RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13765
(606 letters)
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 405 bits (1042), Expect = e-134
Identities = 180/639 (28%), Positives = 299/639 (46%), Gaps = 72/639 (11%)
Query: 12 LSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPS 71
L+ S + + + +K L + ++ K +LKN+ G +L+A+MG S
Sbjct: 1 LTYSWRNSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSS 60
Query: 72 GAGKSSLLDVLSGYRSNGVTGQ--ILTNGHSRNINAFRRVSCYIQQDDRLQPLLT----- 124
GAGK++L++ L+ GV G +L NG + R +S Y+QQDD P LT
Sbjct: 61 GAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHL 120
Query: 125 --------------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
++ V+ LGL + NTR G+ K LS
Sbjct: 121 MFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGV--PGRVKGLSGG-------- 170
Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG 224
++KRL+ A EL+ +P ++F DEPT+GLDS +++LK ++Q+G
Sbjct: 171 --------------ERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 225 RTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVI 284
+TIICTIHQPS+ LF++FD++ L++ G+ Y G+ DQ V + S + PCP+ +NPADF +
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYV 276
Query: 285 ELASGEYG-----VDNINAMVEQ-------AQNDVKPDKKTKKT----KHCTYSNQILQD 328
++ + G + I + + V + + K K I +
Sbjct: 277 QVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYN 336
Query: 329 TSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLL 388
S+ Q LL R L V RD L +R+I + A+++G+++ G V L
Sbjct: 337 ASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGAL 396
Query: 389 FSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFT 448
F L + ++ I F E+ + ++E + Y + AY+++ + ++P+ LFT
Sbjct: 397 FLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFT 456
Query: 449 TIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVN-GTFVGPVLVVPMMM 507
+I Y + G T F F LV +A S GY++ F+ + VGP V+P ++
Sbjct: 457 SITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLL 516
Query: 508 FSGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRK---TLQCDELYCHYKEPKK 564
F GF ++ + IP Y +W S LS+ RYG EG + + T C
Sbjct: 517 FGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGE-V 575
Query: 565 FLQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIK 603
L+T+S + + + + LV ++ +L+AYF L RI+
Sbjct: 576 ILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIR 614
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 223 bits (572), Expect = 6e-70
Identities = 94/234 (40%), Positives = 138/234 (58%), Gaps = 42/234 (17%)
Query: 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85
+ + F++LT TV + K +LKN+ G+ +L AIMGPSGAGKS+LL+ L+G
Sbjct: 1 GVTLSFRNLTVTVKSSPSKSG--KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR 58
Query: 86 RSN-GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSS 143
R+ GV+G++L NG + +FR++ Y+ QDD L P LT+ E +M L
Sbjct: 59 RTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL--------R 110
Query: 144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203
LSGG ++KR+SIALEL++NP ++FLDEPT+
Sbjct: 111 GLSGG------------------------------ERKRVSIALELVSNPSLLFLDEPTS 140
Query: 204 GLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
GLDS S Q + LL+ ++ GRTIIC+IHQPS+ +F++FD++ LLS G+ +Y G
Sbjct: 141 GLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 207 bits (527), Expect = 2e-58
Identities = 168/638 (26%), Positives = 295/638 (46%), Gaps = 78/638 (12%)
Query: 27 IEIKFKDLTYTV------STG------LGFKQEPKD---------VLKNLCGRFPSNQLI 65
I +KF D+ Y V + G LG K + D +L + G +++
Sbjct: 38 ITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEIL 97
Query: 66 AIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT 124
A++GPSG+GKS+LL+ L+G + N TG IL N +R ++ QDD L P LT
Sbjct: 98 AVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTG-FVTQDDILYPHLT 156
Query: 125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSN------PND 178
+ + L + + Q +++ +A +I+ + + N
Sbjct: 157 VRETLVFCSLLRLPKSLTKQ------EKILVAESVISELGLTKCENTIIGNSFIRGISGG 210
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
++KR+SIA E++ NP ++ LDEPT+GLD+ + + + L ++Q+G+TI+ ++HQPS+ +
Sbjct: 211 ERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRV 270
Query: 239 FQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINA 298
+QMFD V +LS G+CL+ G + Y SV NPADF+++LA+ GV +
Sbjct: 271 YQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLAN---GVCQTDG 327
Query: 299 MVEQAQNDVKPDKKTK-------KTKHCTYSNQILQD---------------------TS 330
+ E+ + +VK K K + Q ++
Sbjct: 328 VSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISIST 387
Query: 331 YSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFS 390
+ NQ +LL R LK ++ + LR+ I AL+ G+++ +S V LLF
Sbjct: 388 WFNQFSILLQRS-LKERKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFF 444
Query: 391 ILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTI 450
I I + ++ FP E +I +KE + Y+L +Y+++ + D+P+ +F T+
Sbjct: 445 ISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTV 504
Query: 451 VYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMMMF-- 508
Y + G EL F + L V ++Q +G +GA +++ ++ V M+ F
Sbjct: 505 TYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAA--IMDAKKASTIVTVTMLAFVL 562
Query: 509 SGFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKT---LQCDELYCHYKEPKKF 565
+G G ++ +P M W +S Y + YG ++ L C + + KF
Sbjct: 563 TG-GFYVHKLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKF 621
Query: 566 LQTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRIK 603
++ + +S L+F+ + +L+AY L RIK
Sbjct: 622 VEEDVAGQISPATSVSVLIFMFVGYRLLAYLALR-RIK 658
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 182 bits (463), Expect = 5e-54
Identities = 85/231 (36%), Positives = 128/231 (55%), Gaps = 44/231 (19%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
+ +K+L YTV K + +L N+ G L A+MG SGAGK++LLDVL+G ++
Sbjct: 4 LTWKNLNYTVPV----KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA 59
Query: 89 G-VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG 147
G +TG+IL NG + N F+R + Y++Q D P LT+ + S+ L G
Sbjct: 60 GVITGEILINGRPLDKN-FQRSTGYVEQQDVHSPNLTVREALRF----------SALLRG 108
Query: 148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207
LS+ Q+KRL+I +EL P ++FLDEPT+GLDS
Sbjct: 109 -----LSVE----------------------QRKRLTIGVELAAKPSILFLDEPTSGLDS 141
Query: 208 QSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL-SGGQCLYQG 257
Q+ ++ LK ++ G+ I+CTIHQPSA++F+ FD++ LL GG+ +Y G
Sbjct: 142 QAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein.
[Transport and binding proteins, Other].
Length = 1394
Score = 189 bits (481), Expect = 9e-51
Identities = 171/684 (25%), Positives = 277/684 (40%), Gaps = 138/684 (20%)
Query: 21 LETADRIEIKF-KDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
+E +I ++LTY V K+E + +L N+ G L A+MG SGAGK++LL
Sbjct: 751 MEKESGEDIFHWRNLTYEV----KIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLL 806
Query: 80 DVLSGYRSNGV--TGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDES 137
+VL+ + GV G L NG + ++F+R Y+QQ D P T+ L S
Sbjct: 807 NVLAERVTTGVITGGDRLVNGRPLD-SSFQRSIGYVQQQDLHLPTSTVRE-----SLRFS 860
Query: 138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT----------SNPN-DQKKRLSIA 186
R Q K +S + ++ V+ L E + N +Q+KRL+I
Sbjct: 861 AYLR-------QPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIG 913
Query: 187 LELINNPR-VMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV 245
+EL+ P+ ++FLDEPT+GLDSQ+ KL++ ++ G+ I+CTIHQPSA LF+ FD++
Sbjct: 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRL 973
Query: 246 YLLS-GGQCLYQGATDQ----LVNYLSSVNLP-CPKYHNPADFVIE-------------- 285
LL GGQ +Y G + ++NY P CP+ NPA++++E
Sbjct: 974 LLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDY 1033
Query: 286 ----LASGEYG-----VDNINAMVEQAQNDVKPDKKTKKTKHCTYSNQILQDTSYSNQLG 336
S EY +D + A + +A++D PD +K Y+ S Q
Sbjct: 1034 HEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSK------YA------ASLWYQFK 1081
Query: 337 VLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHV 396
++L R + R + + + IF AL +G F G + N +F++ + V
Sbjct: 1082 LVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGL---QNQMFAVFMATV 1138
Query: 397 MTSMMLNILTFPM---EMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVY- 452
+ + ++ P ++E +R +S A+ + ++IP +F I Y
Sbjct: 1139 LFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYY 1198
Query: 453 PL--------TGQPMELTRFTMFNCTSLLVVF--IAQSVGYM--VGAVFNVVNGTFVGPV 500
P+ TGQ E T + F + Q V V+
Sbjct: 1199 PVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFT-- 1256
Query: 501 LVVPMMMFSGFGVSINDIPKY---MRWGSELSYLRYGL---------------------- 535
+ F G + +P + M S +YL L
Sbjct: 1257 ---MCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNP 1313
Query: 536 ----------EGY--VAAIYGLD-RKTLQCDELYCHYKEPKKFLQTVSQPSDNFWSSSVT 582
+ Y A Y L+ T C +C Y FL+ +S W +
Sbjct: 1314 PSGQTCGEYMKPYLENAGGYLLNPNATDSCS--FCQYSYTNDFLEPISSKYSGRW-RNFG 1370
Query: 583 LVFILIVMKLIAYFFLSWRIKVMR 606
+ I +IA F W +V +
Sbjct: 1371 IFIAFIFFNIIATVFFYWLARVPK 1394
Score = 141 bits (358), Expect = 4e-35
Identities = 119/575 (20%), Positives = 212/575 (36%), Gaps = 122/575 (21%)
Query: 45 KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--YRSN-GVTGQILTNGHSR 101
+ D+LK + G +L ++G G+G S+LL ++ + GV G I +G +
Sbjct: 70 DTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITP 129
Query: 102 N--INAFRRVSCYIQQDDRLQPLLTIEN------------------------------VM 129
+R Y + D P LT+ M
Sbjct: 130 EEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYM 189
Query: 130 SLLGLDESQNTRSSQ-----LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184
+ GL ++NT+ +SGG++KR+SIA E
Sbjct: 190 ATYGLSHTRNTKVGNDFVRGVSGGERKRVSIA-EAS------------------------ 224
Query: 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTIICTIHQPSATLFQMFD 243
+ ++ D T GLDS + + I+ LK + T + I+Q S +++FD
Sbjct: 225 -----LGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFD 279
Query: 244 QVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASG---EYGVDNINAMV 300
+V +L G +Y G D+ Y + CP ADF+ L S + +
Sbjct: 280 KVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVP 339
Query: 301 EQAQN------------------DVKPDKKTKKTKHCTYSNQILQD------------TS 330
Q D D+ ++ Y + S
Sbjct: 340 RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVS 399
Query: 331 YSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYN-LLF 389
+S Q+ L+R L++K + + T + NI +AL+L +F N + S L F
Sbjct: 400 FSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFF 459
Query: 390 SILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSL---KAYYVSVNLLDIPVAGFCCLL 446
+IL + S +L I + I+ K +R Y+L A ++ + +IP ++
Sbjct: 460 AILFN--AFSSLLEIASMYEARPIVEK---HRKYALYHPSADAIASIISEIPFKIIESVV 514
Query: 447 FTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVG----YMVGAVFNVVNGTFV-GPVL 501
F I+Y + RF LL++FI +GAV ++ +L
Sbjct: 515 FNIILYFMVNFRRTAGRFF----FYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAIL 570
Query: 502 VVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLE 536
++ + +++GF + + + +W ++ L Y E
Sbjct: 571 LLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFE 605
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 168 bits (427), Expect = 2e-48
Identities = 76/224 (33%), Positives = 124/224 (55%), Gaps = 14/224 (6%)
Query: 41 GLGFKQEPK--DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG--VTGQILT 96
GL K K +L ++ S Q++AI+G SG+GK++LLD +SG G +GQIL
Sbjct: 10 GLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILF 69
Query: 97 NGHSRNINAFRRVSCYIQQDDRLQPLLTIENV---MSLLGLDESQNTRSSQLSGGQKKRL 153
NG R + F++ Y++QDD L P LT+ ++L L + +
Sbjct: 70 NGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLR 129
Query: 154 SIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC 213
+AL I V + +++R+SIA++L+ +P+V+ LDEPT+GLDS +
Sbjct: 130 DLALTRIGGNLVKGIS-------GGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNL 182
Query: 214 IKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
+ L ++++ R +I TIHQP + LF++FD++ LLS G+ +Y G
Sbjct: 183 VSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 140 bits (354), Expect = 3e-37
Identities = 68/295 (23%), Positives = 123/295 (41%), Gaps = 57/295 (19%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS--RNINAF 106
K L + ++ ++GP+GAGK++LL +L+G +G+IL G+ +
Sbjct: 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG-LLKPTSGEILVLGYDVVKEPAKV 76
Query: 107 RRVSCYIQQDDRLQPLLT----------------------IENVMSLLGLDESQNTRSSQ 144
RR Y+ Q+ L P LT IE ++ L GL++ N +
Sbjct: 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRT 136
Query: 145 LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTG 204
LSGG K+RLSIAL L+++P ++ LDEPT +G
Sbjct: 137 LSGGMKQRLSIALALLHDPELLILDEPT------------------------------SG 166
Query: 205 LDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
LD +S + +LL+ ++++G I ++ D+V +L+ G+ + +G ++L
Sbjct: 167 LDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226
Query: 265 YLSSVNLPC-PKYHNPADFVIELASGEYGVDNINAMVEQA-QNDVKPDKKTKKTK 317
+ ++E G + + ++E + VK + K
Sbjct: 227 KFGGKGVIELEPERLELAELLEGLKLVKGEEELAEILEALLEEGVKIESIEVKEP 281
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 148 bits (374), Expect = 4e-37
Identities = 142/538 (26%), Positives = 248/538 (46%), Gaps = 63/538 (11%)
Query: 31 FKDLTYTVSTGLGFKQE--PKD---VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85
F D+ Y V K++ +D +L+ + G F L A+MG SGAGK++L+DVL+G
Sbjct: 870 FDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR 929
Query: 86 RSNG-VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQ 144
++ G + G I +G + F R+S Y +Q+D P +T+ SL+ S R +
Sbjct: 930 KTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRE--SLI---YSAFLRLPK 984
Query: 145 LSGGQKKRLSI--ALELI--NNPRVMFLDEP-TTSNPNDQKKRLSIALELINNPRVMFLD 199
++K + + +EL+ +N + + P T +Q+KRL+IA+EL+ NP ++F+D
Sbjct: 985 EVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMD 1044
Query: 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLS-GGQCLYQGA 258
EPT+GLD+++ + ++ ++ GRT++CTIHQPS +F+ FD++ L+ GGQ +Y G
Sbjct: 1045 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGP 1104
Query: 259 TDQ----LVNYLSSV-NLP-CPKYHNPADFVIELAS----GEYGVD-----NINAMVEQA 303
+ ++ Y ++ +P + +NPA +++E++S + G+D +++ ++
Sbjct: 1105 LGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRN 1164
Query: 304 QNDVK----PDKKTKKTKHCTYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIV 359
+ VK P T +Q S Q L + R +R
Sbjct: 1165 KALVKELSTPPPGASDLYFATQYSQ-----STWGQFKSCLWKQWWTYWRSPDYNLVRFFF 1219
Query: 360 NIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTF-PM---EMSILI 415
+ ALM+G +F G S+ + ++ + V+ + N T PM E ++
Sbjct: 1220 TLAAALMVGTIFWKVGTKRSNAN-DLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFY 1278
Query: 416 KEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVV 475
+E YS Y ++ + +IP +T IVY + +F F S
Sbjct: 1279 RERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSF 1338
Query: 476 FIAQSVGYM---------VGAVFNVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRW 524
G M V A+F F G +FSGF + IPK+ W
Sbjct: 1339 LYFTYYGMMTVSLTPNQQVAAIF---AAAFYG-----LFNLFSGFFIPRPKIPKWWVW 1388
Score = 115 bits (289), Expect = 1e-26
Identities = 139/588 (23%), Positives = 249/588 (42%), Gaps = 120/588 (20%)
Query: 41 GLGFKQEPK-DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--RSNGVTGQILTN 97
G+ ++ K +LK+ G +++ ++GP +GK++LL L+G S V+G+I N
Sbjct: 169 GINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYN 228
Query: 98 GHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRS---SQLSGGQKKR-- 152
G+ N R+ S YI Q+D ++T++ + + TR S+L+ +K
Sbjct: 229 GYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGI 288
Query: 153 ----------LSIALE-----LINNPRVMFL-----------DEPTTSNPNDQKKRLSIA 186
+ A+E LI + + L DE QKKR++
Sbjct: 289 FPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG 348
Query: 187 LELINNP-RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR-TIICTIHQPSATLFQMFDQ 244
E+I P + +F+DE +TGLDS + Q +K L+ I T++ ++ QP+ F +FD
Sbjct: 349 -EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDD 407
Query: 245 VYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASG----EYGVD------ 294
+ LLS GQ +YQG D ++ + S CP+ ADF+ E+ S +Y D
Sbjct: 408 IILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYR 467
Query: 295 --NINAMVE---------QAQNDVK-PDKKTKKTKHCTYSNQILQDTSYS----NQLGVL 338
+++ E Q +N++ P K++ K L + YS L
Sbjct: 468 YISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAA------LVFSKYSVPKMELLKAC 521
Query: 339 LSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLF-------QNSGEYASSVLINYNLLFSI 391
+ L +KR++ + + + I VA + +F +N + A +
Sbjct: 522 WDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGA------------L 569
Query: 392 LIHHVMTSMMLNILTFPMEMSILIKE------------HFNRWYSLKAYYVSVNLLDIPV 439
I ++ SM++N+ E++++I+ H ++L + LL IP+
Sbjct: 570 YIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTF-----LLGIPI 624
Query: 440 AGFCCLLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTF--- 496
+ +++ I Y G E +RF LL+VF+ Q M +F ++
Sbjct: 625 SIIESVVWVVITYYSIGFAPEASRFF----KQLLLVFLIQQ---MAAGIFRLIASVCRTM 677
Query: 497 ----VGPVLVVPMM-MFSGFGVSINDIPKYMRWGSELSYLRYGLEGYV 539
G LV+ ++ + GF + +IP + W +S L YG
Sbjct: 678 IIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALA 725
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter.
Length = 210
Score = 135 bits (343), Expect = 1e-36
Identities = 59/212 (27%), Positives = 111/212 (52%), Gaps = 5/212 (2%)
Query: 334 QLGVLLSRGLLKVKRDSTLTHL-RIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSIL 392
QL LL R L+ RD +L L R+I + +AL+ G +F N + LLF +
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLNRPG-LLFFSI 60
Query: 393 IHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVY 452
+ + +S+ F E +L +E + YS AY ++ L+++P++ ++F IVY
Sbjct: 61 LFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVY 120
Query: 453 PLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVF-NVVNGTFVGPVLVVPMMMFSGF 511
+ G P+ +RF +F LL A +G + A+ + + + +GP+L++P+++ SGF
Sbjct: 121 FMVGLPV--SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGF 178
Query: 512 GVSINDIPKYMRWGSELSYLRYGLEGYVAAIY 543
+ ++ +P +++W L+ L Y +E A +
Sbjct: 179 FIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 112 bits (284), Expect = 2e-28
Identities = 57/250 (22%), Positives = 106/250 (42%), Gaps = 66/250 (26%)
Query: 30 KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG 89
+ K+L+++ + + L ++ + + I+GP+G+GKS+LL +L+G
Sbjct: 1 ELKNLSFS------YPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP- 53
Query: 90 VTGQILTNG---HSRNINAFRRVSCYIQQDDRLQPLLT---------------------- 124
+G++L +G ++ RR + Q+ Q
Sbjct: 54 TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQ-FFGPTVEEEVAFGLENLGLPEEEIE 112
Query: 125 --IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKR 182
+E + L+GL+ ++ LSGGQK+R++IA
Sbjct: 113 ERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIA-------------------------- 146
Query: 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF 242
+ L +P ++ LDEPT GLD + ++LLK + +G+TII H L ++
Sbjct: 147 -GV---LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELA 201
Query: 243 DQVYLLSGGQ 252
D+V +L G+
Sbjct: 202 DRVIVLEDGK 211
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 105 bits (264), Expect = 8e-26
Identities = 69/257 (26%), Positives = 112/257 (43%), Gaps = 73/257 (28%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG---- 84
I+ K+L+ T G E LK + + +AI+GPSG+GKS+LL++L G
Sbjct: 1 IELKNLSKTYGGG----GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP 56
Query: 85 ----YRSNGVTGQILTNGHSRNINAFRR--VSCYIQQDDRLQPLLTI-ENVM-------- 129
R +G ++ + + AFRR + ++ Q L P LT ENV
Sbjct: 57 TSGEVRVDGTD---ISKLSEKELAAFRRRHIG-FVFQSFNLLPDLTALENVELPLLLAGV 112
Query: 130 -------------SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
+GL + N S+LSGGQ++R++IA
Sbjct: 113 PKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIA-------------------- 152
Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL-KMISQQGRTIICTIHQPS 235
R L N+P+++ DEPT LDS++ + ++LL ++ + G TI+ H P
Sbjct: 153 -----RA-----LANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202
Query: 236 ATLFQMFDQVYLLSGGQ 252
L + D++ L G+
Sbjct: 203 --LAEYADRIIELRDGK 217
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 103 bits (260), Expect = 1e-25
Identities = 53/224 (23%), Positives = 106/224 (47%), Gaps = 54/224 (24%)
Query: 41 GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS 100
L + VL +L + +++ I+GP+GAGKS+LL L+G +G+IL +G
Sbjct: 4 NLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDG-- 60
Query: 101 RNINAF------RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS 154
+++ + R+++ Y+ Q + LLGL + ++LSGG+++R+
Sbjct: 61 KDLASLSPKELARKIA-YVPQ------------ALELLGLAHLADRPFNELSGGERQRVL 107
Query: 155 IALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI 214
+A L P ++ LDEPT+ L++ + ++
Sbjct: 108 LARALAQEPPILLLDEPTS------------HLDIAHQIELL------------------ 137
Query: 215 KLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
+LL+ ++++ G+T++ +H + + D+V LL G+ + QG
Sbjct: 138 ELLRRLARERGKTVVMVLHDLNLAA-RYADRVILLKDGRIVAQG 180
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 103 bits (260), Expect = 1e-25
Identities = 61/231 (26%), Positives = 111/231 (48%), Gaps = 67/231 (29%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+FK++++ + PK VLK++ + +AI+GPSG+GKS+LL +L
Sbjct: 1 IEFKNVSF------SYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP 54
Query: 89 GVTGQILTNGHS-RNIN--AFRRVSCYIQQDDRLQPLL---TI-ENVMSLLGLDESQNTR 141
+G+IL +G R+++ + R+ Y+ QD P L TI EN+
Sbjct: 55 -TSGEILIDGVDLRDLDLESLRKNIAYVPQD----PFLFSGTIRENI------------- 96
Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201
LSGGQ++R++IA R L+ +P ++ LDE
Sbjct: 97 ---LSGGQRQRIAIA-------RA-----------------------LLRDPPILILDEA 123
Query: 202 TTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252
T+ LD ++ + ++ L+ ++ +G+T+I H+ S + D++ +L G+
Sbjct: 124 TSALDPETEALILEALRALA-KGKTVIVIAHRLS--TIRDADRIIVLDDGR 171
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 103 bits (260), Expect = 2e-25
Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 38/215 (17%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN--GVTGQILTNGHSRNINA- 105
+LK+ G +++ ++G G+G S+LL L+ V G I NG A
Sbjct: 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAE 79
Query: 106 -FRRVSCYIQQDDRLQPLLTIENVMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNP 163
+ Y+ ++D P LT+ + L ++ R +SGG++K
Sbjct: 80 KYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRG--ISGGERK------------ 125
Query: 164 RVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ 223
R+SIA L++ V+ D T GLDS + + +K ++ ++
Sbjct: 126 ------------------RVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADV 167
Query: 224 -GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
T +++Q S ++ +FD+V +L G+ +Y G
Sbjct: 168 LKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 104 bits (262), Expect = 2e-25
Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 56/213 (26%)
Query: 44 FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS--R 101
+K+ K + +L ++ ++G +GAGK++ L +L+G +G NG+S
Sbjct: 10 YKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG-ELRPTSGTAYINGYSIRT 68
Query: 102 NINAFRRVSCYIQQDDRLQPLLT----------------------IENVMSLLGLDESQN 139
+ A R+ Y Q D L LT +E ++ +LGL + N
Sbjct: 69 DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN 128
Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD 199
R+ LSGG K++LS+A IA LI P V+ LD
Sbjct: 129 KRARTLSGGMKRKLSLA----------------------------IA--LIGGPSVLLLD 158
Query: 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH 232
EPT+GLD S L+ + ++GR+II T H
Sbjct: 159 EPTSGLDPASRRAIWDLILEV-RKGRSIILTTH 190
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 103 bits (260), Expect = 5e-25
Identities = 70/271 (25%), Positives = 114/271 (42%), Gaps = 76/271 (28%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+ ++L+ T G K LK++ + +A++GPSGAGKS+LL L+G
Sbjct: 1 IEVENLSKTYPNG-------KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL-VE 52
Query: 89 GVTGQILTNGHSRN------INAFRRVSCYIQQDDRLQPLLT-IENVMS----------- 130
+G +L +G N + RR I Q L L+ +ENV+S
Sbjct: 53 PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRS 112
Query: 131 ------------------LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
+GL + R+ QLSGGQ++R++IA L+ P+++ DEP
Sbjct: 113 LFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV 172
Query: 173 TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTI 231
S LD S Q + LLK I+++ G T+I ++
Sbjct: 173 AS------------------------------LDPASSRQVMDLLKRINREEGITVIVSL 202
Query: 232 HQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
HQ + D++ L G+ ++ G +L
Sbjct: 203 HQVDLAR-EYADRIVGLKDGRIVFDGPPAEL 232
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 100 bits (253), Expect = 8e-25
Identities = 50/207 (24%), Positives = 96/207 (46%), Gaps = 50/207 (24%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS--RNINAF 106
K L ++ ++ ++GP+GAGK++L+ ++ G +G+I G +
Sbjct: 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKDIKKEPEEV 71
Query: 107 RRVSCYIQQDDRLQPLLT-IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV 165
+R Y+ ++ L LT EN+ +LSGG K+RL++A
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENL---------------KLSGGMKQRLALA--------- 107
Query: 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
AL +++P ++ LDEPT+GLD +S + +LL+ + ++G+
Sbjct: 108 -------------------QAL--LHDPELLILDEPTSGLDPESRREFWELLRELKKEGK 146
Query: 226 TIICTIHQPSATLFQMFDQVYLLSGGQ 252
TI+ + H ++ D+V +L+ G+
Sbjct: 147 TILLSSHILE-EAERLCDRVAILNNGR 172
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 100 bits (250), Expect = 1e-24
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 60/214 (28%)
Query: 40 TGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNG 98
L F+ + L N+ + +++A++GP+G+GKS+LL ++G + G+IL +G
Sbjct: 3 ENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS--GEILIDG 60
Query: 99 HSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE 158
D PL + + + QLSGGQ++R+++A
Sbjct: 61 K----------------DIAKLPLEELRRRIGYV----------PQLSGGQRQRVALARA 94
Query: 159 LINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK 218
L+ NP ++ LDEP T+GLD S + ++LL+
Sbjct: 95 LLLNPDLLLLDEP------------------------------TSGLDPASRERLLELLR 124
Query: 219 MISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252
++++GRT+I H P D+V +L G+
Sbjct: 125 ELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 101 bits (255), Expect = 3e-24
Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 25/246 (10%)
Query: 25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG 84
I+ ++LT + + P VL+++ ++ A++GP+GAGKS+LL + G
Sbjct: 1 MMPMIEVENLTVS------YGNRP--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILG 52
Query: 85 YRSNGVTGQILTNG-HSRNINAFRRVSCYIQQD---DRLQPLLTIENVMSLLGLDESQNT 140
+G+I G R R+ Y+ Q DR P+ T+++V+ L +
Sbjct: 53 LLKP-SSGEIKIFGKPVRKRRKRLRIG-YVPQKSSVDRSFPI-TVKDVVLLGRYGKKGWF 109
Query: 141 RSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQKKRLSIALELINNPRVMFL 198
R L+ K+++ ALE + M D QK+R+ +A L NP ++ L
Sbjct: 110 RR--LNKKDKEKVDEALERVG----MEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLL 163
Query: 199 DEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258
DEP TG+D + LLK + Q+G+T++ H + FD+V L+ G
Sbjct: 164 DEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLNRHLIAS-GP 221
Query: 259 TDQLVN 264
++++
Sbjct: 222 PEEVLT 227
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 105 bits (264), Expect = 1e-23
Identities = 67/266 (25%), Positives = 117/266 (43%), Gaps = 69/266 (25%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
EI+F+++++ + + VL++L P + +AI+G SG+GKS+LL +L G
Sbjct: 471 EIEFENVSFR------YGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK 524
Query: 88 NGVTGQILTNGHSRNI---NAFRRVSCYIQQDDRLQ------------PLLTIENVMSLL 132
G+IL +G N + RR Y+ QD L P T E ++
Sbjct: 525 P-QQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAA 583
Query: 133 --------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
G D + LSGGQ++RL++A
Sbjct: 584 QLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALA---------------------- 621
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
R L++ P+++ LDE T+ LD ++ + ++ L I QGRT+I H+ S
Sbjct: 622 ---RA-----LLSKPKILLLDEATSALDPETEAIILQNLLQI-LQGRTVIIIAHRLS--T 670
Query: 239 FQMFDQVYLLSGGQCLYQGATDQLVN 264
+ D++ +L G+ + QG+ ++L+
Sbjct: 671 IRSADRIIVLDQGKIVEQGSHEELLA 696
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 98.7 bits (247), Expect = 2e-23
Identities = 70/254 (27%), Positives = 121/254 (47%), Gaps = 66/254 (25%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR-- 86
I+ K+++ G + LK++ + + +AI+GPSG+GKS+LL++L G
Sbjct: 2 IELKNVSKIYGLGGEKVE----ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP 57
Query: 87 SNG---VTGQILTNGHSRNINAFRRVSC-YIQQDDRLQPLLTI-ENVM------------ 129
++G + G+ LT + + RR ++ Q+ L P LT+ ENV
Sbjct: 58 TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGR 117
Query: 130 ---------SLLGLDESQNT-RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQ 179
+LGL++ + S+LSGGQ++R++IA R
Sbjct: 118 RKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA-------RA-------------- 156
Query: 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATL 238
LINNP+++ DEPT LDS++ + ++LL+ ++++ G+TII H P L
Sbjct: 157 ---------LINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--EL 205
Query: 239 FQMFDQVYLLSGGQ 252
+ D+V L G+
Sbjct: 206 AKYADRVIELKDGK 219
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 95.4 bits (238), Expect = 3e-22
Identities = 60/268 (22%), Positives = 111/268 (41%), Gaps = 75/268 (27%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+ ++L++ K LK++ + + ++GP+G+GKS+LL +L N
Sbjct: 4 IEAENLSFRYPGR-------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLL-----N 51
Query: 89 GV----TGQILTNG----HSRNINAFRRVSCYIQQDDRLQ-------------PLLT--- 124
G+ +G++L +G +++ R+ + Q+ Q
Sbjct: 52 GLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLP 111
Query: 125 -------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
+ + L+GL+E + LSGGQK+R++IA
Sbjct: 112 REEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIA--------------------- 150
Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL-KMISQQGRTIICTIHQPSA 236
+ L P ++ LDEPT GLD + + ++LL K+ + G+TII H
Sbjct: 151 ------GV---LAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE- 200
Query: 237 TLFQMFDQVYLLSGGQCLYQGATDQLVN 264
+ + D+V +L G+ L G ++ N
Sbjct: 201 LVLEYADRVVVLDDGKILADGDPAEIFN 228
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 93.0 bits (232), Expect = 1e-21
Identities = 51/235 (21%), Positives = 96/235 (40%), Gaps = 62/235 (26%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS--RNINAF 106
K L + + ++GP+GAGK++L+ +L+ +G I +G +
Sbjct: 13 KRALDGVSLTLG-PGMYGLLGPNGAGKTTLMRILATLTPP-SSGTIRIDGQDVLKQPQKL 70
Query: 107 RRVSCYIQQDDRLQPLLT----------------------IENVMSLLGLDESQNTRSSQ 144
RR Y+ Q+ + P T ++ V+ L+ L + +
Sbjct: 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGS 130
Query: 145 LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTG 204
LSGG ++R+ IA L+ +P + LI +DEPT G
Sbjct: 131 LSGGMRRRVGIAQALVGDPSI-----------------------LI-------VDEPTAG 160
Query: 205 LDSQSCSQCIKLLKMISQQG--RTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
LD + + I+ ++S+ G R +I + H + +QV +L+ G+ +++G
Sbjct: 161 LDPE---ERIRFRNLLSELGEDRIVILSTHIVEDVES-LCNQVAVLNKGKLVFEG 211
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 90.7 bits (226), Expect = 4e-21
Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 60/231 (25%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
++ K+++ + Q K VL ++ + +++A++GPSG+GKS+LL ++G
Sbjct: 1 LELKNVSKR------YGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP 52
Query: 89 GVTGQILTNG-----HSRNINAFRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRS 142
+G IL +G + RR + QD L P LT+ EN+ LGL
Sbjct: 53 -DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIA--LGL-------- 101
Query: 143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202
SGGQ++R+++A R L +P V+ LDEPT
Sbjct: 102 ---SGGQQQRVALA-------RA-----------------------LAMDPDVLLLDEPT 128
Query: 203 TGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQ 252
+ LD + + LLK + Q G T++ H ++ D+V +L G+
Sbjct: 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 91.4 bits (228), Expect = 5e-21
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 29/165 (17%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
++ ++++ T G L+++ + +A++GPSG GKS+LL +++G
Sbjct: 1 LEVRNVSKT----YGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL-ER 55
Query: 89 GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-ENVM------------------ 129
+G++L +G + Y+ Q D L P LT+ +NV
Sbjct: 56 PTSGEVLVDG--EPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAE 113
Query: 130 ---SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
L+GL +N QLSGG ++R+++A L +P V+ LDEP
Sbjct: 114 ELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEP 158
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 90.8 bits (226), Expect = 8e-21
Identities = 55/218 (25%), Positives = 103/218 (47%), Gaps = 24/218 (11%)
Query: 41 GLGFKQEPK-DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNG 98
+ F + ++L +L + ++IA+ G +GAGK++L +L+G + + G IL NG
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS--GSILLNG 61
Query: 99 HSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE 158
R+ Y+ QD Q L ++V L L + ++ L+
Sbjct: 62 KPIKAKERRKSIGYVMQDVDYQ--LFTDSVREELLL-------GLKELDAGNEQAETVLK 112
Query: 159 LINNPRVMFLDEPTTSNPND----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI 214
++ L +P QK+RL+IA L++ ++ DEPT+GLD ++ +
Sbjct: 113 DLD------LYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG 166
Query: 215 KLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252
+L++ ++ QG+ +I H L ++ D+V LL+ G
Sbjct: 167 ELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGA 203
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 95.8 bits (239), Expect = 9e-21
Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 39/261 (14%)
Query: 16 ESGTSLETA--DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGA 73
SG E A IEI ++L++ G K L +L + QL A++G SGA
Sbjct: 306 GSGEKAEVANEPPIEISLENLSFRYPDG-------KPALSDLNLTIKAGQLTALVGASGA 358
Query: 74 GKSSLLDVLSGYRSNGVTGQILTNGHSR---NINAFRRVSCYIQQDDRLQPLL---TI-E 126
GKS+LL++L G+ + G+I NG + A+R+ ++ Q P L TI E
Sbjct: 359 GKSTLLNLLLGFLA-PTQGEIRVNGIDLRDLSPEAWRKQISWVSQ----NPYLFAGTIRE 413
Query: 127 NV-MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND----QKK 181
N+ ++ + + + +G LE + P LD Q +
Sbjct: 414 NILLARPDASDEEIIAALDQAG--------LLEFVPKPDG--LDTVIGEGGAGLSGGQAQ 463
Query: 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM 241
RL++A L++ ++ LDEPT LD+++ ++ L+ +++Q ++ T H+
Sbjct: 464 RLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVIT-HRL-EDAADA 521
Query: 242 FDQVYLLSGGQCLYQGATDQL 262
D++ +L G+ + QG ++L
Sbjct: 522 -DRIVVLDNGRLVEQGTHEEL 541
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 91.1 bits (227), Expect = 2e-20
Identities = 57/248 (22%), Positives = 109/248 (43%), Gaps = 17/248 (6%)
Query: 41 GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG-- 98
L F K +L +L P ++ I+GP+G+GKS+LL L+G +G++L +G
Sbjct: 7 NLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK-SGEVLLDGKD 65
Query: 99 -HSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIAL 157
S + + Y+ Q LT+ ++ L + K+ I
Sbjct: 66 IASLSPKELAKKLAYVPQSPSAPFGLTVYELVLL-----GRYPHLGLFGRPSKEDEEIVE 120
Query: 158 ELINNPRVM-FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL 216
E + + D P +++R+ IA L ++ LDEPT+ LD + ++L
Sbjct: 121 EALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL 180
Query: 217 LKMISQ-QGRTIICTIHQPS-ATLFQMFDQVYLLSGGQCLYQGATDQLVN--YLSSV-NL 271
L+ +++ +G T++ +H + A + D + LL G+ + QG ++++ L V +
Sbjct: 181 LRDLNREKGLTVVMVLHDLNLAARYA--DHLILLKDGKIVAQGTPEEVLTEENLREVYGV 238
Query: 272 PCPKYHNP 279
+P
Sbjct: 239 DADVIEDP 246
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 90.3 bits (225), Expect = 3e-20
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 25/143 (17%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVS 110
VL+++ + +AI+GPSG GKS+LL +++G +G++L +G R +
Sbjct: 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL-EKPTSGEVLLDG--RPVTGPGPDI 74
Query: 111 CYIQQDDRLQPLLTI-ENVM------------------SLL---GLDESQNTRSSQLSGG 148
Y+ Q+D L P LT+ +NV LL GL ++ QLSGG
Sbjct: 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGG 134
Query: 149 QKKRLSIALELINNPRVMFLDEP 171
++R++IA L P+++ LDEP
Sbjct: 135 MRQRVAIARALATRPKLLLLDEP 157
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 89.7 bits (223), Expect = 4e-20
Identities = 68/274 (24%), Positives = 112/274 (40%), Gaps = 76/274 (27%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR-- 86
++ ++L+ G K LKN+ + +AI+GPSGAGKS+LL ++
Sbjct: 2 LEVENLSKVYPNG-------KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP 54
Query: 87 SNG---VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT-IENVMS------------ 130
S+G + G +T + + RR I Q L LT +ENV+
Sbjct: 55 SSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSL 114
Query: 131 -----------------LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
+GL + R+ QLSGGQ++R++IA L P ++ DEP
Sbjct: 115 LGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIA 174
Query: 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIH 232
S LD ++ Q + LK I+++ G T+I +H
Sbjct: 175 S------------------------------LDPKTSKQVMDYLKRINKEDGITVIINLH 204
Query: 233 QPS-ATLFQMFDQVYLLSGGQCLYQGATDQLVNY 265
Q A + D++ L G+ ++ GA +L +
Sbjct: 205 QVDLAKKYA--DRIVGLKAGEIVFDGAPSELDDE 236
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 90.5 bits (224), Expect = 4e-20
Identities = 71/231 (30%), Positives = 110/231 (47%), Gaps = 26/231 (11%)
Query: 39 STGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTN 97
++ L F+ + + VLK L F + + ++G +G GKS+L LSG R G +L
Sbjct: 4 TSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ--KGAVLWQ 61
Query: 98 GHS-----RNINAFRRVSCYIQQDDRLQPLLT-----IENVMSLLGLDESQNTRSSQLSG 147
G R + A R+ + QD Q T I + LG+ E++ TR
Sbjct: 62 GKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITR------ 115
Query: 148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207
R+ AL L++ F +P + QKKR++IA L+ R + LDEPT GLD
Sbjct: 116 ----RVDEALTLVDAQH--FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDP 169
Query: 208 QSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGA 258
+Q I +++ I QG +I + H ++++ D VY+L GQ L GA
Sbjct: 170 AGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGA 219
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 90.0 bits (224), Expect = 4e-20
Identities = 69/251 (27%), Positives = 111/251 (44%), Gaps = 69/251 (27%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH------SRN 102
LK++ +++AI+GPSGAGKS+LL L+G + +G+IL NG +
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG-LVDPTSGEILFNGVQITKLKGKE 75
Query: 103 INAFRRVSCYIQQDDRLQPLLT-IENVM-----------SLLGL----DESQ-------- 138
+ RR I Q L P L+ +ENV+ SL GL D++Q
Sbjct: 76 LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV 135
Query: 139 ------NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINN 192
R+S LSGGQ++R++IA L+ P+++ DEP S
Sbjct: 136 GILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVAS------------------ 177
Query: 193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGG 251
LD + + + +LK I+Q+ G T+I +HQ + D++ L G
Sbjct: 178 -----LDPESAK-------KVMDILKDINQEDGITVIVNLHQVDLAK-KYADRIIGLKAG 224
Query: 252 QCLYQGATDQL 262
+ ++ G +L
Sbjct: 225 RIVFDGPASEL 235
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 86.4 bits (215), Expect = 4e-19
Identities = 67/274 (24%), Positives = 113/274 (41%), Gaps = 86/274 (31%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRS 87
I+ + LT + + VLK + +++AI+GPSG+GKS+LL ++ G R
Sbjct: 1 IELRGLTKSFGG--------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP 52
Query: 88 NGVTGQILTNGH-------SRNINAFRRVSCYIQQ----DDRLQPLLTI-ENV------- 128
+ G++L +G + RR+ Q D LT+ ENV
Sbjct: 53 DS--GEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDS-----LTVFENVAFPLREH 105
Query: 129 ---------------MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
+ +GL +++ ++LSGG KKR+++A
Sbjct: 106 TRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALA----------------- 148
Query: 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLD---SQSCSQCIKLLKMISQQGRTIICT 230
R ++AL +P ++ DEPT GLD S I+ LK + G T I
Sbjct: 149 --------R-ALAL----DPELLLYDEPTAGLDPIASGVIDDLIRSLKK--ELGLTSIMV 193
Query: 231 IHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
H T F + D++ +L G+ + +G ++L
Sbjct: 194 THDLD-TAFAIADRIAVLYDGKIVAEGTPEELRA 226
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 85.9 bits (213), Expect = 5e-19
Identities = 59/235 (25%), Positives = 108/235 (45%), Gaps = 51/235 (21%)
Query: 44 FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI 103
F ++ + N+ P N + ++GP+GAGKS+LL +++G +G+I+ +GH
Sbjct: 10 FGKQ--TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP-TSGEIIFDGHPWTR 66
Query: 104 NAFRRVSCYIQQD---------DRLQ--------PLLTIENVMSLLGLDESQNTRSSQLS 146
++ I+ + L+ P I+ V++++ L + ++ Q S
Sbjct: 67 KDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFS 126
Query: 147 GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206
G K+RL IA IAL +N+P+++ LDEPT GLD
Sbjct: 127 LGMKQRLGIA----------------------------IAL--LNHPKLLILDEPTNGLD 156
Query: 207 SQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261
+ +L++ +QG T+I + H S + Q+ D + ++S G YQG ++
Sbjct: 157 PIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 85.4 bits (212), Expect = 6e-19
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 23/196 (11%)
Query: 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH------SRNI 103
L ++ + + + GPSGAGK++LL +L G + GQ+ G R +
Sbjct: 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-PSRGQVRIAGEDVNRLRGRQL 74
Query: 104 NAFRRVSCYIQQDDRLQPLLTI-ENV---MSLLGLDESQNTRSSQLSGGQKKRLSIALEL 159
RR + QD RL P T+ ENV + + G E R Q +R+ AL
Sbjct: 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKE----REIQ------RRVGAALRQ 124
Query: 160 INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKM 219
+ S Q R++IA ++N+P ++ DEPT LD + + LLK
Sbjct: 125 VGLEHKADAFPEQLSGGEQQ--RVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKR 182
Query: 220 ISQQGRTIICTIHQPS 235
++++G T+I H S
Sbjct: 183 LNKRGTTVIVATHDLS 198
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 90.3 bits (225), Expect = 6e-19
Identities = 73/294 (24%), Positives = 121/294 (41%), Gaps = 79/294 (26%)
Query: 4 VEFELSNSLSSSESGT-SLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSN 62
V F L L+ + G L + D + I+ +DL + K + L P+
Sbjct: 325 VTF-LETPLAHPQQGEKELASNDPVTIEAEDLEI-------LSPDGKTLAGPLNFTLPAG 376
Query: 63 QLIAIMGPSGAGKSSLLDVLSG---YRSNGVTGQILTNG---HSRNINAFRRVSCYIQQD 116
Q IA++GPSGAGK+SLL+ L G Y+ G + NG + ++R+ ++ Q+
Sbjct: 377 QRIALVGPSGAGKTSLLNALLGFLPYQ-----GSLKINGIELRELDPESWRKHLSWVGQN 431
Query: 117 DRL------------QPLLTIENVMSLL--------------GLDESQNTRSSQLSGGQK 150
+L P + E + L GLD +++ LS GQ
Sbjct: 432 PQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491
Query: 151 KRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSC 210
+RL++A L+ +++ LDEPT S LD+ S
Sbjct: 492 QRLALARALLQPCQLLLLDEPTAS------------------------------LDAHSE 521
Query: 211 SQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
++ L S++ T++ T HQ L Q DQ++++ GQ + QG +L
Sbjct: 522 QLVMQALNAASRRQTTLMVT-HQLED-LAQW-DQIWVMQDGQIVQQGDYAELSQ 572
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 86.0 bits (214), Expect = 6e-19
Identities = 69/267 (25%), Positives = 118/267 (44%), Gaps = 79/267 (29%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+ K+L+ + K+VLK + +++ I+GPSG+GKS+LL L N
Sbjct: 3 IEIKNLSKSFGD--------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCL-----N 49
Query: 89 GVT----GQILTNG----HSRNINAFRRVSCYIQQDDRLQPLLTI-ENVM---------- 129
G+ G I +G ++I RR + Q L P LT+ ENV
Sbjct: 50 GLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLS 109
