RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13765
(606 letters)
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 116 bits (291), Expect = 7e-30
Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 25/244 (10%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
I +++ + +LK++ + +A +G SG GKS+L++++ +
Sbjct: 16 RIDIDHVSFQ------YNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 69
Query: 88 NGVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQ 144
+GQIL +GH + R +QQD+ L EN++ LG + + +
Sbjct: 70 V-TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENIL--LGRPTATDEEVVE 126
Query: 145 LSGGQKKRLSIALELINNPRVMFLDEPTTSNPND----QKKRLSIALELINNPRVMFLDE 200
+ +++ A + I N D QK+RLSIA +NNP ++ LDE
Sbjct: 127 AA-----KMANAHDFIMN-LPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE 180
Query: 201 PTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
T+ LD +S S + L ++ + RT + H+ S D++ ++ G + G
Sbjct: 181 ATSALDLESESIIQEALDVL-SKDRTTLIVAHRLST--ITHADKIVVIENGHIVETGTHR 237
Query: 261 QLVN 264
+L+
Sbjct: 238 ELIA 241
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 115 bits (289), Expect = 1e-29
Identities = 50/242 (20%), Positives = 100/242 (41%), Gaps = 17/242 (7%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
++F+D+++ + VL+ L ++ A++GP+G+GKS++ +L Y+
Sbjct: 11 LVQFQDVSFAYPN-----RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 87 SNGVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSS 143
G Q+L +G R + Q+ ++ EN+ L + ++
Sbjct: 66 PTGG--QLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITA 123
Query: 144 QLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTT 203
K + + +DE + Q++ +++A LI P V+ LD+ T+
Sbjct: 124 AA---VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATS 180
Query: 204 GLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQL 262
LD+ S Q +LL ++ R+++ S + D + L GG G QL
Sbjct: 181 ALDANSQLQVEQLLYESPERYSRSVLLITQHLSL--VEQADHILFLEGGAIREGGTHQQL 238
Query: 263 VN 264
+
Sbjct: 239 ME 240
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 114 bits (286), Expect = 4e-29
Identities = 52/267 (19%), Positives = 105/267 (39%), Gaps = 70/267 (26%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
+++F+++T+T + L+N+ + P+ + +A++G SG+GKS++ +++ +
Sbjct: 13 DLEFRNVTFT------YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 66
Query: 88 NGVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLL------------ 132
G IL +GH + + R + Q+ L N+
Sbjct: 67 I-DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA 125
Query: 133 ---------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
GLD LSGGQ++R++IA R
Sbjct: 126 ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA-------RA------------ 166
Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT 237
L+ + ++ LDE T+ LD++S L + Q+ RT + H+ S
Sbjct: 167 -----------LLRDSPILILDEATSALDTESERAIQAALDEL-QKNRTSLVIAHRLSTI 214
Query: 238 LFQMFDQVYLLSGGQCLYQGATDQLVN 264
+ D++ ++ G + +G +L+
Sbjct: 215 --EQADEIVVVEDGIIVERGTHSELLA 239
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 112 bits (281), Expect = 2e-28
Identities = 51/265 (19%), Positives = 98/265 (36%), Gaps = 41/265 (15%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFR 107
VLKN+ +++AI G +G+GK+SLL ++ G ++ G I +G
Sbjct: 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE--GIIKHSG--------- 97
Query: 108 RVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRV-- 165
RVS + Q + P EN++ + DE + K + ++
Sbjct: 98 RVS-FCSQFSWIMPGTIKENIIFGVSYDEYRYKS-------VVKACQLQQDITKFAEQDN 149
Query: 166 MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGR 225
L E + Q+ R+S+A + + + LD P LD + Q + +
Sbjct: 150 TVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK 209
Query: 226 TIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNLPCPKYHNPADFVIE 285
T I + + D++ +L G + G +L + P +
Sbjct: 210 TRILVTSKMEH--LRKADKILILHQGSSYFYGTFSELQS-------LRPDF--------- 251
Query: 286 LASGEYGVDNINAMVEQAQNDVKPD 310
+S G D + E+ ++ + +
Sbjct: 252 -SSKLMGYDTFDQFTEERRSSILTE 275
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 109 bits (274), Expect = 1e-27
Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 25/243 (10%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRS 87
+ + + + + +L+++ N +IA GPSG GKS++ +L Y+
Sbjct: 2 LSARHVDFAYDDS-------EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP 54
Query: 88 NGVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQ 144
G+I +G + ++ +R ++ QD + EN+ L D +
Sbjct: 55 TA--GEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLW-- 110
Query: 145 LSGGQKKRLSIALELINNPRVMFLDEPTTSNPN---DQKKRLSIALELINNPRVMFLDEP 201
Q L+ A + N E Q++RL+IA + NP+++ LDE
Sbjct: 111 ----QVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA 166
Query: 202 TTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261
T LDS+S S K L + +GRT + H+ S D++Y + GQ G ++
Sbjct: 167 TASLDSESESMVQKALDSL-MKGRTTLVIAHRLST--IVDADKIYFIEKGQITGSGKHNE 223
Query: 262 LVN 264
LV
Sbjct: 224 LVA 226
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 108 bits (271), Expect = 2e-27
Identities = 53/256 (20%), Positives = 98/256 (38%), Gaps = 58/256 (22%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
++ +D+ + L L G + +++ ++GP+GAGKS+LL ++G S
Sbjct: 4 MQLQDVAEST------------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG 51
Query: 89 GVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLLTI-----------------ENV 128
G I G + + Y+ Q + +V
Sbjct: 52 --KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDV 109
Query: 129 MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALE 188
L LD+ ++QLSGG+ +R+ +A ++
Sbjct: 110 AGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPA------------------- 150
Query: 189 LINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLL 248
+++ LDEP LD S K+L + QQG I+ + H + TL + + +LL
Sbjct: 151 ----GQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTL-RHAHRAWLL 205
Query: 249 SGGQCLYQGATDQLVN 264
GG+ L G ++++
Sbjct: 206 KGGKMLASGRREEVLT 221
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 102 bits (256), Expect = 2e-25
Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 69/262 (26%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG--YR 86
IK K++T T G +E LKN+ + ++IMGPSG+GKS++L+++
Sbjct: 2 IKLKNVTKTYKMG----EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP 57
Query: 87 SNG---VTGQILTNGHSRNINAFRRVSC-YIQQDDRLQPLLTI-ENV------------- 128
+ G + + + RR ++ Q L PLLT ENV
Sbjct: 58 TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMS 117
Query: 129 -----------MSLLGL-DESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP 176
+ + L + N + +QLSGGQ+
Sbjct: 118 GEERRKRALECLKMAELEERFANHKPNQLSGGQQ-------------------------- 151
Query: 177 NDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPS 235
+R++IA L NNP ++ D+PT LDS++ + ++LLK ++++ G+T++ H +
Sbjct: 152 ----QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207
Query: 236 ATLFQMFDQVYLLSGGQCLYQG 257
+ + +++ L G+ +
Sbjct: 208 --VARFGERIIYLKDGEVEREE 227
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 103 bits (257), Expect = 2e-25
Identities = 39/227 (17%), Positives = 86/227 (37%), Gaps = 11/227 (4%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN----AF 106
L + + I+GP+G+GKS+L++V++G+ G++ +
Sbjct: 19 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITNKEPAELY 77
Query: 107 RRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSGGQKKRLSI---ALELINN 162
Q + +T+ EN++ S K + A +++
Sbjct: 78 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 137
Query: 163 PRV-MFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMIS 221
++ D Q K + I L+ NP+++ +DEP G+ + +
Sbjct: 138 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 197
Query: 222 QQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSS 268
+G T + H+ + D +Y++ GQ + +G ++ + + S
Sbjct: 198 AKGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLS 243
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 102 bits (256), Expect = 3e-25
Identities = 58/267 (21%), Positives = 110/267 (41%), Gaps = 71/267 (26%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YR 86
