLL-------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189 (606)
Q Consensus 123 ltv~~~l~~~-------------gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL 189 (606)
.++.+.+... |+.+..+..+.+|| |||+.||++|
T Consensus 227 ~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---------------------------------kqr~~iaral 273 (359)
T 2og2_A 227 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---------------------------------ACKKAVGKIV 273 (359)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---------------------------------HHHHHHHHHS
T ss_pred hhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---------------------------------HHHHHHHHHH
Confidence 8886665431 22222222222333 4555566666
Q ss_pred hcCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc--------hHHHhhcceeeeecCCcE
Q psy13765 190 INNPR--VMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPS--------ATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 190 ~~~P~--lllLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~--------~~i~~~~D~v~~L~~G~~ 253 (606)
+.+|+ +|+|| ||+|||+.+. ++++.+ .|.|+|++||... +.+....+.|.++..|+.
T Consensus 274 ~~~P~e~lLvLD-pttglD~~~~------~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 274 SGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp TTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred hcCCCceEEEEc-CCCCCCHHHH------HHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 66799 99999 9999999865 345554 4899999999422 123345567777777753
No 83
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.81 E-value=5.9e-22 Score=209.38 Aligned_cols=183 Identities=16% Similarity=0.188 Sum_probs=132.1
Q ss_pred eEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC----
Q psy13765 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---- 102 (606)
Q Consensus 27 ~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---- 102 (606)
..++.+|+++.+.. +..+|+++ ++|.+||+++|+||||||||||+++|+|...+ ..|.|.+.|++..
T Consensus 44 ~~i~~~~l~~~~~t-------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~-~~g~i~~~G~~~~ev~~ 114 (347)
T 2obl_A 44 DPLLRQVIDQPFIL-------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA-DIIVLALIGERGREVNE 114 (347)
T ss_dssp CSTTCCCCCSEECC-------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC-SEEEEEEESCCHHHHHH
T ss_pred CCeeecccceecCC-------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC-CEEEEEEecccHHHHHH
Confidence 35778888887632 35799999 99999999999999999999999999999876 4899999886411
Q ss_pred ------hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccc-cC---------CccccCChHHHHHHHHHHHHhcCCccc
Q psy13765 103 ------INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDES-QN---------TRSSQLSGGQKKRLSIALELINNPRVM 166 (606)
Q Consensus 103 ------~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~-~~---------~~~~~lSgGqrqRv~ia~~L~~~~~~~ 166 (606)
...+++.+.+++|.+.-. ...+......+++.+. .+ ..+..+|+|| ||+++| +
T Consensus 115 ~i~~~~~~~~~~~v~~~~~~~~~~-~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l------ 183 (347)
T 2obl_A 115 FLALLPQSTLSKCVLVVTTSDRPA-LERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---S------ 183 (347)
T ss_dssp HHTTSCHHHHTTEEEEEECTTSCH-HHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---T------
T ss_pred HHHhhhhhhhhceEEEEECCCCCH-HHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---c------
Confidence 112345677887754311 0111111111111111 11 2344566666 566654 2
Q ss_pred ccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCchHHH
Q psy13765 167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ--QGR-----TIICTIHQPSATLF 239 (606)
Q Consensus 167 ~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~--~g~-----tii~~~H~~~~~i~ 239 (606)
.+|++ |+|||+....++.++++++.+ +|. ||++++||.+.
T Consensus 184 ------------------------~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~--- 230 (347)
T 2obl_A 184 ------------------------GEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND--- 230 (347)
T ss_dssp ------------------------TCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCC---
T ss_pred ------------------------CCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCC---
Confidence 34666 999999999999999999974 487 99999999883
Q ss_pred hhcceeeeecCCcEEEEcChhHH
Q psy13765 240 QMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 240 ~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
.+||+++++.+|+++..|++++.
T Consensus 231 ~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 231 PIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHHHHHHCSEEEEBCHHHHTT
T ss_pred hhhhheEEeeCcEEEEeCCHHHc
Confidence 67999999999999999988765
No 84
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.81 E-value=4.2e-22 Score=203.64 Aligned_cols=148 Identities=16% Similarity=0.169 Sum_probs=90.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccc
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSS 143 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~ 143 (606)
.++|+||||||||||+|+|+|...+ .+|+|.++|++......++.++|++|++.+++.+||.+.+ ++....+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~-~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~---~~g~~~~~--- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS-RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTP---GFGDQINN--- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCC---C--CCSBC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEech---hhhhhccc---
Confidence 4799999999999999999998776 5899999998765445567899999999999988875433 22111110
Q ss_pred cCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy13765 144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ 223 (606)
Q Consensus 144 ~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~ 223 (606)
.-+- +++. ..+..+ ..+.+...+|+|||||+.||||++. ++++||||.|||+.. .+.++++++.
T Consensus 77 ~~~~---~~i~--~~~~~~----~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~ 140 (270)
T 3sop_A 77 ENCW---EPIE--KYINEQ----YEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV 140 (270)
T ss_dssp TTCS---HHHH--HHHHHH----HHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT
T ss_pred HHHH---HHHH--HHHHHH----HHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc
Confidence 0000 1110 000000 1122334589999999999999875 999999999999987 5666667666
Q ss_pred CCEEEEEecCCc
Q psy13765 224 GRTIICTIHQPS 235 (606)
Q Consensus 224 g~tii~~~H~~~ 235 (606)
++||+++|..+
T Consensus 141 -~~vI~Vi~K~D 151 (270)
T 3sop_A 141 -VNIIPVIAKAD 151 (270)
T ss_dssp -SEEEEEETTGG
T ss_pred -CcEEEEEeccc
Confidence 89999998743
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.80 E-value=1.1e-20 Score=194.98 Aligned_cols=185 Identities=16% Similarity=0.154 Sum_probs=121.5
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcc-EEEECCccCChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG-QILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN 127 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G-~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~ 127 (606)
..+|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.+.+.+.+..++++++..+.|+..+ +..+
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~----~~~~ 96 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLEESVEETAEDLIGLHNRVRL----RQSD 96 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEESSSCHHHHHHHHHHHHTTCCG----GGCH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeCcCCHHHHHHHHHHHHcCCCh----hhcc
Confidence 46899999999999999999999999999999999986542 46 675544444434444433333333221 1100
Q ss_pred HHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchh-hhHHHHHHhhhcCCcEEEEeCCCC---
Q psy13765 128 VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQ-KKRLSIALELINNPRVMFLDEPTT--- 203 (606)
Q Consensus 128 ~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~-~krl~IA~aL~~~P~lllLDEPTs--- 203 (606)
.+.. +.++..+.++ .+.+++....+.+.|. ....+.+| ++|+. |+++..+|+++++||||+
T Consensus 97 ~l~~-----------~~~~~~~~~~--~~~~~l~~~~l~i~~~-~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKR-----------EIIENGKFDQ--WFDELFGNDTFHLYDS-FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHH-----------HHHHHTHHHH--HHHHHHSSSCEEEECC-CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred cccc-----------CCCCHHHHHH--HHHHHhccCCEEEECC-CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 1110 1122223332 2334444434444333 35677777 66666 888999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCCc-h--------------------HHHhhcceeeeecCCcE
Q psy13765 204 G---LDS-QSCSQCIKLLKMISQQ-GRTIICTIHQPS-A--------------------TLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 204 g---LD~-~~~~~i~~~l~~l~~~-g~tii~~~H~~~-~--------------------~i~~~~D~v~~L~~G~~ 253 (606)
+ +|. ....++++.|++++++ |+|||+++|+.. . .+...||+|++|++|+.
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 6678899999999875 999999999951 2 57789999999998864
No 86
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.80 E-value=1.1e-20 Score=223.91 Aligned_cols=172 Identities=15% Similarity=0.145 Sum_probs=114.4
Q ss_pred EEEEEe-----eEEEEecCCcccccccccceeeeEEEeC-------CeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEE
Q psy13765 28 EIKFKD-----LTYTVSTGLGFKQEPKDVLKNLCGRFPS-------NQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQIL 95 (606)
Q Consensus 28 ~l~~~n-----l~~~~~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~ 95 (606)
.|+++| |++.+. +++.+++|+++.+++ |++++|+||||||||||||++ |+...
T Consensus 750 ~l~i~~~rHP~l~~~~~-------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------- 814 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF-------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------- 814 (1022)
T ss_dssp CEEEEEECCCC-------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------
T ss_pred eEEEEeccccEEEEEec-------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------
Confidence 588999 887752 345799999999987 999999999999999999999 87531
Q ss_pred ECCccCChhhhcccEE-EEccCCCCCCCCcH-HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCC
Q psy13765 96 TNGHSRNINAFRRVSC-YIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173 (606)
Q Consensus 96 ~~G~~~~~~~~~~~~~-yv~Q~~~l~~~ltv-~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~ 173 (606)
..++| ||||+.. .+++ ++++..+|+.+........+|+++++ ++
T Consensus 815 -----------~aqiG~~Vpq~~~---~l~v~d~I~~rig~~d~~~~~~stf~~em~~-~a------------------- 860 (1022)
T 2o8b_B 815 -----------MAQMGCYVPAEVC---RLTPIDRVFTRLGASDRIMSGESTFFVELSE-TA------------------- 860 (1022)
T ss_dssp -----------HHTTTCCEESSEE---EECCCSBEEEECC---------CHHHHHHHH-HH-------------------
T ss_pred -----------HhheeEEeccCcC---CCCHHHHHHHHcCCHHHHhhchhhhHHHHHH-HH-------------------
Confidence 12344 8998753 2232 33333445544444334455555543 55
Q ss_pred CCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSC-SQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGG 251 (606)
Q Consensus 174 ~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~-~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G 251 (606)
+|++++++|+++||||||+|+|+... ..+..+|+.++++ |.++|++||+.+ .+...+|++.++ +|
T Consensus 861 -----------~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g 927 (1022)
T 2o8b_B 861 -----------SILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LG 927 (1022)
T ss_dssp -----------HHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EE
T ss_pred -----------HHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cC
Confidence 45555555999999999999999985 5578999999876 999999999976 466789999887 58
Q ss_pred cEE--EEcChhH
Q psy13765 252 QCL--YQGATDQ 261 (606)
Q Consensus 252 ~~~--~~G~~~~ 261 (606)
++. +.|++++
T Consensus 928 ~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 928 HMACMVENECED 939 (1022)
T ss_dssp EEEEC-------
T ss_pred eEEEEEecCccc
Confidence 887 5565543
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=2.7e-20 Score=207.36 Aligned_cols=154 Identities=15% Similarity=0.088 Sum_probs=111.0
Q ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccE--EEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcC
Q psy13765 56 CGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQ--ILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLG 133 (606)
Q Consensus 56 s~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~--I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~g 133 (606)
++.+++|++++|+||||||||||+++++|...+ .|+ +.+.+++.. ..+.+.. . . ....++++ ...|
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~--~G~~vi~~~~ee~~-~~l~~~~----~--~--~g~~~~~~-~~~g 342 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA--NKERAILFAYEESR-AQLLRNA----Y--S--WGMDFEEM-ERQN 342 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT--TTCCEEEEESSSCH-HHHHHHH----H--T--TSCCHHHH-HHTT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEEEeCCH-HHHHHHH----H--H--cCCCHHHH-HhCC
Confidence 458999999999999999999999999998654 354 344443221 1111110 0 0 01223342 2345
Q ss_pred CccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHH-----
Q psy13765 134 LDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQ----- 208 (606)
Q Consensus 134 l~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~----- 208 (606)
+....+..+..|||||+||+.+|+++..+ |+++++| ||+|||..
T Consensus 343 ~~~~~~~~p~~LS~g~~q~~~~a~~l~~~------------------------------p~llilD-p~~~Ld~~~~~~~ 391 (525)
T 1tf7_A 343 LLKIVCAYPESAGLEDHLQIIKSEINDFK------------------------------PARIAID-SLSALARGVSNNA 391 (525)
T ss_dssp SEEECCCCGGGSCHHHHHHHHHHHHHTTC------------------------------CSEEEEE-CHHHHTSSSCHHH
T ss_pred CEEEEEeccccCCHHHHHHHHHHHHHhhC------------------------------CCEEEEc-ChHHHHhhCChHH
Confidence 55556666666777777777655555544 9999999 99999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCc---------hHHHhhcceeeeecCCc
Q psy13765 209 SCSQCIKLLKMISQQGRTIICTIHQPS---------ATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 209 ~~~~i~~~l~~l~~~g~tii~~~H~~~---------~~i~~~~D~v~~L~~G~ 252 (606)
.+..+.++++.++++|.|||+++|+.. ..+..+||++++|++|+
T Consensus 392 ~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 392 FRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999999999888999999999971 34567899999998876
No 88
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.79 E-value=2.9e-20 Score=217.87 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=109.3
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHH--------hCCCCCCCccEEEECCccCChhhhcccEEEEccCCC
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVL--------SGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDR 118 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L--------~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~ 118 (606)
+.+.+++|+++++++|++++|+||||||||||||++ .|..-|. .+. .++.+ +
T Consensus 647 ~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa-~~~---------------~~~~~---d- 706 (934)
T 3thx_A 647 EIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC-ESA---------------EVSIV---D- 706 (934)
T ss_dssp -CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE-EEE---------------EEECC---S-
T ss_pred CceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc-ccc---------------cchHH---H-
Confidence 346799999999999999999999999999999999 4432221 111 01110 0
Q ss_pred CCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEE
Q psy13765 119 LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFL 198 (606)
Q Consensus 119 l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllL 198 (606)
+++..+|+. +....++|++++++..+|+++ ++ +++|+++||
T Consensus 707 --------~i~~~ig~~---d~l~~~lStf~~e~~~~a~il---------------------------~~-a~~~sLlLL 747 (934)
T 3thx_A 707 --------CILARVGAG---DSQLKGVSTFMAEMLETASIL---------------------------RS-ATKDSLIII 747 (934)
T ss_dssp --------EEEEECC------------CHHHHHHHHHHHHH---------------------------HH-CCTTCEEEE
T ss_pred --------HHHHhcCch---hhHHHhHhhhHHHHHHHHHHH---------------------------Hh-ccCCcEEEE
Confidence 111122322 223345777777777655544 11 445999999
Q ss_pred eCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 199 DEPTTGLDSQSCSQC-IKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 199 DEPTsgLD~~~~~~i-~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
||||+|+|+.....+ ..+++.+++ .|.|+|++||+.+ +.+++|++..+.+|++...++.+++
T Consensus 748 DEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp ESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEeeEEEEEecCCcE
Confidence 999999999999888 677788876 4999999999954 5689999999999999998877654
No 89
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.77 E-value=2.6e-22 Score=209.21 Aligned_cols=159 Identities=11% Similarity=0.055 Sum_probs=106.1
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCcccc
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQ 138 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~ 138 (606)
+++|++++|+||||||||||+++|+|+..+ ..|. +.+++|+|++.+++. |+.+.+ ++....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~-~~G~--------------~~v~~v~qd~~~~~~-t~~e~~---~~~~~~ 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR-WDHH--------------PRVDLVTTDGFLYPN-AELQRR---NLMHRK 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT-STTC--------------CCEEEEEGGGGBCCH-HHHHHT---TCTTCT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc-cCCC--------------CeEEEEecCccCCcc-cHHHHH---HHHHhc
Confidence 899999999999999999999999998765 2332 468999999998887 765433 321111
Q ss_pred CCccccCChH-HHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHH
Q psy13765 139 NTRSSQLSGG-QKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL 217 (606)
Q Consensus 139 ~~~~~~lSgG-qrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l 217 (606)
+.... ..+++.-..+.+... ..+.+...+|+||+||+.+|++++.+|+|||+|||+..+|+..
T Consensus 148 -----g~~~~~d~~~~~~~L~~l~~~---~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-------- 211 (312)
T 3aez_A 148 -----GFPESYNRRALMRFVTSVKSG---SDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-------- 211 (312)
T ss_dssp -----TSGGGBCHHHHHHHHHHHHTT---CSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------
T ss_pred -----CCChHHHHHHHHHHHHHhCCC---cccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------
Confidence 11111 122222122222221 1234556799999999999999999999999999999998621
Q ss_pred HHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 218 ~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
..+.+.=-.+|++.|+.+....+..+|.+.+.+|+
T Consensus 212 ~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 212 LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 11222212346666665555556777877776664
No 90
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.77 E-value=6.1e-19 Score=164.10 Aligned_cols=89 Identities=27% Similarity=0.400 Sum_probs=78.6
Q ss_pred cCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHH
Q psy13765 138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL 217 (606)
Q Consensus 138 ~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l 217 (606)
.++++.+||||||||+++|.+| +||++|+.+|++++|||||+|||+.++..+.+.+
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~L------------------------alaral~~~p~lllLDEPt~~LD~~~~~~l~~~l 106 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRL------------------------AMSLYLAGEISLLILDEPTPYLDEERRRKLITIM 106 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHH------------------------HHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHH
T ss_pred ccCChhHCCHHHHHHHHHHhhh------------------------HHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 4567889999999999988654 3788999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCchHHHhhcceeeeec--CCc
Q psy13765 218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLS--GGQ 252 (606)
Q Consensus 218 ~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~--~G~ 252 (606)
++++++|+|||++||++. +.+.||++++|+ +|.
T Consensus 107 ~~~~~~~~tiiivsH~~~--~~~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 107 ERYLKKIPQVILVSHDEE--LKDAADHVIRISLENGS 141 (148)
T ss_dssp HHTGGGSSEEEEEESCGG--GGGGCSEEEEEEEETTE
T ss_pred HHHHccCCEEEEEEChHH--HHHhCCEEEEEEcCCCe
Confidence 999877999999999973 568999999994 554
No 91
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.77 E-value=5.2e-20 Score=183.58 Aligned_cols=168 Identities=16% Similarity=0.177 Sum_probs=101.9
Q ss_pred cceeee-EEEeCCeEEEEECCCCCCHHHHHHHHh--CCCCCCCccEEEECCccCCh--hhhcccEEEEccCCCCCCCCcH
Q psy13765 51 VLKNLC-GRFPSNQLIAIMGPSGAGKSSLLDVLS--GYRSNGVTGQILTNGHSRNI--NAFRRVSCYIQQDDRLQPLLTI 125 (606)
Q Consensus 51 iL~~vs-~~i~~Ge~~aIiGpsGaGKSTLL~~L~--g~~~~~~~G~I~~~G~~~~~--~~~~~~~~yv~Q~~~l~~~ltv 125 (606)
.|+++- +.+++|++++|+||||||||||+++|+ |...++ .|.+.+++..... ....+.+++++|+....+.+++
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG-EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAI 96 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC-CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEE
Confidence 344432 379999999999999999999999999 652332 5777777754321 2223456777776544443333
Q ss_pred HHHHHHc-CCcc-ccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCC
Q psy13765 126 ENVMSLL-GLDE-SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203 (606)
Q Consensus 126 ~~~l~~~-gl~~-~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTs 203 (606)
.+..... +... .........+.++..+.. .+..-..+|+++++||||+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~l~~~~p~~lilDep~~ 146 (251)
T 2ehv_A 97 VDGVSSVVGLPSEEKFVLEDRFNVDNFLRYI------------------------------YRVVKAINAKRLVIDSIPS 146 (251)
T ss_dssp EC-------------------CCHHHHHHHH------------------------------HHHHHHTTCSEEEEECHHH
T ss_pred EEccccccccccccceeccCcccHHHHHHHH------------------------------HHHHHhhCCCEEEEccHHH
Confidence 2111100 0000 000000111122221111 1112235699999999999
Q ss_pred CCC-----HHHHHHHHHHHHHHHhCCCEEEEEecCCchHH--------Hhhc-ceeeeec
Q psy13765 204 GLD-----SQSCSQCIKLLKMISQQGRTIICTIHQPSATL--------FQMF-DQVYLLS 249 (606)
Q Consensus 204 gLD-----~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i--------~~~~-D~v~~L~ 249 (606)
+|| +..+..+.++++.++++|+|||+++|+..... ..+| |++++|+
T Consensus 147 ~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 147 IALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 997 66677799999999888999999999977421 4788 9999995
No 92
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.76 E-value=1.7e-19 Score=210.61 Aligned_cols=107 Identities=28% Similarity=0.509 Sum_probs=84.4
Q ss_pred HHHHcCCccc-cCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCC
Q psy13765 128 VMSLLGLDES-QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206 (606)
Q Consensus 128 ~l~~~gl~~~-~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD 206 (606)
.+..+||.+. .++.+.+|||||||||+||++|..+|+ |++|+|||||+|||
T Consensus 447 ~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~----------------------------~~lllLDEPT~gLD 498 (916)
T 3pih_A 447 FLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLT----------------------------GVIYVLDEPTIGLH 498 (916)
T ss_dssp HHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCC----------------------------SCEEEEECTTTTCC
T ss_pred HHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCC----------------------------CcEEEEECCccCCC
Confidence 3444566543 455666666666666665555555422 44999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeee------cCCcEEEEcChhHHHH
Q psy13765 207 SQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL------SGGQCLYQGATDQLVN 264 (606)
Q Consensus 207 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~~~~~G~~~~~~~ 264 (606)
+.....++++|++++++|.|||+++||+. .+ ..||++++| ++|++++.|+++++.+
T Consensus 499 ~~~~~~l~~~L~~L~~~G~TvivVtHd~~-~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 499 PRDTERLIKTLKKLRDLGNTVIVVEHDEE-VI-RNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp GGGHHHHHHHHHHTTTTTCEEEEECCCHH-HH-HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 99999999999999888999999999975 34 569999999 8999999999998764
No 93
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.76 E-value=1.7e-19 Score=183.33 Aligned_cols=133 Identities=20% Similarity=0.383 Sum_probs=96.1
Q ss_pred ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM 129 (606)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l 129 (606)
++|+++| +++|++++|+||||||||||+++|+|+.++..+|+|.++|.+... ..+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~-~~~~~~~~v~q~------------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY-VFKHKKSIVNQR------------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCS-CCCCSSSEEEEE-------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCccee-ecCCcceeeeHH-------------
Confidence 4899999 999999999999999999999999998765227999999876431 112223344442
Q ss_pred HHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHH
Q psy13765 130 SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS 209 (606)
Q Consensus 130 ~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~ 209 (606)
.+|++. ..+ |++ ||++|..+|+++++|||| |+.+
T Consensus 79 -~~gl~~------~~l------~~~------------------------------la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 79 -EVGEDT------KSF------ADA------------------------------LRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp -EBTTTB------SCH------HHH------------------------------HHHHHHHCCSEEEESCCC---SHHH
T ss_pred -HhCCCH------HHH------HHH------------------------------HHHHHhhCCCEEEeCCCC---CHHH
Confidence 122221 111 455 455555559999999999 9888
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 210 CSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 210 ~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
...++ +. ++.|.+|++++|+.+ ....+||++.|..
T Consensus 113 ~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 113 VETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 66543 33 356999999999976 4588999998864
No 94
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.75 E-value=9e-20 Score=213.23 Aligned_cols=155 Identities=14% Similarity=0.132 Sum_probs=103.3
Q ss_pred ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765 48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN 127 (606)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~ 127 (606)
++.+++|+|+++++|++++|+||||||||||||++++.......|. ..... ...++.+ +.++
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~------~vpa~--~~~i~~~---d~i~------- 720 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS------YVPAE--EATIGIV---DGIF------- 720 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC------CBSSS--EEEEECC---SEEE-------
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc------cccch--hhhhhHH---HHHH-------
Confidence 5689999999999999999999999999999999986421100110 00000 0111111 1122
Q ss_pred HHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCH
Q psy13765 128 VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207 (606)
Q Consensus 128 ~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~ 207 (606)
..+|+.+........+|+|++|++.++++ +. +|+++||||||+|||+
T Consensus 721 --~~ig~~d~l~~~~stfs~em~~~~~il~~-a~------------------------------~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 721 --TRMGAADNIYKGRSTFMEELTDTAEIIRK-AT------------------------------SQSLVILDELGRGTST 767 (918)
T ss_dssp --EEC----------CCHHHHHHHHHHHHHH-CC------------------------------TTCEEEEESTTTTSCH
T ss_pred --HhCChHHHHHHhHHHhhHHHHHHHHHHHh-cc------------------------------CCCEEEEeCCCCCCCH
Confidence 22344444445566788999988886655 33 4999999999999999
Q ss_pred HHHHHHH-HHHHHHHh-CCCEEEEEecCCchHHHhhcceeee-ecCCcEEE
Q psy13765 208 QSCSQCI-KLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYL-LSGGQCLY 255 (606)
Q Consensus 208 ~~~~~i~-~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~-L~~G~~~~ 255 (606)
.....+. .+++.+++ .|.|+|++||+++ +.+++|+.-- +.++++.+
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhcccceEEEEEEE
Confidence 9999997 77888876 5999999999965 4577887642 55555544
No 95
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.75 E-value=4.1e-19 Score=178.39 Aligned_cols=177 Identities=14% Similarity=0.125 Sum_probs=105.6
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHH
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIE 126 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~ 126 (606)
+++.+|+|+||++++|+++||+||||||||||+++|+|+. |.+.++ ..++.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-----G~~~~~-------~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-----GQNEVE-------QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-----TGGGSC-------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-----chhccc-------ccCCceEEEeCCc-CccccCHh
Confidence 5678999999999999999999999999999999999964 333333 3467799999995 67788987
Q ss_pred HHHHHc-CCccccCCccccCChHHHHHH-HHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCC
Q psy13765 127 NVMSLL-GLDESQNTRSSQLSGGQKKRL-SIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTG 204 (606)
Q Consensus 127 ~~l~~~-gl~~~~~~~~~~lSgGqrqRv-~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsg 204 (606)
+.+... +.....+ ..... .+++ .....+ .++ .+.+...+|+||+||+.+ ++++.+|+++++|||...
T Consensus 77 ~~~~~~~~~~~~~~--~~~~~---~~~~~~~L~~l-~~~----~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~ 145 (245)
T 2jeo_A 77 QKAKALKGQYNFDH--PDAFD---NDLMHRTLKNI-VEG----KTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVF 145 (245)
T ss_dssp HHHHHHTTCCCTTS--GGGBC---HHHHHHHHHHH-HTT----CCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTT
T ss_pred HhhhhhccCCCCCC--ccccc---HHHHHHHHHHH-HCC----CCeecccccccccCccCc-eEEecCCCEEEEeCcccc
Confidence 765432 2111111 01111 1111 111223 222 345667899999999988 688999999999999888
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHH
Q psy13765 205 LDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNY 265 (606)
Q Consensus 205 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~ 265 (606)
.|.. +.++ .+.+|++++|+.......+++++ ++|+ +.+++.+.
T Consensus 146 ~~~~--------l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 146 YSQE--------IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp TSHH--------HHTT--CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHH
T ss_pred ccHH--------HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 8763 2222 37899999997432222334444 6664 56666543
No 96
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.73 E-value=4e-19 Score=174.72 Aligned_cols=167 Identities=13% Similarity=0.039 Sum_probs=106.8
Q ss_pred cccceeeeE-EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcc---cEEEEccCCCCCCCCc
Q psy13765 49 KDVLKNLCG-RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR---VSCYIQQDDRLQPLLT 124 (606)
Q Consensus 49 ~~iL~~vs~-~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~---~~~yv~Q~~~l~~~lt 124 (606)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.|.+.+.+.....+++ ..++.+|+.... .+.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR-DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI 86 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH-HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence 457888885 8999999999999999999999999986543 2577777665443322221 233333321110 000
Q ss_pred -HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCc--EEEEeCC
Q psy13765 125 -IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPR--VMFLDEP 201 (606)
Q Consensus 125 -v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~--lllLDEP 201 (606)
++......+ .. ......|.++.++...+. +...+|+ ++++|||
T Consensus 87 ~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 87 IIDALMKEKE-DQ---WSLVNLTPEELVNKVIEA------------------------------KQKLGYGKARLVIDSV 132 (235)
T ss_dssp EEECCC-----CT---TBCSSCCHHHHHHHHHHH------------------------------HHHHCSSCEEEEEETG
T ss_pred EEeccccccC-ce---eeecCCCHHHHHHHHHHH------------------------------HHhhCCCceEEEEECc
Confidence 000000001 00 011223666655544333 3334599 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCc-------hHHHhhcceeeeecCC
Q psy13765 202 TTGL--DSQSCSQCIKLLKMISQ-QGRTIICTIHQPS-------ATLFQMFDQVYLLSGG 251 (606)
Q Consensus 202 TsgL--D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~-------~~i~~~~D~v~~L~~G 251 (606)
|+++ |+....++++.|+++++ .|.|||+++|+.. ..+.+.||++++|++.
