RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13765
(606 letters)
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 100 bits (252), Expect = 7e-24
Identities = 59/300 (19%), Positives = 107/300 (35%), Gaps = 83/300 (27%)
Query: 9 SNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIM 68
S+ SG + + I+ + ++ K +LK + + +
Sbjct: 3 SHHHHHHSSGLVPRGSHML-IQLDQIG--------RMKQGKTILKKISWQIAKGDKWILY 53
Query: 69 GPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSR-----NINAFRR----VSCYIQQDDRL 119
G +GAGK++LL++L+ Y +G + G + R+ VS + + +
Sbjct: 54 GLNGAGKTTLLNILNAY-EPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLE--KF 110
Query: 120 QPLLTIENV--------------------------MSLLGLDESQNTRSSQLSGGQKKRL 153
Q + +V + L+G+ LS G+K+R+
Sbjct: 111 QEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRV 170
Query: 154 SIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQC 213
IA R A L+ P+V+ LDEP GLD +
Sbjct: 171 MIA-------R---------------------A--LMGQPQVLILDEPAAGLDFIARESL 200
Query: 214 IKLLKMISQQGR--TIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNL 271
+ +L +S +I H + F ++ LL GQ + QGA + + L+S N+
Sbjct: 201 LSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQSIQQGAVEDI---LTSENM 256
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 98.0 bits (245), Expect = 4e-23
Identities = 57/236 (24%), Positives = 97/236 (41%), Gaps = 52/236 (22%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAF-- 106
L L G + +++ ++GP+GAGKS+LL ++G S G I G + + A+
Sbjct: 13 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAG--QPLEAWSA 68
Query: 107 ----RRVSCYIQQDDRLQPLLT-----------------IENVMSLLGLDESQNTRSSQL 145
+ Y+ Q + +V L LD+ ++QL
Sbjct: 69 TKLALHRA-YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQL 127
Query: 146 SGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205
SGG+ +R+ +A V+ L I + +++ LDEP L
Sbjct: 128 SGGEWQRVRLA-------AVV----------------LQITPQANPAGQLLLLDEPMNSL 164
Query: 206 DSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261
D S K+L +SQQG I+ + H + TL + + +LL GG+ L G ++
Sbjct: 165 DVAQQSALDKILSALSQQGLAIVMSSHDLNHTL-RHAHRAWLLKGGKMLASGRREE 219
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 98.0 bits (245), Expect = 4e-23
Identities = 49/295 (16%), Positives = 112/295 (37%), Gaps = 56/295 (18%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+ ++++ G +++ L+N+ + + + G +G+GKS+LL ++
Sbjct: 3 IEVVNVSHIFHRGTPLEKK---ALENVSLVINEGECLLVAGNTGSGKSTLLQIV-----A 54
Query: 89 GV----TGQILTNGHSRNINAFRR-------------VSCYIQQDDRLQPLLTIENVMSL 131
G+ +G +L +G + RR + + + +N
Sbjct: 55 GLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAV----KN---- 106
Query: 132 LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND----QKKRLSIAL 187
D + A+E + F D P +K+R++IA
Sbjct: 107 FYPDRDP-----------VPLVKKAMEFVGLDFDSFKDRV----PFFLSGGEKRRVAIAS 151
Query: 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYL 247
+++ P ++ LDEP GLD + + +++++ G+T+I H T+ D+V +
Sbjct: 152 VIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVV 210
Query: 248 LSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVEQ 302
L G+ ++ G + L + + L + + + ++E+
Sbjct: 211 LEKGKKVFDGTRMEF---LEKYDPRFFTSKMLVMRRLVLKGEDPFSMSDDELLER 262
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 93.9 bits (234), Expect = 3e-20
Identities = 42/233 (18%), Positives = 86/233 (36%), Gaps = 50/233 (21%)
Query: 10 NSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMG 69
N +E+ +++ + S K + VL G F ++++ +MG
Sbjct: 326 NLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMG 385
Query: 70 PSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT---- 124
+G GK++L+ +L+G + + GQ + N+ + + + ++ L
Sbjct: 386 ENGTGKTTLIKLLAGALKPDE--GQDIPKL---NV-SMKPQKIAPKFPGTVRQLFFKKIR 439
Query: 125 --------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
+V+ L +D+ + LSGG+ +R++I L
Sbjct: 440 GQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVL------------------- 480
Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTII 228
A L + +DEP+ LDS+ C K+++ I +T
Sbjct: 481 ---------A--LGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
Score = 72.4 bits (178), Expect = 2e-13
Identities = 41/264 (15%), Positives = 88/264 (33%), Gaps = 80/264 (30%)
Query: 48 PKDVLKNLCGRFPSN-------------QLIAIMGPSGAGKSSLLDVLSG--------YR 86
P ++ ++ R+ +N Q++ ++G +G GKS+ L +L+G +
Sbjct: 76 PTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD 135
Query: 87 SNGVTGQILTNGHSRNI-NAFRRV----------SCYIQQ--DDRLQPLLT--------- 124
+I+ + N F ++ Y+ P+
Sbjct: 136 DPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM 195
Query: 125 ------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPND 178
++ + +L L+ +LSGG+
Sbjct: 196 EKSPEDVKRYIKILQLENVLKRDIEKLSGGEL---------------------------- 227
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
Q R +I + + V DEP++ LD + ++++ + + +IC H + L
Sbjct: 228 Q--RFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVL 284
Query: 239 FQMFDQVYLLSGGQCLYQGATDQL 262
+ D V ++ G +Y T
Sbjct: 285 DYLSDFVCIIYGVPSVYGVVTLPA 308
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 87.8 bits (218), Expect = 1e-19
Identities = 46/252 (18%), Positives = 81/252 (32%), Gaps = 65/252 (25%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+ K++ T L K + L+N+ + + I+GP+G+GK++LL +SG
Sbjct: 2 IQLKNVGIT----LSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPY 56
Query: 89 GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPL-LTI-ENV-----------------M 129
+G I NG + R Y + +T+ + V +
Sbjct: 57 --SGNIFING--MEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEML 112
Query: 130 SLLGLDESQNTRS-SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE 188
L L E R +LS GQ + +
Sbjct: 113 KALKLGEEILRRKLYKLSAGQSVLVRTS-------LA----------------------- 142
Query: 189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIH-QPSATLFQMFDQVYL 247
L + P ++ LDEP +D+ + +K + G+ I H +
Sbjct: 143 LASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHELDML--NLYKEYKAY 197
Query: 248 LSGGQCLYQGAT 259
G L +
Sbjct: 198 FLVGNRLQGPIS 209
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 85.6 bits (213), Expect = 3e-19
Identities = 50/238 (21%), Positives = 94/238 (39%), Gaps = 74/238 (31%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVL------ 82
++ +++ + ++LK + + ++I+G SG+GKS+LL +L
Sbjct: 5 LRAENIKKVIRGY--------EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP 56
Query: 83 -SG-YRSNGVTGQILTNGHSRN-INAFRRVSC-YIQQDDRLQPLLT-IENVM-------- 129
G G + + ++ R ++ Q L P LT +ENV+
Sbjct: 57 TEGKVFLEGKE----VDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGK 112
Query: 130 -------------SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
S LGL + + + +LSGG+++R++IA R
Sbjct: 113 PKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIA-------RA----------- 154
Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP 234
L N P ++F DEPT LDS + + + + I++ G +I+ H+
Sbjct: 155 ------------LANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 86.1 bits (214), Expect = 4e-19
Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 57/189 (30%)
Query: 69 GPSGAGKSSLLDVLSGY-RSNGVTGQILTNGHS--RNINAFRRVSCYIQQDDRLQPLLT- 124
GP+GAGK++ L ++S + + G + G + + R++ Y+ ++ +
Sbjct: 48 GPNGAGKTTTLRIISTLIKPSS--GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQG 105
Query: 125 ---------------------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP 163
+E + GL E R S S G
Sbjct: 106 IEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKG--------------- 150
Query: 164 RVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ 223
M ++L IA L+ NPR+ LDEPT+GLD + + K+LK SQ+
Sbjct: 151 --M-------------VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 195
Query: 224 GRTIICTIH 232
G TI+ + H
Sbjct: 196 GLTILVSSH 204
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 86.1 bits (214), Expect = 7e-19
Identities = 68/295 (23%), Positives = 110/295 (37%), Gaps = 86/295 (29%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
+K ++L Y S G LK + ++ AI+G +G GKS+L N
Sbjct: 8 LKVEELNYNYSDG-------THALKGINMNIKRGEVTAILGGNGVGKSTLFQNF-----N 55
Query: 89 GV----TGQILTNGH-----SRNINAFRR-------------VSCYIQQD---------- 116
G+ +G+IL + + I R S + QD
Sbjct: 56 GILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL 115
Query: 117 DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
+ ++N + G++ ++ + LS GQKKR++IA L VM
Sbjct: 116 PEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL-----VM---------- 160
Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPS 235
P+V+ LDEPT GLD S+ +KLL + ++ G TII H
Sbjct: 161 ---------------EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205
Query: 236 ATLFQMFDQVYLLSGGQCLYQGATDQL---VNYLSSVNLPCPKYHNPADFVIELA 287
D V+++ G+ + QG ++ + VNL P + L
Sbjct: 206 IVP-LYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLP-------RIGHLM 252
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 84.5 bits (210), Expect = 1e-18
Identities = 49/242 (20%), Positives = 87/242 (35%), Gaps = 68/242 (28%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN----------- 97
+ + L ++A++G +G GKS+LLD+L G + G+I
Sbjct: 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP-IQGKIEVYQSIGFVPQFFS 76
Query: 98 -------------GHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQ 144
G S +IN F + D ++ + L L +
Sbjct: 77 SPFAYSVLDIVLMGRSTHINTFAKPK---SHDYQV-----AMQALDYLNLTHLAKREFTS 128
Query: 145 LSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTG 204
LSGGQ++ ++ IA + + +++ LDEPT+
Sbjct: 129 LSGGQRQL------------IL------------------IARAIASECKLILLDEPTSA 158
Query: 205 LDSQSCSQCIKLLKMISQ-QGRTIICTIHQP-SATLFQMFDQVYLLSGGQCLYQGATDQL 262
LD + + LL ++Q Q T++ T HQP ++ LL+ G T +
Sbjct: 159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAI--ANKTLLLNKQN-FKFGETRNI 215
Query: 263 VN 264
+
Sbjct: 216 LT 217
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 87.8 bits (218), Expect = 2e-18
Identities = 36/199 (18%), Positives = 64/199 (32%), Gaps = 48/199 (24%)
Query: 44 FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI 103
K+ L G ++I I+GP+G GK++ +L G G + + +
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVG-EITADEGSVTPEK--QIL 332
Query: 104 NAFRRVSCYIQQDDRLQPLLT-------------IENVMSLLGLDESQNTRSSQLSGGQK 150
+ + + D +Q L E V L L + + LSGG+
Sbjct: 333 SYKPQRI-FPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGEL 391
Query: 151 KRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSC 210
Q +L IA L + LD+P++ LD +
Sbjct: 392 ----------------------------Q--KLYIAATLAKEADLYVLDQPSSYLDVEER 421
Query: 211 SQCIKLLK-MISQQGRTII 228
K +K + ++
Sbjct: 422 YIVAKAIKRVTRERKAVTF 440
Score = 75.1 bits (185), Expect = 2e-14
Identities = 40/265 (15%), Positives = 90/265 (33%), Gaps = 77/265 (29%)
Query: 32 KDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG---YRSN 88
++ + GFK K +N ++ ++G +G GK+++L +L+G
Sbjct: 3 GEVIHRYKVN-GFKLFGLPTPK-------NNTILGVLGKNGVGKTTVLKILAGEIIPNFG 54
Query: 89 GVTGQILTNGHSRNINAFR--RVSCYIQQ--DDRLQPLLTIENV---------------- 128
++ + + FR + Y ++ + L+ + I+ V
Sbjct: 55 DPNSKVGKD---EVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILT 111
Query: 129 -----------MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
LL + N ++ LSGG +R ++
Sbjct: 112 KIDERGKKDEVKELLNMTNLWNKDANILSGGGLQR------------LL----------- 148
Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT 237
+A L+ V D+P++ LD + K ++ + + + +I H
Sbjct: 149 -------VAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL-LKNKYVIVVDHD-LIV 199
Query: 238 LFQMFDQVYLLSGGQCLYQGATDQL 262
L + D ++++ G +Y +
Sbjct: 200 LDYLTDLIHIIYGESSVYGRVSKSY 224
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 80.6 bits (200), Expect = 2e-17
Identities = 36/226 (15%), Positives = 82/226 (36%), Gaps = 66/226 (29%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGY-RS 87