+I F+++ + +K + +L N+ ++I I+G SG+GKS+L ++ Y
Sbjct: 1 DITFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 54
Query: 87 SNGVTGQILTNGH---SRNINAFRRVSCYIQQDDRLQPLLTIENVMSLL----------- 132
Q+L +GH + N RR + QD+ L I+N+
Sbjct: 55 PENG--QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYA 112
Query: 133 ---------------GLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
G + + + LSGG
Sbjct: 113 AKLAGAHDFISELREGYNTIVGEQGAGLSGG----------------------------- 143
Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSAT 237
Q++R++IA L+NNP+++ DE T+ LD +S ++ + I +GRT+I H+ S
Sbjct: 144 -QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHRLSTV 201
Query: 238 LFQMFDQVYLLSGGQCLYQGATDQLVN 264
+ D++ ++ G+ + QG +L++
Sbjct: 202 --KNADRIIVMEKGKIVEQGKHKELLS 226
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 101 bits (252), Expect = 1e-24
Identities = 47/244 (19%), Positives = 99/244 (40%), Gaps = 28/244 (11%)
Query: 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR 86
+E+K ++LT + L + + ++GPSG GK++ L +++G
Sbjct: 5 VEVKLENLTKRFGN--------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 56
Query: 87 SNGVTGQILTNGHSRN-INAFRRVSCYIQQDDRLQPLLTI-ENV---MSLLGLDESQNTR 141
G+I + R + Q + P +T+ EN+ + + + +
Sbjct: 57 EP-TEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE--- 112
Query: 142 SSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEP 201
KR+ A EL+ L+ Q++R+++A ++ P V+ +DEP
Sbjct: 113 -------IDKRVRWAAELLQIEE--LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEP 163
Query: 202 TTGLDSQSCSQCIKLLKMI-SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATD 260
+ LD++ +K + + T I H + M D++ +++ GQ L G+
Sbjct: 164 LSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAM-TMGDRIAVMNRGQLLQIGSPT 222
Query: 261 QLVN 264
++
Sbjct: 223 EVYL 226
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 100 bits (250), Expect = 2e-24
Identities = 41/218 (18%), Positives = 94/218 (43%), Gaps = 14/218 (6%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG----YRSNGVTGQILTNGHSRNINAF 106
+K + + P Q++ ++G +GAGK++ L ++G + + ++
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 107 RRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM 166
++ + L EN+M + + G K+ L L +
Sbjct: 81 MGIALVPEGRRIFPELTVYENLMMGA--------YNRKDKEGIKRDLEWIFSLFPRLKE- 131
Query: 167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRT 226
L + + +++ L+I L++ P+++ +DEP+ GL S+ ++++ I+Q+G T
Sbjct: 132 RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTT 191
Query: 227 IICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
I+ L ++ Y+L GQ + +G +L++
Sbjct: 192 ILLVEQNALGAL-KVAHYGYVLETGQIVLEGKASELLD 228
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 99.7 bits (248), Expect = 3e-24
Identities = 49/225 (21%), Positives = 103/225 (45%), Gaps = 12/225 (5%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILTNGHSRNINAFR 107
K++LK + ++ ++GP+GAGK++ L ++S + + + + R
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 74
Query: 108 RVSCYIQQDDRLQPLLT-IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVM 166
++ Y+ ++ + IE + + G S ++ ++ + A E+
Sbjct: 75 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSE-------IEEMVERATEIAGLGE-- 125
Query: 167 FLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRT 226
+ + ++ ++L IA L+ NPR+ LDEPT+GLD + + K+LK SQ+G T
Sbjct: 126 KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 185
Query: 227 IICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYLSSVNL 271
I+ + H + D++ L+ G + G ++L + N+
Sbjct: 186 ILVSSHNMLEVE-FLCDRIALIHNGTIVETGTVEELKERYKAQNI 229
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 99.2 bits (247), Expect = 4e-24
Identities = 67/264 (25%), Positives = 111/264 (42%), Gaps = 63/264 (23%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYR-- 86
IK ++T G Q L N+ P+ Q+ ++G SGAGKS+L+ ++
Sbjct: 2 IKLSNITKVFHQGTRTIQ----ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 57
Query: 87 SNG---VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-ENV-------------- 128
+ G V GQ LT + RR I Q L T+ NV
Sbjct: 58 TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 117
Query: 129 -------MSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181
+SL+GL + ++ S LSGGQK+R++IA L +NP+V+
Sbjct: 118 KRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLC------------- 164
Query: 182 RLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQ-GRTIICTIHQPSATLFQ 240
DE T+ LD + ++LLK I+++ G TI+ H+ + +
Sbjct: 165 -----------------DEATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKR 206
Query: 241 MFDQVYLLSGGQCLYQGATDQLVN 264
+ D V ++S G+ + Q ++ +
Sbjct: 207 ICDCVAVISNGELIEQDTVSEVFS 230
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 98.8 bits (246), Expect = 9e-24
Identities = 49/280 (17%), Positives = 104/280 (37%), Gaps = 46/280 (16%)
Query: 28 EIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRS 87
++ DL +VLK + + + +I+I+G SG+GKS+ L ++
Sbjct: 2 KLHVIDLHKRYGG--------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK 53
Query: 88 NGVTGQILTNGHS----------------RNINAFRRVSCYIQQDDRLQPLLTIENVMSL 131
G I+ NG + + R + Q L +T+ +
Sbjct: 54 P-SEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME 112
Query: 132 LGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELIN 191
+ ++ ++R L + + Q++R+SIA L
Sbjct: 113 APIQVLGLSKHDA-----RERALKYLAKVGIDE-RAQGKYPVHLSGGQQQRVSIARALAM 166
Query: 192 NPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGG 251
P V+ DEPT+ LD + + +++++ ++++G+T++ H+ + V L G
Sbjct: 167 EPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQG 225
Query: 252 QCLYQGATDQLVNYLSSVNLPCPKYHNPAD-FVIELASGE 290
+ +G +Q+ + NP + + G
Sbjct: 226 KIEEEGDPEQV-------------FGNPQSPRLQQFLKGS 252
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 88.1 bits (218), Expect = 1e-20
Identities = 38/205 (18%), Positives = 84/205 (40%), Gaps = 23/205 (11%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
++ +DL+ K VL+ + ++ GP+G GK++LL +S Y
Sbjct: 3 LEIRDLS---------VGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP 53
Query: 89 GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGG 148
+ G+I+ NG I + ++ ++ + +++E+ + +
Sbjct: 54 -LKGEIIYNG--VPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN------- 103
Query: 149 QKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQ 208
K + ALE + V+ L + +R+ +A L+ N + LD+P +D
Sbjct: 104 -KNEIMDALESVE---VLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 159
Query: 209 SCSQCIKLLKMISQQGRTIICTIHQ 233
S + +K + I ++ +I + +
Sbjct: 160 SKHKVLKSILEILKEKGIVIISSRE 184
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 85.8 bits (212), Expect = 1e-19
Identities = 54/255 (21%), Positives = 101/255 (39%), Gaps = 33/255 (12%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
++ +++T + + V K++ + + +GPSG GKS+LL +++G +
Sbjct: 1 VQLQNVTKA------WGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI 52
Query: 89 GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLL-TIENVMSLLGLDESQNTRSSQLSG 147
+ + R + Q L P L EN+ GL + +
Sbjct: 53 TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMS--FGLKLAGAKKEVI--- 107
Query: 148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207
+R++ E++ LD + Q++R++I L+ P V LDEP + LD+
Sbjct: 108 --NQRVNQVAEVLQLAH--LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 163
Query: 208 QSCSQCIKLL-KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVNYL 266
Q + ++ + GRT+I H + D++ +L G+ G +L
Sbjct: 164 ALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLEL---- 218
Query: 267 SSVNLPCPKYHNPAD 281
YH PAD
Sbjct: 219 ---------YHYPAD 224
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 85.5 bits (211), Expect = 2e-19
Identities = 42/238 (17%), Positives = 106/238 (44%), Gaps = 24/238 (10%)
Query: 29 IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSN 88
I+ + L+ ++ L NL + S + I+GP+GAGK+ L++++G+
Sbjct: 2 IEIESLS---------RKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP 52
Query: 89 GVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNTRSSQLSG 147