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9887 99999999999999975 5999999999972 2477899999999753
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.72 E-value=1.7e-18 Score=170.42 Aligned_cols=157 Identities=15% Similarity=0.158 Sum_probs=100.5
Q ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-C-----CccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHH
Q psy13765 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN-G-----VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMS 130 (606)
Q Consensus 57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~-~-----~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~ 130 (606)
+-+++||+++|+||||||||||+++|+|...+ . ..|.+++++..... .+.+++++|+..+.+. ++.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~----~~~~ 92 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD----EVLK 92 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH----HHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH----HHhh
Confidence 47999999999999999999999999995332 1 24578887754211 1235556666554432 3333
Q ss_pred HcCCccccCCccccCChHHH-HHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhh--hcCCcEEEEeCCCCCCCH
Q psy13765 131 LLGLDESQNTRSSQLSGGQK-KRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL--INNPRVMFLDEPTTGLDS 207 (606)
Q Consensus 131 ~~gl~~~~~~~~~~lSgGqr-qRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL--~~~P~lllLDEPTsgLD~ 207 (606)
.+.+ ....+++++ +.+..+.+++. +++ ..+|+++++||||+++|+
T Consensus 93 ~~~~-------~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~llilDe~~~~l~~ 140 (231)
T 4a74_A 93 HIYV-------ARAFNSNHQMLLVQQAEDKIK-------------------------ELLNTDRPVKLLIVDSLTSHFRS 140 (231)
T ss_dssp TEEE-------EECCSHHHHHHHHHHHHHHHH-------------------------HHTTSSSCEEEEEEETSSHHHHH
T ss_pred cEEE-------EecCChHHHHHHHHHHHHHHH-------------------------HhcccCCceeEEEECChHHHhcc
Confidence 2221 112344443 33444444443 111 346999999999999998
Q ss_pred HH------------HHHHHHHHHHHHh-CCCEEEEEecCCch---HHHhhcceeeeecCCc
Q psy13765 208 QS------------CSQCIKLLKMISQ-QGRTIICTIHQPSA---TLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 208 ~~------------~~~i~~~l~~l~~-~g~tii~~~H~~~~---~i~~~~D~v~~L~~G~ 252 (606)
.. ..++++.|+++++ .|.|||+++|.... .+...+|+++.|++|+
T Consensus 141 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 141 EYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 42 2367888888865 49999999995331 3668899999998753
No 98
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.70 E-value=2.1e-17 Score=192.03 Aligned_cols=95 Identities=22% Similarity=0.388 Sum_probs=87.5
Q ss_pred ccCCCCCCCCchhhhHHHHHHhhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcce
Q psy13765 167 FLDEPTTSNPNDQKKRLSIALELINNP--RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQ 244 (606)
Q Consensus 167 ~~de~~~~~s~g~~krl~IA~aL~~~P--~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~ 244 (606)
-+|.++..|||||||||.||++|..+| ++|+|||||+|||+.....+.++|++|++.|.|||+++|++. .+ +.||+
T Consensus 497 ~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~i-~~ADr 574 (972)
T 2r6f_A 497 TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-TM-LAADY 574 (972)
T ss_dssp BSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-HH-HSCSE
T ss_pred ccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCE
Confidence 378999999999999999999999985 999999999999999999999999999888999999999975 34 68999
Q ss_pred eeee------cCCcEEEEcChhHHH
Q psy13765 245 VYLL------SGGQCLYQGATDQLV 263 (606)
Q Consensus 245 v~~L------~~G~~~~~G~~~~~~ 263 (606)
|++| ++|++++.|+++++.
T Consensus 575 Ii~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 575 LIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp EEEECSSSGGGCCSEEEEECTTTTT
T ss_pred EEEeCCCccCCCCEEEEecCHHHHH
Confidence 9999 799999999998764
No 99
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.70 E-value=3.3e-17 Score=191.13 Aligned_cols=96 Identities=23% Similarity=0.390 Sum_probs=88.9
Q ss_pred ccCCCCCCCCchhhhHHHHHHhhhcC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcce
Q psy13765 167 FLDEPTTSNPNDQKKRLSIALELINN--PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQ 244 (606)
Q Consensus 167 ~~de~~~~~s~g~~krl~IA~aL~~~--P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~ 244 (606)
-+|.++..|||||||||.||++|..+ |++|+|||||+|||+.....+.++|++|++.|.|||+++|++. . .+.||+
T Consensus 514 ~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADr 591 (993)
T 2ygr_A 514 SLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED-T-IEHADW 591 (993)
T ss_dssp CTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HHTCSE
T ss_pred ccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH-H-HHhCCE
Confidence 37899999999999999999999999 5899999999999999999999999999989999999999975 3 468999
Q ss_pred eeee------cCCcEEEEcChhHHHH
Q psy13765 245 VYLL------SGGQCLYQGATDQLVN 264 (606)
Q Consensus 245 v~~L------~~G~~~~~G~~~~~~~ 264 (606)
|++| ++|++++.|+++++.+
T Consensus 592 Ii~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 592 IVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp EEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred EEEecCccccCCCEEEEeeCHHHhhh
Confidence 9999 7999999999998764
No 100
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.69 E-value=3.9e-18 Score=196.57 Aligned_cols=150 Identities=18% Similarity=0.118 Sum_probs=102.5
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHH
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIE 126 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~ 126 (606)
+++.+++|+|++ |++++|+||||||||||||+|+|+......|.+. . ..+..+++++| +++.+++.
T Consensus 564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------p--a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------P--AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------S--SSEEEECCCSE---EEEECCC-
T ss_pred CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------e--hhccceeeHHH---hhccCCHH
Confidence 346799999998 9999999999999999999999975311245432 1 12345788776 45555554
Q ss_pred HHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC---CC
Q psy13765 127 NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP---TT 203 (606)
Q Consensus 127 ~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP---Ts 203 (606)
+.+ ..++|+|+++++.+++++- .+++|++++|||| |+
T Consensus 630 d~l------------~~g~S~~~~e~~~la~il~----------------------------~a~~p~LlLLDEpgrGTs 669 (765)
T 1ewq_A 630 DDL------------AGGKSTFMVEMEEVALILK----------------------------EATENSLVLLDEVGRGTS 669 (765)
T ss_dssp -----------------CCSHHHHHHHHHHHHHH----------------------------HCCTTEEEEEESTTTTSC
T ss_pred HHH------------HhcccHHHHHHHHHHHHHH----------------------------hccCCCEEEEECCCCCCC
Confidence 322 2346888888887665550 1445999999999 99
Q ss_pred CCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 204 GLDSQSC-SQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 204 gLD~~~~-~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
+||..+. ..+++.|++ .|.|+|++||+.+ +.+++ .--+.++++....
T Consensus 670 ~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~--~~~v~n~~~~~~~ 717 (765)
T 1ewq_A 670 SLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG--LPRLKNLHVAARE 717 (765)
T ss_dssp HHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC--CTTEEEEEEEEEC
T ss_pred CcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh--hhcceEEEEEEEE
Confidence 9998875 567777765 5899999999954 34554 2233444444443
No 101
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.69 E-value=2.8e-18 Score=181.51 Aligned_cols=171 Identities=18% Similarity=0.189 Sum_probs=111.6
Q ss_pred cceee-eEEEeCCeEEEEECCCCCCHHHHHHHHhCCC--CCCC---ccE-EEECCccCChhhhcccEEEEccCCCCCCCC
Q psy13765 51 VLKNL-CGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR--SNGV---TGQ-ILTNGHSRNINAFRRVSCYIQQDDRLQPLL 123 (606)
Q Consensus 51 iL~~v-s~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~--~~~~---~G~-I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~l 123 (606)
.|+++ ++.+++|++++|+||||||||||++.|++.. ++.. .|+ |++++.... .++++++++|+..+.+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 46665 6899999999999999999999999999976 3321 368 899986531 13457778887665432
Q ss_pred cHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCC
Q psy13765 124 TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203 (606)
Q Consensus 124 tv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTs 203 (606)
.+++.+.+... .-|.+++|++.++++++.. +|+|| .+|+++++||||+
T Consensus 195 ---~v~~ni~~~~~------~~~~~~~~~l~~~~~~~~~------------lS~G~-----------~~~~llIlDs~ta 242 (349)
T 1pzn_A 195 ---EVLKHIYVARA------FNSNHQMLLVQQAEDKIKE------------LLNTD-----------RPVKLLIVDSLTS 242 (349)
T ss_dssp ---HHGGGEEEEEC------CSHHHHHHHHHHHHHHHHH------------SSSSS-----------SCEEEEEEETSST
T ss_pred ---HHhhCEEEEec------CChHHHHHHHHHHHHHHHH------------hcccc-----------CCCCEEEEeCchH
Confidence 33322221111 1257888888888887754 45665 5699999999999
Q ss_pred CCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcC
Q psy13765 204 GLDSQS------------CSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 204 gLD~~~------------~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~ 258 (606)
++|+.. ..++++.|+++++ .|.|||+++|... .....++......+|+++.++.
T Consensus 243 ~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 243 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp THHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred hhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 999852 3566777777766 4899999999865 3333455556666676655544
No 102
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.69 E-value=5.1e-19 Score=171.34 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=102.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC-hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCc-----
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLD----- 135 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~-~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~----- 135 (606)
|++++|+||||||||||+++|+|+.+ .+| |.++|.... ...+++.+||++|+.. ... +.+..++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~--~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~---~~l~~~~~~~~~~~ 72 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK--SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTR---GPLSRVGLEPPPGK 72 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH--HTT-CCCEEEECCEEETTSSEEEEEEEETT--SCE---EEEEECCCCCCSSS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc--cCC-EEEcCEecchhHhhhceEEEEEEecc--cce---ehhhcccccCCccc
Confidence 78999999999999999999999876 378 988886543 2345788999999751 111 111111111
Q ss_pred --cccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeC--CCCCCCHHHHH
Q psy13765 136 --ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE--PTTGLDSQSCS 211 (606)
Q Consensus 136 --~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDE--PTsgLD~~~~~ 211 (606)
...++....+|+|||+++.... . +|+|++.+|+++++|| ||..+|.....
T Consensus 73 ~~~~v~~~~~~ls~~er~~~~~l~----~----------------------~a~A~~~~~dvlilDE~g~~~~~~~~~~~ 126 (189)
T 2i3b_A 73 RECRVGQYVVDLTSFEQLALPVLR----N----------------------ADCSSGPGQRVCVIDEIGKMELFSQLFIQ 126 (189)
T ss_dssp CCEESSSSEECHHHHHTTTTTTTC----C----------------------CCCCCSSCCCCEEECCCSTTTTTCSHHHH
T ss_pred cccccceEEEcchHHHHHHHHHHh----h----------------------hhHhhccCCCEEEEeCCCccccccHHHHH
Confidence 1223334468888887663100 0 1125677899999999 89989987655
Q ss_pred HHHHHHHHHHhCCCEEEE----EecCCchHHHhhcceeeeecCCcEEEEc
Q psy13765 212 QCIKLLKMISQQGRTIIC----TIHQPSATLFQMFDQVYLLSGGQCLYQG 257 (606)
Q Consensus 212 ~i~~~l~~l~~~g~tii~----~~H~~~~~i~~~~D~v~~L~~G~~~~~G 257 (606)
.+.+++ +...++|+ ++|+.+ ..+.|++..+.+|+++...
T Consensus 127 ~l~~~l----~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 127 AVRQTL----STPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHHHH----HCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred HHHHHH----hCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 444444 44455553 238864 2578999999999988754
No 103
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.69 E-value=3.9e-18 Score=197.64 Aligned_cols=159 Identities=11% Similarity=0.045 Sum_probs=107.8
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHH
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIE 126 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~ 126 (606)
+++.+++|+|++ ++|++++|+||||||||||||+|+|.......| ..... -+..+++++| +++.+++.
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS--SEEEECCCCE---EEEEEC--
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch--hcccceeHHH---HHhhCCHH
Confidence 346799999999 999999999999999999999999963211122 11111 1234566555 44444443
Q ss_pred HHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCC
Q psy13765 127 NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206 (606)
Q Consensus 127 ~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD 206 (606)
+.+. .....+|+++++ ++.+.. .+++|++++||||++|+|
T Consensus 661 d~l~---------~~~stf~~e~~~-~~~il~------------------------------~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLA---------SGRSTFMVEMTE-TANILH------------------------------NATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------CHHHHHH-HHHHHH------------------------------HCCTTEEEEEESCCCCSS
T ss_pred HHHH---------hhhhhhhHHHHH-HHHHHH------------------------------hccCCCEEEEECCCCCCC
Confidence 3221 122345666654 332222 244599999999999999
Q ss_pred HHHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh
Q psy13765 207 SQSCSQC-IKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259 (606)
Q Consensus 207 ~~~~~~i-~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~ 259 (606)
+.....+ ..+++.+++ .|.|+|++||+++ +..++|++..+.+|++.+....
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~~ 753 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEHG 753 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEET
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEcC
Confidence 9887775 788888887 4999999999975 3578999988888888766543
No 104
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.68 E-value=7.7e-17 Score=186.87 Aligned_cols=94 Identities=27% Similarity=0.443 Sum_probs=86.8
Q ss_pred cCCCCCCCCchhhhHHHHHHhhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhccee
Q psy13765 168 LDEPTTSNPNDQKKRLSIALELINNP--RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV 245 (606)
Q Consensus 168 ~de~~~~~s~g~~krl~IA~aL~~~P--~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v 245 (606)
+|.++..|||||||||.||++|+.+| ++|+|||||+|||+.....+.++|++|+++|.|||+++|++. +.+.||+|
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~--~l~~aD~i 450 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLD--VIRRADWL 450 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH--HHTTCSEE
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEE
Confidence 68889999999999999999999999 599999999999999999999999999988999999999975 45789999
Q ss_pred eee------cCCcEEEEcChhHHH
Q psy13765 246 YLL------SGGQCLYQGATDQLV 263 (606)
Q Consensus 246 ~~L------~~G~~~~~G~~~~~~ 263 (606)
++| ++|++++.|+++++.
T Consensus 451 i~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 451 VDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp EEECSSSGGGCCSEEEEECGGGGG
T ss_pred EEeCCCcccCCCEEEEecCHHHHH
Confidence 999 799999999998764
No 105
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.68 E-value=1.7e-16 Score=172.28 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=68.8
Q ss_pred CCCCCchhhhHHHHHHhhh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeee
Q psy13765 172 TTSNPNDQKKRLSIALELI----NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYL 247 (606)
Q Consensus 172 ~~~~s~g~~krl~IA~aL~----~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 247 (606)
...+|||||||+.||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|+++|++ .....||+++.
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEE
Confidence 3458999999999999999 68999999999999999999999999999876688999999994 35688999999
Q ss_pred ec
Q psy13765 248 LS 249 (606)
Q Consensus 248 L~ 249 (606)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 106
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.68 E-value=8.6e-19 Score=181.79 Aligned_cols=157 Identities=13% Similarity=0.087 Sum_probs=81.4
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC-CCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcH
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI 125 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~-~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv 125 (606)
+++.+++|++++| +|+||||+|||||+|.|+|. ..+ .+| |.++|.+.....-.+.+++++|++.....+|+
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~-~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP-ERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC--------------------------CEEEEC---CCEEEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC-CCC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 4578999999998 99999999999999999997 444 478 88888664332223568899998877777765
Q ss_pred HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCC-
Q psy13765 126 ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTG- 204 (606)
Q Consensus 126 ~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsg- 204 (606)
.+... .....+. .++.+ .+...+.. ..+.....+|+|+|||+.+|+|++ ++++||||++
T Consensus 81 ~Dt~g---~~~~~~~-------~e~~~-~l~~~l~~-----~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 81 VDTPG---YGDAINC-------RDCFK-TIISYIDE-----QFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EEEC---------------------CT-THHHHHHH-----HHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred hhhhh---hhhhcCc-------HHHHH-HHHHHHHH-----HHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 43221 1100000 00000 01110000 012233457899999999999875 9999999985
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q psy13765 205 LDSQSCSQCIKLLKMISQQ-GRTIICTIHQPS 235 (606)
Q Consensus 205 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~ 235 (606)
||+... +.++++.++ +.++|++.||..
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 566666654 789999999965
No 107
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.67 E-value=3.2e-19 Score=174.22 Aligned_cols=146 Identities=15% Similarity=0.166 Sum_probs=104.7
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCC--CCCcHHHHHHHcCCcc
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQ--PLLTIENVMSLLGLDE 136 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~--~~ltv~~~l~~~gl~~ 136 (606)
.++|++++|+||||||||||+++|+|+..+ .++|++|++.++ ..+++.+.... ....
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~-~~~~ 61 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRV-NYDH 61 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHS-CTTS
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCC-CCCC
Confidence 478999999999999999999999997431 589999998876 45676544322 1110
Q ss_pred ccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchh----hhHHHHHHhhhcCCcEEEEeCCCCC-------C
Q psy13765 137 SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQ----KKRLSIALELINNPRVMFLDEPTTG-------L 205 (606)
Q Consensus 137 ~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~----~krl~IA~aL~~~P~lllLDEPTsg-------L 205 (606)
.... .++++.-+.+.+...+ ..+.|....|+|+ +||+.+|++++.+|+++++||||++ |
T Consensus 62 -----~~~~---~~~~~~~~l~~~~~~~--~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 62 -----PDAF---DLALYLEHAQALLRGL--PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp -----GGGB---CHHHHHHHHHHHHTTC--CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred -----hhhh---hHHHHHHHHHHHHcCC--CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 0111 1233322222222211 2355777788886 4788999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHH-HhCCCEEEEEecCCc
Q psy13765 206 DSQSCSQCIKLLKMI-SQQGRTIICTIHQPS 235 (606)
Q Consensus 206 D~~~~~~i~~~l~~l-~~~g~tii~~~H~~~ 235 (606)
|+.....+.+.+++. +++|+|++.++|+..
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999876 456999999999743
No 108
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.66 E-value=4.7e-18 Score=192.27 Aligned_cols=193 Identities=15% Similarity=0.208 Sum_probs=115.0
Q ss_pred EEEEEeeEEEEecCCcccccccccceee----------eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEEC
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNL----------CGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN 97 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~ 97 (606)
.++++||+..|+. ..+++|+.+ +++++. ++|+|||||||||||++|+|+..|..+|.|.++
T Consensus 10 ~i~~~~l~~~~~~------~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~ 80 (608)
T 3szr_A 10 SVAENNLCSQYEE------KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRC 80 (608)
T ss_dssp ----------CHH------HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCS
T ss_pred hhhhhhhhHHHHH------HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEc
Confidence 5788999988642 123344433 355554 999999999999999999999765348999999
Q ss_pred CccCC------hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCC
Q psy13765 98 GHSRN------INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171 (606)
Q Consensus 98 G~~~~------~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~ 171 (606)
|.+.. ...+++.++|++|++.+++.+||.+.+..... .....
T Consensus 81 g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~------------------------~~~~~-------- 128 (608)
T 3szr_A 81 PLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN------------------------AIAGE-------- 128 (608)
T ss_dssp CEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH------------------------HHHCS--------
T ss_pred CEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH------------------------HhcCC--------
Confidence 97631 24567889999999999998888665543100 00000
Q ss_pred CCCCCchhhhHHHHHHhhhcCCcEEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCCch------H
Q psy13765 172 TTSNPNDQKKRLSIALELINNPRVMFLDEP------TTGLDSQSCSQCIKLLKMISQ--QGRTIICTIHQPSA------T 237 (606)
Q Consensus 172 ~~~~s~g~~krl~IA~aL~~~P~lllLDEP------TsgLD~~~~~~i~~~l~~l~~--~g~tii~~~H~~~~------~ 237 (606)
-.+..++++.++.+...+|+++++||| |+|||+.....+.++++++.+ .+.++++++|+.+. .
T Consensus 129 ---~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~ 205 (608)
T 3szr_A 129 ---GMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALS 205 (608)
T ss_dssp ---SSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHH
T ss_pred ---ccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHH
Confidence 000111223344445556999999999 999999999999999999754 36788999998752 1
Q ss_pred HHhhc-----ceeeeecCCcEEEEcChhHHHH
Q psy13765 238 LFQMF-----DQVYLLSGGQCLYQGATDQLVN 264 (606)
Q Consensus 238 i~~~~-----D~v~~L~~G~~~~~G~~~~~~~ 264 (606)
+.+.. ..|.++.++..+..|+.+++.+
T Consensus 206 la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 206 MAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp HHHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred HHHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 22222 3467778888777777654443
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.66 E-value=4.3e-17 Score=172.71 Aligned_cols=128 Identities=23% Similarity=0.364 Sum_probs=91.1
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccc
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDES 137 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~ 137 (606)
...+|++++|+|||||||||||++|+|..++...|.|...+.+... ..+...++++|.+......+..+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~~~~~~---------- 187 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF-VHESKKCLVNQREVHRDTLGFSE---------- 187 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTBSCHHH----------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh-hhhccccceeeeeeccccCCHHH----------
Confidence 6789999999999999999999999998765325777655544321 22334456666544333233222
Q ss_pred cCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHH
Q psy13765 138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL 217 (606)
Q Consensus 138 ~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l 217 (606)
+ ||+||..+|++|++|||| |..+ .+.+
T Consensus 188 ----------------~------------------------------La~aL~~~PdvillDEp~---d~e~----~~~~ 214 (356)
T 3jvv_A 188 ----------------A------------------------------LRSALREDPDIILVGEMR---DLET----IRLA 214 (356)
T ss_dssp ----------------H------------------------------HHHHTTSCCSEEEESCCC---SHHH----HHHH
T ss_pred ----------------H------------------------------HHHHhhhCcCEEecCCCC---CHHH----HHHH
Confidence 4 556666669999999999 6555 4444
Q ss_pred HHHHhCCCEEEEEecCCchHHHhhcceeeeecCC
Q psy13765 218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGG 251 (606)
Q Consensus 218 ~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 251 (606)
.+++++|.||++|+|+.+. + +.+||++.|..|
T Consensus 215 ~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 215 LTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 5556779999999999874 4 889999999654
No 110
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.65 E-value=4.7e-17 Score=168.86 Aligned_cols=143 Identities=15% Similarity=0.206 Sum_probs=97.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-------hhh--cccEEEEccCCCCCCCCcHHHHHHH
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-------NAF--RRVSCYIQQDDRLQPLLTIENVMSL 131 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-------~~~--~~~~~yv~Q~~~l~~~ltv~~~l~~ 131 (606)
+|++++|+||||||||||+++|+|+..+ .+|+|.++|.+... ..+ ++.++|++|++.+.|..++.+.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 7999999999999999999999999876 48999999986421 112 3468999999988887777655432
Q ss_pred cCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCC------CCchhhhHHHHHHhhhcCCcEEEEeCCCCCC
Q psy13765 132 LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS------NPNDQKKRLSIALELINNPRVMFLDEPTTGL 205 (606)
Q Consensus 132 ~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~------~s~g~~krl~IA~aL~~~P~lllLDEPTsgL 205 (606)
... .+.++.++|.+... .+..++||+.||||++.+|+.++| .|
T Consensus 180 ~~~--------------------------~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vL 228 (304)
T 1rj9_A 180 MKA--------------------------RGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VL 228 (304)
T ss_dssp HHH--------------------------HTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EE
T ss_pred HHh--------------------------CCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EE
Confidence 100 01111122211110 122345666677777777994444 45
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q psy13765 206 DSQSCSQCIKLLKMISQQ-GRTIICTIHQPS 235 (606)
Q Consensus 206 D~~~~~~i~~~l~~l~~~-g~tii~~~H~~~ 235 (606)
|+.+..++++.++++.++ |.|+|++||+..
T Consensus 229 Da~t~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 229 DAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp ETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred cHHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 555556677777887764 999999999854
No 111
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.62 E-value=2.8e-17 Score=159.47 Aligned_cols=181 Identities=14% Similarity=0.095 Sum_probs=90.1
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-----CCCCccEEEECCcc-C
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR-----SNGVTGQILTNGHS-R 101 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~-----~~~~~G~I~~~G~~-~ 101 (606)
.|+++|+++.|. ..++++ +.+++|+.++|+|+||||||||+|.|+|.. .+ ..|++...+.. .
T Consensus 3 ~l~~~~~~~~~~---------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~-~~G~~~~~~~~~~ 70 (210)
T 1pui_A 3 NLNYQQTHFVMS---------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK-TPGRTQLINLFEV 70 (210)
T ss_dssp --------CEEE---------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEE
T ss_pred chhhhhhhheee---------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC-CCccceeeEEEEe
Confidence 378999999873 257887 889999999999999999999999999976 33 35554432110 0
Q ss_pred -ChhhhcccEEEEccCCCCCCCCc-------HHHHHHHcCCcc----ccCCccccCChHHHHHHHHHHHHhcCCcccccC
Q psy13765 102 -NINAFRRVSCYIQQDDRLQPLLT-------IENVMSLLGLDE----SQNTRSSQLSGGQKKRLSIALELINNPRVMFLD 169 (606)
Q Consensus 102 -~~~~~~~~~~yv~Q~~~l~~~lt-------v~~~l~~~gl~~----~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~d 169 (606)
....+....|+..++ .+... +...++.....+ ..|. ....+. +.+++.-.......| +++..
T Consensus 71 ~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~~-~~~~~~~~~~~~~~~-~~~v~ 144 (210)
T 1pui_A 71 ADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDI-RHPLKD-LDQQMIEWAVDSNIA-VLVLL 144 (210)
T ss_dssp ETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEET-TSCCCH-HHHHHHHHHHHTTCC-EEEEE
T ss_pred cCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEEC-CCCCch-hHHHHHHHHHHcCCC-eEEEE
Confidence 000000000110000 00000 011111100000 0000 001222 112221111112222 23334
Q ss_pred CCCCCCCchhhhH-HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy13765 170 EPTTSNPNDQKKR-LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRT 226 (606)
Q Consensus 170 e~~~~~s~g~~kr-l~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~t 226 (606)
.....+|+||||| +..+++++.+|+++++|||||++|.....++.+.|.++.++|.|
T Consensus 145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 4455677788777 67888888889999999999999999999999999998766644
No 112
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.60 E-value=2.9e-16 Score=160.53 Aligned_cols=138 Identities=19% Similarity=0.165 Sum_probs=88.4
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCC-------------Cc
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPL-------------LT 124 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~-------------lt 124 (606)
.+++|++++|+||||||||||++.+++... .|++. .|..... ...+.|+..++..... ..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~---~g~~~-~g~~~~~---~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~ 98 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA---GGPDL-LEVGELP---TGPVIYLPAEDPPTAIHHRLHALGAHLSAEE 98 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH---TCCCT-TCCCCCC---CCCEEEEESSSCHHHHHHHHHHHHTTSCHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh---cCCCc-CCCccCC---CccEEEEECCCCHHHHHHHHHHHHhhcChhh
Confidence 589999999999999999999999998532 34442 3432211 2346676655432100 00
Q ss_pred HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCC-
Q psy13765 125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT- 203 (606)
Q Consensus 125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTs- 203 (606)
.+++++.+++.+.. +.+...+|+||++++ ++++.+|+++++||||+
T Consensus 99 ~~~~~~~l~l~~~~------------------------------~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~ 145 (279)
T 1nlf_A 99 RQAVADGLLIQPLI------------------------------GSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRF 145 (279)
T ss_dssp HHHHHHHEEECCCT------------------------------TSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGG
T ss_pred hhhccCceEEeecC------------------------------CCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHh
Confidence 11222333333333 334444555554432 45566799999999999
Q ss_pred -CCCHHHH---HHHHHHHHHHHh-CCCEEEEEecCCc
Q psy13765 204 -GLDSQSC---SQCIKLLKMISQ-QGRTIICTIHQPS 235 (606)
Q Consensus 204 -gLD~~~~---~~i~~~l~~l~~-~g~tii~~~H~~~ 235 (606)
++|.... .++++.|+++++ .|+|||+++|+..
T Consensus 146 ~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 146 HIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp CCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred cCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 9998544 788889999875 5999999999965
No 113
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.58 E-value=3.4e-18 Score=181.78 Aligned_cols=163 Identities=14% Similarity=0.063 Sum_probs=91.9
Q ss_pred cceeeeEEEeC--CeEEEEECCCCCCHHHHHHHHhCCCCCCCc----cEEEEC----CccC--ChhhhcccEEEEccCCC
Q psy13765 51 VLKNLCGRFPS--NQLIAIMGPSGAGKSSLLDVLSGYRSNGVT----GQILTN----GHSR--NINAFRRVSCYIQQDDR 118 (606)
Q Consensus 51 iL~~vs~~i~~--Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~----G~I~~~----G~~~--~~~~~~~~~~yv~Q~~~ 118 (606)
+.+.|++++++ |+.++|+||||||||||+++|+|+..+ .+ |++.++ |.+. ...++ +.+++++|+..