Query: 130 ---------SLL---GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
LL GL + + +QLSGGQ++R++IA
Sbjct: 110 KAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIA--------------------- 148
Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT 237
R AL + +P+VM DEPT+ LD + + + ++K ++++G T+I H+
Sbjct: 149 ----R---ALAM--DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-- 197
Query: 238 LF--QMFDQVYLLSGGQCLYQGATDQL 262
F ++ D+V + G+ + +G ++
Sbjct: 198 -FAREVADRVIFMDQGKIIEEGPPEEF 223
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 85.3 bits (212), Expect = 6e-19
Identities = 60/244 (24%), Positives = 98/244 (40%), Gaps = 70/244 (28%)
Query: 40 TGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNG 98
GL L +L + +A++GPSG GK++LL +++G R + G+IL +G
Sbjct: 4 KGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS--GEILIDG 61
Query: 99 --------HSRNINAFRRVSCYIQQDDRLQPLLTI-ENV--------------------- 128
RNI + QD L P LT+ EN+
Sbjct: 62 RDVTGVPPERRNI-------GMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVREL 114
Query: 129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE 188
+ L+GL+ N +LSGGQ++R+++A L P ++ LDEP S D K R + E
Sbjct: 115 LELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP-LSAL-DAKLREELREE 172
Query: 189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248
L ++ + G T I H L + D++ ++
Sbjct: 173 ---------------------------LKELQRELGITTIYVTHDQEEALA-LADRIAVM 204
Query: 249 SGGQ 252
+ G+
Sbjct: 205 NEGR 208
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 85.6 bits (213), Expect = 9e-19
Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 16/216 (7%)
Query: 59 FPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHS-RNINAFRRVSCYIQ-- 114
++ ++GP+GAGK++L +++SG R G +L +G + I
Sbjct: 23 VRPGEIHGLIGPNGAGKTTLFNLISGFLRPTS--GSVLFDGEDITGLPPHEIARLGIGRT 80
Query: 115 -QDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFL---- 168
Q RL P LT+ ENVM ++ +++ A EL+ + L
Sbjct: 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELL---ERVGLADLA 137
Query: 169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
D P Q++RL IA L +P+++ LDEP GL+ + + +L++ + ++G T++
Sbjct: 138 DRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVL 197
Query: 229 CTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
H + + D+V +L G+ + +G D++ N
Sbjct: 198 LVEHDMDV-VMSLADRVTVLDQGRVIAEGTPDEVRN 232
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 82.7 bits (205), Expect = 4e-18
Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 62/226 (27%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG------HSRN 102
K +L +L ++ AI+G SG+GKS+LL+++ +GQ+ NG +S+
Sbjct: 11 KVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD-SGQVYLNGQETPPLNSKK 69
Query: 103 INAFRR-VSCYIQQDDRLQPLLTIENVMSL----------------------LGLDESQN 139
+ FRR Y+ Q+ L T+E + L +GL+
Sbjct: 70 ASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK 129
Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD 199
+ +LSGG+++R+++A R + + P ++ D
Sbjct: 130 QKIYELSGGEQQRVALA-------RAI-----------------------LKPPPLILAD 159
Query: 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV 245
EPT LD ++ + + LL ++ +G+TII H P + D+V
Sbjct: 160 EPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA--KQADRV 203
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 81.5 bits (202), Expect = 5e-18
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 58/208 (27%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG---HSRNINAFR 107
VL+N+ + +AI+GPSG+GKS+L ++ G +G++ +G + N
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGADISQWDPNELG 75
Query: 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMF 167
Y+ QDD L EN+ LSGGQ++RL +A R ++
Sbjct: 76 DHVGYLPQDDELFSGSIAENI----------------LSGGQRQRLGLA-------RALY 112
Query: 168 LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS---QSCSQCIKLLKMISQQG 224
NPR++ LDEP + LD ++ +Q I LK G
Sbjct: 113 -----------------------GNPRILVLDEPNSHLDVEGERALNQAIAALKA---AG 146
Query: 225 RTIICTIHQPSATLFQMFDQVYLLSGGQ 252
T I H+P D++ +L G+
Sbjct: 147 ATRIVIAHRPE--TLASADRILVLEDGR 172
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 84.1 bits (208), Expect = 6e-18
Identities = 75/280 (26%), Positives = 122/280 (43%), Gaps = 77/280 (27%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+ +DL Y+ S K+ L N+ P N IA++GP+GAGKS+L N
Sbjct: 4 IETRDLCYSYSGS-------KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHF-----N 51
Query: 89 GV----TGQILTNGH---SRNINAFRRV-------------SCYIQQDDRLQPL------ 122
G+ +G +L G NI R+ S ++QD P+
Sbjct: 52 GILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDE 111
Query: 123 ----LTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
+ + + +LGL+E ++ LSGG+KKR++IA
Sbjct: 112 ETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAG--------------------- 150
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSAT 237
IA+E P+V+ LDEPT GLD Q + I L + + G T+I + HQ
Sbjct: 151 -----VIAME----PQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-L 200
Query: 238 LFQMFDQVYLLSGGQCLYQGATDQLV---NYLSSVNLPCP 274
+ +M D +Y++ G+ + G +++ + L+ V+L P
Sbjct: 201 VPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLARVHLDLP 240
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 81.8 bits (202), Expect = 2e-17
Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 30/168 (17%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
EI+FK+++Y+ K++LK++ +F + I+GPSGAGKS+L+ +++
Sbjct: 3 EIEFKEVSYSSFG--------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL-I 53
Query: 88 NGVTGQILTNGHS-RNINAF---RRVSCYIQQ----------DDRLQPLL------TIEN 127
+ G IL +G + I+ R++ QQ + P+L +E
Sbjct: 54 DPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEY 113
Query: 128 VMSLLGLDESQNTRS-SQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
+S++GL++ TR LSGG+ +R+SIA L NNP V+ LDEPT++
Sbjct: 114 YLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSA 161
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 81.4 bits (202), Expect = 2e-17
Identities = 68/246 (27%), Positives = 106/246 (43%), Gaps = 71/246 (28%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---SRNINAFR 107
+LK L P + +A++G SG GKS+++ +L + + +G+IL +G N+ R
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY-DPTSGEILLDGVDIRDLNLRWLR 76
Query: 108 RVSCYIQQDDRLQPLL---TI-EN-------------------------VMSLL-GLDES 137
+ Q+ P+L TI EN +MSL G D
Sbjct: 77 SQIGLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTL 132
Query: 138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMF 197
R SQLSGGQK+R++IA R L+ NP+++
Sbjct: 133 VGERGSQLSGGQKQRIAIA-------RA-----------------------LLRNPKILL 162
Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
LDE T+ LD++S + L +GRT I H+ S + D + +L GQ + QG
Sbjct: 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTI--RNADLIAVLQNGQVVEQG 219
Query: 258 ATDQLV 263
D+L+
Sbjct: 220 THDELM 225
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 85.3 bits (212), Expect = 2e-17
Identities = 69/280 (24%), Positives = 122/280 (43%), Gaps = 78/280 (27%)
Query: 17 SGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKS 76
TS AD++ + ++++T + +P+ VLK L + + + +A++G +G GKS
Sbjct: 327 PTTSTAAADQVSLTLNNVSFT------YPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKS 380
Query: 77 SLLDVLS-GYRSNGVTGQILTNGHSRNINAF-----RRVSCYIQQ--------------- 115
+LL +L+ + G+IL NG I + R+ + Q
Sbjct: 381 TLLQLLTRAWDPQ--QGEILLNGQ--PIADYSEAALRQAISVVSQRVHLFSATLRDNLLL 436
Query: 116 ------DDRLQPLLTIENVMSLLGLDESQNT------RSSQLSGGQKKRLSIALELINNP 163
D+ L +L + LL D+ N R QLSGG+++RL IA
Sbjct: 437 AAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGR--QLSGGEQRRLGIA------- 487
Query: 164 RVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ 223
R + D P ++ LDEPT GLD+++ Q ++LL + Q
Sbjct: 488 RALLHDAP-----------------------LLLLDEPTEGLDAETERQILELLAEHA-Q 523
Query: 224 GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
+T++ H+ T + FD++ ++ GQ + QG +L+
Sbjct: 524 NKTVLMITHR--LTGLEQFDRICVMDNGQIIEQGTHQELL 561
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 80.9 bits (200), Expect = 3e-17
Identities = 59/232 (25%), Positives = 111/232 (47%), Gaps = 58/232 (25%)
Query: 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--HSRNINAFRRVSCYIQQ 115
P+ +++AI+GPSGAGKS+LL++++G+ + +G+IL NG H+ + A R VS + Q
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA-SGEILINGVDHTASPPAERPVS-MLFQ 78
Query: 116 DDRLQPLLTIENVMSL-----LGLDESQNTR-----------------SSQLSGGQKKRL 153
++ L LT+ + L L L+ Q + +LSGGQ++R+
Sbjct: 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRV 138
Query: 154 SIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC 213
++A R + ++P ++ LDEP + LD ++
Sbjct: 139 ALA-------RCLVREQP-----------------------ILLLDEPFSALDPALRAEM 168
Query: 214 IKLLKMI-SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
+ L+ + ++ T++ H P ++ D+V L G+ QG+T +L++
Sbjct: 169 LALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELLS 219
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 82.7 bits (205), Expect = 3e-17
Identities = 64/263 (24%), Positives = 111/263 (42%), Gaps = 64/263 (24%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR-- 86
I+ ++++ T L ++ P ++ I+G SGAGKS+LL +++
Sbjct: 2 IELENVSKTFGQT---GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP 58
Query: 87 SNG---VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-ENVM------------- 129
++G V GQ LT + R+ I Q L T+ ENV
Sbjct: 59 TSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEI 118
Query: 130 --------SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181
L+GL + + +QLSGGQK+R++IA R
Sbjct: 119 KQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIA-------RA---------------- 155
Query: 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQ 240
L NNP+++ DE T+ LD ++ ++LLK I+++ G TI+ H+ +
Sbjct: 156 -------LANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVV--K 206
Query: 241 MF-DQVYLLSGGQCLYQGATDQL 262
D+V +L G+ + +G ++
Sbjct: 207 RICDRVAVLDQGRLVEEGTVSEV 229
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 79.8 bits (197), Expect = 3e-17
Identities = 59/200 (29%), Positives = 96/200 (48%), Gaps = 26/200 (13%)
Query: 44 FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNG---- 98
+ P +VLK L +++A++G +GAGKS+LL L+G R +G +L +G
Sbjct: 1 YPGGP-EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ--SGAVLIDGEPLD 57
Query: 99 HSRN--INAFRRVSCYIQQ-DDRLQPLLTIENV---MSLLGLDESQNTRSSQLSGGQKKR 152
+SR + +RV Q DD+L ++V LGL E++ R R
Sbjct: 58 YSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVER----------R 107
Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
+ AL + + PT +KKR++IA + P V+ LDEPT GLD Q
Sbjct: 108 VREALTAVGASG--LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ 165
Query: 213 CIKLLKMISQQGRTIICTIH 232
+ +L+ + +G T++ + H
Sbjct: 166 MLAILRRLRAEGMTVVISTH 185
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 80.1 bits (198), Expect = 4e-17
Identities = 59/218 (27%), Positives = 99/218 (45%), Gaps = 38/218 (17%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDV--LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86
I+F ++T K P L + + + + ++GPSGAGKS+LL ++
Sbjct: 1 IEFINVT---------KTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYK-E 50
Query: 87 SNGVTGQILTNG------HSRNINAFRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQN 139
+G I NG R I RR + QD RL P + ENV L
Sbjct: 51 ELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFAL------- 103
Query: 140 TRSSQLSGGQ-KKRLSIALELINNPRVMFLDEPTTSNPND----QKKRLSIALELINNPR 194
+ + + +KR+ ALEL+ L + P + +++R++IA ++N+P
Sbjct: 104 -EVTGVPPREIRKRVPAALELVG------LSHKHRALPAELSGGEQQRVAIARAIVNSPT 156
Query: 195 VMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH 232
++ DEPT LD + + + LLK I++ G T++ H
Sbjct: 157 ILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATH 194
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 79.9 bits (198), Expect = 5e-17
Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 80/255 (31%)
Query: 30 KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--RS 87
+ +DLT + P VL+++ + +AI+GP+GAGKS+LL + G +
Sbjct: 1 EVEDLTV------SYGGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT 52
Query: 88 NG---VTGQILTNGHSR----------------------------NINAFRRVSCYIQQD 116
+G V G+ L R + FRR+S + D
Sbjct: 53 SGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLS---KAD 109
Query: 117 DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
++ + +GL E + + +LSGGQ++R+ +A R
Sbjct: 110 KAK-----VDEALERVGLSELADRQIGELSGGQQQRVLLA-------RA----------- 146
Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSA 236
L+ +P ++ LDEP G+D ++ +LL+ + ++G TI+ H
Sbjct: 147 ------------LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG- 193
Query: 237 TLFQMFDQVYLLSGG 251
+ + FD+V LL+
Sbjct: 194 LVLEYFDRVLLLNRT 208
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 80.9 bits (200), Expect = 6e-17
Identities = 73/268 (27%), Positives = 129/268 (48%), Gaps = 50/268 (18%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
++ +DL Y+ G + LK + + +++A++GP+GAGKS+L N
Sbjct: 2 LETRDLKYSYPDG-------TEALKGINFKAEKGEMVALLGPNGAGKSTLF-----LHFN 49
Query: 89 GV----TGQILTNGH------SRNINAFRRVSCYIQQ-DDRLQPLLTIENV----MSLLG 133
G+ +G++L G + + V Q DD+L E+V ++L G
Sbjct: 50 GILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL-G 108
Query: 134 LDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQKKRLSIALELIN 191
L + + +KR+ AL+ + M F ++P QKKR++IA L
Sbjct: 109 LSKEE----------VEKRVKEALKAVG----MEGFENKPPHHLSGGQKKRVAIAGILAM 154
Query: 192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF-DQVYLLSG 250
P ++ LDEPT+GLD SQ +KLL ++++G TII + H L ++ D+VY++S
Sbjct: 155 KPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHD--VDLVPVYADKVYVMSD 212
Query: 251 GQCLYQGATDQL---VNYLSSVNLPCPK 275
G+ + +G ++ + + NL P+
Sbjct: 213 GKIIKEGTPKEVFSDIETIRKANLRLPR 240
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 83.4 bits (207), Expect = 9e-17
Identities = 56/257 (21%), Positives = 120/257 (46%), Gaps = 39/257 (15%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
++ ++LT +T G ++++ +++ I+G SG+GKS+L L G
Sbjct: 6 LEVENLTVEFATDGG----RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE 61
Query: 89 G---VTGQILTNG---HSRNINAFRRVS----CYIQQD--DRLQPLLTIENVMSLLGLDE 136
G +G+++ +G + R++ I QD L P++TI + +
Sbjct: 62 GGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQI------- 114
Query: 137 SQNTRSSQLSGG--QKKRLSIALELINNPRVMFLDEPTTSN--PND----QKKRLSIALE 188
+ +L G + + A+EL+ + L +P + P+ ++R+ IA+
Sbjct: 115 ---REALRLHGKGSRAEARKRAVELL---EQVGLPDPERRDRYPHQLSGGMRQRVMIAMA 168
Query: 189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTIICTIHQPSATLFQMFDQVYL 247
L P+++ DEPTT LD + +Q + LLK + + G ++ H + ++ D+V +
Sbjct: 169 LALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVV 227
Query: 248 LSGGQCLYQGATDQLVN 264
+ G+ + G T+++++
Sbjct: 228 MYKGEIVETGPTEEILS 244
Score = 64.1 bits (157), Expect = 9e-11
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 30/138 (21%)
Query: 65 IAIMGPSGAGKSSLLDVLSGY---RSNGVT--GQILTNGHSRNINAFRRVSCYIQ-QDDR 118
+ ++G SG+GKS+L +L+G S + GQ L RR+ Q
Sbjct: 320 LGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSS 379
Query: 119 LQPLLTIEN-----------------------VMSLLGLDESQNTR-SSQLSGGQKKRLS 154
L P +T+ + ++ L+GL R +LSGGQ++R++
Sbjct: 380 LNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVA 439
Query: 155 IALELINNPRVMFLDEPT 172
IA L P+++ LDEP
Sbjct: 440 IARALALEPKLLILDEPV 457
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 83.8 bits (208), Expect = 9e-17
Identities = 64/271 (23%), Positives = 113/271 (41%), Gaps = 71/271 (26%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
EI+F+++++ + + L N+ + +AI+G G+GKS+LL +L G Y+
Sbjct: 463 EIEFRNVSFA------YPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ 516
Query: 87 SNGVTGQILTNGH-SRNINAF--RRVSCYIQQDDRL------------QPLLTIENVMSL 131
G +L +G R I+ RR Y+ QD RL P E ++
Sbjct: 517 PTE--GSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRA 574
Query: 132 L--------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
GLD R LSGGQ++ +++A
Sbjct: 575 AELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALA--------------------- 613
Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT 237
R L+ +P ++ LDEPT+ +D++S + LK G+T++ H+ S
Sbjct: 614 ----RA-----LLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS-- 661
Query: 238 LFQMFDQVYLLSGGQCLYQGATDQLVNYLSS 268
L + D++ ++ G+ + G DQ++ L
Sbjct: 662 LLDLVDRIIVMDNGRIVADGPKDQVLEALRK 692
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 79.6 bits (197), Expect = 1e-16
Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 60/248 (24%)
Query: 45 KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG-----H 99
+ L N+ + + I+G SG+GKS+L +L+G +G IL +G
Sbjct: 16 GKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS-SGSILLDGKPLAPK 74
Query: 100 SRNINAFRRVSCYIQQD--DRLQPLLTIE--------------------NVMSLLGLDES 137
R +R V + QD L P T+ ++ +GL S
Sbjct: 75 KRAKAFYRPVQ-MVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPS 133
Query: 138 QNTRS-SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVM 196
R +LSGGQ++R++IA A LI P+++
Sbjct: 134 FLDRRPHELSGGQRQRIAIA----------------------------RA--LIPEPKLL 163
Query: 197 FLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256
LDEPT+ LD +Q + LL + ++ I A + M D++ ++ GQ +
Sbjct: 164 ILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI 223
Query: 257 GATDQLVN 264
G T++L++
Sbjct: 224 GPTEELLS 231
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 78.8 bits (195), Expect = 1e-16
Identities = 60/261 (22%), Positives = 112/261 (42%), Gaps = 73/261 (27%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
I+F++++++ + + L N+ + + +AI+G G+GKS+LL +L+G Y+
Sbjct: 2 RIEFRNVSFS------YPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK 55
Query: 87 SNGVTGQILTNGH-SRNINAF--RRVSCYIQQDDRL------------QPLLT---IENV 128
G +L +G R ++ RR Y+ QD L PL I
Sbjct: 56 PTS--GSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRA 113
Query: 129 MSLLGLDESQNT-----------RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
L G+ + N R LSGGQ++ +++A
Sbjct: 114 AELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALA--------------------- 152
Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTIICTIHQPSA 236
R L+N+P ++ LDEPT+ +D S + + L+ ++ +T+I H+PS
Sbjct: 153 ----RA-----LLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPS- 200
Query: 237 TLFQMFDQVYLLSGGQCLYQG 257
L + D++ ++ G+ + G
Sbjct: 201 -LLDLVDRIIVMDSGRIVADG 220
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 78.4 bits (194), Expect = 2e-16
Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 38/193 (19%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+F++++ G ++ L+++ P + + + GPSGAGKS+LL ++ Y
Sbjct: 2 IRFENVSKAYPGG-------REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLI--YGEE 52
Query: 89 GVT-GQILTNGHS------RNINAFRRVSCYIQQDDRLQPLLTI-ENV------------ 128
T G+IL NGH R I RR + QD RL P T+ ENV
Sbjct: 53 RPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR 112
Query: 129 ------MSLL---GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQ 179
+L GL SQLSGG+++R++IA ++N P V+ DEPT + D
Sbjct: 113 EIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDL 172
Query: 180 KKRLSIALELINN 192
+ E IN
Sbjct: 173 SWEIMRLFEEINR 185
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 77.9 bits (192), Expect = 2e-16
Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 58/224 (25%)
Query: 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--HSRNINAFRRVSCYIQQD 116
F ++ AI+GPSG+GKS+LL++++G+ + +G++L NG + A R VS + Q+
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFET-PQSGRVLINGVDVTAAPPADRPVS-MLFQE 78
Query: 117 DRLQPLLTIENVMSL----------------------LGLDESQNTRSSQLSGGQKKRLS 154
+ L LT+E + L +GL + +LSGG+++R++
Sbjct: 79 NNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVA 138
Query: 155 IALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI 214
+A RV+ D+P V+ LDEP LD ++ +
Sbjct: 139 LA-------RVLVRDKP-----------------------VLLLDEPFAALDPALRAEML 168
Query: 215 KL-LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
L L + ++ T++ HQP ++ +V L G+ QG
Sbjct: 169 DLVLDLHAETKMTVLMVTHQPEDAK-RLAQRVVFLDNGRIAAQG 211
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 82.1 bits (203), Expect = 3e-16
Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 64/220 (29%)
Query: 46 QEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVL-------SG-YRSNGVTGQILTN 97
+E +VLK + + +++AI+G SG+GKS+L+++L SG YR V GQ +
Sbjct: 18 EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYR---VAGQDVAT 74
Query: 98 GHSRNINAFRRVSC-YIQQDDRLQPLLTIE-NV---------------------MSLLGL 134
+ + RR +I Q L LT NV + LGL
Sbjct: 75 LDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGL 134
Query: 135 DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPR 194
++ + SQLSGGQ++R+SIA L+N +V+ DEPT +
Sbjct: 135 EDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGA-------------------- 174
Query: 195 VMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP 234
LDS S + + +L + +G T+I H P
Sbjct: 175 ----------LDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 78.0 bits (193), Expect = 3e-16
Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 46/194 (23%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
++FK++T+ + + VL+++ P+ + +A++GPSG+GKS+L++++ R
Sbjct: 1 VEFKNVTF------RYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFY 52
Query: 89 GVT-GQILTNGHS-RNI--NAFRRVSCYIQQDDRLQPLL---TIEN-------------- 127
V G+IL +GH R+ + RR + QD L T+
Sbjct: 53 DVDSGRILIDGHDVRDYTLASLRRQIGLVSQD----VFLFNDTVAENIAYGRPGATREEV 108
Query: 128 ------------VMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
+M L G D R +LSGGQ++R++IA L+ +P ++ LDE T++
Sbjct: 109 EEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSA 168
Query: 175 NPNDQKKRLSIALE 188
+ ++ + ALE
Sbjct: 169 LDTESERLVQAALE 182
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 77.5 bits (192), Expect = 4e-16
Identities = 52/230 (22%), Positives = 97/230 (42%), Gaps = 61/230 (26%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVS---CYIQQ 115
P +++A++G +GAGK++LL + G +G I +G + R Y+ +
Sbjct: 24 PEGEIVALLGRNGAGKTTLLKTIMGL-LPPRSGSIRFDGRDITGLPPHERARAGIGYVPE 82
Query: 116 DDRLQPLLTI-ENVMSLLG----------------------LDESQNTRSSQLSGGQKKR 152
R+ P LT+ EN+ LLG L E + + LSGG+++
Sbjct: 83 GRRIFPELTVEENL--LLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQM 140
Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
L+IA R L++ P+++ LDEP+ GL + +
Sbjct: 141 LAIA-------RA-----------------------LMSRPKLLLLDEPSEGLAPKIVEE 170
Query: 213 CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
+ ++ + +G TI+ L ++ D+ Y+L G+ + +G +L
Sbjct: 171 IFEAIRELRDEGVTILLVEQNARFAL-EIADRAYVLERGRVVLEGTAAEL 219
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 77.9 bits (192), Expect = 4e-16
Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 30/152 (19%)
Query: 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-INAFRR 108
DVL N+ +++AI+G SG+GKS+LL +L G + +G ++ NG + +++ +
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP-TSGDVIFNGQPMSKLSSAAK 81
Query: 109 VSC------YIQQDDRLQPLLT-IENV-MSLL--------------------GLDESQNT 140
+I Q L P T +ENV M LL GL+ N
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH 141
Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
R S+LSGG+++R++IA L+NNPR++ DEPT
Sbjct: 142 RPSELSGGERQRVAIARALVNNPRLVLADEPT 173
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 77.7 bits (192), Expect = 4e-16
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 28/163 (17%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGHS-RNINAFRR 108
L + + ++GPSG GK++LL +++G+ T G+IL +G N+ +R
Sbjct: 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE--TPTSGEILLDGKDITNLPPHKR 72
Query: 109 VSCYIQQDDRLQPLLTI-ENV---------------------MSLLGLDESQNTRSSQLS 146
+ Q+ L P LT+ EN+ + L+ L+ N + SQLS
Sbjct: 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLS 132
Query: 147 GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189
GGQ++R++IA L+N P+V+ LDEP + D K R + LEL
Sbjct: 133 GGQQQRVAIARALVNEPKVLLLDEPLGA--LDLKLRKDMQLEL 173
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 76.8 bits (190), Expect = 5e-16
Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 37/157 (23%)
Query: 48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT----GQILTNG----- 98
VLK + +++ I+GPSG+GKS+LL + N + G I+ +G
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCI-----NLLEEPDSGTIIIDGLKLTD 66
Query: 99 HSRNINAFRRVSCYIQQDDRLQPLLTI-ENV-------------------MSLL---GLD 135
+NIN R+ + Q L P LT+ EN+ + LL GL
Sbjct: 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA 126
Query: 136 ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
+ + +QLSGGQ++R++IA L NP+VM DEPT
Sbjct: 127 DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 77.2 bits (191), Expect = 5e-16
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 37/170 (21%)
Query: 40 TGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG----YRSNGVTGQIL 95
L K LK++ P ++ A++GPSG GKS+LL +L+ G++L
Sbjct: 4 RDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVL 63
Query: 96 TNGHSRNINAF--------RRVSCYIQQ---------------------DDRLQPLLTIE 126
+G ++I RRV Q+ + + +E
Sbjct: 64 LDG--KDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVE 121
Query: 127 NVMSLLGLDESQNTRSS--QLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
+ L + R LSGGQ++RL +A L N P V+ LDEPT++
Sbjct: 122 EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 77.2 bits (191), Expect = 6e-16
Identities = 48/243 (19%), Positives = 104/243 (42%), Gaps = 60/243 (24%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNG--------H 99
+ V+ + +++ ++GP+GAGK++ ++ G + + G+IL +G H
Sbjct: 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS--GKILLDGQDITKLPMH 70
Query: 100 SR----------NINAFRRVSCY--------IQQDDRLQPLLTIENVMSLLGLDESQNTR 141
R + FR+++ I+ + + +E ++ + + ++
Sbjct: 71 KRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSK 130
Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201
+S LSGG+++R+ IA R L NP+ + LDEP
Sbjct: 131 ASSLSGGERRRVEIA-------RA-----------------------LATNPKFLLLDEP 160
Query: 202 TTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261
G+D + K++K++ +G ++ T H TL + D+ Y++ G+ L +G ++
Sbjct: 161 FAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETL-SITDRAYIIYEGKVLAEGTPEE 219
Query: 262 LVN 264
+
Sbjct: 220 IAA 222
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 76.8 bits (190), Expect = 7e-16
Identities = 57/264 (21%), Positives = 107/264 (40%), Gaps = 72/264 (27%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
++ K+L+ + TG G + L ++ + + ++G SG+GKS+L + G
Sbjct: 2 LEVKNLSVSFPTGGGSVK----ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP 57
Query: 89 GVTGQILTNGHSRNINA-------FRRVSCYIQQDDR--LQPLLTIE------------- 126
+G I+ +G + + + + QD L P +TI
Sbjct: 58 -TSGSIIFDGKDLLKLSRRLRKIRRKEIQ-MVFQDPMSSLNPRMTIGEQIAEPLRIHGKL 115
Query: 127 -----------NVMSLLGLDESQ-NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
++ +GL E N +LSGGQ++R++IA L NP++
Sbjct: 116 SKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKL--------- 166
Query: 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQ 233
LI DEPT+ LD +Q + LLK + ++ G T++ H
Sbjct: 167 --------------LI-------ADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205
Query: 234 PSATLFQMFDQVYLLSGGQCLYQG 257
+ ++ D+V ++ G+ + +G
Sbjct: 206 LGV-VAKIADRVAVMYAGKIVEEG 228
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 76.9 bits (190), Expect = 7e-16
Identities = 60/265 (22%), Positives = 108/265 (40%), Gaps = 72/265 (27%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
EI+F+++ ++ K VLK++ + +AI+GP+GAGK++L+++L Y
Sbjct: 2 EIEFENVNFSYDEK-------KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD 54
Query: 87 SNGVTGQILTNG---HSRNINAFRRVSCYIQQDDRLQPLLTIEN---------------- 127
GQIL +G + + R + + QD L +EN
Sbjct: 55 PQK--GQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEA 112
Query: 128 ---------VMSLL-GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
+M L G D LS G+++ L+IA ++ +P+++ LDE T++
Sbjct: 113 AKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDT 172
Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT 237
+ +K + ALE + GRT I H+ S
Sbjct: 173 ETEKLIQEALEKLMK-------------------------------GRTSIIIAHRLSTI 201
Query: 238 LFQMFDQVYLLSGGQCLYQGATDQL 262
D++ +L G+ + +G D+L
Sbjct: 202 KNA--DKILVLDDGKIIEEGTHDEL 224
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 73.1 bits (180), Expect = 1e-15
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 23/120 (19%)
Query: 76 SSLLDVLSGYRSNGVTGQILTNGHSRN----INAFRRVSCYIQQDDRLQPLLT------- 124
S+LL +++G +G IL +G R+ + QD +L P LT
Sbjct: 1 STLLKLITG-LLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF 59
Query: 125 ----------IENVMSLLGLDESQNT-RSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
E + +GL + + LSGGQK+R++IA L+ P+++ LDEPT
Sbjct: 60 GLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 76.4 bits (188), Expect = 1e-15
Identities = 55/226 (24%), Positives = 109/226 (48%), Gaps = 17/226 (7%)
Query: 44 FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI 103
+K + +L N+ R +++ I+G SG+GKS+L ++ + G++L +GH +
Sbjct: 10 YKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-PENGRVLVDGHDLAL 68
Query: 104 ---NAFRRVSCYIQQDDRLQPLLTIENVMSL-LGLDESQNTRSSQLSGGQK--KRLSIAL 157
RR + Q++ L +N+ G+ + +++L+G L
Sbjct: 69 ADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGY 128
Query: 158 ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL 217
+ I + E Q++R++IA LI+NPR++ DE T+ LD +S ++ +
Sbjct: 129 DTI-------VGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM 181
Query: 218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
I GRT+I H+ S + D++ ++ G+ + QG+ D+L+
Sbjct: 182 HDIC-AGRTVIIIAHRLSTV--KNADRIIVMEKGRIVEQGSHDELL 224
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 77.4 bits (190), Expect = 1e-15
Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 30/261 (11%)
Query: 38 VSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGV 90
V+ LGF K VL + FP+ + ++MGP+G+GK++ L D +SGYR
Sbjct: 25 VNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYR---Y 79
Query: 91 TGQILTNGHS----RNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLS 146
+G +L G S R++ FRR + Q P+ ++NV++ G+ + +
Sbjct: 80 SGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLA--GVRAHKLVPRKEFR 137
Query: 147 GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206
G + RL+ + L + + D P + Q++ L +A L NP V+ LDEPT+ LD
Sbjct: 138 GVAQARLT-EVGLWDAVKDRLSDSPFRLS-GGQQQLLCLARTLAVNPEVLLLDEPTSALD 195
Query: 207 SQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYL 266
+ + + ++ ++ + II T + A ++ D+ L G+ + +G T+QL +
Sbjct: 196 PTTTEKIEEFIRSLADRLTVIIVTHNLAQAA--RISDRAALFFDGRLVEEGPTEQLFS-- 251
Query: 267 SSVNLPCPKYHNPADFVIELA 287
PK+ A +V L+
Sbjct: 252 ------SPKHAETARYVAGLS 266
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 75.8 bits (187), Expect = 1e-15
Identities = 59/227 (25%), Positives = 90/227 (39%), Gaps = 64/227 (28%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH-----SRNIN---AFRRVSCY 112
+ ++ I G SGAGKS+LL ++G G I+ NG + IN R++
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDG-GTIVLNGTVLFDSRKKINLPPQQRKIG-L 79
Query: 113 IQQDDRLQPLLTI-ENV-------------------MSLLGLDESQNTRSSQLSGGQKKR 152
+ Q L P L + EN+ + LLGLD N +QLSGG+K+R
Sbjct: 80 VFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQR 139
Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
+++A R L P ++ LDEP + LD Q
Sbjct: 140 VALA-------RA-----------------------LAAQPELLLLDEPFSALDRALRLQ 169
Query: 213 CIKLLKMISQ--QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
+ LK I + I T H S + D++ ++ G+ Y G
Sbjct: 170 LLPELKQIKKNLNIPVIFVT-HDLS-EAEYLADRIVVMEDGRLQYIG 214
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 78.5 bits (194), Expect = 1e-15
Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 41/153 (26%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNG--------HSR 101
+ ++ + + ++GPSG GK++LL +++G + + G+IL +G R
Sbjct: 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS--GEILLDGEDITDVPPEKR 77
Query: 102 NINAFRRVSCYIQQDDRLQPLLTI-ENV----------------------MSLLGLDESQ 138
I + Q L P +T+ ENV + L+GL+
Sbjct: 78 PIG-------MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA 130
Query: 139 NTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
+ + QLSGGQ++R+++A L+ P+V+ LDEP
Sbjct: 131 DRKPHQLSGGQQQRVALARALVPEPKVLLLDEP 163
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 74.7 bits (184), Expect = 1e-15
Identities = 54/232 (23%), Positives = 101/232 (43%), Gaps = 57/232 (24%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRS 87
+ +++++ + ++ + VLKNL + IA++G SG+GKS+LL +L+G +
Sbjct: 1 LSINNVSFS------YPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP 54
Query: 88 NGVTGQILTNGH--SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL 145
G+I +G S A + + Q +P L + + LG +
Sbjct: 55 Q--QGEITLDGVPVSDLEKALSSLISVLNQ----RPYLFDTTLRNNLGR---------RF 99
Query: 146 SGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205
SGG+++RL++A R++ D P ++ LDEPT GL
Sbjct: 100 SGGERQRLALA-------RILLQDAP-----------------------IVLLDEPTVGL 129
Query: 206 DSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
D + Q + L+ + +T+I H + + D++ L G+ + QG
Sbjct: 130 DPITERQLLSLI-FEVLKDKTLIWITHHLTG--IEHMDKILFLENGKIIMQG 178
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 76.7 bits (189), Expect = 1e-15
Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 25/152 (16%)
Query: 42 LGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR 101
L ++ +P+ L+++ S +L+ ++GPSG GK++LL++++G+ + G I NG R
Sbjct: 11 LSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-SRGSIQLNG--R 67
Query: 102 NINAFRRVSCYIQQDDRLQPLLT-IENV---------------------MSLLGLDESQN 139
I + Q++ L P L I+NV ++L+GL+ +++
Sbjct: 68 RIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEH 127
Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
QLSGG ++R+ IA L P+++ LDEP
Sbjct: 128 KYIWQLSGGMRQRVGIARALAVEPQLLLLDEP 159
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 75.3 bits (186), Expect = 2e-15
Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 72/266 (27%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+F+++T+ G + VLK++ P+ + +AI+GPSG+GKS++L +L +R
Sbjct: 1 IEFENVTFAYDPG-------RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLL--FRFY 51
Query: 89 GVT-GQILTNGHS-RNI--NAFRRVSCYIQQDDRL------------QPLLTIENVM--- 129
V+ G IL +G R + ++ RR + QD L +P T E V+
Sbjct: 52 DVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAA 111
Query: 130 -------SLLGLDESQNT----RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
++ + +T R +LSGG+K+R++IA R
Sbjct: 112 KAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIA-------RA------------- 151
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
++ NP ++ LDE T+ LD+ + + L+ +S +GRT I H+ S T+
Sbjct: 152 ----------ILKNPPILLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIAHRLS-TI 199
Query: 239 FQMFDQVYLLSGGQCLYQGATDQLVN 264
D++ +L G+ + +G ++L+
Sbjct: 200 VNA-DKIIVLKDGRIVERGTHEELLA 224
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 75.1 bits (185), Expect = 3e-15
Identities = 54/217 (24%), Positives = 102/217 (47%), Gaps = 19/217 (8%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNGHS--RNINAFRR 108
++ + R ++ ++GP+GAGK++ + +L+ + G+ GH R RR
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS--GRATVAGHDVVREPREVRR 73
Query: 109 VSCYIQQDDRLQPLLT-IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMF 167
+ QD + LT EN+ L ++ ++R+ L+ + +
Sbjct: 74 RIGIVFQDLSVDDELTGWENLYIHARL---YGVPGAER----RERIDELLDFVG--LLEA 124
Query: 168 LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL-KMISQQGRT 226
D + ++RL IA L++ P V+FLDEPT GLD Q+ + + + K+ + G T
Sbjct: 125 ADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184
Query: 227 IICTIH-QPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
I+ T H A Q+ D+V ++ G+ + +G ++L
Sbjct: 185 ILLTTHYMEEAE--QLCDRVAIIDHGRIIAEGTPEEL 219
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 79.0 bits (195), Expect = 3e-15
Identities = 60/242 (24%), Positives = 114/242 (47%), Gaps = 25/242 (10%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I F+++ + + + +VL NL + I I+GPSG+GKS+L +L +
Sbjct: 456 ITFENIRFR------YAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP 509
Query: 89 GVTGQILTNGHSRNI---NAFRRVSCYIQQDDRLQPLLTIENV-MSLLGLDESQNTRSSQ 144
GQ+L +G I RR + Q++ L +N+ + G +++
Sbjct: 510 Q-HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAK 568
Query: 145 LSGGQKKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201
L+G A + I+ + + E + Q++R++IA L+ NPR++ DE
Sbjct: 569 LAG--------AHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEA 620
Query: 202 TTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261
T+ LD +S + ++ ++ I +GRT+I H+ S + D++ +L GQ G ++
Sbjct: 621 TSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTV--RACDRIIVLEKGQIAESGRHEE 677
Query: 262 LV 263
L+
Sbjct: 678 LL 679
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 74.6 bits (184), Expect = 4e-15
Identities = 59/254 (23%), Positives = 103/254 (40%), Gaps = 70/254 (27%)
Query: 40 TGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNG 98
GL F+ + L ++ + +A++GP+GAGKS+L +L+ Y + GQI G
Sbjct: 5 AGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ--EGQISVAG 62
Query: 99 HS-RN--INAFRRVSCYIQQD---------------------DRLQPLLTIENVMSLLGL 134
H R A R+ QQ R + I +++ LGL
Sbjct: 63 HDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGL 122
Query: 135 DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPR 194
E + + +L+GG ++R+ IA R L++ P
Sbjct: 123 AERADDKVRELNGGHRRRVEIA-------RA-----------------------LLHRPA 152
Query: 195 VMFLDEPTTGLDSQSCSQCIKLLKMISQ-QGRTIICTIH-----QPSATLFQMFDQVYLL 248
++ LDEPT GLD S + ++ +++ QG +++ H + D++ +L
Sbjct: 153 LLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVL 205
Query: 249 SGGQCLYQGATDQL 262
G+ L GA +L
Sbjct: 206 HRGRVLADGAAAEL 219
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 73.6 bits (181), Expect = 5e-15
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 21/144 (14%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--HSRNINAFRR 108
+ + L + + + + GP+G GK++LL +L+G +G++ NG + + R
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL-LRPDSGEVRWNGTALAEQRDEPHR 73
Query: 109 VSCYIQQDDRLQPLLT------------------IENVMSLLGLDESQNTRSSQLSGGQK 150
Y+ L+P L+ IE+ ++ +GL ++ ++QLS GQ+
Sbjct: 74 NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQ 133
Query: 151 KRLSIALELINNPRVMFLDEPTTS 174
+RL++A ++ + LDEPTT+
Sbjct: 134 RRLALARLWLSRAPLWILDEPTTA 157
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 73.9 bits (182), Expect = 5e-15
Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 34/173 (19%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
+K ++L G + VLK + +++AI+G SG+GKS+LL +L G N
Sbjct: 2 LKCENLGKRYQEG----KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL-DN 56
Query: 89 GVTGQILTNGH------SRNINAFRRVSC-YIQQDDRLQPLLTI-ENV-MSLL------- 132
+G++L NG S R +I Q L P T ENV M LL
Sbjct: 57 PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVK 116
Query: 133 -------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
GL+ N R S+LSGG+++R++IA L+N P ++ DEPT
Sbjct: 117 EAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPT 169
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 74.9 bits (185), Expect = 6e-15
Identities = 63/267 (23%), Positives = 106/267 (39%), Gaps = 75/267 (28%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+ + +T + +L + P +++AI+G SG+GKS+LL ++ G
Sbjct: 9 IEVRGVT--------KSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP 60
Query: 89 GVTGQILTNGHS-------RNINAFRRVSCYIQQDDRLQPLLTIENVM------------ 129
G+IL +G +R+ QQ L ENV
Sbjct: 61 D-KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPES 119
Query: 130 ----------SLLGLDESQNTR-SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
L+GL + S+LSGG +KR+++A R + LD
Sbjct: 120 LIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALA-------RAIALD--------- 163
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLD---SQSCSQCIKLLKMISQQGRTIICTIHQPS 235
P ++FLDEPT+GLD + + I+ L G T+I H
Sbjct: 164 --------------PELLFLDEPTSGLDPISAGVIDELIRELN--DALGLTVIMVTHDLD 207
Query: 236 ATLFQMFDQVYLLSGGQCLYQGATDQL 262
+L + D+V +L+ G+ + +G ++L
Sbjct: 208 -SLLTIADRVAVLADGKVIAEGTPEEL 233
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 75.8 bits (187), Expect = 7e-15
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 34/168 (20%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAF- 106
+VLK++ + + ++GPSG GKS+LL +++G G+IL +G R++
Sbjct: 16 FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS--GEILIDG--RDVTDLP 71
Query: 107 ---RRVSCYIQQDDRLQPLLT----------------------IENVMSLLGLDESQNTR 141
R ++ + Q+ L P +T ++ V LLGL+ N +
Sbjct: 72 PEKRGIA-MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRK 130
Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189
QLSGGQ++R+++A L+ P+V LDEP SN D K R+ + E+
Sbjct: 131 PLQLSGGQRQRVALARALVRKPKVFLLDEP-LSNL-DAKLRVLMRSEI 176
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 73.4 bits (181), Expect = 7e-15
Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 33/219 (15%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFR 107
K VL ++ ++ +GP+GAGK++ + ++ G + + + +NI A R
Sbjct: 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALR 72
Query: 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMF 167
R+ I+ P LT + LL L G +KKR+ L+++
Sbjct: 73 RIGALIEAPG-FYPNLTARENLRLLAR----------LLGIRKKRIDEVLDVVG------ 115
Query: 168 LDEPTTSNPNDQK---------KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK 218
+ +K +RL IAL L+ NP ++ LDEPT GLD + +L+
Sbjct: 116 -----LKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELIL 170
Query: 219 MISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
+ QG T++ + H S + ++ D++ +++ G+ + +G
Sbjct: 171 SLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 74.3 bits (183), Expect = 8e-15
Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 29/226 (12%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG-VTGQILTNGHSRNINAF- 106
K +L +L P+ ++ A++GP+G GKS+LL + R +G + I+
Sbjct: 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA--RLLTPQSGTVFLGDKP--ISMLS 70
Query: 107 -----RRVSCYIQQDDRLQPLLTIE--NVMSLLGLDES-QNTRSSQLSGGQKKRLSIALE 158
RR++ Q LT E V L+ S + +LS R++ A+E
Sbjct: 71 SRQLARRLALLPQH------HLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAME 124
Query: 159 LINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK 218
D T Q++R +A+ L + V+ LDEPTT LD + ++L++
Sbjct: 125 QTRI--NHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMR 182
Query: 219 MISQQGRTIICTIH---QPSATLFQMFDQVYLLSGGQCLYQGATDQ 261
++ QG+T++ +H Q S + D + +L+ G + QG ++
Sbjct: 183 ELNTQGKTVVTVLHDLNQAS----RYCDHLVVLANGHVMAQGTPEE 224
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 73.7 bits (181), Expect = 9e-15
Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 24/144 (16%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--------HSRN 102
L ++ P+ L+A++GPSG+GKS+LL +++G +G+I NG R
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD-SGRIRLNGQDATRVHARDRK 73
Query: 103 IN-------AFRRVSCY--------IQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG 147
I F+ ++ I++ + + +E ++ L+ L+ + +QLSG
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSG 133
Query: 148 GQKKRLSIALELINNPRVMFLDEP 171
GQ++R+++A L P+V+ LDEP
Sbjct: 134 GQRQRVALARALAVEPQVLLLDEP 157
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 73.8 bits (181), Expect = 1e-14
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 25/227 (11%)
Query: 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG----YRSNGVTGQILTNGHS----R 101
+VL + P N + A+MGPSG+GKS+LL V + Y V+G++ +G
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76
Query: 102 NINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL-- 159
I RRV Q + + L ENV L L+ ++ ++R+ ALE