++ +DL+ K VL+ + ++ GP+G GK++LL +S Y +
Sbjct: 11 LEIRDLS---------VGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP 61
Query: 88 NGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT--------------------IEN 127
G+I+ NG I + ++ ++ + ++ I +
Sbjct: 62 L--KGEIIYNGV--PITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMD 117
Query: 128 VMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL 187
+ + + + + + +LS G +R+ +A L
Sbjct: 118 ALESVEVLDLKK-KLGELSQGTIRRVQLA----------------------------STL 148
Query: 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTIICTIH 232
+ N + LD+P +D S + +K + ++ ++G II +
Sbjct: 149 --LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 192
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 85.1 bits (211), Expect = 2e-17
Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 39/176 (22%)
Query: 20 SLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
+ E + V K L+ G ++I I+GP+G GK++ +
Sbjct: 340 EIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFV 399
Query: 80 DVLSG--------------------YRS---NGVTGQILTNGHSRNINAFRRVSCYIQQD 116
+L+G Y G ++L+ S +N+
Sbjct: 400 KMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYK------- 452
Query: 117 DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
++ LG+ + + LSGG+ +R++IA L+ + + LDEP+
Sbjct: 453 ---------TELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS 499
Score = 72.3 bits (178), Expect = 2e-13
Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 29/174 (16%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG---- 84
I +L + + + ++ I+GP+G GK++ + +L+G
Sbjct: 84 ISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIP 143
Query: 85 -YRSNGVTGQILTNGHSRN------------------------INAFRRVSCYIQQDDRL 119
+ + + N + + ++
Sbjct: 144 NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV 203
Query: 120 QPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
+ E V+ L L+ + QLSGG+ +R++IA L+ F DEP++
Sbjct: 204 DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSS 257
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 82.8 bits (205), Expect = 2e-16
Identities = 69/288 (23%), Positives = 122/288 (42%), Gaps = 83/288 (28%)
Query: 13 SSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSG 72
S S+SG + ++FK++ ++ + + +LK L + S Q +A++G SG
Sbjct: 373 SFSKSGHKPDNIQG-NLEFKNIHFSYPSRKEVQ-----ILKGLNLKVKSGQTVALVGNSG 426
Query: 73 AGKSSLLDVLSG-YRSNGVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLL---TI 125
GKS+ + ++ Y + + G + +G + N+ R + + Q+ P+L TI
Sbjct: 427 CGKSTTVQLMQRLY--DPLDGMVSIDGQDIRTINVRYLREIIGVVSQE----PVLFATTI 480
Query: 126 -ENVMSLLGLDESQ------------------------NT----RSSQLSGGQKKRLSIA 156
EN+ G ++ +T R +QLSGGQK+R++IA
Sbjct: 481 AENI--RYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIA 538
Query: 157 LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKL 216
R L+ NP+++ LDE T+ LD++S +
Sbjct: 539 -------RA-----------------------LVRNPKILLLDEATSALDTESEAVVQAA 568
Query: 217 LKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
L +GRT I H+ S T+ + D + GG + QG D+L+
Sbjct: 569 LDKAR-EGRTTIVIAHRLS-TV-RNADVIAGFDGGVIVEQGNHDELMR 613
Score = 80.9 bits (200), Expect = 7e-16
Identities = 65/297 (21%), Positives = 103/297 (34%), Gaps = 99/297 (33%)
Query: 13 SSSESGTSLETADRIEIKFKDLTYTVSTGLGFK--QEPKD-VLKNLCGRFPSNQLIAIMG 69
S S G + ++F + F P VL+ L Q +A++G
Sbjct: 1016 SYSTQGLKPNMLEG-NVQFSGVV--------FNYPTRPSIPVLQGLSLEVKKGQTLALVG 1066
Query: 70 PSGAGKS---SLL----DVLSGYRSNGVTGQILTNGH---SRNINAFRRVSCYIQQDDRL 119
SG GKS LL D ++G + +G N+ R + Q+
Sbjct: 1067 SSGCGKSTVVQLLERFYDPMAG--------SVFLDGKEIKQLNVQWLRAQLGIVSQE--- 1115
Query: 120 QPLL---TI-EN---------------------------VMSL-LGLDESQNTRSSQLSG 147
P+L +I EN + SL + + +QLSG
Sbjct: 1116 -PILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSG 1174
Query: 148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207
GQK+R++IA R L+ P ++ LDE T+ LD+
Sbjct: 1175 GQKQRIAIA-------RA-----------------------LVRQPHILLLDEATSALDT 1204
Query: 208 QSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
+S + L +GRT I H+ S Q D + ++ G+ G QL+
Sbjct: 1205 ESEKVVQEALDKAR-EGRTCIVIAHRLSTI--QNADLIVVIQNGKVKEHGTHQQLLA 1258
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 77.6 bits (192), Expect = 3e-16
Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 73/242 (30%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVL------ 82
+K K++T T G +E LKN+ + ++IMGPSG+GKS++L+++
Sbjct: 2 VKLKNVTKTYKMG----EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP 57
Query: 83 -SG-YRSNGVTGQILTNGHSRNINAFRRVSC-YIQQDDRLQPLLT-IENVM--------- 129
G + + L + RR ++ Q L PLLT +ENV
Sbjct: 58 TEGEVYIDNIKTNDLD---DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRG 114
Query: 130 ---------------SLLGL-DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
+ L + N + +QLSGGQ++R++IA R
Sbjct: 115 AMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA-------RA-------- 159
Query: 174 SNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMI-SQQGRTIICTIH 232
L NNP ++ D+PT LDS++ + ++LLK + + G+T++ H
Sbjct: 160 ---------------LANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Query: 233 QP 234
Sbjct: 205 DI 206
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 80.0 bits (198), Expect = 5e-16
Identities = 36/233 (15%), Positives = 79/233 (33%), Gaps = 70/233 (30%)
Query: 20 SLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
++ E + V+ K L+ G ++I I+GP+G GK++ +
Sbjct: 270 EIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFV 329
Query: 80 DVLSG--------------------YRSN---GVTGQILTNGHSRNINAFRRVSCYIQQD 116
+L+G Y G ++L+ + +N+
Sbjct: 330 KMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYK------- 382
Query: 117 DRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
++ LG+ + + ++LSGG+
Sbjct: 383 ---------TELLKPLGIIDLYDREVNELSGGEL-------------------------- 407
Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLK-MISQQGRTII 228
Q R++IA L+ + + LDEP+ LD + + ++ ++ + +T +
Sbjct: 408 --Q--RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
Score = 66.2 bits (162), Expect = 1e-11
Identities = 36/235 (15%), Positives = 77/235 (32%), Gaps = 70/235 (29%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSG-----YRSNGVTGQILTNG--------HSRNI---- 103
++ I+GP+G GKS+ + +L+G + + + + +
Sbjct: 46 EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGE 105
Query: 104 ------------NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKK 151
I+ + +E V+ L L+ LSGG+ +
Sbjct: 106 IRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQ 165
Query: 152 RLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCS 211
R V IA L+ N F DEP++ LD +
Sbjct: 166 R------------VA------------------IAAALLRNATFYFFDEPSSYLDIRQRL 195
Query: 212 QCIKLLKMISQQGRTIICTIHQPSAT-----LFQMFDQVYLLSGGQCLYQGATDQ 261
+ ++ +S++G++++ L + D ++++ G +Y +
Sbjct: 196 NAARAIRRLSEEGKSVLV------VEHDLAVLDYLSDIIHVVYGEPGVYGIFSQP 244
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 77.1 bits (191), Expect = 5e-16
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 38/175 (21%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
+I F+++ + +K + +L N+ ++I I+G SG+GKS+L ++ Y
Sbjct: 7 DITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 87 SNGVTGQILTNGH---SRNINAFRRVSCYIQQDDRL------------QPLLTIENVMS- 130
GQ+L +GH + N RR + QD+ L P +++E V+
Sbjct: 61 PEN--GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYA 118
Query: 131 ---------LLGLDESQNT----RSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
+ L E NT + + LSGGQ++R++IA L+NNP+++ DE T
Sbjct: 119 AKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEAT 173
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 76.1 bits (188), Expect = 1e-15
Identities = 63/280 (22%), Positives = 116/280 (41%), Gaps = 71/280 (25%)
Query: 15 SESGTSLETADRIEIKFKDLTYTVSTGLGFKQEP-KDVLKNLCGRFPSNQLIAIMGPSGA 73
S S TS E + I+F D+ + + ++ LK++ PS A++G +G+
Sbjct: 4 SFSLTSHEKKFGVNIEFSDVNF------SYPKQTNHRTLKSINFFIPSGTTCALVGHTGS 57
Query: 74 GKSSLLDVLSGYRSNGVTGQILTNGH---SRNINAFRRVSCYIQQDDRL----------- 119
GKS++ +L YR G I G N N+ R + + QD L
Sbjct: 58 GKSTIAKLL--YRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILY 115
Query: 120 -QPLLTIENVMS----------LLGLDESQNT----RSSQLSGGQKKRLSIALELINNPR 164
+ T E V+ + L + +T + +LSGG+++R++IA R
Sbjct: 116 GKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA-------R 168
Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG 224
L+ +P+++ DE T+ LDS++ K ++ + +
Sbjct: 169 C-----------------------LLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-KN 204
Query: 225 RTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
RT+I H+ S T+ + + LL+ G+ + +G L+
Sbjct: 205 RTLIIIAHRLS-TISSA-ESIILLNKGKIVEKGTHKDLLK 242
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 74.5 bits (184), Expect = 5e-15
Identities = 53/258 (20%), Positives = 91/258 (35%), Gaps = 90/258 (34%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKS---SLL----DVLSGYRSNGVTGQILTNGH---S 100
VL+ L ++ A++GP+G+GKS +LL G ++L +G
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG--------KVLLDGEPLVQ 85
Query: 101 RNINAFRRVSCYIQQDDRLQPLL---TI-ENVMSLLGLDESQ------------------ 138
+ + + Q+ PLL + EN+ GL +
Sbjct: 86 YDHHYLHTQVAAVGQE----PLLFGRSFRENI--AYGLTRTPTMEEITAVAMESGAHDFI 139
Query: 139 -------NT----RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL 187
+T +QLSGGQ++ +++A R
Sbjct: 140 SGFPQGYDTEVGETGNQLSGGQRQAVALA-------RA---------------------- 170
Query: 188 ELINNPRVMFLDEPTTGLDSQSCSQCIKLL-KMISQQGRTIICTIHQPSATLFQMFDQVY 246
LI PR++ LD T+ LD+ + + +LL + RT++ Q S + +
Sbjct: 171 -LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHIL 227
Query: 247 LLSGGQCLYQGATDQLVN 264
L G QG QL+
Sbjct: 228 FLKEGSVCEQGTHLQLME 245
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 73.4 bits (181), Expect = 1e-14
Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 39/155 (25%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS-NGV----TGQILTNGH-----S 100
VLK + +++ ++GPSG+GKS+ L R N + G+I+ +G
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFL------RCLNLLEDFDEGEIIIDGINLKAKD 92
Query: 101 RNINAFRRVSCYIQQDDRLQPLLTI-ENV-------------------MSLL---GLDES 137
N+N R + Q L P +T+ N+ M LL GL +
Sbjct: 93 TNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDK 152
Query: 138 QNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
+ LSGGQ +R++IA L P++M DEPT
Sbjct: 153 AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPT 187
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 72.1 bits (178), Expect = 2e-14
Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 60/187 (32%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKS---SLL----DV 81
+ + + + + +L+++ N +IA GPSG GKS SLL
Sbjct: 2 LSARHVDFAYDDS-------EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP 54
Query: 82 LSGYRSNGVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLL---TI-EN------- 127
+G +I +G + ++ +R ++ QD + TI EN
Sbjct: 55 TAG--------EITIDGQPIDNISLENWRSQIGFVSQD----SAIMAGTIRENLTYGLEG 102
Query: 128 -------------------VMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMF 167
V ++ L+ R ++SGGQ++RL+IA + NP+++
Sbjct: 103 DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILM 162
Query: 168 LDEPTTS 174
LDE T S
Sbjct: 163 LDEATAS 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 75.7 bits (185), Expect = 2e-14
Identities = 85/604 (14%), Positives = 174/604 (28%), Gaps = 154/604 (25%)
Query: 8 LSNSLSSSESGTSLETADRIEIK---------FKDLTYTVSTGLGFKQEPKDVLKNLCGR 58
L + + + + S+ T IE + F Y VS + +P L+
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK--YNVS-----RLQPYLKLRQALLE 146
Query: 59 FPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT----GQI--LTNGHSRNINAFRRVSCY 112
+ + I G G+GK+ + L S V +I L + +