+L +++ + ++ Q+ L P + + +N+ + + + ++
Sbjct: 53 DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD-------- 104
Query: 148 GQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDS 207
KR+ + LD + +++R+++A L+ NP+++ LDEP + LD
Sbjct: 105 --PKRVLDTARDLK--IEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160
Query: 208 QSCSQCIKLL-KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQLVN 264
++ ++L + + T++ H + M D++ ++ G+ + G +++
Sbjct: 161 RTQENAREMLSVLHKKNKLTVLHITHDQTEAR-IMADRIAVVMDGKLIQVGKPEEIFE 217
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 83.8 bits (207), Expect = 7e-19
Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 73/260 (28%)
Query: 51 VLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-----YRSNGVTGQILTNGHSR-NIN 104
++ + + + ++GPSG GK++ L +++G + +++ + +
Sbjct: 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP 77
Query: 105 AFRRVSCYIQQDDRLQPLLT----------------------IENVMSLLGLDESQNTRS 142
R + Q L P +T + V LLGL E N +
Sbjct: 78 PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP 137
Query: 143 SQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPT 202
+LSGGQ++R+++ R ++ P+V +DEP
Sbjct: 138 RELSGGQRQRVALG-------RA-----------------------IVRKPQVFLMDEPL 167
Query: 203 TGLDSQSCSQCIKLLKMI-SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGATDQ 261
+ LD++ + LK + Q G T I H M D++ +++ G G+ D+
Sbjct: 168 SNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDE 226
Query: 262 LVNYLSSVNLPCPKYHNPAD 281
+ Y PA+
Sbjct: 227 V-------------YDKPAN 233
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 83.6 bits (206), Expect = 9e-19
Identities = 61/268 (22%), Positives = 115/268 (42%), Gaps = 37/268 (13%)
Query: 27 IEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG-- 84
+ I K+++ FK+ L N+ + + I+GPSGAGK++ + +++G
Sbjct: 2 VRIIVKNVSKV------FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD 55
Query: 85 YRSNG---VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTI-ENVMSLLGLDESQNT 140
S G +++ + + R + Q L P LT EN+ L +
Sbjct: 56 VPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE 115
Query: 141 RSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDE 200
+KR+ ++++ V+ S Q++R+++A L+ +P ++ LDE
Sbjct: 116 E-------IRKRVEEVAKILDIHHVLNHFPRELS--GAQQQRVALARALVKDPSLLLLDE 166
Query: 201 PTTGLDSQSCSQCIKLLKMI-SQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259
P + LD++ L+K + S+ G T++ H P A +F + D+V +L G+ + G
Sbjct: 167 PFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKP 225
Query: 260 DQLVNYLSSVNLPCPKYHNPAD-FVIEL 286
+ L Y NP V L
Sbjct: 226 EDL-------------YDNPVSIQVASL 240
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 80.1 bits (197), Expect = 2e-17
Identities = 46/218 (21%), Positives = 95/218 (43%), Gaps = 24/218 (11%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHS-RNINAFRRVSCYIQQDDRLQPLL 123
++GP+GAGKS L++++G G++ NG + RR ++ QD L P L
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKP-DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 124 TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINN-PRVMFLDEPTTSNPNDQKKR 182
++ +N + + +R E+ LD +++R
Sbjct: 86 SVY-----------RNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQR 134
Query: 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMI-SQQGRTIICTIHQPSATLFQM 241
+++A L+ PR++ LDEP + +D ++ ++ L+ + + I+ H +
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA-ML 193
Query: 242 FDQVYLLSGGQCLYQGATDQLVN--------YLSSVNL 271
D+V ++ G+ + +G +L + +LS+ NL
Sbjct: 194 ADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARNL 231
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 58.8 bits (141), Expect = 1e-10
Identities = 19/188 (10%), Positives = 43/188 (22%), Gaps = 34/188 (18%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT 124
I I G G GK++L+ + T R I + + + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKR-AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 125 IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLS 184
L N + + + + +V+ +DE
Sbjct: 62 KFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFS------ 115
Query: 185 IALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQ 244
+ +++ ++ TI + +
Sbjct: 116 -------------------------KKFRDLVRQIMHDPNVNVVATIPIRDV--HPLVKE 148
Query: 245 VYLLSGGQ 252
+ L G
Sbjct: 149 IRRLPGAV 156
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 57.2 bits (136), Expect = 2e-09
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 179 QKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATL 238
RL+++L L ++ LDEPT LD + + I +++ ++ +I H L
Sbjct: 289 LAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--L 346
Query: 239 FQMFDQVYLLS 249
D V +S
Sbjct: 347 KDAADHVIRIS 357
Score = 32.5 bits (72), Expect = 0.15
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLS 83
+ I+G +G+GKSSLLD +
Sbjct: 22 KEGINLIIGQNGSGKSSLLDAIL 44
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 53.6 bits (127), Expect = 2e-08
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 184 SIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFD 243
+++L L ++ LDEPT LD + + I +++ ++ +I H L D
Sbjct: 217 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAAD 274
Query: 244 QVYLLS 249
V +S
Sbjct: 275 HVIRIS 280
Score = 34.0 bits (76), Expect = 0.041
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSG 84
+ I+G +G+GKSSLLD +
Sbjct: 22 KEGINLIIGQNGSGKSSLLDAILV 45
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 43.1 bits (100), Expect = 4e-05
Identities = 25/175 (14%), Positives = 52/175 (29%), Gaps = 21/175 (12%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN-------GHSRNINAFRRVSCYIQQDD 117
+ +G +G+GK++L Y + + + +I+ V+ +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 118 RLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPN 177
P I L + L+ L L + +D P
Sbjct: 63 GYGPNGAIVESYDR-------------LMEKFNEYLNKILRLEKENDYVLIDTPGQMETF 109
Query: 178 DQKKRLSIALELINNPRVMFLDEPTTGLDSQS-CSQCIKLLKMISQQGRTIICTI 231
+ +E + P V+++ +P C L + + G T I +
Sbjct: 110 LFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPAL 164
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 42.8 bits (99), Expect = 9e-05
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Query: 183 LSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMF 242
L A+ LDE LD + + ++ I + + +F+
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKS 402
Query: 243 DQVY 246
D +
Sbjct: 403 DALV 406
Score = 35.5 bits (80), Expect = 0.015
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 59 FPSNQLIAIMGPSGAGKSSLLDVLS---GYRSNGVTGQILTN 97
F + +I+GP+G+GKS+++D +S G RSN + IL +
Sbjct: 22 FGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILKD 63
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 40.9 bits (94), Expect = 1e-04
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCY 112
K+ CG IAI+G GKS+LL+ L G + + + + T H
Sbjct: 2 KSYCGF------IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQA 55
Query: 113 IQQDD 117
I D
Sbjct: 56 IYVDT 60
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 38.8 bits (89), Expect = 9e-04
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 12/138 (8%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLT 124
I I GP +GK+SLL +L+ + + + + L
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65
Query: 125 ------IENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFL------DEPT 172
+ +D + + + + + E + L + T
Sbjct: 66 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 125
Query: 173 TSNPNDQKKRLSIALELI 190
P+ K L ++ +
Sbjct: 126 ARPPSKIKDALESEIQKV 143
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 38.5 bits (88), Expect = 0.001
Identities = 22/130 (16%), Positives = 38/130 (29%), Gaps = 4/130 (3%)
Query: 44 FKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNI 103
F P L + + + A++ P GAGKS L L+ + G + + +
Sbjct: 12 FAAAPPP-LDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPV 70
Query: 104 NAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDE---SQNTRSSQLSGGQKKRLSIALELI 160