Sbjct: 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKE-----LQERVRWALEKAQ 131
Query: 160 ----INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK 215
+ + LD P Q++RL IA L P V+ DEPT LD ++ ++ I+
Sbjct: 132 LWDEVKDR----LDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAK-IE 186
Query: 216 LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
L + ++ TI+ H P ++ D V L GQ + G T ++
Sbjct: 187 SLFLELKKDMTIVLVTHFPQQAA-RISDYVAFLYKGQIVEWGPTREV 232
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 74.7 bits (184), Expect = 1e-14
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNGHS--RNINAFRRVSCYIQ 114
+ ++ +GP+GAGK++ + +L+ R G G+ R RR +
Sbjct: 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTS--GTARVAGYDVVREPRKVRRSIGIVP 72
Query: 115 QDDRLQPLLT-IENVM---SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
Q + LT EN+ L GL + + ++R LEL D
Sbjct: 73 QYASVDEDLTGRENLEMMGRLYGLPKDE----------AEERAEELLELFE--LGEAADR 120
Query: 171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICT 230
P + ++RL IA LI+ P V+FLDEPTTGLD ++ ++ + ++G TI+ T
Sbjct: 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLT 180
Query: 231 IH 232
H
Sbjct: 181 TH 182
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 74.3 bits (182), Expect = 1e-14
Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 24/221 (10%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH--------------SRNINAF 106
+++A++GPSG+GKS+LL LSG +TG H +R+I
Sbjct: 29 HGEMVALLGPSGSGKSTLLRHLSGL----ITGDKSAGSHIELLGRTVQREGRLARDIRKS 84
Query: 107 RRVSCYI-QQDDRLQPLLTIENVM-SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
R + YI QQ + + L +ENV+ LG T S + QK+R AL +
Sbjct: 85 RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVG--M 142
Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ- 223
V F + ++ Q++R++IA L+ +V+ DEP LD +S + L+ I+Q
Sbjct: 143 VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND 202
Query: 224 GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
G T++ T+HQ L + +++ L G Y G++ Q N
Sbjct: 203 GITVVVTLHQVDYAL-RYCERIVALRQGHVFYDGSSQQFDN 242
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 75.5 bits (186), Expect = 1e-14
Identities = 50/228 (21%), Positives = 94/228 (41%), Gaps = 54/228 (23%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH-----SRNIN--AFRRVSCY 112
P+ + A+ GPSG+GK+SL+++++G G+I NG + I +R Y
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPDE-GRIELNGRVLVDAEKGIFLPPEKRRIGY 80
Query: 113 IQQDDRLQPLLT----------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIA 156
+ QD RL P T + +++LLG++ + LSGG+K+R++I
Sbjct: 81 VFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIG 140
Query: 157 LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL 216
L+ P ++ +DEP S LD P + +
Sbjct: 141 RALLTAPELLLMDEPLAS-----------------------LDLPRKR-------EILPY 170
Query: 217 LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
L+ + + I + + ++ D+V +L G+ G +++
Sbjct: 171 LERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 72.7 bits (179), Expect = 1e-14
Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 26/183 (14%)
Query: 65 IAIM-GPSGAGKSSLLDVLSGYRS--NG---VTGQILTNGHSRNINAFRRVSCYIQQDDR 118
I I+ GPSG+GK++LL ++ G RS G V GQ L + + RR YI Q
Sbjct: 33 IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHN 92
Query: 119 LQPLLTIE-NVMSLLGLDESQNTRSSQLSGGQKKRLSIA-LELINNPRVMFLDEPTTSNP 176
L LT NV + L+ N LS + + + A LE + L + P
Sbjct: 93 LLGFLTARQNVQ--MALELQPN-----LSYQEARERARAMLEAVG------LGDHLDYYP 139
Query: 177 ND----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL-KMISQQGRTIICTI 231
++ QK+R++IA L++ P+++ DEPT LDS+S ++L+ K+ +QG TI+
Sbjct: 140 HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVT 199
Query: 232 HQP 234
H
Sbjct: 200 HDN 202
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 73.0 bits (180), Expect = 2e-14
Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 63/262 (24%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--YR 86
I+ K+++ G LK++ P ++ I+G SGAGKS+L+ ++G
Sbjct: 2 IELKNVSKVFGDTGGKVT----ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP 57
Query: 87 SNG---VTGQILTNGHSRNINAFRRVSCYI-QQDDRLQPLLTIENVM------------- 129
++G V G LT + + RR I Q + L ENV
Sbjct: 58 TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI 117
Query: 130 --------SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181
L+GL++ + +QLSGGQK+R+ IA L NNP+V+ DE T++
Sbjct: 118 EERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSA------- 170
Query: 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQ 240
LD ++ + LL+ I+++ G TI+ H+ + +
Sbjct: 171 -----------------------LDPETTQSILALLRDINRELGLTIVLITHEME-VVKR 206
Query: 241 MFDQVYLLSGGQCLYQGATDQL 262
+ D+V ++ G+ + +G +++
Sbjct: 207 ICDRVAVMEKGEVVEEGTVEEV 228
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 72.2 bits (178), Expect = 2e-14
Identities = 44/202 (21%), Positives = 81/202 (40%), Gaps = 49/202 (24%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVS 110
+ L + + + + GP+G+GK++LL +++G G I +G +
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL-LPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 111 CYIQQDDRLQPLLTI-ENV-----------------MSLLGLDESQNTRSSQLSGGQKKR 152
Y+ + ++P LT+ EN+ + +GL + LS GQK+R
Sbjct: 76 HYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRR 135
Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
+++A RL L++N + LDEPT LD+ + +
Sbjct: 136 VALA-------------------------RL-----LVSNRPIWILDEPTAALDAAAVAL 165
Query: 213 CIKLLKMISQQGRTIICTIHQP 234
+L++ QG +I H P
Sbjct: 166 FAELIRAHLAQGGIVIAATHIP 187
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 73.3 bits (181), Expect = 2e-14
Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 54/168 (32%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGH-- 99
K LK++ P N++ A++GPSG GKS+LL D++ G R V G++L +G
Sbjct: 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR---VEGEVLLDGKNI 76
Query: 100 ---SRNINAFRR-VSCYIQQDDRLQPL-LTI-ENVM-------------------SLLG- 133
++ RR V Q + P ++I +NV SL
Sbjct: 77 YDPKVDVVELRRRVGMVFQ---KPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKA 133
Query: 134 ---------LDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
L +S LSGGQ++RL IA L P V+ +DEPT
Sbjct: 134 ALWDEVKDRLHKSALG----LSGGQQQRLCIARALAVKPEVLLMDEPT 177
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 72.9 bits (180), Expect = 2e-14
Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 71/238 (29%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVLSG---YRSNGVTGQILTNGHSRNIN---AFRRVS--- 110
+++A++G +GAGK++LL + G RS G+I+ +G +I R
Sbjct: 27 ERGEIVALLGRNGAGKTTLLKTIMGLVRPRS----GRIIFDG--EDITGLPPHERARLGI 80
Query: 111 CYIQQDDRLQPLLTI-ENVMSLLGLD-----------------------ESQNTRSSQLS 146
Y+ + R+ P LT+ EN+ LLG E +N R+ LS
Sbjct: 81 AYVPEGRRIFPRLTVEENL--LLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLS 138
Query: 147 GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206
GG+ + M L+IA L++ P+++ LDEP+ GL
Sbjct: 139 GGE--------------QQM----------------LAIARALMSRPKLLLLDEPSEGLA 168
Query: 207 SQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
+ + + +K + ++G I + Q + ++ D+ Y+L G+ + G +L+
Sbjct: 169 PKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 75.9 bits (187), Expect = 2e-14
Identities = 64/266 (24%), Positives = 115/266 (43%), Gaps = 70/266 (26%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
I+F++++++ K VLK++ + +AI+GPSG+GKS+L+ +L
Sbjct: 328 SIEFENVSFSYPGK-------KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD 380
Query: 88 NGVTGQILTNGHS-RNINAF--RRVSCYIQQDDRL------------QPLLTIENVMSLL 132
+G+IL +G R+I+ R+ + QD L +P T E + L
Sbjct: 381 PT-SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEAL 439
Query: 133 --------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
G D R LSGGQ++RL+IA L+ NP ++ LDE T++
Sbjct: 440 KLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSA---- 495
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
LD+++ + LK + +GRT + H+ S
Sbjct: 496 --------------------------LDTETEALIQDALKKLL-KGRTTLIIAHRLS--T 526
Query: 239 FQMFDQVYLLSGGQCLYQGATDQLVN 264
+ D++ +L G+ + +G ++L+
Sbjct: 527 IKNADRIIVLDNGRIVERGTHEELLA 552
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 75.4 bits (186), Expect = 3e-14
Identities = 52/231 (22%), Positives = 104/231 (45%), Gaps = 34/231 (14%)
Query: 17 SGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKS 76
+ A ++F ++ + L+ + P + +A++GPSGAGKS
Sbjct: 310 GKAPVTAAPAPSLEFSGVSVA------YPGRRP-ALRPVSFTVPPGERVALVGPSGAGKS 362
Query: 77 SLLDVLSGYRSNGVTGQILTNGHS-RNINA--FRRVSCYIQQDDRLQPLL---TI-ENV- 128
+LL++L G+ G I NG + +A +R ++ Q P L TI EN+
Sbjct: 363 TLLNLLLGFVDPT-EGSIAVNGVPLADADADSWRDQIAWVPQ----HPFLFAGTIAENIR 417
Query: 129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND----QKKRLS 184
++ +++ + + +G E + LD P Q +RL+
Sbjct: 418 LARPDASDAEIREALERAG--------LDEFVAALPQG-LDTPIGEGGAGLSGGQAQRLA 468
Query: 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235
+A + + ++ LDEPT LD+++ ++ ++ L+ ++ QGRT++ H+ +
Sbjct: 469 LARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALA-QGRTVLLVTHRLA 518
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 72.4 bits (178), Expect = 4e-14
Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 19/139 (13%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108
+ VL L P+ Q +A++G SG GKS+LL +L+G + G++L + + R
Sbjct: 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS-AGELLAG--TAPLAEARE 81
Query: 109 VSCYIQQDDRLQPLLT-IENV---------------MSLLGLDESQNTRSSQLSGGQKKR 152
+ + QD RL P I+NV ++ +GL + N + LSGGQK+R
Sbjct: 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQR 141
Query: 153 LSIALELINNPRVMFLDEP 171
+++A LI+ P ++ LDEP
Sbjct: 142 VALARALIHRPGLLLLDEP 160
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 71.8 bits (176), Expect = 8e-14
Identities = 75/261 (28%), Positives = 116/261 (44%), Gaps = 35/261 (13%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
+K ++L Y S G LK + ++ AI+G +GAGKS+L L+G
Sbjct: 6 LKVEELNYNYSDG-------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP 58
Query: 89 GVTGQILTNG----HSRN--INAFRRVSCYIQQDDRLQPLLTIENVMSL----LGLDESQ 138
+G+IL +G +SR + V Q D ++ +S L L E +
Sbjct: 59 -SSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDE 117
Query: 139 NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFL 198
+KR+ AL+ + D+PT QKKR++IA L+ P+V+ L
Sbjct: 118 ----------VRKRVDNALKRTGIEHLK--DKPTHCLSFGQKKRVAIAGVLVMEPKVLVL 165
Query: 199 DEPTTGLDSQSCSQCIKLLK-MISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
DEPT GLD S+ +KLL M + G TII H + D V+++ G+ + QG
Sbjct: 166 DEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQG 224
Query: 258 ATDQLV---NYLSSVNLPCPK 275
++ L VNL P+
Sbjct: 225 NPKEVFAEKEMLRKVNLRLPR 245
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 70.8 bits (174), Expect = 8e-14
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 28/140 (20%)
Query: 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--------HSRNIN------ 104
PS +L+A++GPSG+GK++LL +++G +G IL G RN+
Sbjct: 25 IPSGELVALLGPSGSGKTTLLRLIAGLER-PDSGTILFGGEDATDVPVQERNVGFVFQHY 83
Query: 105 -AFRRVSCY--------IQQDDRLQPLLTI-ENVMSLL---GLDESQNTRSSQLSGGQKK 151
FR ++ + ++ P I V LL LD + +QLSGGQ++
Sbjct: 84 ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQ 143
Query: 152 RLSIALELINNPRVMFLDEP 171
R+++A L P+V+ LDEP
Sbjct: 144 RVALARALAVEPKVLLLDEP 163
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 71.7 bits (176), Expect = 8e-14
Identities = 69/248 (27%), Positives = 111/248 (44%), Gaps = 37/248 (14%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR-- 86
I+ +DL + G LK L P A++GP+GAGKS+LL L+G
Sbjct: 5 IEVEDLHFRYKDG-------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP 57
Query: 87 SNG---VTGQILTNGHSRNINAFR-RVSCYIQQ-DDRLQPLLTIENVM---SLLGLDESQ 138
G V G+ + ++ N R +V Q DD++ ++V +GLD+ +
Sbjct: 58 QRGRVKVMGREV---NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDE 114
Query: 139 NTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSNPNDQKKRLSIALELINNPRVM 196
++R+ AL+ + M F D+P QKKR++IA L +P V+
Sbjct: 115 ----------VERRVEEALKAVR----MWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160
Query: 197 FLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256
LDEP LD + +++L + QG+T+I H + DQV +L G+ L +
Sbjct: 161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAA-EWADQVIVLKEGRVLAE 219
Query: 257 GATDQLVN 264
G L +
Sbjct: 220 GDKSLLTD 227
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 70.5 bits (173), Expect = 1e-13
Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+ L+ TV G + +LK + + +AI+GPSG+GKS+LL VL+G +
Sbjct: 7 IEVHHLSKTVGQG----EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL-DD 61
Query: 89 GVTGQILTNGHSRN------INAFRRVSC-YIQQDDRLQPLLT-IENVMSLLGLDESQNT 140
+G++ G + A R ++ Q L P LT +ENV L L +
Sbjct: 62 PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSA 121
Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
S K L A+ L R+ P + +Q+ R+++A P V+F DE
Sbjct: 122 DSRA----GAKALLEAVGL--GKRLTHY--PAQLSGGEQQ-RVALARAFAGRPDVLFADE 172
Query: 201 PTTGLDSQSCSQCIKLL-KMISQQGRTIICTIHQPS 235
PT LD + + LL + ++G T++ H P
Sbjct: 173 PTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ 208
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 70.2 bits (172), Expect = 1e-13
Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 34/229 (14%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH--------SRNINAFRRVSC 111
P + + ++GPSGAGKSSLL VL+ + H + I RR
Sbjct: 26 PEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVG 85
Query: 112 YIQQDDRLQPLLT-----IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM 166
+ Q L P LT IE +LGL + Q L+ A +L+ R+
Sbjct: 86 MVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQ-------------ALARAEKLLKRLRLK 132
Query: 167 -FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
+ D Q++R++IA L+ P+V+ DEPT LD + +Q + ++K +++ G
Sbjct: 133 PYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGI 192
Query: 226 TIICTIH-----QPSATLFQMFDQVYLLSGG--QCLYQGATDQLVNYLS 267
T + H + +A+ + +++ G C + T+ NYLS
Sbjct: 193 TQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFKNYLS 241
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 73.2 bits (180), Expect = 1e-13
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 30/137 (21%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG---HSRNINAFRRVSCYIQQDDRL-- 119
+AI+GPSG+GKS+LL L+G + G++ +G S + + RR QD L
Sbjct: 364 VAILGPSGSGKSTLLATLAGLLDP-LQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFD 422
Query: 120 ----------QPLLTIENVMSLL--------------GLDESQNTRSSQLSGGQKKRLSI 155
+P T E + + L GLD ++LSGG+++RL++
Sbjct: 423 TTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLAL 482
Query: 156 ALELINNPRVMFLDEPT 172
A L+ + ++ LDEPT
Sbjct: 483 ARALLADAPILLLDEPT 499
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 70.3 bits (172), Expect = 2e-13
Identities = 60/240 (25%), Positives = 100/240 (41%), Gaps = 48/240 (20%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS---RNINAFRR 108
L L G + +++ ++GP+GAGKS+LL ++G S +G I G + R
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--SGSIQFAGQPLEAWSATELAR 72
Query: 109 VSCYIQQDDR-------------LQPLLT----IENVMSLLGLDESQNTRSSQLSGGQKK 151
Y+ Q QP T + +V L LD+ ++QLSGG+ +
Sbjct: 73 HRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQ 132
Query: 152 RLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCS 211
R+ +A + L +NP Q ++ LDEP LD S
Sbjct: 133 RVRLA--------AVVLQITPDANPAGQ---------------LLLLDEPMNSLDVAQQS 169
Query: 212 QCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV--NYLSSV 269
+LL + QQG I+ + H + TL + + +LL G+ L G ++++ L+
Sbjct: 170 ALDRLLSALCQQGLAIVMSSHDLNHTL-RHAHRAWLLKRGKLLASGRREEVLTPPVLAQA 228
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 70.0 bits (172), Expect = 2e-13
Identities = 57/245 (23%), Positives = 118/245 (48%), Gaps = 30/245 (12%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I ++++ + T K VL ++ P + +I+GP+GAGKS+LL ++S
Sbjct: 2 ITIENVSKSYGT--------KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK 53
Query: 89 GVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL 145
+G+I +G S + ++Q++ + LT+ +++ SQ +L
Sbjct: 54 D-SGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQ----GRL 108
Query: 146 SGGQKKRLSIALELIN--NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203
+ ++ ++ A+E ++ + +LDE + Q++R IA+ L + + LDEP
Sbjct: 109 TKEDRRIINEAIEYLHLEDLSDRYLDELS----GGQRQRAFIAMVLAQDTDYVLLDEPLN 164
Query: 204 GLDSQSCSQCIKLLKMISQQ-GRTIICTIH---QPSATLFQMFDQVYLLSGGQCLYQGAT 259
LD + Q +K+L+ ++ + G+TI+ +H S D + L G+ + QG+
Sbjct: 165 NLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYS----DHIVALKNGKVVKQGSP 220
Query: 260 DQLVN 264
D+++
Sbjct: 221 DEIIQ 225
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 69.6 bits (171), Expect = 3e-13
Identities = 59/245 (24%), Positives = 96/245 (39%), Gaps = 60/245 (24%)
Query: 55 LCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR-----RV 109
L + +++ ++GP+GAGKS+LL ++G +G I G + + A+ R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG--SGSIQFAG--QPLEAWSAAELARH 70
Query: 110 SCYIQQDDRLQPLL---------------------TIENVMSLLGLDESQNTRSSQLSGG 148
Y+ Q + + V LGLD+ +QLSGG
Sbjct: 71 RAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGG 130
Query: 149 --QKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206
Q+ RL+ L NP Q ++ LDEP LD
Sbjct: 131 EWQRVRLAAV----------VLQVWPDINPAGQ---------------LLLLDEPMNSLD 165
Query: 207 SQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL--VN 264
+ +LL + QQG ++ + H + TL + D+V+LL G+ L G D++
Sbjct: 166 VAQQAALDRLLSELCQQGIAVVMSSHDLNHTL-RHADRVWLLKQGKLLASGRRDEVLTPE 224
Query: 265 YLSSV 269
L+ V
Sbjct: 225 NLAQV 229
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 68.7 bits (168), Expect = 3e-13
Identities = 53/201 (26%), Positives = 99/201 (49%), Gaps = 16/201 (7%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--HSRNINAFRRVSCYIQQDDRLQ 120
+++AIMGPSGAGKS+LL++++G+ +G I N H+ R VS Q+++
Sbjct: 25 EIVAIMGPSGAGKSTLLNLIAGFIEP-ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFA 83
Query: 121 PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL-INNPRVMFLDEPTTSNPNDQ 179
L +N+ LGL + Q Q+K + A ++ I + +LD Q
Sbjct: 84 HLTVRQNIG--LGLHPGLKLNAEQ----QEKVVDAAQQVGIAD----YLDRLPEQLSGGQ 133
Query: 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL-KMISQQGRTIICTIHQPSATL 238
++R+++A L+ ++ LDEP + LD + + L+ ++ S++ RT++ H S
Sbjct: 134 RQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DA 192
Query: 239 FQMFDQVYLLSGGQCLYQGAT 259
+ Q+ ++S G+
Sbjct: 193 RAIASQIAVVSQGKIKVVSDC 213
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 70.8 bits (173), Expect = 4e-13
Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 30/241 (12%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNGHS-RNINAFRR 108
VL +L + +L+A++G SG GK++LL ++G+ ++ G+TG+I + +R
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFL 168
+ Q+ L P L +E+ ++ GL +Q + ++ +R++ AL+L+ L
Sbjct: 80 GLALLFQNYALFPHLKVEDNVAF-GL-RAQKMPKADIA----ERVADALKLVG------L 127
Query: 169 DEPTTSNPND----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ- 223
+ P ++R++IA + P V+ LDEP + LD+ + + + + ++
Sbjct: 128 GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEEL 187
Query: 224 -GRTIICTIHQPSATLFQMFDQVYLLSGG--------QCLYQGATDQLV-NYLSSVNLPC 273
TI+C H L + D+ ++ G Q LY D +L + N+
Sbjct: 188 PELTILCVTHDQDDAL-TLADKAGIMKDGRLAAHGEPQALYDAPADGFAAEFLGAANILP 246
Query: 274 P 274
Sbjct: 247 A 247
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 71.1 bits (175), Expect = 6e-13
Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 33/175 (18%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---SRNINAFR 107
+L ++ + + +AI+GPSG+GKS+LL +L G+ + +G + +G ++ A R
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE-SGSVFYDGQDLAGLDVQAVR 526
Query: 108 RVSCYIQQDDRLQP-----------LLTIENVM---SLLGLDE-------------SQNT 140
R + Q+ RL LT++ + GL E S+
Sbjct: 527 RQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEG- 585
Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRV 195
LSGGQ++RL IA L+ PR++ DE T++ N + +S +LE + R+
Sbjct: 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRI 639
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 67.7 bits (166), Expect = 7e-13
Identities = 46/208 (22%), Positives = 83/208 (39%), Gaps = 58/208 (27%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNGHSRNINAFRRV 109
+ +L + + + I GP+GAGK++LL +L+G R + G++ G I R
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDA--GEVYWQGE--PIQNVRES 72
Query: 110 ---SC-YIQQDDRLQPLLT-------------------IENVMSLLGLDESQNTRSSQLS 146
+ Y+ ++ LT I ++ +GL ++ QLS
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLS 132
Query: 147 GGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206
GQ++R+++A L +P +++ LDEP T LD
Sbjct: 133 AGQQRRVALA-RLWLSPAPLWI-----------------------------LDEPFTALD 162
Query: 207 SQSCSQCIKLLKMISQQGRTIICTIHQP 234
+ + L+ + QG ++ T HQP
Sbjct: 163 KEGVALLTALMAAHAAQGGIVLLTTHQP 190
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 69.8 bits (171), Expect = 8e-13
Identities = 56/258 (21%), Positives = 104/258 (40%), Gaps = 66/258 (25%)
Query: 58 RFPSNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNGHSRN-------INAFRRV 109
P + AI G SG+GK++L+ +++G R + G+I+ NG + + +R
Sbjct: 19 TLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDE--GEIVLNGRTLFDSRKGIFLPPEKRR 76
Query: 110 SCYIQQDDRLQPLLTI--------------------ENVMSLLGLDESQNTRSSQLSGGQ 149
Y+ Q+ RL P L++ E V+ LLG+ +LSGG+
Sbjct: 77 IGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGE 136
Query: 150 KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS 209
K+R++I L+++PR++ +DEP + LD
Sbjct: 137 KQRVAIGRALLSSPRLLLMDEPLAA------------------------------LDDPR 166
Query: 210 CSQCIKLLKMISQQGRT-IICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSS 268
+ + L+ + + I+ H L ++ D+V +L G+ G ++ +S
Sbjct: 167 KYEILPYLERLHAEFGIPILYVSHSLQEVL-RLADRVVVLEDGRVAAAGPIAEV---WAS 222
Query: 269 VNLPCPKYHNPADFVIEL 286
+LP +IE
Sbjct: 223 PDLPW-LAREDQGSLIEG 239
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 68.1 bits (166), Expect = 1e-12
Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 21/226 (9%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG----YRSN-GVTGQILTNGHS--- 100
K +LK++ + P+N + IMGPSG+GKS+LL VL+ Y S V G++L G
Sbjct: 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQ 82
Query: 101 -RNINAFRRVSCYIQQDDRLQPLLTIENVMSLL---GLDESQNTRSSQLSGGQKKRLSIA 156
I + V QQ + L +N+ L G+ E + + ++ +++ +
Sbjct: 83 IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIK--KIVEECLRKVGLW 140
Query: 157 LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL 216
E+ + L+ P + Q++RL+IA L P+V+ +DEPT+ +D + KL
Sbjct: 141 KEVYDR-----LNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKL 195
Query: 217 LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
+ + + I+ H P ++ D V L G+ + G+++++
Sbjct: 196 ITELKNE-IAIVIVSHNPQQVA-RVADYVAFLYNGELVEWGSSNEI 239
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 70.5 bits (173), Expect = 1e-12
Identities = 70/272 (25%), Positives = 128/272 (47%), Gaps = 37/272 (13%)
Query: 4 VEFELSNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQ 63
V+ E N +E +I D++Y S G G ++L ++ N
Sbjct: 454 VDSEFINKKKRTELNNLNG-----DIVINDVSY--SYGYG-----SNILSDISLTIKMNS 501
Query: 64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NINAFRRVSCYIQQDDRLQ 120
I+G SG+GKS+L +L G+ +G+IL NG S + + R+ Y+ Q+
Sbjct: 502 KTTIVGMSGSGKSTLAKLLVGFFQAR-SGEILLNGFSLKDIDRHTLRQFINYLPQE---- 556
Query: 121 PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL---INNPRVMF---LDEPTTS 174
P + +++ L L +N ++ IA E+ I N + + L E +S
Sbjct: 557 PYIFSGSILENLLLGAKENVSQDEI----WAACEIA-EIKDDIENMPLGYQTELSEEGSS 611
Query: 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI-KLLKMISQQGRTIICTIHQ 233
QK+R+++A L+ + +V+ LDE T+ LD+ + + + LL + Q +TII H+
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHR 668
Query: 234 PSATLFQMFDQVYLLSGGQCLYQGATDQLVNY 265
S + D++ +L G+ + QG+ D+L++
Sbjct: 669 LSVA--KQSDKIIVLDHGKIIEQGSHDELLDR 698
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 68.7 bits (168), Expect = 1e-12
Identities = 65/242 (26%), Positives = 105/242 (43%), Gaps = 60/242 (24%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---SRNINA 105
K V+ L S + ++GP+GAGKS++ ++ G S G+I G +R A
Sbjct: 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD-AGKITVLGVPVPARARLA 112
Query: 106 FRRVSCYIQQDDRLQPLLT------------------IENVM-SLLG---LDESQNTRSS 143
R+ + Q D L T IE V+ SLL L+ + R S
Sbjct: 113 RARIGV-VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVS 171
Query: 144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203
LSGG K+RL++A LIN+P+++ L DEPTT
Sbjct: 172 DLSGGMKRRLTLARALINDPQLLIL------------------------------DEPTT 201
Query: 204 GLDSQSCSQCIKLLKMISQQGRTIICTIH-QPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
GLD + + L+ + +G+TI+ T H A ++ D++ +L G+ + +G L
Sbjct: 202 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAE--RLCDRLCVLEAGRKIAEGRPHAL 259
Query: 263 VN 264
++
Sbjct: 260 ID 261
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 68.4 bits (168), Expect = 2e-12
Identities = 54/243 (22%), Positives = 105/243 (43%), Gaps = 74/243 (30%)
Query: 62 NQLIAIMGPSGAGKS----SLLDVLSGYRSNGVTGQILTNG------HSRNINAFR--RV 109
+++ I+G SG+GKS +++ +L + V G+IL +G + + R +
Sbjct: 31 GEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEI 90
Query: 110 SCYIQQD--DRLQPLLTIEN------------------------VMSLLGLDESQNTRSS 143
+ I QD L P++TI + ++ L+G+ + + S
Sbjct: 91 A-MIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKS 149
Query: 144 ---QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
+LSGG ++R+ IA+ L NP+++ IA DE
Sbjct: 150 YPHELSGGMRQRVMIAMALALNPKLL------------------IA------------DE 179
Query: 201 PTTGLDSQSCSQCIKLLK-MISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259
PTT LD +Q + LLK + ++G +I H + ++ D+V ++ G+ + +G
Sbjct: 180 PTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAGRIVEEGPV 238
Query: 260 DQL 262
+++
Sbjct: 239 EEI 241
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 70.0 bits (172), Expect = 2e-12
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 32/161 (19%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
++F++++ + +LK+L R IAI+GP+GAGKS+LL +L+G
Sbjct: 322 LEFENVSKGYD-------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG-ELG 373
Query: 89 GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLD------------- 135
++G + G + I F Q D L P T+ +S D
Sbjct: 374 PLSGTV-KVGETVKIGYFD------QHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426
Query: 136 ----ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
E Q LSGG+K RL +A L+ P ++ LDEPT
Sbjct: 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT 467
Score = 61.1 bits (149), Expect = 9e-10
Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 54/188 (28%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I ++L+ + +L+N+ + I ++G +GAGKS+LL +L+G
Sbjct: 4 ITLENLSLAYGD--------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAG-ELE 54
Query: 89 GVTGQILTNGHSR-------------------NINAFRRVSCYIQQDDRLQPLLT----- 124
+G++ R I F + + + + LL
Sbjct: 55 PDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDE 114
Query: 125 --------------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
E + LG + + S LSGG ++R+++A L+ P
Sbjct: 115 LLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPD 173
Query: 165 VMFLDEPT 172
++ LDEPT
Sbjct: 174 LLLLDEPT 181
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 66.9 bits (163), Expect = 2e-12
Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 21/227 (9%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGHS- 100
K +KN+ + NQ+ AI+GPSG GK++LL D + G+R V G+I G
Sbjct: 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR---VEGKIYFKGQDI 72
Query: 101 ----RNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIA 156
++ +R+ + Q P+ +NV G +L ++ L A
Sbjct: 73 YDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVA--FGPRIHGVKSKHKLDRIVEESLKKA 130
Query: 157 LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL 216
L + + L++P T Q++RL IA L P V+ LDEPT+ LD + + KL
Sbjct: 131 -ALWDEVKSE-LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKL 188
Query: 217 LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
L+ +S+ TI+ H + ++ D + + G+ + G T ++V
Sbjct: 189 LEELSEN-YTIVIVTHNIGQAI-RIADYIAFMYRGELIEYGPTREIV 233
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 66.5 bits (163), Expect = 3e-12
Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 49/167 (29%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGHS- 100
K+ LKN+ P NQ+ A++GPSG GKS+LL D++ G R + G++L +G
Sbjct: 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR---IEGKVLFDGQDI 70
Query: 101 ----RNINAFRRVSCYIQQDDRLQPLLTIENVM--------------------SLLG--- 133
++ RR + Q P+ +N+ SL
Sbjct: 71 YDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAAL 130
Query: 134 -------LDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
L +S LSGGQ++RL IA L P V+ LDEPT+
Sbjct: 131 WDEVKDRLHDSALG----LSGGQQQRLCIARALAVEPEVLLLDEPTS 173
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 66.8 bits (164), Expect = 3e-12
Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 27/219 (12%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHS-RNINAFRRVSCYIQ---QDD 117
+++ ++GP+GAGK++L ++++G Y+ + G ++ G + R I Q
Sbjct: 31 EIVGLIGPNGAGKTTLFNLITGFYKPSS--GTVIFRGRDITGLPPHRIARLGIARTFQIT 88
Query: 118 RLQPLLT-IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFL-------- 168
RL P LT +ENV +G +K A E R L
Sbjct: 89 RLFPGLTVLENVA--VGAHARLGLSGLLGRPRARKEEREARE-----RARELLEFVGLGE 141
Query: 169 --DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GR 225
D P + Q++RL IA L P+++ LDEP GL+ + + +L++ + + G
Sbjct: 142 LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGV 201
Query: 226 TIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
TI+ H + + D++ +L+ G+ + +G +++ N
Sbjct: 202 TILLIEHDMKL-VMGLADRIVVLNYGEVIAEGTPEEVRN 239
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 66.6 bits (163), Expect = 3e-12
Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 17/228 (7%)
Query: 40 TGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH 99
+ ++ K +L +L + + AI+GP+GAGK++LL +L+G +G + G
Sbjct: 35 KNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS-SGDVTLLGR 93
Query: 100 SR---NINAFRR-----VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK 151
R VS + + R + T+ +V+ L G S L+
Sbjct: 94 RFGKGETIFELRKRIGLVSSELHE--RFRVRETVRDVV-LSGFFASIGIYQEDLTAEDLA 150
Query: 152 RLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCS 211
LEL+ + D P S +++R+ IA L+ +P ++ LDEP GLD +
Sbjct: 151 AAQWLLELLGAKHL--ADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIARE 208
Query: 212 QCIKLL--KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
Q + L S ++ H F LL G+ + QG
Sbjct: 209 QLLNRLEELAASPGAPALLFVTHHAEEIP-PCFTHRLLLKEGEVVAQG 255
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 66.0 bits (161), Expect = 4e-12
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 41/178 (23%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRS 87
+KF+++T+ T + VL+++ ++ A++GPSG+GKS+++ +L Y+
Sbjct: 12 VKFQNVTFAYPT-----RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP 66
Query: 88 NGVTGQILTNGHSRNINAF-----RRVSCYIQQDDRL------------QPLLTIENVMS 130
G GQ+L +G I+ + + Q+ L + E V
Sbjct: 67 QG--GQVLLDGKP--ISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKE 122
Query: 131 L--------------LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
G D + SQLSGGQK+R++IA LI NP+V+ LDE T++
Sbjct: 123 AAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSA 180
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 67.4 bits (165), Expect = 4e-12
Identities = 49/246 (19%), Positives = 95/246 (38%), Gaps = 58/246 (23%)
Query: 44 FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS--R 101
K+ + ++++ P +++ +G +GAGKS+ L +L+G +G++ NG R
Sbjct: 32 RKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTG-LLLPTSGKVRVNGKDPFR 90
Query: 102 NINAFRRVSCY-------------IQQDDRLQPLL----------TIENVMSLLGLDESQ 138
+ R + L+ ++ + +L L+
Sbjct: 91 RREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFL 150
Query: 139 NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVM-F 197
+LS GQ+ R +A L++ P+V+FLDEPT + L++ + F
Sbjct: 151 KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPT------------VGLDVNAQANIREF 198
Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
L E ++ T++ T H + + D+V L+ GQ ++ G
Sbjct: 199 LKEYN------------------EERQATVLLTTHI-FDDIATLCDRVLLIDQGQLVFDG 239
Query: 258 ATDQLV 263
QL
Sbjct: 240 TLAQLQ 245
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 65.8 bits (161), Expect = 4e-12
Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 26/147 (17%)
Query: 66 AIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSCYIQQDDRLQPLLT 124
I+GP+G+GKS LL+ ++G+ +G+IL NG N+ +R Y+ Q+ L P +T
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKP-DSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMT 87
Query: 125 IE----------------------NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN 162
+ + +LG+D N + LSGG+++R++IA L+ N
Sbjct: 88 VYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVN 147
Query: 163 PRVMFLDEPTTSNPNDQKKRLSIALEL 189
P+++ LDEP ++ D + + + EL
Sbjct: 148 PKILLLDEPFSA--LDVRTKEKLREEL 172
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 66.2 bits (162), Expect = 4e-12
Identities = 57/263 (21%), Positives = 113/263 (42%), Gaps = 61/263 (23%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+ ++L+Y++ + +L + +++AI+GP+GAGKS+LL LSG S
Sbjct: 2 IRAENLSYSL--------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP 53
Query: 89 GVTGQILTNGHSRNI---NAFRRVSCYIQQDDRLQPLLTIENVMSL------LGLDESQN 139
+G++ NG N R + Q+ L T++ V+ + G + ++
Sbjct: 54 D-SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEED 112
Query: 140 TRSS------------------QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181
R + LSGG+++R+ +A RV
Sbjct: 113 ERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLA-------RV---------------- 149
Query: 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQM 241
L+ + + R +FLDEPT+ LD ++L + ++++G ++ +H + Q
Sbjct: 150 -LAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAA-QY 207
Query: 242 FDQVYLLSGGQCLYQGATDQLVN 264
D++ LL G+ + G+ ++
Sbjct: 208 ADRIVLLHQGRVIASGSPQDVLT 230
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 65.9 bits (160), Expect = 6e-12
Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 21/203 (10%)
Query: 41 GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQ 93
G+ F VLKN+ FP Q+ AI+GPSG GKS+LL D++SG R G
Sbjct: 9 GVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLL 68
Query: 94 ILTNGHSRN---INAFRRVSCYIQQDDRLQPLLTIENVM---SLLGLDESQNTRSSQLSG 147
N +S N +N +RV QQ + P +NV +LG + +R ++
Sbjct: 69 DNENIYSPNLDVVNLRKRVGMVFQQPNPF-PKSIFDNVAFGPRMLGT--TAQSRLDEVVE 125
Query: 148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207
++ ++ E+ +N L + + Q++RL IA L P V+ +DEP + LD
Sbjct: 126 KSLRQAALWDEVKDN-----LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDP 180
Query: 208 QSCSQCIKLLKMISQQGRTIICT 230
S + +L++ + Q I T
Sbjct: 181 VSTMRIEELMQELKQNYTIAIVT 203
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 65.0 bits (159), Expect = 7e-12
Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 26/131 (19%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--HSRNINAFRRVSCYIQQDDRLQPL 122
+AI+GPSGAGKS+LL++++G+ + +G + NG H+ + R VS Q+++ L
Sbjct: 28 VAILGPSGAGKSTLLNLIAGFLT-PASGSLTLNGQDHTTTPPSRRPVSMLFQENN-LFSH 85
Query: 123 LTIENVMSL-----LGLDESQNTR-----------------SSQLSGGQKKRLSIALELI 160
LT+ + L L L+ +Q + QLSGGQ++R+++A L+
Sbjct: 86 LTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLV 145
Query: 161 NNPRVMFLDEP 171
++ LDEP
Sbjct: 146 REQPILLLDEP 156
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 64.1 bits (156), Expect = 1e-11
Identities = 44/212 (20%), Positives = 91/212 (42%), Gaps = 49/212 (23%)
Query: 41 GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH- 99
L +++ + + L + + + + GP+G+GK++LL +L+G S + G++L NG
Sbjct: 5 ELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL-SPPLAGRVLLNGGP 63
Query: 100 -SRNINAFRRVSCYIQQDDRLQPLLT----------------IENVMSLLGLDESQNTRS 142
++ R Y+ ++ L+ +E ++ +GL+ ++
Sbjct: 64 LDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPV 123
Query: 143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202
+QLS GQ++R+++A RL L++ + LDEPT
Sbjct: 124 AQLSAGQQRRVALA-------------------------RL-----LLSGRPLWILDEPT 153
Query: 203 TGLDSQSCSQCIKLLKMISQQGRTIICTIHQP 234
T LD ++ + + +G ++ T HQ
Sbjct: 154 TALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 64.5 bits (158), Expect = 1e-11
Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 29/148 (19%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN---AFR 107
+L+ + P ++ ++G +G GK++LL L G +G I +G +I
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMG-LLPVKSGSIRLDG--EDITKLPPHE 71
Query: 108 RVS---CYIQQDDRLQPLLTI-EN---VMSLLG----------------LDESQNTRSSQ 144
R Y+ Q + P LT+ EN ++ L L E R
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGD 131
Query: 145 LSGGQKKRLSIALELINNPRVMFLDEPT 172
LSGGQ+++L+IA L+ P+++ LDEPT
Sbjct: 132 LSGGQQQQLAIARALVTRPKLLLLDEPT 159
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 64.3 bits (157), Expect = 1e-11
Identities = 55/235 (23%), Positives = 95/235 (40%), Gaps = 63/235 (26%)
Query: 62 NQLIAIMGPSGAGKS----SLLDVLSGYRSNGVTGQILTNGHSRNINAFR-RVSCYIQQD 116
+++A++G SG+GKS ++L +L +G+IL +G + R R I Q+
Sbjct: 12 GEVLALVGESGSGKSLTCLAILGLL-PPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQN 70
Query: 117 DR--LQPLLTI-----ENVMSLL-----------------GLDESQNTRSS---QLSGGQ 149
R PL T+ E + SL GL + + QLSGG
Sbjct: 71 PRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGM 130
Query: 150 KKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS 209
+R+ IAL L+ P + DEPTT L+++N RV+ L
Sbjct: 131 LQRVMIALALLLEPPFLIADEPTT------------DLDVVNQARVLKL----------- 167
Query: 210 CSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
L ++ G I+ H + ++ D+V ++ G+ + +G ++
Sbjct: 168 ------LRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIFY 215
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 64.1 bits (156), Expect = 1e-11
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 24/133 (18%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGYRSNG--VTGQILTNGHSRN-INAFRRVSCYIQQDDRL 119
+++ +MGPSG GKS+LL + G + TG++ N + + A +R + QD L
Sbjct: 29 EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALL 88
Query: 120 QPLLTI-ENVMSLL--------------------GLDESQNTRSSQLSGGQKKRLSIALE 158
P L++ +N++ L GLD + + + LSGGQ+ R+++
Sbjct: 89 FPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRA 148
Query: 159 LINNPRVMFLDEP 171
L+ P+ + LDEP
Sbjct: 149 LLAQPKALLLDEP 161
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 65.6 bits (160), Expect = 1e-11
Identities = 58/191 (30%), Positives = 89/191 (46%), Gaps = 21/191 (10%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---SRNINA 105
K V+ L + ++GP+GAGK++ L +L G ++ G I G SR +A
Sbjct: 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL-THPDAGSISLCGEPVPSRARHA 78
Query: 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ-KKRLSIALE---LIN 161
+RV + Q D L P T+ + + G R LS + + LE L N
Sbjct: 79 RQRVGV-VPQFDNLDPDFTVRENLLVFG-------RYFGLSAAAARALVPPLLEFAKLEN 130
Query: 162 NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS 221
D K+RL++A L+N+P V+ LDEPTTGLD Q+ + L+ +
Sbjct: 131 KA-----DAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL 185
Query: 222 QQGRTIICTIH 232
+G+TI+ T H
Sbjct: 186 ARGKTILLTTH 196
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 64.4 bits (157), Expect = 2e-11
Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 56/224 (25%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS--RNINAFRR--------VSCY 112
++ ++G +GAGK++LL +++ +G++ +G R+ + RR Y
Sbjct: 29 EITGLLGENGAGKTTLLRMIATLLIPD-SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLY 87
Query: 113 --------IQQDDRLQPLL------TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE 158
++ RL L I + L L E + R + S G K++++IA
Sbjct: 88 ARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARA 147
Query: 159 LINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK 218
L+++P ++ LDEP T+GLD ++ + +K
Sbjct: 148 LVHDPSILVLDEP------------------------------TSGLDIRTRRKFHDFIK 177
Query: 219 MISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
+ +GR +I + H + + D+V +L G+ + +G+ + L
Sbjct: 178 QLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEAL 220
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 65.4 bits (160), Expect = 2e-11
Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 44/174 (25%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+F++++ K + ++ + + ++GPSG+GK++ L ++ N
Sbjct: 2 IEFENVSKRYG--------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMI-----N 48
Query: 89 GV----TGQILTNGHS-RNINAF--RRVSCYIQQDDRLQPLLTI-ENV------------ 128
+ +G+IL +G +++ RR Y+ Q L P LT+ EN+
Sbjct: 49 RLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKE 108
Query: 129 ---------MSLLGLDESQ--NTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
+ L+GLD S+ + +LSGGQ++R+ +A L +P ++ +DEP
Sbjct: 109 RIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEP 162
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 65.7 bits (161), Expect = 2e-11
Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 40/171 (23%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH--------S 100
K+V+ NL + + + ++GPSG GK+++L +++G+ +G+I+ +G +
Sbjct: 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE-TPDSGRIMLDGQDITHVPAEN 85
Query: 101 RNINAFRRVSCYIQQDDRLQPLLTI-ENV---------------------MSLLGLDESQ 138
R++N + Q L P +T+ ENV + ++ L+E
Sbjct: 86 RHVNT-------VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFA 138
Query: 139 NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189
+ QLSGGQ++R++IA ++N P+V+ LDE ++ D K R + EL
Sbjct: 139 QRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSA--LDYKLRKQMQNEL 187
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 64.0 bits (156), Expect = 2e-11
Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 43/177 (24%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL---DVLSGY 85
I+FK+ VS G P VL N+ +++ I+GPSG+GKS+LL + L
Sbjct: 2 IEFKN----VSKHFG----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI 53
Query: 86 RSNGVTGQILTNGHSRN-----INAFRRVSCYIQQDDRLQPLLT-IENVM---------- 129
S G ++ +G N R+ + + Q L P LT +ENVM
Sbjct: 54 TS----GDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGAS 109
Query: 130 ---------SLL---GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
LL GL E + S+LSGGQ++R++IA L P++M DEPT++
Sbjct: 110 KEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSA 166
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 63.9 bits (156), Expect = 2e-11
Identities = 66/237 (27%), Positives = 103/237 (43%), Gaps = 50/237 (21%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVLS---GYRSNGVTGQILTNGHSRN---------INAFR 107
P + + ++GPSGAGKSSLL VL+ RS G + G+ + I R
Sbjct: 26 PQGETLVLLGPSGAGKSSLLRVLNLLEMPRS----GTLNIAGNHFDFSKTPSDKAIRELR 81
Query: 108 R-VSCYIQQDDRLQPLLT-----IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN 161
R V QQ + L P LT IE +LGL + Q R A +L+
Sbjct: 82 RNVGMVFQQYN-LWPHLTVQQNLIEAPCRVLGLSKDQ----------ALAR---AEKLLE 127
Query: 162 NPRVMFLDEPTTSNP----NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL 217
R L P Q++R++IA L+ P+V+ DEPT LD + +Q + ++
Sbjct: 128 RLR---LKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184
Query: 218 KMISQQGRTIICTIHQPS-----ATLFQMFDQVYLLSGG--QCLYQGATDQLVNYLS 267
+ +++ G T + H+ A+ + +++ G C Q T+ NYLS
Sbjct: 185 RELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQPQTEAFKNYLS 241
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 63.8 bits (156), Expect = 2e-11
Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 45/177 (25%)
Query: 30 KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG 89
+ KDL V K++LK + ++ AIMGP+G+GKS+L + G+