Sbjct: 147 LRPAKNVLIDGVLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV------ 198
Query: 113 IQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMF-LDEP 171
++ LQ LL + D S N + S + L L+ + L
Sbjct: 199 LEM---LQKLLYQIDPNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYENCLLVLLN- 252
Query: 172 TTSNPNDQK------KRL------SIALELINNPR-VMFLDEPTTGL-DSQSCSQCIKLL 217
N K L + L + LD + L + S +K L
Sbjct: 253 -VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYH 277
Q + T + P + + + G + N+ K+
Sbjct: 312 DCRPQDLPREVLTTN-P--RRLSIIAE--SIRDGLATWD-------NW---------KH- 349
Query: 278 NPADFVIELASGEYGVDNINAMVEQAQNDVKPDKKTKKTKHCTYSNQILQDTSYSNQLGV 337
D + ++E + N ++P + + +
Sbjct: 350 -------------VNCDKLTTIIESSLNVLEPA----EYRKMFDRLSVFPP-------SA 385
Query: 338 LLSRGLLKVK-RDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHV 396
+ LL + D + + ++VN L + + E S+ ++ + +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISI---PSIYLELKVK-- 438
Query: 397 MTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTG 456
+ N + SI+ +H Y++ + S +L+ + + ++ I + L
Sbjct: 439 ----LENEYA--LHRSIV--DH----YNIPKTFDSDDLIPPYLDQY---FYSHIGHHLKN 483
Query: 457 QPMELT-RFTMFNCTSLLVVFIAQSV---GYMVGAVFNVVNGTFVGPVLVVPMMMFSGFG 512
+E R T+F L F+ Q + A +++N
Sbjct: 484 --IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN------------------- 522
Query: 513 VSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQCDELYCHYKEPKKFLQTVSQP 572
++ + Y Y+ Y + + + +E K L+
Sbjct: 523 -TLQQLKFYKP------YICDNDPKYERLVNAILDFLPKIEENLICSKY-TDLLRIALMA 574
Query: 573 SDNF 576
D
Sbjct: 575 EDEA 578
Score = 57.6 bits (138), Expect = 9e-09
Identities = 76/550 (13%), Positives = 160/550 (29%), Gaps = 175/550 (31%)
Query: 102 NINAFRR-VSCY-IQQDDRLQPLLTIENVMSLLGL-DESQNTRS--SQLSGGQKKRLSIA 156
+AF C +Q D + +L+ E + ++ D T L Q++ +
Sbjct: 25 FEDAFVDNFDCKDVQ--DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 157 LELINNPRVMFLDEPTTSNPNDQKKRLSIALELINN-------------PRVMFLDEPTT 203
+E + FL P + + +E + R+ +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 204 GLDSQSCSQCIKLLKMISQQGRTI----ICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259
L ++ + + ++ G+T +C +M +++ L+ C
Sbjct: 143 ALLELRPAKNVLIDGVLGS-GKTWVALDVC---LSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 260 -DQLVNYLSSVNLPCPKYHNPADFVIELASG-EYGVDNINAMVEQAQN--------DVKP 309
+ L L ++ P + + +D + + +++ +V+
Sbjct: 199 LEMLQKLLYQID---PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ- 254
Query: 310 DKKTKKT--KHCTYSNQIL---QDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVA 364
+ K C +IL + ++ L + + TLT
Sbjct: 255 NAKAWNAFNLSC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP---------- 300
Query: 365 LMLGVLFQNSGEYASSVLINY-NLLFSILIHHVMTSMMLNILTFPMEMSI---LIKEHFN 420
+ S+L+ Y + L V+T T P +SI I++
Sbjct: 301 -----------DEVKSLLLKYLDCRPQDLPREVLT-------TNPRRLSIIAESIRDGLA 342
Query: 421 RWYSLKAYY---------VSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTRFTMFNCTS 471
W + K S+N+L+ P E + MF+
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLE---------------------PAEYRK--MFD--- 376
Query: 472 LLVVFIAQSVGYMVGAVFNVVNGTFVGP--VLVV---------PMMMFSGFGVSINDIPK 520
L VF S ++ P +L + M++ +N + K
Sbjct: 377 RLSVF-PPSA--------HI-------PTILLSLIWFDVIKSDVMVV-------VNKLHK 413
Query: 521 Y---MRWGSELSYLRYGLEGYVAAIYGLDRKTL-QCDELYC-------HYKEPKKFLQT- 568
Y + E + +I + + + + Y HY PK F
Sbjct: 414 YSLVEKQPKESTI----------SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 569 -VSQPSDNFW 577
+ D ++
Sbjct: 464 LIPPYLDQYF 473
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 73.9 bits (181), Expect = 8e-14
Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 29/141 (20%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108
K +L R + I GP+G GKS+L+ ++ G T R
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN----GQVDGFPTQEECR------- 496
Query: 109 VSCYIQQD-DRLQPLLT---------------IENVMSLLGL-DESQNTRSSQLSGGQKK 151
+ Y++ D D + I++ + G DE S LSGG K
Sbjct: 497 -TVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKM 555
Query: 152 RLSIALELINNPRVMFLDEPT 172
+L++A ++ N ++ LDEPT
Sbjct: 556 KLALARAVLRNADILLLDEPT 576
Score = 58.1 bits (140), Expect = 7e-09
Identities = 28/174 (16%), Positives = 51/174 (29%), Gaps = 20/174 (11%)
Query: 19 TSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRF-PSNQLIAIMGPSGAGKSS 77
T E +D + + + + ++ I +
Sbjct: 756 TPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTY 815
Query: 78 LLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLL-------------- 123
+ N NA+ ++ ++ +
Sbjct: 816 EYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPL 875
Query: 124 ---TIENVMSLLGL--DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
IE S+LGL + ++R LSGGQK +L +A P ++ LDEPT
Sbjct: 876 TRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPT 929
Score = 40.8 bits (95), Expect = 0.001
Identities = 22/167 (13%), Positives = 53/167 (31%), Gaps = 15/167 (8%)
Query: 43 GFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG---- 98
+ K + ++ + + IA++GP+GAGKS+L++VL+G +G++ T+
Sbjct: 680 QYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG-ELLPTSGEVYTHENCRI 738
Query: 99 -----HSRNINAFRRVSCYIQQDDRLQPLLT-----IENVMSLLGLDESQNTRSSQLSGG 148
H+ + + D + ++ G
Sbjct: 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGT 798
Query: 149 QKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRV 195
++ I + K + + ++N +
Sbjct: 799 PRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWI 845
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 72.0 bits (177), Expect = 1e-13
Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 67/264 (25%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDV--LKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86
IK ++T F Q + + L N+ P+ Q+ ++G SGAGKS+L+ ++
Sbjct: 25 IKLSNITKV------FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78
Query: 87 --SNG---VTGQILTNGHSRNINAFRR-VSCYIQQDDRLQPLLTIENVM----------- 129
+ G V GQ LT + RR + Q + L NV
Sbjct: 79 RPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD 138
Query: 130 ----------SLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQ 179
SL+GL + ++ S LSGGQK+R++IA L +NP+V+
Sbjct: 139 EVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVL------------- 185
Query: 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATL 238
L D+ T+ LD + ++LLK I+++ G TI+ H+ +
Sbjct: 186 ---LC--------------DQATSALDPATTRSILELLKDINRRLGLTILLITHEMDV-V 227
Query: 239 FQMFDQVYLLSGGQCLYQGATDQL 262
++ D V ++S G+ + Q ++
Sbjct: 228 KRICDCVAVISNGELIEQDTVSEV 251
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 71.5 bits (176), Expect = 3e-13
Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 51/184 (27%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
E+ KD+T ++ + K L ++ P + +A++G SG+GKS++ ++ + Y
Sbjct: 341 EVDVKDVT------FTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD 394
Query: 87 SNGVTGQILTNGHSRNINAFRRVS-----CYIQQDDRLQPLL---TIEN----------- 127
+ G I +GH ++ ++ + + Q+ L TI N
Sbjct: 395 VDS--GSICLDGH--DVRDYKLTNLRRHFALVSQN----VHLFNDTIANNIAYAAEGEYT 446
Query: 128 ----------------VMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
+ ++ GLD + LSGGQ++R++IA L+ + V+ LDE
Sbjct: 447 REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDE 506
Query: 171 PTTS 174
T++
Sbjct: 507 ATSA 510
Score = 29.5 bits (67), Expect = 3.8
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 567 QTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWR 601
S+ + +++ +L +M F+ SW+
Sbjct: 137 GATSRALVSIVREGASIIGLLTLM-----FWNSWQ 166
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 69.6 bits (171), Expect = 1e-12
Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 59/167 (35%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKS---SLL----DVLSGYRSNGVTGQILTNGH---S 100
+ ++ PS + A++GPSG+GKS SLL D SG I +GH
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASG--------TISLDGHDIRQ 410
Query: 101 RNINAFRRVSCYIQQDDRLQPLL---TI-ENVMSLLGLDESQ------------------ 138
N R + Q+ P+L +I EN+ G D+
Sbjct: 411 LNPVWLRSKIGTVSQE----PILFSCSIAENI--AYGADDPSSVTAEEIQRVAEVANAVA 464
Query: 139 ---------NT----RSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
NT + LSGGQK+R++IA L+ NP+++ LDE T
Sbjct: 465 FIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEAT 511
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 67.6 bits (166), Expect = 1e-12
Identities = 56/267 (20%), Positives = 105/267 (39%), Gaps = 74/267 (27%)
Query: 28 EIKFKDLTYTVSTGLGFKQEP-KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86
I+F+++ F ++ L+++ Q +A++GPSGAGKS++L +L +R
Sbjct: 53 RIEFENVH--------FSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL--FR 102
Query: 87 SNGVT-GQILTNGHS-RNI--NAFRRVSCYIQQDDRL------------QPLLTIENVMS 130
++ G I +G + + R + QD L + + V +
Sbjct: 103 FYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEA 162
Query: 131 ----------LLGLDESQNT----RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
++ E T R +LSGG+K+R++IA R
Sbjct: 163 AAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA-------RT----------- 204
Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSA 236
++ P ++ LDE T+ LD+ + L + RT I H+ S
Sbjct: 205 ------------ILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLS- 250
Query: 237 TLFQMFDQVYLLSGGQCLYQGATDQLV 263
T+ DQ+ ++ G + +G + L+
Sbjct: 251 TVVNA-DQILVIKDGCIVERGRHEALL 276
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 66.0 bits (162), Expect = 2e-12
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 40/157 (25%)
Query: 62 NQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNG--------HSRNIN-AFRRVSCY 112
++GP+GAGKS L++++G G++ NG R I
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGFVP------ 76
Query: 113 IQQDDRLQPLLTI-ENV-------------------MSLLGLDESQNTRSSQLSGGQKKR 152
QD L P L++ N+ LG+ + + ++LSGG+++R
Sbjct: 77 --QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQR 134
Query: 153 LSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189
+++A L+ PR++ LDEP S D K + + EL
Sbjct: 135 VALARALVIQPRLLLLDEP-LSAV-DLKTKGVLMEEL 169
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 68.8 bits (169), Expect = 2e-12
Identities = 39/184 (21%), Positives = 81/184 (44%), Gaps = 51/184 (27%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
+++F+++T+ + L+N+ + P+ + +A++G SG+GKS++ +++ Y
Sbjct: 341 DLEFRNVTF------TYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394
Query: 87 SNGVTGQILTNGHSRNINAFRRVS-----CYIQQDDRLQPLL---TIEN----------- 127
+ G IL +GH ++ + S + Q+ L T+ N
Sbjct: 395 IDE--GHILMDGH--DLREYTLASLRNQVALVSQN----VHLFNDTVANNIAYARTEEYS 446
Query: 128 ----------------VMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
+ + GLD LSGGQ++R++IA L+ + ++ LDE
Sbjct: 447 REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506
Query: 171 PTTS 174
T++
Sbjct: 507 ATSA 510
Score = 28.3 bits (64), Expect = 8.0
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 567 QTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWR 601
+ S +++ + I+M F+ SW+
Sbjct: 137 SSSSGALITVVREGASIIGLFIMM-----FYYSWQ 166
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 67.6 bits (166), Expect = 5e-12
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 50/183 (27%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
I +++ + +LK++ + +A +G SG GKS+L++++ Y
Sbjct: 339 RIDIDHVSF------QYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392
Query: 87 SNGVTGQILTNGHSRNINAFRRVSC-----YIQQDDRLQPLL---TI-EN---------- 127
GQIL +GH NI F S +QQD +L T+ EN
Sbjct: 393 VTS--GQILIDGH--NIKDFLTGSLRNQIGLVQQD----NILFSDTVKENILLGRPTATD 444
Query: 128 ---------------VMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
+M+L G D R +LSGGQK+RLSIA +NNP ++ LDE
Sbjct: 445 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA 504
Query: 172 TTS 174
T++
Sbjct: 505 TSA 507