RL L + + + Q S + +
Sbjct: 71 IYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAA 130
Query: 161 NNPRVMFLDE 170
R+M LD
Sbjct: 131 EGRRLMVLDT 140
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 38.1 bits (87), Expect = 0.002
Identities = 38/240 (15%), Positives = 72/240 (30%), Gaps = 25/240 (10%)
Query: 20 SLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
+ AD K + +STG K + K L G + + + G G+GK+ L
Sbjct: 1 TFMRADEYLKKRATIG-RISTGS------KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 53
Query: 80 DVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQN 139
+ +I ++ +P I + GLD +
Sbjct: 54 -----------HTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEV 101
Query: 140 TRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLD 199
+ + + + L+ + T P +L I L ++ R ++
Sbjct: 102 --LKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPV----KLLIVDSLTSHFRSEYIG 155
Query: 200 EPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259
Q ++ + L ++ + +Q A F GG L AT
Sbjct: 156 RGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSAT 215
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 37.0 bits (84), Expect = 0.002
Identities = 9/53 (16%), Positives = 16/53 (30%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDD 117
+ I+G GKS+L + L + V + + D
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDT 55
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 37.8 bits (86), Expect = 0.003
Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 11/130 (8%)
Query: 44 FKQEPKDVLKNLCGRF--------PSNQLIAIMGPSGAGKSSLLDVLS---GYRSNGVTG 92
F PKD K+ R + ++G GKSS++ + +
Sbjct: 3 FDTSPKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 62
Query: 93 QILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKR 152
+ + + F + ++ + ++ G+ N + +
Sbjct: 63 RKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLS 122
Query: 153 LSIALELINN 162
+ LE
Sbjct: 123 FANLLESFEQ 132
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 37.5 bits (86), Expect = 0.004
Identities = 27/187 (14%), Positives = 60/187 (32%), Gaps = 16/187 (8%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYR-----SNGVTGQILTNGHSRNINAFRRVSCYIQQDDRL 119
I ++G +GKSS+L+ + G S VT + L + A +
Sbjct: 27 IVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLH 86
Query: 120 QPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSI---------ALELINNPRVMFLDE 170
+P + + R + + G + L L++ P +
Sbjct: 87 KPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGI-TKVP 145
Query: 171 PTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICT 230
+ +++ + + I + + T + S ++L K + +G+ I
Sbjct: 146 VGDQPTDIEQQIRRMVMAYIKKQNAIIV-AVTPANTDLANSDALQLAKEVDPEGKRTIGV 204
Query: 231 IHQPSAT 237
I +
Sbjct: 205 ITKLDLM 211
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 36.3 bits (82), Expect = 0.004
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQD 116
+AI+G GKS+LL+ L G + ++ + T + D
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVD 59
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 36.2 bits (82), Expect = 0.004
Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 8/124 (6%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQ 120
+ + +MG SG+GKS++ ++ H R + DDR
Sbjct: 5 DHHIYVLMGVSGSGKSAVASEVA--HQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKP 62
Query: 121 PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQK 180
L + + + + S +K + E N ++L + + +
Sbjct: 63 WLQALNDAAFAMQRTNKVSLIVC--SALKKHYRDLLREGNPNLSFIYLK----GDFDVIE 116
Query: 181 KRLS 184
RL
Sbjct: 117 SRLK 120
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 36.3 bits (82), Expect = 0.006
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 59 FPSNQL--IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQ 114
+P L IA+ G S GKSS ++ L ++ T + N ++
Sbjct: 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVD 75
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 35.9 bits (81), Expect = 0.006
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN 102
+A G S AGKSS L+ L+ +S T + N
Sbjct: 19 VAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN 56
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 35.8 bits (81), Expect = 0.009
Identities = 29/222 (13%), Positives = 59/222 (26%), Gaps = 18/222 (8%)
Query: 38 VSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTN 97
+ST ++ L G S + G G+GK+ ++ N
Sbjct: 16 LSTSS------SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEE 69
Query: 98 GHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIAL 157
S+ A + YI + +P + T + + +
Sbjct: 70 AVSKGEVAQPKA-VYIDTEGTFRPERI---MQMAEHAGIDGQTVLDNTFVARAYNSDMQM 125
Query: 158 ELINNPRVMFLDEPTTSNPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLL 217
+ + +L + L + R + Q + + L
Sbjct: 126 LFAEKIEDLIQE--------GNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATL 177
Query: 218 KMISQQGRTIICTIHQPSATLFQMFDQVYLLSGGQCLYQGAT 259
++ ++ +Q SA F GG + AT
Sbjct: 178 NKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAAT 219
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 35.0 bits (79), Expect = 0.012
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 61 SNQLIAIMGPSGAGKSSL 78
+ ++I + G S AGKS +
Sbjct: 2 TTRMIILNGGSSAGKSGI 19
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 34.3 bits (77), Expect = 0.015
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVT 91
+ I G AGKSSLL+ L+G + VT
Sbjct: 4 VVIAGRPNAGKSSLLNALAGREAAIVT 30
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 34.8 bits (79), Expect = 0.015
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 63 QLIAIMGPSGAGKSSLLDVL 82
L + PSGAGKSSL+ L
Sbjct: 3 TLYIVSAPSGAGKSSLIQAL 22
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 34.7 bits (78), Expect = 0.015
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYR 86
I G S GKS+L+ L+G +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKK 24
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 34.6 bits (78), Expect = 0.018
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQD 116
+ +G +GK+ L L + I + +N R S +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDL 54
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 34.2 bits (77), Expect = 0.019
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQD 116
+ ++G AGKSSLL ++ T + + + D
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLAD 55
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 34.2 bits (77), Expect = 0.020
Identities = 28/182 (15%), Positives = 57/182 (31%), Gaps = 21/182 (11%)
Query: 62 NQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQP 121
+L I GP+G GKS+ L+ + I + + + R + L
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLA--AQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTW 59
Query: 122 LLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKK 181
+ ++ L + +++ + F+ T N + +
Sbjct: 60 KNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWT--NREELLR 117
Query: 182 RLS----------IALELINNPRVMFLDE----PTTGLDSQSCSQCIKLLKMISQQGRTI 227
R + LEL+ +DE T+ L + + +K + + R I
Sbjct: 118 RDALRKKDEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLNDIVK--NLKTNP-RFI 174
Query: 228 IC 229
C
Sbjct: 175 FC 176
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 34.2 bits (77), Expect = 0.020
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVT 91
+ I+G GKS+LL+ L VT
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNEDRAIVT 29
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 34.8 bits (79), Expect = 0.021
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 13/103 (12%)
Query: 43 GFKQEP---KDVLKNLCGRFPSNQL----IAIMGPSGAGKSSLLDVLSGYR------SNG 89
G + L L G + I +MG G GKSS ++ + G R
Sbjct: 6 GINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQS 65
Query: 90 VTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLL 132
+ + SR + + + + + S L
Sbjct: 66 EGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 108
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 34.1 bits (77), Expect = 0.022
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYR 86