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~-~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT-TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC-EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC-CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHH
Confidence 46789999999 999999999999999999999999876 46 777763 3322 12233 34666666532
Q ss_pred CCCCCcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhh-hcCCcEEE
Q psy13765 119 LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL-INNPRVMF 197 (606)
Q Consensus 119 l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL-~~~P~lll 197 (606)
++. .|+.+.+...+ .+..++.+..+|+|+ +++..+++++ ..+|++++
T Consensus 235 ~~~-~t~~~nl~~~~-~~~~~~~~~~~~~~~------------------------------~~~~~i~~~~~~~~~~lll 282 (365)
T 1lw7_A 235 DYA-VRHSHKIAFID-TDFITTQAFCIQYEG------------------------------KAHPFLDSMIKEYPFDVTI 282 (365)
T ss_dssp HHH-HHHCSSEEEES-SCHHHHHHHHHHHHS------------------------------CCCHHHHHHHHHSCCSEEE
T ss_pred HHH-HhccCCEEEEe-CCchHHHHHHHHHcC------------------------------CCCHHHHHHHhhcCCCEEE
Confidence 211 11111000000 000111111223333 3444444443 24577777
Q ss_pred EeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeec
Q psy13765 198 LDE---PT------TGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 198 LDE---PT------sgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
||| |+ .++|...+..+.+.|+++.+ .|.+|++++|. + ...+++|++..++
T Consensus 283 LdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 283 LLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred ECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 777 54 46777777777777776644 36677777654 3 3446667666664
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.57 E-value=1.5e-16 Score=157.53 Aligned_cols=152 Identities=16% Similarity=0.207 Sum_probs=101.4
Q ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCc
Q psy13765 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN-GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLD 135 (606)
Q Consensus 57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~-~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~ 135 (606)
-..++|++++|+||||||||||+|+|+|..++ ...|.|.+++++... ..++.++|++|++..++.++++.-. ++
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f----~E 85 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAF----LE 85 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCE----EE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHH----HH
Confidence 35789999999999999999999999998764 368999998876542 2356789999988766655441100 00
Q ss_pred cccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHH
Q psy13765 136 ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK 215 (606)
Q Consensus 136 ~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~ 215 (606)
.. . ..+.+.|-.++++ .+++. ++++++|| ||+.++.++.+
T Consensus 86 ~~-~-~~~~~yg~~~~~v---~~~l~------------------------------~G~illLD-----LD~~~~~~i~~ 125 (219)
T 1s96_A 86 HA-E-VFGNYYGTSREAI---EQVLA------------------------------TGVDVFLD-----IDWQGAQQIRQ 125 (219)
T ss_dssp EE-E-ETTEEEEEEHHHH---HHHHT------------------------------TTCEEEEE-----CCHHHHHHHHH
T ss_pred HH-H-HHhccCCCCHHHH---HHHHh------------------------------cCCeEEEE-----ECHHHHHHHHH
Confidence 00 0 0011111112222 22233 38999999 99999999998
Q ss_pred HHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcChhHHHHHHH
Q psy13765 216 LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLS 267 (606)
Q Consensus 216 ~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~~~~~~~f~ 267 (606)
.+. +++||++++|+++. +. .|+ +.+| .++++++...++
T Consensus 126 ~l~----~~~tI~i~th~~~~-l~---~Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 126 KMP----HARSIFILPPSKIE-LD---RRL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp HCT----TCEEEEEECSSHHH-HH---HHH--HTTS----CSCHHHHHHHHH
T ss_pred Hcc----CCEEEEEECCCHHH-HH---HHH--HHcC----CCCHHHHHHHHH
Confidence 876 58999999999763 33 353 6777 577887776543
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.56 E-value=3.7e-15 Score=145.52 Aligned_cols=155 Identities=16% Similarity=0.163 Sum_probs=96.9
Q ss_pred ccceeee-EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc-CChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765 50 DVLKNLC-GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSCYIQQDDRLQPLLTIEN 127 (606)
Q Consensus 50 ~iL~~vs-~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~-~~~~~~~~~~~yv~Q~~~l~~~ltv~~ 127 (606)
+.|+++. +-+++|++++|+||||||||||++.|++ ..+ .+.++++... .+...+++.. +.. ....++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~-~~v~~i~~~~~~~~~~~~~~~----~~~----~~~~~~ 75 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG-KKVAYVDTEGGFSPERLVQMA----ETR----GLNPEE 75 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC-SEEEEEESSCCCCHHHHHHHH----HTT----TCCHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC-CcEEEEECCCCCCHHHHHHHH----Hhc----CCChHH
Confidence 4577766 4799999999999999999999999998 221 3445554432 1111111100 000 011122
Q ss_pred HHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcC-CcEEEEeCCCCCCC
Q psy13765 128 VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINN-PRVMFLDEPTTGLD 206 (606)
Q Consensus 128 ~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~-P~lllLDEPTsgLD 206 (606)
+++.+ .+...+++++ +++++..+++++.+ |+++++||||+++|
T Consensus 76 ~~~~~--------~~~~~~~~~~----------------------------~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 76 ALSRF--------ILFTPSDFKE----------------------------QRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HHHHE--------EEECCTTTSH----------------------------HHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred HhhcE--------EEEecCCHHH----------------------------HHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 22111 1112233322 23344556666654 99999999999999
Q ss_pred HHH--------HHHHHHHHHHHHhC-CCEEEEEecCCch------------HHHhhcceeeeecCC
Q psy13765 207 SQS--------CSQCIKLLKMISQQ-GRTIICTIHQPSA------------TLFQMFDQVYLLSGG 251 (606)
Q Consensus 207 ~~~--------~~~i~~~l~~l~~~-g~tii~~~H~~~~------------~i~~~~D~v~~L~~G 251 (606)
+.. ..++++.|++++++ |.|||+++|.... .+...+|++++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 743 24566668888764 9999999998652 467899999999754
No 116
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.53 E-value=2.3e-15 Score=159.86 Aligned_cols=138 Identities=13% Similarity=0.112 Sum_probs=99.2
Q ss_pred cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc-CChhhhcccEEEEc-cCCCCCCCCcHHHH
Q psy13765 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSCYIQ-QDDRLQPLLTIENV 128 (606)
Q Consensus 51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~-~~~~~~~~~~~yv~-Q~~~l~~~ltv~~~ 128 (606)
+++++|+.+++|++++|+||||||||||+|+|+|+.++ .+|.|.++|.. ......++.+++++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~--------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE--------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEESSSCCCCTTCSSEEEEECC--------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEECCccccCccccCCEEEEeecCcccc---------
Confidence 34999999999999999999999999999999999876 58999999853 22233567799999 66432
Q ss_pred HHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHH
Q psy13765 129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQ 208 (606)
Q Consensus 129 l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~ 208 (606)
+ ++++...|.. |+.++..+|+.+++|||+.
T Consensus 234 ----~-----------~~~~~t~~~~------------------------------i~~~l~~~pd~~l~~e~r~----- 263 (361)
T 2gza_A 234 ----E-----------ENAPVTAATL------------------------------LRSCLRMKPTRILLAELRG----- 263 (361)
T ss_dssp --------------------CCHHHH------------------------------HHHHTTSCCSEEEESCCCS-----
T ss_pred ----c-----------cccccCHHHH------------------------------HHHHHhcCCCEEEEcCchH-----
Confidence 0 0122223444 4444444599999999986
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecCCc
Q psy13765 209 SCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 209 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 252 (606)
.++.+.++.+.....|++.++|..+ ....+||+..+..|.
T Consensus 264 --~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 --GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp --THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred --HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 2455667766554468899999966 457899999998764
No 117
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.53 E-value=2.5e-15 Score=160.26 Aligned_cols=132 Identities=21% Similarity=0.405 Sum_probs=95.2
Q ss_pred ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM 129 (606)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l 129 (606)
.+|++++ +++|++++|+||||||||||+++|+|+.++..+|+|.+.|.+.. ..+++.+++|+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-YVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-SCCCCSSSEEEEEE------------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-hhhccCceEEEeee------------
Confidence 3567765 78999999999999999999999999876522799987776554 23466788999852
Q ss_pred HHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHH
Q psy13765 130 SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS 209 (606)
Q Consensus 130 ~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~ 209 (606)
+|++ +..+ +.+ |+++|..+|+++++|||| |..+
T Consensus 191 --~g~~------~~~~------~~~------------------------------l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 --VGED------TKSF------ADA------------------------------LRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp --BTTT------BSCS------HHH------------------------------HHHHTTSCCSEEEESCCC---SHHH
T ss_pred --cCCC------HHHH------HHH------------------------------HHHHhhhCcCEEEECCCC---CHHH
Confidence 2221 1223 234 445555559999999999 7766
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeec
Q psy13765 210 CSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS 249 (606)
Q Consensus 210 ~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 249 (606)
... .++. +..|.+++.|+|+.+ +.+.+||++.|.
T Consensus 224 ~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 443 3443 356899999999965 568899998774
No 118
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.50 E-value=3.7e-16 Score=168.73 Aligned_cols=162 Identities=17% Similarity=0.200 Sum_probs=91.3
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CccEEEECCccCChhhh
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG-VTGQILTNGHSRNINAF 106 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~-~~G~I~~~G~~~~~~~~ 106 (606)
.|+++||+++| +.+.+++|+|++| +|+||||||||||+|+|+|...+. ..|.+.+++.+ ...
T Consensus 11 ~l~~~~l~~~y--------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~ 73 (418)
T 2qag_C 11 YVGFANLPNQV--------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQ 73 (418)
T ss_dssp ----CCCCCCT--------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCE
T ss_pred cEEEEecceeE--------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---cee
Confidence 48889998764 4567999999998 999999999999999999986531 12222222111 112
Q ss_pred cccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHH
Q psy13765 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185 (606)
Q Consensus 107 ~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~I 185 (606)
.+.+++++|++.+++.+|+.+.+ |+....+ ..+ .+.+ ...+ .+ .++.+.++|+.|
T Consensus 74 ~~~i~~v~q~~~~~~~Ltv~Dt~---g~~~~~~-------~~~~~~~i--~~~i-~~-----------~~~~~l~qr~~I 129 (418)
T 2qag_C 74 VEQSKVLIKEGGVQLLLTIVDTP---GFGDAVD-------NSNCWQPV--IDYI-DS-----------KFEDYLNAESRV 129 (418)
T ss_dssp EEEEECC------CEEEEEEECC---------------------CHHH--HHHH-HH-----------HHHHHTTTSCC-
T ss_pred eeeEEEEEecCCcccceeeeech---hhhhhcc-------chhhHHHH--HHHH-HH-----------HHHHHHHHHHHH
Confidence 35689999988877777754322 1111110 000 0111 0000 00 123456778889
Q ss_pred HHhhhcCCc---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 186 ALELINNPR---VMFLDEPT-TGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 186 A~aL~~~P~---lllLDEPT-sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
|++++.+|+ +|++|||| .|||+... ++++++.. +.+||+++|..+
T Consensus 130 aRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 130 NRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred HHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 999999999 99999999 69998873 44555544 788888888743
No 119
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.48 E-value=1.5e-16 Score=152.63 Aligned_cols=170 Identities=16% Similarity=0.198 Sum_probs=105.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCc---ccc
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLD---ESQ 138 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~---~~~ 138 (606)
|++++|+||||||||||+++|++. .+|.+.++|.+... ....++++|.....+..++.+.+...... ...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH----SSSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc----cCCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999972 36899998854311 12346677765444444554433321000 000
Q ss_pred CCcccc-CChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHH------hhhcCCcEEEEeCCCCCCCHHHHH
Q psy13765 139 NTRSSQ-LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL------ELINNPRVMFLDEPTTGLDSQSCS 211 (606)
Q Consensus 139 ~~~~~~-lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~------aL~~~P~lllLDEPTsgLD~~~~~ 211 (606)
+..+.. +....++++ +.++. |+|+++++.++. ++..+|+...+|| |||+....
T Consensus 75 ~~ild~~~~~~~~~~~---~~~~~--------------s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~ 134 (189)
T 2bdt_A 75 DVVLDYIAFPDEAEAL---AQTVQ--------------AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLE 134 (189)
T ss_dssp EEEEESCCCHHHHHHH---HHHHH--------------HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGH
T ss_pred cEEEeeccCHHHHHHH---HHHHH--------------hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHH
Confidence 001111 121222221 11110 456677777777 8888899888884 89998888
Q ss_pred HHHHHHHHHHhCCCEEEEEecC-CchHHHhhcceeeeecCCcEEEEcChhHH
Q psy13765 212 QCIKLLKMISQQGRTIICTIHQ-PSATLFQMFDQVYLLSGGQCLYQGATDQL 262 (606)
Q Consensus 212 ~i~~~l~~l~~~g~tii~~~H~-~~~~i~~~~D~v~~L~~G~~~~~G~~~~~ 262 (606)
. .+.++.+.+.+.++|.++|+ ++ ++.+.||+|+ ++|+++..|+++-+
T Consensus 135 ~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 135 L-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp H-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC------
T ss_pred H-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCch
Confidence 8 88888876668899999998 76 4778999999 99999999998654
No 120
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.48 E-value=9.5e-14 Score=132.30 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=73.3
Q ss_pred cCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHH
Q psy13765 138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL 217 (606)
Q Consensus 138 ~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l 217 (606)
..+.+..||||||||+++|++++.+| ...|++++|||||+|||+.+...+.+.|
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~--------------------------~~~~~~llLDEp~a~LD~~~~~~~~~~l 111 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQK--------------------------FKPAPFYLFDEIDAHLDDANVKRVADLI 111 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHH--------------------------HSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHhcc--------------------------cCCCCEEEECCCccCCCHHHHHHHHHHH
Confidence 34567789999999999888876431 1227999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCchHHHhhcceeeeec--CCcE-EEEcChhHH
Q psy13765 218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLS--GGQC-LYQGATDQL 262 (606)
Q Consensus 218 ~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~--~G~~-~~~G~~~~~ 262 (606)
+++++ +.++|+++|+. .+...+|+++.+. +|.. +...+.++.
T Consensus 112 ~~~~~-~~~~ivith~~--~~~~~ad~i~~v~~~~g~s~~~~~~~~~~ 156 (173)
T 3kta_B 112 KESSK-ESQFIVITLRD--VMMANADKIIGVSMRDGVSKVVSLSLEKA 156 (173)
T ss_dssp HHHTT-TSEEEEECSCH--HHHTTCSEEEEEEEETTEEEEEECCHHHH
T ss_pred HHhcc-CCEEEEEEecH--HHHHhCCEEEEEEecCCEEEEEEEEcHHH
Confidence 99865 46899999995 3568999998664 5643 233444443
No 121
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.45 E-value=5.3e-15 Score=159.33 Aligned_cols=174 Identities=16% Similarity=0.167 Sum_probs=104.4
Q ss_pred cccccceeeeEEEeCCeE--EEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCc
Q psy13765 47 EPKDVLKNLCGRFPSNQL--IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT 124 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~--~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~lt 124 (606)
+..+ |+++|+++++|++ ++|+||||||||||+|+|+|..- .|..... ......++.++|++|++.+++.+|
T Consensus 26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l---~g~~~~~---~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF---EGEPATH---TQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc---cCCcCCC---CCccceEeeEEEEeecCccccccc
Confidence 3445 9999999999999 99999999999999999999842 2221110 111223457999999988877777
Q ss_pred HHHHHHHcCCccccCCc--cccCChHHHHHHHH--HHHH--------hcCCc----ccccCCCCCCCCchhhhHHHHHHh
Q psy13765 125 IENVMSLLGLDESQNTR--SSQLSGGQKKRLSI--ALEL--------INNPR----VMFLDEPTTSNPNDQKKRLSIALE 188 (606)
Q Consensus 125 v~~~l~~~gl~~~~~~~--~~~lSgGqrqRv~i--a~~L--------~~~~~----~~~~de~~~~~s~g~~krl~IA~a 188 (606)
+.+. +++....+.. -..++.-.+++..- ...+ ..+.+ ++++......++..+ ++|+++
T Consensus 99 v~D~---~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~ 172 (427)
T 2qag_B 99 IVST---VGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKK 172 (427)
T ss_dssp EEEE---ECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHH
T ss_pred hhhh---hhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHH
Confidence 5432 2222111100 00011111222211 1110 01112 223333333455444 789999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q psy13765 189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKM-ISQQGRTIICTIHQ 233 (606)
Q Consensus 189 L~~~P~lllLDEPTsgLD~~~~~~i~~~l~~-l~~~g~tii~~~H~ 233 (606)
|..+++++++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 173 L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 173 LDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp TCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999999999999999999999999886 87789999988865
No 122
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.45 E-value=2.8e-13 Score=134.09 Aligned_cols=149 Identities=11% Similarity=0.181 Sum_probs=89.2
Q ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhC--CCCC----CCccEEEECCccC-Chhh---hcccEEEEccCCCCCCCCcHH
Q psy13765 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSG--YRSN----GVTGQILTNGHSR-NINA---FRRVSCYIQQDDRLQPLLTIE 126 (606)
Q Consensus 57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g--~~~~----~~~G~I~~~G~~~-~~~~---~~~~~~yv~Q~~~l~~~ltv~ 126 (606)
+-+++|++++|+||||||||||++.|++ ..++ ...|.+++++... .... ..+.+++.+|
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~----------- 87 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS----------- 87 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----------
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH-----------
Confidence 5699999999999999999999999999 3332 1367888888652 2221 2233343332
Q ss_pred HHHHHcCCccccCCccccCChHHHHH-HHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCC
Q psy13765 127 NVMSLLGLDESQNTRSSQLSGGQKKR-LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205 (606)
Q Consensus 127 ~~l~~~gl~~~~~~~~~~lSgGqrqR-v~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgL 205 (606)
++++.+.+ ....+..+... +..+.+++. ..+|+++++|||++.+
T Consensus 88 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~lliiD~~~~~~ 132 (243)
T 1n0w_A 88 DVLDNVAY-------ARAFNTDHQTQLLYQASAMMV----------------------------ESRYALLIVDSATALY 132 (243)
T ss_dssp HHHHTEEE-------EECCSHHHHHHHHHHHHHHHH----------------------------HSCEEEEEEETSSGGG
T ss_pred HHhhCeEE-------EecCCHHHHHHHHHHHHHHHh----------------------------cCCceEEEEeCchHHH
Confidence 22222111 11234444332 221222221 1359999999999999
Q ss_pred CHH-------H-----HHHHHHHHHHHHhC-CCEEEEEecCCchH------------------HHhhcceeeeecCC
Q psy13765 206 DSQ-------S-----CSQCIKLLKMISQQ-GRTIICTIHQPSAT------------------LFQMFDQVYLLSGG 251 (606)
Q Consensus 206 D~~-------~-----~~~i~~~l~~l~~~-g~tii~~~H~~~~~------------------i~~~~D~v~~L~~G 251 (606)
|+. + ..++++.|++++++ |.|||+++|..... +...||.+++|++|
T Consensus 133 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 133 RTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 975 3 34566667776654 99999999965421 22279999999865
No 123
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.42 E-value=8.3e-15 Score=140.26 Aligned_cols=158 Identities=10% Similarity=0.039 Sum_probs=93.7
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChh-hhcccEEEEccCCCCCCCCcHHHHHHHc----
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN-AFRRVSCYIQQDDRLQPLLTIENVMSLL---- 132 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~-~~~~~~~yv~Q~~~l~~~ltv~~~l~~~---- 132 (606)
.+++|++++|+||||||||||+++|+|. + ..|.|.++|.+.... ..++.++|++|+.. +..++.+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~-~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--P-GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--S-SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--c-CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999997 3 379999998643111 11234677777543 334554433221
Q ss_pred ---CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHH
Q psy13765 133 ---GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS 209 (606)
Q Consensus 133 ---gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~ 209 (606)
|.....+...... +.+... . .+.+...+|+|++||+.++|++.++|+++ +|+..
T Consensus 80 ~~~~~~~~~~~~~~~~---~l~~~~-------~-----~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~ 136 (191)
T 1zp6_A 80 AKEGYFVILDGVVRPD---WLPAFT-------A-----LARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLV 136 (191)
T ss_dssp HHTSCEEEECSCCCTT---TTHHHH-------T-----TCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHH
T ss_pred hccCCeEEEeccCcHH---HHHHHH-------h-----cCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHH
Confidence 1111111111000 000000 0 02344567889999999999999999876 68887
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceee
Q psy13765 210 CSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY 246 (606)
Q Consensus 210 ~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~ 246 (606)
...+.+.++.+...+..+|.++|+ + +.+.+|+++
T Consensus 137 ~~~~~~~~~~l~~~~~~~i~t~~~-~--~~~~~~~i~ 170 (191)
T 1zp6_A 137 VADLHSQFADLGAFEHHVLPVSGK-D--TDQALQSAI 170 (191)
T ss_dssp HHHHHHHTTCCGGGGGGEEECTTC-C--TTTTTTTTH
T ss_pred HHHHHHHHhccCcccccEEECCCC-C--HHHHHHHHH
Confidence 777777776654433344444432 2 124455553
No 124
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.42 E-value=3.2e-14 Score=135.31 Aligned_cols=46 Identities=15% Similarity=0.118 Sum_probs=41.5
Q ss_pred CCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q psy13765 192 NPRVMFLDEPTT-GLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT 237 (606)
Q Consensus 192 ~P~lllLDEPTs-gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~ 237 (606)
+|++|+||||++ ++|+.....+.+++.+..++|+++|++||.+..+
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 499999999995 9999999999999998888899999999998654
No 125
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.42 E-value=1.4e-15 Score=142.86 Aligned_cols=85 Identities=14% Similarity=0.066 Sum_probs=69.0
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHH
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIE 126 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~ 126 (606)
+++.+++++|+++++|++++|+||||||||||+|+|+|.. + .+|+|.++|.+... .... ..+++|+..++ .+|+.
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~-~~G~V~~~g~~i~~-~~~~-~~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G-HQGNVKSPTYTLVE-EYNI-AGKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T-CCSCCCCCTTTCEE-EEEE-TTEEEEEEECT-TCSCT
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C-CCCeEEECCEeeee-eccC-CCcceeccccc-cCCcH
Confidence 4567999999999999999999999999999999999988 5 58999999986532 1111 12799998888 88986
Q ss_pred HHHHHcCCcc
Q psy13765 127 NVMSLLGLDE 136 (606)
Q Consensus 127 ~~l~~~gl~~ 136 (606)
+-+..+|+.+
T Consensus 93 e~l~~~g~~~ 102 (158)
T 1htw_A 93 EELEFMGIRD 102 (158)
T ss_dssp THHHHSTHHH
T ss_pred HHHHHcChHh
Confidence 6666677654
No 126
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.42 E-value=1e-13 Score=128.85 Aligned_cols=96 Identities=18% Similarity=0.278 Sum_probs=72.7
Q ss_pred ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcc--EEEECCccCChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG--QILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN 127 (606)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G--~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~ 127 (606)
.+|+++ +|+.++|+||||+|||||+++|++...+ +| .+++++.+....
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~~~~~~----------------------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAASMPLT----------------------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETTTSCCC-----------------------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHHHhhHH-----------------------
Confidence 467776 8999999999999999999999997643 45 555554322100
Q ss_pred HHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCH
Q psy13765 128 VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207 (606)
Q Consensus 128 ~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~ 207 (606)
+++.+ |++|++|||++ +|.
T Consensus 79 ------------------------------~~~~~------------------------------~~lLilDE~~~-~~~ 97 (149)
T 2kjq_A 79 ------------------------------DAAFE------------------------------AEYLAVDQVEK-LGN 97 (149)
T ss_dssp ------------------------------GGGGG------------------------------CSEEEEESTTC-CCS
T ss_pred ------------------------------HHHhC------------------------------CCEEEEeCccc-cCh
Confidence 11223 99999999998 666
Q ss_pred HHHHHHHHHHHHHHhCCCE-EEEEecCCch
Q psy13765 208 QSCSQCIKLLKMISQQGRT-IICTIHQPSA 236 (606)
Q Consensus 208 ~~~~~i~~~l~~l~~~g~t-ii~~~H~~~~ 236 (606)
..+..+.+++.++.++|++ +|+++|.+..
T Consensus 98 ~~~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 98 EEQALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 6688899999998888888 8899986543
No 127
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.40 E-value=1.5e-15 Score=152.17 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=97.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHh---CCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHH-cCCcc
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLS---GYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSL-LGLDE 136 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~---g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~-~gl~~ 136 (606)
++++++|+||||||||||+++|+ |+..+ ..|+|.++|.+.. ....+.+.+++|+..+.+..++.+.+.. +.-..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~-~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL-SSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE-EHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe-cHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999 98765 4788888775432 1233445566788777787777665543 21000
Q ss_pred ccCCccccCChHHHHHHHHHHHHhcCCccc-c------------cCCCCCCCCchhhhHHHHHHhh-hcCCcEEEEe---
Q psy13765 137 SQNTRSSQLSGGQKKRLSIALELINNPRVM-F------------LDEPTTSNPNDQKKRLSIALEL-INNPRVMFLD--- 199 (606)
Q Consensus 137 ~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~-~------------~de~~~~~s~g~~krl~IA~aL-~~~P~lllLD--- 199 (606)
...-...+.+..+.|.-.+ ..+..++++ . .+.+...+|| |+ +++ +.+|++++||
T Consensus 104 ~~~~il~g~~~~~~~~~~l--~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEAL--DKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp TSCEEEESCCCSHHHHHHH--HTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred CCeEEEECCCCCHHHHHHH--HhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 0000011122222211111 111334421 2 2334445666 55 677 9999999999
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHhCC
Q psy13765 200 -EPTTGLDSQSCSQCIKLLKMISQQG 224 (606)
Q Consensus 200 -EPTsgLD~~~~~~i~~~l~~l~~~g 224 (606)
|||+|||..+...+.+.++++.+++
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999999887653
No 128
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.37 E-value=7.6e-13 Score=140.91 Aligned_cols=84 Identities=27% Similarity=0.427 Sum_probs=68.4
Q ss_pred cccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcC-CcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy13765 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINN-PRVMFLDEPTTGLDSQSCSQCIKLLKMI 220 (606)
Q Consensus 142 ~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~-P~lllLDEPTsgLD~~~~~~i~~~l~~l 220 (606)
+..+||||+||+++|.. +++|++|+.+ |++|+|||||+|||+..+..+.+.|+++
T Consensus 278 ~~~lS~G~~~~~~lal~------------------------la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~ 333 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLR------------------------LAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV 333 (371)
T ss_dssp GGGSCHHHHHHHHHHHH------------------------HHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred hHhcCHHHHHHHHHHHH------------------------HHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh
Confidence 34566777666666542 3578999999 9999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCchHHHhhcceeeeec-CCc
Q psy13765 221 SQQGRTIICTIHQPSATLFQMFDQVYLLS-GGQ 252 (606)
Q Consensus 221 ~~~g~tii~~~H~~~~~i~~~~D~v~~L~-~G~ 252 (606)
.+ +.+||++||++. +...+|++++|+ +|.
T Consensus 334 ~~-~~~vi~~th~~~--~~~~~d~~~~l~k~~~ 363 (371)
T 3auy_A 334 KS-IPQMIIITHHRE--LEDVADVIINVKKDGN 363 (371)
T ss_dssp CS-CSEEEEEESCGG--GGGGCSEEEEEEESSS
T ss_pred cc-CCeEEEEEChHH--HHhhCCEEEEEEecCC
Confidence 43 569999999975 468999999996 443
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.36 E-value=8.7e-14 Score=151.89 Aligned_cols=177 Identities=17% Similarity=0.147 Sum_probs=108.9
Q ss_pred ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-------hh--hcccEEEEccCCCCCCC
Q psy13765 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-------NA--FRRVSCYIQQDDRLQPL 122 (606)
Q Consensus 52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-------~~--~~~~~~yv~Q~~~l~~~ 122 (606)
-+++|+++++|++++|+||||||||||+++|+|++.+ .+|+|.++|.+... .. .++.++|++|+..+.+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~-~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ-QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh-cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 4689999999999999999999999999999998765 48999998765321 12 25679999999888887
Q ss_pred CcHHHHHHHc---CCcc-ccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhh-cCC-cEE
Q psy13765 123 LTIENVMSLL---GLDE-SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI-NNP-RVM 196 (606)
Q Consensus 123 ltv~~~l~~~---gl~~-~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~-~~P-~ll 196 (606)
+++.+.+... +.+. ..|+- +.+.. .. .+..+ -+|++.+++++. ..| .+|
T Consensus 362 ~tV~e~l~~a~~~~~DvVLIDTa-Grl~~-~~---~lm~E--------------------L~kiv~iar~l~~~~P~evL 416 (503)
T 2yhs_A 362 SVIFDAIQAAKARNIDVLIADTA-GRLQN-KS---HLMEE--------------------LKKIVRVMKKLDVEAPHEVM 416 (503)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCC-CSCCC-HH---HHHHH--------------------HHHHHHHHHTTCTTCSSEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCC-Cccch-hh---hHHHH--------------------HHHHHHHHHHhccCCCCeeE
Confidence 7876655432 1111 11211 11100 00 00001 134555666543 346 456
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcceeeeec--CCcEEEEcChhHH
Q psy13765 197 FLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIHQPSATLFQMFDQVYLLS--GGQCLYQGATDQL 262 (606)
Q Consensus 197 lLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~--~G~~~~~G~~~~~ 262 (606)
|...||+|.|.. +.++.+.+ -|.|.+++||- +. ..+..+.+-++. +..+.|.|.-+.+
T Consensus 417 LvLDattGq~al------~~ak~f~~~~~itgvIlTKL-D~-takgG~~lsi~~~~~~PI~fig~Ge~v 477 (503)
T 2yhs_A 417 LTIDASTGQNAV------SQAKLFHEAVGLTGITLTKL-DG-TAKGGVIFSVADQFGIPIRYIGVGERI 477 (503)
T ss_dssp EEEEGGGTHHHH------HHHHHHHHHTCCSEEEEECG-GG-CSCCTHHHHHHHHHCCCEEEEECSSSG
T ss_pred EEecCcccHHHH------HHHHHHHhhcCCCEEEEEcC-CC-cccccHHHHHHHHHCCCEEEEecCCCh
Confidence 555588886543 44555554 48899999994 22 223334333333 4467777765443
No 130
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.35 E-value=3.7e-15 Score=155.60 Aligned_cols=142 Identities=12% Similarity=0.071 Sum_probs=87.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCCCC-------CCCccEEEECCccCCh------------------hhhcccEEEE---
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGYRS-------NGVTGQILTNGHSRNI------------------NAFRRVSCYI--- 113 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~~~-------~~~~G~I~~~G~~~~~------------------~~~~~~~~yv--- 113 (606)
=++++|+|+||||||||+|.|.|... .+..|+|.+||.+... .++++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 36899999999999999999999852 2258999999975421 2344556666
Q ss_pred ccCCCCCCCCcH---------HHHHHHc-CCcc-----ccCCccc--cCChHHHHHHHHHHHHhcCCcccccCCCCCCCC
Q psy13765 114 QQDDRLQPLLTI---------ENVMSLL-GLDE-----SQNTRSS--QLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176 (606)
Q Consensus 114 ~Q~~~l~~~ltv---------~~~l~~~-gl~~-----~~~~~~~--~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s 176 (606)
+|+..+++..++ ..++..+ .-.. ..+..+. ++...+++.. .+|
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~--------------------~ls 143 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN--------------------QFT 143 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH--------------------HCH
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh--------------------hch
Confidence 566555444432 1221111 0000 0000000 1111222211 246
Q ss_pred chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
+||+||+..+++++.+|+++ ||| .++.+.+++++ .+.||++++|++.