Sbjct: 5 EIKDLHVEVE-------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE 57
Query: 90 VT-GQILTNGHS---------------------------RNINAFRRVSCYIQQDDRLQP 121
VT G+IL +G N + F R + ++ R
Sbjct: 58 VTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSD-FLRAAMNARRGAR--G 114
Query: 122 LLT-----IENVMSLLGLDESQNTRS--SQLSGGQKKRLSIALELINNPRVMFLDEP 171
+L ++ LLGLDE R SGG+KKR I L+ P++ LDEP
Sbjct: 115 ILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEP 171
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 63.6 bits (155), Expect = 3e-11
Identities = 69/254 (27%), Positives = 104/254 (40%), Gaps = 57/254 (22%)
Query: 39 STGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVT 91
+ GL F L ++ F NQ+ A++GPSG GKS+ L D++ G R V
Sbjct: 9 ARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR---VE 65
Query: 92 GQILTNG---HSRNINAF---RRVSCYIQQDDRLQPLLTIENVM-----------SLLGL 134
G+IL +G + +++ RRV Q+ + P ENV + L
Sbjct: 66 GEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF-PKSIFENVAYGLRVNGVKDKAYLAE 124
Query: 135 DESQNTRSSQLSGGQKKRLS-IALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNP 193
++ R + L K RL AL L Q++RL IA L P
Sbjct: 125 RVERSLRHAALWDEVKDRLHESALGL----------------SGGQQQRLCIARALAVEP 168
Query: 194 RVMFLDEPTTGLD---SQSCSQCIKLLKMISQQGRTIICTIH--QPSATLFQMFDQVYLL 248
V+ +DEP + LD +Q + I LK TII H Q +A ++ D
Sbjct: 169 EVLLMDEPASALDPIATQKIEELIHELK----ARYTIIIVTHNMQQAA---RVSDVTAFF 221
Query: 249 SGGQCLYQGATDQL 262
G+ + G T+Q+
Sbjct: 222 YMGKLIEVGPTEQI 235
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 63.9 bits (155), Expect = 3e-11
Identities = 62/229 (27%), Positives = 100/229 (43%), Gaps = 26/229 (11%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGHS- 100
K +KN+ + A++GPSG GK++ L D+ G R VTG+IL +G
Sbjct: 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGAR---VTGRILLDGQDI 73
Query: 101 -----RNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSI 155
+ RRV Q+ + + +NV++ L L ++ R + ++
Sbjct: 74 YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRD-RDHLMEVAERSLRGA 132
Query: 156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK 215
AL R L P T Q++RL IA L P ++ +DEPT+ LD S ++
Sbjct: 133 ALWDEVKDR---LKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIED 189
Query: 216 LLKMISQQGRTIICT--IHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
L+ + + II T +HQ + ++ D G + G TDQL
Sbjct: 190 LMTDLKKVTTIIIVTHNMHQAA----RVSDTTSFFLVGDLVEHGPTDQL 234
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 65.8 bits (161), Expect = 3e-11
Identities = 61/273 (22%), Positives = 105/273 (38%), Gaps = 73/273 (26%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKS----SLLDVLSG 84
+ ++L+ + +K + + + +A++G SG+GKS S+L +L
Sbjct: 7 LSIRNLSVAFHQE----GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS 62
Query: 85 YRSNGVTGQILTNGHS------RNINAFR--RVSCYIQQD-DRLQPLLTIEN-------- 127
+ +G IL +G R + R ++ Q+ L PL TI
Sbjct: 63 PAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRL 122
Query: 128 ------------VMSLL---GLDESQNTRSS---QLSGGQKKRLSIALELINNPRVMFLD 169
+ LL G+ E + + +LSGGQ++R VM
Sbjct: 123 HRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQR------------VM--- 167
Query: 170 EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIIC 229
IA+ L N P ++ DEPTT LD +Q + LLK + + I
Sbjct: 168 ---------------IAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAIL 212
Query: 230 TIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
I + + D+VY++ G+ + G T+ L
Sbjct: 213 FITHDLGIVRKFADRVYVMQHGEIVETGTTETL 245
Score = 57.7 bits (140), Expect = 1e-08
Identities = 58/254 (22%), Positives = 110/254 (43%), Gaps = 48/254 (18%)
Query: 34 LTYTVSTGLGFKQEPKDV--LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT 91
+ + + G ++ + + + Q + ++G SG+GKS+L L R
Sbjct: 284 VWFPIKGGF-LRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALL--RLIPSQ 340
Query: 92 GQILTNG---HSRNINAFRRVSCYIQ---QD--DRLQPLLTIENVMSLLGLDESQNTRSS 143
G+I +G + R + +Q QD L P +T+ ++ E
Sbjct: 341 GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIE-----EGLRVHEP 395
Query: 144 QLSGGQK-KRLSIALELINNPRVMFLDEPTTSN-PND----QKKRLSIALELINNPRVMF 197
+LS ++ +R+ ALE + LD T + P++ Q++R++IA LI P ++
Sbjct: 396 KLSAAERDQRVIEALEEVG------LDPATRNRYPHEFSGGQRQRIAIARALILKPELIL 449
Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLF---------QMFDQVYLL 248
LDEPT+ LD +Q + LL+ + QQ + + LF + +V ++
Sbjct: 450 LDEPTSALDRSVQAQVLDLLRDL-QQKHGL--------SYLFISHDLAVVRALCHRVIVM 500
Query: 249 SGGQCLYQGATDQL 262
G+ + QG T+ +
Sbjct: 501 RDGKIVEQGPTEAV 514
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 63.6 bits (155), Expect = 3e-11
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 27/146 (18%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFR 107
K L+++ S +L+ ++GPSG GK++LL++++G+ G I +G A R
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ-HGSITLDGKPVEGPGAER 72
Query: 108 RVSCYIQQDDRLQPLLTI-ENV---------------------MSLLGLDESQNTRSSQL 145
V + Q++ L P + +NV + +GL+ ++ QL
Sbjct: 73 GV---VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQL 129
Query: 146 SGGQKKRLSIALELINNPRVMFLDEP 171
SGGQ++R+ IA L NP+++ LDEP
Sbjct: 130 SGGQRQRVGIARALAANPQLLLLDEP 155
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 63.1 bits (154), Expect = 4e-11
Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 24/224 (10%)
Query: 44 FKQEPKDV--LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--- 98
FK++ ++V LK + +++ +GP+GAGK++ L +LSG +G++ G
Sbjct: 27 FKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP-TSGEVRVAGLVP 85
Query: 99 HSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLL----GLDESQNTRSSQLSGGQKKRLS 154
R RR+ Q +L L + + LL L ++ + + LS
Sbjct: 86 WKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKK-------RLDELS 138
Query: 155 IALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI 214
L+L LD P Q+ R IA L++ P ++FLDEPT GLD +
Sbjct: 139 ELLDLEE-----LLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIR 193
Query: 215 KLLK-MISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
LK ++G T++ T H + + +V ++ G+ LY G
Sbjct: 194 NFLKEYNRERGTTVLLTSHY-MKDIEALARRVLVIDKGRLLYDG 236
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 60.5 bits (148), Expect = 5e-11
Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 46/144 (31%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+ ++L+ T K +LK++ I ++G +GAGKS+LL +++G
Sbjct: 1 IELENLSKTY--------GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG-ELE 51
Query: 89 GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG 148
G + G + I Y QLSGG
Sbjct: 52 PDEGIVTW-GSTVKI-------GYF-----------------------------EQLSGG 74
Query: 149 QKKRLSIALELINNPRVMFLDEPT 172
+K RL++A L+ NP ++ LDEPT
Sbjct: 75 EKMRLALAKLLLENPNLLLLDEPT 98
Score = 30.5 bits (70), Expect = 1.2
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 216 LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252
LLK+I+ + + S F+Q LSGG+
Sbjct: 42 LLKLIAGELEPDEGIVTWGSTVKIGYFEQ---LSGGE 75
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 62.4 bits (152), Expect = 5e-11
Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 28/205 (13%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG---HSRNINAFRRVSCYIQQDDRL 119
++ ++GP+GAGK++ L +L+G G +G A RR+ ++ L
Sbjct: 32 EVTGLLGPNGAGKTTTLRMLAGLLEPD-AGFATVDGFDVVKEPAEARRRLG-FVSDSTGL 89
Query: 120 QPLLTI-ENVM---SLLGLD-ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
LT EN+ L GL + R +L+ RL + LD
Sbjct: 90 YDRLTARENLEYFAGLYGLKGDELTARLEELA----DRLGME---------ELLDRRVGG 136
Query: 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH-- 232
+++++IA L+++P V+ LDEPTTGLD + + ++ + G+ I+ + H
Sbjct: 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM 196
Query: 233 QPSATLFQMFDQVYLLSGGQCLYQG 257
Q L D+V +L G+ +Y+G
Sbjct: 197 QEVERL---CDRVVVLHRGRVVYEG 218
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 63.3 bits (154), Expect = 6e-11
Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 65/230 (28%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS--RNINAFRRVSCYIQQDDRL- 119
+++ +GP+GAGKS+ + +++GY +G + G +N +R Y+ + + L
Sbjct: 29 RIVGFLGPNGAGKSTTMKIITGYLPPD-SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLY 87
Query: 120 -----QPLLT----------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE 158
+ L +E ++ L+GL Q+ + QLS G ++R+ +A
Sbjct: 88 LDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQA 147
Query: 159 LINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK 218
LI++P+V+ LDEP TTGLD + ++K
Sbjct: 148 LIHDPKVLILDEP------------------------------TTGLDPNQLVEIRNVIK 177
Query: 219 MISQQGRTIICTIHQPSATLFQ----MFDQVYLLSGGQCLYQGATDQLVN 264
I + +TII + H + Q + D+V +++ G+ + D+L
Sbjct: 178 NIGKD-KTIILSTH-----IMQEVEAICDRVIIINKGKIVADKKLDELSA 221
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 62.3 bits (152), Expect = 7e-11
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 40/163 (24%)
Query: 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGHSRNINA 105
E K++LK + ++ AIMGP+G+GKS+L ++G+ S VT G IL G ++
Sbjct: 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQ--DLLE 68
Query: 106 ----------------------------FRRVSCYIQQDDRLQPLLT-------IENVMS 130
F R + ++ R + L ++ ++
Sbjct: 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLA 128
Query: 131 LLGLDESQNTRSSQ--LSGGQKKRLSIALELINNPRVMFLDEP 171
LLG+DE RS SGG+KKR I + P++ LDE
Sbjct: 129 LLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEI 171
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 62.2 bits (152), Expect = 7e-11
Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 41/170 (24%)
Query: 37 TVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT 96
+VS GFK L +L +L I+GP+GAGK++++DV++G ++ G +L
Sbjct: 9 SVSFD-GFK-----ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITG-KTRPDEGSVLF 61
Query: 97 NGHS------------------------RNINAFRRVSCYIQQDDRLQPLLT-------- 124
G N+ F + + +D + L
Sbjct: 62 GGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEK 121
Query: 125 --IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
IE V+ +GL + + + LS GQK+ L I + L+ +P+++ LDEP
Sbjct: 122 DRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV 171
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 63.4 bits (154), Expect = 8e-11
Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 61/240 (25%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG-------HSRNIN 104
L N+ P+ Q+ ++G SGAGKS+L+ ++ +G ++ +G +S
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN-LLERPTSGSVIVDGQDLTTLSNSELTK 79
Query: 105 AFRRVSCYIQQDDRLQPLLTIENV---------------------MSLLGLDESQNTRSS 143
A R++ Q + L NV ++L+GL + ++ S
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPS 139
Query: 144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203
LSGGQK+R++IA L +NP+V+ DE T++ LD TT
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSA-----------------------LDPATT 176
Query: 204 GLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
QS ++LLK I+++ G TI+ H+ + ++ D V ++S G+ + QG ++
Sbjct: 177 ----QS---ILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTVSEI 228
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 62.4 bits (152), Expect = 8e-11
Identities = 58/254 (22%), Positives = 102/254 (40%), Gaps = 75/254 (29%)
Query: 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---------- 99
+VLK + + + +I+I+G SG+GKS+ L ++ + G I NG
Sbjct: 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEKPSAGSIRVNGEEIRLKRDKDG 78
Query: 100 ------SRNINAFRRVSCYIQQDDRLQPLLTI-ENVMS-------------------LL- 132
R + R + Q L +T+ ENV+ L
Sbjct: 79 QLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLA 138
Query: 133 --GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI 190
G+ E + + LSGGQ++R++IA L A+E
Sbjct: 139 KVGIAEKADAYPAHLSGGQQQRVAIARAL--------------------------AME-- 170
Query: 191 NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLF--QMFDQVYLL 248
P VM DEPT+ LD + + +K+++ ++++GRT++ H+ F + V L
Sbjct: 171 --PEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG---FARDVSSHVIFL 225
Query: 249 SGGQCLYQGATDQL 262
G+ +G +Q+
Sbjct: 226 HQGKIEEEGPPEQV 239
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 62.4 bits (152), Expect = 8e-11
Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 42/171 (24%)
Query: 37 TVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT 96
+VS G GFK L +L +L ++GP+GAGK++L+DV++G ++ G++L
Sbjct: 12 SVSFG-GFK-----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITG-KTRPQEGEVLF 64
Query: 97 NGHS--RNINAFRRVSCYI-----------------------QQDDRLQPLL-------- 123
+G + + R I +D + L
Sbjct: 65 DGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEE 124
Query: 124 --TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
I+ +++ +GL + ++ ++ LS GQK+ L I + L +P+++ LDEP
Sbjct: 125 RRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPV 175
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 63.0 bits (153), Expect = 9e-11
Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 27/150 (18%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH---SRNINA 105
K V+ +L + ++GP+GAGKS++ +L G S G+I G SR A
Sbjct: 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR-GKITVLGEPVPSRARLA 75
Query: 106 FRRVSCYIQQDDRLQPLLTI-ENVM------------------SLLG---LDESQNTRSS 143
+ + Q D L P T+ EN++ SLL L+ + R +
Sbjct: 76 RVAIGV-VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVA 134
Query: 144 QLSGGQKKRLSIALELINNPRVMFLDEPTT 173
LSGG K+RL++A LIN+P+++ LDEPTT
Sbjct: 135 LLSGGMKRRLTLARALINDPQLLILDEPTT 164
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 61.4 bits (150), Expect = 1e-10
Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 56/204 (27%)
Query: 54 NLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINA----FRRV 109
L + +L+ I GP+GAGK+SLL +L+G + G++L G I + +
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGL-ARPDAGEVLWQG--EPIRRQRDEYHQD 75
Query: 110 SCYIQQDDRLQPLLT-IENVMSLLGLDESQNTRS------------------SQLSGGQK 150
Y+ ++ LT +EN+ L + + QLS GQ+
Sbjct: 76 LLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQ 135
Query: 151 KRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSC 210
+R+++A RL + + LDEP T +D Q
Sbjct: 136 RRVALA-------------------------RL-----WLTRAPLWILDEPFTAIDKQGV 165
Query: 211 SQCIKLLKMISQQGRTIICTIHQP 234
++ LL ++QG +I T HQ
Sbjct: 166 ARLEALLAQHAEQGGMVILTTHQD 189
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 61.7 bits (151), Expect = 1e-10
Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 70/245 (28%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH-----SRNI 103
+ +L ++ +++AI+GP+GAGKS+LL LSG S +G++ NG S
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD-SGEVRLNGRPLADWSPAE 73
Query: 104 NAFRR-------------------------VSCYIQQDDRLQPLLTIENVMSLLGLDESQ 138
A RR +DD L + ++ + L
Sbjct: 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDAL-----VAAALAQVDLAHLA 128
Query: 139 NTRSSQLSGGQKKRLSIALELINNPRVM---FLDEPTTSNPNDQKKRLSIALELINNPRV 195
QLSGG+++R+ +A RV+ + + PR
Sbjct: 129 GRDYPQLSGGEQQRVQLA-------RVLAQLWEPDGP--------------------PRW 161
Query: 196 MFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTIICTIHQPS-ATLFQMFDQVYLLSGGQC 253
+ LDEPT+ LD ++L + + ++G +I +H + A + D++ LL G+
Sbjct: 162 LLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYA--DRIVLLHQGRL 219
Query: 254 LYQGA 258
+ G
Sbjct: 220 VADGT 224
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 61.4 bits (150), Expect = 1e-10
Identities = 49/233 (21%), Positives = 104/233 (44%), Gaps = 62/233 (26%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNG--------HSR---------- 101
S +++ ++GP+GAGK++ ++ G R + G+IL + H R
Sbjct: 29 SGEIVGLLGPNGAGKTTTFYMIVGLVRPDS--GKILLDDEDITKLPMHKRARLGIGYLPQ 86
Query: 102 NINAFRRVSCY--------IQQDDR--LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK 151
+ FR+++ I++ D + ++ ++ + +++++ LSGG+++
Sbjct: 87 EASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERR 146
Query: 152 RLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCS 211
R+ IA R L NP+ + LDEP G+D +
Sbjct: 147 RVEIA-------RA-----------------------LAANPKFILLDEPFAGVDPIAVI 176
Query: 212 QCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
+++K + +G ++ T H TL + D+ Y++S G+ L +G+ +++VN
Sbjct: 177 DIQRIIKHLKDRGIGVLITDHNVRETL-DICDRAYIISDGKVLAEGSPEEIVN 228
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 62.5 bits (153), Expect = 2e-10
Identities = 64/267 (23%), Positives = 112/267 (41%), Gaps = 79/267 (29%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDV--LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86
I+ K+++ F Q + + L N+ P+ ++ ++G SGAGKS+L+ ++
Sbjct: 2 IELKNISKV------FPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE 55
Query: 87 --SNG---VTGQILTNGHSRNINAFRRVSCYIQQ-------------------------- 115
++G V GQ LT + + RR I Q
Sbjct: 56 RPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKA 115
Query: 116 --DDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
R+ LL L+GL + + +QLSGGQK+R++IA L +NP+V+
Sbjct: 116 EIKARVTELL------ELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVL------- 162
Query: 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIH 232
L DE T+ LD + ++LLK I+++ G TI+ H
Sbjct: 163 ---------LC--------------DEATSALDPATTRSILELLKDINRELGLTIVLITH 199
Query: 233 QPSATLFQMFDQVYLLSGGQCLYQGAT 259
+ + ++ D+V ++ G+ + QG
Sbjct: 200 E-MDVVKRICDRVAVIDAGRLVEQGTV 225
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 62.1 bits (151), Expect = 2e-10
Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 26/146 (17%)
Query: 67 IMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSCYIQQDDRLQPLLTI 125
++GPSG GK++LL +L+G+ +G I+ +G N+ R + Q L P +T+
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD-SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTV 59
Query: 126 -ENV---------------------MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP 163
ENV + L+ L+E + + QLSGGQ++R+++A L+ P
Sbjct: 60 EENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKP 119
Query: 164 RVMFLDEPTTSNPNDQKKRLSIALEL 189
+++ LDEP ++ D+K R + LEL
Sbjct: 120 KILLLDEPLSA--LDKKLRDQMQLEL 143
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 62.5 bits (152), Expect = 2e-10
Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 26/152 (17%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSCYIQQDDRLQP 121
++ A++G SG GKS+LL +L+G+ GQI+ +G ++ ++R + Q L P
Sbjct: 46 EIFALLGASGCGKSTLLRMLAGFEQP-TAGQIMLDGVDLSHVPPYQRPINMMFQSYALFP 104
Query: 122 LLTIEN----------------------VMSLLGLDESQNTRSSQLSGGQKKRLSIALEL 159
+T+E ++ L+ + E + QLSGGQ++R+++A L
Sbjct: 105 HMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSL 164
Query: 160 INNPRVMFLDEPTTSNPNDQKKRLSIALELIN 191
P+++ LDEP + D+K R + LE+++
Sbjct: 165 AKRPKLLLLDEPMGA--LDKKLRDRMQLEVVD 194
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 59.1 bits (144), Expect = 2e-10
Identities = 56/222 (25%), Positives = 94/222 (42%), Gaps = 60/222 (27%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+ ++L+ G + +LK+L + I GPSG GKSSL L+G
Sbjct: 1 IELENLSLATPDG-------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW 53
Query: 89 GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG 148
G +G+I G + ++ Q +P L + + L LSGG
Sbjct: 54 G-SGRI---GMPEGEDLL-----FLPQ----RPYLPLGTLREQLIY-----PWDDVLSGG 95
Query: 149 QKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQ 208
+++RL+ A RL L++ P+ +FLDE T+ LD +
Sbjct: 96 EQQRLAFA-------------------------RL-----LLHKPKFVFLDEATSALDEE 125
Query: 209 SCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG 250
S + L +++ + G T+I H+P +L++ D+V L G
Sbjct: 126 SEDR---LYQLLKELGITVISVGHRP--SLWKFHDRVLDLDG 162
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 62.0 bits (151), Expect = 2e-10
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 36/152 (23%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG------HSRNIN 104
VL ++ PS Q++A++GPSG+GK++LL +++G +G I +G H+R+
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT-SGHIRFHGTDVSRLHARD-- 73
Query: 105 AFRRVSCYIQQDDRLQPLLTIEN----------------------VMSLLG---LDESQN 139
R+V Q + + +N V LL L +
Sbjct: 74 --RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD 131
Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
+QLSGGQK+R+++A L P+++ LDEP
Sbjct: 132 RYPAQLSGGQKQRVALARALAVEPQILLLDEP 163
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 59.9 bits (145), Expect = 3e-10
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 22/151 (14%)
Query: 41 GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS 100
L F + + V L + + + + G +GAGK++LL VL+G +GQI +G +
Sbjct: 16 ALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE-SGQIQIDGKT 74
Query: 101 RNINAFR-RVSCYIQQDDRLQP-LLTIENV------------------MSLLGLDESQNT 140
R R Y+ L+ L T+EN+ ++++GL ++T
Sbjct: 75 -ATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDT 133
Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
QLS GQKKRL++A ++ + LDEP
Sbjct: 134 LVRQLSAGQKKRLALARLWLSPAPLWLLDEP 164
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 62.3 bits (152), Expect = 3e-10
Identities = 58/280 (20%), Positives = 114/280 (40%), Gaps = 74/280 (26%)
Query: 14 SSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGA 73
+ T + ++ +++++T + + LKN + +AI+G SG+
Sbjct: 323 VTFPDEQTATTGQA-LELRNVSFT------YPGQQTKALKNFNLTLAQGEKVAILGRSGS 375
Query: 74 GKSSLLDVLSGYRSNGVTGQILTNGHS-RNIN--AFRRVSCYIQQD---------DRLQ- 120
GKS+LL +L+G + G I NG +++ A R + Q D L+
Sbjct: 376 GKSTLLQLLAGA-WDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRL 434
Query: 121 --PLLTIENVMS----------LLGLDESQNTRSS----QLSGGQKKRLSIALELINNPR 164
P + E + + L + NT +LSGG+++RL++A R
Sbjct: 435 ANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALA-------R 487
Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ-- 222
L+++ + LDEPT GLD + Q +L ++ +
Sbjct: 488 A-----------------------LLHDAPLWLLDEPTEGLDPITERQ---VLALLFEHA 521
Query: 223 QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
+G+T++ H+ + D++ +L G+ + +G +L
Sbjct: 522 EGKTLLMVTHR--LRGLERMDRIIVLDNGKIIEEGTHAEL 559
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 60.4 bits (147), Expect = 4e-10
Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 45/182 (24%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I + T T G K L L + ++G +GAGKS+LL+ ++G
Sbjct: 2 ISLSNATKTFFKGTP---LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP 58
Query: 89 GVTGQILTNGHSRNINAF------RRVSCYIQQD--DRLQPLLTIENVMSL--------- 131
+GQIL +G ++ ++ + QD P LTIE ++L
Sbjct: 59 -TSGQILIDG--VDVTKKSVAKRANLLA-RVFQDPLAGTAPELTIEENLALAESRGKKRG 114
Query: 132 ---------------------LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
LGL+ + R LSGGQ++ LS+ + ++ P+++ LDE
Sbjct: 115 LSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE 174
Query: 171 PT 172
T
Sbjct: 175 HT 176
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 59.9 bits (145), Expect = 4e-10
Identities = 54/237 (22%), Positives = 88/237 (37%), Gaps = 77/237 (32%)
Query: 63 QLIAIMGPSGAGKSSLL------------DVLSGYRSNGVTG------------------ 92
+L+ ++GP+GAGK++LL V S G
Sbjct: 7 ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPI 66
Query: 93 ---QILTNGHSRNINAFRR--VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSG 147
+ +G + +I RR V+ + D L+ + GL E + +LSG
Sbjct: 67 SVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRV----------GLTELADRPVGELSG 116
Query: 148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207
GQ++R+ +A L A P V+ LDEP TGLD
Sbjct: 117 GQRQRVLVARAL--------------------------ATR----PSVLLLDEPFTGLDM 146
Query: 208 QSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
+ +L ++ G I+ T H + + D+V LL+ G+ + G QL +
Sbjct: 147 PTQELLTELFIELAGAGTAILMTTHDLAQAM-ATCDRVVLLN-GRVIADGTPQQLQD 201
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 62.2 bits (151), Expect = 4e-10
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 37/200 (18%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
++F+ +T+ F + V ++ + Q +AI+GP+GAGK++L+++L
Sbjct: 334 AVEFRHITF------EFANSSQGV-FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD 386
Query: 88 NGVTGQILTNG---HSRNINAFRRVSCYIQQDDRL------------QPLLTIENVMS-- 130
V GQIL +G ++ + R+ + QD L + T E V
Sbjct: 387 PTV-GQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAA 445
Query: 131 ------------LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
G D R ++LSGG+++RL+IA ++ N ++ LDE T++ +
Sbjct: 446 KAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVE 505
Query: 179 QKKRLSIALELINNPRVMFL 198
+ R+ A++ + R F+
Sbjct: 506 TEARVKNAIDALRKNRTTFI 525
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 60.2 bits (146), Expect = 4e-10
Identities = 55/205 (26%), Positives = 87/205 (42%), Gaps = 41/205 (20%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGHSR 101
K L ++ P N++ A++GPSG GKS+LL D++ G R +TG IL NG +
Sbjct: 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR---ITGDILYNGENI 75
Query: 102 NIN-----AFRRVSCYIQQDDRLQPLLTIENVM---SLLGLDES--------QNTRSSQL 145
+ A RR + Q P ENV + G ++ + + L
Sbjct: 76 MDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAAL 135
Query: 146 SGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205
K R L + S Q++RL IA L NP V+ +DEP + L
Sbjct: 136 WDEVKDR---------------LHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSAL 180
Query: 206 DSQSCSQCIKLLKMISQQGRTIICT 230
D + ++ L++ + ++ II T
Sbjct: 181 DPIATAKIEDLIEDLKKEYTVIIVT 205
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 61.2 bits (149), Expect = 4e-10
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 30/136 (22%)
Query: 62 NQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTNGHSRNINAF---RRVSCYIQQDD 117
+ + ++GPSG GK++LL +++G R G I G R+I +R + Q
Sbjct: 30 GEFVCLLGPSGCGKTTLLRIIAGLERQT--AGTIYQGG--RDITRLPPQKRDYGIVFQSY 85
Query: 118 RLQPLLTIE-NV---------------------MSLLGLDESQNTRSSQLSGGQKKRLSI 155
L P LT+ N+ + L+GL S+ QLSGGQ++R+++
Sbjct: 86 ALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVAL 145
Query: 156 ALELINNPRVMFLDEP 171
A L +P ++ LDEP
Sbjct: 146 ARALATSPGLLLLDEP 161
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 61.4 bits (150), Expect = 4e-10
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 26/139 (18%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH-----SRNIN---AFRRVSC 111
P+ + AI G SGAGK+SL++ +SG + G+I+ NG + I RR+
Sbjct: 22 PAQGITAIFGRSGAGKTSLINAISGL-TRPQKGRIVLNGRVLFDAEKGICLPPEKRRIG- 79
Query: 112 YIQQDDRLQPLLTIE----------------NVMSLLGLDESQNTRSSQLSGGQKKRLSI 155
Y+ QD RL P + +++LLG++ + LSGG+K+R++I
Sbjct: 80 YVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAI 139
Query: 156 ALELINNPRVMFLDEPTTS 174
L+ P ++ +DEP S
Sbjct: 140 GRALLTAPELLLMDEPLAS 158
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 59.2 bits (144), Expect = 5e-10
Identities = 52/222 (23%), Positives = 106/222 (47%), Gaps = 35/222 (15%)
Query: 48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAF 106
L ++ ++ ++GP+GAGK++ + ++ G + +G++L +G +I A
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD--SGEVLFDGKPLDIAAR 69
Query: 107 RRVSCYIQQDDRLQPLLTIENVM----SLLGLDESQNTRSS-------QLSGGQKKRLSI 155
R+ Y+ ++ L P + + + + L GL + + R +LS KR+
Sbjct: 70 NRIG-YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVE- 127
Query: 156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK 215
EL S N QK + A+ I++P ++ LDEP +GLD +
Sbjct: 128 --EL--------------SKGNQQKVQFIAAV--IHDPELLILDEPFSGLDPVNVELLKD 169
Query: 216 LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
+++ +++ G+T+I + HQ + ++ D+V LL+ G+ + G
Sbjct: 170 VIRELARAGKTVILSTHQ-MELVEELCDRVLLLNKGRAVLYG 210
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 59.5 bits (144), Expect = 5e-10
Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 33/185 (17%)
Query: 42 LGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR 101
+G+ +L N+ + + IAI GPSG GKS+LL +++ S +G +L G
Sbjct: 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP-TSGTLLFEGEDV 67
Query: 102 N---INAFRRVSCYIQQDDRLQPLL---TIENVMSL--------------------LGLD 135
+ A+R+ Y Q P L T+E+ + L
Sbjct: 68 STLKPEAYRQQVSYCAQ----TPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP 123
Query: 136 ESQ-NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS-NPNDQKKRLSIALELINNP 193
+S ++LSGG+K+R+++ L P+++ LDE T++ + ++++ + +
Sbjct: 124 DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQ 183
Query: 194 RVMFL 198
V L
Sbjct: 184 NVAVL 188
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 61.0 bits (148), Expect = 5e-10
Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 78/269 (28%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--------------YRSNGVTGQILT 96
L N+ F N++ I+G SG+GKS+L+ +G Y + L
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 97 NGH-SRNINAF----RRVSCY------------IQQDDRLQPL-LTIENV---------M 129
S+ I F RRVS I++D P+ L ++ +
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYL 160
Query: 130 SLLGLDESQNTRSS-QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE 188
+ +GLD+S RS LSGGQK+R++IA L A++
Sbjct: 161 NKMGLDDSYLERSPFGLSGGQKRRVAIAGIL--------------------------AIQ 194
Query: 189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248
P ++ DEPT GLD + + ++L+ +T+ H L ++ D+V ++
Sbjct: 195 ----PEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVL-EVADEVIVM 249
Query: 249 SGGQCL-----YQGATDQLVNYLSSVNLP 272
G+ L Y+ TDQ + +S+ +P
Sbjct: 250 DKGKILKTGTPYEIFTDQHIINSTSIQVP 278
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 59.7 bits (145), Expect = 5e-10
Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 33/202 (16%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQI----------LTNGH 99
VLKN+ + + +A+ GPSGAGKS+LL L Y + +G+I L
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD--SGRILVRHEGAWVDLAQAS 80
Query: 100 SRNINAFRRVSC-YIQQDDRLQP-LLTIENVM-SLLGL----DESQNTRSSQLSGGQKKR 152
R + RR + Y+ Q R+ P + +E V LL + ++ L+ R
Sbjct: 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLA-----R 135
Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
L+I L + P P T + +Q+ R++IA I + ++ LDEPT LD+ +
Sbjct: 136 LNIPERLWHLP-------PATFSGGEQQ-RVNIARGFIADYPILLLDEPTASLDAANRQV 187
Query: 213 CIKLLKMISQQGRTIICTIHQP 234
++L+ +G +I H
Sbjct: 188 VVELIAEAKARGAALIGIFHDE 209
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 60.0 bits (146), Expect = 6e-10
Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 47/166 (28%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGHSR 101
K L ++ R P N++ A +GPSG GKS+LL D++ R + G+I +G
Sbjct: 38 KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR---IEGEIRLDGQ-- 92
Query: 102 NINA--------FRRVSCYIQQDDRLQPLLTIENV---MSLLG------LDES--QNTRS 142
NI RRV Q+ + P ENV + L G LDE+ ++ R
Sbjct: 93 NIYDKKVDVAELRRRVGMVFQRPNPF-PKSIYENVVYGLRLQGINNRRVLDEAVERSLRG 151
Query: 143 SQ---------------LSGGQKKRLSIALELINNPRVMFLDEPTT 173
+ LSGGQ++RL IA + P V+ LDEPT+
Sbjct: 152 AALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTS 197
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 60.8 bits (148), Expect = 6e-10
Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 37/144 (25%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRS--------NGVTGQILTNGHSRNINAFRRVSC 111
S +L+A++GPSGAGKS+LL +++G + NG ++N R+ R+V
Sbjct: 26 KSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD----RKVG- 80
Query: 112 YIQQDDRLQPLLTI-ENV-----------------------MSLLGLDESQNTRSSQLSG 147
++ Q L P +T+ +N+ + L+ L+ + +QLSG
Sbjct: 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSG 140
Query: 148 GQKKRLSIALELINNPRVMFLDEP 171
GQ++R+++A L P+V+ LDEP
Sbjct: 141 GQRQRVALARALAVEPKVLLLDEP 164
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 58.6 bits (143), Expect = 7e-10
Identities = 66/257 (25%), Positives = 103/257 (40%), Gaps = 86/257 (33%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--YR 86
I +D ++T +G +QE LK++ P +L+AI+GP G+GKSSLL L G +
Sbjct: 1 ISVEDASFTWDSG---EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK 57
Query: 87 SNG---VTGQI--------LTNGHSR-NI------NA--FRRV--SCYIQQDDRLQPLLT 124
+G V G I + NG R NI + + +V +C ++ D
Sbjct: 58 LSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPD-------- 109
Query: 125 IENVMSLLGLDESQNT----RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK 180
+E L + T + LSGGQK+R+S+A + ++ + LD+P
Sbjct: 110 LEI------LPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP--------- 154
Query: 181 KRLSIALELINNPRVMFLDEPTTGLDSQS----CSQCI-KLLKMISQQGRTIICTIHQPS 235
LS +D+ CI LL +T I HQ
Sbjct: 155 --LS-------------------AVDAHVGRHIFENCILGLLL----NNKTRILVTHQLQ 189
Query: 236 ATLFQMFDQVYLLSGGQ 252
L DQ+ +L G+
Sbjct: 190 --LLPHADQIVVLDNGR 204
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 61.7 bits (150), Expect = 8e-10
Identities = 64/262 (24%), Positives = 119/262 (45%), Gaps = 36/262 (13%)
Query: 13 SSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSG 72
+ +GT I+F+D++++ + VLK L +++A++GPSG
Sbjct: 463 NIPLTGTLAPLNLEGLIEFQDVSFSYPN-----RPDVPVLKGLTFTLHPGEVVALVGPSG 517
Query: 73 AGKSSLLDVLSG-YRSNGVTGQILTNGHS-RNINAFRRVSCYIQQDDRL---QPLL---- 123
+GKS++ +L Y+ G GQ+L +G + Y+ + L +P+L
Sbjct: 518 SGKSTVAALLQNLYQPTG--GQVLLDGVPLVQYD-----HHYLHRQVALVGQEPVLFSGS 570
Query: 124 TIENVMSLLGLD---ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK 180
EN+ GL + + +++ + +E N + E + QK
Sbjct: 571 VRENI--AYGLTDTPDEEIMAAAKAANAH----DFIMEFPNGYDTE-VGEKGSQLSGGQK 623
Query: 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ 240
+R++IA L+ PRV+ LDE T+ LD++ C Q ++ + S+ RT++ H+ S +
Sbjct: 624 QRIAIARALVRKPRVLILDEATSALDAE-CEQLLQESR--SRASRTVLLIAHRLS--TVE 678
Query: 241 MFDQVYLLSGGQCLYQGATDQL 262
DQ+ +L G + G QL
Sbjct: 679 RADQILVLKKGSVVEMGTHKQL 700
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 59.0 bits (143), Expect = 8e-10
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 21/141 (14%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR---SNGVT---GQILTNGHSRNI-- 103
LK + + I+++G SG GKS+LL+++SG S GV QI G R +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 104 -------------NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK 150
N V + + + +E ++L+GL E+ + R QLSGG K
Sbjct: 61 QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMK 120
Query: 151 KRLSIALELINNPRVMFLDEP 171
+R++IA L P+V+ LDEP
Sbjct: 121 QRVAIARALSIRPKVLLLDEP 141
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 58.8 bits (143), Expect = 8e-10
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 30/170 (17%)
Query: 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN-- 104
L +L + + ++GPSG GK++ L +++G +G+I G R++
Sbjct: 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT-SGRIYIGG--RDVTDL 67
Query: 105 -AFRRVSCYIQQDDRLQPLLTI-EN---------------------VMSLLGLDESQNTR 141
R + Q+ L P +T+ +N V LL ++ + +
Sbjct: 68 PPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRK 127
Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELIN 191
QLSGGQ++R+++ ++ P+V +DEP SN D K R+ + EL
Sbjct: 128 PKQLSGGQRQRVALGRAIVREPKVFLMDEP-LSNL-DAKLRVQMRAELKR 175
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 58.3 bits (142), Expect = 8e-10
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 22/148 (14%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
++ KDL +V K++LK + ++ A+MGP+G+GKS+L + G+
Sbjct: 1 LEIKDLHVSV--------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKY 52
Query: 89 GVT-GQILTNGHS-RNINAFRRVSCYI---QQDDRLQPLLTIENVMSLLGLDESQNTRSS 143
VT G+IL G ++ R I Q P + + L ++E
Sbjct: 53 EVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADF--LRYVNEG------ 104
Query: 144 QLSGGQKKRLSIALELINNPRVMFLDEP 171
SGG+KKR I L+ P + LDEP
Sbjct: 105 -FSGGEKKRNEILQLLLLEPDLAILDEP 131
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 59.8 bits (145), Expect = 9e-10
Identities = 60/283 (21%), Positives = 118/283 (41%), Gaps = 75/283 (26%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+F +++YT G ++ + + ++ F + AI+G +G+GKS+L+ ++
Sbjct: 3 IRFDNVSYTYQKGTPYEHQ---AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP 59
Query: 89 GVTGQILTNG----------HSRNINAFRRVSCYIQ-------QDDRLQPLL-------- 123
TG + + + R + +R+ Q +D + ++
Sbjct: 60 -TTGTVTVDDITITHKTKDKYIRPVR--KRIGMVFQFPESQLFEDTVEREIIFGPKNFKM 116
Query: 124 TIENVMS-----LLGLDESQNTRSS---QLSGGQKKRLSIALELINNPRVMFLDEPTTSN 175
++ V + L+ L S++ S Q+SGGQ ++++I
Sbjct: 117 NLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAI-------------------- 156
Query: 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS-QQGRTIICTIHQP 234
+SI L NP ++ LDEPT GLD QS Q ++LLK + + +TII H
Sbjct: 157 -------VSI---LAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM 206
Query: 235 SATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYH 277
+ + + D+V ++ G + Q + +L + +H
Sbjct: 207 N-EVARYADEVIVMKEGSIVSQTSPKELFKDKKKLA----DWH 244
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 59.1 bits (143), Expect = 1e-09
Identities = 54/178 (30%), Positives = 81/178 (45%), Gaps = 40/178 (22%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLD----VLSGYRSNGVTGQILTNG---HSRNI 103
V+K + + P N + A+MGPSG GKS+LL +L V G++ G +S ++
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 104 NAF---RRVSCYIQQDDRLQPLLTI-ENV---MSLLGLDESQ------------------ 138
+ R V Q + P LTI +NV + L GL +S+
Sbjct: 79 DPIEVRREVGMVFQYPNPF-PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWD 137
Query: 139 ------NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS-NPNDQKKRLSIALEL 189
N S LSGGQ++RL IA L P+++ +DEPT + +P K + EL
Sbjct: 138 EVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL 195
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 60.2 bits (147), Expect = 2e-09
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 35/141 (24%)
Query: 66 AIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNG---HSRNINAFRR--VSCYIQQDDRL 119
A++G +GAGKS+L+ +LSG Y + G+IL +G + ++ + Q+ L
Sbjct: 38 ALLGENGAGKSTLMKILSGVYPPDS--GEILIDGKPVAFSSPRDALAAGIAT-VHQELSL 94
Query: 120 QPLLTI-EN-------------------------VMSLLGLDESQNTRSSQLSGGQKKRL 153
P L++ EN +++ LGLD +T LS Q++ +
Sbjct: 95 VPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMV 154
Query: 154 SIALELINNPRVMFLDEPTTS 174
IA L + RV+ LDEPT +
Sbjct: 155 EIARALSFDARVLILDEPTAA 175
Score = 45.2 bits (108), Expect = 8e-05
Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 22/170 (12%)
Query: 72 GAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN----AFRRVSCYIQQDDRLQ---PLLT 124
GAG++ L L G R +G+IL +G I A + Y+ +D + + ++
Sbjct: 295 GAGRTELARALFGARPA-SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353
Query: 125 IENVMSLLGLDES------QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
I ++L L + L+ +RL I P + L S N
Sbjct: 354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-IGTL-----SGGNQ 407
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
QK + +A L +P+V+ LDEPT G+D + ++ +L++ ++ +G+ I+
Sbjct: 408 QK--VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAIL 455
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 58.4 bits (141), Expect = 2e-09
Identities = 60/208 (28%), Positives = 91/208 (43%), Gaps = 35/208 (16%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG------VTGQILTNGH--- 99
+ LK + F N++ A++GPSG GKS+ L L+ R N +TG + G
Sbjct: 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLN--RMNDLIPGVTITGNVSLRGQNIY 75
Query: 100 ---SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKR-LSI 155
+ ++V QQ + P ENV + GL +L+G + K L
Sbjct: 76 APNEDVVQLRKQVGMVFQQPNPF-PFSIYENV--IYGL---------RLAGVKDKAVLDE 123
Query: 156 ALELINNPRVMF------LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQS 209
A+E ++ L E S Q++R+ IA L P V+ LDEPT+ LD S
Sbjct: 124 AVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPIS 183
Query: 210 CSQCIKLLKMISQQGRTIICT--IHQPS 235
+Q +L + Q I+ T +HQ S
Sbjct: 184 STQIENMLLELRDQYTIILVTHSMHQAS 211
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 58.6 bits (141), Expect = 2e-09
Identities = 67/263 (25%), Positives = 115/263 (43%), Gaps = 21/263 (7%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--- 85
IKF+ + YT F L ++ A++G +G+GKS+LL L+G
Sbjct: 2 IKFEKVNYTYQPNSPFASR---ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP 58
Query: 86 -RSNGVTGQILTNGHSRN--INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRS 142
G I+ + S+ I R+ + Q Q L E V+ D + ++
Sbjct: 59 TEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ--LFEETVLK----DVAFGPQN 112
Query: 143 SQLSGGQKKRLSI-ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201
+ + ++++ LE++ + P + Q +R++IA L P V+ LDEP
Sbjct: 113 FGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELS-GGQMRRVAIAGILAMEPEVLVLDEP 171
Query: 202 TTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD- 260
T GLD ++ + ++L + I Q G+T++ H + D VYLL G + G
Sbjct: 172 TAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTPSD 230
Query: 261 --QLVNYLSSVNLPCPKYHNPAD 281
Q V++L + L PK + AD
Sbjct: 231 VFQEVDFLKAHELGVPKATHFAD 253
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 58.3 bits (141), Expect = 2e-09
Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 31/213 (14%)
Query: 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH-----SRNINAFRRVSCYI 113
P L ++GP+G+GKS+LL +L+G G + G SR A RRV+ +
Sbjct: 24 APPGSLTGLLGPNGSGKSTLLRLLAGALR-PDAGTVDLAGVDLHGLSRRARA-RRVAL-V 80
Query: 114 QQDDRLQPLLTIENVM--------SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV 165
+QD LT+ +V+ SL D S R EL +
Sbjct: 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGD-------SPHDAAVVDRALARTELSH---- 129
Query: 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
D ++ +++R+ +A L P+++ LDEPT LD ++ + + L++ ++ G
Sbjct: 130 -LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV 188
Query: 226 TIICTIHQPSATLFQMF-DQVYLLSGGQCLYQG 257
T++ +H L + D V +L GG+ + G
Sbjct: 189 TVVAALH--DLNLAASYCDHVVVLDGGRVVAAG 219
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 58.4 bits (142), Expect = 2e-09
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 34/179 (18%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCG---RFPSNQLIAIMGPSGAGKSSLLDVLSGY 85
++ K+L G GF K +K + G + + ++G SG GKS+L ++ G
Sbjct: 5 LEVKNLKKYFPVGKGFG--KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL 62
Query: 86 RSNGVT-GQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQ-NTRSS 143
T G+IL G ++I + ++R + + ++ +GL E
Sbjct: 63 --EEPTSGEILFEG--KDITKLSK-------EERRE---RVLELLEKVGLPEEFLYRYPH 108
Query: 144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSN---------PN---DQKKRLSIALELI 190
+LSGGQ++R+ IA L NP+++ DEP S N D ++ L + I
Sbjct: 109 ELSGGQRQRIGIARALALNPKLIVADEP-VSALDVSVQAQILNLLKDLQEELGLTYLFI 166
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 55.9 bits (136), Expect = 3e-09
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 39/145 (26%)
Query: 52 LKNLCGRFPSNQ-------------LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG 98
L+ + RF + + A++G +GAGKS+L+ +LSG +G+IL +G
Sbjct: 3 LRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDG 61
Query: 99 HSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE 158
+ + R D + I V QLS G+++ + IA
Sbjct: 62 KEVSFASPR---------DARR--AGIAMVY--------------QLSVGERQMVEIARA 96
Query: 159 LINNPRVMFLDEPTTSNPNDQKKRL 183
L N R++ LDEPT + + +RL
Sbjct: 97 LARNARLLILDEPTAALTPAEVERL 121
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 58.2 bits (141), Expect = 3e-09
Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 38/179 (21%)
Query: 129 MSLLGLDESQNTRSS-QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL 187
+ L+GLDES RS +LSGGQK+R+++A L A+
Sbjct: 149 IELVGLDESYLQRSPFELSGGQKRRVALAGIL--------------------------AM 182
Query: 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYL 247
E P + DEPT GLD Q + +++ +++QG+TII H L + +
Sbjct: 183 E----PDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVL-EWTKRTIF 237
Query: 248 LSGGQCLYQGATDQLVN---YLSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVEQA 303
G+ + G T +++ +L N+ PK N FV +L V + ++ E A
Sbjct: 238 FKDGKIIKDGDTYDILSDNKFLIENNMEPPKLLN---FVNKLEKKGIDVPKVTSIEELA 293
Score = 30.8 bits (70), Expect = 2.1
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 27 IEIKFKDLTYTVSTGLG--FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG 84
++IK K++ + L K L N+ + IAI+G +G+GK++ ++ L+
Sbjct: 1 MQIKVKNIVKIFNKKLPTELK-----ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNA 55