Score = 28.7 bits (65), Expect = 6.5
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 567 QTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWR 601
+ N W +T++ L +M FFL +
Sbjct: 133 DFILTGLMNIWLDCITIIIALSIM-----FFLDVK 162
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 66.5 bits (163), Expect = 5e-12
Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 40/152 (26%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNG--------HSR 101
++ + + +++ ++GPSG+GK+++L +++G T G + G R
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKR 87
Query: 102 NIN------------------AF----RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN 139
N+ +F +RV + D R++ LL + L+ N
Sbjct: 88 NVGLVFQNYALFQHMTVYDNVSFGLREKRVP-KDEMDARVRELL------RFMRLESYAN 140
Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
+LSGGQ++R+++A L P+V+ DEP
Sbjct: 141 RFPHELSGGQQQRVALARALAPRPQVLLFDEP 172
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 65.5 bits (159), Expect = 1e-11
Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 26/163 (15%)
Query: 86 RSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQL 145
A + + + + EN + L + E + + L
Sbjct: 190 VKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFL 249
Query: 146 SGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGL 205
SGG++ L +A RL+++L L ++ LDEPT L
Sbjct: 250 SGGERIALGLAF------------------------RLAMSLYLAGEISLLILDEPTPYL 285
Query: 206 DSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248
D + + I +++ ++ +I H L D V +
Sbjct: 286 DEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVIRI 326
Score = 32.7 bits (74), Expect = 0.28
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLLD 80
+ F + I+G +G+GKSSLLD
Sbjct: 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLD 41
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 63.3 bits (155), Expect = 3e-11
Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 42/150 (28%)
Query: 62 NQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHS-RNINAFRRVSCYIQ---QD 116
+ I+GP+G+GKS+L++V++G +++ G++ N I Q
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKADE--GRVYFENKDITNKEPAELYHYGIVRTFQT 90
Query: 117 DRLQPLLT-IENVM----------------------------------SLLGLDESQNTR 141
+ +T +EN++ L L + +
Sbjct: 91 PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 150
Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEP 171
+ +LSGGQ K + I L+ NP+++ +DEP
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 62.2 bits (152), Expect = 6e-11
Identities = 41/163 (25%), Positives = 60/163 (36%), Gaps = 43/163 (26%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLL-----------------DVLSGYRSNGVTGQ 93
VLK + + + +I+I+G SG+GKS+ L +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDK--DG 78
Query: 94 ILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-ENVM-------------------SLL- 132
L + R + Q L +T+ ENVM L
Sbjct: 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLA 138
Query: 133 --GLDESQNTRS-SQLSGGQKKRLSIALELINNPRVMFLDEPT 172
G+DE + LSGGQ++R+SIA L P V+ DEPT
Sbjct: 139 KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT 181
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 63.0 bits (154), Expect = 9e-11
Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 43/138 (31%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNG--------HSRNIN----------- 104
I+GP+GAGK+ L++++G+ G+IL +G +I
Sbjct: 29 FVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPH 86
Query: 105 -------AF----RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL 153
F +++ R + + L ++ + LSGG+++R+
Sbjct: 87 MNVKKNLEFGMRMKKIK----DPKR------VLDTARDLKIEHLLDRNPLTLSGGEQQRV 136
Query: 154 SIALELINNPRVMFLDEP 171
++A L+ NP+++ LDEP
Sbjct: 137 ALARALVTNPKILLLDEP 154
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 58.7 bits (143), Expect = 2e-09
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 48/175 (27%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNG----------- 98
VL ++ +++ I+G SG GK++LL L+G+ G+I +G
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNLP 76
Query: 99 -HSRNIN-AFRRVSCYIQQDDRLQPLLTI-ENV---------------------MSLLGL 134
R + Q+ L P LT+ N+ + L G+
Sbjct: 77 VRERRLGYLV--------QEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGI 128
Query: 135 DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALEL 189
E +LSGGQ++R ++A L +P ++ LDEP S D++ R I ++
Sbjct: 129 SELAGRYPHELSGGQQQRAALARALAPDPELILLDEP-FSAL-DEQLRRQIREDM 181
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 58.6 bits (142), Expect = 2e-09
Identities = 34/181 (18%), Positives = 64/181 (35%), Gaps = 48/181 (26%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
++ KDLT + G +L+N+ Q + ++G +G+GKS+LL R
Sbjct: 19 QMTVKDLTAKYTEGGNA------ILENISFSISPGQRVGLLGRTGSGKSTLLSAF--LRL 70
Query: 88 NGVTGQILTNGHSRNINAF-----RRVSCYIQQDDRLQPLL---TI-------------- 125
G+I +G + ++ R+ I Q + T
Sbjct: 71 LNTEGEIQIDG--VSWDSITLEQWRKAFGVIPQK----VFIFSGTFRKNLDPNAAHSDQE 124
Query: 126 -----------ENVMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTT 173
+ LD LS G K+ + +A +++ +++ LDEP+
Sbjct: 125 IWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSA 184
Query: 174 S 174
Sbjct: 185 H 185
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 56.0 bits (136), Expect = 5e-09
Identities = 54/267 (20%), Positives = 98/267 (36%), Gaps = 84/267 (31%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--Y 85
E+ +++T +++ VLK++ + QL+A+ G +GAGK+SLL ++ G
Sbjct: 6 EVVMENVTAF------WEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59
Query: 86 RSNG---VTGQI--------LTNGHSR-NI--------NAFRRV--SCYIQQDDRLQPLL 123
S G +G+I + G + NI +R V +C +++D
Sbjct: 60 PSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFA-- 117
Query: 124 TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183
E +LG E LSGGQ+ R+S+A + + + LD P
Sbjct: 118 --EKDNIVLG--E----GGITLSGGQRARISLARAVYKDADLYLLDSP-----------F 158
Query: 184 S-----IALELINNPRVMFLDEPTTGLDSQSCSQCIK-LLKMISQQGRTIICTIHQPSAT 237
E+ + C+ L+ +T I +
Sbjct: 159 GYLDVLTEKEIFES--------------------CVCKLMA-----NKTRILVTSK--ME 191
Query: 238 LFQMFDQVYLLSGGQCLYQGATDQLVN 264
+ D++ +L G + G +L N
Sbjct: 192 HLKKADKILILHEGSSYFYGTFSELQN 218
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 56.2 bits (136), Expect = 8e-09
Identities = 60/295 (20%), Positives = 101/295 (34%), Gaps = 80/295 (27%)
Query: 2 AQVEFELSNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKD---VLKNLCGR 58
+ E + N + E G + T L F VLK++ +
Sbjct: 1 STTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFK 60
Query: 59 FPSNQLIAIMGPSGAGKSSLLDVLSG--YRSNG---VTGQI--------LTNGHSR-NI- 103
QL+A+ G +GAGK+SLL ++ G S G +G+I + G + NI
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII 120
Query: 104 ------NAFRRV--SCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSI 155
+R V +C +++D E +LG E LSGGQ+ R+S+
Sbjct: 121 GVSYDEYRYRSVIKACQLEEDISKFA----EKDNIVLG--E----GGITLSGGQRARISL 170
Query: 156 ALELINNPRVMFLDEPTTSNPNDQKKRLS-----IALELINNPRVMFLDEPTTGLDSQSC 210
A + + + LD P E+ +
Sbjct: 171 ARAVYKDADLYLLDSP-----------FGYLDVLTEKEIFES------------------ 201
Query: 211 SQCI-KLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
C+ KL+ +T I + + D++ +L G + G +L N
Sbjct: 202 --CVCKLMA-----NKTRILVTSK--MEHLKKADKILILHEGSSYFYGTFSELQN 247
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 52.4 bits (126), Expect = 2e-08
Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 29/128 (22%)
Query: 106 FRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSS-QLSGGQKKRLSIALELINNPR 164
F + + ++ + + R LSGG++ L +A
Sbjct: 22 FAEFTEGKYSEVVVRAEENKVRL----FVVWEGKERPLTFLSGGERIALGLAF------- 70
Query: 165 VMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQG 224
RL+++L L ++ LDEPT LD + + I +++ ++
Sbjct: 71 -----------------RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 113
Query: 225 RTIICTIH 232
+I H
Sbjct: 114 PQVILVSH 121
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 54.1 bits (131), Expect = 3e-08
Identities = 55/265 (20%), Positives = 95/265 (35%), Gaps = 80/265 (30%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--YR 86
I ++ T+T + + L + P L+A++G G GKSSLL L +
Sbjct: 4 ITVRNATFT------WARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK 57
Query: 87 SNG---VTGQI--------LTNGHSR-NI--------NAFRRV--SCYIQQDDRLQPLLT 124
G + G + + N R NI +R V +C + D + P
Sbjct: 58 VEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILP--- 114
Query: 125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184
+ +G E + LSGGQK+R+S+A + +N + D+P LS
Sbjct: 115 -SGDRTEIG--E----KGVNLSGGQKQRVSLARAVYSNADIYLFDDP-----------LS 156
Query: 185 -----IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLF 239
+ + N I M+ + +T I H +
Sbjct: 157 AVDAHVGKHIFEN--------------------VIGPKGML--KNKTRILVTHS--MSYL 192
Query: 240 QMFDQVYLLSGGQCLYQGATDQLVN 264
D + ++SGG+ G+ +L+
Sbjct: 193 PQVDVIIVMSGGKISEMGSYQELLA 217
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 53.2 bits (129), Expect = 5e-08
Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 62/242 (25%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRV 109
+K + + P Q++ ++G +GAGK++ L ++G G+I+ NG N A
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-AQKGKIIFNGQDITNKPAHVIN 79
Query: 110 S---CYIQQDDRLQPLLTI-ENVMSLLG-----------------------LDESQNTRS 142
+ + R+ P LT+ EN+M +G L E
Sbjct: 80 RMGIALVPEGRRIFPELTVYENLM--MGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202
LSGG+ + M L+I L++ P+++ +DEP+
Sbjct: 138 GTLSGGE--------------QQM----------------LAIGRALMSRPKLLMMDEPS 167
Query: 203 TGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
GL S+ ++++ I+Q+G TI+ + Q + ++ Y+L GQ + +G +L
Sbjct: 168 LGLAPILVSEVFEVIQKINQEGTTIL-LVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226
Query: 263 VN 264
++
Sbjct: 227 LD 228
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 53.3 bits (129), Expect = 5e-08
Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 32/156 (20%)
Query: 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGHS----- 100
+ + +LK + P ++ A+MGP+GAGKS+L +L+G V G+IL +G +
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 101 ---R------------------NINAFRRVSCYIQQDDRLQP---LLTIENVMSLLGLDE 136
R I F R++ + + ++ + LL DE
Sbjct: 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDE 133
Query: 137 SQNTRS--SQLSGGQKKRLSIALELINNPRVMFLDE 170
S +R SGG+KKR I L+ P LDE
Sbjct: 134 SYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDE 169
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 53.7 bits (130), Expect = 1e-07
Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 38/172 (22%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
+ F+++ + + + VL + L+A++G +G+GKS+L++++ R
Sbjct: 341 SVSFENVEFR------YFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP--RL 392
Query: 88 NGVT-GQILTNGHS-RNIN--AFRRVSCYIQQ---------------------DDRLQPL 122
G++ + R + R + Q DD +
Sbjct: 393 IDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEA 452
Query: 123 LTI----ENVMSL-LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLD 169
I + ++SL G D SGGQK+RLSIA L+ P+V+ LD
Sbjct: 453 AKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILD 504
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 52.2 bits (126), Expect = 1e-07
Identities = 43/160 (26%), Positives = 63/160 (39%), Gaps = 36/160 (22%)
Query: 47 EPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGHS----- 100
E K +L+ L ++ AIMGP+G+GKS+L L+G VT G + G
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS 90
Query: 101 ---R------------------NINAFRRVSCYIQQDDRLQPLLT-------IENVMSLL 132
R + F + + + R Q L +E ++LL
Sbjct: 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALL 150
Query: 133 GLDESQNTRS--SQLSGGQKKRLSIALELINNPRVMFLDE 170
+ E TRS SGG+KKR I + P + LDE
Sbjct: 151 KMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE 190