T Consensus 144 ~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 144 IAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp HHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred HHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 66777766677777778877 888 67888888875 5899999999865
No 131
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.34 E-value=9.3e-15 Score=139.10 Aligned_cols=100 Identities=12% Similarity=0.132 Sum_probs=61.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCC--CccEEEECCccC-C-----hhhhc-ccEE----EEccCCCCCCC-----C-
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGYRSNG--VTGQILTNGHSR-N-----INAFR-RVSC----YIQQDDRLQPL-----L- 123 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~~~~~--~~G~I~~~G~~~-~-----~~~~~-~~~~----yv~Q~~~l~~~-----l- 123 (606)
++++|+||||||||||+++|+|++.+. ..|.|.+||.+. + .+.+| +.+| +++|+..++-. .
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~~~ 82 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEEG 82 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChhhh
Confidence 589999999999999999999987542 279999999762 2 23455 4566 88998765511 1
Q ss_pred -cHHHHHHH-cCCccccCCcc-ccCChHHHHHHHHHHHHhcCCcc
Q psy13765 124 -TIENVMSL-LGLDESQNTRS-SQLSGGQKKRLSIALELINNPRV 165 (606)
Q Consensus 124 -tv~~~l~~-~gl~~~~~~~~-~~lSgGqrqRv~ia~~L~~~~~~ 165 (606)
.+++.++. +. -.|+.+ .++|||||||++|||+++.+|++
T Consensus 83 a~l~~~i~~~l~---g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 83 NDLDWIYERYLS---DYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp TCHHHHHHHHTT---TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred hCHHHHHHhhCC---CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 23344433 21 122222 23777777777777777776654
No 132
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.32 E-value=5.1e-13 Score=141.05 Aligned_cols=107 Identities=20% Similarity=0.216 Sum_probs=68.4
Q ss_pred cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCccEEEEC-CccCChhhhcccEEEEccCCCCCCCCcHH--
Q psy13765 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-NGVTGQILTN-GHSRNINAFRRVSCYIQQDDRLQPLLTIE-- 126 (606)
Q Consensus 51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~-~~~~G~I~~~-G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~-- 126 (606)
-+++++.. .+|++++|+||||||||||+|+|+|... + .+|+|.++ |+... ...++.+++++|+..+++..++.
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~-~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI-LTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC-CCC--------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc-ccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh
Confidence 45666664 4899999999999999999999999976 6 58999987 65432 23456789999998777765552
Q ss_pred ---------------HHHHHcCCccccCCccccCChHHHHHHHHHHHHhc
Q psy13765 127 ---------------NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN 161 (606)
Q Consensus 127 ---------------~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~ 161 (606)
++++.+|+.+..+....++| ||+||+++|++++.
T Consensus 282 ~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~ 330 (358)
T 2rcn_A 282 GLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAIA 330 (358)
T ss_dssp CCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSC
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCC
Confidence 23344455555555566666 66666666655543
No 133
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.31 E-value=2.6e-12 Score=137.96 Aligned_cols=149 Identities=10% Similarity=0.121 Sum_probs=91.6
Q ss_pred EEEeCCeEEEEECCCCCCHHHHHHHH--hCCCCCC----CccEEEECCccC-Chhh---hcccEEEEccCCCCCCCCcHH
Q psy13765 57 GRFPSNQLIAIMGPSGAGKSSLLDVL--SGYRSNG----VTGQILTNGHSR-NINA---FRRVSCYIQQDDRLQPLLTIE 126 (606)
Q Consensus 57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L--~g~~~~~----~~G~I~~~G~~~-~~~~---~~~~~~yv~Q~~~l~~~ltv~ 126 (606)
+-+++|++++|+||||||||||++.| .+..++. ..+.+++++... .... +.+.+++.+|
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~----------- 241 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD----------- 241 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----------
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-----------
Confidence 57999999999999999999999944 5665431 234788887642 2211 2233333322
Q ss_pred HHHHHcCCccccCCccccCChHH--HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCC
Q psy13765 127 NVMSLLGLDESQNTRSSQLSGGQ--KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTG 204 (606)
Q Consensus 127 ~~l~~~gl~~~~~~~~~~lSgGq--rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsg 204 (606)
++++.+-+ .....++ .+.+..+.+++. ..+|+++++||||+.
T Consensus 242 ~vleni~~--------~~~~~~~~~~~~l~~~~~~l~----------------------------~~~~~llVIDs~t~~ 285 (400)
T 3lda_A 242 DALNNVAY--------ARAYNADHQLRLLDAAAQMMS----------------------------ESRFSLIVVDSVMAL 285 (400)
T ss_dssp HHHHTEEE--------EECCSHHHHHHHHHHHHHHHH----------------------------HSCEEEEEEETGGGG
T ss_pred hHhhcEEE--------eccCChHHHHHHHHHHHHHHH----------------------------hcCCceEEecchhhh
Confidence 22221111 1112222 233332222221 135999999999999
Q ss_pred CCHHHH------------HHHHHHHHHHHhC-CCEEEEEecCCc------------------hHHHhhcceeeeecCCc
Q psy13765 205 LDSQSC------------SQCIKLLKMISQQ-GRTIICTIHQPS------------------ATLFQMFDQVYLLSGGQ 252 (606)
Q Consensus 205 LD~~~~------------~~i~~~l~~l~~~-g~tii~~~H~~~------------------~~i~~~~D~v~~L~~G~ 252 (606)
+|+... .++++.|++++++ |.|||+++|... ..+...+|.++.|++|+
T Consensus 286 ~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 286 YRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp CC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 996543 6688888888775 999999999821 23456789999997653
No 134
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.31 E-value=4e-13 Score=140.70 Aligned_cols=142 Identities=13% Similarity=0.083 Sum_probs=92.0
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-------hhhcc--cEEEEccCCCCCCCCcHHHHH
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-------NAFRR--VSCYIQQDDRLQPLLTIENVM 129 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~--~~~yv~Q~~~l~~~ltv~~~l 129 (606)
.++|++++|+||||||||||++.|+|+..+ ..|+|.++|.+... ..+++ .+.+++|+..+.|.+++.+.+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~-~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN-HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 368999999999999999999999998765 48999999976431 11233 355999999888888886655
Q ss_pred HHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCC-C-CchhhhHHHHHHhhhcCCcEEEEeCCCCCCCH
Q psy13765 130 SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS-N-PNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207 (606)
Q Consensus 130 ~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~-~-s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~ 207 (606)
.... . .+.+++++|.+... . ..=.++.-.|++++..++.+++||.+|.
T Consensus 205 ~~~~-~-------------------------~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---- 254 (328)
T 3e70_C 205 QHAK-A-------------------------RGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---- 254 (328)
T ss_dssp HHHH-H-------------------------HTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT----
T ss_pred HHHH-h-------------------------ccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH----
Confidence 4310 0 11122222221110 0 0001111236677776688888885553
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCC
Q psy13765 208 QSCSQCIKLLKMISQ-QGRTIICTIHQP 234 (606)
Q Consensus 208 ~~~~~i~~~l~~l~~-~g~tii~~~H~~ 234 (606)
.++++.++.+.+ .+.|+|++||..
T Consensus 255 ---~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 ---NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp ---THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred ---HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 355666777764 489999999964
No 135
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=1.8e-12 Score=136.07 Aligned_cols=182 Identities=12% Similarity=0.106 Sum_probs=90.8
Q ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCccEEEECCccCC-hhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCcc
Q psy13765 65 IAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRN-INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRS 142 (606)
Q Consensus 65 ~aIiGpsGaGKSTLL~~L~g-~~~~~~~G~I~~~G~~~~-~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~ 142 (606)
+.|.||||+|||||+++|++ +..+ ..|++.++|.+.. ....+..+++++|.+.+.-... +.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~-~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-- 101 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP-GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--------------DM-- 101 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT-TCCC------------------CCEECSSEEEECCC------------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC-CCCeEEecceeecccccccceeeeecccceEEecHh--------------hc--
Confidence 89999999999999999999 5554 4799999987543 1222456788888764321100 00
Q ss_pred ccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy13765 143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ 222 (606)
Q Consensus 143 ~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~ 222 (606)
+.-.+.+-+. +...+.....+ ++.. .+|+ +..+|+++++|||++ ||..++..+.+.+.+..
T Consensus 102 ~~~~~~~~~~--~i~~~~~~~~~---~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~- 162 (354)
T 1sxj_E 102 GNNDRIVIQE--LLKEVAQMEQV---DFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS- 162 (354)
T ss_dssp --CCHHHHHH--HHHHHTTTTC---------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-
T ss_pred CCcchHHHHH--HHHHHHHhccc---cccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-
Confidence 0000000000 01111111000 0000 1111 455699999999999 99999999999998764
Q ss_pred CCCEEEEEecCCchHHHhhcceeeeecCCcEEEEcCh--hHHHHHHH----hCCCCCCCCCChHHHHHHHhcC
Q psy13765 223 QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT--DQLVNYLS----SVNLPCPKYHNPADFVIELASG 289 (606)
Q Consensus 223 ~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~~~~G~~--~~~~~~f~----~~g~~~~~~~~~ad~~~~~~~~ 289 (606)
.+.++|+++|++....-.+.+|+ ..+...++ +++.++.+ ..|...+. ....+.+.+...+
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~l~~i~~~~~G 228 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQC------LLIRCPAPSDSEISTILSDVVTNERIQLET-KDILKRIAQASNG 228 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTS------EEEECCCCCHHHHHHHHHHHHHHHTCEECC-SHHHHHHHHHHTT
T ss_pred CCCEEEEEeCCHHHHHHHHHhhc------eEEecCCcCHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHcCC
Confidence 36899999999874332333443 33444443 45555443 33443220 2334555555544
No 136
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.30 E-value=4.5e-14 Score=148.57 Aligned_cols=179 Identities=11% Similarity=0.127 Sum_probs=116.5
Q ss_pred EEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-----
Q psy13765 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----- 103 (606)
Q Consensus 29 l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~----- 103 (606)
|+.+|+++.+ +.+.+|+++|+++++|++++|+||||||||||+|+|+|+..+ .+|+|.+.|.+...
T Consensus 30 ie~~~~~~~~--------~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~-~~g~v~i~~~d~~~~~~~~ 100 (337)
T 2qm8_A 30 AESRRADHRA--------AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA-AGHKVAVLAVDPSSTRTGG 100 (337)
T ss_dssp HTCSSHHHHH--------HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECGGGGSSCC
T ss_pred HeeCCccccc--------ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh-CCCEEEEEEEcCccccccc
Confidence 4556665542 346799999999999999999999999999999999998765 48999999865421
Q ss_pred --hhhcccEEEEccCCCCCCCCc-------------HHHH--HHH----------cCCcc-------ccCCc--cccCCh
Q psy13765 104 --NAFRRVSCYIQQDDRLQPLLT-------------IENV--MSL----------LGLDE-------SQNTR--SSQLSG 147 (606)
Q Consensus 104 --~~~~~~~~yv~Q~~~l~~~lt-------------v~~~--l~~----------~gl~~-------~~~~~--~~~lSg 147 (606)
...++.+++++|++.+++..+ .+.+ ++. .|+.. ..|.. +...+.
T Consensus 101 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~ 180 (337)
T 2qm8_A 101 SILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGA 180 (337)
T ss_dssp CSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC
T ss_pred chHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCC
Confidence 124567899999988876421 1221 111 11111 00100 001122
Q ss_pred HH-HHHHHHHHHHhcCCcccccCC----CCCCCCchhhhHHHHHHhhhc------CCcEEEEeCCCCCCCHHHHHHHHHH
Q psy13765 148 GQ-KKRLSIALELINNPRVMFLDE----PTTSNPNDQKKRLSIALELIN------NPRVMFLDEPTTGLDSQSCSQCIKL 216 (606)
Q Consensus 148 Gq-rqRv~ia~~L~~~~~~~~~de----~~~~~s~g~~krl~IA~aL~~------~P~lllLDEPTsgLD~~~~~~i~~~ 216 (606)
|+ .|.+. ..+...++++++.. +....|+|+++++..|++++. +|++++ ||++|.....++.+.
T Consensus 181 ~~~~~~i~--~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~ 254 (337)
T 2qm8_A 181 GDELQGIK--KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSR 254 (337)
T ss_dssp ------CC--TTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHH
T ss_pred cccHHHHH--HHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHH
Confidence 22 11110 00112245554422 223467889999999999987 688887 999999999999999
Q ss_pred HHHHHh
Q psy13765 217 LKMISQ 222 (606)
Q Consensus 217 l~~l~~ 222 (606)
|.++.+
T Consensus 255 I~~~~~ 260 (337)
T 2qm8_A 255 IEDHRS 260 (337)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 137
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.28 E-value=8.3e-13 Score=142.46 Aligned_cols=168 Identities=18% Similarity=0.207 Sum_probs=95.8
Q ss_pred ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHH
Q psy13765 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSL 131 (606)
Q Consensus 52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~ 131 (606)
-+++++++++|+.++|+|+|||||||||++|+|..+ .+.+.+.. .....+++|.+++. ..+++. +.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~---Dt 212 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLA---DI 212 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-------EECCCTTC--SSCCEEEEEECSSS--CEEEEE---EC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-------cccCcccc--eecceeeEEEecCc--ceEEEE---ec
Confidence 479999999999999999999999999999999743 23333221 22344666666541 001100 00
Q ss_pred cCCccccCCccccCChHHHHHHHHHHHHhcCCccc--cc---CCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCC
Q psy13765 132 LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FL---DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206 (606)
Q Consensus 132 ~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~~---de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD 206 (606)
.|+...... ...+.. +..| . +.+.+.+ +. ++|...+|+|+++++.+|++|+.+|.++++ +++|
T Consensus 213 pGli~~a~~-~~~L~~-~fl~-----~-~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlD 280 (416)
T 1udx_A 213 PGIIEGASE-GKGLGL-EFLR-----H-IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVD 280 (416)
T ss_dssp CCCCCCGGG-SCCSCH-HHHH-----H-HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCT
T ss_pred cccccchhh-hhhhhH-HHHH-----H-HHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCC
Confidence 111110000 001110 0000 0 1111211 11 345555667777777777777778999999 9999
Q ss_pred HHHHHHHHHHHHH-HHhCCCEEEEEecCCchHHHhhcceee
Q psy13765 207 SQSCSQCIKLLKM-ISQQGRTIICTIHQPSATLFQMFDQVY 246 (606)
Q Consensus 207 ~~~~~~i~~~l~~-l~~~g~tii~~~H~~~~~i~~~~D~v~ 246 (606)
...+ ..++.+++ +.+.|.+++.+|..-...+.++++.+.
T Consensus 281 l~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 281 LLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp TSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred hhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 9877 44444444 444577777666443445666666654
No 138
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.24 E-value=2.6e-14 Score=158.17 Aligned_cols=178 Identities=11% Similarity=0.132 Sum_probs=110.2
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc-CChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSCYIQQDDRLQPLLTIEN 127 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~-~~~~~~~~~~~yv~Q~~~l~~~ltv~~ 127 (606)
..+++++++.+++|+.++|+|||||||||||++|+|+.++ .+|.|.++|.. .... ....++++.|........+..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~-~~giitied~~E~~~~-~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP-DAKVVSIEDTREIKLY-HENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT-TCCEEEEESSCCCCCC-CSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC-CCCEEEEcCcccccCC-CCCeEEEEeecccccCCcCHHH
Confidence 4578999999999999999999999999999999999876 58999999864 2211 1344666666554223345544
Q ss_pred HHHHcCCccccC-CccccCChHHHHHHHHHHHHhc--------------------CCcc------c-ccC---CCCCCCC
Q psy13765 128 VMSLLGLDESQN-TRSSQLSGGQKKRLSIALELIN--------------------NPRV------M-FLD---EPTTSNP 176 (606)
Q Consensus 128 ~l~~~gl~~~~~-~~~~~lSgGqrqRv~ia~~L~~--------------------~~~~------~-~~d---e~~~~~s 176 (606)
.+... |....| -.++++.+.|-..+ +..+... ++.. . .+| .....+|
T Consensus 325 ~l~~~-LR~~PD~iivgEir~~E~~~~-l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 325 LLRAA-LRQRPDYIIVGEVRGREAQTL-FQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHTT-GGGCCSEEEESCCCSTHHHHH-HHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHh-hccCCCeEEeCCcCHHHHHHH-HHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 44321 111111 11234444442211 1111101 1100 0 111 1223468
Q ss_pred chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCchHHHhhcc
Q psy13765 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIIC--TIHQPSATLFQMFD 243 (606)
Q Consensus 177 ~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~--~~H~~~~~i~~~~D 243 (606)
+||+||+.+|.+ | |+|||+.+...+.+.+.++.++|.|+++ ++|+.+ ++.+.|+
T Consensus 403 ~G~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEVN-----------E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp SSCEEEEEEEEE-----------E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHT
T ss_pred CCCceEEEEEEE-----------E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcC
Confidence 899888776521 7 9999998887777777777667889885 899876 4555554
No 139
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.14 E-value=6.1e-12 Score=124.62 Aligned_cols=59 Identities=20% Similarity=0.128 Sum_probs=43.8
Q ss_pred CCcEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCCchH-------HHhhcceeeeecC
Q psy13765 192 NPRVMFLDEPTTGL--DSQSCSQCIKLLKMIS-QQGRTIICTIHQPSAT-------LFQMFDQVYLLSG 250 (606)
Q Consensus 192 ~P~lllLDEPTsgL--D~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~-------i~~~~D~v~~L~~ 250 (606)
+|+++++|||++.+ |+....+.+..+.+++ +.|.||++++|..... +.+.+|.++.|+.
T Consensus 128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 59999999999988 6655566666666664 4699999999986531 4577899999964
No 140
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.13 E-value=5.2e-11 Score=130.07 Aligned_cols=181 Identities=15% Similarity=0.171 Sum_probs=122.0
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcc-EEEECCccCChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG-QILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN 127 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G-~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~ 127 (606)
-..|+++.+-+++|+++.|.|+||+|||||+..+++..... .| .|.+.+.+.+..++.+ .
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~s~~~l~~------------------r 250 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEMSAQQLVM------------------R 250 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSSCHHHHHH------------------H
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCCHHHHHH------------------H
Confidence 34688888889999999999999999999999998754321 23 3444333322222111 1
Q ss_pred HH-HHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhh--cCCcEEEEeCCCCC
Q psy13765 128 VM-SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI--NNPRVMFLDEPTTG 204 (606)
Q Consensus 128 ~l-~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~--~~P~lllLDEPTsg 204 (606)
++ ...|..... -+-+.++..+.+|+.-|...+...++.+.|. ..+|.+|.+ +.++.+. .+|+++++|+++..
T Consensus 251 ~~~~~~~~~~~~-l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~--~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 251 MLCAEGNINAQN-LRTGKLTPEDWGKLTMAMGSLSNAGIYIDDT--PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp HHHHHHTCCHHH-HHTSCCCHHHHHHHHHHHHHHHSSCEEEECC--TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred HHHHHcCCCHHH-HhcCCCCHHHHHHHHHHHHHHhcCCEEEECC--CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 11 112222100 0123578888888888777777767666664 467788776 5666665 68999999999997
Q ss_pred CCH--------HHHHHHHHHHHHHHhC-CCEEEEEec---------C--Cc-------hHHHhhcceeeeecCCcE
Q psy13765 205 LDS--------QSCSQCIKLLKMISQQ-GRTIICTIH---------Q--PS-------ATLFQMFDQVYLLSGGQC 253 (606)
Q Consensus 205 LD~--------~~~~~i~~~l~~l~~~-g~tii~~~H---------~--~~-------~~i~~~~D~v~~L~~G~~ 253 (606)
.++ ....++.+.|+.++++ |.+||+++| + |. ..+...+|.|++|..++.
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 743 3346777888888865 999999999 2 43 136678999999987653
No 141
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.12 E-value=2.2e-13 Score=132.25 Aligned_cols=57 Identities=14% Similarity=0.234 Sum_probs=43.6
Q ss_pred HHH-hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 185 IAL-ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 185 IA~-aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
+|+ +++.+|++++|||||+++|..+...+.+.|++..++ +...|.+ ..+|+++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 344 677779999999999999999999999998887653 2334621 56899988764
No 142
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.11 E-value=1.1e-12 Score=140.24 Aligned_cols=160 Identities=14% Similarity=0.138 Sum_probs=108.4
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----------CCCccEEEECCccCCh--h--hhcccE---EEEccCCCC
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-----------NGVTGQILTNGHSRNI--N--AFRRVS---CYIQQDDRL 119 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~-----------~~~~G~I~~~G~~~~~--~--~~~~~~---~yv~Q~~~l 119 (606)
.+++|+.++|+|+||||||||+|+|+|... .+..|.|.++|...+. . .-++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 568999999999999999999999999321 1257999998853211 0 112222 366676666
Q ss_pred CCCCcHH-----HHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCccc--c----cCCCCCCCCchhhhHHHHHHh
Q psy13765 120 QPLLTIE-----NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--F----LDEPTTSNPNDQKKRLSIALE 188 (606)
Q Consensus 120 ~~~ltv~-----~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~--~----~de~~~~~s~g~~krl~IA~a 188 (606)
.+..+.. ..+..+ .+.+.+ + -|.+..+++++.
T Consensus 96 ~~~~s~~e~L~~~fl~~i----------------------------r~~d~il~Vvd~~~d~~i~~v~~~~--------- 138 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHV----------------------------RAVDAIYQVVRAFDDAEIIHVEGDV--------- 138 (392)
T ss_dssp CCCCCSSSSSCHHHHHHH----------------------------TTCSEEEEEEECCCTTCSSCCSSSS---------
T ss_pred ccCCcHHHHHHHHHHHHH----------------------------HHHHHHHHHHhccccceeeeecccc---------
Confidence 6554421 111111 111110 0 022222333321
Q ss_pred hhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCchHHHhhcceee-eecCC-cEEEEcChh
Q psy13765 189 LINNP--RVMFLDEPTTGLDSQSCSQCIKLLKMI-SQQGRTIICTIHQPSATLFQMFDQVY-LLSGG-QCLYQGATD 260 (606)
Q Consensus 189 L~~~P--~lllLDEPTsgLD~~~~~~i~~~l~~l-~~~g~tii~~~H~~~~~i~~~~D~v~-~L~~G-~~~~~G~~~ 260 (606)
+| +++++|||+.++|+.......+.++++ ++.|.|++ +|+.. .+.++||++. +|.+| ++++.|+.+
T Consensus 139 ---dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 139 ---DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred ---CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCC
Confidence 58 999999999999999999999999988 66677864 89865 5789999999 99999 988877653
No 143
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.08 E-value=2.6e-13 Score=140.95 Aligned_cols=92 Identities=12% Similarity=0.160 Sum_probs=73.4
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEE-------------------eCCeEEEEECCCCCCHHHHHHHHhCCCC-
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRF-------------------PSNQLIAIMGPSGAGKSSLLDVLSGYRS- 87 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~aIiGpsGaGKSTLL~~L~g~~~- 87 (606)
.|+++||++.| .++++++++.+ ++|++++|+||||||||||+++|+|+..
T Consensus 37 ~i~~~~v~~~y----------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~ 106 (308)
T 1sq5_A 37 DLSLEEVAEIY----------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR 106 (308)
T ss_dssp TCCHHHHHHTH----------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred ccchHhHHHHH----------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 37778888654 35899999988 8999999999999999999999999765
Q ss_pred -CCCccEEEE---CCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHc
Q psy13765 88 -NGVTGQILT---NGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLL 132 (606)
Q Consensus 88 -~~~~G~I~~---~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~ 132 (606)
+ .+|+|.+ ||..... ..++.++++ |+..+++.+++.+.+..+
T Consensus 107 ~~-~~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 107 WP-EHRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp ST-TCCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CC-CCCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 4 4899999 8876543 334567888 877777888887766543
No 144
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.08 E-value=2.2e-13 Score=133.02 Aligned_cols=43 Identities=30% Similarity=0.429 Sum_probs=34.0
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CccEEEECCccC
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG--VTGQILTNGHSR 101 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~--~~G~I~~~G~~~ 101 (606)
.++|++++|+||||||||||+++|+|+..+. ..|.|.++|...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 5799999999999999999999999986531 246666665443
No 145
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.06 E-value=1e-12 Score=141.91 Aligned_cols=136 Identities=17% Similarity=0.089 Sum_probs=84.8
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh-------hhhcccEEEEc-------
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI-------NAFRRVSCYIQ------- 114 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~~~yv~------- 114 (606)
+.+|+++ + .++|++++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.+++++
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~-~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~ 232 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS-SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAI 232 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC-TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHH
Confidence 3467777 4 389999999999999999999999998766 48999998876531 12334455655
Q ss_pred --cCCCCC--CC----CcHHHHHHHcCCccc-cCCccccCC-hHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH
Q psy13765 115 --QDDRLQ--PL----LTIENVMSLLGLDES-QNTRSSQLS-GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184 (606)
Q Consensus 115 --Q~~~l~--~~----ltv~~~l~~~gl~~~-~~~~~~~lS-gGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~ 184 (606)
|++... +. .|+.+.+....-.+. ..+ ...-+ ..-.+|+. .+ .-++. .....|||||+||
T Consensus 233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t-lh~~~~~~~i~rL~---~l-gl~~~----~~~~~LSgg~~QR-- 301 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST-LHTNTAVGAVTRLR---DM-GIEPF----LISSSLLGVLAQR-- 301 (418)
T ss_dssp GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE-ECCSSSHHHHHHHH---HH-TCCHH----HHHHHEEEEEEEE--
T ss_pred hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc-cchhhHHHHHHHHH---Hc-CCcHH----HHHHHHHHHHHHH--
Confidence 887652 33 467666654321110 000 01011 11122221 11 11111 1345689999999
Q ss_pred HHHhhhcCCcEEEE
Q psy13765 185 IALELINNPRVMFL 198 (606)
Q Consensus 185 IA~aL~~~P~lllL 198 (606)
||++|+.+|++..-
T Consensus 302 LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEECTTTCEEEE
T ss_pred hhhhhcCCCCccCC
Confidence 99999999999763
No 146
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.03 E-value=4.2e-11 Score=123.30 Aligned_cols=131 Identities=15% Similarity=0.112 Sum_probs=75.5
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHc---CCcc
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLL---GLDE 136 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~---gl~~ 136 (606)
+++.+++|.||||||||||.+.|++...+ .| . . ++.+.+|+||+.+++....+++.... ++..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~--~g------~-----~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~ 94 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME--KY------G-----G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQ 94 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--HH------G-----G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh--cC------C-----C-CceEEEeccccccCChHHHHHHhccccccchhh
Confidence 57899999999999999999999997643 22 0 1 34566679999887642222221110 0000
Q ss_pred ccCCccccCChHHHHHHHHHHHHhcCC-----cccccCCCCCCCCchhhhHHHHH--HhhhcCCcEEEEeCCCCCCCHHH
Q psy13765 137 SQNTRSSQLSGGQKKRLSIALELINNP-----RVMFLDEPTTSNPNDQKKRLSIA--LELINNPRVMFLDEPTTGLDSQS 209 (606)
Q Consensus 137 ~~~~~~~~lSgGqrqRv~ia~~L~~~~-----~~~~~de~~~~~s~g~~krl~IA--~aL~~~P~lllLDEPTsgLD~~~ 209 (606)
..+ .+...- ...-......|-..- .-.....-...+||||++|+.+| +++ +|+|+|+||||+++|+..
T Consensus 95 ~~g-~p~a~d--~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 95 GRG-LPGTHD--MKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSC-STTSBC--HHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hcc-CcchhH--HHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 000 011111 011111112222210 00111122345789999999987 555 899999999999999864
No 147
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.02 E-value=3.7e-10 Score=119.17 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=44.4
Q ss_pred CcEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCch---------------HHHh
Q psy13765 193 PRVMFLDEPTTGL----------DS---QSCSQCIKLLKMI----SQQGRTIICTIHQPSA---------------TLFQ 240 (606)
Q Consensus 193 P~lllLDEPTsgL----------D~---~~~~~i~~~l~~l----~~~g~tii~~~H~~~~---------------~i~~ 240 (606)
|+++++|||++.+ |+ ..++.+.+.++++ ++.|.|||++.|.... .+..