+ ++G GKS+LL V+S +
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAK 25
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 34.2 bits (77), Expect = 0.025
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 64 LIAIMGPSGAGKSSLLDVL 82
+ + GPSGAGKS+LL L
Sbjct: 2 PVVLSGPSGAGKSTLLKKL 20
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 33.9 bits (76), Expect = 0.026
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 11/40 (27%)
Query: 45 KQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG 84
K E D +K +AI+G GKS+L + +
Sbjct: 2 KPEITDAIK-----------VAIVGRPNVGKSTLFNAILN 30
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 33.8 bits (76), Expect = 0.026
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 63 QLIAIMGPSGAGKSSLLDVL 82
+++ + GPS GKS+++ L
Sbjct: 3 RVVVLSGPSAVGKSTVVRCL 22
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 33.8 bits (76), Expect = 0.028
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 62 NQLIAIMGPSGAGKSSLLDVL 82
++ I I GPSG GKS+LL L
Sbjct: 1 SRPIVISGPSGTGKSTLLKKL 21
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 33.7 bits (76), Expect = 0.031
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 64 LIAIMGPSGAGKSSLLDVL 82
+ ++G G G+ + + L
Sbjct: 5 TLVLLGAHGVGRRHIKNTL 23
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 33.8 bits (76), Expect = 0.032
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLS 83
++ + G G+GKS++ + L+
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALA 25
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 33.5 bits (75), Expect = 0.036
Identities = 10/58 (17%), Positives = 21/58 (36%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPL 122
+ +G AGK++LL +L R + I + + + + + L
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRL 60
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 34.0 bits (77), Expect = 0.048
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 7 ELSNSLSSSESGTSLETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQL-I 65
++ S E + IE++ + G Q + + S+ L +
Sbjct: 9 GYFKKFNTGRKIISQEILNLIELRMRA---------GNIQLTNSAISDALKEIDSSVLNV 59
Query: 66 AIMGPSGAGKSSLLDVLSGYRSN 88
A+ G +G+GKSS ++ L G +
Sbjct: 60 AVTGETGSGKSSFINTLRGIGNE 82
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 33.7 bits (76), Expect = 0.051
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 39 STGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLS 83
S + +D++ + + + I G G GKS+ +D L
Sbjct: 28 SRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG 72
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 32.7 bits (73), Expect = 0.064
Identities = 9/57 (15%), Positives = 24/57 (42%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQP 121
+ ++G AGK+++L +G + ++ + N + F+ + L+
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS 61
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 32.8 bits (73), Expect = 0.084
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 49 KDVLKNLCGRFPSNQ-----LIAIMGPSGAGKSSLLDVLS 83
+D + LC + + ++ I G S +GK++L + LS
Sbjct: 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLS 43
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 32.8 bits (73), Expect = 0.092
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 38 VSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
++TG K++ K L G + + + G GK+ +
Sbjct: 5 ITTGS------KELDKLLQGGIETGSITEMFGEFRTGKTQIC 40
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 32.1 bits (72), Expect = 0.11
Identities = 5/40 (12%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 63 QLIAIMGPSGAGKSSLLD-VLSGYRSNGVTGQILTNGHSR 101
+ ++G +GK++L++ ++ G + +
Sbjct: 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 41
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 32.3 bits (72), Expect = 0.12
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 62 NQLIAIMGPSGAGKSSLLDVLSGY 85
N+++ + G G G ++ +
Sbjct: 1 NKVVVVTGVPGVGSTTSSQLAMDN 24
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b,
N-terminal (G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 32.3 bits (72), Expect = 0.12
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 62 NQLIAIMGPSGAGKSSLLDVLSGYR 86
+ +++++G GK++LLD + G
Sbjct: 5 SPIVSVLGHVDHGKTTLLDHIRGSA 29
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 32.4 bits (72), Expect = 0.13
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 23 TADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
TA ++ +L ++TG K++ L G + + + G GKS L
Sbjct: 2 TAADFHMRRSELI-CLTTGS------KNLDTLLGGGVETGSITELFGEFRTGKSQLC 51
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 31.6 bits (70), Expect = 0.14
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNIN 104
I I+G GAGK+++L L I N +
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYK 47
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 32.3 bits (72), Expect = 0.14
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLS 83
S AI+G +G+GKS++ D +
Sbjct: 25 SKGFTAIVGANGSGKSNIGDAIL 47
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 31.5 bits (70), Expect = 0.17
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 65 IAIMGPSGAGKSSLLD-VLSGYRSNGVTGQILTNGHSR 101
+A SG GK++LL ++ + G+ ++ + H
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 42
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 31.2 bits (69), Expect = 0.19
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRS 87
+ I G GK++L VL+ S
Sbjct: 8 LGIFGHIDHGKTTLSKVLTEIAS 30
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 31.9 bits (71), Expect = 0.20
Identities = 10/24 (41%), Positives = 20/24 (83%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVLS 83
S+++ AI+GP+G+GKS+++D +
Sbjct: 22 FSDRVTAIVGPNGSGKSNIIDAIK 45
Score = 29.2 bits (64), Expect = 1.3
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 190 INNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQPSATLFQMFDQVY 246
I LDE + LD + + +LLK S+ I H + + D ++
Sbjct: 239 IKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKH-TQFIVITHNKI--VMEAADLLH 292
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 31.1 bits (69), Expect = 0.24
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRV 109
+L+ L I ++G AGK++LL L+ + +T T G + +
Sbjct: 4 SILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITP---TQGFNIKSVQSQGF 60
Query: 110 SCYIQQDD 117
+
Sbjct: 61 KLNVWDIG 68
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia
coli [TaxId: 562]}
Length = 222
Score = 31.2 bits (69), Expect = 0.24
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLS 83
+ + G +GAGKS+ +
Sbjct: 23 DELVTTLSGGNGAGKSTTMAAFV 45
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 31.7 bits (71), Expect = 0.25
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 34 LTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVL 82
+T S + +L + + + + G GAGKS+ L+
Sbjct: 26 MTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAF 74
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 30.8 bits (68), Expect = 0.26
Identities = 4/20 (20%), Positives = 14/20 (70%)
Query: 65 IAIMGPSGAGKSSLLDVLSG 84
+ ++G +GK++ ++V++
Sbjct: 5 LTLVGLQYSGKTTFVNVIAS 24
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 31.2 bits (69), Expect = 0.26
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 22 ETADRIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
TA K K + + ++TG ++ K L G S + G GK+ L
Sbjct: 4 LTAFEYSEKRKMV-FHITTGS------QEFDKLLGGGIESMAITEAFGEFRTGKTQLS 54
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 31.4 bits (70), Expect = 0.29
Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 16/183 (8%)
Query: 65 IAIMGPSGAGKSSLLDVLSG----YRSNGVTGQ---ILTNGHSRNINA-FRRVSCYIQQD 116
IA++G AGKSS+L+ G R +G+ + +L +S A F D
Sbjct: 29 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTD 88
Query: 117 DRLQPLLTIENVMSLLGLDE--SQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTS 174
L + G ++ S + ++ L+ L++ P M
Sbjct: 89 FEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLT----LVDLP-GMTKVPVGDQ 143
Query: 175 NPNDQKKRLSIALELINNPRVMFLDEPTTGLDSQSCSQCIKLLKMISQQGRTIICTIHQP 234