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 51.8 bits (125), Expect = 5e-07
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 44/162 (27%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFR 107
K VLK++ Q +A++GP+G+GK++++++L Y + GQIL +G +I +
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR--GQILVDGI--DIRKIK 423
Query: 108 RVS-----CYIQQDDRLQPLL---TI-EN-------------------------VMSL-L 132
R S + QD +L T+ EN + L
Sbjct: 424 RSSLRSSIGIVLQD----TILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPE 479
Query: 133 GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
G + LS GQ++ L+I + NP+++ LDE T++
Sbjct: 480 GYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSN 521
Score = 28.7 bits (65), Expect = 6.2
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 567 QTVSQPSDNFWSSSVTLVFILIVMKLIAYFFLSWRI 602
+ F+S VTL +I+M F ++ +
Sbjct: 149 NVLGNSIIQFFSGIVTLAGAVIMM-----FRVNVIL 179
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 50.6 bits (121), Expect = 8e-07
Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 28/141 (19%)
Query: 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM 166
+ ++ + D + + + + LSGG++ ++++L
Sbjct: 243 KYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSL--------- 293
Query: 167 FLDEPTTSNPNDQKKRLSIALELINNP-RVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
RL+IA LI N + LDEPT LD ++ ++ + + +
Sbjct: 294 ---------------RLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQ 338
Query: 226 TIICTIHQPSATLFQMFDQVY 246
II T H L + D +
Sbjct: 339 MIIIT-HHRE--LEDVADVII 356
Score = 35.6 bits (82), Expect = 0.046
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 61 SNQLIAIMGPSGAGKSSLLD----VLSGYRSNGVTGQILTNG 98
++AI+G +G+GKSS+ + L G SN I+T G
Sbjct: 24 EKGIVAIIGENGSGKSSIFEAVFFALFGAGSNFNYDTIITKG 65
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 8e-06
Identities = 78/491 (15%), Positives = 142/491 (28%), Gaps = 189/491 (38%)
Query: 136 ESQNTRSSQLSGGQKKRLSI---------ALELINNPRVMF---LDEPTTSNPNDQKKRL 183
++ +TR LS G + A +L + F L EPT D +
Sbjct: 2 DAYSTRPLTLSHGSL-EHVLLVPTASFFIASQL----QEQFNKILPEPTEGFAADDE--P 54
Query: 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD 243
+ EL+ FL ++ ++ Q ++L F+
Sbjct: 55 TTPAELV----GKFLGYVSSLVEPSKVGQFDQVLN------------------LCLTEFE 92
Query: 244 QVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIELASGEYGVDNINAMVEQA 303
YL +G ++I+A+ A
Sbjct: 93 NCYL--------EG------------------------------------NDIHALA--A 106
Query: 304 QNDVKPDKKTKKTKH---CTYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVN 360
+ + D KTK + +I+ + + S L + +
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN---SA-LFRAVGEGN-------AQ 155
Query: 361 IFVALMLGVLF--Q-NSGEYASSVLIN----YNLLFSILIHHVMTSMMLNILTFPMEMSI 413
+ +F Q N+ +Y L + Y++L LI + ++ ++
Sbjct: 156 LVA------IFGGQGNTDDYFEE-LRDLYQTYHVLVGDLIK-FSAETLSELIRTTLDAEK 207
Query: 414 LIKEHFN--RW-----------YSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPME 460
+ + N W Y L + +S L I V + T + T P E
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDY-LLSIPISCPL--IGVIQLAHYVVTAKLLGFT--PGE 262
Query: 461 LTRFT--MFNCTSLLV--VFIAQS---------VGYMVGAVFNVVNGTFVG-------PV 500
L + + LV V IA++ V + +F F+G P
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF------FIGVRCYEAYPN 316
Query: 501 LVVP--MMMFS---GFGVSINDIPKYMRWGSELSYLRYGLEGYVAAIYGLDRKTLQC--D 553
+P ++ S GV P M LS I L ++ +Q +
Sbjct: 317 TSLPPSILEDSLENNEGV-----PSPM-----LS------------ISNLTQEQVQDYVN 354
Query: 554 ELYCHYKEPKK 564
+ H K+
Sbjct: 355 KTNSHLPAGKQ 365
Score = 43.1 bits (101), Expect = 3e-04
Identities = 51/279 (18%), Positives = 87/279 (31%), Gaps = 103/279 (36%)
Query: 36 YTVST-GLGFKQEPKDVLKNLCGRFPSNQLI---AIMGPSGAGKS------SLLDVL--S 83
Y V+ LGF P ++ L G +Q + + + + +S + VL
Sbjct: 249 YVVTAKLLGF--TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 84 GYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENV---------M-SLLG 133
G R A+ S L P + +++ M S+
Sbjct: 307 GVRC-----Y----------EAYPNTS--------LPPSILEDSLENNEGVPSPMLSISN 343
Query: 134 LDESQ-----NTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE 188
L + Q N +S L G K++ I+L +N + + + + P L++ L
Sbjct: 344 LTQEQVQDYVNKTNSHLPAG--KQVEISL--VNGAKNLVV----SGPPQSL-YGLNLTLR 394
Query: 189 LINNPRVMFLDEPTTGLDSQS---CSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQV 245
P +GLD QS S+ + LK S + + H
Sbjct: 395 KAKAP---------SGLD-QSRIPFSE--RKLK-FSNRFLPVASPFHSH----------- 430
Query: 246 YLLSGGQCLYQGATDQLVNYLSSVN-------LPCPKYH 277
L A+D + L N + P Y
Sbjct: 431 LL--------VPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Score = 38.5 bits (89), Expect = 0.007
Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 22/103 (21%)
Query: 505 MMMFSGFGVSINDIPKYMRWGSELS--YLRYGLEGYVAAIYGLDRKTLQ--------CDE 554
+ +F G G + +D Y EL Y Y V + +TL ++
Sbjct: 157 VAIFGGQG-NTDD---YFE---ELRDLYQTY--HVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 555 LYCHYKEPKKFLQT-VSQPSDNFWSSS-VTLVFILIVMKLIAY 595
++ ++L+ + P ++ S ++ I ++ +L Y
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI-QLAHY 249
Score = 38.1 bits (88), Expect = 0.010
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 37/127 (29%)
Query: 277 HNPADFVIELASGEYG---VDNINAMVEQAQNDVKPDKK------TKKTKHCTYSNQ--I 325
+NP + I GE G +N +AM+ + D K + + + T+ ++ +
Sbjct: 1667 NNPVNLTI-HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 326 LQDTSYSNQ--LGVLLSRGLLKVKRDSTLTHLRIIVNIFVA---LMLGVLFQNSGEYA-- 378
L T ++ Q L L+ + + + L I + A L GEYA
Sbjct: 1726 LSATQFT-QPAL-TLMEKAAFEDLKSKGL----IPADATFAGHSL---------GEYAAL 1770
Query: 379 ---SSVL 382
+ V+
Sbjct: 1771 ASLADVM 1777
Score = 35.8 bits (82), Expect = 0.051
Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 46/125 (36%)
Query: 478 AQSVGYM----------VGAVFNVVNGTFVGPVLVVPMMMFSGFGVSINDI----PKYMR 523
+Q G M V+N + F +G SI DI P +
Sbjct: 1626 SQEQG-MGMDLYKTSKAAQDVWNRADNHF-----------KDTYGFSILDIVINNPVNLT 1673
Query: 524 W---GSELSYLRYGLEGYVAAIY--GLDRKTLQCDELY---------CHYKEPKKFL-QT 568
G + +R E Y A I+ +D K L+ ++++ ++ K L T
Sbjct: 1674 IHFGGEKGKRIR---ENYSAMIFETIVDGK-LKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 569 -VSQP 572
+QP
Sbjct: 1730 QFTQP 1734
Score = 34.3 bits (78), Expect = 0.14
Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 555 LYCHYKEPK-KFLQTVSQPSDNFW-----SSSVTLV--FILIVMKLI 593
+ + + +F + + +P++ F ++ LV F+ V L+
Sbjct: 26 SFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 46.9 bits (112), Expect = 1e-05
Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 56/187 (29%)
Query: 51 VLKNLCGRFPSNQLIAI---------------MGPSGAGKSSLLDVLSGYRSNGVT-GQI 94
++KN+ F +++A+ +GPSGAGK++ + +++G + G++
Sbjct: 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGEL 62
Query: 95 LTNGHSRNINAFRRVSCYIQQDDR----------LQPLLT-------------------- 124
+ R + + +DR L P LT
Sbjct: 63 YFDD--RLVA--SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR 118
Query: 125 --IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKR 182
+E V +L + N +LSG Q++R+++A L+ +P ++ LDEP SN D + R
Sbjct: 119 KRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEP-FSNL-DARMR 176
Query: 183 LSIALEL 189
S +
Sbjct: 177 DSARALV 183
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 44.5 bits (105), Expect = 7e-05
Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 25/123 (20%)
Query: 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRS-SQLSGGQKKRLSIALELINNPRV 165
+R Y+ + + ++ + + R LSGG++ +SI+L
Sbjct: 241 KRTKAYLDILTNGRFDIDFDDEKGGFIIKDWGIERPARGLSGGERALISISL-------- 292
Query: 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
+S+A F+DE + LD+++ + +LK + + +
Sbjct: 293 ----------------AMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNK 336
Query: 226 TII 228
I+
Sbjct: 337 VIV 339
Score = 36.4 bits (84), Expect = 0.020
Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 34/127 (26%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVL--------SGYRSNG-------------VTGQILTNGH 99
+ + + GP+GAGKSSL + + Y ++ + Q G
Sbjct: 22 QSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPNSYDYVNRNAVDGTARLVFQFERGGK 81
Query: 100 S----RNINAFRR----VSCYIQQDDRLQPLLTI-----ENVMSLLGLDESQNTRSSQLS 146
R INA +R I ++ + + + V +LG++ R+ L
Sbjct: 82 RYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVKQEVEKILGIEHRTFIRTVFLP 141
Query: 147 GGQKKRL 153
G+ +L
Sbjct: 142 QGEIDKL 148
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 38.4 bits (90), Expect = 0.005
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI 94
+ ++ G SG GKSSLL+ L G ++ +T +
Sbjct: 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDV 247
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 38.3 bits (90), Expect = 0.006
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 40/138 (28%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGHS--------RNI------------ 103
+A++GPSG+GKS+LL ++G T G+I + RN+
Sbjct: 32 MALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPH 89
Query: 104 -----N-AF----RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL 153
N AF R+ +++ + + V +L +D+ N QLSGGQ++R+
Sbjct: 90 MTVYKNIAFPLELRKAP----REEIDK---KVREVAKMLHIDKLLNRYPWQLSGGQQQRV 142
Query: 154 SIALELINNPRVMFLDEP 171
+IA L+ P V+ LDEP
Sbjct: 143 AIARALVKEPEVLLLDEP 160
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 37.1 bits (87), Expect = 0.019
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSL 78
LKN+ R P N+L+ I G SG+GKSSL
Sbjct: 14 LKNITVRIPKNRLVVITGVSGSGKSSL 40
Score = 34.0 bits (79), Expect = 0.16
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLL-DVL 82
LKN+ P + + G SG+GKSSL+ + L
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETL 631
Score = 29.7 bits (68), Expect = 3.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
LDEPT GL + + +++L + +G T+I
Sbjct: 832 LDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 36.4 bits (85), Expect = 0.024
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 40/138 (28%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGH--------SRNI------------ 103
+A++GPSG GK++ L +L+G T G+I + R +
Sbjct: 32 VALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPH 89
Query: 104 -----N-AF----RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL 153
N AF RR+S +D+ + + + L +D + + +QLSGGQ++R+
Sbjct: 90 MTVFENIAFPLRARRIS----KDEVEK---RVVEIARKLLIDNLLDRKPTQLSGGQQQRV 142
Query: 154 SIALELINNPRVMFLDEP 171
++A L+ P+V+ DEP
Sbjct: 143 ALARALVKQPKVLLFDEP 160
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 36.4 bits (85), Expect = 0.028
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSL 78
L+++ P + LI G SG+GKSSL
Sbjct: 36 LRSVDLDLPRDALIVFTGLSGSGKSSL 62
Score = 34.4 bits (80), Expect = 0.14
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLL-DVL 82
L+ + FP L ++ G SG+GKS+L+ D+L
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689
Score = 29.4 bits (67), Expect = 4.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
LDEPTTGL + + ++ + +G T+I
Sbjct: 890 LDEPTTGLHFDDIRKLLNVINGLVDKGNTVI 920
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 36.2 bits (83), Expect = 0.031
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYR 86
+A+ G +G+GKSS ++ L G
Sbjct: 72 VAVTGETGSGKSSFINTLRGIG 93
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus
radiodurans} PDB: 2vf8_A*
Length = 842
Score = 36.0 bits (84), Expect = 0.036
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSL 78
LK++ + P + L+ G SG+GKSSL
Sbjct: 26 LKDISVKVPRDALVVFTGVSGSGKSSL 52
Score = 34.8 bits (81), Expect = 0.082
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLL-DVL 82
L NL RFP + ++ G SG+GKS+L+ L
Sbjct: 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVSQAL 544
Score = 28.3 bits (64), Expect = 9.6
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 12/37 (32%)
Query: 198 LDEPTTGL---DSQSCSQCIKLLKMISQ---QGRTII 228