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 57.1 bits (138), Expect = 3e-09
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 30/139 (21%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSC------YIQQ 115
+ IA++G SG+GKS+LL +L+G +G +G++ G ++ R ++ Q
Sbjct: 37 ETIALIGESGSGKSTLLAILAGL-DDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQ 95
Query: 116 DDRLQPLL-TIENV---------------------MSLLGLDESQNTRSSQLSGGQKKRL 153
L P L +ENV + LGL + + +QLSGG+++R+
Sbjct: 96 SFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRV 155
Query: 154 SIALELINNPRVMFLDEPT 172
++A P V+F DEPT
Sbjct: 156 ALARAFNGRPDVLFADEPT 174
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 57.2 bits (138), Expect = 4e-09
Identities = 49/225 (21%), Positives = 104/225 (46%), Gaps = 23/225 (10%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--------HS 100
+ V++++ S +++ ++GP+GAGK++ ++ G G I+ + H+
Sbjct: 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD-AGNIIIDDEDISLLPLHA 74
Query: 101 RNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELI 160
R A R + Q+ + L +N+M++L + + + ++R A EL+
Sbjct: 75 R---ARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLS---------AEQREDRANELM 122
Query: 161 NNPRVMFL-DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKM 219
+ L D S +++R+ IA L NP+ + LDEP G+D S ++++
Sbjct: 123 EEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEH 182
Query: 220 ISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
+ G ++ T H TL + ++ Y++S G + G +++
Sbjct: 183 LRDSGLGVLITDHNVRETL-AVCERAYIVSQGHLIAHGTPTEILQ 226
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 58.7 bits (142), Expect = 4e-09
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 13/200 (6%)
Query: 64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG---HSRNINAFRRVSCYIQQDDRLQ 120
L+ ++GP+GAGK++LL ++G + G +L G + + A R + QD L
Sbjct: 31 LVGLVGPNGAGKTTLLRAINGTLTPT-AGTVLVAGDDVEALSARAASRRVASVPQDTSLS 89
Query: 121 PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-MFLDEPTTSNPNDQ 179
+ V+ + + S+ + + + V F D P TS +
Sbjct: 90 FEFDVRQVVEM-----GRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGE 144
Query: 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLF 239
++R+ +A L V+ LDEPT LD + ++L++ + G+T + IH L
Sbjct: 145 RQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIH--DLDLA 202
Query: 240 QMF-DQVYLLSGGQCLYQGA 258
+ D++ LL+ G+ G
Sbjct: 203 ARYCDELVLLADGRVRAAGP 222
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 57.3 bits (138), Expect = 4e-09
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 16/190 (8%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR----SNGVTGQILTNG---HSRNIN 104
+K++ FP N + AI+GPSG GKS++L ++ S VTG+IL + + R ++
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 105 AF---RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN-TRSSQLSGGQKKRLSIALELI 160
RRV Q+ + + +NV++ L+ N + + ++ KR+++ E+
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK 139
Query: 161 NNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMI 220
+ L Q++RL IA + P V+ +DEP + LD S + +L++ +
Sbjct: 140 DR-----LKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL 194
Query: 221 SQQGRTIICT 230
++ II T
Sbjct: 195 KEKYTIIIVT 204
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 57.5 bits (139), Expect = 4e-09
Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 26/248 (10%)
Query: 29 IKFKDLTYTVSTGLGF-KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
++ +D+T+T TG F ++ VL N+ + + ++G SG GKS+L +L G
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 88 NG-----VTGQILTNGHSRNINAFRRVSCYIQQD--DRLQPLLTIENVMS-----LLGLD 135
GQ L + AFRR + QD + P +T+ ++ L LD
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLD 122
Query: 136 ESQNTRSSQLSGGQKKRLSIALELIN-NPRVMFLDEPTTSNPNDQKKRLSIALELINNPR 194
ES+ QK R++ L+++ S Q +R++IA L P+
Sbjct: 123 ESE----------QKARIAELLDMVGLRSEDADKLPRQLSG--GQLQRINIARALAVKPK 170
Query: 195 VMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCL 254
++ LDE + LD + ++LL+ + Q T I + +V ++ GQ +
Sbjct: 171 LIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230
Query: 255 YQGATDQL 262
+ QL
Sbjct: 231 EECDVAQL 238
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 56.5 bits (137), Expect = 4e-09
Identities = 43/216 (19%), Positives = 75/216 (34%), Gaps = 73/216 (33%)
Query: 64 LIAIMGPSGAGKSSLLD----VLSG---------------YRSNGVTGQI-----LTNGH 99
L I+G +GAGK+++++ L+G R V Q+ NG
Sbjct: 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGK 83
Query: 100 ----SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSI 155
+R++ V + Q + PLL + SGG+K S+
Sbjct: 84 KYTITRSLAILENV-IFCHQGESNWPLL--------DMRG--------RCSGGEKVLASL 126
Query: 156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCS-QCI 214
+ RL++A +N ++ LDEPTT LD ++
Sbjct: 127 II------------------------RLALAETFGSNCGILALDEPTTNLDEENIEESLA 162
Query: 215 KLLKMISQQG-RTIICTIHQPSATLFQMFDQVYLLS 249
++++ Q +I H L D +Y +
Sbjct: 163 EIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVE 196
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 56.7 bits (138), Expect = 4e-09
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 51/183 (27%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR- 86
+I+FK+++ L ++ VLKN+ + + I+G +G+GKSSLL L +R
Sbjct: 2 DIEFKNVS------LRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLAL--FRL 53
Query: 87 SNGVTGQILTNGHSRNINAF------RRVSCYIQQDDRLQPLL---TI-EN--------- 127
+G IL +G +I+ R+S I QD P+L TI N
Sbjct: 54 VELSSGSILIDGV--DISKIGLHDLRSRISI-IPQD----PVLFSGTIRSNLDPFGEYSD 106
Query: 128 ---------------VMSLL-GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
V SL GLD LS GQ++ L +A L+ +++ LDE
Sbjct: 107 EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEA 166
Query: 172 TTS 174
T S
Sbjct: 167 TAS 169
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 58.8 bits (143), Expect = 4e-09
Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 38/142 (26%)
Query: 66 AIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRN-------INAFRRVSCYIQQDD 117
A+MG +GAGKS+LL +LSG Y+ + G IL +G + A + I Q+
Sbjct: 34 ALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAALAAGVAI---IYQEL 88
Query: 118 RLQPLLTI-ENVM------------------------SLLGLDESQNTRSSQLSGGQKKR 152
L P +T+ EN+ LG+D +T LS GQ++
Sbjct: 89 HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQM 148
Query: 153 LSIALELINNPRVMFLDEPTTS 174
+ IA L N RV+ DEPT+S
Sbjct: 149 VEIAKALARNARVIAFDEPTSS 170
Score = 29.1 bits (66), Expect = 7.3
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 165 VMFLDEPTTSNPNDQKKRLS--IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ 222
+M L S N QK L ++ ++ +V+ LDEPT G+D + + ++ ++
Sbjct: 394 IMNL-----SGGNQQKAILGRWLSEDM----KVILLDEPTRGIDVGAKHEIYNVIYELAA 444
Query: 223 QGRTII 228
QG ++
Sbjct: 445 QGVAVL 450
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 57.0 bits (138), Expect = 5e-09
Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 53/189 (28%)
Query: 25 DRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL----- 79
+I +K DL Y G Q LK + NQ+ A++GPSG GKS+ L
Sbjct: 2 GKISVKDLDLFY------GDFQ----ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNR 51
Query: 80 --DVLSGYRSNGVTGQILTNG-----HSRNINAFR-RVSCYIQQDDRLQPLLTIENVM-- 129
D++ + + G++L +G ++N R RV QQ + P+ +NV
Sbjct: 52 MNDLIPSVK---IEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF-PMSIYDNVAYG 107
Query: 130 ------------------SLLG---LDESQNTRSSQ---LSGGQKKRLSIALELINNPRV 165
SL G DE ++ LSGGQ++RL IA L P V
Sbjct: 108 PRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEV 167
Query: 166 MFLDEPTTS 174
+ +DEPT++
Sbjct: 168 LLMDEPTSA 176
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 58.6 bits (142), Expect = 5e-09
Identities = 62/272 (22%), Positives = 127/272 (46%), Gaps = 32/272 (11%)
Query: 2 AQVEFELSNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPS 61
A+ F L +S ++GT R +++F+++T+ + + L ++
Sbjct: 304 AESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFR------YPGRDRPALDSISLVIEP 357
Query: 62 NQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQP 121
+ +A++G SG+GKS+L++++ + +GQIL +GH ++ Y R Q
Sbjct: 358 GETVALVGRSGSGKSTLVNLIPRFYEPD-SGQILLDGHD--------LADYTLASLRRQV 408
Query: 122 LLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIAL------ELINN-PRVMFLDEPTTS 174
L ++V+ L + N + + + AL + ++ P + LD P
Sbjct: 409 ALVSQDVV-LFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLP--LGLDTPIGE 465
Query: 175 N----PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICT 230
N Q++RL+IA L+ + ++ LDE T+ LD++S L+ + QGRT +
Sbjct: 466 NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL-MQGRTTLVI 524
Query: 231 IHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
H+ S + D++ ++ G+ + +G ++L
Sbjct: 525 AHRLST--IEKADRIVVMDDGRIVERGTHNEL 554
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 57.1 bits (138), Expect = 6e-09
Identities = 62/266 (23%), Positives = 110/266 (41%), Gaps = 71/266 (26%)
Query: 33 DLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG 92
D T+ + + F+ + +L L FP+ ++ ++G +G+GKS+LL +L G G
Sbjct: 9 DTTFALR-NVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPSEG 66
Query: 93 QILTNGH---SRNINAFRRVSCYIQQ------------------------------DDRL 119
+IL + S + AF R Y+ Q DR
Sbjct: 67 EILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADRE 126
Query: 120 QPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQ 179
+ +E +SL+GL + LSGG+++R IA+ + + R + LDEPT++
Sbjct: 127 K----VEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSA----- 177
Query: 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATL 238
L IA ++ + L+ +SQ+ G T+I +H +
Sbjct: 178 ---LDIAHQV----------------------DVLALVHRLSQERGLTVIAVLHDINMAA 212
Query: 239 FQMFDQVYLLSGGQCLYQGATDQLVN 264
+ D + L GG+ + QG +L+
Sbjct: 213 -RYCDYLVALRGGEMIAQGTPAELMR 237
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 56.9 bits (137), Expect = 6e-09
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 33/202 (16%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG------VTGQILTNG---H 99
K LKN+ + P N + A++GPSG GKS+ + L+ R N + G++ G +
Sbjct: 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN--RMNDLIKNCRIEGKVSIEGEDIY 82
Query: 100 SRNINAF---RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIA 156
+++ + V Q+ + P+ +NV ++ G KK L
Sbjct: 83 EPDVDVVELRKNVGMVFQKPNPF-PMSIYDNV-----------AYGPRIHGANKKDLDGV 130
Query: 157 LELINNPRVMF------LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSC 210
+E ++ L P S Q++RL IA L P+++ DEPT+ LD S
Sbjct: 131 VENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPIST 190
Query: 211 SQCIKLLKMISQQGRTIICTIH 232
++ I+ L M ++ TI+ H
Sbjct: 191 AR-IEDLIMNLKKDYTIVIVTH 211
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 56.5 bits (137), Expect = 7e-09
Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 47/176 (26%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+F+++T + K V NL + + ++GPSG+GK++ + ++ N
Sbjct: 1 IEFENVTKR------YGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMI-----N 48
Query: 89 GV----TGQILTNGHSRNINAF-----RRVSCYIQQDDRLQPLLTI-ENV---------- 128
+ +G+I +G +I RR Y+ Q L P +T+ EN+
Sbjct: 49 RLIEPTSGEIFIDG--EDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWP 106
Query: 129 -----------MSLLGLDESQ--NTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
++L+GLD ++ + +LSGGQ++R+ +A L +P ++ +DEP
Sbjct: 107 KEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEP 162
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 56.3 bits (136), Expect = 8e-09
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 45/166 (27%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG------VTGQILTNGHSRN 102
K L ++ F N++ A++GPSG+GKS+LL ++ R N +TG I+ NGH N
Sbjct: 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSIN--RMNDLNPEVTITGSIVYNGH--N 73
Query: 103 INAFR--------RVSCYIQQDDRLQPLLTIENV---MSLLG------LDESQNTRSSQ- 144
I + R + QQ + P+ ENV + L G LDE+
Sbjct: 74 IYSPRTDTVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGA 132
Query: 145 ----------------LSGGQKKRLSIALELINNPRVMFLDEPTTS 174
LSGGQ++R+ IA L +P+++ LDEPT++
Sbjct: 133 SIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSA 178
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 56.1 bits (135), Expect = 1e-08
Identities = 44/154 (28%), Positives = 60/154 (38%), Gaps = 30/154 (19%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG----HSRNIN 104
V +NL P AI+GP+G GKS+LL LS + G + +G H +
Sbjct: 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP-AHGHVWLDGEHIQHYASKE 78
Query: 105 AFRRVSCYIQQDDR----------------LQPLLT---------IENVMSLLGLDESQN 139
RR+ Q QPL T + M G+ +
Sbjct: 79 VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD 138
Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
LSGGQ++R IA+ L +M LDEPTT
Sbjct: 139 QSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTT 172
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 56.2 bits (136), Expect = 1e-08
Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 45/162 (27%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG----YRSNGVTGQILTNGH-----SRN 102
LKN+ NQ+ A +GPSG GKS+LL + Y G+IL +G ++
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 103 INAFR-RVSCYIQQ---------------------------DDRLQPLLTIENVMSLLGL 134
I R +V Q+ D+R++ LT +
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALW----- 143
Query: 135 DESQ---NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
+E + + LSGGQ++RL IA + P V+ LDEP +
Sbjct: 144 NEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCS 185
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 57.4 bits (139), Expect = 1e-08
Identities = 53/250 (21%), Positives = 97/250 (38%), Gaps = 62/250 (24%)
Query: 46 QEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN--- 102
K L+ + + + +AI+GPSG+GKS+L ++ G +G + +G
Sbjct: 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPP-TSGSVRLDGADLKQWD 386
Query: 103 INAFRRVSCYIQQDDRLQPLLTIEN-------------------------VMSL-LGLDE 136
F + Y+ QD L P EN ++ L G D
Sbjct: 387 RETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDT 446
Query: 137 SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVM 196
+ LSGGQ++R+++A R ++ +P+++
Sbjct: 447 VIGPGGATLSGGQRQRIALA-------RALY-----------------------GDPKLV 476
Query: 197 FLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQ 256
LDEP + LD + +K + +G T++ H+PS D++ +L G+
Sbjct: 477 VLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL--GCVDKILVLQDGRIARF 534
Query: 257 GATDQLVNYL 266
G D+++ L
Sbjct: 535 GERDEVLAKL 544
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 57.3 bits (139), Expect = 1e-08
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 32/165 (19%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGYRS-NGVTGQILTNG---HSRNINAFRRVSCYIQQD-- 116
Q +AI+GP+GAGKS+L+++L R + +G+IL +G + + RR + QD
Sbjct: 362 QTVAIVGPTGAGKSTLINLL--QRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAG 419
Query: 117 -------DRLQ---PLLTIENVM--------------SLLGLDESQNTRSSQLSGGQKKR 152
D ++ P T E + G D R QLSGG+++R
Sbjct: 420 LFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQR 479
Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMF 197
L+IA L+ +P ++ LDE T++ + + ++ AL+ + R F
Sbjct: 480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTF 524
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 55.9 bits (135), Expect = 1e-08
Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 29/261 (11%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR-- 86
I ++++YT G F+ L ++ A +G +G+GKS+++ +L+G
Sbjct: 3 INLQNVSYTYQAGTPFEGR---ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP 59
Query: 87 SNG---VTGQILTNGHSRN--INAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTR 141
+ G V ++T+ S+N I R+ + Q Q L E V+ + QN
Sbjct: 60 TQGSVRVDDTLITS-TSKNKDIKQIRKKVGLVFQFPESQ--LFEETVLKDVAFG-PQNFG 115
Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND----QKKRLSIALELINNPRVMF 197
SQ R +AL I+ + NP + Q +R++IA L P+++
Sbjct: 116 VSQEEAEALAREKLALVGIS-------ESLFEKNPFELSGGQMRRVAIAGILAMEPKILV 168
Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
LDEPT GLD + + + L K + Q G TI+ H + D VY+L G+ + G
Sbjct: 169 LDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSG 227
Query: 258 ATD---QLVNYLSSVNLPCPK 275
Q V++L L PK
Sbjct: 228 KPKDIFQDVDFLEEKQLGVPK 248
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 55.7 bits (134), Expect = 1e-08
Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 23/229 (10%)
Query: 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNG- 98
+ +LKN+ P N + A++GPSG GKS+ + D++ G+R G I +G
Sbjct: 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHE---GHIYLDGV 70
Query: 99 ----HSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLD-ESQNTRSSQLSGGQKKRL 153
+ ++ R+ + Q P +NV L + E + K
Sbjct: 71 DIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAA 130
Query: 154 SIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC 213
++ E+ + LD+ Q++RL IA + +P V+ +DEP + LD S ++
Sbjct: 131 ALWDEVKDK-----LDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKI 185
Query: 214 IKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
L+ + + +I T + AT + +L G+ + G TDQ+
Sbjct: 186 EDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFL--NGEIIESGLTDQI 232
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 57.3 bits (139), Expect = 2e-08
Identities = 59/276 (21%), Positives = 102/276 (36%), Gaps = 79/276 (28%)
Query: 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQIL-TNGHSR---- 101
+ K +LK + + + + I+GPSG+GKS+L +L G T+G R
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLL--------VGIWPPTSGSVRLDGA 398
Query: 102 -----NINAFRRVSCYIQQDDRLQPLLTIEN-------------------------VMSL 131
+ R Y+ QD L EN ++ L
Sbjct: 399 DLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRL 458
Query: 132 -LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI 190
G D + LSGGQ++R+++A R ++
Sbjct: 459 PQGYDTRIGEGGATLSGGQRQRIALA-------RALY----------------------- 488
Query: 191 NNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSG 250
+P ++ LDEP + LDS+ + + +G T++ H+PSA D++ +L
Sbjct: 489 GDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSA--LASVDKILVLQD 546
Query: 251 GQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIEL 286
G+ G +++ L+ V P P+ P V
Sbjct: 547 GRIAAFGPREEV---LAKVLRPPPRQAKPGTVVAPG 579
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 55.6 bits (134), Expect = 2e-08
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 40/149 (26%)
Query: 65 IAIMGPSGAGKSSLLDVL----------------SGYRSNGVTGQILTNGHSRNINAFRR 108
+A++GPSG+GKS++L +L Y G G L +++ R
Sbjct: 29 VALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGP-LVPADEKHLRQMRN 87
Query: 109 VSCYIQQDDRLQPLLT-IENV-------------------MSLL---GLDESQNTRSSQL 145
+ Q L P T ++NV M LL GL + + +QL
Sbjct: 88 KIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQL 147
Query: 146 SGGQKKRLSIALELINNPRVMFLDEPTTS 174
SGGQ++R++IA L P+VM DE T++
Sbjct: 148 SGGQQQRVAIARALAMRPKVMLFDEVTSA 176
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 55.2 bits (133), Expect = 2e-08
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 42/161 (26%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGHS--RN 102
LK++ P+ Q+ A++GPSG GKS+LL D++ G + +TG++ +G N
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK---ITGKLTMDGEDIYGN 75
Query: 103 INAFR---RVSCYIQQDDRLQPLLTIENVM--------------------SLLGL---DE 136
I+ +V Q+ + P+ ENV SL G DE
Sbjct: 76 IDVADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE 134
Query: 137 SQ---NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
+ + + LSGGQ++RL IA + P V+ +DEPT++
Sbjct: 135 VKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSA 175
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 56.4 bits (136), Expect = 2e-08
Identities = 55/269 (20%), Positives = 104/269 (38%), Gaps = 49/269 (18%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI---------NAFRRVSCYI 113
++ IMG SG+GKS+ + +L+ GQI +G NI R+ +
Sbjct: 20 EIFVIMGLSGSGKSTTVRMLNRL-IEPTAGQIFIDGE--NIMKQSPVELREVRRKKIGMV 76
Query: 114 QQDDRLQPLLTI-EN---VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLD 169
Q L P +TI +N LLG E + +K++ L+L+ +
Sbjct: 77 FQQFALFPHMTILQNTSLGPELLGWPEQE----------RKEKALELLKLVGLEE--YEH 124
Query: 170 EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS-QSCSQCIKLLKMISQQGRTII 228
++R+ +A L P ++ +DE + LD S +L K+ + +TI+
Sbjct: 125 RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIV 184
Query: 229 CTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPA-DFVIELA 287
H + ++ D++ ++ G+ + G D+++ NPA ++V E
Sbjct: 185 FITHDLDEAI-RIGDRIVIMKAGEIVQVGTPDEILR-------------NPANEYVEEFI 230
Query: 288 SGE-----YGVDNINAMVEQAQNDVKPDK 311
+ + I + DK
Sbjct: 231 GKVDLSQVFDAERIAQRMNTGPITKTADK 259
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 56.3 bits (136), Expect = 2e-08
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 41/159 (25%)
Query: 51 VLKNLCGRFPSN-------------QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN 97
VLKN+ RF SN ++ ++GPSG GK+++L +++G GQI +
Sbjct: 8 VLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE-KPTEGQIFID 66
Query: 98 GHS---RNINAFRRVSCYIQQDDRLQPLLTI-ENV---------------------MSLL 132
G R+I +R C + Q L P +++ ENV + L+
Sbjct: 67 GEDVTHRSIQ--QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV 124
Query: 133 GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
L ++ Q+SGGQ++R+++A LI P+V+ DEP
Sbjct: 125 DLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 56.2 bits (136), Expect = 2e-08
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 38/145 (26%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGHSRNIN--------AFRR-- 108
++ IMG SG+GKS+L+ +L+ R T G+IL +G ++I RR
Sbjct: 52 EEGEIFVIMGLSGSGKSTLVRLLN--RLIEPTRGEILVDG--KDIAKLSAAELRELRRKK 107
Query: 109 VSCYIQQDDRLQPLLTI-ENV---------------------MSLLGLDESQNTRSSQLS 146
+S Q L P T+ ENV + L+GL+ + ++LS
Sbjct: 108 ISMVFQSFA-LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELS 166
Query: 147 GGQKKRLSIALELINNPRVMFLDEP 171
GG ++R+ +A L N+P ++ +DE
Sbjct: 167 GGMQQRVGLARALANDPDILLMDEA 191
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 55.0 bits (132), Expect = 2e-08
Identities = 51/183 (27%), Positives = 77/183 (42%), Gaps = 47/183 (25%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
IK KDL++ +T + D+ +N ++ AI+GPSG GKS+ + L+ R +
Sbjct: 8 IKVKDLSFYYNTSKAIEGISMDIYRN--------KVTAIIGPSGCGKSTFIKTLN--RIS 57
Query: 89 GVTGQILTNG----------HSR-NINAFRRVSCYIQQDDRLQPLLTIENV--------- 128
+ G + G R NIN RR + Q P+ ENV
Sbjct: 58 ELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAK 117
Query: 129 MSLLGLDE-----------------SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
+ LDE N + LSGGQ++RL IA L P+V+ +DEP
Sbjct: 118 LPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEP 177
Query: 172 TTS 174
++
Sbjct: 178 CSA 180
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 55.1 bits (133), Expect = 2e-08
Identities = 54/245 (22%), Positives = 99/245 (40%), Gaps = 64/245 (26%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVL-------SGYRSNG---VTGQILTNGHS 100
VL + +++AI+GPSG+GK++LL + +G G + +
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 101 RNINAFRRVSCYIQQDDRLQPLLT-IENVM-------------------SLL---GLDES 137
I R+ ++ Q+ L P T +EN++ LL GL
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK 137
Query: 138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMF 197
+ + +LSGGQ++R++IA L A+ P V+
Sbjct: 138 ETSYPRRLSGGQQQRVAIARAL--------------------------AMR----PEVIL 167
Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
DEPT+ LD + + + ++ ++Q+ RT++ H+ S + D+ + G+ + QG
Sbjct: 168 FDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFAR-DVADRAIFMDQGRIVEQG 226
Query: 258 ATDQL 262
L
Sbjct: 227 PAKAL 231
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 55.6 bits (134), Expect = 2e-08
Identities = 54/238 (22%), Positives = 91/238 (38%), Gaps = 71/238 (29%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--R 86
IKF+++ Y S G + K L N+ +A++G +G+GKS+L+ +
Sbjct: 3 IKFENVDYIYSPGTPME---KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP 59
Query: 87 SNGVTG----QILTNGHSRNINAFRR-VSCYIQ--------------------------Q 115
S+G I ++N+ R+ VS Q
Sbjct: 60 SSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSED 119
Query: 116 DDRLQPLLTIENVMSLLGLDESQNTRSS-QLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
+ + + L ++ V GL E ++S +LSGGQ +R++IA VM
Sbjct: 120 EAKEKALKWLKKV----GLSEDLISKSPFELSGGQMRRVAIA-------GVM-------- 160
Query: 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH 232
P ++ LDEP GLD + + ++L K + G T+I H
Sbjct: 161 ---------------AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTH 203
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 56.2 bits (136), Expect = 3e-08
Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 63/228 (27%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG---HSRNINAFRRVSCYIQQDDRL-- 119
+A++GPSGAGKS+L +L + + +G+IL +G + R + QD L
Sbjct: 369 VALVGPSGAGKSTLFQLLLRF-YDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFA 427
Query: 120 ----------QPLLTIENVMS----------LLGLDESQNT----RSSQLSGGQKKRLSI 155
+P T E V + + L E +T R LSGGQ++R++I
Sbjct: 428 ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAI 487
Query: 156 ALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK 215
A R + D P ++ LDE T+ LD++S Q ++
Sbjct: 488 A-------RAILKDAP-----------------------ILLLDEATSALDAES-EQLVQ 516
Query: 216 LLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLV 263
+GRT + H+ AT+ D++ ++ G+ + QG +L+
Sbjct: 517 QALETLMKGRTTLIIAHR-LATV-LKADRIVVMDQGRIVAQGTHAELI 562
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 54.5 bits (131), Expect = 3e-08
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 29/134 (21%)
Query: 67 IMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH------SRNINAFRRVSCYIQQDDRL- 119
+ G SGAGKS+LL ++ G G+I +GH +R + RR I QD L
Sbjct: 33 LTGHSGAGKSTLLKLICGIERPS-AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91
Query: 120 ----------QPLLT-----------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE 158
PL+ + + +GL + QLSGG+++R+ IA
Sbjct: 92 MDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARA 151
Query: 159 LINNPRVMFLDEPT 172
++N P V+ DEPT
Sbjct: 152 VVNKPAVLLADEPT 165
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 55.0 bits (132), Expect = 3e-08
Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 75/226 (33%)
Query: 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR-- 107
+VLK + + + +I+I+G SG+GKS+ L ++ + G I+ NG + IN R
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEKPSEGSIVVNG--QTINLVRDK 75
Query: 108 -----------------RVSCYIQQDDRLQPLLTIENVM----SLLGL------------ 134
R++ Q + + +ENVM +LGL
Sbjct: 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKY 135
Query: 135 -------DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL 187
+ +Q LSGGQ++R+SIA L A+
Sbjct: 136 LAKVGIDERAQGKYPVHLSGGQQQRVSIARAL--------------------------AM 169
Query: 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQ 233
E P V+ DEPT+ LD + + +++++ ++++G+T++ H+
Sbjct: 170 E----PEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 53.2 bits (129), Expect = 4e-08
Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 50/172 (29%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN----AFRRVSCYIQQDDRLQ 120
+ I G G G++ L + L G R +G+I +G A R Y+ +DR +
Sbjct: 29 VGIAGLVGNGQTELAEALFGLRP-PASGEITLDGKPVTRRSPRDAIRAGIAYVP-EDRKR 86
Query: 121 ----PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
L++ ++L SS LSGG
Sbjct: 87 EGLVLDLSVAENIAL----------SSLLSGG---------------------------- 108
Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
N QK + +A L +PRV+ LDEPT G+D + ++ +L++ ++ G+ ++
Sbjct: 109 NQQK--VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 54.1 bits (130), Expect = 4e-08
Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGY--RSNGVTGQILTNGHSRNINAF-----RRVS----C 111
+++ I+G SG+GKS+LL L+G +G I+ +G + RR+
Sbjct: 30 EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWG 89
Query: 112 YIQQDDRLQPLLTI-------ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
++ Q+ R + + E +M++ G N R + + + I I+
Sbjct: 90 FVHQNPRDGLRMRVSAGANIGERLMAI-GARHYGNIR--ATAQDWLEEVEIDPTRID--- 143
Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQ 223
D P + Q+ RL IA L+ PR++F+DEPT GLD ++ + LL+ ++
Sbjct: 144 ----DLPRAFSGGMQQ-RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDL 198
Query: 224 GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
G +I H + ++ ++ G+ + G TDQ+++
Sbjct: 199 GLAVIIVTHD-LGVARLLAQRLLVMQQGRVVESGLTDQVLD 238
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 54.0 bits (130), Expect = 4e-08
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 23/195 (11%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQI----------LTNGH 99
VL+N+ + + + + GPSG+GKS+LL L Y + GQI L
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE--GQILVRHEGEWVDLVTAE 83
Query: 100 SRNINAFRRVSC-YIQQDDRLQPLL-TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIAL 157
R + RR + Y+ Q R+ P + ++ V L L ++ + L L
Sbjct: 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPL-LARGVPREVAR---AKAADL---L 136
Query: 158 ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL 217
+N P ++ P T + +Q+ R++IA I + ++ LDEPT LD+ + + ++L+
Sbjct: 137 TRLNLPERLWSLAPATFSGGEQQ-RVNIARGFIVDYPILLLDEPTASLDATNRAVVVELI 195
Query: 218 KMISQQGRTIICTIH 232
+ +G ++ H
Sbjct: 196 REAKARGAALVGIFH 210
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 52.4 bits (126), Expect = 6e-08
Identities = 38/188 (20%), Positives = 64/188 (34%), Gaps = 54/188 (28%)
Query: 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDR 118
F L I GP+G+GKS++LD + G G + R+ + +
Sbjct: 18 FGEGSLTIITGPNGSGKSTILDAI-GL----ALGGAQSATRRRSGVKAGCIVAAV----S 68
Query: 119 LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
+ + T QLSGG+K+ ++AL L
Sbjct: 69 AELIFTR-----------------LQLSGGEKELSALALIL------------------- 92
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
AL + + LDE GLD + + + +G +I H P L
Sbjct: 93 -------ALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--EL 143
Query: 239 FQMFDQVY 246
++ D++
Sbjct: 144 AELADKLI 151
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 54.0 bits (130), Expect = 6e-08
Identities = 42/194 (21%), Positives = 86/194 (44%), Gaps = 39/194 (20%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--- 85
++FK +++T + K L ++ P A++G +G+GKS++ +++G
Sbjct: 6 VEFKHVSFT------YPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP 59
Query: 86 -----RSNGVTGQILTNGHSRNINAFRRVSCYIQQDD----------------------R 118
V G LT +I +V Q D R
Sbjct: 60 DDNPNSKITVDGITLTAKTVWDIR--EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPR 117
Query: 119 LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS-NPN 177
+ + + +V++ +G+ + ++ + LSGGQK+R++IA L P+++ LDE T+ +P
Sbjct: 118 PEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177
Query: 178 DQKKRLSIALELIN 191
+++ L + +L
Sbjct: 178 GKEQILKLIRKLKK 191
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 53.9 bits (129), Expect = 6e-08
Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 39/167 (23%)
Query: 42 LGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR 101
L F + + +L+ + +++ AI+GPSG GKS+ L L+ R N + ++ G
Sbjct: 13 LSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLN--RMNELESEVRVEGRVE 70
Query: 102 -----------NINAFRRVSCYIQQDDRLQPLLTIENV---MSLLGL------------- 134
N+N RR + L P+ +NV + ++G
Sbjct: 71 FFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESA 130
Query: 135 -------DESQNT---RSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
DE ++ + LSGGQ++RL IA L P+V+ +DEP
Sbjct: 131 LKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP 177
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 55.0 bits (133), Expect = 7e-08
Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 25/182 (13%)
Query: 7 ELSNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIA 66
+ + + + I ++L+ + T G + +L L + +
Sbjct: 371 MDTEKPARTGRRIDFDDNADHGITLENLS--LRTPDG-----QTLLSELNFEVRPGERLL 423
Query: 67 IMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----------NAFRRVSCYIQQD 116
I G SGAGK+SLL L+G G +G+I S + R CY
Sbjct: 424 ITGESGAGKTSLLRALAGLWPWG-SGRISMPADSALLFLPQRPYLPQGTLREALCYPNAA 482
Query: 117 DRLQPLLTIENVMSLLGLD------ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
+ V+ +GL + ++ LSGG+++RL+ A L++ P+ +FLDE
Sbjct: 483 PDFSDA-ELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDE 541
Query: 171 PT 172
T
Sbjct: 542 AT 543
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 53.6 bits (129), Expect = 8e-08
Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 33/222 (14%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGY--RSNGVTGQILTNGHSRNI----NAFRRVSC----- 111
+++ I+G SG+GK++LL +SG G + +G R++ A RR
Sbjct: 33 EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWG 92
Query: 112 YIQQD--DRLQPLLTI-----ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
++ Q+ D L+ ++ E +M++ G N R + + + I L+ I+
Sbjct: 93 FVHQNPRDGLRMQVSAGGNIGERLMAI-GARHYGNIR--AEAQDWLEEVEIDLDRID--- 146
Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQ 223
D P T + Q+ RL IA L+ PR++F+DEPT GLD ++ + LL+ ++ +
Sbjct: 147 ----DLPRTFSGGMQQ-RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL 201
Query: 224 GRTIICTIHQPS-ATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
G ++ H + A L D++ ++ GQ + G TD++++
Sbjct: 202 GLAVVIVTHDLAVARLLA--DRLMVMKQGQVVESGLTDRVLD 241
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 53.4 bits (129), Expect = 9e-08
Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 33/222 (14%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFRRV 109
LK++ + + I+G +GAGKS+LL +++G Y+ +G++ G +V
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT--SGKVKVTG---------KV 90
Query: 110 SCYIQQDDRLQPLLT-IENV---MSLLGLDESQNTRSSQLSGGQKKRLSIA--LELINNP 163
+ I+ P LT EN+ +LGL + +K I EL +
Sbjct: 91 APLIELGAGFDPELTGRENIYLRGLILGLTRKEI---------DEKVDEIIEFAELGD-- 139
Query: 164 RVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ 223
F+D+P + + RL+ ++ P ++ LDE D+ +C++ L + ++
Sbjct: 140 ---FIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK 196
Query: 224 GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNY 265
+TI+ H A Q D+ L GQ +G+ ++++
Sbjct: 197 NKTIVLVSHDLGAIK-QYCDRAIWLEHGQIRMEGSPEEVIPA 237
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 53.5 bits (129), Expect = 9e-08
Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 39/179 (21%)
Query: 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY- 85
++I F+ + + F+ + L ++ PS +AI+G +G+GKS+LL L+G
Sbjct: 1 MDITFQKVEHRYQYKTPFE---RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL 57
Query: 86 --RSNGVT--GQILTNGHS-RNINAFR-RVSCYIQ------------------------- 114
S VT +++T G + + R +V Q
Sbjct: 58 QPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVS 117
Query: 115 QDDRLQPLLTIENVMSLLGLDESQNTRSS-QLSGGQKKRLSIALELINNPRVMFLDEPT 172
++D Q ++ L+GL E RS +LSGGQ +R++IA L P V+ LDEPT
Sbjct: 118 EEDAKQ---KAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPT 173
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 52.4 bits (126), Expect = 9e-08
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 35/166 (21%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR- 86
EI+ ++L+ + L P VLKN+ + + + I I+G +GAGKS+L +L+ +R
Sbjct: 6 EIEVENLSVRYAPDL-----PP-VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRF 57
Query: 87 SNGVTGQILTNG---HSRNINAFRRVSCYIQQDDRLQPLL---TI------------ENV 128
G+I +G + + R I QD P L TI E +
Sbjct: 58 LEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQD----PTLFSGTIRSNLDPFDEYSDEEI 113
Query: 129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
L + E LS GQ++ L +A L+ PRV+ LDE T S
Sbjct: 114 YGALRVSEG----GLNLSQGQRQLLCLARALLKRPRVLVLDEATAS 155
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 53.3 bits (128), Expect = 1e-07
Identities = 67/246 (27%), Positives = 114/246 (46%), Gaps = 29/246 (11%)
Query: 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86
+E++ T+ TG F+++ + +K L Q +AI+G +G+GKS+L +L+G
Sbjct: 5 LEVRNLSKTFRYRTGW-FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63
Query: 87 SNGVTGQILTNGHSRNINAFRRVSCYIQ---QD--DRLQPLLTIENVMSL-LGLDESQNT 140
+G++L + H + + S I+ QD L P I ++ L L NT
Sbjct: 64 EP-TSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRL----NT 118
Query: 141 RSSQLSGGQK-KRLSIALELINNPRVMFLDEPTTSNPN----DQKKRLSIALELINNPRV 195
L Q+ K++ L +V L + + P+ QK+RL +A LI P+V
Sbjct: 119 ---DLEPEQREKQIIETLR-----QVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKV 170
Query: 196 MFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH--QPSATLFQMFDQVYLLSGGQC 253
+ DE LD SQ I L M+ Q + I I+ Q + + DQV ++ G+
Sbjct: 171 IIADEALASLDMSMRSQLINL--MLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEV 228
Query: 254 LYQGAT 259
+ +G+T
Sbjct: 229 VERGST 234
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 55.0 bits (132), Expect = 1e-07
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 25/139 (17%)
Query: 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH--SRNINAFRR-------- 108
F NQ+ A +G +GAGK++ L +L+G +G +L G N++A R+
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPP-TSGTVLVGGKDIETNLDAVRQSLGMCPQH 1011
Query: 109 ------------VSCYIQQDDRLQ--PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS 154
+ Y Q R L +E ++ GL +N + LSGG +++LS
Sbjct: 1012 NILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLS 1071
Query: 155 IALELINNPRVMFLDEPTT 173
+A+ + + +V+ LDEPT+
Sbjct: 1072 VAIAFVGDAKVVVLDEPTS 1090
Score = 50.0 bits (119), Expect = 4e-06
Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 13/181 (7%)
Query: 55 LCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS--RNINAFRRVSCY 112
LC + ++G +GAGK++ +L+G + +G G S NI+ + Y
Sbjct: 1958 LCVGVRPGECFGLLGVNGAGKTTTFKMLTG-DTTVTSGDATVAGKSILTNISDVHQNMGY 2016
Query: 113 IQQDDRLQPLLTIENVMSLLG-LDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
Q D + LLT + L L +++ + L ++L + D
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL---------YADRL 2067
Query: 172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTI 231
+ K++LS A+ LI P ++ LDEPTTG+D Q+ + I ++GR ++ T
Sbjct: 2068 AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTS 2127
Query: 232 H 232
H
Sbjct: 2128 H 2128
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 51.6 bits (124), Expect = 1e-07
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 46/185 (24%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLL-DVLSGYRSNGVTGQILTNGHSRNINAFRRVS 110
L+NL P N L+ + G SG+GKS+L+ + L + + ++ I
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI----- 65
Query: 111 CYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
D+LQ L I+ + L L + +T LSGG+ +R+ +A EL + P
Sbjct: 66 ------DQLQFL--IDVGLGYLTLGQKLST----LSGGELQRVKLASELFSEPP------ 107
Query: 171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICT 230
+ LDEP+TGL Q +Q ++++K + G T+I
Sbjct: 108 ----------------------GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILI 145
Query: 231 IHQPS 235
H
Sbjct: 146 EHNLD 150
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 53.1 bits (128), Expect = 1e-07
Identities = 60/261 (22%), Positives = 120/261 (45%), Gaps = 29/261 (11%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
IK ++LT+ G F+ K L N+ + + ++G +G+GKS+L+ L+G
Sbjct: 3 IKIENLTHIYMEGTPFE---KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK- 58
Query: 89 GVTGQILTNG-----HSRNINAFRRVSCYIQQDDRLQPLL--TIENVMSL----LGLDES 137
+G+I+ +G ++ R+ + Q Q L TIE ++ LGL E
Sbjct: 59 PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQ-LFEETIEKDIAFGPINLGLSEE 117
Query: 138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMF 197
+ + R+ A+ ++ + D+ QK+R++IA + P+++
Sbjct: 118 E----------IENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILI 167
Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
LDEPT GLD + + + +K + ++ I + + ++ D++ +++ G+C QG
Sbjct: 168 LDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQG 227
Query: 258 ATDQL---VNYLSSVNLPCPK 275
++ V L S+ L P+
Sbjct: 228 TPREVFKEVETLESIGLAVPQ 248
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 54.0 bits (130), Expect = 1e-07
Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 27/243 (11%)
Query: 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY 85
RI+I ++++ VL+N+ PS +A++G +G+GKS+L +L GY
Sbjct: 340 RIDID--NVSFAYRDD-------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY 390
Query: 86 RSNGVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLLTIENVMS--LLGLDESQNT 140
G+I +G S + + R+ +QQD P++ + ++ LG D S+
Sbjct: 391 YPLT-EGEIRLDGRPLSSLSHSVLRQGVAMVQQD----PVVLADTFLANVTLGRDISEEQ 445
Query: 141 RSSQLSGGQKKRLSIAL-ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD 199
L Q L+ +L + + P L E + QK+ L++A L+ P+++ LD
Sbjct: 446 VWQALETVQLAELARSLPDGLYTP----LGEQGNNLSVGQKQLLALARVLVQTPQILILD 501
Query: 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259
E T +DS + + L + + T++ H+ S T+ + D + +L GQ + QG
Sbjct: 502 EATANIDSGTEQAIQQALAAVREH-TTLVVIAHRLS-TIVEA-DTILVLHRGQAVEQGTH 558
Query: 260 DQL 262
QL
Sbjct: 559 QQL 561
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 52.7 bits (127), Expect = 2e-07
Identities = 52/213 (24%), Positives = 96/213 (45%), Gaps = 19/213 (8%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108
K + N+ P ++ ++GP+GAGK++ ++ G G+I NG + R
Sbjct: 15 KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL-LEPTEGEITWNGGPLSQEIKNR 73
Query: 109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQK----KRLSIALELINNPR 164
+ Y+ ++ L P +T+E+ + L +L G K K+L LE +
Sbjct: 74 IG-YLPEERGLYPKMTVEDQLKYLA----------ELKGMPKAEIQKKLQAWLERLEIVG 122
Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG 224
S N QK + A+ I+ P ++ LDEP +GLD + + + ++G
Sbjct: 123 KKTKKIKELSKGNQQKIQFISAV--IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180
Query: 225 RTIICTIHQPSATLFQMFDQVYLLSGGQCLYQG 257
TII + H+ + ++ D++ +L GQ + G
Sbjct: 181 ATIIFSSHRME-HVEELCDRLLMLKKGQTVLYG 212
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 52.5 bits (126), Expect = 2e-07
Identities = 63/239 (26%), Positives = 110/239 (46%), Gaps = 25/239 (10%)
Query: 35 TYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI 94
T+ TGL F+++ + +K + Q +AI+G +G+GKS+L +L+G +G+I
Sbjct: 13 TFRYRTGL-FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-TSGEI 70
Query: 95 LTNGHSRNINAFRRVSCYIQ---QD--DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQ 149
L N H + + S I+ QD L P L I + LD + +
Sbjct: 71 LINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQI-----LDFPLRLNTDLEPEQR 125
Query: 150 KKRLSIALELINNPRVMFLDEPTTSNPN----DQKKRLSIALELINNPRVMFLDEPTTGL 205
+K++ L + V L + P+ QK+R+++A LI P+++ DE L
Sbjct: 126 RKQIFETLRM-----VGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASL 180
Query: 206 DSQSCSQCIKLLKMISQQGRTIICTIH--QPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
D SQ I L M+ Q + I I+ Q + + DQV ++ G+ + +G+T +
Sbjct: 181 DMSMRSQLINL--MLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV 237
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 52.1 bits (125), Expect = 2e-07
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 30/160 (18%)
Query: 41 GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH- 99
G+ F + + + N+ P ++ AIMGPSG GK++LL ++ G + G+IL +G
Sbjct: 12 GVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD-HGEILFDGEN 70
Query: 100 ----SR---------------------NINAFRRVSCYIQQDDRLQPLLTIENVMSLL-- 132
SR ++N F V+ +++ +L L VM L
Sbjct: 71 IPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEA 130
Query: 133 -GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
GL + S+LSGG +R ++A + P ++ DEP
Sbjct: 131 VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEP 170
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 52.2 bits (125), Expect = 2e-07
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 36/174 (20%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS----GYRSNGVTGQILTNGHS-----RN 102
LKN+ P N++ AI+GPSG GKS+ + L+ + +TG++ NG + +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 103 INAFRRVSCYIQQDDRLQPLLTIENVM--------------------SLLGL---DESQN 139