P+ + + + ++ + + L D + S +K+ K + QG+ I I +
Sbjct: 144 PPDIEFQIRDMLMQFVTKENCLILAVSPANSDLAN-SDALKIAKEVDPQGQRTIGVITKL 202
Query: 235 SAT 237
Sbjct: 203 DLM 205
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 31.2 bits (69), Expect = 0.31
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 9/57 (15%)
Query: 25 DRIE--IKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
+RI + ++ + +G + + ++I + SG GKS+ +
Sbjct: 3 ERIREHLSSEESVGLLFSGC-------TGINDKTLGARGGEVIMVTSGSGMGKSTFV 52
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 31.1 bits (69), Expect = 0.32
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 65 IAIMGPSGAGKSSL 78
IAI GP+ +GKS++
Sbjct: 6 IAIDGPASSGKSTV 19
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 31.1 bits (70), Expect = 0.33
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 64 LIAIMGPSGAGKSSLLDVLSG-YRSNGVTGQILT 96
+I++ G SGAG S++ +R GV +
Sbjct: 6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIE 39
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.7 bits (68), Expect = 0.38
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 38 VSTGLGFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLL 79
VS+G+ + + G F + +I G +G GK+ L+
Sbjct: 8 VSSGV------VRLDEMCGGGFFKDSIILATGATGTGKTLLV 43
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 30.5 bits (67), Expect = 0.39
Identities = 8/51 (15%), Positives = 15/51 (29%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQ 115
+ ++G G GKS+L + G + S +
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYD 54
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 30.8 bits (68), Expect = 0.40
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 65 IAIMGPSGAGKSSL 78
I I GPSGAGK +L
Sbjct: 6 ITIDGPSGAGKGTL 19
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 30.4 bits (68), Expect = 0.51
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 46 QEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTG 92
E +L + ++AI+G GKS L++ L+G + G
Sbjct: 19 PEALKILSAITQPM---VVVAIVGLYRTGKSYLMNKLAGKKKGFSLG 62
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.4 bits (67), Expect = 0.53
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 55 LCGRFPSNQLIAIMGPSGAGKSSLL 79
G P + + G SG GK+
Sbjct: 19 SHGGLPIGRSTLVSGTSGTGKTLFS 43
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 30.0 bits (66), Expect = 0.59
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQI 94
I ++G GK++L L+G ++ + ++
Sbjct: 8 IGMVGHVDHGKTTLTKALTGVWTDTHSEEL 37
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 30.0 bits (66), Expect = 0.60
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 65 IAIMGPSGAGKSSLLDVLSGY 85
+AI+G +GKS L++ L+
Sbjct: 10 VAILGGESSGKSVLVNKLAAV 30
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 29.7 bits (65), Expect = 0.63
Identities = 9/58 (15%), Positives = 20/58 (34%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPL 122
+ +G AGK++LL +L R + I + + + + +
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRV 73
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 29.6 bits (65), Expect = 0.64
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVLS 83
P I I G G GK+S+ ++++
Sbjct: 3 PKGINILITGTPGTGKTSMAEMIA 26
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 30.4 bits (68), Expect = 0.66
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 60 PSNQLIAIMGPSGAGKSSLLDVLS 83
P+ + I GP G GK++ +L
Sbjct: 2 PTLLRVYIDGPHGMGKTTTTQLLV 25
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 29.5 bits (65), Expect = 0.70
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 60 PSNQLIAIMGPSGAGKSSL 78
P+ +++ +G GAGKS+
Sbjct: 12 PNPEVVVAVGFPGAGKSTF 30
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 29.5 bits (66), Expect = 0.77
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 65 IAIMGPSGAGKSSL 78
+ + G SG GKS
Sbjct: 18 VLLTGRSGIGKSEC 31
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 29.6 bits (65), Expect = 0.78
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 51 VLKNLCGRFPSNQL-IAIMGPSGAGKSSLLDVLSGYRSNGVT 91
+ + F + + I+G AGK+++L S +
Sbjct: 3 LFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS 44
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 29.5 bits (65), Expect = 0.83
Identities = 28/186 (15%), Positives = 62/186 (33%), Gaps = 17/186 (9%)
Query: 64 LIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQPLL 123
LI + G + +GKSS+ + Q+L ++ ++ + QD + L
Sbjct: 4 LIGVSGGTASGKSSVCAKIV---------QLLG---QNEVDYRQKQVVILSQDSFYRVLT 51
Query: 124 TIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKRL 183
+ + +L G + + K I V +
Sbjct: 52 SEQKAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPA 111
Query: 184 SIALE----LINNPRVMFLDEPTTGLDSQS-CSQCIKLLKMISQQGRTIICTIHQPSATL 238
+ L + V L + +D+ + ++L+ IS++GR + + Q +
Sbjct: 112 DVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFV 171
Query: 239 FQMFDQ 244
F++
Sbjct: 172 KPAFEE 177
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 29.1 bits (65), Expect = 0.83
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 65 IAIMGPSGAGKSSL 78
+ I G SG GKS
Sbjct: 18 VLITGDSGIGKSET 31
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 29.5 bits (66), Expect = 0.83
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 65 IAIMGPSGAGKSSL 78
+ I G SG GKS
Sbjct: 17 VLITGDSGVGKSET 30
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 29.3 bits (64), Expect = 0.85
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 62 NQLIAIMGPSGAGKSSL 78
++I +G G+GKS+
Sbjct: 2 KKIILTIGCPGSGKSTW 18
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 30.0 bits (67), Expect = 0.88
Identities = 23/154 (14%), Positives = 42/154 (27%), Gaps = 23/154 (14%)
Query: 43 GFKQEPKDVLKNLCGRFPSNQLIAIMGPSGAGKSSL---------LDVLSGYRSNGVTGQ 93
D LK + P + GP +GK++L L+
Sbjct: 135 KMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNF 194
Query: 94 ILTNGHSRNINAFRRVSCYIQQDDRLQPLLTIENVMSLLGLDESQNTRSSQLSGGQKKRL 153
L + + F V + L I N+ +L L G +
Sbjct: 195 ELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRD----------YLDGS----V 240
Query: 154 SIALELINNPRVMFLDEPTTSNPNDQKKRLSIAL 187
+ LE + + + P N+ ++
Sbjct: 241 KVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQA 274
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 29.5 bits (65), Expect = 0.91
Identities = 6/30 (20%), Positives = 18/30 (60%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVTGQI 94
I ++G GK++L+ ++G ++ + ++
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTSKHSEEL 40
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 29.2 bits (64), Expect = 0.92
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 65 IAIMGPSGAGKSSLLDVLSG 84
I ++G AGK+++L L
Sbjct: 3 ILMVGLDAAGKTTILYKLKL 22
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 29.8 bits (66), Expect = 0.98
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 53 KNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSG 84
K GR +N I+G GKS+ ++
Sbjct: 1 KVQWGRPGNNLKTGIVGMPNVGKSTFFRAITK 32
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 29.3 bits (65), Expect = 1.2
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 59 FPSNQL--IAIMGPSGAGKSSLLDVL 82
+ +L I I AGK++ + +
Sbjct: 1 YDLKRLRNIGIAAHIDAGKTTTTERI 26
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 29.3 bits (64), Expect = 1.2
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 64 LIAIMGPSGAGKSSLLDVLSGY 85
LIAI G GAGK +L++ LSG
Sbjct: 2 LIAIEGVDGAGKRTLVEKLSGA 23
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli
[TaxId: 562]}
Length = 210
Score = 29.1 bits (64), Expect = 1.3
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 57 GRFPSNQLIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILT 96
++ I I G GAGK++ +V+ G+ + T
Sbjct: 2 SKY-----IVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 37
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 28.8 bits (63), Expect = 1.4
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 53 KNLCGRFPSNQL-IAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVSC 111