LDEPTTGL D + +L + + + G T+I
Sbjct: 757 LDEPTTGLHPADVE------RLQRQLVKLVDAGNTVI 787
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 36.0 bits (84), Expect = 0.038
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSL 78
LKN+ P +L+ + G SG+GKSSL
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 34.8 bits (81), Expect = 0.098
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLL-DVL 82
LKN+ + P +A+ G SG+GKS+L+ +VL
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
Score = 30.2 bits (69), Expect = 2.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
LDEPTTGL ++ + +L + G T++
Sbjct: 872 LDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 902
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 35.7 bits (83), Expect = 0.040
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 38/140 (27%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVT-GQILTNGHSRNINAFRRVSCYIQQDDR----- 118
+ ++GPSG GK++ L +++G + GQI + + ++ DR
Sbjct: 32 MILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGD--KLVAD-PEKGIFVPPKDRDIAMV 86
Query: 119 -----LQPLLTIENVMS----------------------LLGLDESQNTRSSQLSGGQKK 151
L P +T+ + ++ LLGL E N + +LSGGQ++
Sbjct: 87 FQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQ 146
Query: 152 RLSIALELINNPRVMFLDEP 171
R+++ ++ P+V +DEP
Sbjct: 147 RVALGRAIVRKPQVFLMDEP 166
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 35.2 bits (82), Expect = 0.049
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQI 94
+ + GPSG GKSS+L L+G T ++
Sbjct: 164 EGFICILAGPSGVGKSSILSRLTG--EELRTQEV 195
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2,
protein structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 35.2 bits (81), Expect = 0.051
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 39 STGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVL-SGYRSNG 89
S + +L + + + + G GAGKS+ L+ G
Sbjct: 33 SRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREG 84
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 35.2 bits (81), Expect = 0.052
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 39 STGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNG 89
ST +++ + +L L + + I G G GKS+ ++ L G
Sbjct: 56 STRPDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERG 107
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 35.3 bits (82), Expect = 0.052
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
+ LL ++E N +QLSGGQ++R+++A ++ P V+ +DEP
Sbjct: 122 VRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEP 168
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP:
c.37.1.10 PDB: 2qm7_A*
Length = 337
Score = 35.1 bits (81), Expect = 0.059
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 39 STGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVL-SGYRSNG 89
S + +D++ + + + I G G GKS+ +D L S + G
Sbjct: 32 SRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAG 83
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 35.1 bits (80), Expect = 0.066
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 10/46 (21%)
Query: 44 FKQEPKDVLKNLCGR----------FPSNQLIAIMGPSGAGKSSLL 79
F PK +++ R + L ++G GKSSLL
Sbjct: 3 FDLRPKTRREDIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLL 48
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 34.3 bits (78), Expect = 0.068
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPL 122
I +MG SG+GKSS+ + ++ + G H + DDR L
Sbjct: 19 GSIVVMGVSGSGKSSVGEAIA--EACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWL 76
Query: 123 LTIENVMS 130
I ++
Sbjct: 77 AAIGERLA 84
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 34.9 bits (81), Expect = 0.069
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSG 84
++ G SG GKSSLL+ +S
Sbjct: 172 QDKTTVFAGQSGVGKSSLLNAISP 195
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 34.4 bits (80), Expect = 0.077
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVL 82
++ + G SG GKSSLL+ +
Sbjct: 168 KGKISTMAGLSGVGKSSLLNAI 189
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 34.3 bits (78), Expect = 0.083
Identities = 28/169 (16%), Positives = 62/169 (36%), Gaps = 9/169 (5%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT 124
+ +G +G+GK++L Y + + N++ + Y D ++ +T
Sbjct: 17 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV------NLDTGVKELPYEPSID-VREFVT 69
Query: 125 IENVMS-LLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183
+E +M G + + +L + L+ L L + +D P +
Sbjct: 70 VEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFG 129
Query: 184 SIALELINNPRVMFLDEPTTGLD-SQSCSQCIKLLKMISQQGRTIICTI 231
+E + P V+++ +P + C L + + G T I +
Sbjct: 130 VRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPAL 178
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 33.5 bits (77), Expect = 0.088
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 64 LIAIMGPSGAGKSSLLDVLS 83
LI + GP KS++ LS
Sbjct: 3 LIILEGPDCCFKSTVAAKLS 22
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 33.5 bits (76), Expect = 0.10
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVLS 83
+ + +MG SG+GKS++ ++
Sbjct: 6 HDHHIYVLMGVSGSGKSAVASEVA 29
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 32.8 bits (76), Expect = 0.15
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 62 NQLIAIMGPSGAGKSSLLDVL 82
++ I I GPSG GKS+LL L
Sbjct: 1 SRPIVISGPSGTGKSTLLKKL 21
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 33.1 bits (76), Expect = 0.16
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 61 SNQLIAIMGPSGAGKSSLLD 80
+ I+G +G+GKSSLLD
Sbjct: 22 KEGINLIIGQNGSGKSSLLD 41
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural
genomics, joint center for structural genomics, protein
structure initiative; HET: MSE; 1.60A {Marinobacter
aquaeolei}
Length = 126
Score = 32.0 bits (73), Expect = 0.17
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 11/77 (14%)
Query: 481 VGYM------VGAVFNVVNGTFVGPVLVVPMMMFSGFGVSINDIPKYMRWGSELSYLRYG 534
+ YM + + N G V VVP+ + +G + D+P + +G
Sbjct: 40 IAYMELAEPSLDTIVNRAKGQGVEQFTVVPLFLAAGRHLR-KDVPAMIERLEA----EHG 94
Query: 535 LEGYVAAIYGLDRKTLQ 551
+ +A G + +
Sbjct: 95 VTIRLAEPIGKNPRLGL 111
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 32.4 bits (74), Expect = 0.19
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 61 SNQLIAIMGPSGAGKSSLLD 80
+ I+G +G+GKSSLLD
Sbjct: 22 KEGINLIIGQNGSGKSSLLD 41
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 33.7 bits (78), Expect = 0.19
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSLL-DVL 82
LKN+ + P +A+ G SG+GKS+L+ +VL
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
Score = 29.4 bits (67), Expect = 3.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 198 LDEPTTGLDSQSCSQCIKLLKMISQQGRTII 228
LDEPTTGL ++ + +L + G T++
Sbjct: 570 LDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 600
Score = 28.3 bits (64), Expect = 8.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 52 LKNLCGRFPSNQLIAIMGPSGAGKSSL 78
LKN+ P +L+ + G SG+GKSSL
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 33.6 bits (77), Expect = 0.24
Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 11/108 (10%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPL 122
+ I G +G GKS L R + + + G + + + D+ L
Sbjct: 148 GWVTIYGMAGCGKSVL--AAEAVRDHSLLEGCFSGGVH-----WVSIG----KQDKSGLL 196
Query: 123 LTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDE 170
+ ++N+ L +ES + R K RL + + + ++ LD+
Sbjct: 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDD 244
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.25
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 15/42 (35%)
Query: 261 QLVNYL-SSVNLPCPKYHNPADFVIELASGEYGVDNINAMVE 301
Q + L +S+ L PA LA I A +E
Sbjct: 20 QALKKLQASLKLYADD-SAPA-----LA--------IKATME 47
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 33.1 bits (75), Expect = 0.26
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 41 GLGFKQEPKDVLKNLCGRF--------PSNQLIAIMGPSGAGKSSLL 79
G+ F PKD K+ R + ++G GKSS++
Sbjct: 1 GMLFDTSPKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSII 47
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 32.2 bits (73), Expect = 0.28
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 64 LIAIMGPSGAGKSSLLDVLS 83
+I I GP G GK+ L
Sbjct: 7 IIWINGPFGVGKTHTAHTLH 26
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 32.4 bits (75), Expect = 0.29
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 65 IAIMGPSGAGKSSL 78
+ I GPS +GKSS+
Sbjct: 5 VTIDGPSASGKSSV 18
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 32.0 bits (72), Expect = 0.31
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 60 PSNQLIAIMGPSGAGKSSL 78
++ + G G+GKS++
Sbjct: 7 LGGNILLLSGHPGSGKSTI 25
>3r20_A Cytidylate kinase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, ADP,
DCMP, D transferase; 2.00A {Mycobacterium smegmatis}
PDB: 3r8c_A 4die_A*
Length = 233
Score = 32.4 bits (75), Expect = 0.31
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 65 IAIMGPSGAGKSSL 78
+A+ GP+G GKSS+
Sbjct: 12 VAVDGPAGTGKSSV 25
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 32.4 bits (75), Expect = 0.34
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 65 IAIMGPSGAGKSSL 78
IAI GP+ +GKS++
Sbjct: 19 IAIDGPASSGKSTV 32
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 32.1 bits (74), Expect = 0.36
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 63 QLIAIMGPSGAGKSSLLDVL 82
+ + + GPSGAGKS+LL L
Sbjct: 5 RPVVLSGPSGAGKSTLLKKL 24
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 31.8 bits (72), Expect = 0.36
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 62 NQLIAIMGPSGAGKSSL 78
+L I GP+G GKS+
Sbjct: 2 KKLYIITGPAGVGKSTT 18
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 32.0 bits (73), Expect = 0.36
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVL 82
+ VL+ L R P QL+A+ G G+GKS+L + L
Sbjct: 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPL 42
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4;
2.30A {Staphylococcus aureus}
Length = 219
Score = 32.0 bits (74), Expect = 0.36
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 65 IAIMGPSGAGKSSL 78
IA+ GP+ AGKS++
Sbjct: 6 IALDGPAAAGKSTI 19
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 32.0 bits (74), Expect = 0.42
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 65 IAIMGPSGAGKSSL 78
I I GPSGAGK +L
Sbjct: 8 ITIDGPSGAGKGTL 21
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 31.8 bits (72), Expect = 0.43
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 64 LIAIMGPSGAGKSSL 78
LI + G GK++L
Sbjct: 7 LIIVTGHPATGKTTL 21
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 31.8 bits (73), Expect = 0.43
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 63 QLIAIMGPSGAGKSSLLDVL 82
+++ + GPS GKS+++ L
Sbjct: 21 RVVVLSGPSAVGKSTVVRCL 40
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 31.8 bits (73), Expect = 0.43
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 63 QLIAIMGPSGAGKSSLLDVL 82
+ + ++G SG G+S + + L
Sbjct: 20 KTLVLIGASGVGRSHIKNAL 39
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 31.7 bits (73), Expect = 0.45
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 63 QLIAIMGPSGAGKSSLLDVL 82
LI + GPSG GK ++ + +
Sbjct: 9 LLIVLSGPSGVGKGTVREAV 28
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 31.3 bits (70), Expect = 0.48
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 61 SNQLIAIMGPSGAGKSSL 78
+ ++I + G S AGKS +
Sbjct: 2 TTRMIILNGGSSAGKSGI 19
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 31.7 bits (73), Expect = 0.50
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 63 QLIAIMGPSGAGKSSLLDVL 82
LI + GPSG GK ++ +
Sbjct: 7 LLIVLSGPSGVGKGTVRKRI 26
>3rlf_F Maltose transport system permease protein MALF; integral membrane
protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F*