+ R+ + Q P +NV SL + DE ++
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 140 TRSSQ---LSGGQKKRLSIALELINNPRVMFLDEPTTS-NPNDQKKRLSIALEL 189
+Q LSGGQ++RL IA L NP V+ +DEPT++ +P +K + L+L
Sbjct: 148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 53.4 bits (129), Expect = 2e-07
Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 61/164 (37%)
Query: 62 NQLIAIMGPSGAGKSSLLDVLSG----------------------------------YRS 87
N+ + ++G +GAGKS+L+ +L+G + +
Sbjct: 29 NERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVA 88
Query: 88 NGVT--GQILTNGHS-----------RNINAFRRVSCYI------QQDDRLQPLLTIENV 128
G+ + L H +N+N ++ + Q ++R I V
Sbjct: 89 EGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENR------INEV 142
Query: 129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
++ LGLD + S LSGG ++ ++ L++NP V+ LDEPT
Sbjct: 143 LAQLGLDP--DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPT 184
Score = 30.7 bits (70), Expect = 2.7
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 145 LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI-ALELI 190
LSGG++ RL +A + ++ LDEPT ND L + LEL+
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPT----ND----LDVETLELL 479
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 53.3 bits (128), Expect = 3e-07
Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 17/177 (9%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI----NAFRRVSCYIQQDDR 118
+++ + G GAG++ L+ L G G + NG +I A R + +D +
Sbjct: 287 EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRK 346
Query: 119 LQ---PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM----FLDEP 171
P+L + ++L L ++ L I I +V FL
Sbjct: 347 RHGIVPILGVGKNITLSVLKSF--CFKMRID--AAAELQIIGSAIQRLKVKTASPFLPIG 402
Query: 172 TTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
S N QK L+ L NPRV+ LDEPT G+D + + KL+ ++Q+G II
Sbjct: 403 RLSGGNQQKAVLAKMLLT--NPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
Score = 52.1 bits (125), Expect = 6e-07
Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 32/155 (20%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGV-TGQILTNGH---SRNINAFR 107
L + + + + G +GAGKS+L+ +LSG +G G+I +G + NI
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 108 RVS-CYIQQDDRLQPLLTI--------------------------ENVMSLLGLDESQNT 140
R I Q+ L P L++ +N++ L LD T
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 141 RS-SQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
R GGQ++ + IA L R++ LDEP++S
Sbjct: 137 RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSS 171
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 51.9 bits (125), Expect = 3e-07
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 29/162 (17%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSG----------YRSN-GVTGQILTNGHSRNINAFRRVSC 111
+++ I+G SG+GK++LL+ LS YR G + + R
Sbjct: 33 EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWG 92
Query: 112 YIQQD--DRLQPLLTI-----ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
++ Q D L+ ++ E +M++ G + R++ + R+ I I+
Sbjct: 93 FVHQHPRDGLRMQVSAGGNIGERLMAV-GARHYGDIRATAGDWLE--RVEIDAARID--- 146
Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206
D PTT + Q+ RL IA L+ +PR++F+DEPT GLD
Sbjct: 147 ----DLPTTFSGGMQQ-RLQIARNLVTHPRLVFMDEPTGGLD 183
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 53.1 bits (128), Expect = 3e-07
Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 43/208 (20%)
Query: 7 ELSNSLSSSESGTSLETADRIEIKFK-DLTYTVSTGLG--------FKQEP-KDVLKNLC 56
E+ +L+ E L E+ D LG F +P + +L +
Sbjct: 225 EIRQALTDMEKMFDLLDV-EAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGIS 283
Query: 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYR-SNGVTGQILTNGHS-RNI--NAFRRVSCY 112
P + +AI+G SGAGKS++L +L +R + +G I +G R++ + RR
Sbjct: 284 FTIPLGKTVAIVGESGAGKSTILRLL--FRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI 341
Query: 113 IQQDDRL------------QPLLTIENVMSLL--------------GLDESQNTRSSQLS 146
+ QD L +P T E V + G D R +LS
Sbjct: 342 VPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLS 401
Query: 147 GGQKKRLSIALELINNPRVMFLDEPTTS 174
GG+K+R++IA ++ NP ++ LDE T++
Sbjct: 402 GGEKQRVAIARTILKNPPILILDEATSA 429
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 51.6 bits (123), Expect = 3e-07
Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 21/216 (9%)
Query: 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSN----GVTGQILTNGHS-----RNINAFRRV 109
F +L A++GPSG GKS+ L L+ + +TG+I G + ++ R+
Sbjct: 27 FEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKE 86
Query: 110 SCYIQQDDRLQPLLTIENV---MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM 166
+ Q P +NV + + G+ + + Q K+ +I E +N
Sbjct: 87 VGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELI--DQRVEESLKQAAIWKETKDN---- 140
Query: 167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRT 226
LD + Q++R+ IA L P+V+ LDEPT+ LD S S+ + L + Q
Sbjct: 141 -LDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTF 199
Query: 227 IICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
I+ T + A ++ DQ L G + G T+++
Sbjct: 200 IMVTHNLQQAG--RISDQTAFLMNGDLIEAGPTEEM 233
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 53.0 bits (128), Expect = 4e-07
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 32/145 (22%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFRRVSC---YIQQ 115
Q +A++G SG+GKS++ +++G Y+ G+IL +G R ++ + Q
Sbjct: 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWS--GEILFDGIPREEIPREVLANSVAMVDQ 560
Query: 116 D---------DRL---QPLLTIEN-------------VMSLLGLDESQNTRS-SQLSGGQ 149
D D L P + + + S G +++ + LSGGQ
Sbjct: 561 DIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQ 620
Query: 150 KKRLSIALELINNPRVMFLDEPTTS 174
++RL IA L+ NP ++ LDE T++
Sbjct: 621 RQRLEIARALVRNPSILILDEATSA 645
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 51.6 bits (123), Expect = 4e-07
Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 25/194 (12%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGH----- 99
LK + ++A +GPSG GKS+ L D++ R + G+I +G
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR---LEGEIRIDGRNIYDK 75
Query: 100 SRNINAFRRVSCYIQQDDRLQPLLTIENV---MSLLGLDESQNTRSSQLSGGQKKRLSIA 156
++ R+ + Q P ENV + + G+ ++ R K ++
Sbjct: 76 GVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEE--TLKGAALW 133
Query: 157 LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL 216
E+ + L E + Q++RL IA + +P V+ +DEP + LD S ++ +L
Sbjct: 134 DEVKDK-----LKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEEL 188
Query: 217 LKMISQQGRTIICT 230
+ + + +I T
Sbjct: 189 IHELKKDYTIVIVT 202
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 52.8 bits (127), Expect = 4e-07
Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 25/230 (10%)
Query: 48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSS----LLDVLSGYRSNGVTGQILTNGHSRNI 103
V+KN+ + + ++G SG+GKS+ LL +++ GQ L N + R +
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQL 357
Query: 104 NAFRRVSCYIQQD--DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK-RLSIALELI 160
R + QD L P L + ++ E LS Q++ ++ +E +
Sbjct: 358 LPVRHRIQVVFQDPNSSLNPRLNVLQIIE-----EGLRVHQPTLSAAQREQQVIAVMEEV 412
Query: 161 NNPRVMFLDEPTTSN--PND----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI 214
LD P T + P + Q++R++IA LI P ++ LDEPT+ LD +Q +
Sbjct: 413 G------LD-PETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL 465
Query: 215 KLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
LLK + Q+ + I + + QV +L G+ + QG +++
Sbjct: 466 ALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFA 515
Score = 47.4 bits (113), Expect = 2e-05
Identities = 57/245 (23%), Positives = 111/245 (45%), Gaps = 31/245 (12%)
Query: 41 GLGFKQ--EPKDVLKNLCGRFPSNQLIAIMGPSGAGKS-SLLDVLSGYRSNGV---TGQI 94
+ F+Q + V+ ++ + + + +A++G SG+GKS + L +L S V +G I
Sbjct: 12 SVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDI 71
Query: 95 LTNGHS------RNINAFR--RVSCYIQQD-DRLQPLLTIEN----VMSLLGLDESQNTR 141
+G S + + R +++ Q+ L PL T+E V+SL + R
Sbjct: 72 RFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAAR 131
Query: 142 SSQLSGGQKKRLSIALEL--INNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD 199
L+ L+ I D P + +++R+ IA+ L+ P ++ D
Sbjct: 132 GEILNC---------LDRVGIRQAAKRLTDYPHQLS-GGERQRVMIAMALLTRPELLIAD 181
Query: 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259
EPTT LD +Q ++LL+ + Q+ + I + + ++ D+V ++ G+C+ Q
Sbjct: 182 EPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRA 241
Query: 260 DQLVN 264
L +
Sbjct: 242 ATLFS 246
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 52.6 bits (126), Expect = 4e-07
Identities = 53/240 (22%), Positives = 104/240 (43%), Gaps = 22/240 (9%)
Query: 42 LGFKQE--PKDVLKNLCGRFPSNQLIAIMGPSGAGKS----SLLDVLSGYRSNGVTGQIL 95
+ F QE ++NL + +AI+G SG+GKS +L+ +L ++L
Sbjct: 20 IAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKML 79
Query: 96 TNGHSRNINAFRRVSCYIQQDDR-------LQPLLTIENVMSLLGLDESQNTRSSQLSGG 148
SR + S + R Q +T N + +G +++ R Q +
Sbjct: 80 LRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASR 139
Query: 149 QK-----KRLSIALELINNPRV-MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202
++ KR+ L+ + P L ++R+ IA+ L P V+ DEPT
Sbjct: 140 EEAMVEAKRM---LDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPT 196
Query: 203 TGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
T LD +Q ++L+K++ ++ + I + ++ D+V ++ G+ + G+ +Q+
Sbjct: 197 TALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
Score = 40.2 bits (94), Expect = 0.003
Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 37/172 (21%)
Query: 65 IAIMGPSGAGKS----SLLDVLSGYRSNGVTGQILTNGH------SRNINAFRRVSCYIQ 114
++++G SG+GKS +LL ++ S G G+I+ NG + A RR +I
Sbjct: 353 LSLVGESGSGKSTTGRALLRLVE---SQG--GEIIFNGQRIDTLSPGKLQALRRDIQFIF 407
Query: 115 QDD--RLQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQ--KKRLSIALELINNPRVMFLD 169
QD L P T+ +++M L R L G+ R++ LE RV L
Sbjct: 408 QDPYASLDPRQTVGDSIMEPL--------RVHGLLPGKAAAARVAWLLE-----RVGLLP 454
Query: 170 EPTTSNPND----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL 217
E P++ Q++R+ IA L NP+V+ DE + LD Q I LL
Sbjct: 455 EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLL 506
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 51.3 bits (123), Expect = 4e-07
Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 35/157 (22%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNG-VT--GQILTNGHSR 101
+KN+ P NQ+ A +GPSG GKS++L D++ G+R G VT G+ L
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 102 NINAFRRVSCYIQQDDRLQPLLTIENVM---SLLG----LDE-----------------S 137
+ RR+ Q+ + P +N+ + G +DE
Sbjct: 86 PVEVRRRIGMVFQKPNPF-PKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK 144
Query: 138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
LSGGQ++RL IA + P V+ +DEP ++
Sbjct: 145 LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA 181
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 51.2 bits (122), Expect = 5e-07
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 16/184 (8%)
Query: 58 RFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGHSRNINA--FRR 108
+ P+ ++IA +GPSG GKS+LL D++ G + G N + IN+ RR
Sbjct: 42 KIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRR 101
Query: 109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFL 168
+ Q P EN+ + +L +R +I E+ + L
Sbjct: 102 QVGMVFQRPNPFPKSIYENI-AFAPRANGYKGNLDELVEDSLRRAAIWEEVKDK-----L 155
Query: 169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
E T+ Q++RL IA + P V+ +DEP + LD S Q +L + +Q TII
Sbjct: 156 KEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ-YTII 214
Query: 229 CTIH 232
H
Sbjct: 215 MVTH 218
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 51.1 bits (123), Expect = 6e-07
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 42/140 (30%)
Query: 67 IMGPSGAGKSSLLDVLSGYRSNGV----TGQILTNGHSRNINAF---------RRVSCYI 113
IMG SG+GKS+LL + N + +G++L +G ++I A R+ +
Sbjct: 55 IMGLSGSGKSTLLRCI-----NRLIEPTSGKVLIDG--QDIAAMSRKELRELRRKKISMV 107
Query: 114 QQDDRLQPLLTI-ENV---------------------MSLLGLDESQNTRSSQLSGGQKK 151
Q L P T+ ENV + L+GL+ ++ +LSGG ++
Sbjct: 108 FQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQ 167
Query: 152 RLSIALELINNPRVMFLDEP 171
R+ +A L +P ++ +DE
Sbjct: 168 RVGLARALAVDPDILLMDEA 187
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 52.0 bits (125), Expect = 6e-07
Identities = 60/252 (23%), Positives = 104/252 (41%), Gaps = 67/252 (26%)
Query: 44 FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSG------------ 84
+ Q L+N+ Q++ I GP+G+GKS+LL DV G
Sbjct: 323 YPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKL 382
Query: 85 ----YRSN-GVTGQ---ILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-ENVMSL-LGL 134
+RS V Q + ++ + NI A R Q+ + + L ++ ++++ L G
Sbjct: 383 QLDSWRSRLAVVSQTPFLFSDTVANNI-ALGRPDATQQEIEHVARLASVHDDILRLPQGY 441
Query: 135 DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPR 194
D R LSGGQK+R+SIA R + L+
Sbjct: 442 DTEVGERGVMLSGGQKQRISIA-------RALLLNA-----------------------E 471
Query: 195 VMFLDEPTTGLDSQSCSQCIKLLKMISQ--QGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252
++ LD+ + +D ++ Q +L + Q +GRT+I + H+ SA ++ ++ G
Sbjct: 472 ILILDDALSAVDGRTEHQ---ILHNLRQWGEGRTVIISAHRLSA--LTEASEILVMQHGH 526
Query: 253 CLYQGATDQLVN 264
+G DQL
Sbjct: 527 IAQRGNHDQLAQ 538
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 51.0 bits (122), Expect = 6e-07
Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 23/191 (12%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSC 111
L++ P + A++G +G+GKS+L L G+ +G+I G + +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA-SGKISILGQPTRQALQKNLVA 81
Query: 112 YIQQDDRLQ---PLLTIENVM----SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
Y+ Q + + P+L + VM +G R Q ++ AL R
Sbjct: 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQ-------IVTAALA-----R 129
Query: 165 VMFLD---EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS 221
V ++ QKKR+ +A + +V+ LDEP TG+D ++ ++ I LL+ +
Sbjct: 130 VDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR 189
Query: 222 QQGRTIICTIH 232
+G+T++ + H
Sbjct: 190 DEGKTMLVSTH 200
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 50.2 bits (121), Expect = 7e-07
Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 33/221 (14%)
Query: 39 STGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTN 97
G + LK++ P + I ++G +GAGKS+LL +L+G Y + +G +
Sbjct: 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD--SGTVTVR 82
Query: 98 GHSRNINAFRRVSCYIQQDDRLQPLLT-IENV---MSLLGLDESQNTRSSQLSGGQKKRL 153
G RVS + P LT EN+ LLGL + +K
Sbjct: 83 G---------RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEI---------DEKID 124
Query: 154 SIA--LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCS 211
I EL + F+D P + + K RL+ A+ P ++ +DE D+
Sbjct: 125 EIIEFSELGD-----FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQE 179
Query: 212 QCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQ 252
+C + L+ + +QG+T+I H PS+ ++ D+ +L G+
Sbjct: 180 KCQRRLRELLKQGKTVILVSHDPSSIK-RLCDRALVLEKGK 219
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 50.6 bits (121), Expect = 8e-07
Identities = 65/287 (22%), Positives = 120/287 (41%), Gaps = 45/287 (15%)
Query: 9 SNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDV-------LKNLCGRFPS 61
S+ TS E+ ++ ++ D + L E DV LK + P
Sbjct: 13 SDGTDPEVETTSGESDEQTRDEWTDYEFDGDAKLSV--EDLDVYYGDDHALKGVSMDIPE 70
Query: 62 NQLIAIMGPSGAGKSSLLDVLSGY----RSNGVTGQILTNG---HSRNINAF---RRVSC 111
+ A++GPSG GKS+ L L+ ++ + G + +G + +N +RV
Sbjct: 71 KSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGM 130
Query: 112 YIQQDDRLQPLLTIENV---------------MSLLGLDESQNTRSSQLSGGQKKRLSIA 156
Q + P EN+ LLG D+ +L ++ ++
Sbjct: 131 VFQSPNPF-PKSIRENISYGPRKHGDINTGLLARLLGRDDKD--AEDELVERSLRQAALW 187
Query: 157 LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL 216
E+ N R LD+ Q++RL IA L +P V+ +DEP + LD + S+ L
Sbjct: 188 DEV--NDR---LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDL 242
Query: 217 LKMISQQGRTIICTIHQPSATLFQMFDQV-YLLSGGQCLYQGATDQL 262
++ ++++ ++ T + A ++ DQ L+GG+ + TD++
Sbjct: 243 IEELAEEYTVVVVTHNMQQAA--RISDQTAVFLTGGELVEYDDTDKI 287
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 51.1 bits (123), Expect = 1e-06
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 30/142 (21%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNG---HSRNINAFRRVS-CYIQQDD 117
+++++ G +GAGKS+L+ VLSG Y G+I+ G + NI R I Q+
Sbjct: 32 EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQEL 91
Query: 118 RLQPLLTI-ENV----------------MSL--------LGLDESQNTRSSQLSGGQKKR 152
L L++ EN+ M L L LD + T L GQ++
Sbjct: 92 ALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQL 151
Query: 153 LSIALELINNPRVMFLDEPTTS 174
+ IA L R++ LDEPT S
Sbjct: 152 VEIAKALNKQARLLILDEPTAS 173
Score = 47.6 bits (114), Expect = 1e-05
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 29/179 (16%)
Query: 67 IMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN----AFRRVSCYIQQD---DRL 119
I G GAG++ L+ L G G+I +G I A + + +D D +
Sbjct: 293 IAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGI 352
Query: 120 QPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP--- 176
P++ + ++L LD + T S++ L LE I +V T++P
Sbjct: 353 VPVMGVGKNITLAALD--RFTGGSRIDDA--AELKTILESIQRLKV------KTASPELA 402
Query: 177 -------NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
N QK L+ L L NP+++ LDEPT G+D + + KL+ + QQG II
Sbjct: 403 IARLSGGNQQKAVLAKCLLL--NPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAII 459
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 51.3 bits (123), Expect = 1e-06
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 28/108 (25%)
Query: 143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRV--MFLDE 200
LSGG++ S+AL RL+++ L R+ +FLDE
Sbjct: 814 KTLSGGERFLASLAL------------------------RLALSDLLQGRARLELLFLDE 849
Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248
P LD + + ++L+ + GR II H L + D +
Sbjct: 850 PFGTLDEERLEKLAEILEELLSDGRQIIIISHVEE--LKERADVRIRV 895
Score = 32.8 bits (75), Expect = 0.69
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 61 SNQLIAIMGPSGAGKSSLLD 80
+ + I+GP+GAGKSS+LD
Sbjct: 24 DSGIFLIVGPNGAGKSSILD 43
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 49.6 bits (119), Expect = 1e-06
Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 27/234 (11%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGHSRNINAFR 107
++LK L ++ AIMGP+G+GKS+L V++G+ + + G IL G +I
Sbjct: 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG--ESI---- 73
Query: 108 RVSCYIQQDDR--------LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL 159
++ ++R Q + I V + L + N++ + L LE+
Sbjct: 74 ---LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEF-LEI 129
Query: 160 INNPRVMFLDEPT--TSNPND-----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
IN + +P+ + N N+ +KKR I + + + LDE +GLD +
Sbjct: 130 INEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKI 189
Query: 213 CIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYL 266
+ + + +II H + D V+++ G+ + G + L L
Sbjct: 190 IAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE-LAKEL 242
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 50.6 bits (122), Expect = 1e-06
Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 18/171 (10%)
Query: 66 AIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNIN----AFRRVSCYIQQDDRLQ 120
A++G +GAGKS+L+ +L G Y+ + G+I +G I A R + Q L
Sbjct: 34 ALLGENGAGKSTLMKILFGLYQPDS--GEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLV 91
Query: 121 PLLTI-ENVMSLLGLDESQNTRSSQLSGGQKK--RLSIALELINNPRVMFLDEPTTSNPN 177
P LT+ EN++ LGL+ S+ + + LS L +P D
Sbjct: 92 PTLTVAENII--LGLEPSKGGLID-RRQARARIKELSERYGLPVDP-----DAKVADLSV 143
Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
+++R+ I L R++ LDEPT L Q + ++L+ ++ +G+TII
Sbjct: 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTII 194
Score = 43.7 bits (104), Expect = 3e-04
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 44/228 (19%)
Query: 23 TADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVL 82
T + ++ +DL+ G+ +K++ + +++ I G +G G+S L++ +
Sbjct: 252 TPGEVVLEVEDLSVKDRRGV-------TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAI 304
Query: 83 SGYRSNGVTGQILTNGHS----RNINAFRR--VSCYIQQDDRLQ-----PLLTIENVMSL 131
SG R +G+IL NG + RR ++ Y+ +DR L EN+ +
Sbjct: 305 SGLRK-PASGRILLNGKDVLGRLSPRERRRLGLA-YVP-EDRHGHGLVLDLSLAENL--V 359
Query: 132 LGLDESQNTRSSQLSGGQKKRLSI---ALELINNPRVMFLDEPTTSNPNDQKKRLS---- 184
LG ++ + GG R +I A ELI V +P+ + LS
Sbjct: 360 LG----RHDKKPFSRGGFLDRRAIRKFARELIEEFDVR------APSPDAPARSLSGGNQ 409
Query: 185 ----IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
+A EL P ++ +PT GLD + + L + G+ ++
Sbjct: 410 QKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 48.8 bits (117), Expect = 2e-06
Identities = 44/195 (22%), Positives = 64/195 (32%), Gaps = 65/195 (33%)
Query: 62 NQLIAIMGPSGAGKSSLLDVLS--------GYRSNGVTGQILTNGHSRNINAFRRVSCYI 113
N L I GP+GAGKS++LD ++ Y + G VS
Sbjct: 28 NGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGE-----DTAEVSFTF 82
Query: 114 QQDDRLQPLLTIENVMSLLGLDESQNTRS----------------SQLSGGQKKRLSIAL 157
Q + V GLD Q TR S LSGG+ S++L
Sbjct: 83 QLGGKKY------RVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSL 136
Query: 158 -----ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ 212
E++ N R LE +F+DE LD ++
Sbjct: 137 ALALSEVLQN-------------------RGGARLEA------LFIDEGFGTLDPEALEA 171
Query: 213 CIKLLKMISQQGRTI 227
L++I + R +
Sbjct: 172 VATALELIRTENRMV 186
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 49.6 bits (119), Expect = 2e-06
Identities = 44/189 (23%), Positives = 89/189 (47%), Gaps = 36/189 (19%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRS 87
IK ++++++ + + LKN+ + +AI+G +G+GKS++ +L+G +
Sbjct: 8 IKVENVSFS------YPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP 61
Query: 88 NGVTGQILTNG---HSRNINAFRRVSCYIQQ------------DD--------RLQP--- 121
G+I +G N+ R+ I Q DD ++ P
Sbjct: 62 QS--GEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKM 119
Query: 122 LLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS-NPNDQK 180
I+++ +G+++ + LSGGQK+R++IA L NP ++ DE T+ +P ++
Sbjct: 120 KDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKR 179
Query: 181 KRLSIALEL 189
+ I ++L
Sbjct: 180 EIKKIMVDL 188
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 49.7 bits (119), Expect = 2e-06
Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 46/197 (23%)
Query: 19 TSLETADRIEIKFKDLTYTVST-GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSS 77
T +R I F + +ST L K+ +K + +F N++ A++GPSG+GKS+
Sbjct: 2 TKYNWNERHIITFPEEEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKST 61
Query: 78 LLDVLSGYRSNG------VTGQILTNG---HSRNINAF---RRVSCYIQQDDRLQPLL-T 124
L L+ R N VTGQIL G + + IN + + + Q R P +
Sbjct: 62 YLRSLN--RMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQ---RPNPFAKS 116
Query: 125 I-ENVMSLLG---------LDESQNTRSSQ-----------------LSGGQKKRLSIAL 157
I EN+ L LDE T Q LSGGQ++RL IA
Sbjct: 117 IYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIAR 176
Query: 158 ELINNPRVMFLDEPTTS 174
+ P ++ +DEP ++
Sbjct: 177 AIAVKPDILLMDEPASA 193
Score = 36.2 bits (84), Expect = 0.038
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICT 230
Q++RL IA + P ++ +DEP + LD S Q + + + + II T
Sbjct: 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVT 219
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 49.7 bits (118), Expect = 2e-06
Identities = 50/199 (25%), Positives = 91/199 (45%), Gaps = 19/199 (9%)
Query: 44 FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILT 96
+ K VL +L N++ A +GPSG GKS+ L D++ G G + T
Sbjct: 90 YMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGT 149
Query: 97 NGHSRNINAFR---RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL 153
N S+ I++ R+ Q+ + ++I + ++ + N R +K
Sbjct: 150 NTRSKKISSLELRTRIGMVFQKPTPFE--MSIFDNVAYGPRNNGINDRKILEKIVEKSLK 207
Query: 154 SIAL--ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCS 211
S AL E+ ++ LD+ + Q++RL IA + P V+ +DEPT+ LD + +
Sbjct: 208 SAALWDEVKDD-----LDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
Query: 212 QCIKLLKMISQQGRTIICT 230
+ +L+ + ++ II T
Sbjct: 263 KIEELILELKKKYSIIIVT 281
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 49.2 bits (118), Expect = 2e-06
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 49/175 (28%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHS------------------RNI 103
++++++GP+GAGK+++ + L+G Y+ G G IL G +++
Sbjct: 32 EIVSLIGPNGAGKTTVFNCLTGFYKPTG--GTILLRGQHIEGLPGHQIARMGVVRTFQHV 89
Query: 104 NAFRRVSC----YIQQDDRLQPLL----------------TIENVMSLL---GLDESQNT 140
FR ++ + Q +L+ L ++ + L GL E N
Sbjct: 90 RLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149
Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS-NPNDQKKRLSIALELINNPR 194
++ L+ GQ++RL IA ++ P ++ LDEP NP + K L ELI R
Sbjct: 150 QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPK-ETKELD---ELIAELR 200
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 49.0 bits (117), Expect = 2e-06
Identities = 47/189 (24%), Positives = 86/189 (45%), Gaps = 36/189 (19%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I FK++++ + F LK++ P Q +I+G +G+GKS++ ++ G
Sbjct: 8 IVFKNVSFQYQSDASF------TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV 61
Query: 89 GVTGQILTNGHSRNINAFRRVSCYIQ---QDDRLQPLLTI---------EN--------- 127
+G+I N + + F ++ +I Q+ Q + +I EN
Sbjct: 62 K-SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMH 120
Query: 128 -----VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKR 182
+ + + E + + LSGGQK+R++IA L NP V+ LDE T+ D ++
Sbjct: 121 RRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQN 180
Query: 183 LSIALELIN 191
L L+L+
Sbjct: 181 L---LDLVR 186
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 49.1 bits (117), Expect = 2e-06
Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 25/228 (10%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-----YRSNG--VTGQILTNGHS-RN 102
+L++L R ++ A++G +GAGKS+LL L+G G VTG + NG
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 103 INAFRRVSC----YIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE 158
I+A R++ Q E V LLG R+ L+ + AL
Sbjct: 76 IDA-PRLARLRAVLPQAAQPAFAFSAREIV--LLGR-YPHARRAGALTHRDGEIAWQALA 131
Query: 159 LINNPRVMFLDEPTTSNPNDQKKRLSIAL-------ELINNPRVMFLDEPTTGLDSQSCS 211
L ++ D T S + + + L + PR + LDEPT LD
Sbjct: 132 LAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQH 191
Query: 212 QCIKLLKMISQQGRTIICTI-HQPSATLFQMFDQVYLLSGGQCLYQGA 258
+ + ++ +++ + I H P+ + D++ +L+ G + GA
Sbjct: 192 RLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHGA 238
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 50.0 bits (120), Expect = 3e-06
Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 49/165 (29%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN--------GHSRNINAFR----- 107
+++ I+GP+G GKS+ L +L+G ++ N I FR
Sbjct: 99 PGKVVGILGPNGIGKSTALKILAG--------ELKPNLGRYEDPPSWDEVIKRFRGTELQ 150
Query: 108 -----------RVSCYIQQDDRL--------QPLLT-------IENVMSLLGLDESQNTR 141
R Q D + LL + V+ LGL+ +
Sbjct: 151 NYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRD 210
Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA 186
S+LSGG+ +R++IA L+ + V F DEP++ D ++RL+ A
Sbjct: 211 VSELSGGELQRVAIAAALLRDADVYFFDEPSSY--LDIRQRLNAA 253
Score = 39.2 bits (92), Expect = 0.006
Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 38/138 (27%)
Query: 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSG---------------YR-------SNGVTGQI 94
G ++I I+GP+G GK++ + +L+G Y+ +G +
Sbjct: 362 GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDL 421
Query: 95 LTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS 154
L R+ S Y + + ++ L L++ +LSGG+ +R++
Sbjct: 422 L-----RSAIRSAFGSSYFKTE-----------IVKPLNLEDLLERPVDELSGGELQRVA 465
Query: 155 IALELINNPRVMFLDEPT 172
IA L + LDEP+
Sbjct: 466 IAAALSREADLYLLDEPS 483
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 48.6 bits (116), Expect = 3e-06
Identities = 55/190 (28%), Positives = 80/190 (42%), Gaps = 54/190 (28%)
Query: 23 TADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL--- 79
TA I+++ +D VS G KQ DV ++ P + A +GPSG GKS+ L
Sbjct: 14 TATEIKMRARD----VSVFYGEKQALFDVDLDI----PEKTVTAFIGPSGCGKSTFLRCL 65
Query: 80 ----DVLSGYRSNGVTGQILTNGHSRNINAFR--------RVSCYIQQDD---------- 117
D + G R VTG+I +G +I R RV Q+ +
Sbjct: 66 NRMNDTIDGCR---VTGKITLDGE--DIYDPRLDVVELRARVGMVFQKPNPFPKSIYENV 120
Query: 118 ----RLQPLLT--------IENVMSLLGLDESQNTRSSQ----LSGGQKKRLSIALELIN 161
R+ L +E + GL E R + LSGGQ++RL IA +
Sbjct: 121 AYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAV 180
Query: 162 NPRVMFLDEP 171
+P V+ +DEP
Sbjct: 181 SPEVILMDEP 190
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 49.5 bits (119), Expect = 3e-06
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 35/152 (23%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108
K ++ +L + P ++ ++GP+GAGKS+L ++ TGQ + + I +
Sbjct: 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMI--------TGQEQPDSGTIKIGETVK 386
Query: 109 VSCYIQQDDRLQPLLTIENVMSLLGLDE----------------------SQNTRSSQLS 146
++ Q D L P T+ +S GLD Q + QLS
Sbjct: 387 LAYVDQSRDALDPNKTVWEEISG-GLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLS 445
Query: 147 GGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
GG++ R+ +A L + V+ LDEPT ND
Sbjct: 446 GGERNRVHLAKTLKSGGNVLLLDEPT----ND 473
Score = 41.1 bits (97), Expect = 0.002
Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 48/194 (24%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NINA 105
K++LK++ F I ++G +GAGKS+LL +++G NG +R I
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-------FNGEARPAPGIKV 70
Query: 106 FRRVSCYIQQDDRLQPLLTI-ENVMSLLG-----LDE---------SQNTRSSQLSGGQK 150
Y+ Q+ +L P T+ ENV + LD + L Q
Sbjct: 71 -----GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQA 125
Query: 151 K---------------RLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRV 195
+ +L IA++ + P D T +++R+++ L++ P +
Sbjct: 126 ELQEIIDAADAWDLDRKLEIAMDALRCPP---WDADVTKLSGGERRRVALCRLLLSKPDM 182
Query: 196 MFLDEPTTGLDSQS 209
+ LDEPT LD++S
Sbjct: 183 LLLDEPTNHLDAES 196
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 49.4 bits (118), Expect = 4e-06
Identities = 61/294 (20%), Positives = 117/294 (39%), Gaps = 77/294 (26%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS- 87
I+ K+LT K + K+VLKN+ +++ I+G SGAGKS L+ VL G
Sbjct: 1 IEVKNLTK--------KFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQY 52
Query: 88 NGVTGQILTN-----------------------------------GHSRNI--NAFRRVS 110
+G+I+ + S + +R++
Sbjct: 53 EPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIA 112
Query: 111 CYIQQ------DDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELIN--- 161
+Q+ DD + ++NV+ L ++ K+ + A++LI
Sbjct: 113 IMLQRTFALYGDDTV-----LDNVLEAL----------EEIGYEGKEAVGRAVDLIEMVQ 157
Query: 162 -NPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK-LLKM 219
+ R+ + + +K+R+ +A +L P + DEPT LD Q+ L +
Sbjct: 158 LSHRITHIARDLSGG---EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEA 214
Query: 220 ISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN-YLSSVNLP 272
+ G +++ T H P + + D+ L G+ +G D++V ++ V+
Sbjct: 215 VKASGISMVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVFMEGVSEV 267
Score = 40.9 bits (96), Expect = 0.002
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Query: 128 VMSLLGLDESQ-----NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT-TSNP 176
+ ++G DE + + +LS G++ R+++A LI PR++ LDEPT T +P
Sbjct: 406 TLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDP 460
Score = 34.8 bits (80), Expect = 0.15
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK-LLKMISQQGRTIICTIHQPSAT 237
++ R+++A LI PR++ LDEPT +D + +LK + +T I H
Sbjct: 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFV 491
Query: 238 LFQMFDQVYLLSGGQCLYQGATDQLVNYLS 267
L + D+ L+ G+ + G +++V L+
Sbjct: 492 L-DVCDRAALMRDGKIVKIGDPEEIVEELT 520
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 48.7 bits (116), Expect = 4e-06
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 147 GGQKKRLSIALELINNPRVMFLDEPTTSNPND----QKKRLSIALELINNPRVMFLDEPT 202
G +K+R A+EL++ + + S P + + +++ IA+ L N PR++ DEPT
Sbjct: 130 GWRKRR---AIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPT 186
Query: 203 TGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
++ + +Q +LL ++Q T I I + Q D++ +L GQ + +++L
Sbjct: 187 NSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEEL 246
Query: 263 V 263
V
Sbjct: 247 V 247
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 47.6 bits (113), Expect = 4e-06
Identities = 44/195 (22%), Positives = 90/195 (46%), Gaps = 18/195 (9%)
Query: 42 LGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS- 100
L F + +L+ + P+ L+ + G +GAGK++LL +++G N G+IL S
Sbjct: 7 LDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL-NPEKGEILFERQSI 65
Query: 101 -RNINAFRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE 158
+++ +++ C++ + P LT+ EN + + + + + RL +LE
Sbjct: 66 KKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDI------HFSPGAVGITELCRL-FSLE 118
Query: 159 LINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK 218
+D P + QK+++++ ++ ++ LDEP LD S I ++
Sbjct: 119 -------HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQ 171
Query: 219 MISQQGRTIICTIHQ 233
+G ++ T HQ
Sbjct: 172 EHRAKGGAVLLTSHQ 186
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 48.3 bits (115), Expect = 4e-06
Identities = 62/262 (23%), Positives = 116/262 (44%), Gaps = 30/262 (11%)
Query: 13 SSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSG 72
++ SG ++ I+ +DL + G +Q DV ++ P NQ+ A++GPSG
Sbjct: 24 TTDPSGDPAASSGETVIEARDL----NVFYGDEQALDDVSMDI----PENQVTAMIGPSG 75
Query: 73 AGKSSLL-------DVLSGYRSNGVTGQILTNGHSRNIN--AFRRVSCYIQQDDRLQPLL 123
GKS+ L D++ R G N + +++ A RR + Q P
Sbjct: 76 CGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKS 135
Query: 124 TIENV---MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK 180
+NV + + G D + R + +R ++ E+ + LD Q+
Sbjct: 136 IYDNVAYGLKIQGYDGDIDERVEE----SLRRAALWDEVKDQ-----LDSSGLDLSGGQQ 186
Query: 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ 240
+RL IA + +P V+ +DEP + LD + S+ L++ ++++ +I T + A
Sbjct: 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARIS 246
Query: 241 MFDQVYLLSGGQCLYQGATDQL 262
V+ L+GG+ + TD++
Sbjct: 247 DKTAVF-LTGGELVEFDDTDKI 267
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 47.9 bits (114), Expect = 5e-06
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 39/158 (24%)
Query: 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN------GVTGQILTNG---HS 100
+ +KN+ P ++ A++GPSG GKS++L L+ R N + G++L +G +
Sbjct: 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLN--RMNDLIEGCSLKGRVLFDGTDLYD 84
Query: 101 RNINAF---RRVSCYIQQDDRLQPLLTIENV------------MSLLG---------LDE 136
++ RR+ QQ + P EN+ M L DE
Sbjct: 85 PRVDPVEVRRRIGMVFQQPNPF-PKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE 143
Query: 137 SQ---NTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
+ N LSGGQ++RL IA + P V+ +DEP
Sbjct: 144 CKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEP 181
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 49.1 bits (117), Expect = 6e-06
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 34/176 (19%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKD------------------VLKNLCGRFPSNQLIAIMGP 70
IKFK++T T ++ L K P + VL+NL ++A++G
Sbjct: 358 IKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQ 417
Query: 71 SGAGKSSLLDVLSG---------YRSNGVTGQILTNGHSRNI-----NAFRRVSCYIQQD 116
SGAGK++LL ++ G YR + ++ N S I F V+
Sbjct: 418 SGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLR 477
Query: 117 DRLQPLLTIENVMSLLGL-DESQNTRS-SQLSGGQKKRLSIALELINNPRVMFLDE 170
+ L +++ GL D R S+LS GQK+R +A L P V+ +DE
Sbjct: 478 SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE 533
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 48.0 bits (114), Expect = 6e-06
Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 27/229 (11%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGHS- 100
K + ++ + + A++GPSG GKS+ L D++ RS G +IL G +
Sbjct: 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEG---EILYEGLNI 90
Query: 101 --RNIN--AFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIA 156
NIN RR + Q P N+ L + R S L ++ L+ A
Sbjct: 91 LDSNINVVNLRREIGMVFQKPNPFPKSIYNNITH--ALKYAGERRKSVLDEIVEESLTKA 148
Query: 157 L---ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC 213
E+ + L S Q++RL IA L P V+ LDEP + LD S ++
Sbjct: 149 ALWDEVKDR-----LHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI 203
Query: 214 IKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
+L+ + ++ II T + A ++ D+ G + T+Q+
Sbjct: 204 EELITELKEEYSIIIVTHNMQQA--LRVSDRTAFFLNGDLVEYDQTEQI 250
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 48.1 bits (114), Expect = 7e-06
Identities = 55/256 (21%), Positives = 112/256 (43%), Gaps = 27/256 (10%)
Query: 35 TYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI 94
TY T FK L N F N++ ++G +G+GKS+++ + +G + TGQ
Sbjct: 15 TYAKKTPFEFK-----ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE-TGQT 68
Query: 95 LTNGHS--------RNINAFRRVSCYIQQDDRLQPLL-TIENVMSLLGLDESQNTRSSQL 145
+ ++ + + R+ + Q Q TIE ++ ++ +N + +
Sbjct: 69 IVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAY- 127
Query: 146 SGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205
K++ L+L+ P P + QK+R+++A + + + LDEPT GL
Sbjct: 128 -----KKVPELLKLVQLPEDYVKRSPFELS-GGQKRRVALAGIIAMDGNTLVLDEPTGGL 181
Query: 206 DSQSCSQCIKL-LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL-- 262
D + I L ++ + + II H L ++ D+V ++ G+ + G+ ++
Sbjct: 182 DPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVL-RIADEVIVMHEGKVISIGSPFEIFS 240
Query: 263 -VNYLSSVNLPCPKYH 277
L+ + + PK +
Sbjct: 241 NQELLTKIEIDPPKLY 256
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 47.7 bits (113), Expect = 7e-06
Identities = 58/235 (24%), Positives = 95/235 (40%), Gaps = 43/235 (18%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG----YRSNGVTGQILTNGHSRNI---- 103
LKN+ Q+ A++GPSG GKS+ L + Y N G+I+ + + NI
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 104 ----NAFRRVSCYIQQDDRLQPLLTIENVM-----------SLLGLDESQNTRSSQLSGG 148
R+S Q+ + P ENV S+L R++ L
Sbjct: 92 VDPIEVRMRISMVFQKPNPF-PKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE 150
Query: 149 QKKRL-SIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207
K RL +A L Q++RL IA L +P ++ DEPT+ LD
Sbjct: 151 VKDRLGDLAFNL----------------SGGQQQRLCIARALATDPEILLFDEPTSALDP 194
Query: 208 QSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
+ + +L+ + + +I T + A ++ D + G+ + GATD +
Sbjct: 195 IATASIEELISDLKNKVTILIVTHNMQQAA--RVSDYTAYMYMGELIEFGATDTI 247
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 47.8 bits (114), Expect = 7e-06
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 31/161 (19%)
Query: 41 GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS--NGVT---GQIL 95
GL K + + VL N+ S + +A++G SG GKS+L +L G S G G+ L
Sbjct: 17 GLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPL 76
Query: 96 TNGHSRNINAFRRVSCYIQQD--DRLQPLLTI-----ENVMSLLGLDESQ---------- 138
+ AFRR + QD + P T+ E + LL LD+++
Sbjct: 77 AKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLR 136
Query: 139 ---------NTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
+ R QLSGGQ +R+ +A L P+++ LDE
Sbjct: 137 AVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDE 177
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 47.6 bits (113), Expect = 7e-06
Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 43/165 (26%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNG--- 98
K L ++ N++ A++GPSG GKS+ L D++S + + G++L +G
Sbjct: 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK---IEGEVLLDGKNI 73
Query: 99 HSRNINAF---RRVSCYIQQDDRLQPLLTIENVM---SLLGLDESQ-------------- 138
+ ++++ +RV Q+ + P+ +NV + G+ + +
Sbjct: 74 YDKDVDVVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAA 132
Query: 139 ---------NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
+ +LSGGQ++RL IA + P V+ +DEPT++
Sbjct: 133 LWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSA 177
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 47.6 bits (113), Expect = 1e-05
Identities = 61/292 (20%), Positives = 96/292 (32%), Gaps = 84/292 (28%)
Query: 2 AQVEF----ELSNSLSSSESGTSLETADRI----------EIKFKDLTYT---VSTGLGF 44
AQ+ + + E L AD + I+ KD+ GF
Sbjct: 297 AQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGF 356
Query: 45 KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGH---- 99
P D+ R ++ I+G +G GKS+L + G Y G+IL +G
Sbjct: 357 ALGPIDL------RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ--EGEILLDGAAVSA 408
Query: 100 ----------SRNINAFRRVSCYIQQDDRLQP----------LLTIENVMSLLGLDESQN 139
S F I D+ L I + + + S
Sbjct: 409 DSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTT 468
Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD 199
T LS GQ+KRL++ + + ++ DE DQ + F +
Sbjct: 469 T---ALSTGQQKRLALICAWLEDRPILLFDEWAA----DQDPAF----------KRFFYE 511
Query: 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGG 251
E LL + +QG+TII H F++ DQ+ L+ G
Sbjct: 512 E---------------LLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAG 546
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 47.5 bits (113), Expect = 1e-05
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 34/169 (20%)
Query: 48 PKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN----- 102
P LK++ ++ A++G +GAGKS+L+ VLSG G I N + N
Sbjct: 17 PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP-TKGTITINNINYNKLDHK 75
Query: 103 INAFRRVSCYIQQDDRLQPLLTIEN---------------------------VMSL-LGL 134
+ A + Q+ + L +EN +M L +GL
Sbjct: 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL 135
Query: 135 DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183
+ + + LS K+ L IA L+ + +V+ +DEPT+S N + L
Sbjct: 136 KVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYL 184
Score = 35.9 bits (83), Expect = 0.062
Identities = 41/186 (22%), Positives = 81/186 (43%), Gaps = 32/186 (17%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH----SRNINAFRRVSCYIQQDDR 118
+++ G G+G++ L++ L G G+I NG ++A ++ YI + R
Sbjct: 290 EILGFAGLVGSGRTELMNCLFGVDKR-AGGEIRLNGKDISPRSPLDAVKKGMAYITESRR 348
Query: 119 ---LQPLLTIENVMS------------LLGL-DESQNTRSSQLSGGQKKRLSIALELINN 162
P +I M+ +GL E R+++ Q++ L++ +N
Sbjct: 349 DNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAE---NQRELLALKCHSVNQ 405
Query: 163 PRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ 222
+ S N QK + I+ L P V+ DEPT G+D + ++ K+++ ++
Sbjct: 406 ------NITELSGGNQQK--VLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD 457
Query: 223 QGRTII 228
G+ I+
Sbjct: 458 DGKVIL 463
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 47.1 bits (112), Expect = 1e-05
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ 240
+++ IA+ L N PR++ DEPT ++ + +Q +LL ++Q T I I L Q
Sbjct: 165 QKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQ 224
Query: 241 MFDQVYLLSGGQCLYQGATDQLVN 264
D++ +L GQ + + +LV
Sbjct: 225 WADKINVLYCGQTVETAPSKELVT 248
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 47.3 bits (113), Expect = 2e-05
Identities = 53/193 (27%), Positives = 98/193 (50%), Gaps = 29/193 (15%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
+I+F+++T+T K+ P L+N+ + P+ + +A++G SG+GKS++ ++L+ R
Sbjct: 341 DIEFRNVTFTYPG----KEVP--ALRNINFKIPAGKTVALVGRSGSGKSTIANLLT--RF 392
Query: 88 NGVT-GQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNT----RS 142
+ G+IL +GH ++ + S R Q L +NV L D N R+
Sbjct: 393 YDIDEGEILLDGH--DLRDYTLASL------RNQVALVSQNVH--LFNDTIANNIAYART 442
Query: 143 SQLSGGQ---KKRLSIALELINNPRVMF---LDEPTTSNPNDQKKRLSIALELINNPRVM 196
Q S Q R++ A++ IN + E Q++R++IA L+ + ++
Sbjct: 443 EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPIL 502
Query: 197 FLDEPTTGLDSQS 209
LDE T+ LD++S
Sbjct: 503 ILDEATSALDTES 515
>gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease
component [Defense mechanisms].