K L F + ++ I ++G AGK+++L L +S + N + +
Sbjct: 2 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 61
Query: 112 YIQQDDRLQPL 122
+ D+++PL
Sbjct: 62 DVGGQDKIRPL 72
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 28.7 bits (63), Expect = 1.5
Identities = 8/67 (11%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGV--TGQILTNGHSRNINAFRRVSCYIQQDDRLQPL 122
+ I G +GK + +++ G +L + +R ++++ +
Sbjct: 6 VMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDE 65
Query: 123 LTIENVM 129
+ + V
Sbjct: 66 IVVNMVK 72
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 28.6 bits (64), Expect = 1.6
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 50 DVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRN 102
LK+ P + GP+ GKS + + G +++ +S +
Sbjct: 41 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHF----IQGAVISFVNSTS 89
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 28.8 bits (63), Expect = 1.6
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 64 LIAIMGPSGAGKSSLLDVLSGY-RSNGVTGQILTN-GHSRNINAFRRVSCYIQQD 116
LI + G AGKS+ L + G ++L S I + D
Sbjct: 5 LIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSD 59
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 28.4 bits (62), Expect = 1.7
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 64 LIAIMGPSGAGKSSLLDVLS 83
+ I G G+GK++ L+
Sbjct: 11 TVLIEGNIGSGKTTYLNHFE 30
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 28.7 bits (63), Expect = 1.9
Identities = 7/18 (38%), Positives = 15/18 (83%)
Query: 65 IAIMGPSGAGKSSLLDVL 82
+A++G +G+GK++L + L
Sbjct: 5 VALVGHAGSGKTTLTEAL 22
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2),
N-terminal (G) domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 341
Score = 28.9 bits (64), Expect = 1.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 65 IAIMGPSGAGKSSLLDVL 82
++++ GKS+L D L
Sbjct: 20 MSVIAHVDHGKSTLTDSL 37
>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor
eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 27.6 bits (61), Expect = 2.0
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 26 RIEIKFKDLTYTVSTGLGFKQEPKDVLKNLCGRFPSN 62
RI+ + T T G+ + K ++K +F N
Sbjct: 47 RIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN 83
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Length = 180
Score = 28.1 bits (62), Expect = 2.1
Identities = 19/166 (11%), Positives = 49/166 (29%), Gaps = 14/166 (8%)
Query: 347 KRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSV------------LINYNLLFSILIH 394
+R +T + +I + V + + +L + + L+ L+H
Sbjct: 1 ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMH 60
Query: 395 HVMTSMMLNILTFPMEMSILIKEHFNR--WYSLKAYYVSVNLLDIPVAGFCCLLFTTIVY 452
+ + L +E + + +L + YV G +++ + Y
Sbjct: 61 ILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGY 120
Query: 453 PLTGQPMELTRFTMFNCTSLLVVFIAQSVGYMVGAVFNVVNGTFVG 498
+ ++ I G+ ++ NG +
Sbjct: 121 VWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIA 166
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 28.3 bits (62), Expect = 2.2
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 64 LIAIMGPSGAGKSSLLDVLSGY-RSNGVT 91
LI I G GK++ ++L + N
Sbjct: 5 LILIEGLDRTGKTTQCNILYKKLQPNCKL 33
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 27.8 bits (60), Expect = 2.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 65 IAIMGPSGAGKSSLLDVLS 83
I ++GP GAGKS++ L+
Sbjct: 5 IFLVGPMGAGKSTIGRQLA 23
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 28.1 bits (61), Expect = 2.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 64 LIAIMGPSGAGKSSLLDVLSGY 85
I+I G AGKS+ +++L
Sbjct: 4 KISIEGNIAAGKSTFVNILKQL 25
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 27.6 bits (60), Expect = 2.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 65 IAIMGPSGAGKSSLLDVLS 83
I + G G GK++L L+
Sbjct: 7 ILLTGTPGVGKTTLGKELA 25
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 28.0 bits (62), Expect = 3.0
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 65 IAIMGPSGAGKSSLLDVLS 83
I + G G GKS+ V++
Sbjct: 9 IYLDGVYGIGKSTTGRVMA 27
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 27.6 bits (60), Expect = 3.0
Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 2/121 (1%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGV--TGQILTNGHSRNINAFRRVSCYIQQDDRLQPL 122
I ++G GAGK + + L S G +L R + + + ++ ++ P
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQ 70
Query: 123 LTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNPNDQKKR 182
++ D + + L G +++ A+ + + +R
Sbjct: 71 EITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLER 130
Query: 183 L 183
L
Sbjct: 131 L 131
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 27.9 bits (61), Expect = 3.0
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 49 KDVLKNLCGRFPSNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRR 108
+++LK++ G+ N I +G AGKS+L + TG + R + R
Sbjct: 13 QELLKDMYGKEHVN--IVFIGHVDAGKSTLGGNILFL-----TGMV----DKRTMEKIER 61
Query: 109 VS 110
+
Sbjct: 62 EA 63
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 27.4 bits (60), Expect = 3.1
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 63 QLIAIMGPSGAGKSS-LLDVLSGYRSNGVTGQILTNGHSR----NINAFRRVSCYIQQDD 117
Q+ I+GP +GKS+ L+ + ++ ++ + R +
Sbjct: 3 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPAC 62
Query: 118 RLQPLLTIENVMSLLGLDESQNT 140
L+ + ++++G+DE Q
Sbjct: 63 LLRDVAQEALGVAVIGIDEGQFF 85
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 27.5 bits (60), Expect = 3.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 65 IAIMGPSGAGKSSLLDVLSG 84
I I+G SG GKSSLL +
Sbjct: 10 ILIIGESGVGKSSLLLRFTD 29
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 27.7 bits (60), Expect = 3.2
Identities = 14/151 (9%), Positives = 33/151 (21%), Gaps = 3/151 (1%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGY--RSNGVTGQILTNGHSRNINAFRRVSCYIQQDDRLQ 120
+ + + GP G GK++L+ S S T + +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 121 PLLTIENVMSLLGLDESQNTRSSQLSGGQKKRLSIALELINNPRVMFLDEPTTSNP-NDQ 179
+ +E Q + + + P
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 180 KKRLSIALELINNPRVMFLDEPTTGLDSQSC 210
+ + + ++ P + L
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLA 152
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.0 bits (61), Expect = 3.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 62 NQLIAIMGPSGAGKSSLLDVL 82
+ + + G +G GKS LL L
Sbjct: 50 PRHLLVNGATGTGKSVLLREL 70
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 27.7 bits (60), Expect = 3.6
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 64 LIAIMGPSGAGKSSLLDVLSGY 85
+ + G G GKS++L +
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEI 24
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 27.2 bits (59), Expect = 3.8
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 62 NQLIAIMGPSGAGKSSLLDVLS 83
+ I ++G G G +++ L+
Sbjct: 2 TEPIFMVGARGCGMTTVGRELA 23
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.5 bits (60), Expect = 3.8
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 65 IAIMGPSGAGKSSLLDVL 82
I ++G +G GK+ L+
Sbjct: 8 IVLIGNAGVGKTCLVRRF 25
>d3bwga2 d.190.1.2 (A:89-233) Transcriptional regulator YydK
{Bacillus subtilis [TaxId: 1423]}
Length = 145
Score = 26.9 bits (59), Expect = 4.0
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 413 ILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTR 463
+ I + + L + AG L +I + GQP + ++
Sbjct: 80 LKIGFSDLFLHVGQLNEEEAEYLGLE-AGLPKLYIESIFHLTNGQPFDYSK 129
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.3 bits (59), Expect = 4.1
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 60 PSNQL-IAIMGPSGAGKSSLL 79
PS + ++G G GKS+L
Sbjct: 3 PSETHKLVVVGGGGVGKSALT 23
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 27.7 bits (61), Expect = 4.2
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 65 IAIMGPSGAGKSSLLDVLS 83
I + G G GK++ +
Sbjct: 8 IYLDGAYGIGKTTAAEEFL 26
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 27.1 bits (59), Expect = 4.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 65 IAIMGPSGAGKSSLLDVLSG 84