T Consensus 140 ~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~ 219 (349)
T 2zr9_A 140 LDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKF 219 (349)
T ss_dssp CSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHH
T ss_pred CCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhh
Confidence 9999999999988 33 2223445555555 3459999999996431 2556
Q ss_pred hcceeeeecCCcEEEEcC
Q psy13765 241 MFDQVYLLSGGQCLYQGA 258 (606)
Q Consensus 241 ~~D~v~~L~~G~~~~~G~ 258 (606)
.+|.++.++.++++..|+
T Consensus 220 ~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 220 YASVRLDVRRIETLKDGT 237 (349)
T ss_dssp HCSEEEEEEEEEEECSSS
T ss_pred ccceEEEEEEeeeeecCc
Confidence 889888888776654444
No 148
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.01 E-value=2.3e-13 Score=138.96 Aligned_cols=130 Identities=18% Similarity=0.232 Sum_probs=81.1
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hhhcccEEEEccCC-CCCCC
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NAFRRVSCYIQQDD-RLQPL 122 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~~~yv~Q~~-~l~~~ 122 (606)
+.+.+++++++.+++| ++|+||||||||||+++|+|... .|.|.++|.+... .+.++.+++++|+. ...|.
T Consensus 31 ~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~---~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 31 RNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG---LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT---CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred hCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC---CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 3456899999999999 99999999999999999999764 3799999976421 23345577777764 33444
Q ss_pred CcHHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCC
Q psy13765 123 LTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202 (606)
Q Consensus 123 ltv~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPT 202 (606)
+++.+-++.+.-. +...-+ +...|+ .++....+||||+||+.|++|+..+|++| |||+
T Consensus 106 i~~~Deid~~~~~-----r~~~~~-~~~~~~--------------~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPR-----RSDRET-GASVRV--------------VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC---------------CTTH--------------HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhcc-----cCCCcc-hHHHHH--------------HHHHHHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 3321111111100 000000 000010 11112236788888888999999999975 8886
Q ss_pred C
Q psy13765 203 T 203 (606)
Q Consensus 203 s 203 (606)
.
T Consensus 164 ~ 164 (274)
T 2x8a_A 164 L 164 (274)
T ss_dssp H
T ss_pred c
Confidence 4
No 149
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.00 E-value=4.6e-11 Score=123.66 Aligned_cols=123 Identities=13% Similarity=0.132 Sum_probs=71.6
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEE---CCccCCh--hhhc-ccEEEEccCCCCC-----CCCcHHH
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT---NGHSRNI--NAFR-RVSCYIQQDDRLQ-----PLLTIEN 127 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~---~G~~~~~--~~~~-~~~~yv~Q~~~l~-----~~ltv~~ 127 (606)
+.+|++++|+||||||||||+|+|+ ...+ .+|+|.+ +|++... ..++ +.+|||+|++.+. +.+|+++
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~-~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~e~ 239 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEEL-RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPRE 239 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCC-CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCGGG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhC-cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCHHH
Confidence 4579999999999999999999999 7766 5899999 8876532 1222 3689999998664 6788877
Q ss_pred HHHHcC-Ccc--ccCCccccCChHH-HHHHHHHHHHhcCCccc--ccCCCCCCCCchhhhHHHHHHh
Q psy13765 128 VMSLLG-LDE--SQNTRSSQLSGGQ-KKRLSIALELINNPRVM--FLDEPTTSNPNDQKKRLSIALE 188 (606)
Q Consensus 128 ~l~~~g-l~~--~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~--~~de~~~~~s~g~~krl~IA~a 188 (606)
+...++ +.. |.... ..+..| +.++.-|.+ .-.+- ..+.+...+||.++|+++|||+
T Consensus 240 l~~~f~~~~~~~c~~~~--~~~~~e~~~~v~~~l~---~~~L~~~~~~~~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 240 VRNYFREFLRYQCKYPD--CTHTNEPGCAVKEAVK---NGEISCERYKSYLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGCGGGHHHHHHSTT--CCSSSCTTCHHHHHHH---TTSSCHHHHHHHHHHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHccCCCCC--CCCCCCCCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 644433 000 10000 001111 122322222 22221 2344555689999999999974
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.94 E-value=3.9e-10 Score=116.87 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=38.0
Q ss_pred eeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc
Q psy13765 54 NLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS 100 (606)
Q Consensus 54 ~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~ 100 (606)
.+++..++|++++|+|||||||||+++.|++...+ ..|+|.+.+.+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D 141 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAAD 141 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEEEccc
Confidence 34556789999999999999999999999998754 36788887654
No 151
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.91 E-value=2.2e-09 Score=110.61 Aligned_cols=119 Identities=14% Similarity=0.141 Sum_probs=77.2
Q ss_pred eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHc
Q psy13765 53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLL 132 (606)
Q Consensus 53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~ 132 (606)
++++++ +|++++++|+||+||||++..|++...+ ..|+|.+.+.+........ | .....+..
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~~~~------q---------l~~~~~~~ 152 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAARE------Q---------LRLLGEKV 152 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHHHH------H---------HHHHHHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHhHHH------H---------HHHhcccC
Confidence 678888 9999999999999999999999998654 3688988876543211110 0 01122333
Q ss_pred CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC-CCCCCHHHHH
Q psy13765 133 GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP-TTGLDSQSCS 211 (606)
Q Consensus 133 gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP-TsgLD~~~~~ 211 (606)
|+....... ...-.+.+|.+ |+.+...+++++++||| +.|+|.....
T Consensus 153 ~l~~~~~~~--~~~p~~l~~~~------------------------------l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 153 GVPVLEVMD--GESPESIRRRV------------------------------EEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp TCCEEECCT--TCCHHHHHHHH------------------------------HHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred CeEEEEcCC--CCCHHHHHHHH------------------------------HHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 443221100 01122333444 44444455999999999 9999998888
Q ss_pred HHHHHHHHHH
Q psy13765 212 QCIKLLKMIS 221 (606)
Q Consensus 212 ~i~~~l~~l~ 221 (606)
++.+..+.+.
T Consensus 201 ~l~~~~~~~~ 210 (295)
T 1ls1_A 201 ELARLKEVLG 210 (295)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHhhhcC
Confidence 8877776653
No 152
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.88 E-value=4.9e-12 Score=125.20 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=22.9
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHh-CCCC
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS-GYRS 87 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~-g~~~ 87 (606)
.+..+++|+++++|++++|+||||||||||+++|+ |+.+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 46789999999999999999999999999999999 9863
No 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.87 E-value=2.4e-09 Score=110.46 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=88.6
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHH----cCCc
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSL----LGLD 135 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~----~gl~ 135 (606)
++|++++++||||+||||+++.|++...+ .+| +.+.++.+|.. ..+..+.+.. .|+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~~~gl~ 163 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML-EKH---------------KKIAFITTDTY---RIAAVEQLKTYAELLQAP 163 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH-TTC---------------CCEEEEECCCS---STTHHHHHHHHHTTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH-hcC---------------CEEEEEecCcc---cchHHHHHHHHHHhcCCC
Confidence 57999999999999999999999997643 135 23555555542 1222222222 2221
Q ss_pred cccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHH
Q psy13765 136 ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK 215 (606)
Q Consensus 136 ~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~ 215 (606)
... ..+. +.-+.+ |+ .+.+|+++|+| |+|+|+.....+.+
T Consensus 164 ~~~-----~~~~-~~l~~a------------------------------l~--~~~~~dlvIiD--T~G~~~~~~~~~~e 203 (296)
T 2px0_A 164 LEV-----CYTK-EEFQQA------------------------------KE--LFSEYDHVFVD--TAGRNFKDPQYIDE 203 (296)
T ss_dssp CCB-----CSSH-HHHHHH------------------------------HH--HGGGSSEEEEE--CCCCCTTSHHHHHH
T ss_pred eEe-----cCCH-HHHHHH------------------------------HH--HhcCCCEEEEe--CCCCChhhHHHHHH
Confidence 110 0111 111222 22 22569999999 99999877655555
Q ss_pred HHHHHH---hCCCEEEE-EecCCchHHHhhcceeeeecCCcEEEEcC-----hhHHHHHHHhCCCC
Q psy13765 216 LLKMIS---QQGRTIIC-TIHQPSATLFQMFDQVYLLSGGQCLYQGA-----TDQLVNYLSSVNLP 272 (606)
Q Consensus 216 ~l~~l~---~~g~tii~-~~H~~~~~i~~~~D~v~~L~~G~~~~~G~-----~~~~~~~f~~~g~~ 272 (606)
+.+-+. ..+.++++ ++|+.. ++.+.+|++..+..+.++...- ...+.+.....|.|
T Consensus 204 l~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giVltk~D~~~~~g~~~~~~~~~~~p 268 (296)
T 2px0_A 204 LKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKIG 268 (296)
T ss_dssp HHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEEEECTTTCSCCHHHHHHHHTCSCC
T ss_pred HHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEEEeCCCcccchhHHHHHHHHHCcC
Confidence 444332 12334444 478754 5778889887777777776431 12444555555544
No 154
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.86 E-value=9.5e-10 Score=120.30 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=47.0
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR 101 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~ 101 (606)
..+|+|+|+++++ |+++|+|||||||||||++|+|+.++ .+|+|.++|++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP-DLTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC-CTTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC-CCCEEEECCEEc
Confidence 4589999999999 99999999999999999999999876 589999999764
No 155
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.84 E-value=2.4e-11 Score=127.31 Aligned_cols=168 Identities=15% Similarity=0.201 Sum_probs=100.6
Q ss_pred cccccceeeeEEEeCC-------eEEEEECCCCCCHHHHHHHHhCCCCC---CCccEEEECCccCCh--hhh-cccEEEE
Q psy13765 47 EPKDVLKNLCGRFPSN-------QLIAIMGPSGAGKSSLLDVLSGYRSN---GVTGQILTNGHSRNI--NAF-RRVSCYI 113 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~G-------e~~aIiGpsGaGKSTLL~~L~g~~~~---~~~G~I~~~G~~~~~--~~~-~~~~~yv 113 (606)
+.+.+++++++.+++| +.++|.||||+|||||+++|+|.... ..+|.+..++.+... ... ++.+.++
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 4457899999999887 89999999999999999999997521 135655555433211 112 4568999
Q ss_pred ccCCCCCCCCcHHHHHHHcCCccccCCccccCChHH-HHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcC
Q psy13765 114 QQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINN 192 (606)
Q Consensus 114 ~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~~lSgGq-rqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~ 192 (606)
+|.+.+.+ ++++.+... ++......+ ++.|+ .+++. ..+....+...+.+...+|+|+|+|+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~-~~~~~~~i~--~~~~~~~~~i~---~~l~~~~li~at~~~~~Ls~~l~sR~~l~------ 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSA-IEDFQIDIM--IGKGPSAKSIR---IDIQPFTLVGATTRSGLLSSPLRSRFGII------ 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHH-HHTSCCCC--------------------CCCEEEEEESCGGGSCHHHHTTCSEE------
T ss_pred cchhhcCH--HHHHHHHHH-HHhccccee--eccCccccccc---ccCCCeEEEEecCCcccCCHHHHHhcCce------
Confidence 99888765 676665321 111100000 11122 22221 12222222234555567888888888644
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcce
Q psy13765 193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQ 244 (606)
Q Consensus 193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~ 244 (606)
.+||+.+..++.++|++.++. | +.|+++ .+..++++
T Consensus 175 ----------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~-~~~~ia~~ 211 (334)
T 1in4_A 175 ----------LELDFYTVKELKEIIKRAASLMD-----VEIEDA-AAEMIAKR 211 (334)
T ss_dssp ----------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHH-HHHHHHHT
T ss_pred ----------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHH-HHHHHHHh
Confidence 688999999999999988753 4 246643 34445543
No 156
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.82 E-value=1.1e-09 Score=113.11 Aligned_cols=61 Identities=18% Similarity=0.331 Sum_probs=40.0
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEE---CCccCCh--hhhc-ccEEEEccCCCC
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT---NGHSRNI--NAFR-RVSCYIQQDDRL 119 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~---~G~~~~~--~~~~-~~~~yv~Q~~~l 119 (606)
++.+|++++|+||||||||||+|+|+|+..+ .+|+|.+ +|+.... ..++ +.+|||+|++.+
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~-~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~ 231 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKL-RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF 231 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCC-C-------------CCCSCCEEECTTSCEEESSCSS
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccc-cccceecccCCCCCceeeeEEEEcCCCCEEEECcCC
Confidence 4567999999999999999999999999876 5899999 8876432 1122 358999999853
No 157
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.79 E-value=6.4e-10 Score=125.72 Aligned_cols=155 Identities=13% Similarity=0.131 Sum_probs=96.3
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHH
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIE 126 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~ 126 (606)
+...+++++++.+++|+.++|+||||+|||||+++|++..++...|.+.+++.+.+ .....++++++... +
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~--~~~p~i~~~p~g~~-------~ 115 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED--ENMPRIKTVPACQG-------R 115 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC--TTSCEEEEEETTHH-------H
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc--ccCCcEEEEecchH-------H
Confidence 45678999999999999999999999999999999999987644588999887653 23456778776431 1
Q ss_pred HHHHHc------------------CC--------cccc--CCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCch
Q psy13765 127 NVMSLL------------------GL--------DESQ--NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178 (606)
Q Consensus 127 ~~l~~~------------------gl--------~~~~--~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g 178 (606)
++++.. .+ .++. ....-.-.+-. ...|... +-.-.+..+.++.|
T Consensus 116 ~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~------~~~L~G~--~~~~~~~~g~~~~g 187 (604)
T 3k1j_A 116 RIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAH------AGALLGD--VRHDPFQSGGLGTP 187 (604)
T ss_dssp HHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCC------HHHHHCE--ECCCCC----CCCC
T ss_pred HHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCC------HHhcCce--EEechhhcCCcccc
Confidence 110000 00 0000 00000000000 0111111 00001112456777
Q ss_pred hhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy13765 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKM 219 (606)
Q Consensus 179 ~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~ 219 (606)
+++++..++....++.+||+||... |++.....+.+.|++
T Consensus 188 ~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 188 AHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 7888778888888899999999988 898888888777763
No 158
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.72 E-value=1.1e-09 Score=105.53 Aligned_cols=65 Identities=22% Similarity=0.193 Sum_probs=45.6
Q ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hhhcccEEEEccCCCCCCCCcH
Q psy13765 56 CGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NAFRRVSCYIQQDDRLQPLLTI 125 (606)
Q Consensus 56 s~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~~~yv~Q~~~l~~~ltv 125 (606)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++..... ...++.++|++|++..++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVK 68 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHh
Confidence 56788999999999999999999999999853 35666643221 2235668899998776655443
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.69 E-value=5.3e-11 Score=121.16 Aligned_cols=125 Identities=17% Similarity=0.311 Sum_probs=77.5
Q ss_pred ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhhhcccEEEEccCCC-CCCCC
Q psy13765 48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INAFRRVSCYIQQDDR-LQPLL 123 (606)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~~~~~~~yv~Q~~~-l~~~l 123 (606)
...+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+.. ....++.+++++|+.. ..+.+
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 346789999999999 89999999999999999999753 689999886421 1122344666777643 34444
Q ss_pred cH-HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcE
Q psy13765 124 TI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRV 195 (606)
Q Consensus 124 tv-~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~l 195 (606)
++ +|+ +.++.... ...+++....-.....++. .+||||+||+.|++++..+|++
T Consensus 136 ~~iDei-d~l~~~~~-----~~~~~~~~~~~~~~~~ll~------------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 136 VFIDEI-DAVGRKRG-----SGVGGGNDEREQTLNQLLV------------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEETH-HHHHCC-------------CHHHHHHHHHHHH------------HHTTCCTTCCEEEEEEESCTTS
T ss_pred Eehhhh-Hhhhcccc-----cccCCcchHHHHHHHHHHH------------HHhCCCCCCCEEEEEecCCchh
Confidence 43 333 22221110 0111111111122223332 2688999999999999999976
No 160
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.69 E-value=2.5e-08 Score=105.22 Aligned_cols=155 Identities=14% Similarity=0.098 Sum_probs=87.5
Q ss_pred cceeee--EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEE-EECCccCChhhhcccEEEEccCCCCCCCCcHHH
Q psy13765 51 VLKNLC--GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI-LTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN 127 (606)
Q Consensus 51 iL~~vs--~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I-~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~ 127 (606)
-|+.+- +-+++|+++.|.||||+|||||+..+++.... ..|.+ ++++.........+.+|+.+|+..+....++++
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~ 126 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ 126 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHH
Confidence 344433 36899999999999999999999999876432 23544 566544322223344555554433333333333
Q ss_pred HHHHcCCccccCCccccCChHHHHHHHHHHHHh--cCCcccccCCCCCCCC-------chhhhHHHHHHhhhcCCcEEEE
Q psy13765 128 VMSLLGLDESQNTRSSQLSGGQKKRLSIALELI--NNPRVMFLDEPTTSNP-------NDQKKRLSIALELINNPRVMFL 198 (606)
Q Consensus 128 ~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~--~~~~~~~~de~~~~~s-------~g~~krl~IA~aL~~~P~lllL 198 (606)
+ +.+++.++ .++++++.|+-..-.+ .|++++...|+++.
T Consensus 127 ~------------------------l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la-------- 174 (356)
T 3hr8_A 127 A------------------------LEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMS-------- 174 (356)
T ss_dssp H------------------------HHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHH--------
T ss_pred H------------------------HHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHH--------
Confidence 2 23333333 2444444444333322 13444444444432
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc---------------hHHHhhcceeeeecCC
Q psy13765 199 DEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPS---------------ATLFQMFDQVYLLSGG 251 (606)
Q Consensus 199 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~---------------~~i~~~~D~v~~L~~G 251 (606)
++++.|+.++++ |.|||++.|-.. ..+...+|-++.++.+
T Consensus 175 -------------~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~ 230 (356)
T 3hr8_A 175 -------------QALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRG 230 (356)
T ss_dssp -------------HHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEE
T ss_pred -------------HHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEec
Confidence 456666677664 889988877611 1244678888888753
No 161
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.67 E-value=6.4e-11 Score=118.66 Aligned_cols=129 Identities=18% Similarity=0.325 Sum_probs=79.0
Q ss_pred ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---hhhhcccEEEEccCCC-CCCCC
Q psy13765 48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN---INAFRRVSCYIQQDDR-LQPLL 123 (606)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~---~~~~~~~~~yv~Q~~~-l~~~l 123 (606)
...+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.. ....++.+++++|+.. ..+.+
T Consensus 37 ~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 37 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 346899999999999 99999999999999999999753 688999885421 1122344566676542 33444
Q ss_pred cH-HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC
Q psy13765 124 TI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201 (606)
Q Consensus 124 tv-~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP 201 (606)
++ +|+ +.++.... ...++++..+-.....++.. +||||+||+.|++++..+|++ +|++
T Consensus 112 ~~~Dei-d~l~~~~~-----~~~~~~~~~~~~~~~~ll~~------------l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 112 VFIDEI-DAVGRKRG-----SGVGGGNDEREQTLNQLLVE------------MDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEETH-HHHHC--------------CHHHHHHHHHHHHH------------HHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEehhh-hhhhcccC-----ccccccchHHHHHHHHHHHH------------HhCCCCCCCEEEEEccCCchh--CCHH
Confidence 33 332 22211110 01112222222223333332 578899999999999999987 5554
No 162
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.64 E-value=8.8e-11 Score=125.06 Aligned_cols=161 Identities=12% Similarity=0.163 Sum_probs=90.1
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCC-CCCCc---
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRL-QPLLT--- 124 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l-~~~lt--- 124 (606)
..+++++++.+++|++++|.||||||||||+++|+|. ..|++.....+. ..++..+++++|...+ ++..+
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~----~~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL----CGGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH----HCCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh----cCCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHHH
Confidence 4689999999999999999999999999999999985 257766522111 1122235566665421 11111
Q ss_pred -----------------HHHHHHH---cCCc-------------cccCCccccCChHHHHHHHHHHHHhcCCcccc-cCC
Q psy13765 125 -----------------IENVMSL---LGLD-------------ESQNTRSSQLSGGQKKRLSIALELINNPRVMF-LDE 170 (606)
Q Consensus 125 -----------------v~~~l~~---~gl~-------------~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~-~de 170 (606)
+.+.+.. ..+. ...+.....+++|+++|+..+.++...|++++ +|+
T Consensus 230 ~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~ 309 (377)
T 1svm_A 230 GESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLER 309 (377)
T ss_dssp TTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHT
T ss_pred HHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeC
Confidence 1222210 0011 01122233466777777766555566666653 666
Q ss_pred CCCCCCchhhhHHHHH-HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy13765 171 PTTSNPNDQKKRLSIA-LELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ 222 (606)
Q Consensus 171 ~~~~~s~g~~krl~IA-~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~ 222 (606)
|+..+ ++|+.-. +... .++++|||+...++.-...+.+.++.+..
T Consensus 310 ~~~~l----~~RL~~Rg~t~~---~~l~~~~~~~dy~~~l~~~~~~w~~~l~~ 355 (377)
T 1svm_A 310 SEFLL----EKRIIQSGIALL---LMLIWYRPVAEFAQSIQSRIVEWKERLDK 355 (377)
T ss_dssp CTHHH----HTTCTTCHHHHH---HHHHHHSCGGGSCGGGHHHHHHHHHHHHH
T ss_pred CHHHH----HHHHHHcCccHH---HhhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66532 1111100 0000 02346777777777777777777666654
No 163
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.63 E-value=3.2e-09 Score=101.50 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=32.9
Q ss_pred hHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy13765 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKM 219 (606)
Q Consensus 181 krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~ 219 (606)
+...+|++++.+|+++++| ||++|.....++++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4567889999999999999 999999999999988865
No 164
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.61 E-value=1.2e-09 Score=108.26 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=49.8
Q ss_pred ceEEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCC---
Q psy13765 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--- 102 (606)
Q Consensus 26 ~~~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~--- 102 (606)
...|+++|++..+ + . ++++++ ++++|+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 7 ~~~l~l~~~~~~~--------~-~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~-~~G~i~~~g~~~~~~~ 69 (227)
T 1qhl_A 7 FRSLTLINWNGFF--------A-R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP-DLTLLHFRNTTEAGAT 69 (227)
T ss_dssp EEEEEEEEETTEE--------E-E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC-CTTTC-----------
T ss_pred eeEEEEEeeeccc--------C-C------EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc-CCCeEEECCEEcccCC
Confidence 3467788876442 1 1 456666 89999999999999999999999876 4899999997641
Q ss_pred --------hhhhcccEEEEccC
Q psy13765 103 --------INAFRRVSCYIQQD 116 (606)
Q Consensus 103 --------~~~~~~~~~yv~Q~ 116 (606)
....++.++||+|+
T Consensus 70 ~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 70 SGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp -------CGGGBCSSEEEEEEE
T ss_pred ccccccchhhHhhcCcEEEEEe
Confidence 11235678999985
No 165
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.60 E-value=8.7e-09 Score=106.64 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=43.5
Q ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEE---CCccCCh-hh-hcccEEEEccCCCCCC----CCcHHH
Q psy13765 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT---NGHSRNI-NA-FRRVSCYIQQDDRLQP----LLTIEN 127 (606)
Q Consensus 57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~---~G~~~~~-~~-~~~~~~yv~Q~~~l~~----~ltv~~ 127 (606)
+++.+|++++|+||||+|||||+|+|+|...+ .+|+|.+ +|+.... .. ++..++|++|.+.+.+ .+|+++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL-RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEEEE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCHHH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccc-cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCHHH
Confidence 45679999999999999999999999998766 5899998 7765432 12 2222799999998765 678866
Q ss_pred H
Q psy13765 128 V 128 (606)
Q Consensus 128 ~ 128 (606)
+
T Consensus 247 l 247 (307)
T 1t9h_A 247 L 247 (307)
T ss_dssp H
T ss_pred H
Confidence 6
No 166
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.59 E-value=2.5e-09 Score=117.77 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=37.3
Q ss_pred HHHhhhcCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEecCCc
Q psy13765 185 IALELINNPR-VMFLDEPTTGLDSQSCSQCIKLLKMISQ----QGRTIICTIHQPS 235 (606)
Q Consensus 185 IA~aL~~~P~-lllLDEPTsgLD~~~~~~i~~~l~~l~~----~g~tii~~~H~~~ 235 (606)
+|+++...|. ++++||++.-+|.. ..++.+.+.++++ .|.++|++||+|+
T Consensus 289 ~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 289 QHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp -CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred cccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 5666777798 78999999988843 3455666666654 2779999999998
No 167
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.56 E-value=1.4e-07 Score=103.38 Aligned_cols=113 Identities=20% Similarity=0.334 Sum_probs=71.6
Q ss_pred ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM 129 (606)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l 129 (606)
..++++++.+++| +.|.||||+|||||+++|++....+ -+.+++.... .
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~---f~~is~~~~~------------------~-------- 87 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP---FFHISGSDFV------------------E-------- 87 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC---EEEEEGGGTT------------------T--------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC---eeeCCHHHHH------------------H--------
Confidence 3566777777777 7899999999999999999853211 1222221100 0
Q ss_pred HHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCC--------
Q psy13765 130 SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP-------- 201 (606)
Q Consensus 130 ~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEP-------- 201 (606)
..++ .+++++|..++.+.... |.+||+||+
T Consensus 88 ----------~~~g--~~~~~~r~lf~~A~~~~------------------------------p~ILfIDEid~l~~~r~ 125 (476)
T 2ce7_A 88 ----------LFVG--VGAARVRDLFAQAKAHA------------------------------PCIVFIDEIDAVGRHRG 125 (476)
T ss_dssp ----------CCTT--HHHHHHHHHHHHHHHTC------------------------------SEEEEEETGGGTCCC--
T ss_pred ----------HHhc--ccHHHHHHHHHHHHhcC------------------------------CCEEEEechhhhhhhcc
Confidence 0001 25566666655554444 999999999
Q ss_pred --CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCc
Q psy13765 202 --TTGLDSQSCSQCIKLLKMIS----QQGRTIICTIHQPS 235 (606)
Q Consensus 202 --TsgLD~~~~~~i~~~l~~l~----~~g~tii~~~H~~~ 235 (606)
++|.|......+.+++..+. ..+..||.++|+|.
T Consensus 126 ~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 126 AGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp -------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 44677777777777777764 24789999999974
No 168
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.39 E-value=1.6e-07 Score=98.42 Aligned_cols=156 Identities=16% Similarity=0.183 Sum_probs=102.1
Q ss_pred ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM 129 (606)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l 129 (606)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++..... ..+.|. |+.= .++.+++.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl----------------~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVA----------------VFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEE----------------EEES------SSCHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEE----------------EEeC------CCCHHHHH
Confidence 457777777999999999999999999999888753211 112232 2211 12333333
Q ss_pred HHc-----CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhh--c-CCcEEEEeCC
Q psy13765 130 SLL-----GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI--N-NPRVMFLDEP 201 (606)
Q Consensus 130 ~~~-----gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~--~-~P~lllLDEP 201 (606)
..+ +++.. +-+-+.||.++.+|+..|...+.++++.+.|+|..+ -. .-.+.++.+. . +++++++|--
T Consensus 91 ~Rlls~~~~v~~~-~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~--~i~~~ir~l~~~~gg~~lIVIDyL 165 (338)
T 4a1f_A 91 LRALSDLTSINMH-DLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IE--QIRLQLRKLKSQHKELGIAFIDYL 165 (338)
T ss_dssp HHHHHHHHCCCHH-HHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HH--HHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred HHHHHHhhCCCHH-HHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HH--HHHHHHHHHHHhcCCCCEEEEech
Confidence 221 22111 011246999999999999999999999999987543 22 3334444443 2 6899999965
Q ss_pred CCCCCHH-------HHHHHHHHHHHHHhC-CCEEEEEecC
Q psy13765 202 TTGLDSQ-------SCSQCIKLLKMISQQ-GRTIICTIHQ 233 (606)
Q Consensus 202 TsgLD~~-------~~~~i~~~l~~l~~~-g~tii~~~H~ 233 (606)
..=-.+. ...++.+.|+.++++ +.+||+++|-
T Consensus 166 qlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl 205 (338)
T 4a1f_A 166 QLMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQL 205 (338)
T ss_dssp ECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred HHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEec
Confidence 5422221 245678888888876 8999999885
No 169
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.39 E-value=4.6e-08 Score=93.77 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=32.4
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy13765 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS 221 (606)
Q Consensus 182 rl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~ 221 (606)
....|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 345688888889999999 99999999999998887653
No 170
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.38 E-value=3.3e-07 Score=95.07 Aligned_cols=172 Identities=15% Similarity=0.146 Sum_probs=107.2
Q ss_pred ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM 129 (606)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l 129 (606)
.-|+++.+-+++|+++.|.|++|+|||||+..++..... .| ..+.|+.=+ ++.+++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~--~g---------------~~vl~~slE------~s~~~l~ 112 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD--ND---------------DVVNLHSLE------MGKKENI 112 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT--TT---------------CEEEEEESS------SCHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cC---------------CeEEEEECC------CCHHHHH
Confidence 457887777999999999999999999998877642111 11 123333221 2333332
Q ss_pred HH-----cCCc--cccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhh--cCCc--EEEE
Q psy13765 130 SL-----LGLD--ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI--NNPR--VMFL 198 (606)
Q Consensus 130 ~~-----~gl~--~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~--~~P~--lllL 198 (606)
.. .+++ +..+.. ..||.++++|+..|...+.++++.+.|+|..+ - ..-.+.++.+. .+++ ++++
T Consensus 113 ~R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~--~~i~~~i~~l~~~~~~~~~lVVI 187 (315)
T 3bh0_A 113 KRLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS--V--NYIWSKTRQTKRKNPGKRVIVMI 187 (315)
T ss_dssp HHHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB--H--HHHHHHHHHHHHTSSSCCEEEEE
T ss_pred HHHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC--H--HHHHHHHHHHHHhcCCCCeEEEE
Confidence 22 1222 221111 12899999999999999988888888887533 2 22233344443 3577 9999
Q ss_pred eCCCCC------CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCCc------------------hHHHhhcceeeeec
Q psy13765 199 DEPTTG------LDS-QSCSQCIKLLKMISQQ-GRTIICTIHQPS------------------ATLFQMFDQVYLLS 249 (606)
Q Consensus 199 DEPTsg------LD~-~~~~~i~~~l~~l~~~-g~tii~~~H~~~------------------~~i~~~~D~v~~L~ 249 (606)
|--+.= -+. ....++.+.|++++++ |.+|++++|-.. ..+...+|-|+.|.