Length = 286
Score = 46.5 bits (110), Expect = 2e-05
Identities = 33/205 (16%), Positives = 75/205 (36%), Gaps = 17/205 (8%)
Query: 355 LRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSIL 414
I+ I L+ G+ SG + + L I+ ++ S++ + +
Sbjct: 54 APILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFR 113
Query: 415 IKEHFN----------RWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRF 464
+E R + L V ++ +AG L+ + G P +
Sbjct: 114 EREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFL----LGVPFLGSLL 169
Query: 465 TMFNCTSLLVVFIAQSVGYMVGAVFN--VVNGTFVGPVLVVPMMMFSGFGVSINDIPKYM 522
+ LL++ ++G ++ + + VG +L++P+ SG + +P ++
Sbjct: 170 LLLLLLLLLLLATV-ALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWL 228
Query: 523 RWGSELSYLRYGLEGYVAAIYGLDR 547
+ S ++ L Y ++ G R
Sbjct: 229 QGISYINPLTYAIDALRYVYLGGWR 253
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 46.9 bits (111), Expect = 3e-05
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINN 192
+ +S+LSGGQK+R+SIA +I NP+++ LDE T+S N K + + INN
Sbjct: 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDN---KSEYLVQKTINN 624
Score = 40.4 bits (94), Expect = 0.003
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 145 LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181
LSGGQK+R++IA L+ P+++ LDE T+S ++ +K
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEK 1395
Score = 40.0 bits (93), Expect = 0.004
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQS 209
QK+R+SIA +I NP+++ LDE T+ LD++S
Sbjct: 584 QKQRISIARAIIRNPKILILDEATSSLDNKS 614
Score = 39.2 bits (91), Expect = 0.007
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG-RTIICTIHQ 233
QK+R++IA L+ P+++ LDE T+ LDS S K + I + +TII H+
Sbjct: 1363 QKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 46.1 bits (110), Expect = 4e-05
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 35/153 (22%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFRR-- 108
L +++A++G +GAGKS+++ VL+G Y + G IL G N +
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD--AGSILYLGKEVTFNGPKSSQ 77
Query: 109 ---VSCYIQQDDRLQPLLTI-ENV-------------------------MSLLGLDESQN 139
+ I Q+ L P LTI EN+ ++ L L S +
Sbjct: 78 EAGIGI-IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSD 136
Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
+LS G+++ + IA L +V+ +DEPT
Sbjct: 137 KLVGELSIGEQQMVEIAKVLSFESKVIIMDEPT 169
Score = 39.6 bits (93), Expect = 0.004
Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 33/187 (17%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSGY--RSNGVTGQILTNGHSRNIN----AFRRVSCYIQ 114
+++ + G GAG++ L+ VL G R+ +G + +GH YI
Sbjct: 277 KGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQDGLANGIVYIS 333
Query: 115 QD---DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLS--------IALELINNP 163
+D D L ++++ MSL L GG K I L I P
Sbjct: 334 EDRKRDGLVLGMSVKENMSLTALRYFSRA------GGSLKHADEQQAVSDFIRLFNIKTP 387
Query: 164 RVMFLDEPT--TSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS 221
+++ S N QK ++IA L+ P+V+ LDEPT G+D + + +L+
Sbjct: 388 S---MEQAIGLLSGGNQQK--VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFK 442
Query: 222 QQGRTII 228
+G +II
Sbjct: 443 AEGLSII 449
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 45.5 bits (108), Expect = 5e-05
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 38/140 (27%)
Query: 67 IMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGHSRNINAFR------------RVSCYI 113
+MG SG+GKS+LL ++G N V+ G +L +++ RVS
Sbjct: 55 LMGLSGSGKSTLLRAVNGL--NPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSMVF 112
Query: 114 QQDDRLQPLLTI-ENV---------------------MSLLGLDESQNTRSSQLSGGQKK 151
QQ L P T+ ENV + L+GL + + + +LSGG ++
Sbjct: 113 QQFA-LLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWADRKPGELSGGMQQ 171
Query: 152 RLSIALELINNPRVMFLDEP 171
R+ +A ++ +DEP
Sbjct: 172 RVGLARAFATEAPILLMDEP 191
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 45.4 bits (108), Expect = 5e-05
Identities = 66/240 (27%), Positives = 96/240 (40%), Gaps = 70/240 (29%)
Query: 69 GPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN-INAFRRVSCYIQQDDRLQPLLTIEN 127
GPSG GKS+LL +++G + +G + N + R + Q L P L++
Sbjct: 36 GPSGCGKSTLLRMIAGLE-DITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAE 94
Query: 128 VMS----LLGLDESQ-NTRSSQ-----------------LSGGQKKRLSIALELINNPRV 165
MS L G + + N R +Q LSGGQ++R++I L+ P V
Sbjct: 95 NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 154
Query: 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
LDEP SN L AL RV Q + +L K + GR
Sbjct: 155 FLLDEP-LSN-------LDAAL------RV------------QMRIEISRLHK---RLGR 185
Query: 226 TIICTIH-QPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPAD-FV 283
T+I H Q A + D++ +L G ++ V P YH PA+ FV
Sbjct: 186 TMIYVTHDQVEA--MTLADKIVVLDAG-------------RVAQVGKPLELYHYPANRFV 230
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 44.6 bits (105), Expect = 6e-05
Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 41/161 (25%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNGHSRNIN 104
L N+ + N + A++GPSG GKS+ L D++ G + + G ++ G + N
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK---IEGNVIYEGKNIYSN 79
Query: 105 AF------RRVSCYIQQD--------DRLQPLLTIENVMSLLGLDE-------------- 136
F R++ Q D + I LDE
Sbjct: 80 NFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNE 139
Query: 137 ---SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
NT + LSGGQ++RL IA L P V+ +DEPT++
Sbjct: 140 VKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSA 180
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 44.5 bits (105), Expect = 6e-05
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 26/135 (19%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS----------RNINAF----RR 108
+++ ++G +GAGK++LL L G +G+I+ +G R A RR
Sbjct: 32 EIVTLIGANGAGKTTLLGTLCG-DPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRR 90
Query: 109 VSCYIQQD----------DRLQPLLTIENVMSLLG-LDESQNTRSSQLSGGQKKRLSIAL 157
V + + +R Q I+ V L L E + R+ +SGG+++ L+I
Sbjct: 91 VFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR 150
Query: 158 ELINNPRVMFLDEPT 172
L++ PR++ LDEP+
Sbjct: 151 ALMSQPRLLLLDEPS 165
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 44.3 bits (105), Expect = 7e-05
Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 34/169 (20%)
Query: 41 GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGH- 99
+G+ +L N+ + + I GPSG GKS+LL +++ S +G +L G
Sbjct: 12 NVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP-TSGTLLFEGED 70
Query: 100 --SRNINAFRRVSCYIQQ--------------------DDRLQPLLTIENVMSLLGLDES 137
+ +R+ Y Q + + P + ++++ L ++
Sbjct: 71 ISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERF-ALPDT 129
Query: 138 QNTRS-SQLSGGQKKRLSIALELINN----PRVMFLDEPTTSNPNDQKK 181
T++ ++LSGG+K+R+S LI N P+V+ LDE T++ K
Sbjct: 130 ILTKNIAELSGGEKQRIS----LIRNLQFMPKVLLLDEITSALDESNKH 174
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 44.2 bits (105), Expect = 7e-05
Identities = 57/209 (27%), Positives = 86/209 (41%), Gaps = 46/209 (22%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSC 111
LKN+ P N+L+ I G SG+GKSSL I G R + + +S
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSL-----------AFDTIYAEGQRRYVES---LSA 56
Query: 112 YIQQDDRLQPLLT-----IENVMSLLGLDE---SQNTRSSQLSGGQ---KKRLSIALELI 160
Y +Q L + IE + + +D+ S+N RS+ + + RL A I
Sbjct: 57 YARQ--FLGQMDKPDVDSIEGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGI 114
Query: 161 NNPRVMFLDE------------PTTSNPNDQKKRL--SIALELINNPRVMF-LDEPTTGL 205
R+ FL + PT S Q+ RL I L V++ LDEP+ GL
Sbjct: 115 RE-RLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTG---VLYVLDEPSIGL 170
Query: 206 DSQSCSQCIKLLKMISQQGRTIICTIHQP 234
+ + I+ LK + G T++ H
Sbjct: 171 HPRDNDRLIETLKRLRDLGNTVLVVEHDE 199
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 44.2 bits (104), Expect = 8e-05
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 36/170 (21%)
Query: 39 STGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL------------------- 79
+T L K L ++ + N++ A++G SG GKS+ L
Sbjct: 5 TTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEI 64
Query: 80 --------DVLSGYRSNGVTGQ---ILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENV 128
DV++ ++ G+ Q + NI+ ++ I+ D + L + +
Sbjct: 65 EGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEAL--VVDC 122
Query: 129 MSLLGLDESQNTRSSQ----LSGGQKKRLSIALELINNPRVMFLDEPTTS 174
+ +GL E + Q LSGGQ++RL IA L P+++ LDEPT++
Sbjct: 123 LQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSA 172
Score = 40.0 bits (93), Expect = 0.002
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICT 230
Q++RL IA L P+++ LDEPT+ LD S +LLK +S I+ T
Sbjct: 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVT 198
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 44.3 bits (105), Expect = 9e-05
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 42/154 (27%)
Query: 60 PSNQLIAIMGPSGAGKSSLL-------DVLSGYRSNGVTGQILTNG---HSRNIN--AFR 107
+ A +GPSG GKS++L +V+ G R V G++L +G + ++ A R
Sbjct: 28 EPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR---VEGEVLLDGEDLYGPGVDPVAVR 84
Query: 108 RVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTR------------------------- 141
R + Q P ++I +NV++ L L+ +N +
Sbjct: 85 RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDK 144
Query: 142 -SSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
LSGGQ++RL IA + P V+ +DEP ++
Sbjct: 145 PGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSA 178
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 44.3 bits (105), Expect = 9e-05
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 33/142 (23%)
Query: 63 QLIAIMGPSGAGKS----SLLDVL-SGYRSNGVTGQILTNGHSRNINAFR-RVSCYIQQD 116
+++A++G SG+GKS + L +L +G R G++L +G A R R I Q+
Sbjct: 30 RVLALVGGSGSGKSLTCAAALGILPAGVRQ--TAGRVLLDGKPVAPCALRGRKIATIMQN 87
Query: 117 DR--LQPLLTIEN--------------------VMSLLGLDESQNTRSS---QLSGGQKK 151
R PL T+ + +GL+ + ++SGG +
Sbjct: 88 PRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQ 147
Query: 152 RLSIALELINNPRVMFLDEPTT 173
R+ IAL L+ + DEPTT
Sbjct: 148 RMMIALALLCEAPFIIADEPTT 169
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 42.7 bits (100), Expect = 1e-04
Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 24/129 (18%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQ 120
++I I+GP G+GK++L L+ G I +G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE--------------------- 39
Query: 121 PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK 180
I + L + + SG + RL++AL P V+ LDE T+ +Q+
Sbjct: 40 ---DILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQE 96
Query: 181 KRLSIALEL 189
L + EL
Sbjct: 97 ALLLLLEEL 105
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 43.5 bits (102), Expect = 1e-04
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 33/152 (21%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF----- 106
L N+ R P+ QL I+G G GKSSLL + G + G++ + + + +F
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILG-EMQTLEGKVHWSNKNESEPSFEATRS 75
Query: 107 --RRVSCYIQQDDRLQPLLTIENV-----------------------MSLLGL-DESQ-N 139
R Y Q L EN+ + LL D+++
Sbjct: 76 RNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIG 135
Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
R LSGGQ++R+ +A L N ++FLD+P
Sbjct: 136 ERGINLSGGQRQRICVARALYQNTNIVFLDDP 167
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 44.7 bits (106), Expect = 1e-04
Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 37/203 (18%)
Query: 69 GPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQ-----QDDRLQPLL 123
G GAG++ L + L G R G+I+ NG INA + +DR L
Sbjct: 296 GVVGAGRTELAETLYGLRPA-RGGRIMLNGK--EINALSTAQRLARGLVYLPEDRQSSGL 352
Query: 124 TIE-----NVMSLLGLDESQNTRSSQLSGGQKKR--------LSIALELINNP-RVMFLD 169
++ NV +L N R + ++ L+I R
Sbjct: 353 YLDAPLAWNVCALT-----HNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR----- 402
Query: 170 EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIIC 229
T S N QK ++ LE +P+++ +DEPT G+D + + +L++ I+ Q ++
Sbjct: 403 --TLSGGNQQKVLIAKCLEA--SPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVL- 457
Query: 230 TIHQPSATLFQMFDQVYLLSGGQ 252
I + QM D+V ++ G+
Sbjct: 458 FISSDLEEIEQMADRVLVMHQGE 480
Score = 43.1 bits (102), Expect = 3e-04
Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 20/217 (9%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR---NINAFR 107
VLK + + ++ A++G +GAGKS+L+ +++G +G + G+
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD-SGTLEIGGNPCARLTPAKAH 84
Query: 108 RVSCY-IQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV 165
++ Y + Q+ L P L++ EN+ L GL + Q + +++ L +
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKENI--LFGLPKRQAS---------MQKMKQLLAALGCQ-- 131
Query: 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
+ LD S ++ + I L+ + R++ LDEPT L + ++ + QG
Sbjct: 132 LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGV 191
Query: 226 TIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
I+ H+ + Q+ D++ ++ G G T L
Sbjct: 192 GIVFISHKLP-EIRQLADRISVMRDGTIALSGKTADL 227
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 44.6 bits (106), Expect = 1e-04
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 39/159 (24%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-----YRSNGVT--GQILTNGH-- 99
+ +L NL + + I+GP+GAGKS+LL +++G Y SN +T G+ +G
Sbjct: 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGY-SNDLTLFGRRRGSGETI 331
Query: 100 ----------SRNINAFRRVSC----------------YIQQDDRLQPLLTIENVMSLLG 133
S +++ RVS Y DR Q L + + +LG
Sbjct: 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKL--AQQWLDILG 389
Query: 134 LDESQNTRSSQ-LSGGQKKRLSIALELINNPRVMFLDEP 171
+D+ LS GQ++ I L+ +P ++ LDEP
Sbjct: 390 IDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEP 428
Score = 39.2 bits (92), Expect = 0.005
Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 36/178 (20%)
Query: 66 AIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI 125
A +G +G+GKS+L L+G L +G ++ F ++ L+
Sbjct: 33 AFVGANGSGKSALARALAG-------ELPLLSGERQS--QFSHIT-----------RLSF 72
Query: 126 ENVMSLLGLDESQNTRSSQLSG-----GQKKRLSIALELINNPRVMFLDEP--TTSNPND 178
E + L+ DE Q + LS G+ I E+ + R L + T+ +
Sbjct: 73 EQLQKLVS-DEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDR 131
Query: 179 QKKRLS--------IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
+ K LS + L++ P ++ LDEP GLD S Q +LL + Q G T++
Sbjct: 132 RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLV 189
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 43.7 bits (103), Expect = 1e-04
Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 37/159 (23%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY----RSNGVTGQILTNGH-----SRN 102
LKN+ N++ AI+GPSG GKS+ + L+ S TG+IL S +
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 103 INAFR-RVSCYIQQDDRLQPLLTIENVM--------------------SLLG------LD 135
+ R V Q+ + P +NV SL G L
Sbjct: 100 VEELRTNVGMVFQKPNPF-PKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK 158
Query: 136 ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
+ + + LSGGQ++RL IA L P V+ +DEPT++
Sbjct: 159 DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSA 197
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 44.1 bits (105), Expect = 1e-04
Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 56/184 (30%)
Query: 49 KDVLKNLCGRFP----------SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTN 97
+ V K+ G+ + I ++GPSG GKS+LL +++G +T G+I
Sbjct: 7 QAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIG 64
Query: 98 GHSRNINAFRRVSCYIQQDDR----------LQPLLTIENVMS----------------- 130
G R +N ++ DR L P +++ M+
Sbjct: 65 G--RVVNE-------LEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERV 115
Query: 131 -----LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSI 185
+L L+ + + +LSGGQ++R+++ ++ P V DEP SN D K R+ +
Sbjct: 116 AEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP-LSNL-DAKLRVQM 173
Query: 186 ALEL 189
LE+
Sbjct: 174 RLEI 177
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 44.4 bits (105), Expect = 2e-04
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 12/134 (8%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQI-LTNG------HSRNINAFRRVSCYIQQDD 117
I ++G +GAGKS+L+ +L+G V+G+I L G + R +Q
Sbjct: 341 IGLLGRNGAGKSTLIKLLAG-ELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLA 399
Query: 118 RLQPLLTIENVMSLLGLDESQNTR----SSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
RL P + + LG Q + + + SGG+K RL +AL + P ++ LDEPT
Sbjct: 400 RLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTN 459
Query: 174 SNPNDQKKRLSIAL 187
D ++ L+ AL
Sbjct: 460 HLDLDMRQALTEAL 473
Score = 33.6 bits (77), Expect = 0.38
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 132 LGLDESQNTRS-SQLSGGQKKRLSIALELINNPRVMFLDEPT 172
LG Q R S SGG + RL++A LI ++ LDEPT
Sbjct: 136 LGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPT 177
Score = 31.3 bits (71), Expect = 1.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 170 EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206
E T +K RL +AL + P ++ LDEPT LD
Sbjct: 426 EETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 43.2 bits (102), Expect = 2e-04
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 33/165 (20%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108
+ VL ++ +++ ++GP+GAGKS+L+ V+ G + G I NG R I
Sbjct: 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD-EGVIKRNGKLR-IG---- 70
Query: 109 VSCYIQQDDRLQPL--LTIENVMSLLG----------LDESQ-----NTRSSQLSGGQKK 151
Y+ Q L LT+ + L L Q + +LSGG+ +
Sbjct: 71 ---YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQ 127
Query: 152 RLSIALELINNPRVMFLDEPTTS-NPNDQKKRLSIAL-ELINNPR 194
R+ +A L+N P+++ LDEPT + N Q +AL +LI+ R
Sbjct: 128 RVLLARALLNRPQLLVLDEPTQGVDVNGQ-----VALYDLIDQLR 167
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 44.0 bits (105), Expect = 2e-04
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 54/177 (30%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN--GHSRN------INAFR------- 107
++ I+GP+G GK++ + +LSG +++ N + + FR
Sbjct: 100 KVTGILGPNGIGKTTAVKILSG--------ELIPNLGDYEEEPSWDEVLKRFRGTELQNY 151
Query: 108 ---------RVSCYIQQDDRLQP---------LLT-------IENVMSLLGLDESQNTRS 142
+V Q D + P LL ++ V+ LGL+ +
Sbjct: 152 FKKLYNGEIKVVHKPQYVDLI-PKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDI 210
Query: 143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL---ELINNPRVM 196
S+LSGG+ +R++IA L+ + F DEPT+ D ++RL++A EL V+
Sbjct: 211 SELSGGELQRVAIAAALLRDADFYFFDEPTSY--LDIRQRLNVARLIRELAEGKYVL 265
Score = 32.1 bits (74), Expect = 1.1
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 26/124 (20%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSC---YIQ--QDDRL 119
I I+GP+G GK++ +L+G G++ ++S YI+ D +
Sbjct: 368 IGIVGPNGIGKTTFAKLLAG-VLKPDEGEVDPE---------LKISYKPQYIKPDYDGTV 417
Query: 120 QPLLT-----------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFL 168
+ LL ++ L L+ + LSGG+ +R++IA L + + L
Sbjct: 418 EDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLL 477
Query: 169 DEPT 172
DEP+
Sbjct: 478 DEPS 481
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 43.7 bits (103), Expect = 2e-04
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 20/123 (16%)
Query: 65 IAIMGPSGAGKSSLLDVLSG---------YRSNGVTGQILTNGHSRNINAFRRVSCYIQQ 115
IA++GP+G GKS++L ++SG +RS V + + H ++ Y+ +
Sbjct: 538 IAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMR 597
Query: 116 ------DDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLD 169
+ +L+ L V L L + T LSGGQK R++ A P ++ LD
Sbjct: 598 CFPGVPEQKLRAHLGSFGVTGNLAL-QPMYT----LSGGQKSRVAFAKITFKKPHILLLD 652
Query: 170 EPT 172
EP+
Sbjct: 653 EPS 655
Score = 34.8 bits (80), Expect = 0.14
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 136 ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
E Q + SGG + R+++A L P ++ LDEPT
Sbjct: 336 EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPT 372
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 43.7 bits (103), Expect = 3e-04
Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 39/240 (16%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVS 110
VLKN+ + QL+A+ G +G+GKSSLL ++ G G+I +G R+S
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS-EGKIKHSG---------RIS 490
Query: 111 CYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
+ Q + P +N++ L DE + T S + Q L + L L E
Sbjct: 491 -FSPQTSWIMPGTIKDNIIFGLSYDEYRYT--SVIKACQ---LEEDIALFPEKDKTVLGE 544
Query: 171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS-------QSCSQCIKLLKMISQQ 223
+ Q+ R+S+A + + + LD P T LD +SC L K++S +
Sbjct: 545 GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESC-----LCKLMSNK 599
Query: 224 GRTIICTI--HQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNY---LSSVNLPCPKYHN 278
R ++ + H A D++ LL G C + G +L SS+ L + N
Sbjct: 600 TRILVTSKLEHLKKA------DKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDN 653
Score = 29.5 bits (66), Expect = 6.5
Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 36/153 (23%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVL------------SGYRSNGVTGQ----- 93
VL++L Q + ++G +G+GKS+LL L G N VT Q
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKA 1293
Query: 94 ---------ILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLL-----GLDESQN 139
I + +N++ + + S D+ + + + S++ LD
Sbjct: 1294 FGVIPQKVFIFSGTFRKNLDPYEQWS-----DEEIWKVAEEVGLKSVIEQFPDKLDFVLV 1348
Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
LS G K+ + +A +++ +++ LDEP+
Sbjct: 1349 DGGYVLSNGHKQLMCLARSILSKAKILLLDEPS 1381
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 42.5 bits (100), Expect = 3e-04
Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 40/168 (23%)
Query: 43 GFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL---DVLSGYRSN-GVTGQILTNG 98
G KQ D+ ++ R ++ A +GPSG GKS+ L + ++ + N V G++ +G
Sbjct: 16 GSKQILFDINLDIYKR----EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDG 71
Query: 99 ---HSRNINAF---RRVSCYIQQDD--------------RLQPLL--------TIENVMS 130
+S + N +V Q+ + +L L +E ++
Sbjct: 72 IDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLT 131
Query: 131 LLGLDESQNTR----SSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
+GL E R + +LSGGQ++RL IA + P ++ +DEP ++
Sbjct: 132 SVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSA 179
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 42.7 bits (100), Expect = 3e-04
Identities = 51/207 (24%), Positives = 83/207 (40%), Gaps = 51/207 (24%)
Query: 62 NQLIAIMGPSGAGKSSLL-------DVLSGYRSNG---VTGQILTNGHSRNINAFRRVSC 111
N++ +GPSG GKS++L D++ G+R G GQ + + R +
Sbjct: 34 NEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGM 93
Query: 112 YIQQDDRLQPLLTIENVMSLLGL---------------------DESQNTRSSQ---LSG 147
QQ + + +NV L L DE ++ LSG
Sbjct: 94 VFQQPNPFS-MSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSG 152
Query: 148 GQKKRLSIALELINNPRVMFLDEPTTS-NPNDQKKRLSIALELINNPRVMFLDEPTTGLD 206
GQ++RL IA + P V+ LDEP ++ +P ++ + +EL + T L
Sbjct: 153 GQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK--------DYTIALV 204
Query: 207 SQSCSQCIKLLKM-------ISQQGRT 226
+ + Q I++ ISQ RT
Sbjct: 205 THNMQQAIRVADTTAFFSVDISQGTRT 231
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 43.3 bits (102), Expect = 3e-04
Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 26/197 (13%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGH---SRNINAFRRVSCYIQQDDR 118
+L+ ++G +G+GKS+L +L+G Y+ +G+IL +G + + +R++ + D
Sbjct: 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQ--SGEILLDGKPVSAEQLEDYRKLFSAVFSDYH 407
Query: 119 LQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALEL-INNPRVMFLDEPTTSNPN 177
L LLG + S QL +RL +A + +N+ R L T
Sbjct: 408 LFD--------QLLGPE---GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLST----- 451
Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIK-LLKMISQQGRTIICTIHQPSA 236
QKKRL++ L L+ ++ LDE D + + LL ++ +QG+TI H
Sbjct: 452 GQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH- 510
Query: 237 TLFQMFDQVYLLSGGQC 253
F D++ + GQ
Sbjct: 511 -YFIHADRLLEMRNGQL 526
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 42.1 bits (99), Expect = 4e-04
Identities = 45/163 (27%), Positives = 64/163 (39%), Gaps = 42/163 (25%)
Query: 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGH------ 99
E K +L+ L ++ AIMGP+G+GKS+L L+G VT G + G
Sbjct: 12 EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELS 71
Query: 100 ----------------------------SRNINAFRRVSCYIQQD--DRLQPLLTIENVM 129
+NA R Y Q+ DR +E +
Sbjct: 72 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRS---YRGQEPLDRFDFQDLMEEKI 128
Query: 130 SLLGLDESQNTRSSQL--SGGQKKRLSIALELINNPRVMFLDE 170
+LL + E TRS + SGG+KKR I + P + LDE
Sbjct: 129 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE 171
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 42.5 bits (100), Expect = 6e-04
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 168 LDEPTTSNPNDQKKRLSIALELIN---NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG 224
L P +S + +RL +A EL+ P + LDEPTTGL + I +L+ ++ QG
Sbjct: 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQG 862
Query: 225 RTIICTIH 232
T++ H
Sbjct: 863 HTVVIIEH 870
Score = 34.0 bits (78), Expect = 0.30
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLD 80
LK+L P +L + G SG+GKSSL++
Sbjct: 611 LKDLTISLPLGRLTVVTGVSGSGKSSLIN 639
Score = 31.7 bits (72), Expect = 1.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 193 PRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP 234
P + LDE T LD+Q S + L+ + G ++I H P
Sbjct: 1721 PTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP 1762
Score = 31.7 bits (72), Expect = 1.5
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLL-DVL 82
LK++ P N L A+ GPS +GK SL+ D+L
Sbjct: 951 LKHIDLSLPRNALTAVTGPSASGKHSLVFDIL 982
Score = 30.2 bits (68), Expect = 4.2
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 24/86 (27%)
Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQ--------------PSATLFQMFD 243
LDEP+ GL Q + I ++K + QG T++ H P A +F
Sbjct: 502 LDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQMISLADRIIDIGPGAGIF---- 557
Query: 244 QVYLLSGGQCLYQGATDQLVNYLSSV 269
GG+ L+ G+ + + S+
Sbjct: 558 ------GGEVLFNGSPREFLAKSDSL 577
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 40.6 bits (95), Expect = 7e-04
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 38/130 (29%)
Query: 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQD 116
G ++I I+GP+G GK++ + +L+G Q++ NG D
Sbjct: 20 GVVKEGEVIGIVGPNGTGKTTAVKILAG--------QLIPNG-----------------D 54
Query: 117 DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
+ +T + LSGG+ +R++IA L+ N DEP S
Sbjct: 55 NDEWDGITP-----------VYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEP--SAY 101
Query: 177 NDQKKRLSIA 186
D ++RL+ A
Sbjct: 102 LDIEQRLNAA 111
Score = 31.8 bits (72), Expect = 0.63
Identities = 16/70 (22%), Positives = 35/70 (50%)
Query: 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ 240
+R++IA L+ N DEP+ LD + + ++ +S++G+ + A L
Sbjct: 78 QRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137
Query: 241 MFDQVYLLSG 250
+ D++++ G
Sbjct: 138 LSDRIHVFEG 147
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 41.3 bits (96), Expect = 7e-04
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235
L L + ++ +DEP GL + + ++LLK +S++G +I T H P
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPL 253
Score = 34.0 bits (77), Expect = 0.17
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRV 109
L I+GP+G+GKS+LL L+ G L G + I +
Sbjct: 1 LNVIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFL 46
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 40.8 bits (96), Expect = 0.001
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 33/155 (21%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSG--------YRSNG--------VTGQILTNGHSRNINAF 106
Q++ ++GP+G GKS+ L +L+G + G L N ++ +
Sbjct: 27 QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGD 86
Query: 107 RRVSCYIQQDDRL--------QPLLT-------IENVMSLLGLDESQNTRSSQLSGGQKK 151
+V Q D + LL ++ ++ L L + QLSGG+ +
Sbjct: 87 VKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQ 146
Query: 152 RLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIA 186
R++IA L + F DEP S+ D K+RL+ A
Sbjct: 147 RVAIAAALARDADFYFFDEP--SSYLDIKQRLNAA 179
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 41.9 bits (98), Expect = 0.001
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 24/134 (17%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRL 119
P L+A++G G GKSSLL L + V G + G A+ +IQ D
Sbjct: 662 PEGALVAVVGQVGCGKSSLLSALLA-EMDKVEGHVHMKGSV----AYVPQQAWIQNDSLR 716
Query: 120 QPLL------------TIE------NVMSLLGLDESQ-NTRSSQLSGGQKKRLSIALELI 160
+ +L +E ++ L D ++ + LSGGQK+R+S+A +
Sbjct: 717 ENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY 776
Query: 161 NNPRVMFLDEPTTS 174
+N + D+P ++
Sbjct: 777 SNADIYLFDDPLSA 790
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 39.5 bits (93), Expect = 0.001
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 34 LTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG 84
L + TG E + LK L + + G SG GKS+LL+ L
Sbjct: 16 LVVSAKTG-----EGIEELKPLL----KGKTSVLAGQSGVGKSTLLNALLP 57
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 40.8 bits (95), Expect = 0.002
Identities = 50/215 (23%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG------HSRNINAFRRVS-CYIQQ 115
++ IMG SG+GKS+++ +L+ GQ+L +G + RR + Q
Sbjct: 55 EIFVIMGLSGSGKSTMVRLLNRL-IEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQ 113
Query: 116 DDRLQPLLTIENVMSLLGLDESQNTRSSQLSG-GQKKRLSIALELINNPRVMFLDEPTTS 174
L P +T+ LD + +L+G ++R AL+ + R + L+ S
Sbjct: 114 SFALMPHMTV--------LDNT--AFGMELAGINAEERREKALDAL---RQVGLENYAHS 160
Query: 175 NPND----QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCI-KLLKMISQQGRTIIC 229
P++ ++R+ +A L NP ++ +DE + LD ++ +L+K+ ++ RTI+
Sbjct: 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVF 220
Query: 230 TIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
H + ++ D++ ++ G+ + G D+++N
Sbjct: 221 ISHDLDEAM-RIGDRIAIMQNGEVVQVGTPDEILN 254
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 41.3 bits (97), Expect = 0.002
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 24/147 (16%)
Query: 44 FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY-----------RSNGVTG 92
F+ EPK +L+++ P +L ++G +G+GKS+LL L RS
Sbjct: 668 FELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVP 727
Query: 93 Q---ILTNGHSRNINAFRRVSCYIQQDDRLQPLL---TIENVMSLL--GLDESQNTRSSQ 144
Q I+ NI F + RL + +E ++ L GL+ +
Sbjct: 728 QQAWIMNATVRGNILFFDE-----EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVN 782
Query: 145 LSGGQKKRLSIALELINNPRVMFLDEP 171
LSGGQK R+S+A + N V LD+P
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDP 809
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 40.9 bits (96), Expect = 0.002
Identities = 59/267 (22%), Positives = 119/267 (44%), Gaps = 52/267 (19%)
Query: 66 AIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFRR-----VSCYIQQDDRL 119
A+MG +GAGKS+LL L G Y+ + +G IL G + + + +S Q+ +
Sbjct: 28 ALMGENGAGKSTLLKCLFGIYQKD--SGSILFQGKEIDFKSSKEALENGISMVHQELN-- 83
Query: 120 QPLLTIENVMSLLGL----------DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLD 169
L+ +VM + L D+ + R + K + L++ +PR
Sbjct: 84 --LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDT-------KAIFDELDIDIDPRAKVAT 134
Query: 170 EPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIIC 229
+ Q + + IA N +++ +DEPT+ L + + +++ + ++G I+
Sbjct: 135 LSVS-----QMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVY 189
Query: 230 TIHQPSATLFQMFDQVYLLSGGQCL----YQGAT-DQLVNYLSSVNL----PCPKYHNPA 280
H+ +FQ+ D++ +L GQ + G T D+++ + +L P K + P
Sbjct: 190 ISHK-MEEIFQLCDEITILRDGQWIATQPLAGLTMDKIIAMMVGRSLTQRFP-DKENKPG 247
Query: 281 DFVIELASGEYGVDNINAMVEQAQNDV 307
+ ++E V N+ ++ + + DV
Sbjct: 248 EVILE-------VRNLTSLRQPSIRDV 267
Score = 33.5 bits (77), Expect = 0.31
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 137 SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
T+ LSGG ++++ I L+ P ++ LDEPT
Sbjct: 384 GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT 419
Score = 31.6 bits (72), Expect = 1.2
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQ 233
S N QK + I L+ P ++ LDEPT G+D + + +L+ ++++ + II I
Sbjct: 393 SGGNQQK--VIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGII-IISS 449
Query: 234 PSATLFQMFDQVYLLSGGQ 252
L + D++ ++S G
Sbjct: 450 EMPELLGITDRILVMSNGL 468
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 40.6 bits (95), Expect = 0.002
Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 40/214 (18%)
Query: 30 KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNG 89
K KDL + G E L N+ P +++ I+G +G+GKS+L SN
Sbjct: 23 KLKDLFFRSKDG-----EYHYALNNISFEVPEGEIVGIIGLNGSGKSTL--------SNL 69
Query: 90 VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT-IENVMSLLGLDESQNTRSSQLSGG 148
+ G + N + +I + I L LT IEN+ L GL + G
Sbjct: 70 IAGVTMPNKGTVDIKG---SAALIAISSGLNGQLTGIENI-ELKGL----------MMGL 115
Query: 149 QKKRLSIALELINNPRVM-------FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201
K+++ E+I P ++ F+ +P + + K RL A+ + NP ++ +DE
Sbjct: 116 TKEKIK---EII--PEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEA 170
Query: 202 TTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPS 235
+ D +C+ + +QG+TI H S
Sbjct: 171 LSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 40.3 bits (95), Expect = 0.002
Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 37/196 (18%)
Query: 1 MAQVEFELSNSLSSSESGTSLETADRI----EIKFKDLTYTVSTGLGFKQEPKDV-LKNL 55
AQV F N L+ + ++ +++T+ GF P ++ +K
Sbjct: 291 SAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQDN-GFSVGPINLTIKR- 348
Query: 56 CGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNG---HSRNINAFRRVSC 111
+L+ ++G +G+GKS+L +L+G Y+ +G+IL +G + +R++
Sbjct: 349 ------GELLFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKPVTAEQPEDYRKLFS 400
Query: 112 YIQQD----DRLQ--------PLLTIENVMSLLGLDES---QNTRSS--QLSGGQKKRLS 154
+ D D+L P L +E + L + ++ R S +LS GQKKRL+
Sbjct: 401 AVFTDFHLFDQLLGPEGKPANPAL-VEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLA 459
Query: 155 IALELINNPRVMFLDE 170
+ L L ++ LDE
Sbjct: 460 LLLALAEERDILLLDE 475
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 39.7 bits (93), Expect = 0.003
Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 16/128 (12%)
Query: 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQD 116
G +++I I+GP+G GK++ + +L+G G I + +++ +
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAG-VLKPDEGDIEIELDTV---SYKPQYIKADYE 75
Query: 117 DRLQPLLT------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPR 164
++ LL+ + L +++ + +LSGG+ +R++IA L +
Sbjct: 76 GTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDAD 135
Query: 165 VMFLDEPT 172
+ LDEP+
Sbjct: 136 IYLLDEPS 143
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 39.5 bits (93), Expect = 0.003
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLL-DVL 82
LKN+ P L + G SG+GKSSL+ D L
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTL 42
Score = 31.8 bits (73), Expect = 0.78
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 27/92 (29%)
Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201
++ LSGG+ +R+ +A EL S K L I LDEP
Sbjct: 167 ATTLSGGEAQRIKLAKEL--------------SKR-STGKTLYI------------LDEP 199
Query: 202 TTGLDSQSCSQCIKLLKMISQQGRTIICTIHQ 233
TTGL + +++L+ + +G T++ H
Sbjct: 200 TTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHN 231
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 39.7 bits (92), Expect = 0.003
Identities = 48/230 (20%), Positives = 102/230 (44%), Gaps = 21/230 (9%)
Query: 42 LGFKQEPKDVLKNLCG---RFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN-----GVTGQ 93
L FK E + + L G + ++I+G +G+GKS+ ++ G + G+
Sbjct: 10 LVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGE 69
Query: 94 ILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL 153
+LT + N+ R++ Q D T+E+ ++ G++ R + KR+
Sbjct: 70 LLTAENVWNLR--RKIGMVFQNPDNQFVGATVEDDVAF-GMENQGIPREEMI-----KRV 121
Query: 154 SIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC 213
AL +N + F QK+R+++A + P ++ LDE T+ LD +
Sbjct: 122 DEALLAVN--MLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179
Query: 214 IKLLKMISQQGR-TIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
++++ I ++ + T++ H D++ ++ G+ + + A +L
Sbjct: 180 MRVIHEIKEKYQLTVLSITHDLDEAASS--DRILVMKAGEIIKEAAPSEL 227
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 39.3 bits (92), Expect = 0.004
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184
+ + L+G+ + + ++LSGGQK+R++IA + P+++ LDE T+ D + R
Sbjct: 121 VNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSM--LDPEGR-- 176
Query: 185 IALELIN 191
LELI
Sbjct: 177 --LELIK 181
Score = 37.4 bits (87), Expect = 0.017
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 24/178 (13%)
Query: 65 IAIMGPSGAGKSS---LLDVLSGYRSNGVTGQILTNGH---SRNINAFRR-VSCYIQQDD 117
++I+G +G+GKS+ L+D L S GQI+ +G N+ R + Q D
Sbjct: 36 LSIIGHNGSGKSTTVRLIDGLLEAES----GQIIIDGDLLTEENVWDIRHKIGMVFQNPD 91
Query: 118 RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM--FLDEPTTSN 175
T+E+ ++ GL E++ ++ K+R++ ALEL+ M F +
Sbjct: 92 NQFVGATVEDDVAF-GL-ENKGIPHEEM----KERVNEALELVG----MQDFKEREPARL 141
Query: 176 PNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIH 232
QK+R++IA + P+++ LDE T+ LD + + IK +K I T+I H
Sbjct: 142 SGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH 199
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 39.9 bits (94), Expect = 0.004
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSL 78
LKN+ P N+L+ I G SG+GKSSL
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSL 42
Score = 38.3 bits (90), Expect = 0.013
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLL-DVL 82
LKN+ P + G SG+GKS+L+ D L
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLINDTL 648
Score = 34.5 bits (80), Expect = 0.20
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 27/87 (31%)
Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201
++ LSGG+ +R+ +A EL K+ + LDEP
Sbjct: 820 ATTLSGGEAQRVKLAKEL-------------------SKRS--------TGKTLYILDEP 852
Query: 202 TTGLDSQSCSQCIKLLKMISQQGRTII 228
TTGL + +++L + +G T+I
Sbjct: 853 TTGLHFDDIKKLLEVLHRLVDKGNTVI 879
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 38.5 bits (91), Expect = 0.005
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 16/78 (20%)
Query: 22 ETADRIEIKFKDLTYTV-----STGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKS 76
E + +EI ++ L Y V TG G D L+ L + ++G SG GKS
Sbjct: 50 ELEELLEI-YEKLGYPVLAVSAKTGEG-----LDELRELL----KGKTSVLVGQSGVGKS 99
Query: 77 SLLDVLSGYRSNGVTGQI 94
+LL+ L TG+I
Sbjct: 100 TLLNALLP-ELVLATGEI 116
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 38.8 bits (91), Expect = 0.005
Identities = 40/172 (23%), Positives = 79/172 (45%), Gaps = 35/172 (20%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY--- 85
I+ + +++ + LK++ + +AI+G +G+GKS+L +L+G
Sbjct: 6 IRVEHISFR------YPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP 59
Query: 86 RSNGVT--GQILTNGHSRNINAFRRVSCYIQ-----------QDD-----------RLQP 121
+ +T G +L+ ++ R+V Q QDD R +
Sbjct: 60 EAGTITVGGMVLSEETVWDVR--RQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEM 117
Query: 122 LLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
+ ++ + +G+++ N +LSGGQK+R++IA L P ++ LDE T+
Sbjct: 118 VERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATS 169
>gnl|CDD|226232 COG3709, COG3709, Uncharacterized component of phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 192
Score = 38.1 bits (89), Expect = 0.005
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 58 RFPSNQLIAIMGPSGAGKSSLLD 80
R +LIA++GPSGAGK +LLD
Sbjct: 1 RTFMGRLIAVVGPSGAGKDTLLD 23
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 39.4 bits (92), Expect = 0.006
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 59 FPSNQLIAIMGPSGAGKSSLLD 80
F SN L AI GP+GAGK++LLD
Sbjct: 27 FASNGLFAITGPTGAGKTTLLD 48
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 38.8 bits (91), Expect = 0.007
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG 84
E DVL + +A++G SG GKS+L++ L G
Sbjct: 183 EGLDVLAAWLS---GGKTVALLGSSGVGKSTLVNALLG 217
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 38.3 bits (89), Expect = 0.007
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 145 LSGGQKKRLSIALELINNPRVMFLDEPTTS 174
LSGGQ++RL +A L P ++ LDEPT++
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSA 212
Score = 36.4 bits (84), Expect = 0.032
Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 48/244 (19%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGV------TGQILTNGH------SRNINAFRR 108
S + AI+GPSG GKS+ L ++ R N + TG ++ +G + + ++
Sbjct: 64 SKYVTAIIGPSGCGKSTFLRAIN--RMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKK 121
Query: 109 VSCYIQQDDRLQPLLTIENVM---SLLGLDESQNTRSSQLSGGQKKRL-SIALELINNPR 164
+ Q+ + P +N+ L G+++ + QL +K L AL + R
Sbjct: 122 IGMVFQKPNPF-PKSIFDNIAYGPRLHGINDKK-----QLEEIVEKSLRKAALWDEVSDR 175
Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG 224
LD+ Q++RL +A L P ++ LDEPT+ LD ++ ++ L++ +
Sbjct: 176 ---LDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY 232
Query: 225 RTIICTIHQPSATL---FQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPAD 281
+I T + A+ + MF Y+G LV + + L + NP D
Sbjct: 233 TIMIVTHNMQQASRVSDYTMF-----------FYEGV---LVEHAPTAQL----FTNPKD 274
Query: 282 FVIE 285
+ E
Sbjct: 275 RMTE 278
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 38.9 bits (92), Expect = 0.007
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 35/148 (23%)
Query: 53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCY 112
+L P ++ I+GP+GAGKS+L ++ TGQ + + I +++
Sbjct: 341 DDLSFSLPPGGIVGIIGPNGAGKSTLFKMI--------TGQEQPDSGTIKIGETVKLAYV 392
Query: 113 IQQDDRLQPLLTIENVMSLLGLDE----------------------SQNTRSSQLSGGQK 150
Q D L P T+ +S GLD Q + LSGG++
Sbjct: 393 DQSRDALDPNKTVWEEISG-GLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGER 451
Query: 151 KRLSIALELINNPRVMFLDEPTTSNPND 178
RL +A L V+ LDEPT ND
Sbjct: 452 NRLHLAKTLKQGGNVLLLDEPT----ND 475
Score = 33.6 bits (78), Expect = 0.35
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 143 SQLSGGQKKRLSIALELINNPRVMFLDEPT 172
++LSGG+++R+++ L+ P ++ LDEPT
Sbjct: 162 TKLSGGERRRVALCRLLLEKPDMLLLDEPT 191
Score = 32.0 bits (74), Expect = 0.92
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 65 IAIMGPSGAGKSSLLDVLSG 84
I ++G +GAGKS+LL +++G
Sbjct: 36 IGVLGLNGAGKSTLLRIMAG 55
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 38.2 bits (89), Expect = 0.010
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 144 QLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
QLSGG +R+ IA+ + P+++ DEPTT+
Sbjct: 153 QLSGGMSQRVMIAMAIACRPKLLIADEPTTA 183
Score = 36.6 bits (85), Expect = 0.027
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 181 KRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQ 240
+R+ IA+ + P+++ DEPTT LD +Q I+LL + Q+ + I A + +
Sbjct: 160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAE 219
Query: 241 MFDQVYLLSGGQCLYQGATDQL 262
++ ++ GQ + G +
Sbjct: 220 AAHKIIVMYAGQVVETGKAHDI 241
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 38.0 bits (89), Expect = 0.010
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 146 SGGQKKRLSIALELINNPRVMFLDEPT 172
SGGQ++R++IA L+ +P V+ DEP
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPV 182
Score = 34.9 bits (81), Expect = 0.10
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ 223
Q++R++IA L+ +P V+ DEP + LD +Q + L+ M QQ
Sbjct: 159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLM-MDLQQ 202
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 38.5 bits (90), Expect = 0.011
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLL-DVL 82
LKN+ P I G SG+GKS+L+ D L
Sbjct: 624 LKNITVSIPLGLFTCITGVSGSGKSTLINDTL 655
Score = 37.7 bits (88), Expect = 0.020
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSL 78
LKN+ P ++L+ I G SG+GKSSL
Sbjct: 12 LKNIDVEIPRDKLVVITGLSGSGKSSL 38
Score = 33.8 bits (78), Expect = 0.33
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 27/88 (30%)
Query: 145 LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTG 204
LSGG+ +R+ +A EL K+ + LDEPTTG
Sbjct: 830 LSGGEAQRIKLAKEL-------------------SKR--------STGRTLYILDEPTTG 862
Query: 205 LDSQSCSQCIKLLKMISQQGRTIICTIH 232
L + +++L+ + +G T++ H
Sbjct: 863 LHFDDIKKLLEVLQRLVDKGNTVVVIEH 890
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 38.8 bits (90), Expect = 0.011
Identities = 45/214 (21%), Positives = 89/214 (41%), Gaps = 17/214 (7%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108
K L ++ P L+AI+G +G GK+SL+ + G S+ T ++ G
Sbjct: 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRG---------- 679
Query: 109 VSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFL 168
Y+ Q + EN++ + + R+ ++ Q L+L+ + +
Sbjct: 680 SVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHD-----LDLLPGRDLTEI 734
Query: 169 DEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
E + QK+R+S+A + +N + D+P + LD+ Q +G+T +
Sbjct: 735 GERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRV 794
Query: 229 CTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
+Q + D++ L+S G +G +L
Sbjct: 795 LVTNQ--LHFLPLMDRIILVSEGMIKEEGTFAEL 826
Score = 37.3 bits (86), Expect = 0.025
Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 37/175 (21%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
IKF+D+ L ++ VL L ++ + ++G +GAGKSS+L+ L +R
Sbjct: 1235 IKFEDVH------LRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNAL--FRIV 1286
Query: 89 GV-TGQILTNGHSR---NINAFRRVSCYIQQ--------------------DDRLQPLLT 124
+ G+I+ + + RRV I Q D L L
Sbjct: 1287 ELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALE 1346
Query: 125 ---IENVM--SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
I++V+ + GLD + S GQ++ LS+A L+ +++ LDE T S
Sbjct: 1347 RAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATAS 1401
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 38.5 bits (91), Expect = 0.011
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLL-DVL 82
LKN+ P + + G SG+GKS+L+ + L
Sbjct: 625 LKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656
Score = 37.0 bits (87), Expect = 0.037
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSL 78
LKN+ P ++L+ G SG+GKSSL
Sbjct: 16 LKNIDLDIPRDKLVVFTGLSGSGKSSL 42
>gnl|CDD|233821 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons
confer the ability to use somewhat different profiles
of C-P bond-containing compounds (see PMID:15231805),
including phosphites as well as phosphonates. PhnN in
E. coli shows considerable homology to guanylate
kinases (EC 2.7.4.8), and has actually been shown to
act as a ribose 1,5-bisphosphokinase (PRPP forming).
This suggests an analogous kinase reaction for
phosphonate metabolism, converting
5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP [Central intermediary metabolism,
Phosphorus compounds].
Length = 179
Score = 36.6 bits (85), Expect = 0.015
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 64 LIAIMGPSGAGKSSLLD 80
LI ++GPSGAGK +LLD
Sbjct: 3 LIYVVGPSGAGKDTLLD 19
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 37.1 bits (86), Expect = 0.016
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 42/149 (28%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--------YRSNG-----------VT 91
VLKN+ + +++AI G +G+GK+SLL ++ G + +G +
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111
Query: 92 GQILTN---GHSRNINAFRRV--SCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQ-- 144
G I N G S + ++ V +C +++D + E NT +
Sbjct: 112 GTIKENIIFGVSYDEYRYKSVVKACQLEED--------------ITKFPEKDNTVLGEGG 157
Query: 145 --LSGGQKKRLSIALELINNPRVMFLDEP 171
LSGGQ+ R+S+A + + + LD P
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSP 186
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 33.7 bits (78), Expect = 0.030
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 30/86 (34%)
Query: 139 NTRSSQLSGGQKKRL-SIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINN----- 192
+ S LSGG+K+ L +AL ++A + +N
Sbjct: 17 SRDSGTLSGGEKQVLAYLAL------------------------AAALAAQYGSNRGGPA 52
Query: 193 PRVMFLDEPTTGLDSQSCSQCIKLLK 218
PR++FLDE LD ++ ++LL+
Sbjct: 53 PRLIFLDEAFAKLDEENIRSLLELLR 78
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 36.6 bits (85), Expect = 0.033
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 41/147 (27%)
Query: 67 IMGPSGAGKSSLLDVLSGY-RSNGVTG--------QILTNGHSRNINAFR--RVSCYIQQ 115
I+G SG+GKS L G +NG G +IL N + +N R ++S I Q
Sbjct: 47 IVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREIL-NLPEKELNKLRAEQIS-MIFQ 104
Query: 116 D--DRLQPLLTI-ENVMSLL----GLDESQNTRSS---------------------QLSG 147
D L P + + E +M +L G+ +++ S + SG
Sbjct: 105 DPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSG 164
Query: 148 GQKKRLSIALELINNPRVMFLDEPTTS 174
G ++R+ IA+ L+ P+++ DEPTT+
Sbjct: 165 GMRQRVMIAMALLCRPKLLIADEPTTA 191
Score = 35.1 bits (81), Expect = 0.096
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTI 231
++R+ IA+ L+ P+++ DEPTT LD +Q + LL + ++ T I I
Sbjct: 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMI 218
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 35.8 bits (83), Expect = 0.042
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 145 LSGGQKKRLSIALELINNPRVMFLDEPT 172
LSGGQK+R++IA L P + DEPT
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPT 172
Score = 34.3 bits (79), Expect = 0.16
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIH 232
QK+R++IA L P + DEPT LD + + +K ++++ G TII H
Sbjct: 149 QKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203
>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related
GTPases of G3E family [Amino acid transport and
metabolism].