3pv0_F* 3puw_F* 3fh6_F
Length = 514
Score = 32.2 bits (73), Expect = 0.51
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 239 FQMFDQVYLLSGG------QCLYQGATDQLVNYL 266
F F + LL+ G G TD LVNY
Sbjct: 438 FNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYT 471
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 31.8 bits (72), Expect = 0.52
Identities = 27/187 (14%), Positives = 59/187 (31%), Gaps = 32/187 (17%)
Query: 55 LCGRFPSNQLIAIMGPSGAGKSSLLD--VLSGYRSNGVTGQILTNGHSRNINAFRRVSCY 112
+ G FP + + G +G GK++ + G G G +T
Sbjct: 23 IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR---------- 72
Query: 113 IQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPT 172
+ M+ G D + + ++ + ++ P
Sbjct: 73 -----------DLRREMASFGWDFEKYEKEGKI-----AIVDGVSSVVGLPSEEKFVLED 116
Query: 173 TSNPNDQKKRLSIALELINNPRVMF--LDEPTTGLDSQSC--SQCIKLLKMISQQGRTII 228
N ++ + + ++ IN R++ + L+ + +KL ++ + G T I
Sbjct: 117 RFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTI 176
Query: 229 CTIHQPS 235
T P
Sbjct: 177 LTTEAPD 183
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 31.5 bits (72), Expect = 0.56
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 47 EPKDVLKNLCGRFPSNQ-----LIAIMGPSGAGKSSLLDVL 82
E +D + LC + + ++ I G S +GK++L + L
Sbjct: 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQL 42
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 31.6 bits (71), Expect = 0.56
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 60 PSNQLIAIMGPSGAGKSSL 78
+ + +MG SG+GK+++
Sbjct: 27 EPTRHVVVMGVSGSGKTTI 45
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 31.3 bits (72), Expect = 0.58
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 64 LIAIMGPSGAGKSSLLDVL 82
+ ++G G G+ + + L
Sbjct: 7 TLVLLGAHGVGRRHIKNTL 25
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 31.8 bits (72), Expect = 0.65
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 65 IAIMGPSGAGKSSLLDVLSG-YRSNG 89
+ + GP GAGKS+ ++ G
Sbjct: 77 VGLSGPPGAGKSTFIEYFGKMLTERG 102
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 31.2 bits (71), Expect = 0.83
Identities = 27/185 (14%), Positives = 54/185 (29%), Gaps = 30/185 (16%)
Query: 55 LCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQ 114
L G P ++ + G G GK+ Q L NG Y+
Sbjct: 16 LHGGIPERNVVLLSGGPGTGKTIFS--Q----------QFLWNGLKMG----EPG-IYVA 58
Query: 115 QDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
++ + M+ G D + + + + +
Sbjct: 59 LEEHPV---QVRQNMAQFGWDVKPYEEKGMFAMVD----AFTAGIGKSKEYEKYIVHDLT 111
Query: 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQ---CI-KLLKMISQQGRTIICT 230
+ + + L A+ I N + + +D T L + I +L ++++ G T I
Sbjct: 112 DIREFIEVLRQAIRDI-NAKRVVVD-SVTTLYINKPAMARSIILQLKRVLAGTGCTSIFV 169
Query: 231 IHQPS 235
Sbjct: 170 SQVSV 174
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 31.6 bits (72), Expect = 0.84
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 14/88 (15%)
Query: 59 FPSNQLIAIMGPSGAGKSSLLD----VLSGYRSNGVTGQILT----NGHSRNINAFRRVS 110
F + +I+GP+G+GKS+++D VL G RSN + IL G S
Sbjct: 23 FGESNFTSIIGPNGSGKSNMMDAISFVL-GVRSNHLRSNILKDLIYRGVLN-----DENS 76
Query: 111 CYIQQDDRLQPLLTIENVMSLLGLDESQ 138
+ V +
Sbjct: 77 DDYDNEGAASSNPQSAYVKAFYQKGNKL 104
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 30.6 bits (70), Expect = 0.91
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 63 QLIAIMGPSGAGKSSLLDVL 82
+ + GPSG GK +L+ +
Sbjct: 13 PPLVVCGPSGVGKGTLIKKV 32
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 30.6 bits (70), Expect = 0.92
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 65 IAIMGPSGAGKSSLLDVLSG 84
+ I G AGKSSLL+ L+G
Sbjct: 7 VVIAGRPNAGKSSLLNALAG 26
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 31.2 bits (70), Expect = 0.94
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 55 LCGRFPSNQLIAIMGPSGAGKSSLL 79
+ + + A++ P GAGKS L
Sbjct: 23 VLPNMVAGTVGALVSPGGAGKSMLA 47
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 31.1 bits (69), Expect = 1.1
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 15 SESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQL-IAIMGPSGA 73
SE L K + + S L +++ +D + + ++G
Sbjct: 22 SEMSVCLNKLAETINKAELAGDSSSGKLSLERDIED-ITIASKNLQQGVFRLLVLGDMKR 80
Query: 74 GKSSLLDVLSG 84
GKS+ L+ L G
Sbjct: 81 GKSTFLNALIG 91
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 30.5 bits (70), Expect = 1.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 63 QLIAIMGPSGAGKSSLLDVL 82
L I PSGAGK+SL+ L
Sbjct: 8 NLFIISAPSGAGKTSLVRAL 27
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 30.6 bits (70), Expect = 1.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 63 QLIAIMGPSGAGKSSLLDVLS 83
L + PSGAGKSSL+ L
Sbjct: 17 TLYIVSAPSGAGKSSLIQALL 37
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 30.6 bits (70), Expect = 1.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 63 QLIAIMGPSGAGKSSLLDVL 82
+ I GPSG GK +L+ L
Sbjct: 24 YPLVICGPSGVGKGTLIKKL 43
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 30.4 bits (69), Expect = 1.3
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 55 LCGRFPSNQLIAIMGPSGAGKSSLL 79
+ G P IA+ G G GK+
Sbjct: 16 IQGGIPQGFFIALTGEPGTGKTIFS 40
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 30.2 bits (69), Expect = 1.4
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 62 NQLIAIMGPSGAGKSSLLDVL 82
++ + PSG GK+++ + L
Sbjct: 27 GVILVLSSPSGCGKTTVANKL 47
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 30.4 bits (68), Expect = 1.4
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 65 IAIMGPSGAGKSSLLDVLS 83
+ I G G+GK++ L+
Sbjct: 23 VLIEGNIGSGKTTYLNHFE 41
>3s0x_A Peptidase A24B, FLAK domain protein; preflagellin peptidase, GXGD
protease, aspartyl protease, intramembrane proteolysis;
3.60A {Methanococcus maripaludis}
Length = 237
Score = 30.4 bits (68), Expect = 1.4
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 1/81 (1%)
Query: 447 FTTIVYPLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVGPVLVVPMM 506
F +Y G + L F + V N++NG ++
Sbjct: 100 FQMPIYTSLGTLLNLNYVPTFPIMVFINGIFFMVFLPFVILFRNILNGAR-PKTGKEFIL 158
Query: 507 MFSGFGVSINDIPKYMRWGSE 527
MF G + +N + R
Sbjct: 159 MFFGEKMKVNVAKEQKRLIMG 179
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 30.7 bits (69), Expect = 1.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 55 LCGRFPSNQLIAIMGPSGAGKSSLL 79
G F + +I G +G GK+ L+
Sbjct: 274 CGGGFFKDSIILATGATGTGKTLLV 298
Score = 30.3 bits (68), Expect = 2.4
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 55 LCGRFPSNQLIAIMGPSGAGKSSLL 79
G P + + G SG GK+
Sbjct: 32 SHGGLPIGRSTLVSGTSGTGKTLFS 56
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 30.0 bits (67), Expect = 1.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 65 IAIMGPSGAGKSSLLDVLS 83
IAI G GAGKS++ +S
Sbjct: 3 IAIFGTVGAGKSTISAEIS 21
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD,
nucleotidyltransferase, pyridine nucleotide biosynthesi
transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB:
3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A*
2qtm_A*
Length = 189
Score = 29.8 bits (68), Expect = 1.8
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 11/47 (23%)
Query: 23 TADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMG 69
+ E+ K +YT T + L ++P Q I+G
Sbjct: 71 SICLEELSRKGPSYTYDT-----------MLQLTKKYPDVQFHFIIG 106
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 30.3 bits (68), Expect = 1.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 64 LIAIMGPSGAGKSSL 78
L+ +MG +G GKS L
Sbjct: 42 LLVLMGATGTGKSRL 56
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 30.4 bits (69), Expect = 2.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 61 SNQLIAIMGPSGAGKSSL 78
S ++I I G +G GKS L
Sbjct: 1 SKKVIVIAGTTGVGKSQL 18
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 30.4 bits (68), Expect = 2.0
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 17/112 (15%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT 124
++++ GKS+L D L G I + R + +R +T
Sbjct: 22 MSVIAHVDHGKSTLTDSLVQR-----AGII----SAAKAGEARFTDTRKDEQER---GIT 69
Query: 125 IE-NVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNP-RVMFLDEPTTS 174
I+ +SL + + + S + LI++P V F E T +
Sbjct: 70 IKSTAISLYS---EMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAA 118
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 30.2 bits (69), Expect = 2.0
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 132 LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEP 171
L L + + LSGGQ++R++I L+ P V LDEP
Sbjct: 121 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman
fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB:
1kaq_A*
Length = 194
Score = 29.4 bits (67), Expect = 2.1
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 11/47 (23%)
Query: 23 TADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMG 69
+ +E++ + +YT T + L R+P++QL I+G
Sbjct: 76 KLELVEMEREGPSYTFDT-----------VSLLKQRYPNDQLFFIIG 111
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 29.3 bits (66), Expect = 2.3
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT 96
I GP +GK++ L + G G++++
Sbjct: 17 IVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVS 48
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 29.8 bits (68), Expect = 2.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 64 LIAIMGPSGAGKSSL 78
LI I+GP+ +GK+ L
Sbjct: 9 LIVIVGPTASGKTEL 23
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 29.8 bits (68), Expect = 2.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 64 LIAIMGPSGAGKSSL 78
I +MGP+ AGK+ L
Sbjct: 7 AIFLMGPTAAGKTDL 21
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 29.8 bits (67), Expect = 2.6
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 65 IAIMGPSGAGKSSLL 79
+ ++G G GKSS +
Sbjct: 39 VLVLGKGGVGKSSTV 53
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 29.6 bits (66), Expect = 2.6
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 64 LIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILT 96
+I++ G SGAG S++ +R GV +
Sbjct: 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIE 40
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 29.8 bits (68), Expect = 2.7
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 64 LIAIMGPSGAGKSSL 78
L+AI+GP+ GK+
Sbjct: 5 LVAIVGPTAVGKTKT 19
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 29.4 bits (67), Expect = 2.9
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 64 LIAIMGPSGAGKSSL 78
I +MGP+ +GK++L
Sbjct: 12 AIFLMGPTASGKTAL 26
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat,
nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB:
2h2a_A*
Length = 189
Score = 29.0 bits (66), Expect = 3.0
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 11/47 (23%)
Query: 23 TADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMG 69
EIK +YT T +K + ++L ++G
Sbjct: 71 DICDDEIKRGGQSYTYDT-----------IKAFKEQHKDSELYFVIG 106
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 29.4 bits (66), Expect = 3.0
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 64 LIAIMGPSGAGKSSLLDVLS 83
LI + G + +GKS++ + +
Sbjct: 27 LIGVSGGTASGKSTVCEKIM 46
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 29.1 bits (66), Expect = 3.3
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 64 LIAIMGPSGAGKSSLLDVLS 83
+I I G + +GK++L L+
Sbjct: 8 VIGIAGGTASGKTTLAQALA 27
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 28.9 bits (64), Expect = 3.4
Identities = 5/40 (12%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 64 LIAIMGPSGAGKSSLLD-VLSGYRSNGVTGQILTNGHSRN 102
+ ++G +GK++L++ ++ G + +
Sbjct: 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGG 45
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 29.6 bits (66), Expect = 3.5