T Consensus 188 D~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi~L~ 264 (315)
T 3bh0_A 188 DYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLY 264 (315)
T ss_dssp ECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEEEEE
T ss_pred eCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEEEEe
Confidence 965421 111 2335667778888775 999999988431 12556677777774
No 171
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.35 E-value=2.7e-07 Score=87.07 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=33.2
Q ss_pred cc--eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC
Q psy13765 51 VL--KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88 (606)
Q Consensus 51 iL--~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~ 88 (606)
.+ +++++.+.+| +++|+||||||||||+++|.+...+
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 56 7899999999 9999999999999999999987543
No 172
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.33 E-value=1.9e-07 Score=108.34 Aligned_cols=74 Identities=16% Similarity=0.159 Sum_probs=49.4
Q ss_pred hhhhHHHHHHhhhcCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCchHHHhhcceeeee-cCCc
Q psy13765 178 DQKKRLSIALELINNPRVMFLDEPTT-GLDSQSCSQCIKLLKMISQQGRTIICT-IHQPSATLFQMFDQVYLL-SGGQ 252 (606)
Q Consensus 178 g~~krl~IA~aL~~~P~lllLDEPTs-gLD~~~~~~i~~~l~~l~~~g~tii~~-~H~~~~~i~~~~D~v~~L-~~G~ 252 (606)
|+.+|..++..++.+++++++|||.. +||......+++.+.......++|+++ ||++. .+.+++++..++ ..|+
T Consensus 194 G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi~v~gr 270 (773)
T 2xau_A 194 GMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLLAVPGR 270 (773)
T ss_dssp HHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEEECCCC
T ss_pred HHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcccccCc
Confidence 33333334445566699999999996 999887777776666554456778885 88765 566777765444 3454
No 173
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.31 E-value=3.1e-08 Score=95.53 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=40.2
Q ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChh--hhcccEEEEccCCC
Q psy13765 56 CGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN--AFRRVSCYIQQDDR 118 (606)
Q Consensus 56 s~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~~~ 118 (606)
....++|++++|+||||||||||+++|++.. |.+.++|.+.... ..+...++++|++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDED 82 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcc
Confidence 4566799999999999999999999999863 7889988654321 11234577777643
No 174
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.31 E-value=4.4e-08 Score=98.52 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=35.8
Q ss_pred EEEEEee-EEEEecCCcccccccccceeeeEEEeC---CeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 28 EIKFKDL-TYTVSTGLGFKQEPKDVLKNLCGRFPS---NQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 28 ~l~~~nl-~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++++|+ +++|. +.+.+|+|+|+++++ |+.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~-------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD-------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec-------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6899999 98862 346799999999999 9999999999999999999999853
No 175
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.30 E-value=1.1e-06 Score=92.80 Aligned_cols=125 Identities=13% Similarity=0.107 Sum_probs=76.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNT 140 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~ 140 (606)
..-.++++|+||+|||||+|.|+|.... ..+.+.... ...++.+.++... +...+.....+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~-------~~~~~~~t~--~~~~~~~~~~~~~---------~~l~Dt~G~~~~ 227 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPE-------IASYPFTTR--GINVGQFEDGYFR---------YQIIDTPGLLDR 227 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCE-------EECCTTCSS--CEEEEEEEETTEE---------EEEEECTTTSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-------cCCCCCeee--ceeEEEEEecCce---------EEEEeCCCcccc
Confidence 4558999999999999999999986421 111111111 1123334332110 000111112223
Q ss_pred ccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEe-CCCCCCCHHHHHHHHHHHHH
Q psy13765 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD-EPTTGLDSQSCSQCIKLLKM 219 (606)
Q Consensus 141 ~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLD-EPTsgLD~~~~~~i~~~l~~ 219 (606)
....+|++|+|++. +.+ ...++-++++| +|++|+|......+++.+++
T Consensus 228 ~~~~~~~~~~~~~~-~~~------------------------------~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~ 276 (357)
T 2e87_A 228 PISERNEIEKQAIL-ALR------------------------------YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG 276 (357)
T ss_dssp CSTTSCHHHHHHHH-GGG------------------------------GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHH-HHH------------------------------hcCCEEEEEEeCCccccCCHHHHHHHHHHHHH
Confidence 44567888887664 222 22337789999 99999999988888877776
Q ss_pred HHhCCCEEEEEe--cCCc
Q psy13765 220 ISQQGRTIICTI--HQPS 235 (606)
Q Consensus 220 l~~~g~tii~~~--H~~~ 235 (606)
... +..+|++. ||..
T Consensus 277 ~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 277 EFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp HTT-TSCEEEEECCTTTC
T ss_pred hcC-CCCEEEEEECcccC
Confidence 543 77888888 7754
No 176
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=98.28 E-value=1.9e-06 Score=93.52 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=100.8
Q ss_pred ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM 129 (606)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l 129 (606)
.-|+.+.+-+++|+++.|.|++|+|||||..-++...... .| ..+.|+.=+ ++.+++.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g---------------~~vl~~slE------~~~~~l~ 245 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EG---------------VGVGIYSLE------MPAAQLT 245 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TC---------------CCEEEEESS------SCHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CC---------------CeEEEEECC------CCHHHHH
Confidence 3577777779999999999999999999998877532110 11 112332211 2233322
Q ss_pred H-----HcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhh--cCCcEEEEeCCC
Q psy13765 130 S-----LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI--NNPRVMFLDEPT 202 (606)
Q Consensus 130 ~-----~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~--~~P~lllLDEPT 202 (606)
. ..+++.. .-+-+.++..+.+|+.-|...+.+.++.+.|.|. ++..+ ..+.++.+. .+|+++++|..+
T Consensus 246 ~R~~~~~~~i~~~-~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~--l~~~~~~l~~~~~~~lIvID~l~ 320 (444)
T 2q6t_A 246 LRMMCSEARIDMN-RVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLME--VRARARRLVSQNQVGLIIIDYLQ 320 (444)
T ss_dssp HHHHHHHTTCCTT-TCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHH--HHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHcCCCHH-HHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHH--HHHHHHHHHHHcCCCEEEEcChh
Confidence 2 1233221 1122569999999999888888877787777653 33333 334555554 589999999987
Q ss_pred CCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEec
Q psy13765 203 TGLDS----------QSCSQCIKLLKMISQQ-GRTIICTIH 232 (606)
Q Consensus 203 sgLD~----------~~~~~i~~~l~~l~~~-g~tii~~~H 232 (606)
.-.+. ....++.+.|+.++++ |.+||+++|
T Consensus 321 ~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 321 LMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp GCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred hcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 64332 1224677778888775 899999988
No 177
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.23 E-value=3e-07 Score=88.28 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=27.1
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCC
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~ 88 (606)
++++|++++|+|||||||||++++|++...+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 6789999999999999999999999998744
No 178
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.22 E-value=2.5e-08 Score=96.23 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=43.5
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEE--EECCccC
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI--LTNGHSR 101 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I--~~~G~~~ 101 (606)
+.....+.++...++|++++|+|||||||||++++|++.+. ..|.+ +++|...
T Consensus 10 ~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~--~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 10 CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY--QKGKLCYILDGDNV 64 (200)
T ss_dssp CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHHH
T ss_pred cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEecCchh
Confidence 44556777888889999999999999999999999999764 25777 8887543
No 179
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.22 E-value=9.3e-07 Score=93.65 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=79.7
Q ss_pred CCeE-EEEECCCCCCHHHHHHHHhCCCCC----------CCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHH--
Q psy13765 61 SNQL-IAIMGPSGAGKSSLLDVLSGYRSN----------GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIEN-- 127 (606)
Q Consensus 61 ~Ge~-~aIiGpsGaGKSTLL~~L~g~~~~----------~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~-- 127 (606)
+|-. ++|+|++|||||||+|.|+|.... ..+|.|.++|.+.. +....|++.|.+. ..++.
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHH
Confidence 4544 999999999999999999997531 24688988885431 2233455444221 12222
Q ss_pred -HHHHcCCccccCCc--cccCChHH------HHHH-HHHHHHh-cCCcccccCCCCCCCCchhhhHHHHH----Hhh-hc
Q psy13765 128 -VMSLLGLDESQNTR--SSQLSGGQ------KKRL-SIALELI-NNPRVMFLDEPTTSNPNDQKKRLSIA----LEL-IN 191 (606)
Q Consensus 128 -~l~~~gl~~~~~~~--~~~lSgGq------rqRv-~ia~~L~-~~~~~~~~de~~~~~s~g~~krl~IA----~aL-~~ 191 (606)
.++.+. ..|-. +-..|... .+.+ .+...+- .+.++++.......+|+++++++.++ +++ ..
T Consensus 250 ~tl~~~~---~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~ 326 (364)
T 2qtf_A 250 VTLSEAK---YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSP 326 (364)
T ss_dssp HHHHGGG---GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHH---hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCC
Confidence 222111 01111 11222211 1111 1222221 22223322233334567777777776 555 44
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy13765 192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ 222 (606)
Q Consensus 192 ~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~ 222 (606)
+|++ +|+|++|.....++.+.|.++..
T Consensus 327 ~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 327 IFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4554 89999999999999999987654
No 180
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.21 E-value=1.3e-07 Score=95.00 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=47.8
Q ss_pred ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHh---CCCCCCCccEEE--------ECCccCC----hhhhcccEEEEc
Q psy13765 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS---GYRSNGVTGQIL--------TNGHSRN----INAFRRVSCYIQ 114 (606)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~---g~~~~~~~G~I~--------~~G~~~~----~~~~~~~~~yv~ 114 (606)
.++++.+ ++|++++|+|||||||||++++|+ |+..+ .+|.+. .+|.+.. ...+++.+++++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~-d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL-DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE-EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC-CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 3455544 789999999999999999999999 88655 489998 8886542 345677889998
Q ss_pred cCC
Q psy13765 115 QDD 117 (606)
Q Consensus 115 Q~~ 117 (606)
|++
T Consensus 94 ~~~ 96 (252)
T 4e22_A 94 VSQ 96 (252)
T ss_dssp EEE
T ss_pred ecC
Confidence 864
No 181
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.21 E-value=1.9e-07 Score=90.12 Aligned_cols=127 Identities=13% Similarity=0.199 Sum_probs=69.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCccc
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSS 143 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~~~ 143 (606)
+++|+|||||||||+.+.|+++ |...+++- .+.+.+. + ....++.++.+.+|....
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l------g~~~id~d-----~~~~~~~---~----~~~~~~~~i~~~~g~~~~------ 59 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL------GVPLVDAD-----VVAREVV---A----KDSPLLSKIVEHFGAQIL------ 59 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT------TCCEEEHH-----HHHHHTT---C----SSCHHHHHHHHHHCTTCC------
T ss_pred EEEEECCCCCCHHHHHHHHHHC------CCcccchH-----HHHHHHc---c----CChHHHHHHHHHhCHHHh------
Confidence 6899999999999999999983 33344431 1111110 0 012245666677665332
Q ss_pred cCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy13765 144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ 223 (606)
Q Consensus 144 ~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~ 223 (606)
.+.|+.+|..++.....+|+. +++ + ++.++|.....+.+.++.. .
T Consensus 60 -~~~g~~~r~~l~~~~f~~~~~--------------~~~----------------l--~~~~~p~v~~~~~~~~~~~--~ 104 (206)
T 1jjv_A 60 -TEQGELNRAALRERVFNHDED--------------KLW----------------L--NNLLHPAIRERMKQKLAEQ--T 104 (206)
T ss_dssp -------CHHHHHHHHHTCHHH--------------HHH----------------H--HHHHHHHHHHHHHHHHHTC--C
T ss_pred -ccCccccHHHHHHHHhCCHHH--------------HHH----------------H--HhccCHHHHHHHHHHHHhc--C
Confidence 256778888877776666321 111 1 2234555555554444322 3
Q ss_pred CCEEEEEecCCchH-HHhhcceeeeec
Q psy13765 224 GRTIICTIHQPSAT-LFQMFDQVYLLS 249 (606)
Q Consensus 224 g~tii~~~H~~~~~-i~~~~D~v~~L~ 249 (606)
+.++|+.+|..... +...||.+++++
T Consensus 105 ~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 105 APYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp SSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred CCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 56888888875432 245678877774
No 182
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.20 E-value=4.1e-06 Score=87.97 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=35.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCc
Q psy13765 192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ---QGRTIICTIHQPS 235 (606)
Q Consensus 192 ~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~---~g~tii~~~H~~~ 235 (606)
+|.++++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 125 ~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 125 LYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp CCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 3889999999876 88888888888877665 5789999999874
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.19 E-value=2e-06 Score=93.31 Aligned_cols=96 Identities=13% Similarity=0.175 Sum_probs=63.9
Q ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeee-ecCCcEEEEcChh--HHHH---
Q psy13765 192 NPRVMFLDEPTTGLDS-QSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYL-LSGGQCLYQGATD--QLVN--- 264 (606)
Q Consensus 192 ~P~lllLDEPTsgLD~-~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~-L~~G~~~~~G~~~--~~~~--- 264 (606)
+|++|++||+..-.+. .++..+...+..+.+.|+.||+++|++...+..+.+++.- +..|.++..++++ +..+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 4999999999887664 6778888999988888999999999865443234444443 4567777777653 3333
Q ss_pred -HHHhCCCCCCCCCChHHHHHHHhcC
Q psy13765 265 -YLSSVNLPCPKYHNPADFVIELASG 289 (606)
Q Consensus 265 -~f~~~g~~~~~~~~~ad~~~~~~~~ 289 (606)
..+..|...++ +..+++.+...+
T Consensus 274 ~~~~~~~~~i~~--e~l~~la~~~~g 297 (440)
T 2z4s_A 274 KMLEIEHGELPE--EVLNFVAENVDD 297 (440)
T ss_dssp HHHHHHTCCCCT--THHHHHHHHCCS
T ss_pred HHHHHcCCCCCH--HHHHHHHHhcCC
Confidence 33444554433 456666655543
No 184
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.19 E-value=4.9e-08 Score=107.47 Aligned_cols=130 Identities=18% Similarity=0.314 Sum_probs=81.3
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCCh---hhhcccEEEEccCCC-CCCCCc
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---NAFRRVSCYIQQDDR-LQPLLT 124 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~~~yv~Q~~~-l~~~lt 124 (606)
..+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+... ....+.+..++|+.. ..|...
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 45788999999999 89999999999999999999753 5789998865321 112234556666643 233332
Q ss_pred H-HHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCC
Q psy13765 125 I-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203 (606)
Q Consensus 125 v-~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTs 203 (606)
+ +|+ +.++.. +...+.+++..+-.....|+.. +|||++++..|+.+...+|++ |||+..
T Consensus 128 ~IDEI-d~l~~~-----r~~~~~~~~~e~~~~l~~LL~~------------Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 128 FIDEI-DAVGRK-----RGSGVGGGNDEREQTLNQLLVE------------MDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEECG-GGTCCC-----SSSSTTTSSHHHHHHHHHHHHH------------GGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEehH-HHHHHh-----hccCcCCCcHHHHHHHHHHHHH------------hcccccCccEEEEEecCChhh--cCcccc
Confidence 2 222 112211 1111223332222222333332 578888888899999999987 888764
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.18 E-value=2.9e-07 Score=105.01 Aligned_cols=131 Identities=11% Similarity=0.091 Sum_probs=76.8
Q ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCccEEEECCccC---ChhhhcccEEEEccCCCCCCCCcHHHHHHH
Q psy13765 56 CGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN-GVTGQILTNGHSR---NINAFRRVSCYIQQDDRLQPLLTIENVMSL 131 (606)
Q Consensus 56 s~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~-~~~G~I~~~G~~~---~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~ 131 (606)
|+.+++|+.++|+|++|+|||||++.|++.... ...|+| .+|... ...+.++.+++.+|...+... ++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~------ 74 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GH------ 74 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TE------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CE------
Confidence 356789999999999999999999999965432 236777 555432 223345566666665443321 00
Q ss_pred cCCccccCCccc-cCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHH
Q psy13765 132 LGLDESQNTRSS-QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSC 210 (606)
Q Consensus 132 ~gl~~~~~~~~~-~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~ 210 (606)
.....|+... .++ .+.. ...-..++.++++| |+.|+|+.+.
T Consensus 75 --~~nliDTpG~~~f~-~~~~----------------------------------~~l~~ad~~ilVvD-~~~g~~~qt~ 116 (665)
T 2dy1_A 75 --RVFLLDAPGYGDFV-GEIR----------------------------------GALEAADAALVAVS-AEAGVQVGTE 116 (665)
T ss_dssp --EEEEEECCCSGGGH-HHHH----------------------------------HHHHHCSEEEEEEE-TTTCSCHHHH
T ss_pred --EEEEEeCCCccchH-HHHH----------------------------------HHHhhcCcEEEEEc-CCcccchhHH
Confidence 0011122111 011 1111 11112347889999 9999998876
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765 211 SQCIKLLKMISQQGRTIICTIHQPSA 236 (606)
Q Consensus 211 ~~i~~~l~~l~~~g~tii~~~H~~~~ 236 (606)
+.++.+.+.|..+|++.|..+.
T Consensus 117 ----~~~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 117 ----RAWTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp ----HHHHHHHHTTCCEEEEEECGGG
T ss_pred ----HHHHHHHHccCCEEEEecCCch
Confidence 3344444568888899998653
No 186
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.17 E-value=1.9e-06 Score=89.70 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=42.1
Q ss_pred ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC
Q psy13765 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR 101 (606)
Q Consensus 52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~ 101 (606)
++++++++++|++++|+||||+||||++..|++...+ ..|+|.+.+.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~-~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE-LGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 3789999999999999999999999999999998654 378898877654
No 187
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.10 E-value=6.6e-07 Score=85.21 Aligned_cols=26 Identities=46% Similarity=0.620 Sum_probs=24.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGYRS 87 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~~~ 87 (606)
|++++|+||||||||||+++|+|+.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999875
No 188
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.05 E-value=1.1e-06 Score=83.38 Aligned_cols=39 Identities=13% Similarity=0.260 Sum_probs=31.0
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG 98 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G 98 (606)
.+|++++|+||||||||||++.|++..++...|.|....
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~tt 41 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTT 41 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccC
Confidence 369999999999999999999999976533456665443
No 189
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.05 E-value=1.8e-06 Score=83.07 Aligned_cols=40 Identities=23% Similarity=0.097 Sum_probs=24.4
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
+...+++|||+++++|++++|+||+||||||+.+.|++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4457899999999999999999999999999999999753
No 190
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.03 E-value=2.1e-06 Score=90.44 Aligned_cols=34 Identities=35% Similarity=0.605 Sum_probs=27.5
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
..+|++++++++ .++|+|++|||||||+|.|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999988 8999999999999999999995
No 191
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.01 E-value=2.3e-06 Score=88.15 Aligned_cols=153 Identities=16% Similarity=0.170 Sum_probs=80.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHcCCccccCCc
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTR 141 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~gl~~~~~~~ 141 (606)
+..++|+|++|+|||||+|.|.|.... + ..+.+.. ...+..+++.+++.-+. ..|+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~-----i-~s~~~~t--Tr~~~~gi~~~~~~~i~---------------~iDTp 64 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKIS-----I-TSRKAQT--TRHRIVGIHTEGAYQAI---------------YVDTP 64 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEE-----E-CCCCSSC--CSSCEEEEEEETTEEEE---------------EESSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcc-----c-cCCCCCc--ceeeEEEEEEECCeeEE---------------EEECc
Confidence 448999999999999999999986311 0 1111111 12344566666532100 01111
Q ss_pred ccc-CC-hHH-HHHHHHHHHHhcCCccc--ccCCCCCCCCchhhhHHHHHHhhh--cCCcEEEEeCCCCCCCHHH-HHHH
Q psy13765 142 SSQ-LS-GGQ-KKRLSIALELINNPRVM--FLDEPTTSNPNDQKKRLSIALELI--NNPRVMFLDEPTTGLDSQS-CSQC 213 (606)
Q Consensus 142 ~~~-lS-gGq-rqRv~ia~~L~~~~~~~--~~de~~~~~s~g~~krl~IA~aL~--~~P~lllLDEPTsgLD~~~-~~~i 213 (606)
... -. ... +.....+...+.+.++. +.|- .. +++|++ .++..+. ..|.++++ +.+|... ...+
T Consensus 65 G~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~-~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~ 135 (301)
T 1ega_A 65 GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEG-TR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADL 135 (301)
T ss_dssp SCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEET-TC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHH
T ss_pred CCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeC-CC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHH
Confidence 000 00 000 00000111122333442 2332 22 555554 3444444 56999999 7899877 6677
Q ss_pred HHHHHHHHhC-CC--EEEEEecCCchHHHhhcceeee
Q psy13765 214 IKLLKMISQQ-GR--TIICTIHQPSATLFQMFDQVYL 247 (606)
Q Consensus 214 ~~~l~~l~~~-g~--tii~~~H~~~~~i~~~~D~v~~ 247 (606)
.+.++++++. |. .+.++.|+-. .+..++|.+.-
T Consensus 136 ~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~~ 171 (301)
T 1ega_A 136 LPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVRK 171 (301)
T ss_dssp HHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHHT
T ss_pred HHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHHH
Confidence 8888888764 43 5666777654 46677777653
No 192
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.98 E-value=3e-05 Score=78.83 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++.-+.|.||+|+|||||.+++++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999753
No 193
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.97 E-value=1.1e-05 Score=84.54 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=26.5
Q ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+-+++|+++.|.||+|+|||||+..++..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999988764
No 194
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.94 E-value=2.6e-06 Score=83.95 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=34.8
Q ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc
Q psy13765 56 CGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS 100 (606)
Q Consensus 56 s~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~ 100 (606)
+...++|++++|.||||||||||+++|+|. .|+|.+++.+
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~ 53 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEP 53 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCT
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecC
Confidence 345689999999999999999999999987 5788888865
No 195
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.92 E-value=1e-05 Score=84.00 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=26.3
Q ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+-+++|+++.|.||+|+|||||+..++..
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 56899999999999999999999888763
No 196
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.84 E-value=3.4e-06 Score=88.21 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
++++.+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998854
No 197
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.80 E-value=3.5e-05 Score=81.21 Aligned_cols=34 Identities=26% Similarity=0.489 Sum_probs=27.7
Q ss_pred cceeee--EEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765 51 VLKNLC--GRFPSNQLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 51 iL~~vs--~~i~~Ge~~aIiGpsGaGKSTLL~~L~g 84 (606)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 355543 3589999999999999999999987765
No 198
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.80 E-value=8.4e-06 Score=79.01 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=29.2
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEE
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQIL 95 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~ 95 (606)
++|++++|+||||||||||++.|++..++...+.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~ 41 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSIS 41 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEe
Confidence 589999999999999999999999986542333333
No 199
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.77 E-value=4.7e-05 Score=82.04 Aligned_cols=153 Identities=14% Similarity=0.102 Sum_probs=83.2
Q ss_pred eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHHHHc
Q psy13765 53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLL 132 (606)
Q Consensus 53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l~~~ 132 (606)
++++++ +|++++++|+||+||||++..|++.... ..|+|.+.+.+......... .....+..
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~-~g~~Vllvd~D~~r~aa~~q---------------L~~~~~~~ 152 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQ---------------LRLLGEKV 152 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCSSCHHHHHH---------------HHHHHHHH
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEeeccccCchhHHH---------------HHHhcccC
Confidence 677887 8999999999999999999999998654 36788877654321110000 00111222
Q ss_pred CCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCC--chhhhHHHHHHhhhcCCcEEEEeCCCCCCCHHHH
Q psy13765 133 GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP--NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSC 210 (606)
Q Consensus 133 gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s--~g~~krl~IA~aL~~~P~lllLDEPTsgLD~~~~ 210 (606)
|+.-..... +..-.+--+-.+..+-..+-|+++.|-|...-. ........+++++..++-++++| +++|.|..
T Consensus 153 gv~v~~~~~--~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~av-- 227 (425)
T 2ffh_A 153 GVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEAL-- 227 (425)
T ss_dssp TCCEEECCT--TCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHHH--
T ss_pred CccEEecCC--CCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHHH--
Confidence 332211100 001111111122222235667888888764321 12444556677776677778888 45665443
Q ss_pred HHHHHHHHHHHh-CCCEEEEEec
Q psy13765 211 SQCIKLLKMISQ-QGRTIICTIH 232 (606)
Q Consensus 211 ~~i~~~l~~l~~-~g~tii~~~H 232 (606)
+.++...+ -+.+-++.++
T Consensus 228 ----~~a~~f~~~l~i~GVIlTK 246 (425)
T 2ffh_A 228 ----SVARAFDEKVGVTGLVLTK 246 (425)
T ss_dssp ----HHHHHHHHHTCCCEEEEES
T ss_pred ----HHHHHHHhcCCceEEEEeC
Confidence 23334433 3556556565
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.76 E-value=3.2e-05 Score=79.32 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=30.5
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG 98 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G 98 (606)
.++++..+.|.||+|+|||||.++|++... .+-+.+++
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~ 82 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKG 82 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEh
Confidence 467899999999999999999999998642 34555554
No 201
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.76 E-value=1.5e-05 Score=76.84 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=26.9
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
++++|++++|+|+|||||||+.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 57889999999999999999999999864
No 202
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.73 E-value=0.0001 Score=73.37 Aligned_cols=34 Identities=29% Similarity=0.689 Sum_probs=24.3
Q ss_pred cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++++++..++| +.|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 345555555655 8899999999999999999864
No 203
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.72 E-value=9e-06 Score=75.99 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=31.2
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR 101 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~ 101 (606)
.+|++++|+|||||||||+++.|++.. |.+.+++...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccc
Confidence 469999999999999999999998852 6778877543
No 204
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.70 E-value=3.6e-06 Score=93.77 Aligned_cols=48 Identities=21% Similarity=0.343 Sum_probs=39.9
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG 98 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G 98 (606)
..+++++++++ +|+.++|+||||+|||||+++|++...+ ..|+|.++|
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~~~ 143 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISLGG 143 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC-EEEEECCCC
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEecc
Confidence 34678888888 8999999999999999999999998654 367776665
No 205
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.66 E-value=1.6e-05 Score=76.83 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=26.1
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~ 87 (606)
...+|++++|+||||||||||++.|.+..+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345899999999999999999999998654
No 206
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.64 E-value=8.7e-06 Score=78.40 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=33.7
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH 99 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~ 99 (606)
..++|++++|+||||||||||++.|++...+ ..|.|.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~-~~~~v~~~~~ 58 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE-QGISVCVFHM 58 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH-TTCCEEEEEG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhh-cCCeEEEecc
Confidence 3678999999999999999999999997643 3577776554
No 207
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.61 E-value=0.0001 Score=79.92 Aligned_cols=160 Identities=13% Similarity=0.145 Sum_probs=92.2
Q ss_pred ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM 129 (606)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l 129 (606)
.-|+.+.+-+++|+++.|.|++|+|||||.--++..... .| ..+.|+.=+.. +.-.+..++
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~--~g---------------~~vl~fSlEms--~~ql~~R~~ 245 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD--ND---------------DVVNLHSLEMG--KKENIKRLI 245 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH--TT---------------CEEEEECSSSC--TTHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH--cC---------------CEEEEEECCCC--HHHHHHHHH
Confidence 346666666999999999999999999998776643111 11 11222221100 000011111
Q ss_pred H-HcCCccccCCcccc--CChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhh--cCCc--EEEEeCCC
Q psy13765 130 S-LLGLDESQNTRSSQ--LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI--NNPR--VMFLDEPT 202 (606)
Q Consensus 130 ~-~~gl~~~~~~~~~~--lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~--~~P~--lllLDEPT 202 (606)
. ..|++...- +-+. |+..+.+|+.-|...+.+.++.+.|+|. ++-.+ -.+.++.+. .+|+ ++++|--+
T Consensus 246 ~~~~~i~~~~l-~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~--i~~~ir~l~~~~~~~~~lIVID~Lq 320 (444)
T 3bgw_A 246 VTAGSINAQKI-KAARRDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNY--IWSKTRQTKRKNPGKRVIVMIDYLQ 320 (444)
T ss_dssp HHHSCCCHHHH-HHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHH--HHHHHHHHHHHSCSSCEEEEEECST
T ss_pred HHHcCCCHHHH-hcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHH--HHHHHHHHHHHhCCCCeEEEEecHH
Confidence 1 112221100 1123 7888889998888888777887777764 33322 222333332 4789 99999654
Q ss_pred CC---C---CH-HHHHHHHHHHHHHHhC-CCEEEEEecC
Q psy13765 203 TG---L---DS-QSCSQCIKLLKMISQQ-GRTIICTIHQ 233 (606)
Q Consensus 203 sg---L---D~-~~~~~i~~~l~~l~~~-g~tii~~~H~ 233 (606)
.= - +. ....++.+.|+.++++ |.+||+++|-
T Consensus 321 ~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 359 (444)
T 3bgw_A 321 LLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQL 359 (444)
T ss_dssp TSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 21 1 11 1334667778888775 9999999983
No 208
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.60 E-value=3.1e-05 Score=90.21 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=27.7
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~ 87 (606)
.+++|+.++|.||||+|||||+++|++...