Length = 323
Score = 36.1 bits (84), Expect = 0.044
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 20/95 (21%)
Query: 34 LTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS------GYR- 86
+T S + +++L+ L R + +I I G GAGKS+L++ L G+R
Sbjct: 23 ITLVESRRPDHRALARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRV 82
Query: 87 -------SNGVTG------QILTNGHSRNINAFRR 108
S+ TG +I + + F R
Sbjct: 83 AVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIR 117
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 35.6 bits (82), Expect = 0.045
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 61 SNQLIAIMGPSGAGKSSLLD----VLSG--YRSNGVTGQILTNGHSRNINAFRRVSCYIQ 114
S L I GP+G+GK+++LD L G R G+ + G + Y++
Sbjct: 18 SKGLTLIYGPNGSGKTTILDAIRWALYGKTSRLKKSKGRGIVKGDIEIEKDEGKKKTYVE 77
Query: 115 QDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
+T EN L L + +R G+K + SI + + F+DE
Sbjct: 78 --------ITFENNKGKLKLRLIEESRELTKKKGKKVKKSILEIVEIDELQEFIDE 125
>gnl|CDD|236648 PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.
Length = 186
Score = 35.1 bits (81), Expect = 0.049
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 63 QLIAIMGPSGAGKSSLLDVL 82
+LI +MGPSG+GK SLL L
Sbjct: 3 KLIWLMGPSGSGKDSLLAAL 22
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 35.0 bits (81), Expect = 0.052
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 24/106 (22%)
Query: 59 FPSNQLIAIMGPSGAGKSSLLD----VLSGYRSNGVTGQILTNGHS---RNINAFRRVSC 111
SN AI+GP+G+GKS+++D VL G + G +L IN S
Sbjct: 19 GGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGIN-----SA 73
Query: 112 YIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIAL 157
++ +T + L+ Q LSGG+K ++AL
Sbjct: 74 SVE--------ITFDKSYFLVL----QGKVEQILSGGEKSLSALAL 107
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 35.7 bits (82), Expect = 0.053
Identities = 57/245 (23%), Positives = 106/245 (43%), Gaps = 29/245 (11%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS----RNINAFR 107
L+N+ + I I+G +G+GKS+L L+G G++L +G + R
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ-KGKVLVSGIDTGDFSKLQGIR 76
Query: 108 RVSCYIQQDDRLQPL-LTIENVMSL----LGLDESQNTRSSQLSGGQKKRLSIALELINN 162
++ + Q+ Q + T+E ++ L L + +KR+ AL I
Sbjct: 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIE----------IRKRVDRALAEIGL 126
Query: 163 PRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQ 222
+ T S Q + +++A L P + DE T+ LD S ++ +K + +
Sbjct: 127 EKYRHRSPKTLSG--GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE 184
Query: 223 QGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADF 282
+G+TI+ H D++ ++ G+ + +G + N LS V+L P+
Sbjct: 185 KGKTIVYITHNLEE--LHDADRIIVMDRGKIVLEGEPE---NVLSDVSLQTLGLTPPS-- 237
Query: 283 VIELA 287
+IELA
Sbjct: 238 LIELA 242
>gnl|CDD|227341 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 375
Score = 35.5 bits (82), Expect = 0.069
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT 96
L+ I+G +G+GKS+ + + GYR+ TG I+T
Sbjct: 129 LVIIVGATGSGKSTTMAAMIGYRNKNSTGHIIT 161
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 33.4 bits (76), Expect = 0.086
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 64 LIAIMGPSGAGKSSLLDVLS 83
+I I GP G+GKS+L L+
Sbjct: 1 IILITGPPGSGKSTLAKKLA 20
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 34.4 bits (80), Expect = 0.096
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 63 QLIAIMGPSGAGKSSLLDVL 82
LI + GPSG GKS+L+ L
Sbjct: 5 LLIVLSGPSGVGKSTLVKAL 24
>gnl|CDD|213242 cd03275, ABC_SMC1_euk, ATP-binding cassette domain of eukaryotic
SMC1 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 247
Score = 34.5 bits (80), Expect = 0.099
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVLS---GYRSNGVTGQILT---NGHSRNINAFRR--VSC 111
P ++ I+GP+G+GKS+L+D +S G +S+ + + L V+
Sbjct: 20 PFDRFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTA 79
Query: 112 YIQQDD 117
+ DD
Sbjct: 80 VYEDDD 85
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 34.9 bits (81), Expect = 0.13
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 23/149 (15%)
Query: 41 GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG----------YRSNGV 90
L + + KNL + + +AI+G +G GK++LL L G + N
Sbjct: 324 NLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENAN 383
Query: 91 TG---QILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLG--LDESQNTRSS-- 143
G Q ++ F +S + Q+ D Q V LG L + + S
Sbjct: 384 IGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQ------AVRGTLGRLLFSQDDIKKSVK 437
Query: 144 QLSGGQKKRLSIALELINNPRVMFLDEPT 172
LSGG+K R+ ++ P V+ +DEPT
Sbjct: 438 VLSGGEKGRMLFGKLMMQKPNVLVMDEPT 466
Score = 31.8 bits (73), Expect = 1.0
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 131 LLGLD---ESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
LLG+ E S+++ G K R+ +A L +NP ++ LDEPT
Sbjct: 139 LLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPT 183
Score = 31.4 bits (72), Expect = 1.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 180 KKRLSIALELINNPRVMFLDEPTTGLD 206
K R+ +A L +NP ++ LDEPT LD
Sbjct: 161 KLRVLLAQALFSNPDILLLDEPTNNLD 187
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 34.6 bits (80), Expect = 0.14
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 32 KDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG 84
+D+ Y V + + L L + ++ ++G SG GKS+L++ L
Sbjct: 138 EDIGYPVLFVSAKNGDGLEELAELL----AGKITVLLGQSGVGKSTLINALLP 186
>gnl|CDD|206743 cd11383, YfjP, YfjP GTPase. The Era (E. coli Ras-like
protein)-like YfjP subfamily includes several
uncharacterized bacterial GTPases that are similar to
Era. They generally show sequence conservation in the
region between the Walker A and B motifs (G1 and G3 box
motifs), to the exclusion of other GTPases. Era is
characterized by a distinct derivative of the KH domain
(the pseudo-KH domain) which is located C-terminal to
the GTPase domain.
Length = 140
Score = 33.1 bits (76), Expect = 0.15
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 66 AIMGPSGAGKSSLLDVLSG 84
+MG +GAGKSSL + L G
Sbjct: 1 GLMGKTGAGKSSLCNALFG 19
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity. The
Ras superfamily is divided into at least four families
in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families.
This superfamily also includes proteins like the GTP
translation factors, Era-like GTPases, and G-alpha chain
of the heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family
regulates initiation, elongation, termination, and
release in translation, and the Era-like GTPase family
regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 32.8 bits (75), Expect = 0.24
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 66 AIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR 107
++G G GKSSLL+ L G V+ G +R+ + +
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSD---VPGTTRDPDVYV 39
>gnl|CDD|112137 pfam03308, ArgK, ArgK protein. The ArgK protein acts as an ATPase
enzyme and as a kinase, and phosphorylates periplasmic
binding proteins involved in the LAO (lysine, arginine,
ornithine)/AO transport systems.
Length = 267
Score = 33.5 bits (77), Expect = 0.24
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 23/74 (31%)
Query: 55 LCGRFPSNQLIAIMGPSGAGKSSLLDVL------SGYR--------SNGVTG------QI 94
L GR + I G GAGKS+L++ L G+R S+ TG +
Sbjct: 25 LTGR---AHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRT 81
Query: 95 LTNGHSRNINAFRR 108
+ + AF R
Sbjct: 82 RMQRLAVDPGAFIR 95
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 32.6 bits (74), Expect = 0.27
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVL--SGYRSNGVTGQILTNGHSRNINAFR 107
+ + GPSG GK+SLL L + G Q N A R
Sbjct: 22 GGPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFSQALR 71
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 33.5 bits (77), Expect = 0.28
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK 218
Q +R+ IA LI P+++ DEP + LD +Q + LL+
Sbjct: 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQ 205
Score = 32.4 bits (74), Expect = 0.69
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 32/137 (23%)
Query: 67 IMGPSGAGKSSLLDVLSGY---RSNGVT--GQILTNGHSRNINAFRRVSCYIQQDD--RL 119
++G SG GKS+ + G V G+ L A R I QD L
Sbjct: 52 VVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASL 111
Query: 120 QPLLTI------------------------ENVMSLLGLDESQ-NTRSSQLSGGQKKRLS 154
P +TI + +M +GL + N + SGGQ +R+
Sbjct: 112 NPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIG 171
Query: 155 IALELINNPRVMFLDEP 171
IA LI P+++ DEP
Sbjct: 172 IARALILEPKLIICDEP 188
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 32.1 bits (74), Expect = 0.31
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 64 LIAIMGPSGAGKSSLL 79
LI + GPSG GKS+LL
Sbjct: 1 LIVLSGPSGVGKSTLL 16
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 30.2 bits (69), Expect = 0.35
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 66 AIMGPSGAGKSSLLDVLS 83
+ GPSG+GKS+L+D +
Sbjct: 25 LLTGPSGSGKSTLIDAIQ 42
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 33.0 bits (75), Expect = 0.35
Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 37/176 (21%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
EIK DL L K VLK++ Q + I G +G+GKSSL L+ +R
Sbjct: 19 EIKIHDLCVRYENNL------KPVLKHVKAYIKPGQKVGICGRTGSGKSSL--SLAFFRM 70
Query: 88 NGV-TGQILTNG---HSRNINAFR-RVSCYIQQ-------------------DDRLQPLL 123
+ G+I+ +G ++ R R+S +Q DDRL L
Sbjct: 71 VDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEAL 130
Query: 124 TI---ENVMSLL--GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
I +N++ L GLD S GQ++ +A + ++ +DE T S
Sbjct: 131 EIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATAS 186
>gnl|CDD|206728 cd04165, GTPBP1_like, GTP binding protein 1 (GTPBP1)-like family
includes GTPBP2. Mammalian GTP binding protein 1
(GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1
are GTPases whose specific functions remain unknown. In
mouse, GTPBP1 is expressed in macrophages, in smooth
muscle cells of various tissues and in some neurons of
the cerebral cortex; GTPBP2 tissue distribution appears
to overlap that of GTPBP1. In human leukemia and
macrophage cell lines, expression of both GTPBP1 and
GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The
chromosomal location of both genes has been identified
in humans, with GTPBP1 located in chromosome 22q12-13.1
and GTPBP2 located in chromosome 6p21-12. Human
glioblastoma multiforme (GBM), a highly-malignant
astrocytic glioma and the most common cancer in the
central nervous system, has been linked to chromosomal
deletions and a translocation on chromosome 6. The GBM
translocation results in a fusion of GTPBP2 and PTPRZ1,
a protein involved in oligodendrocyte differentiation,
recovery, and survival. This fusion product may
contribute to the onset of GBM.
Length = 224
Score = 32.6 bits (75), Expect = 0.36
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 9/44 (20%)
Query: 65 IAIMGPSGAGKSSLLDVLS-GYRSNGVTGQILTNGHSRNINAFR 107
+A++G AGKS+LL VL+ G NG G +R +N FR
Sbjct: 2 VAVVGNVDAGKSTLLGVLTQGELDNG-------RGKAR-LNLFR 37
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 32.5 bits (74), Expect = 0.36
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 17/188 (9%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108
+ L +L F + + I G +G GKSSLL +++G +G I + NIN +
Sbjct: 13 QKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS-SGNIYY--KNCNINNIAK 69
Query: 109 VSC-YIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMF 167
C YI + L+ +T+ +L E N+ + + +L
Sbjct: 70 PYCTYIGHNLGLKLEMTVFE--NLKFWSEIYNSAETLYAAIHYFKLH-----------DL 116
Query: 168 LDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTI 227
LDE S + +K ++IA + + LDE T L ++ L+ M + G +
Sbjct: 117 LDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIV 176
Query: 228 ICTIHQPS 235
+ + H S
Sbjct: 177 LLSSHLES 184
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 30.0 bits (68), Expect = 0.47
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 64 LIAIMGPSGAGKSSLLDVLS---GYRSNGVTGQIL 95
+IAI G SG+GKS++ L+ G RS V +I+
Sbjct: 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDEIV 35
>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase. TrmE (MnmE,
ThdF, MSS1) is a 3-domain protein found in bacteria and
eukaryotes. It controls modification of the uridine at
the wobble position (U34) of tRNAs that read codons
ending with A or G in the mixed codon family boxes.
TrmE contains a GTPase domain that forms a canonical
Ras-like fold. It functions a molecular switch GTPase,
and apparently uses a conformational change associated
with GTP hydrolysis to promote the tRNA modification
reaction, in which the conserved cysteine in the
C-terminal domain is thought to function as a catalytic
residue. In bacteria that are able to survive in
extremely low pH conditions, TrmE regulates
glutamate-dependent acid resistance.
Length = 159
Score = 31.7 bits (73), Expect = 0.52
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 65 IAIMGPSGAGKSSLLDVLSG 84
+ I G GKSSLL+ L+G
Sbjct: 6 VVIAGKPNVGKSSLLNALAG 25
>gnl|CDD|206690 cd04104, p47_IIGP_like, p47 GTPase family includes IGTP,
TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. The p47
GTPase family consists of several highly homologous
proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI,
LRG-47, and IIGP1. They are found in higher eukaryotes
where they play a role in immune resistance against
intracellular pathogens. p47 proteins exist at low
resting levels in mouse cells, but are strongly induced
by Type II interferon (IFN-gamma). ITGP is critical for
resistance to Toxoplasma gondii infection and in
involved in inhibition of Coxsackievirus-B3-induced
apoptosis. TGTP was shown to limit vesicular stomatitis
virus (VSV) infection of fibroblasts in vitro. IRG-47
is involved in resistance to T. gondii infection.
LRG-47 has been implicated in resistance to T. gondii,
Listeria monocytogenes, Leishmania, and mycobacterial
infections. IIGP1 has been shown to localize to the ER
and to the Golgi membranes in IFN-induced cells and
inflamed tissues. In macrophages, IIGP1 interacts with
hook3, a microtubule binding protein that participates
in the organization of the cis-Golgi compartment.
Length = 197
Score = 31.9 bits (73), Expect = 0.61
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 65 IAIMGPSGAGKSSLLDVLSG 84
IA+ G SGAGKSS ++ L G
Sbjct: 4 IAVTGESGAGKSSFINALRG 23
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 31.4 bits (72), Expect = 0.72
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 65 IAIMGPSGAGKSSLLDVLS--GYR 86
I I G GK++LL+ L+ GY
Sbjct: 2 IVITGGPSTGKTTLLEALAARGYP 25
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 32.7 bits (75), Expect = 0.73
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 196 MFLDEPTTGLDSQSCSQCIKLLKMISQQG-RTIICTIH 232
+ LDEPT LDS SQ + L++ + + G I+ H
Sbjct: 815 LILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSH 852
>gnl|CDD|234579 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 31.6 bits (73), Expect = 0.75
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 65 IAIMGPSGAGKSSL 78
IAI GP+G+GK ++
Sbjct: 7 IAIDGPAGSGKGTV 20
>gnl|CDD|223360 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 222
Score = 31.8 bits (73), Expect = 0.76
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 65 IAIMGPSGAGKSSL 78
IAI GP+G+GKS++
Sbjct: 7 IAIDGPAGSGKSTV 20
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The
full-length GTPase protein is required for the complete
activity of the protein of interacting with the 50S
ribosome and binding of both adenine and guanine
nucleotides, with a preference for guanine nucleotide.
Length = 117
Score = 30.7 bits (70), Expect = 0.77
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYR 86
+A++G GKS+L++ L+G +
Sbjct: 2 VALVGRPNVGKSTLINALTGAK 23
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 30.9 bits (71), Expect = 0.81
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 65 IAIMGPSGAGKSSL 78
IAI GP+G+GKS++
Sbjct: 2 IAIDGPAGSGKSTV 15
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA
and the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial
binding of EF-G as well. The dissociation of EF-G
leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains
only bacterial members.
Length = 268
Score = 31.8 bits (73), Expect = 0.85
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 65 IAIMGPSGAGKSSLLDVL 82
IA++G SG+GK++L + L
Sbjct: 2 IALVGHSGSGKTTLAEAL 19
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 30.5 bits (69), Expect = 0.99
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 65 IAIMGPSGAGKSSLLDVLS---GYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQP 121
I I G G+GK++L L+ G + NG ++ +D+L
Sbjct: 1 ILITGTPGSGKTTLAKELAERLGDVLRDL---AKENGLVLELDEEITDESKRLDEDKLAK 57
Query: 122 LLTI 125
LL
Sbjct: 58 LLDK 61
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP
kinase. This enzyme transfers a phosphate from ATP to
GMP, yielding ADP and GDP [Purines, pyrimidines,
nucleosides, and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 30.9 bits (71), Expect = 1.00
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 64 LIAIMGPSGAGKSSLL 79
LI I GPSGAGKS+L+
Sbjct: 2 LIVISGPSGAGKSTLV 17
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a
wide variety of presumed DNA repair proteins.
Length = 154
Score = 30.7 bits (70), Expect = 1.0
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
+ ++K L P L + G G GKS+L
Sbjct: 21 PLRWLVKGL---LPRGGLTLLAGAPGTGKSTLA 50
>gnl|CDD|238551 cd01131, PilT, Pilus retraction ATPase PilT. PilT is a nucleotide
binding protein responsible for the retraction of type
IV pili, likely by pili disassembly. This retraction
provides the force required for travel of bacteria in
low water environments by a mechanism known as
twitching motility.
Length = 198
Score = 31.1 bits (71), Expect = 1.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT 96
L+ + GP+G+GKS+ L + Y + T ILT
Sbjct: 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILT 35
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 31.7 bits (73), Expect = 1.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 67 IMGPSGAGKSSLLDVLSG 84
+ G SG GKS+LL+ L+
Sbjct: 169 LAGQSGVGKSTLLNALAP 186
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 32.0 bits (72), Expect = 1.1
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVLSGYRS----NGVTGQI-LTNGHSRNINAF 106
P ++A++GP G GKS+L+ L + + + G I + +G +R I
Sbjct: 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFL 118
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 32.0 bits (73), Expect = 1.1
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 14/72 (19%)
Query: 61 SNQLIAIMGPSGAGKSSLLD----VLSGYRSNGVTGQILT-------NGHSRNINAFRRV 109
S I GP+G+GKS++ D L S + + L+ NG S N V
Sbjct: 22 SKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGN---EAYV 78
Query: 110 SCYIQQDDRLQP 121
+ + DD P
Sbjct: 79 TVTFKNDDGKFP 90
>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only].
Length = 454
Score = 31.8 bits (73), Expect = 1.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 65 IAIMGPSGAGKSSLLDVLSGY 85
+ I+G GKSSLL+ L G
Sbjct: 220 VVIIGRPNVGKSSLLNALLGR 240
>gnl|CDD|129833 TIGR00750, lao, LAO/AO transport system ATPase. In E. coli,
mutation of this kinase blocks phosphorylation of two
transporter system periplasmic binding proteins and
consequently inhibits those transporters. This kinase is
also found in Gram-positive bacteria, archaea, and the
roundworm C. elegans. It may have a more general, but
still unknown function. Mutations have also been found
that do not phosphorylate the periplasmic binding
proteins, yet still allow transport. The ATPase activity
of this protein seems to be necessary, however
[Transport and binding proteins, Amino acids, peptides
and amines, Regulatory functions, Protein interactions].
Length = 300
Score = 31.3 bits (71), Expect = 1.3
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 20/82 (24%)
Query: 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS------GYR--------SNGVTG 92
E K++L + + + I G GAGKS+LL+ L G R S+ TG
Sbjct: 19 EAKELLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLRVAVIAVDPSSPFTG 78
Query: 93 ------QILTNGHSRNINAFRR 108
+ + + AF R
Sbjct: 79 GSILGDRTRMQRLATDPGAFIR 100
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 30.3 bits (69), Expect = 1.4
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 64 LIAIMGPSGAGKSS 77
+I +MG SG+GKS+
Sbjct: 1 IIVVMGVSGSGKST 14
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 31.6 bits (72), Expect = 1.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
R +SGGQK+R+S+A + +N V D+P
Sbjct: 737 RGVNISGGQKQRVSMARAVYSNSDVYIFDDP 767
Score = 31.6 bits (72), Expect = 1.5
Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 49/181 (27%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
IKF+D+ L ++ E VL L ++ + I+G +GAGKSS+L+ L +R
Sbjct: 1238 IKFEDVV------LRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNAL--FRIV 1289
Query: 89 GV-TGQILTNGHSRNINAF-----RRVSCYIQQDDRLQPLL---TI---------ENVMS 130
+ G+IL +G +I+ F R+V I Q P+L T+ N
Sbjct: 1290 ELERGRILIDGC--DISKFGLMDLRKVLGIIPQ----APVLFSGTVRFNLDPFNEHNDAD 1343
Query: 131 L-----------------LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
L LGLD + S GQ++ LS+A L+ +++ LDE T
Sbjct: 1344 LWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATA 1403
Query: 174 S 174
+
Sbjct: 1404 A 1404
Score = 30.1 bits (68), Expect = 4.6
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ----CIK 215
QK+R+S+A + +N V D+P + LD+ Q CIK
Sbjct: 745 QKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIK 785
>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 278
Score = 31.2 bits (71), Expect = 1.4
Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 472 LLVVFIAQSVGYMVGAVF-NVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRW 524
LL ++G ++G++F N V +L++ + F G + ++P +++W
Sbjct: 180 LLYGLAYIALGALLGSLFKNSEAAILVISILILLLSGFFGGLFPLPNMPSFLQW 233
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 30.7 bits (70), Expect = 1.5
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 65 IAIMGPSGAGKSSL 78
I I+GP GAGKS+L
Sbjct: 3 ILILGPPGAGKSTL 16
>gnl|CDD|220688 pfam10317, 7TM_GPCR_Srd, Serpentine type 7TM GPCR chemoreceptor
Srd. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srd is part of the
larger Str superfamily of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 293
Score = 31.0 bits (71), Expect = 1.6
Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 7/121 (5%)
Query: 388 LFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLF 447
+S+L+H ++ S +LTF IL R L + + ++ ++F
Sbjct: 85 GYSLLLHFLLHSGWSLLLTFYYRYYILKHVDPKRK-KLILIFFLHYI--PSLSQLLIVIF 141
Query: 448 TTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMMM 507
L + +N T V + A+ N + PV +P+++
Sbjct: 142 LVPTDFLPVEAETKELHPNYNLTDYTVTGFSDLQS--FPALINTLI--MTIPVFPIPIII 197
Query: 508 F 508
Sbjct: 198 L 198
>gnl|CDD|237393 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase;
Provisional.
Length = 512
Score = 31.0 bits (71), Expect = 1.8
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Query: 55 LCGRFPSNQLIAIMGPSGAGKSS 77
L R P +IAI GP+GAGKS+
Sbjct: 280 LMKRQP---IIAIDGPAGAGKST 299
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 30.4 bits (70), Expect = 1.8
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 64 LIAIMGPSGAGKSSL 78
LI + GPSGAGKS+L
Sbjct: 7 LIVLSGPSGAGKSTL 21
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 30.1 bits (68), Expect = 1.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 65 IAIMGPSGAGKSSLLDVLSGY 85
IAI+G SG+GKS+L LS +
Sbjct: 3 IAIIGYSGSGKSTLARKLSQH 23
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 30.9 bits (70), Expect = 2.1
Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 26/120 (21%)
Query: 62 NQLIAIMGPSGAGKSSLL-----------------DVLSGYRS--NGVTGQI--LTNGHS 100
N + I+GPSG+GKS+LL D Y + G++ L G
Sbjct: 1 NPNMLIVGPSGSGKSTLLKLLALRLLARGGRVIVIDPKGEYSGLARALGGEVIDLGPGSG 60
Query: 101 RNINAFR--RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALE 158
++N ++ + ++ +++LL L L+ ++ L AL
Sbjct: 61 ISLNPLDIFPTGEDAEELEADAHARKLDLLLALLELAALLG---RDLTPREETALDRALR 117
>gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of
cytidylate kinase, which catalyzes the phosphorylation
of cytidine 5-monophosphate (dCMP) to cytidine 5
-diphosphate (dCDP) in the presence of ATP or GTP. UMP
and dCMP can also act as acceptors [Purines,
pyrimidines, nucleosides, and nucleotides, Nucleotide
and nucleoside interconversions].
Length = 217
Score = 30.5 bits (69), Expect = 2.1
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 65 IAIMGPSGAGKSSL 78
IAI GPSGAGKS++
Sbjct: 5 IAIDGPSGAGKSTV 18
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain
is found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family
also includes the RecF and RecN proteins that are
involved in DNA metabolism and recombination.
Length = 1162
Score = 31.1 bits (70), Expect = 2.3
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 66 AIMGPSGAGKSSLLDVLS---GYRSN 88
AI+GP+G+GKS++LD + G RS
Sbjct: 27 AIVGPNGSGKSNILDAILFVLGERSA 52
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase.
The Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show
sequence conservation in the region between the Walker
A and B motifs (G1 and G3 box motifs), to the exclusion
of other GTPases. TrmE is ubiquitous in bacteria and is
a widespread mitochondrial protein in eukaryotes, but
is absent from archaea. The yeast member of TrmE
family, MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein
involved in cell division control. Era is characterized
by a distinct derivative of the KH domain (the
pseudo-KH domain) which is located C-terminal to the
GTPase domain. EngA and its orthologs are composed of
two GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct
GTPases, gave rise to this family.
Length = 161
Score = 29.9 bits (68), Expect = 2.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 66 AIMGPSGAGKSSLLDVLSG 84
AI G GKSSLL+ L G
Sbjct: 1 AIFGRPNVGKSSLLNALLG 19
>gnl|CDD|75717 PRK06731, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 270
Score = 30.5 bits (68), Expect = 2.3
Identities = 22/99 (22%), Positives = 50/99 (50%), Gaps = 15/99 (15%)
Query: 24 ADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSN-------QLIAIMGPSGAGKS 76
A+++++KF++ T + + +L+++ F + Q IA++GP+G GK+
Sbjct: 36 AEKLKVKFENATMITEEVIEY------ILEDMSSHFNTENVFEKEVQTIALIGPTGVGKT 89
Query: 77 SLLDVLS-GYRSNGVTGQILTNGHSRNINAFRRVSCYIQ 114
+ L ++ + T +T HSR I +++ Y++
Sbjct: 90 TTLAKMAWQFHGKKKTVGFITTDHSR-IGTVQQLQDYVK 127
>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed.
Length = 449
Score = 30.8 bits (71), Expect = 2.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 65 IAIMGPSGAGKSSLLDVLSGY 85
+ I G GKSSLL+ L G
Sbjct: 218 VVIAGRPNVGKSSLLNALLGE 238
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 30.3 bits (69), Expect = 2.6
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 57 GRFPSNQLIAIMGPSGAGKSSLLDVL 82
R ++ I GP GAGKS+L + L
Sbjct: 32 RRT----IVGIAGPPGAGKSTLAEFL 53
>gnl|CDD|238899 cd01918, HprK_C, HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the
phosphorylation state of the phosphocarrier protein HPr
and regulates the utilization of carbon sources by
gram-positive bacteria. It catalyzes both the
ATP-dependent phosphorylation of Ser-46 of HPr and its
dephosphorylation by phosphorolysis. The latter
reaction uses inorganic phosphate as substrate and
produces pyrophosphate. Phosphoenolpyruvate
carboxykinase (PEPCK) and the C-terminal catalytic
domain of HprK/P are structurally similar with
conserved active site residues suggesting these two
phosphotransferases have related functions. The HprK/P
N-terminal domain is structurally similar to the
N-terminal domains of the MurE and MurF amino acid
ligases.
Length = 149
Score = 29.5 bits (67), Expect = 2.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 65 IAIMGPSGAGKSSL 78
+ I GPSG GKS L
Sbjct: 17 VLITGPSGIGKSEL 30
>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain. Proteins
with a small GTP-binding domain recognized by this
model include Ras, RhoA, Rab11, translation elongation
factor G, translation initiation factor IF-2,
tetratcycline resistance protein TetM, CDC42, Era,
ADP-ribosylation factors, tdhF, and many others. In
some proteins the domain occurs more than once.This
model recognizes a large number of small GTP-binding
proteins and related domains in larger proteins. Note
that the alpha chains of heterotrimeric G proteins are
larger proteins in which the NKXD motif is separated
from the GxxxxGK[ST] motif (P-loop) by a long insert
and are not easily detected by this model [Unknown
function, General].
Length = 162
Score = 29.6 bits (67), Expect = 2.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 65 IAIMGPSGAGKSSLLDVLSGY 85
I I+G GKS+LL+ L G
Sbjct: 4 IVIVGDPNVGKSTLLNRLLGN 24
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de
novo or salvage biosynthesis of thymidine triphosphate
(TTP).
Length = 200
Score = 29.9 bits (68), Expect = 2.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 64 LIAIMGPSGAGKSSLLDVLSGY 85
I G GAGK++L+++L+
Sbjct: 2 FIVFEGIDGAGKTTLIELLAER 23
>gnl|CDD|235450 PRK05416, PRK05416, glmZ(sRNA)-inactivating NTPase; Provisional.
Length = 288
Score = 30.1 bits (69), Expect = 3.0
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 63 QLIAIMGPSGAGKSSLLDVL--SGY 85
+L+ + G SGAGKS L L GY
Sbjct: 7 RLVIVTGLSGAGKSVALRALEDLGY 31
>gnl|CDD|130314 TIGR01247, drrB, daunorubicin resistance ABC transporter membrane
protein. This model describes daunorubicin resistance
ABC transporter, membrane associated protein in bacteria
and archaea. The protein associated with effux of the
drug, daunorubicin. This transport system belong to the
larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. In eukaryotes proteins of similar function
include p-gyco proteins, multidrug resistance protein
etc [Transport and binding proteins, Other].
Length = 236
Score = 30.1 bits (68), Expect = 3.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 501 LVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYGLEG 537
L++PM SG I +P +M+ ++++ L Y ++G
Sbjct: 164 LMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDG 200
>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family. The YihA (EngB)
subfamily of GTPases is typified by the E. coli YihA, an
essential protein involved in cell division control.
YihA and its orthologs are small proteins that typically
contain less than 200 amino acid residues and consists
of the GTPase domain only (some of the eukaryotic
homologs contain an N-terminal extension of about 120
residues that might be involved in organellar
targeting). Homologs of yihA are found in most
Gram-positive and Gram-negative pathogenic bacteria,
with the exception of Mycobacterium tuberculosis. The
broad-spectrum nature of YihA and its essentiality for
cell viability in bacteria make it an attractive
antibacterial target.
Length = 170
Score = 29.4 bits (67), Expect = 3.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFR 107
+A G S GKSSL++ L+ + T + T G ++ IN F
Sbjct: 2 VAFAGRSNVGKSSLINALTNRKKLARTSK--TPGRTQLINFFN 42
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 30.4 bits (69), Expect = 3.1
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 67 IMGPSGAGKSSLLDVL 82
I+G +G+GKSS+L+ +
Sbjct: 28 IIGQNGSGKSSILEAI 43
>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate
transferase; Reviewed.
Length = 307
Score = 30.1 bits (69), Expect = 3.1
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 64 LIAIMGPSGAGKSSL 78
+I I+GP+ +GK++L
Sbjct: 6 VIVIVGPTASGKTAL 20
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels of
palindromic sequences in DNA. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1042
Score = 30.7 bits (69), Expect = 3.2
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 21/99 (21%)
Query: 137 SQNTR-SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRV 195
+ + R S+ LSGG+ S++L L + L+
Sbjct: 942 TGSVRPSATLSGGETFLASLSLALALADLL--------------STSGGTVLDS------ 981
Query: 196 MFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP 234
+F+DE LD S + I +L I + + I H P
Sbjct: 982 LFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP 1020
Score = 29.9 bits (67), Expect = 4.9
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLD 80
K + I G +GAGK++LLD
Sbjct: 15 KGTHTIDFTALG--PIFLICGKTGAGKTTLLD 44
>gnl|CDD|223455 COG0378, HypB, Ni2+-binding GTPase involved in regulation of
expression and maturation of urease and hydrogenase
[Posttranslational modification, protein turnover,
chaperones / Transcription].
Length = 202
Score = 29.9 bits (68), Expect = 3.2
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 64 LIAIMGPSGAGKSSLLDVL-----SGYRSNGVTGQILTN 97
I + GP G+GK++L++ Y+ +TG I T
Sbjct: 15 RIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTK 53
>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase.
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first
identified as part of the Human Cancer Genome Project.
It maps to chromosome 4q12 and is sometimes referred to
as Arfrp2 (Arf-related protein 2). This is a novel
subfamily identified in human cancers that is
uncharacterized to date.
Length = 164
Score = 29.3 bits (66), Expect = 3.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSN 88
I ++G GAGK+SLL LS RS
Sbjct: 2 ILVLGLDGAGKTSLLHSLSSERSL 25
>gnl|CDD|237040 PRK12289, PRK12289, GTPase RsgA; Reviewed.
Length = 352
Score = 30.0 bits (68), Expect = 3.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVL 82
N++ + GPSG GKSSL++ L
Sbjct: 171 RNKITVVAGPSGVGKSSLINRL 192
>gnl|CDD|222258 pfam13604, AAA_30, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. There is a Walker A and
Walker B.
Length = 195
Score = 29.5 bits (67), Expect = 3.6
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLS-GYRSNGVT 91
+++ + GP+G GK++ L + + G
Sbjct: 17 GDRVAVVQGPAGTGKTTSLKAAREAWEAAGYR 48
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 30.1 bits (68), Expect = 3.8
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 58 RFPSNQLIAIMGPSGAGKSSLLDVL-------SGYRSNGVTGQI--------LTNGHSRN 102
PS + I GP+G GKSSL +L G + G++ +T G R+
Sbjct: 474 EVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRD 533
Query: 103 -INAFRRVSCYIQQDDRLQPLLTIENVMSL-------LGLDESQNTRSSQLSGGQKKRLS 154
I ++ + L I + + L G Q+ LSGG+K+R++
Sbjct: 534 QIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDW-MDVLSGGEKQRIA 592
Query: 155 IALELINNPRVMFLDEPTTS 174
+A + P+ LDE T++
Sbjct: 593 MARLFYHKPQFAILDECTSA 612
>gnl|CDD|233406 TIGR01420, pilT_fam, pilus retraction protein PilT. This model
represents the PilT subfamily of proteins related to
GspE, a protein involved in type II secretion (also
called the General Secretion Pathway). PilT is an
apparent cytosolic ATPase associated with type IV pilus
systems. It is not required for pilin biogenesis, but is
required for twitching motility and social gliding
behaviors, shown in some species, powered by pilus
retraction. Members of this family may be found in some
species that type IV pili but have related structures
for DNA uptake and natural transformation [Cell
envelope, Surface structures, Cellular processes,
Chemotaxis and motility].
Length = 343
Score = 30.0 bits (68), Expect = 4.2
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT 96
VL+ L R LI + GP+G+GKS+ L + Y + I+T
Sbjct: 112 PVLRELAER--PRGLILVTGPTGSGKSTTLASMIDYINKNKAYHIIT 156
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 28.7 bits (65), Expect = 4.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 65 IAIMGPSGAGKSSLLDVLSG 84
I ++G SG GK++L L+G
Sbjct: 4 IMLIGRSGCGKTTLTQALNG 23
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 29.4 bits (66), Expect = 4.4
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN 102
VL+N+ Q + ++G +G+GKS+LL R G I +G S N
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAF--LRLLNTEGDIQIDGVSWN 68
>gnl|CDD|206738 cd08771, DLP_1, Dynamin_like protein family includes dynamins and
Mx proteins. The dynamin family of large
mechanochemical GTPases includes the classical dynamins
and dynamin-like proteins (DLPs) that are found
throughout the Eukarya. These proteins catalyze
membrane fission during clathrin-mediated endocytosis.
Dynamin consists of five domains; an N-terminal G
domain that binds and hydrolyzes GTP, a middle domain
(MD) involved in self-assembly and oligomerization, a
pleckstrin homology (PH) domain responsible for
interactions with the plasma membrane, GED, which is
also involved in self-assembly, and a proline arginine
rich domain (PRD) that interacts with SH3 domains on
accessory proteins. To date, three vertebrate dynamin
genes have been identified; dynamin 1, which is brain
specific, mediates uptake of synaptic vesicles in
presynaptic terminals; dynamin-2 is expressed
ubiquitously and similarly participates in membrane
fission; mutations in the MD, PH and GED domains of
dynamin 2 have been linked to human diseases such as
Charcot-Marie-Tooth peripheral neuropathy and rare
forms of centronuclear myopathy. Dynamin 3 participates
in megakaryocyte progenitor amplification, and is also
involved in cytoplasmic enlargement and the formation
of the demarcation membrane system. This family also
includes interferon-induced Mx proteins that inhibit a
wide range of viruses by blocking an early stage of the
replication cycle. Dynamin oligomerizes into helical
structures around the neck of budding vesicles in a GTP
hydrolysis-dependent manner.
Length = 278
Score = 29.5 bits (67), Expect = 4.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT 96
I ++G +GKSS+L+ L G I T
Sbjct: 6 IVVVGDQSSGKSSVLEALVGRDFLPRGSGICT 37
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing
and segregating chromosomes for partition. SMC proteins
are found in bacteria, archaea, and eukaryotes. This
family represents the SMC protein of most bacteria. The
smc gene is often associated with scpB (TIGR00281) and
scpA genes, where scp stands for segregation and
condensation protein. SMC was shown (in Caulobacter
crescentus) to be induced early in S phase but present
and bound to DNA throughout the cell cycle [Cellular
processes, Cell division, DNA metabolism,
Chromosome-associated proteins].
Length = 1179
Score = 29.6 bits (67), Expect = 5.6
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 58 RFPSNQLIAIMGPSGAGKSSLLD 80
F + I+GP+G GKS+++D
Sbjct: 20 NFDKG-ITGIVGPNGCGKSNIVD 41
>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain.
This domain contains a P-loop motif, also found in
several other families such as pfam00071, pfam00025 and
pfam00063. Elongation factor Tu consists of three
structural domains, this plus two C-terminal beta
barrel domains.
Length = 184
Score = 29.0 bits (66), Expect = 5.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 65 IAIMGPSGAGKSSLLDVLSGY 85
I I+G GK++L D L
Sbjct: 6 IGIIGHVDHGKTTLTDALLYV 26
>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 28.8 bits (65), Expect = 5.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 64 LIAIMGPSGAGKSSLLDVLSGY 85
I I G GAGK++ ++L
Sbjct: 5 FIVIEGIDGAGKTTQAELLKER 26
>gnl|CDD|227806 COG5519, COG5519, Superfamily II helicase and inactivated
derivatives [DNA replication, recombination, and
repair].
Length = 562
Score = 29.3 bits (66), Expect = 6.1
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELI-NNPRVMFLDE 200
Q S G+ +++A L NP + L +T N I E +N + LDE
Sbjct: 194 YGQSSTGKTTTMNLASSLWGNPDELRLTWYSTKNG--------IESEAEFHNDGPLPLDE 245
>gnl|CDD|238549 cd01129, PulE-GspE, PulE/GspE The type II secretory pathway is
the main terminal branch of the general secretory
pathway (GSP). It is responsible for the export the
majority of Gram-negative bacterial exoenzymes and
toxins. PulE is a cytoplasmic protein of the GSP, which
contains an ATP binding site and a tetracysteine motif.
This subgroup also includes PillB and HofB.
Length = 264
Score = 29.2 bits (66), Expect = 6.1
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 41 GLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
LG K E ++ + L + + +I + GP+G+GK++ L
Sbjct: 61 KLGLKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTL 97
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins
[General function prediction only].
Length = 219
Score = 28.8 bits (64), Expect = 6.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 65 IAIMGPSGAGKSSLL 79
I ++G G GK++LL
Sbjct: 8 IVVLGDGGVGKTTLL 22
>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN. RecN
ATPase involved in DNA repair; similar to ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of
different compounds including sugars, ions, peptides,
and more complex organic molecules. The nucleotide
binding domain shows the highest similarity between all
members of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 276
Score = 29.1 bits (66), Expect = 6.8
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 64 LIAIMGPSGAGKSSLLDVLS---GYRSN 88
L + G +GAGKS LLD LS G R++
Sbjct: 23 LTVLTGETGAGKSILLDALSLLLGGRAS 50
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 29.2 bits (66), Expect = 7.1
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 67 IMGPSGAGKSSLLD 80
++GP G+GK++LL
Sbjct: 116 VIGPPGSGKTTLLQ 129
>gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein
YsxC/EngB. Members of this protein family are a GTPase
associated with ribosome biogenesis, typified by YsxC
from Bacillus subutilis. The family is widely but not
universally distributed among bacteria. Members
commonly are called EngB based on homology to EngA, one
of several other GTPases of ribosome biogenesis.
Cutoffs as set find essentially all bacterial members,
but also identify large numbers of eukaryotic (probably
organellar) sequences. This protein is found in about
80 percent of bacterial genomes [Protein synthesis,
Other].
Length = 178
Score = 28.6 bits (65), Expect = 7.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 65 IAIMGPSGAGKSSLLDVLSG 84
IA G S GKSSL++ L+
Sbjct: 21 IAFAGRSNVGKSSLINALTN 40
>gnl|CDD|234814 PRK00698, tmk, thymidylate kinase; Validated.
Length = 205
Score = 28.6 bits (65), Expect = 7.4
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT 96
I I G GAGKS+ +++L + T
Sbjct: 5 FITIEGIDGAGKSTQIELLKELLEQQGRDVVFT 37
>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional.
Length = 215
Score = 28.5 bits (64), Expect = 7.5
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 174 SNPNDQKKRLSIALELINNPRVMFLDEPT-----TGLDSQSCSQCIKLLKMISQQ 223
SN N +K L +A L N+P ++F+ P +D + +Q K L+ +
Sbjct: 152 SNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAANV 206
>gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A.
Members of this protein were designated YjeQ and are now
designated RsgA (ribosome small subunit-dependent GTPase
A). The strongest motif in the alignment of these
proteins is GXSGVGKS[ST], a classic P-loop for
nucleotide binding. This protein has been shown to
cleave GTP and remain bound to GDP. A role as a
regulator of translation has been suggested. The Aquifex
aeolicus ortholog is split into consecutive open reading
frames. Consequently, this model was build in fragment
mode (-f option) [Protein synthesis, Translation
factors].
Length = 245
Score = 28.9 bits (65), Expect = 7.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSG 84
N++ G SG GKSSL++ L
Sbjct: 119 QNRISVFAGQSGVGKSSLINALDP 142
>gnl|CDD|224194 COG1275, TehA, Tellurite resistance protein and related permeases
[Inorganic ion transport and metabolism].
Length = 329
Score = 28.8 bits (65), Expect = 7.8
Identities = 33/162 (20%), Positives = 53/162 (32%), Gaps = 22/162 (13%)
Query: 352 LTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEM 411
L L ++ F AL + L + ++ N + + L H V++S + TFP+
Sbjct: 37 LRTLSYVLFYF-ALAIFFLLL--IVWILKLIKYPNTVIADLNHPVVSSFVP---TFPIAT 90
Query: 412 SILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTS 471
+L L AY L VA I G+ EL T S
Sbjct: 91 MLLSSYLLYPGLPLLAYV----LWWFGVALQLFFSAWFIYSLFRGKKFELETIT----PS 142
Query: 472 LLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMMMFSGFGV 513
+ VG + + + + V +F G G
Sbjct: 143 WFLPP--------VGIIVASLTASVLLGAYFVIGYVFFGAGF 176
>gnl|CDD|236945 PRK11644, PRK11644, sensory histidine kinase UhpB; Provisional.
Length = 495
Score = 29.2 bits (66), Expect = 7.9
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 445 LLFTTIVYPLTGQPMELTRFTMFNCTSLLVVFIA 478
LLF ++ G P EL+RFT F C ++ ++ +A
Sbjct: 188 LLFVLSIWLQLGLPDELSRFTPF-CLAIPIIALA 220
>gnl|CDD|226415 COG3899, COG3899, Predicted ATPase [General function prediction
only].
Length = 849
Score = 29.3 bits (66), Expect = 8.5
Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 28/151 (18%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT---NGHSRNI------NAFRRVSCYI 113
+++ + G SG GKS+L++ + G + + RNI AFR + +
Sbjct: 25 EVVLVAGESGIGKSALVNEVHK-PITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMGQL 83
Query: 114 QQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
+ + L +++ LG +G + LELI R L+ T
Sbjct: 84 LSESDTRILSWRARLLAALG-----------ENGQVIIDVIPELELIIGKRPPALELSPT 132
Query: 174 SNPNDQKKRLSIALELINN-----PRVMFLD 199
+ N + L+ + P V+ L+
Sbjct: 133 AAQN--RFNLAFLRFIQVFTAEEHPLVIVLE 161
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 29.1 bits (65), Expect = 8.8
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 145 LSGGQKK------RLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE 188
LSGG+K R+++A L N+ ++ +DEPT D++ L +E
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIE 851
>gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction
only].
Length = 200
Score = 28.4 bits (64), Expect = 8.8
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF 106
IA G S GKSSL++ L+ ++ T + T G ++ IN F
Sbjct: 27 IAFAGRSNVGKSSLINALTNQKNLARTSK--TPGRTQLINFF 66
>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase.
Length = 183
Score = 28.1 bits (63), Expect = 8.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 64 LIAIMGPSGAGKSSLLDVL 82
I + GPSG GKS + L
Sbjct: 4 PIVLSGPSGVGKSHIKKAL 22
>gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This
protein is found within operons which code for
polyhedral organelles containing the enzyme
ethanolamine ammonia lyase. The function of this gene
is unknown, although the presence of an N-terminal
GxxGxGK motif implies a GTP-binding site [Energy
metabolism, Amino acids and amines].
Length = 142
Score = 27.8 bits (62), Expect = 8.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 65 IAIMGPSGAGKSSLLDVLSGY 85
I +G G GK++L L G
Sbjct: 3 IMFIGSVGCGKTTLTQALQGE 23
>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction
only].
Length = 296
Score = 28.6 bits (64), Expect = 9.3
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 65 IAIMGPSGAGKSSLLDVL 82
+ +MG +GAGKSSL++ L
Sbjct: 42 VLLMGATGAGKSSLINAL 59
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.399
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,962,566
Number of extensions: 2934610
Number of successful extensions: 4745
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4389
Number of HSP's successfully gapped: 870
Length of query: 606
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 503
Effective length of database: 6,369,140
Effective search space: 3203677420
Effective search space used: 3203677420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.1 bits)