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 43 GFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKS----SLLDVLSG 84
D LK + P + GP +GK+ +LL++ G
Sbjct: 150 KMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGG 195
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin
biosynthesis; HET: DST AMP; 2.10A {Agrobacterium
tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 29.0 bits (65), Expect = 3.5
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 64 LIAIMGPSGAGKSSL 78
L I GP+ +GK+ +
Sbjct: 3 LHLIYGPTCSGKTDM 17
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 29.1 bits (65), Expect = 3.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 65 IAIMGPSGAGKSSLL 79
I +MG G GKSS +
Sbjct: 42 ILVMGKGGVGKSSTV 56
>2eyu_A Twitching motility protein PILT; pilus retraction motor,
C-terminal domain PILT, protein transport; 1.87A
{Aquifex aeolicus}
Length = 261
Score = 29.1 bits (66), Expect = 3.8
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILT 96
D + LC R LI + GP+G+GKS+ + + Y + + I+T
Sbjct: 15 DKVLELCHR--KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 59
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 29.1 bits (66), Expect = 3.9
Identities = 5/32 (15%), Positives = 7/32 (21%), Gaps = 1/32 (3%)
Query: 486 GAVFNV-VNGTFVGPVLVVPMMMFSGFGVSIN 516
A V +PM+ G
Sbjct: 107 PAAVIVGSIAATQPGAAELPMVEAMLAGDEAR 138
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 28.9 bits (64), Expect = 3.9
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 65 IAIMGPSGAGKSSLLDVLS 83
++I G GKS+ + +L+
Sbjct: 5 LSIEGNIAVGKSTFVKLLT 23
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 29.2 bits (65), Expect = 3.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVL 82
P + +MG SG+GKSS+ ++
Sbjct: 1 PLGSKLLLMGRSGSGKSSMRSII 23
>3cnv_A Putative GNTR-family transcriptional regulator; structural
genomics, bordet bronchiseptica, PSI-2, protein
structure initiative; HET: MSE FLC; 2.00A {Bordetella
bronchiseptica RB50} SCOP: d.190.1.2
Length = 162
Score = 28.4 bits (64), Expect = 4.0
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 434 LLDIPVAGFCCLLFTTIVYPLTGQPMELTR 463
LL + G L I Y +PME+ R
Sbjct: 119 LLGVEP-GRPLLQVDRISYTYGDRPMEVRR 147
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB:
2obm_A*
Length = 347
Score = 29.2 bits (66), Expect = 4.0
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 56 CGRFPSNQLIAIMGPSGAGKSSLL 79
CG Q I I SG GKS+LL
Sbjct: 68 CGI---GQRIGIFAGSGVGKSTLL 88
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 29.0 bits (65), Expect = 4.0
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 64 LIAIMGPSGAGKSSLLDVLS 83
LI + G + +GKSS+ +
Sbjct: 24 LIGVSGGTASGKSSVCAKIV 43
>3ddv_A Transcriptional regulator (GNTR family); structure genomics, MCSG,
structural genomics, protein structure initiative; 2.65A
{Enterococcus faecalis} SCOP: d.190.1.2
Length = 145
Score = 28.4 bits (64), Expect = 4.0
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 434 LLDIPVAGFCCLLFTTIVYPLTGQPMELTR 463
L+I G L + Y G P E R
Sbjct: 103 YLEIKR-GDAILRVRQVSYFENGLPFEYVR 131
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 29.2 bits (66), Expect = 4.0
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 56 CGRFPSNQLIAIMGPSGAGKSSLL 79
GR Q + + SG GKS LL
Sbjct: 154 VGR---GQRMGLFAGSGVGKSVLL 174
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 28.7 bits (63), Expect = 4.3
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 64 LIAIMGPSGAGKSSLLDVL-SGYRSNGVTGQILTNGH 99
L+A SG GK++LL L + G+ ++ + H
Sbjct: 8 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 28.7 bits (63), Expect = 4.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 65 IAIMGPSGAGKSSLLDVLS 83
I+I G AGKS+ +++L
Sbjct: 27 ISIEGNIAAGKSTFVNILK 45
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 28.7 bits (64), Expect = 5.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 64 LIAIMGPSGAGKSSLLDVLS 83
+I I G + +GK++L L
Sbjct: 23 IIGISGVTNSGKTTLAKNLQ 42
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 29.1 bits (64), Expect = 5.3
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 10/65 (15%)
Query: 62 NQLIAIMGPSGAGKSSLLDVLS-------GYRSNGVTGQILTNGHSRNINAFRRV---SC 111
+ + G +GAGKS+ + + T + + SR+ + ++ C
Sbjct: 29 ELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKLKAGVC 88
Query: 112 YIQQD 116
Y +
Sbjct: 89 YAVLE 93
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged
helix-TUR UTRA, DNA-binding, transcription regulation;
1.80A {Mycobacterium smegmatis}
Length = 248
Score = 28.8 bits (65), Expect = 5.3
Identities = 6/30 (20%), Positives = 8/30 (26%), Gaps = 1/30 (3%)
Query: 434 LLDIPVAGFCCLLFTTIVYPLTGQPMELTR 463
LL L + Y +E R
Sbjct: 197 LLGADA-RTPMFLLNRVSYDQDDVAIEQRR 225
>3lhe_A GNTR family transcriptional regulator; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics; 1.62A {Bacillus anthracis} PDB:
3l5z_A*
Length = 143
Score = 28.0 bits (63), Expect = 5.5
Identities = 3/30 (10%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 434 LLDIPVAGFCCLLFTTIVYPLTGQPMELTR 463
+++ + + Y G+ E +
Sbjct: 106 FMNLTN-QDFLMRVEQVAYLTDGRTFEYSY 134
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG,
midwest center for structu genomics, PSI; 1.65A {Vibrio
parahaemolyticus}
Length = 177
Score = 28.3 bits (64), Expect = 5.5
Identities = 6/46 (13%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 24 ADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMG 69
+E +V+T +L+ + +P+ + ++G
Sbjct: 69 RSDLEQALYQPGQSVTT--------YALLEKIQEIYPTADITFVIG 106
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 28.7 bits (64), Expect = 5.6
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 30 KFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS 83
+ + + L + + ++VLK+L + I G GKS+LL L+
Sbjct: 135 RVASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALT 188
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 28.9 bits (64), Expect = 5.7
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 64 LIAIMGPSGAGKSSLLDVL 82
++ +MG GKSS+ V+
Sbjct: 1 MVLLMGVRRCGKSSICKVV 19
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding,
transcription regulation, transcriptional regulator,
GNTR/HUTC family; 2.40A {Bacillus subtilis}
Length = 243
Score = 28.4 bits (64), Expect = 6.0
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 434 LLDIPVAGFCCLLFTTIVYPLTGQPMELTRF 464
+L I G LL Y G E +
Sbjct: 197 ILGIQK-GAPVLLIKRTTYLQNGTAFEHAKS 226
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.0 bits (65), Expect = 6.1
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 67 IMGPSGAGKSSLLDVL 82
++G +G GK++ +
Sbjct: 928 LVGKAGCGKTATWKTV 943
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 28.2 bits (62), Expect = 6.1
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 65 IAIMGPSGAGKSSLLDVLS 83
I I G G GK+S+ ++++
Sbjct: 13 ILITGTPGTGKTSMAEMIA 31
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 28.6 bits (63), Expect = 6.5
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT 124
+ ++G SG GKS+L++ L + ++ + + H S + ++ +Q LLT
Sbjct: 11 LMVVGESGLGKSTLINSL--FLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 68
Query: 125 I 125
I
Sbjct: 69 I 69
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 28.0 bits (62), Expect = 7.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 65 IAIMGPSGAGKSSLLDVL 82
I +MG +GKSS+ V+
Sbjct: 23 ILLMGLRRSGKSSIQKVV 40
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 28.4 bits (64), Expect = 7.5
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 58 RFPSNQLIAIMGPSGAGKSSLLD 80
F + AI+GP+G+GKS+++D
Sbjct: 21 GFSDR-VTAIVGPNGSGKSNIID 42
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 27.7 bits (61), Expect = 7.9
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 65 IAIMGPSGAGKSSLLDVLS 83
I + G G GK++L L+
Sbjct: 14 ILLTGTPGVGKTTLGKELA 32
>1k0w_A L-ribulose 5 phosphate 4-epimerase; aldolase, isomerase; 2.10A
{Escherichia coli} SCOP: c.74.1.1 PDB: 1jdi_A
Length = 231
Score = 28.1 bits (63), Expect = 8.0
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 397 MTSMMLNILTFPMEMSILIKEHFNRWYSLKAYY 429
+ L M+ + L+ +H+ R + KAYY
Sbjct: 198 IFCRQLAPQLPDMQQT-LLNKHYLRKHGAKAYY 229
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 28.3 bits (64), Expect = 8.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 65 IAIMGPSGAGKSSLLDVLSGY 85
+ I+G GKS+LL+ L
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNE 266
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 28.5 bits (64), Expect = 8.3
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 269 VNLPCPKYHNPADFVIELA---SGEYGVDNINAMVEQAQNDVKPDKKTKKTKHCTY 321
V L + P + L G G+D++N ++ N P + +
Sbjct: 385 VALMVRELGGPGAVQV-LTPMRKGPLGMDHLNYHLQALFN---PGEGGVRIAEGEA 436
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 27.5 bits (62), Expect = 8.5
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 65 IAIMGPSGAGKSSLL 79
+ ++G G GKS+L
Sbjct: 6 LVVVGAGGVGKSALT 20
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 27.5 bits (62), Expect = 8.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 65 IAIMGPSGAGKSSLL 79
+AI+G GAGKS+L
Sbjct: 24 LAILGRRGAGKSALT 38
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 28.3 bits (64), Expect = 8.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 65 IAIMGPSGAGKSSLLDVLSGY 85
I G AGKS+LL+ L G
Sbjct: 236 TVIAGKPNAGKSTLLNTLLGQ 256
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 28.2 bits (64), Expect = 9.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 65 IAIMGPSGAGKSSLLDVLSGY 85
+AI+G GKSSLL+ S
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQS 247
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 27.6 bits (62), Expect = 9.4
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 65 IAIMGPSGAGKSSLL 79
+ ++G G GKS+L
Sbjct: 24 LVVVGAGGVGKSALT 38
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 27.4 bits (61), Expect = 9.4
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 64 LIAIMGPSGAGKSSL 78
+I +G G+GKS+
Sbjct: 4 IILTIGCPGSGKSTW 18
>2ikk_A Hypothetical transcriptional regulator YURK; APC85442, bacillus
subtilis subsp. subtilis STR. 168, structural genomics,
PSI-2; 1.80A {Bacillus subtilis} SCOP: d.190.1.2
Length = 173
Score = 27.3 bits (61), Expect = 9.6
Identities = 5/30 (16%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 434 LLDIPVAGFCCLLFTTIVYPLTGQPMELTR 463
LD + G + QP+ +
Sbjct: 128 YLDCDI-GDALFEIDKTAFTSNDQPIYCSL 156
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.0 bits (62), Expect = 9.7
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 61 SNQLIAIMGPSGAGKSSLL 79
+N I+ GAGKS
Sbjct: 34 TNSNWTILAKPGAGKSFTA 52
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 27.5 bits (62), Expect = 9.9
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 65 IAIMGPSGAGKSSLL 79
+ ++G G GKS+L
Sbjct: 21 LVVVGDGGVGKSALT 35
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 27.5 bits (62), Expect = 10.0
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 65 IAIMGPSGAGKSSLL 79
+ ++G G GKS+L
Sbjct: 12 LVVVGGGGVGKSALT 26
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 28.1 bits (63), Expect = 10.0
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 289 GEYGVDNINAMVEQAQNDVKPDKK 312
G +GV +N +EQ + +
Sbjct: 447 GPFGVAGLNERIEQFMQQKRKIHR 470
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.399
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,785,645
Number of extensions: 520525
Number of successful extensions: 1621
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1561
Number of HSP's successfully gapped: 301
Length of query: 606
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 507
Effective length of database: 3,937,614
Effective search space: 1996370298
Effective search space used: 1996370298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)