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 678999999999999999999999999754
No 209
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.60 E-value=8.5e-05 Score=73.14 Aligned_cols=52 Identities=23% Similarity=0.383 Sum_probs=42.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhhcceeeeec
Q psy13765 193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH---------QPSATLFQMFDQVYLLS 249 (606)
Q Consensus 193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H---------~~~~~i~~~~D~v~~L~ 249 (606)
|+++++||--. |+. ++++.++.+++.|.+||++-| .++..+..++|+|.-|+
T Consensus 90 ~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 90 TKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp CCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 89999999854 654 355666777777999999999 66678889999999875
No 210
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.60 E-value=6.1e-06 Score=85.77 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=35.8
Q ss_pred cccccceeeeEEEeCCe------EEEEECCCCCCHHHHHHHHhCCCC
Q psy13765 47 EPKDVLKNLCGRFPSNQ------LIAIMGPSGAGKSSLLDVLSGYRS 87 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge------~~aIiGpsGaGKSTLL~~L~g~~~ 87 (606)
+.++.|++++..+.+++ ++||+||||||||||+++|+++..
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45678888888888877 999999999999999999999754
No 211
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.56 E-value=4.4e-05 Score=70.26 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=25.7
Q ss_pred eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765 53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g 84 (606)
++.++++.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4456666666 999999999999999999863
No 212
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.50 E-value=3.5e-05 Score=72.17 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 213
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.49 E-value=0.00015 Score=78.20 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=29.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG 98 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G 98 (606)
++.+++++||+|+||||++..|++.... ..++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~-~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK-RGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEe
Confidence 5899999999999999999999987543 245665544
No 214
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.48 E-value=6.2e-05 Score=74.14 Aligned_cols=55 Identities=9% Similarity=0.124 Sum_probs=33.4
Q ss_pred hcCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcce
Q psy13765 190 INNPRVMFLDEPTT-GLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQ 244 (606)
Q Consensus 190 ~~~P~lllLDEPTs-gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~ 244 (606)
+.+.+++++||.-. ++|.......++.+.+...+-++++++.--+...+.+++++
T Consensus 174 l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 174 IRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp CTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred hcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 45689999999976 67776665455444443333346666655444445555554
No 215
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.45 E-value=4.1e-05 Score=71.15 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.|++++|+|||||||||++++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999999864
No 216
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.45 E-value=2.1e-05 Score=87.63 Aligned_cols=42 Identities=29% Similarity=0.303 Sum_probs=35.1
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcc-EEE-ECCcc
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG-QIL-TNGHS 100 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G-~I~-~~G~~ 100 (606)
.+++|++++|+|+||||||||+++|+|.+.+. +| ++. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~-~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM-GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT-CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc-CCceEEEECCcH
Confidence 57899999999999999999999999987653 54 674 78753
No 217
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.42 E-value=8.6e-05 Score=76.58 Aligned_cols=44 Identities=9% Similarity=0.168 Sum_probs=33.8
Q ss_pred CCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 192 NPRVMFLDEPTT-GLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 192 ~P~lllLDEPTs-gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
+|++|++||+-. .-|..+...+...+..+.+.|..+|++++.+.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 389999999865 23447788888898888777877888877654
No 218
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.39 E-value=0.00014 Score=69.44 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
..+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 688999999999999999998753
No 219
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.37 E-value=0.00033 Score=71.29 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGYRS 87 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~~~ 87 (606)
..+.|.||+|+||||+.++|++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 6899999999999999999998754
No 220
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.36 E-value=2.1e-05 Score=83.28 Aligned_cols=52 Identities=25% Similarity=0.306 Sum_probs=43.9
Q ss_pred EEEEEeeEEEEecCCcccccccccce--------------eeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLK--------------NLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.+.|+||++.|+. ++..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~-------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHAN-------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCC-------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCC-------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4667888877642 355777 899999999999999999999999999998753
No 221
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.34 E-value=0.00038 Score=70.00 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.3
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
+.++.-+.|.||+|+|||||.++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567779999999999999999998753
No 222
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.34 E-value=0.00015 Score=70.42 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=29.8
Q ss_pred CcEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEecCCc
Q psy13765 193 PRVMFLDEPTTGL-DSQSCSQCIKLLKMISQQGRT-IICTIHQPS 235 (606)
Q Consensus 193 P~lllLDEPTsgL-D~~~~~~i~~~l~~l~~~g~t-ii~~~H~~~ 235 (606)
|+++++||.-.-- +......+.+.+....+.+.. +|++++...
T Consensus 105 ~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 105 FDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp SSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 8999999965422 233367788888887776655 777777543
No 223
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.33 E-value=0.00063 Score=70.16 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=27.9
Q ss_pred cceeee-EEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765 51 VLKNLC-GRFPSNQLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 51 iL~~vs-~~i~~Ge~~aIiGpsGaGKSTLL~~L~g 84 (606)
.|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344433 5689999999999999999999987764
No 224
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.29 E-value=0.0011 Score=65.03 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=29.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecC
Q psy13765 192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ--QGRTIICTIHQ 233 (606)
Q Consensus 192 ~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~--~g~tii~~~H~ 233 (606)
+|+++++..+.+.++......+..+++.+.. ...++|+.+|-
T Consensus 112 ~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 112 GPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp CCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 4899999999888888666555555544432 13588888884
No 225
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.28 E-value=1.9e-05 Score=82.68 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=42.0
Q ss_pred cccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc
Q psy13765 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH 99 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~ 99 (606)
+.+.+++++++.+++|.+++|+|++|+|||||++.|++...+ ..|+|.+-+.
T Consensus 41 ~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~-~~~~v~v~~~ 92 (341)
T 2p67_A 41 LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR-EGLKVAVIAV 92 (341)
T ss_dssp HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEE
T ss_pred HHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEEee
Confidence 345688999999999999999999999999999999987543 2455655443
No 226
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.23 E-value=8.6e-05 Score=78.32 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=44.1
Q ss_pred ccc-cCChHHHHHHHHHHHHh---------cCCcccccCCCCCCCCchhhhHH-HHHHhhhcCCcEEEEeC
Q psy13765 141 RSS-QLSGGQKKRLSIALELI---------NNPRVMFLDEPTTSNPNDQKKRL-SIALELINNPRVMFLDE 200 (606)
Q Consensus 141 ~~~-~lSgGqrqRv~ia~~L~---------~~~~~~~~de~~~~~s~g~~krl-~IA~aL~~~P~lllLDE 200 (606)
.++ .+|||||||++||++|+ .+|+++++|||++.|+...++++ .+...+. ..++...
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~t 328 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGT 328 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEES
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEE
Confidence 344 59999999999999999 89999999999999997655544 4444432 5666653
No 227
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.19 E-value=0.00048 Score=85.14 Aligned_cols=28 Identities=25% Similarity=0.513 Sum_probs=25.8
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-+++|+++.|.||+|+|||||+..++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 4999999999999999999999888764
No 228
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.18 E-value=0.00021 Score=69.02 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=25.5
Q ss_pred eeeeEEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765 53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 53 ~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g 84 (606)
++.++.+.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 3456666665 999999999999999999853
No 229
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.15 E-value=0.0019 Score=67.68 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998753
No 230
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.14 E-value=0.0002 Score=70.51 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=26.5
Q ss_pred cceeeeEEEe---CCeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765 51 VLKNLCGRFP---SNQLIAIMGPSGAGKSSLLDVLSGYRS 87 (606)
Q Consensus 51 iL~~vs~~i~---~Ge~~aIiGpsGaGKSTLL~~L~g~~~ 87 (606)
-|.++|+.++ +|.+++|.||+||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3666666666 899999999999999999999998754
No 231
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.10 E-value=0.00011 Score=77.26 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=32.6
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS 100 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~ 100 (606)
+++.+++|+|++|||||||+|.|+|...+ ..|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~-~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE-RGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh-cCCeEEEEeec
Confidence 46889999999999999999999997544 36777776654
No 232
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.10 E-value=0.00059 Score=74.99 Aligned_cols=172 Identities=15% Similarity=0.135 Sum_probs=90.9
Q ss_pred ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCccCChhhhcccEEEEccCCCCCCCCcHHHHH
Q psy13765 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVM 129 (606)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~l~~~ltv~~~l 129 (606)
.-|+.+.+-+++|+++.|.|++|+|||||..-++-..... .| ..+.|+.= .++.+++.
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g---------------~~vl~~s~------E~s~~~l~ 287 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA-MG---------------KKVGLAML------EESVEETA 287 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT-SC---------------CCEEEEES------SSCHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh-cC---------------CcEEEEec------cCCHHHHH
Confidence 3456555569999999999999999999987665421110 11 11222211 11222222
Q ss_pred HH-----cCCcccc--CCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhhh--cCCcEEEEeC
Q psy13765 130 SL-----LGLDESQ--NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI--NNPRVMFLDE 200 (606)
Q Consensus 130 ~~-----~gl~~~~--~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL~--~~P~lllLDE 200 (606)
.. .|++... .-+.+.++..+.+++. .+++.+.++.+.|.|. .. ...+.++.++.+. .+|+++++|=
T Consensus 288 ~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--~~~~~~~~l~i~~~~~-~~--~~~~i~~~i~~~~~~~~~~lvVID~ 362 (503)
T 1q57_A 288 EDLIGLHNRVRLRQSDSLKREIIENGKFDQWF--DELFGNDTFHLYDSFA-EA--ETDRLLAKLAYMRSGLGCDVIILDH 362 (503)
T ss_dssp HHHHHHHTTSCCTTCHHHHHHHHHTSHHHHHH--HHHHTTTCEEEECCC------CHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred HHHHHHHcCCChhhccccccCCCCHHHHHHHH--HHHhccCCEEEECCCC-CC--CHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 21 1221110 0011223333444432 2334445566666542 12 2233333444443 4699999995
Q ss_pred CCCCC-------CH-HHHHHHHHHHHHHHhC-CCEEEEEecCCc---------------------hHHHhhcceeeeec
Q psy13765 201 PTTGL-------DS-QSCSQCIKLLKMISQQ-GRTIICTIHQPS---------------------ATLFQMFDQVYLLS 249 (606)
Q Consensus 201 PTsgL-------D~-~~~~~i~~~l~~l~~~-g~tii~~~H~~~---------------------~~i~~~~D~v~~L~ 249 (606)
-+. + +. ....++++.|++++++ |.+||+++|-.. ..+...+|-|+.|.
T Consensus 363 l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 363 ISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp TTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEE
T ss_pred chh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEE
Confidence 432 2 11 2234577778888765 999999988542 13456688888885
No 233
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.07 E-value=0.001 Score=70.27 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=24.3
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g 84 (606)
-+++|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 589999999999999999999877653
No 234
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.05 E-value=0.00021 Score=68.70 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=29.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 192 ~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 388999999765 7777766666655432 13567888888754
No 235
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.04 E-value=0.00025 Score=68.79 Aligned_cols=57 Identities=21% Similarity=0.173 Sum_probs=39.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC--CCCccEEEE--------CCccCC----hhhhcccEEEEccCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGYRS--NGVTGQILT--------NGHSRN----INAFRRVSCYIQQDD 117 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~~--~~~~G~I~~--------~G~~~~----~~~~~~~~~yv~Q~~ 117 (606)
.+.+++|+|||||||||+.++|++.+. ...+|++.. +|.+.+ ...+++.+++++|++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 356899999999999999999997531 113677765 555432 123456678887764
No 236
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.03 E-value=0.00028 Score=66.08 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=29.7
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcc--EEEECCc
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG--QILTNGH 99 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G--~I~~~G~ 99 (606)
++|++++|+|++||||||+.+.|++.+.+ .| .+.++|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~--~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC--HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh--CCCcEEEECCh
Confidence 47999999999999999999999986532 34 5556553
No 237
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.02 E-value=0.00056 Score=73.88 Aligned_cols=38 Identities=24% Similarity=0.479 Sum_probs=30.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-----------CCCccEEEECCcc
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGYRS-----------NGVTGQILTNGHS 100 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~~~-----------~~~~G~I~~~G~~ 100 (606)
-.++|+|+||+|||||+|.|+|... ....|.+.++|+.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 3799999999999999999999742 0236888888864
No 238
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.00 E-value=0.0061 Score=62.95 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=24.2
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
..+..-+.|.||+|+|||||.++++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4566789999999999999999999754
No 239
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.99 E-value=0.00069 Score=69.98 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=22.0
Q ss_pred EEEeCCeEEEEECCCCCCHHHHH-HHHhC
Q psy13765 57 GRFPSNQLIAIMGPSGAGKSSLL-DVLSG 84 (606)
Q Consensus 57 ~~i~~Ge~~aIiGpsGaGKSTLL-~~L~g 84 (606)
+=+++| ++.|.||+|+|||||+ .+++.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 458899 9999999999999995 44443
No 240
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.96 E-value=0.0024 Score=63.00 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
++..-+.|.||+|+|||||.+.++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45556889999999999999999874
No 241
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.96 E-value=0.00034 Score=66.10 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=26.2
Q ss_pred eeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 54 NLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 54 ~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999864
No 242
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.95 E-value=0.00068 Score=71.56 Aligned_cols=31 Identities=32% Similarity=0.553 Sum_probs=27.4
Q ss_pred ceeeeEEEeCCeEEEEECCCCCCHHHHHHHHh
Q psy13765 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS 83 (606)
Q Consensus 52 L~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~ 83 (606)
+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46778888776 99999999999999999986
No 243
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.94 E-value=0.00034 Score=67.16 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=25.4
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
...+|.+++|+||||||||||.+.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999999998754
No 244
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.93 E-value=0.00055 Score=71.32 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999998653
No 245
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.90 E-value=0.0018 Score=81.15 Aligned_cols=34 Identities=26% Similarity=0.489 Sum_probs=27.7
Q ss_pred cceeee--EEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765 51 VLKNLC--GRFPSNQLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 51 iL~~vs--~~i~~Ge~~aIiGpsGaGKSTLL~~L~g 84 (606)
-|+.+- +=+++|+++.|.||+|+|||||...++.
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 355543 2599999999999999999999877764
No 246
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.89 E-value=0.00011 Score=77.39 Aligned_cols=56 Identities=27% Similarity=0.267 Sum_probs=34.6
Q ss_pred EEEEEeeEEEEecCCcccccccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC
Q psy13765 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG 98 (606)
Q Consensus 28 ~l~~~nl~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G 98 (606)
.+.++|++..+ +++.+++++++.| +|+|+||+|||||++.|.|.... ..|.+..++
T Consensus 17 ~v~~~~l~~~~--------~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~-~~~~~~~~~ 72 (361)
T 2qag_A 17 YVGFANLPNQV--------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-PERVIPGAA 72 (361)
T ss_dssp ----CCHHHHH--------HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------
T ss_pred eEEeccchHHh--------CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC-CCCcccCCC
Confidence 46777776543 4567899999877 99999999999999999886433 234443333
No 247
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.88 E-value=0.00048 Score=64.04 Aligned_cols=27 Identities=41% Similarity=0.589 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 248
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.88 E-value=0.00017 Score=69.64 Aligned_cols=40 Identities=25% Similarity=0.164 Sum_probs=33.0
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcc--EEEECC
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG--QILTNG 98 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G--~I~~~G 98 (606)
.+++|.++.|+|++||||||+.+.|++.+.+ ..| .+.++|
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~-~~g~~~~~~~~ 62 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVR-DRRVHAYRLDG 62 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHH-HHCCCEEEECH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhcc-ccCCcEEEECC
Confidence 4678999999999999999999999987543 256 777765
No 249
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.81 E-value=9.5e-05 Score=86.11 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=28.5
Q ss_pred eeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 55 LCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 55 vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++.+.+|+.++|.||||+|||||.++|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 35567899999999999999999999999864
No 250
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.81 E-value=0.00019 Score=74.23 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=30.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765 193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSA 236 (606)
Q Consensus 193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 236 (606)
++++++|| ...|++.....+.+.+.+... ...+|++++++..
T Consensus 134 ~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~ 175 (353)
T 1sxj_D 134 YKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTR 175 (353)
T ss_dssp CEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGG
T ss_pred ceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhh
Confidence 78999999 778998888888887766533 3456667776653
No 251
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.78 E-value=0.0023 Score=79.19 Aligned_cols=34 Identities=26% Similarity=0.489 Sum_probs=27.7
Q ss_pred cceeee--EEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765 51 VLKNLC--GRFPSNQLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 51 iL~~vs--~~i~~Ge~~aIiGpsGaGKSTLL~~L~g 84 (606)
-|+.+- +=+++|+++.|.||+|+|||||.-.++.
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 456554 3589999999999999999999876654
No 252
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.77 E-value=0.0015 Score=62.54 Aligned_cols=52 Identities=23% Similarity=0.452 Sum_probs=40.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhhcceeeeec
Q psy13765 193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH---------QPSATLFQMFDQVYLLS 249 (606)
Q Consensus 193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H---------~~~~~i~~~~D~v~~L~ 249 (606)
.+++++||--- +|+. .++.++++++.|..||++-+ .++..+..++|.|.-|+
T Consensus 82 ~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 82 TEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp CSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 78999999433 6543 35677787778999999999 55677889999998775
No 253
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.70 E-value=0.0056 Score=58.83 Aligned_cols=65 Identities=20% Similarity=0.145 Sum_probs=48.6
Q ss_pred HHHhhh--cCCcEEEEeCCCCC--CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcceeeeecC
Q psy13765 185 IALELI--NNPRVMFLDEPTTG--LDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG 250 (606)
Q Consensus 185 IA~aL~--~~P~lllLDEPTsg--LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 250 (606)
-|+..+ .+.++++|||.+.. ++--...+++++|.+ +-++..||+|.+.+..++.+.+|-|.-|..
T Consensus 111 ~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 111 HGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 444444 44899999999763 344445567777753 224789999999999999999999999975
No 254
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.69 E-value=0.00058 Score=65.15 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g 84 (606)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 255
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.68 E-value=0.00024 Score=67.75 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=31.8
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+.+++++|+..++++ ++|+|++|+|||||++.+.+-
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 468999999988886 689999999999999999874
No 256
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.67 E-value=0.00063 Score=64.21 Aligned_cols=35 Identities=31% Similarity=0.387 Sum_probs=20.8
Q ss_pred ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998888 5689999999999999999874
No 257
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.65 E-value=0.001 Score=63.13 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=37.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc---------hHHHhhcceeeeec
Q psy13765 193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS---------ATLFQMFDQVYLLS 249 (606)
Q Consensus 193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~---------~~i~~~~D~v~~L~ 249 (606)
++++++||--. +|+ ++++.|+.++++|..|+++.++.+ ..+...+|.+.-|+
T Consensus 77 ~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 77 TRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp EEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 78999999643 443 366677777778999999998443 45666788886664
No 258
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.61 E-value=0.0038 Score=56.43 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=29.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765 193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSA 236 (606)
Q Consensus 193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 236 (606)
..+|++||.- .|++..+..+.+.++.. ..+..+|++++.+..
T Consensus 77 ~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~ 118 (145)
T 3n70_A 77 GGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLV 118 (145)
T ss_dssp TSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHH
T ss_pred CcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHH
Confidence 6789999984 58888888888877322 224567777776543
No 259
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.61 E-value=0.00023 Score=74.71 Aligned_cols=38 Identities=32% Similarity=0.489 Sum_probs=34.2
Q ss_pred cccceeeeEEEeCCeE--EEEECCCCCCHHHHHHHHhCCC
Q psy13765 49 KDVLKNLCGRFPSNQL--IAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~--~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
..+++++++.+++|+. ++|+||+||||||+.++|++.+
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3578889999999998 9999999999999999999853
No 260
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.59 E-value=0.002 Score=66.25 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
++-+.|.||+|+|||+|+++|+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999999864
No 261
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.58 E-value=0.0011 Score=60.74 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 262
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.57 E-value=0.00022 Score=69.80 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=37.6
Q ss_pred CCcEEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchH---------HHhhcceeeeec
Q psy13765 192 NPRVMFLDEPTT----GLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSAT---------LFQMFDQVYLLS 249 (606)
Q Consensus 192 ~P~lllLDEPTs----gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~---------i~~~~D~v~~L~ 249 (606)
+|+++++|--+. .-|.....+++..|++++++ |.+++++.|..... +...+|-|+.|.
T Consensus 135 ~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 488888885432 11445566777788887765 99999999864321 234677777774
No 263
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.53 E-value=0.0012 Score=61.70 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g 84 (606)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999984
No 264
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.53 E-value=0.0014 Score=61.70 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=25.8
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~ 87 (606)
.++|.++.|+|++||||||+.+.|++...
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999998654
No 265
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.50 E-value=0.00029 Score=73.24 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=36.1
Q ss_pred cccccceeeeEEEeCCeE--EEEECCCCCCHHHHHHHHhCCCC
Q psy13765 47 EPKDVLKNLCGRFPSNQL--IAIMGPSGAGKSSLLDVLSGYRS 87 (606)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~--~aIiGpsGaGKSTLL~~L~g~~~ 87 (606)
+...+++.++..+++|++ +.+.||+|+||||+++++++...
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 345688889999999998 99999999999999999998653
No 266
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.49 E-value=0.0085 Score=58.99 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=43.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC---------CchHHHhhcceeeeec
Q psy13765 192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQ---------PSATLFQMFDQVYLLS 249 (606)
Q Consensus 192 ~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~---------~~~~i~~~~D~v~~L~ 249 (606)
+.+++++||----.| +.++++.+++.|+.||++-++ +...+..++|.|.-|+
T Consensus 90 ~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 90 GVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred cCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 389999999866543 666666667789999999999 8888999999999875
No 267
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.45 E-value=0.001 Score=63.50 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
..+++|+|+|||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 268
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.45 E-value=0.0012 Score=70.22 Aligned_cols=30 Identities=37% Similarity=0.630 Sum_probs=26.3
Q ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 56 CGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 56 s~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-+.+..|..++|+|+||+|||||+|.|+|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 346678899999999999999999999996
No 269
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.44 E-value=0.00069 Score=67.50 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=34.9
Q ss_pred cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc
Q psy13765 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH 99 (606)
Q Consensus 51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~ 99 (606)
++++.+ ..+++.++.|+|+|||||||+.+.|+.... .+.+.++|.
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D 66 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGD 66 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecH
Confidence 455544 577889999999999999999999998643 245667763
No 270
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.43 E-value=0.0042 Score=56.09 Aligned_cols=41 Identities=5% Similarity=0.063 Sum_probs=30.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy13765 193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP 234 (606)
Q Consensus 193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 234 (606)
..+|++||.- .|+...+..+.+.+.+-...+..+|++++.+
T Consensus 76 ~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 76 GGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 6799999975 5788888888888776543456677777754
No 271
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.39 E-value=0.0018 Score=60.12 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
|.++.|.|++||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998764
No 272
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.38 E-value=0.0017 Score=59.70 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+++|+||+||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 273
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.31 E-value=0.00043 Score=71.07 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=36.9
Q ss_pred ee-eeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc
Q psy13765 53 KN-LCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS 100 (606)
Q Consensus 53 ~~-vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~ 100 (606)
++ ++++.+ |++++++|++|+||||++..|++.... ..|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence 45 777766 999999999999999999999987654 35677776544
No 274
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.30 E-value=0.0093 Score=61.70 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=25.5
Q ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 57 ~~i~~Ge~~aIiGpsGaGKSTLL~~L~g 84 (606)
+-+.+|..+.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5688999999999999999999998874
No 275
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.30 E-value=0.0019 Score=60.36 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999986
No 276
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.017 Score=62.08 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=22.9
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+++-.=+.+.||+|+|||+|.+++|+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 445555889999999999999999975
No 277
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.30 E-value=0.007 Score=58.91 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=42.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhhcceeeeec
Q psy13765 193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH---------QPSATLFQMFDQVYLLS 249 (606)
Q Consensus 193 P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H---------~~~~~i~~~~D~v~~L~ 249 (606)
.+++++||--- +|.. .++.++++++.|+.||++-+ .+...+..++|.|.-|+
T Consensus 102 ~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 102 MDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp CCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 78999999755 6543 33777787778999999999 77888889999998885
No 278
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.26 E-value=0.013 Score=61.41 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.+..-+.|.||+|+|||||.++++..
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHH
Confidence 45556889999999999999999875
No 279
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.24 E-value=0.0019 Score=63.44 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.1
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.-.+|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999999999999873
No 280
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.23 E-value=0.0034 Score=63.96 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=22.2
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
++...+.|.||+|+|||+|.++|+...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344567888999999999999998753
No 281
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.23 E-value=0.0019 Score=60.97 Aligned_cols=38 Identities=32% Similarity=0.314 Sum_probs=28.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC--CCccEEEECCcc
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTNGHS 100 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~~~~--~~~G~I~~~G~~ 100 (606)
.+++|+|+||||||||++.|.+.... ..-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 58999999999999999999875321 124777776543
No 282
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.21 E-value=0.00082 Score=70.69 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=32.8
Q ss_pred hcCCcccccCC---CCC----CCCchhhhHHHHHHhh---hc--CCcEEEEeCCC
Q psy13765 160 INNPRVMFLDE---PTT----SNPNDQKKRLSIALEL---IN--NPRVMFLDEPT 202 (606)
Q Consensus 160 ~~~~~~~~~de---~~~----~~s~g~~krl~IA~aL---~~--~P~lllLDEPT 202 (606)
..+|+++++|| |+. .+|+||++|..++++| .. +++++++||||
T Consensus 275 ~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 275 EYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp HSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred hcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 35899999998 763 4789999999999999 77 89999999997
No 283
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.21 E-value=0.0024 Score=59.63 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+|.++.|.|++||||||+.+.|+..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999864
No 284
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.20 E-value=0.0086 Score=56.52 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=27.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 192 ~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
++.++++||. ..++......+.+.+.+. ..+..+|++++.+.
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYVS 143 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCChh
Confidence 3899999995 446776666666666543 23556777777653
No 285
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.17 E-value=0.025 Score=59.66 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
++.-+.|.||+|+|||+|.++|+..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999999875
No 286
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.17 E-value=0.004 Score=68.29 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=23.3
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+++..-+.|.||+|+|||++.++|+..
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 455667999999999999999999875
No 287
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.15 E-value=0.0024 Score=59.86 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999753
No 288
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.13 E-value=0.0096 Score=74.70 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=35.7
Q ss_pred cceeeeE--EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCcc
Q psy13765 51 VLKNLCG--RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS 100 (606)
Q Consensus 51 iL~~vs~--~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~~ 100 (606)
-|+.+.+ -+++|+++.|-|++|+|||||+..++......-..-+++.+..
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ee 770 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 770 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCC
Confidence 3566654 6999999999999999999999888764322111245566543
No 289
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.12 E-value=0.0027 Score=62.82 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.-+++|.||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 448999999999999999999853
No 290
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.08 E-value=0.023 Score=61.36 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.+..-+.|.||+|+|||||.++++...