I I+G S GK+S L +
Sbjct: 8 ILIIGNSSVGKTSFLFRYAD 27
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 27.2 bits (59), Expect = 4.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 65 IAIMGPSGAGKSSLLDVLS 83
I +G G+GKS+L L+
Sbjct: 3 IVFIGFMGSGKSTLARALA 21
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 27.4 bits (59), Expect = 4.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 65 IAIMGPSGAGKSSLL 79
+ I+G SG GK+SL+
Sbjct: 5 VIILGDSGVGKTSLM 19
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 27.0 bits (58), Expect = 4.6
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 65 IAIMGPSGAGKSSLLDVLSG 84
+ ++G G GKS+L ++ +G
Sbjct: 6 VVLIGEQGVGKSTLANIFAG 25
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.0 bits (59), Expect = 4.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 65 IAIMGPSGAGKSSLLDVL 82
I ++G SG GKS LL
Sbjct: 5 ILLIGDSGVGKSCLLVRF 22
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 26.9 bits (58), Expect = 4.9
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 65 IAIMGPSGAGKSSLL 79
+ I+G GK+ LL
Sbjct: 5 LVIVGDGACGKTCLL 19
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 27.2 bits (59), Expect = 5.0
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVT 91
I I+G GAGK+++L L
Sbjct: 20 ILILGLDGAGKTTILYRLQIGEVVTTK 46
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 27.1 bits (59), Expect = 5.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 65 IAIMGPSGAGKSSLLDVLSG 84
+ ++G SG GKS+LL +
Sbjct: 7 VVLIGDSGVGKSNLLSRFTR 26
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 27.0 bits (58), Expect = 5.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 65 IAIMGPSGAGKSSLL 79
IAI+G GKSSL
Sbjct: 7 IAILGYRSVGKSSLT 21
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 27.3 bits (59), Expect = 5.2
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 63 QLIAIMGPSGAGKSSLLDVLSGY 85
+ ++I G GKS+ + +L+
Sbjct: 3 RRLSIEGNIAVGKSTFVKLLTKT 25
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 27.0 bits (59), Expect = 5.5
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 65 IAIMGPSGAGKSSLLDVL 82
+ ++G SG GK+ +L
Sbjct: 9 LLLIGDSGVGKTCVLFRF 26
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 27.0 bits (58), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 65 IAIMGPSGAGKSSLLDVLSG 84
+ I+G SG GK+SL+
Sbjct: 5 VIILGDSGVGKTSLMHRYVN 24
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 26.8 bits (58), Expect = 5.9
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 65 IAIMGPSGAGKSSLLDVLSG 84
++G +G GKS LL
Sbjct: 8 FLVIGNAGTGKSCLLHQFIE 27
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 26.8 bits (58), Expect = 6.0
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 65 IAIMGPSGAGKSSLL 79
+ ++G SG GK+ LL
Sbjct: 9 VMLVGDSGVGKTCLL 23
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 26.7 bits (58), Expect = 7.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 65 IAIMGPSGAGKSSLL 79
+ ++G SG GKS LL
Sbjct: 9 LLLIGNSGVGKSCLL 23
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 26.4 bits (57), Expect = 7.4
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 65 IAIMGPSGAGKSSLLDVLSGYRSNGVT 91
+ ++G +GKS+ + + +GV
Sbjct: 5 LLLLGTGESGKSTFIKQMRIIHGSGVP 31
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 26.4 bits (57), Expect = 7.7
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 65 IAIMGPSGAGKSSLL 79
+ +G SG GK++ L
Sbjct: 8 LLALGDSGVGKTTFL 22
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 26.6 bits (57), Expect = 7.7
Identities = 5/22 (22%), Positives = 9/22 (40%), Gaps = 3/22 (13%)
Query: 60 PSNQ---LIAIMGPSGAGKSSL 78
P I + G +GK ++
Sbjct: 1 PRATQGFTIFLTGYMNSGKDAI 22
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.5 bits (57), Expect = 7.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 65 IAIMGPSGAGKSSLL 79
+AI G +G GKS+L+
Sbjct: 5 LAIFGRAGVGKSALV 19
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 26.5 bits (57), Expect = 7.9
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 65 IAIMGPSGAGKSSLL 79
I ++G S GK++LL
Sbjct: 5 IVVVGDSQCGKTALL 19
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 141
Score = 26.2 bits (57), Expect = 7.9
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 7/86 (8%)
Query: 61 SNQLIAIMGPSGAGKSS-LLDVLSGYRSNGVTGQILTNGHSRN------INAFRRVSCYI 113
+ I+GP +GKS L+ + + Q+ ++ +
Sbjct: 6 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAV 65
Query: 114 QQDDRLQPLLTIENVMSLLGLDESQN 139
+ + L E ++ +DE Q
Sbjct: 66 AIKNSREILKYFEEDTEVIAIDEVQF 91
>d2ooia1 d.190.1.2 (A:73-233) Hypothetical protein SA0254
{Staphylococcus aureus [TaxId: 1280]}
Length = 161
Score = 26.1 bits (57), Expect = 8.0
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 407 FPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVAGFCCLLFTTIVYPLTGQPMELTR 463
M + I + K +LL + G CL + Y +TG+P + +
Sbjct: 91 LESNMKLRIGFSDIFFNVDKLTSSEASLLQLST-GEPCLRYHQTFYTMTGKPFDSSD 146
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 26.5 bits (57), Expect = 8.0
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 65 IAIMGPSGAGKSSLLDVLS 83
++G G+GKS++ L+
Sbjct: 4 AVLVGLPGSGKSTIGRRLA 22
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 26.2 bits (56), Expect = 8.5
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 65 IAIMGPSGAGKSSLL 79
+ ++G GKSS++
Sbjct: 5 MVVVGNGAVGKSSMI 19
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 26.1 bits (56), Expect = 8.7
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 65 IAIMGPSGAGKSSLL 79
+ ++G + +GKSSL+
Sbjct: 8 LGVLGDARSGKSSLI 22
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 26.1 bits (56), Expect = 8.8
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 65 IAIMGPSGAGKSSLL 79
I ++G S GK+ L
Sbjct: 5 IIVIGDSNVGKTCLT 19
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 26.1 bits (56), Expect = 8.8
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 65 IAIMGPSGAGKSSLL 79
+ ++G G GKS+L
Sbjct: 6 LVVVGAGGVGKSALT 20
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 26.1 bits (56), Expect = 8.8
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 65 IAIMGPSGAGKSSLL 79
+ ++G G GKS+L
Sbjct: 7 VIMVGSGGVGKSALT 21
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 26.6 bits (58), Expect = 8.9
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 61 SNQLIAIMGPSGAGKSSLLDVLSGYRSNGVTGQILTNGHSRNINAFRRVS 110
++ + G SG GKSSLL+ ++ ++ + S + R +
Sbjct: 94 KGKISTMAGLSGVGKSSLLNAINPGL------KLRVSEVSEKLQRGRHTT 137
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.2 bits (56), Expect = 9.0
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 65 IAIMGPSGAGKSSLL 79
+ ++G G GKS+L
Sbjct: 8 LVVVGGGGVGKSALT 22
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 26.1 bits (56), Expect = 9.1
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 65 IAIMGPSGAGKSSLL 79
++G GK+ LL
Sbjct: 8 CVVVGDGAVGKTCLL 22
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 26.2 bits (56), Expect = 9.4
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 65 IAIMGPSGAGKSSLL 79
+ ++G + GKSS++
Sbjct: 6 LVLLGEAAVGKSSIV 20
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 26.1 bits (56), Expect = 9.7
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 65 IAIMGPSGAGKSSLL 79
+ +G GK+SL+
Sbjct: 3 LVFLGEQSVGKTSLI 17
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.0 bits (56), Expect = 9.8
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 65 IAIMGPSGAGKSSLL 79
+ ++G G GKS+L
Sbjct: 6 VVVLGSGGVGKSALT 20
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.399
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,130,146
Number of extensions: 96968
Number of successful extensions: 520
Number of sequences better than 10.0: 1
Number of HSP's gapped: 469
Number of HSP's successfully gapped: 198
Length of query: 606
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 515
Effective length of database: 1,158,166
Effective search space: 596455490
Effective search space used: 596455490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.1 bits)