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456778999999999999999999764
No 291
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.03 E-value=0.015 Score=58.85 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
+++.-+.|.||+|+|||||.+.++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 455679999999999999999988753
No 292
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.028 Score=59.86 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=21.8
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
++-.=+.+.||+|+|||+|.+++|+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 33344789999999999999999985
No 293
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.99 E-value=0.0034 Score=57.30 Aligned_cols=19 Identities=42% Similarity=0.695 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHH
Q psy13765 64 LIAIMGPSGAGKSSLLDVL 82 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L 82 (606)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 294
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.98 E-value=0.0036 Score=58.44 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.+..+.|+||+||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999854
No 295
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.97 E-value=0.0065 Score=59.70 Aligned_cols=41 Identities=12% Similarity=0.235 Sum_probs=25.3
Q ss_pred CCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy13765 192 NPRVMFLDEPTTG-LDSQSCSQCIKLLKMISQQGRTIICTIH 232 (606)
Q Consensus 192 ~P~lllLDEPTsg-LD~~~~~~i~~~l~~l~~~g~tii~~~H 232 (606)
+|+++++||+-.- .+........+.+..+...|..++.++|
T Consensus 84 ~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 84 APSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp CCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 4999999997632 3322222233333444556889999998
No 296
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.96 E-value=0.016 Score=59.57 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.+..-+.|.||+|+|||+|.++++..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45667899999999999999999865
No 297
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.95 E-value=0.0037 Score=62.31 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
++++|+||||||||||.+.|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 37899999999999999999874
No 298
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.93 E-value=0.0042 Score=59.86 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g 84 (606)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 299
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.91 E-value=0.0035 Score=58.43 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g 84 (606)
.++..+.|.|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577899999999999999999984
No 300
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.90 E-value=0.0037 Score=59.60 Aligned_cols=22 Identities=55% Similarity=0.717 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.+.|+||||||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999998653
No 301
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.89 E-value=0.0043 Score=58.72 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
+|.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998764
No 302
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.88 E-value=0.0046 Score=58.69 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
+|.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999998754
No 303
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.87 E-value=0.0041 Score=58.66 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999874
No 304
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.035 Score=59.83 Aligned_cols=64 Identities=22% Similarity=0.391 Sum_probs=40.8
Q ss_pred cCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHh----CCCEEEEEecCCchHHHhhcceeeeecCCcE---
Q psy13765 191 NNPRVMFLDEPTT----------GLDSQSCSQCIKLLKMISQ----QGRTIICTIHQPSATLFQMFDQVYLLSGGQC--- 253 (606)
Q Consensus 191 ~~P~lllLDEPTs----------gLD~~~~~~i~~~l~~l~~----~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~--- 253 (606)
..|.|+|+||--+ +-|......+.++|.++-. .+.-||++|++|.. .|.- +++.||.
T Consensus 273 ~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~-----LDpA-llRpGRfD~~ 346 (437)
T 4b4t_L 273 HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT-----LDPA-LLRPGRLDRK 346 (437)
T ss_dssp SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS-----SCTT-TTSTTSEEEE
T ss_pred cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh-----hCHH-HhCCCcccee
Confidence 3499999999753 2244455566677777642 35689999998762 3543 3466664
Q ss_pred EEEcChh
Q psy13765 254 LYQGATD 260 (606)
Q Consensus 254 ~~~G~~~ 260 (606)
++.+.|+
T Consensus 347 I~i~lPd 353 (437)
T 4b4t_L 347 VEIPLPN 353 (437)
T ss_dssp ECCCCCC
T ss_pred eecCCcC
Confidence 5666664
No 305
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.80 E-value=0.005 Score=56.84 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g 84 (606)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 306
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.79 E-value=0.0049 Score=66.77 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++|+|++|+|||||+|.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999884
No 307
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.78 E-value=0.031 Score=57.31 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
..+.|.||+|+|||||.+.++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 458999999999999999998754
No 308
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.75 E-value=0.0048 Score=58.78 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
++|.+++|.|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 309
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.74 E-value=0.0048 Score=62.73 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=29.0
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECC
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG 98 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G 98 (606)
-..|.++.|.|||||||||+.+.|+...+ .|.+.+++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEec
Confidence 34678999999999999999999986432 25566665
No 310
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.70 E-value=0.005 Score=57.83 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
No 311
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.68 E-value=0.0051 Score=57.06 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.+.|+||+||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999864
No 312
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.65 E-value=0.0046 Score=61.96 Aligned_cols=23 Identities=30% Similarity=0.752 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|||||||+|.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 313
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.61 E-value=0.0057 Score=58.35 Aligned_cols=27 Identities=30% Similarity=0.251 Sum_probs=23.6
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++|.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999854
No 314
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.61 E-value=0.0061 Score=57.56 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999874
No 315
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.58 E-value=0.007 Score=56.55 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g 84 (606)
++.+++|.|++||||||+.+.|+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999975
No 316
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.56 E-value=0.0027 Score=60.68 Aligned_cols=23 Identities=57% Similarity=0.754 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
+++|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998764
No 317
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.55 E-value=0.025 Score=58.62 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=27.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 192 ~P~lllLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
+++++++||.- .|+......+.+.+.+. ..+..+|++++++.
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSC-CSSEEEEEEESCGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 37899999953 47777666666655432 12566777887754
No 318
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.50 E-value=0.0066 Score=56.62 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
++.|.|++||||||+.+.|+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 319
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.037 Score=59.54 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.1
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+++-.=+.+.||+|+|||+|.+++|+.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 445556889999999999999999985
No 320
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.045 Score=59.16 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.2
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+++-.=+.+.||+|+|||+|.++||+.
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 455566889999999999999999985
No 321
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.40 E-value=0.0082 Score=56.30 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.+++|+|++|||||||++.|.+.+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 478999999999999999988753
No 322
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.38 E-value=0.0082 Score=54.67 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999999853
No 323
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.37 E-value=0.0083 Score=54.27 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 324
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.059 Score=57.74 Aligned_cols=62 Identities=18% Similarity=0.357 Sum_probs=39.6
Q ss_pred CcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHh----CCCEEEEEecCCchHHHhhcceeeeecCCcE---EE
Q psy13765 193 PRVMFLDEPTT----------GLDSQSCSQCIKLLKMISQ----QGRTIICTIHQPSATLFQMFDQVYLLSGGQC---LY 255 (606)
Q Consensus 193 P~lllLDEPTs----------gLD~~~~~~i~~~l~~l~~----~g~tii~~~H~~~~~i~~~~D~v~~L~~G~~---~~ 255 (606)
|.|+|+||--+ +=|......+.++|..+-. .+.-||++|++|.. .|.-+ ++-||. ++
T Consensus 276 P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~-----LDpAL-lRpGRfD~~I~ 349 (437)
T 4b4t_I 276 PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET-----LDPAL-IRPGRIDRKIL 349 (437)
T ss_dssp SEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT-----CCTTS-SCTTTEEEEEC
T ss_pred CcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh-----cCHHH-hcCCceeEEEE
Confidence 99999999543 2233445566677766643 35689999998763 35443 466665 56
Q ss_pred EcChh
Q psy13765 256 QGATD 260 (606)
Q Consensus 256 ~G~~~ 260 (606)
.+.|+
T Consensus 350 v~lPd 354 (437)
T 4b4t_I 350 FENPD 354 (437)
T ss_dssp CCCCC
T ss_pred cCCcC
Confidence 66664
No 325
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.36 E-value=0.0068 Score=54.80 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998754
No 326
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.34 E-value=0.0063 Score=57.26 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.6
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.+++.+++|.|++||||||+.+.|+..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999864
No 327
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.33 E-value=0.0091 Score=57.58 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
++|..+.|+|++||||||+.+.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999864
No 328
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.0067 Score=56.60 Aligned_cols=25 Identities=40% Similarity=0.607 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.-.++|+|++|+|||||++.+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999998864
No 329
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.33 E-value=0.013 Score=54.74 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999876653
No 330
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.29 E-value=0.01 Score=61.09 Aligned_cols=37 Identities=24% Similarity=0.136 Sum_probs=32.1
Q ss_pred ccccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+...+++....+ .|+-++|+|+||+||||+...|.++
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 346788888887 7999999999999999999999874
No 331
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.26 E-value=0.05 Score=55.55 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
+.+.-+.|.||+|+|||++.+.|....
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 566778999999999999999998753
No 332
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.26 E-value=0.0094 Score=54.04 Aligned_cols=22 Identities=36% Similarity=0.738 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHhCCC
Q psy13765 65 IAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 65 ~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998753
No 333
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.26 E-value=0.0074 Score=54.50 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++|+|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999875
No 334
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.25 E-value=0.0066 Score=56.38 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=17.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999854
No 335
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.24 E-value=0.0095 Score=55.89 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
+++|.|++||||||+.+.|+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998653
No 336
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.22 E-value=0.0089 Score=54.67 Aligned_cols=22 Identities=45% Similarity=0.588 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 337
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.21 E-value=0.028 Score=65.68 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=27.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCccEEEECCc
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH 99 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~~~~~~~G~I~~~G~ 99 (606)
..+.|.||+|+|||++.+.|+........--|.+|..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~ 625 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 625 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEech
Confidence 5789999999999999999998643211234556653
No 338
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.18 E-value=0.01 Score=59.87 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|+|||||+|.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 339
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.18 E-value=0.012 Score=53.77 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+.-.++|+|++|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999885
No 340
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.18 E-value=0.0082 Score=53.93 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 341
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.14 E-value=0.0085 Score=53.74 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 342
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.13 E-value=0.0087 Score=55.68 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-.++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 343
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.12 E-value=0.0085 Score=53.86 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++++|++|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 344
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.11 E-value=0.011 Score=56.01 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999874
No 345
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.10 E-value=0.01 Score=57.65 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=21.8
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++.++.|.|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999854
No 346
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.08 E-value=0.0079 Score=53.87 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999875
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.06 E-value=0.013 Score=55.65 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.+.+++|.|++||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
No 348
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.06 E-value=0.0093 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998864
No 349
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.05 E-value=0.011 Score=58.54 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|+|||||+|.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999999864
No 350
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.04 E-value=0.0094 Score=55.58 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-.++|+|++|+|||||++.|.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999863
No 351
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.04 E-value=0.0094 Score=54.00 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 352
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.02 E-value=0.0095 Score=53.77 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 353
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.00 E-value=0.069 Score=52.80 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRS 87 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~ 87 (606)
+.+.-+.|.||+|+|||+|.+.|+....
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 3456788999999999999999987643
No 354
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.00 E-value=0.013 Score=55.48 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
...+++|.|++||||||+.+.|+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999753
No 355
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.00 E-value=0.0098 Score=54.35 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 356
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.99 E-value=0.012 Score=56.31 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 357
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.99 E-value=0.0098 Score=53.60 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 358
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.98 E-value=0.0099 Score=54.38 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 359
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.98 E-value=0.01 Score=55.09 Aligned_cols=23 Identities=43% Similarity=0.590 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68899999999999999999864
No 360
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.96 E-value=0.0089 Score=54.06 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 361
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.95 E-value=0.0045 Score=65.50 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=39.3
Q ss_pred cCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy13765 191 NNPRVMFLDEPTTGLD---SQSCSQCIKLLKMISQQGRTIICTIHQPSA 236 (606)
Q Consensus 191 ~~P~lllLDEPTsgLD---~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 236 (606)
..|.++++||-=.=++ +.....+.+.+++.++.|..++++||.|+.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 4689999999987774 667788889999988889999999999874
No 362
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.95 E-value=0.014 Score=53.66 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
=+.++|.|+.||||||+.+.|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999863
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.94 E-value=0.013 Score=54.69 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 364
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.92 E-value=0.012 Score=54.15 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.+++|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999763
No 365
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.91 E-value=0.011 Score=54.76 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHhCCC
Q psy13765 65 IAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 65 ~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999853
No 366
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.89 E-value=0.017 Score=60.68 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=27.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCCCC----------CCCccEEEECC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGYRS----------NGVTGQILTNG 98 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~~~----------~~~~G~I~~~G 98 (606)
|-.++|+|.+|+|||||+|.|+|... .+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998321 11357777665
No 367
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.89 E-value=0.043 Score=60.22 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=29.3
Q ss_pred ccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.+++.+...+..|.-+.|.||+|+|||+|.+.|+...
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 3444444555677889999999999999999999864
No 368
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.87 E-value=0.011 Score=57.09 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.+..+.|+||+||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999854
No 369
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.84 E-value=0.013 Score=53.55 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 370
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.84 E-value=0.041 Score=63.39 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.+.+.||+|+|||++.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998764
No 371
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.84 E-value=0.016 Score=57.78 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 372
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.83 E-value=0.01 Score=54.25 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999875
No 373
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.82 E-value=0.015 Score=53.11 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999763
No 374
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.82 E-value=0.012 Score=53.17 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 375
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.82 E-value=0.0086 Score=55.14 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=20.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g 84 (606)
+.-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445789999999999999999875
No 376
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.81 E-value=0.015 Score=55.84 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999753
No 377
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.81 E-value=0.012 Score=54.36 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.|.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 378
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.81 E-value=0.014 Score=54.23 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999753
No 379
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.80 E-value=0.012 Score=54.78 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.|.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999885
No 380
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.80 E-value=0.012 Score=54.84 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 381
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.77 E-value=0.023 Score=58.07 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=27.2
Q ss_pred CcEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy13765 193 PRVMFLDEPTTGLD-SQSCSQCIKLLKMISQQGRTIICTIHQPS 235 (606)
Q Consensus 193 P~lllLDEPTsgLD-~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 235 (606)
++++++||.-. |. ......+.+.+.+.. .+..+|++++++.
T Consensus 106 ~~vliiDEi~~-l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~ 147 (324)
T 3u61_B 106 QKVIVIDEFDR-SGLAESQRHLRSFMEAYS-SNCSIIITANNID 147 (324)
T ss_dssp EEEEEEESCCC-GGGHHHHHHHHHHHHHHG-GGCEEEEEESSGG
T ss_pred CeEEEEECCcc-cCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcc
Confidence 89999999743 44 555555556565443 3567888887754
No 382
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.77 E-value=0.012 Score=53.30 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-.++|+|++|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 383
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.73 E-value=0.078 Score=61.30 Aligned_cols=28 Identities=21% Similarity=0.409 Sum_probs=23.7
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
+++-.-+.+.||+|+|||||.+++++..
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4455568899999999999999999864
No 384
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.70 E-value=0.013 Score=54.75 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 385
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.70 E-value=0.013 Score=54.22 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 386
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.70 E-value=0.018 Score=56.80 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.3
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g 84 (606)
+++-.++|.||+||||||+.+.|+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3677899999999999999999974
No 387
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.69 E-value=0.013 Score=52.77 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q psy13765 65 IAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 65 ~aIiGpsGaGKSTLL~~L~g~ 85 (606)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999763
No 388
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.69 E-value=0.013 Score=58.83 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|+|||||+|.|.+..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999998753
No 389
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.67 E-value=0.016 Score=59.21 Aligned_cols=26 Identities=42% Similarity=0.655 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 445 58999999999999999999863
No 390
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.61 E-value=0.017 Score=53.45 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
+.=.++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999998754
No 391
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.59 E-value=0.015 Score=58.05 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|+|||||+|.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999963
No 392
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.58 E-value=0.014 Score=53.39 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 393
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.57 E-value=0.018 Score=59.03 Aligned_cols=23 Identities=43% Similarity=0.707 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999863
No 394
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.56 E-value=0.014 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4889999999999999999874
No 395
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.56 E-value=0.014 Score=55.10 Aligned_cols=22 Identities=36% Similarity=0.684 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999864
No 396
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.56 E-value=0.015 Score=53.09 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999998753
No 397
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.54 E-value=0.013 Score=53.41 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 398
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.53 E-value=0.031 Score=53.79 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=29.8
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
...+++.-..+ .|..++|+||+|+|||||...|+..
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45677766655 5889999999999999999999865
No 399
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.50 E-value=0.015 Score=53.23 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 400
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.49 E-value=0.015 Score=53.98 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++++|++|+|||||++.|++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999875
No 401
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.48 E-value=0.019 Score=56.75 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-+++|.|++||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 402
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.46 E-value=0.016 Score=53.84 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYRS 87 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~~ 87 (606)
-++|+|++|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998643
No 403
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.45 E-value=0.015 Score=55.38 Aligned_cols=23 Identities=43% Similarity=0.652 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 404
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.42 E-value=0.023 Score=52.09 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
..+..+.|.||+|+|||||++.++..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 44577899999999999999999875
No 405
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.40 E-value=0.021 Score=54.47 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
...+++|.|++||||||+.+.|+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999753
No 406
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.40 E-value=0.018 Score=57.01 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 407
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.39 E-value=0.019 Score=53.71 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 408
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.39 E-value=0.016 Score=54.32 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 409
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.38 E-value=0.02 Score=57.09 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|+|||||+|.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
No 410
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.37 E-value=0.017 Score=54.38 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 411
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.37 E-value=0.021 Score=53.70 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998853
No 412
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.34 E-value=0.017 Score=53.72 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 413
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.34 E-value=0.015 Score=53.58 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999875
No 414
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.33 E-value=0.016 Score=61.12 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q psy13765 65 IAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 65 ~aIiGpsGaGKSTLL~~L~g~ 85 (606)
++|+|++|+|||||+|.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
No 415
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.32 E-value=0.017 Score=53.67 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 416
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.32 E-value=0.24 Score=53.36 Aligned_cols=26 Identities=23% Similarity=0.508 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
++.+++++|++|+||||+...|+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998654
No 417
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.27 E-value=0.012 Score=59.90 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=18.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
++-+++|.||+||||||+.+.|+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999763
No 418
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.26 E-value=0.016 Score=54.01 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 419
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.26 E-value=0.018 Score=52.95 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 420
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.25 E-value=0.02 Score=57.63 Aligned_cols=23 Identities=35% Similarity=0.732 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|+|||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999863
No 421
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.24 E-value=0.022 Score=55.03 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-.++|+|++|+|||||++.+.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999875
No 422
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.24 E-value=0.019 Score=58.29 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|+.|+|||||+|.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999974
No 423
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.23 E-value=0.02 Score=56.29 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=21.4
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
+..+|.++.+.|++||||||+.+.|+..+
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999998653
No 424
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.22 E-value=0.024 Score=54.97 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.+.|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 425
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.22 E-value=0.023 Score=53.01 Aligned_cols=24 Identities=13% Similarity=0.361 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.-.++|+|++|+|||||++.+.+.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999999875
No 426
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.21 E-value=0.019 Score=52.73 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 427
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.20 E-value=0.017 Score=53.75 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998754
No 428
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.20 E-value=0.017 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 429
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.20 E-value=0.036 Score=52.18 Aligned_cols=35 Identities=23% Similarity=0.145 Sum_probs=27.9
Q ss_pred cccceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhC
Q psy13765 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g 84 (606)
+..++..-..+ .|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44566665554 588999999999999999988864
No 430
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.20 E-value=0.022 Score=54.91 Aligned_cols=25 Identities=16% Similarity=0.426 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+|-.+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999764
No 431
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.19 E-value=0.027 Score=54.85 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=24.1
Q ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 58 ~i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
..++..++.|+||+||||+|..+.|+..
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4466789999999999999999999854
No 432
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.19 E-value=0.028 Score=54.55 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-+|.++.+.|++||||||+.+.|+..+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999997654
No 433
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.18 E-value=0.017 Score=53.55 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 434
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.16 E-value=0.022 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.=.++|+|++|+|||||++.+.+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
No 435
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.14 E-value=0.02 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 436
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.14 E-value=0.022 Score=53.74 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 437
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.12 E-value=0.012 Score=56.41 Aligned_cols=24 Identities=42% Similarity=0.565 Sum_probs=21.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-.++|+|++|+|||||+|.|.|..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 438
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.10 E-value=0.02 Score=53.83 Aligned_cols=21 Identities=33% Similarity=0.803 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g 84 (606)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 439
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.10 E-value=0.026 Score=53.68 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
No 440
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.07 E-value=0.023 Score=57.41 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHhC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g 84 (606)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999983
No 441
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.04 E-value=0.022 Score=53.19 Aligned_cols=23 Identities=39% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 442
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.04 E-value=0.021 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 443
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.04 E-value=0.022 Score=52.23 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 444
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.03 E-value=0.028 Score=56.73 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g 84 (606)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 445
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.02 E-value=0.019 Score=54.12 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
=-++|+|++|+|||||++.+.+..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 358899999999999999998753
No 446
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.01 E-value=0.021 Score=54.64 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-.++|+|++|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 447
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.98 E-value=0.022 Score=52.78 Aligned_cols=23 Identities=48% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998753
No 448
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.97 E-value=0.023 Score=52.98 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 449
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.95 E-value=0.023 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 450
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.95 E-value=0.032 Score=54.40 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
..+..+.|+|++||||||+.+.|+..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999864
No 451
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.95 E-value=0.029 Score=52.61 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.=-++|+|++|+|||||++.+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999875
No 452
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.94 E-value=0.02 Score=53.38 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 453
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.94 E-value=0.037 Score=58.17 Aligned_cols=74 Identities=28% Similarity=0.552 Sum_probs=63.4
Q ss_pred HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCch-hhhHHHHHHhhhc--CCcEEEE
Q psy13765 125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND-QKKRLSIALELIN--NPRVMFL 198 (606)
Q Consensus 125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g-~~krl~IA~aL~~--~P~lllL 198 (606)
++++++.+||.+..++++.+|||||||||+|||||+.+|+++++|||+++|+.. +++-+.+.+.+.. +-.+++.
T Consensus 144 v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~v 220 (366)
T 3tui_C 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLI 220 (366)
T ss_dssp HHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 678899999999999999999999999999999999999999999999999974 5555667777764 3445553
No 454
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.94 E-value=0.037 Score=57.56 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
++.++.|+||+|||||||-..|+...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999764
No 455
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.92 E-value=0.023 Score=53.68 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.=-++|+|++|+|||||++.+.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 456
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.92 E-value=0.023 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998753
No 457
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.92 E-value=0.02 Score=53.97 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999875
No 458
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.90 E-value=0.027 Score=54.03 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999753
No 459
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.89 E-value=0.023 Score=57.08 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|+|||||+|.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
No 460
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.89 E-value=0.024 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
=-++|+|++|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 467999999999999999998753
No 461
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.87 E-value=0.026 Score=51.79 Aligned_cols=21 Identities=43% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g 84 (606)
.++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999984
No 462
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.80 E-value=0.028 Score=53.68 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999874
No 463
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.78 E-value=0.019 Score=52.79 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=9.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999998764
No 464
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.77 E-value=0.023 Score=54.12 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999998764
No 465
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.77 E-value=0.032 Score=59.67 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.+.+++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999753
No 466
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.76 E-value=0.031 Score=55.18 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
+|.++.+.|++||||||+.+.|+..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999998653
No 467
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.75 E-value=0.027 Score=52.87 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=20.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.=-++|+|++|+|||||++.+.+-
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999764
No 468
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.71 E-value=0.02 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++++|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 469
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.69 E-value=0.024 Score=53.72 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 470
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.68 E-value=0.03 Score=51.37 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 346678999999999999999998753
No 471
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.66 E-value=0.028 Score=52.40 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4789999999999999998764
No 472
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.63 E-value=0.037 Score=58.10 Aligned_cols=74 Identities=26% Similarity=0.515 Sum_probs=63.4
Q ss_pred HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHH-HHHhhhc--CCcEEEE
Q psy13765 125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS-IALELIN--NPRVMFL 198 (606)
Q Consensus 125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~-IA~aL~~--~P~lllL 198 (606)
++++++.+||.+..++++.+|||||||||+|||||+.+|+++++|||+++|+...|+++. ....+.. +-.+++.
T Consensus 119 v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~v 195 (359)
T 3fvq_A 119 IEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFV 195 (359)
T ss_dssp HHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 678999999999999999999999999999999999999999999999999998888874 4444443 3445554
No 473
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.63 E-value=0.031 Score=52.46 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48899999999999999998853
No 474
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.62 E-value=0.033 Score=54.79 Aligned_cols=74 Identities=30% Similarity=0.481 Sum_probs=61.1
Q ss_pred HHHHHHHcCCccc-cCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCc-hhhhHHHHHHhhhc--CCcEEEE
Q psy13765 125 IENVMSLLGLDES-QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN-DQKKRLSIALELIN--NPRVMFL 198 (606)
Q Consensus 125 v~~~l~~~gl~~~-~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~-g~~krl~IA~aL~~--~P~lllL 198 (606)
+.++++.+|+.+. .++++.+|||||||||+||++|+.+|+++++|||+++|+. .+++-..+.+.+.. +-.+++.
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~v 202 (235)
T 3tif_A 125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVV 202 (235)
T ss_dssp HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 4678888999875 4899999999999999999999999999999999999996 45555667777765 3455553
No 475
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.62 E-value=0.035 Score=55.73 Aligned_cols=74 Identities=27% Similarity=0.389 Sum_probs=62.9
Q ss_pred HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhc------CCcccccCCCCCCCCchhh-hHHHHHHhhhcCC--cE
Q psy13765 125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN------NPRVMFLDEPTTSNPNDQK-KRLSIALELINNP--RV 195 (606)
Q Consensus 125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~------~~~~~~~de~~~~~s~g~~-krl~IA~aL~~~P--~l 195 (606)
++++++.+|+.+..++++.+|||||||||+||++|+. +|+++++|||+++|+...+ +-..+-+.+..+- .+
T Consensus 122 ~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tv 201 (266)
T 4g1u_C 122 LQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAV 201 (266)
T ss_dssp HHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEE
T ss_pred HHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 6788999999999999999999999999999999999 9999999999999997554 4556777776553 34
Q ss_pred EEE
Q psy13765 196 MFL 198 (606)
Q Consensus 196 llL 198 (606)
++.
T Consensus 202 i~v 204 (266)
T 4g1u_C 202 CCV 204 (266)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 476
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.61 E-value=0.028 Score=53.33 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998643
No 477
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.60 E-value=0.031 Score=55.58 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++|+|++|+|||||+|.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 478
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.55 E-value=0.036 Score=53.94 Aligned_cols=28 Identities=25% Similarity=0.301 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRS 87 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~~~ 87 (606)
++|.++.+.|++||||||+.+.|+..+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999987543
No 479
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.55 E-value=0.043 Score=53.71 Aligned_cols=26 Identities=31% Similarity=0.630 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 60 PSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 60 ~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.+|.++.+.|++||||||+.+.|+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999999764
No 480
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.55 E-value=0.042 Score=56.62 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+.+++|+||+|||||||...|+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 568999999999999999999865
No 481
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.53 E-value=0.036 Score=57.69 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.+++|.||+|||||||.+.|+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999998753
No 482
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.53 E-value=0.026 Score=53.76 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999875
No 483
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.52 E-value=0.037 Score=53.68 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
+|.++.+.|++||||||+.+.|+..+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998654
No 484
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.50 E-value=0.039 Score=53.96 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 61 SNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 61 ~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998754
No 485
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.48 E-value=0.033 Score=55.63 Aligned_cols=23 Identities=43% Similarity=0.689 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999854
No 486
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.46 E-value=0.04 Score=53.17 Aligned_cols=22 Identities=32% Similarity=0.750 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
No 487
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.42 E-value=0.044 Score=59.40 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=28.1
Q ss_pred cceeeeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 51 iL~~vs~~i~~Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+++.+ ..+-+|+..+|+||||+|||||++.|++.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 44444 45668999999999999999999999764
No 488
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.39 E-value=0.019 Score=54.77 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 489
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.37 E-value=0.029 Score=52.89 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 490
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.35 E-value=0.043 Score=58.04 Aligned_cols=74 Identities=24% Similarity=0.462 Sum_probs=62.8
Q ss_pred HHHHHHHcCCccccCCccccCChHHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHH-HHHHhhhc--CCcEEEE
Q psy13765 125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL-SIALELIN--NPRVMFL 198 (606)
Q Consensus 125 v~~~l~~~gl~~~~~~~~~~lSgGqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl-~IA~aL~~--~P~lllL 198 (606)
++++++.+||.+..++++.+|||||||||+|||||+.+|+++++|||+++|+.-.|+++ .+.+.+.. +-.+++.
T Consensus 114 v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~v 190 (381)
T 3rlf_A 114 VNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 190 (381)
T ss_dssp HHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 67899999999999999999999999999999999999999999999999998765554 45566654 3455554
No 491
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.34 E-value=0.029 Score=55.69 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=23.6
Q ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 59 i~~Ge~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.+++.+++|.|+.||||||+.+.|+..+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578899999999999999999998654
No 492
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.33 E-value=0.038 Score=52.92 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
+.+++|+|++||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999999874
No 493
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.28 E-value=0.027 Score=52.31 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=20.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
.=-++|+|++|+|||||++.+.+-
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 345899999999999999999653
No 494
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.24 E-value=0.0064 Score=58.89 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCCCCCCchhhhHHHHHHhh
Q psy13765 148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189 (606)
Q Consensus 148 GqrqRv~ia~~L~~~~~~~~~de~~~~~s~g~~krl~IA~aL 189 (606)
|||||++||++|+.+|+++++|||+++ .+++-..+.+.+
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~---~~~~l~~~l~~l 146 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT---TPAQMKMFLTRL 146 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC---CHHHHHHHHTTB
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc---cHHHHHHHHHHh
Confidence 999999999999999999999999998 666666666666
No 495
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.19 E-value=1.5 Score=48.27 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHhC
Q psy13765 62 NQLIAIMGPSGAGKSSLLDVLSG 84 (606)
Q Consensus 62 Ge~~aIiGpsGaGKSTLL~~L~g 84 (606)
..+++|.|+.|.|||||.+.++.
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 47999999999999999999984
No 496
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.19 E-value=0.033 Score=51.89 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 497
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.15 E-value=0.048 Score=56.36 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGYR 86 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~~ 86 (606)
.++.|+||+|||||||-+.|+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998753
No 498
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.14 E-value=0.048 Score=52.57 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
++.|+||+||||+|.-+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999864
No 499
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.13 E-value=0.02 Score=53.79 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=4.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy13765 64 LIAIMGPSGAGKSSLLDVLSGY 85 (606)
Q Consensus 64 ~~aIiGpsGaGKSTLL~~L~g~ 85 (606)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999875
No 500
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.02 E-value=0.046 Score=54.71 Aligned_cols=25 Identities=32% Similarity=0.605 Sum_probs=22.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Q psy13765 63 QLIAIMGPSGAGKSSLLDVLSGYRS 87 (606)
Q Consensus 63 e~~aIiGpsGaGKSTLL~~L~g~~~ 87 (606)
..++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 3789999999999999999998653
Done!