Query psy13766
Match_columns 165
No_of_seqs 117 out of 1743
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 19:56:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13766.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13766hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 1.8E-23 4E-28 140.1 14.4 130 28-164 8-138 (160)
2 KOG0027|consensus 99.9 2.1E-20 4.5E-25 126.7 14.4 117 44-160 7-127 (151)
3 KOG0030|consensus 99.8 9.5E-20 2.1E-24 117.4 12.6 117 44-160 10-130 (152)
4 KOG0031|consensus 99.8 6.5E-19 1.4E-23 115.4 13.1 122 32-162 24-145 (171)
5 KOG0028|consensus 99.8 4.6E-18 1E-22 112.1 12.1 113 44-158 32-146 (172)
6 PTZ00183 centrin; Provisional 99.8 5E-17 1.1E-21 110.6 14.7 121 34-161 11-133 (158)
7 PTZ00184 calmodulin; Provision 99.7 1.8E-16 3.9E-21 106.6 14.1 115 44-160 10-126 (149)
8 KOG0037|consensus 99.7 7.3E-17 1.6E-21 111.8 11.9 117 8-143 97-217 (221)
9 PTZ00183 centrin; Provisional 99.7 1.8E-14 4E-19 97.9 15.3 133 7-146 19-154 (158)
10 KOG0044|consensus 99.6 8.6E-15 1.9E-19 101.6 12.6 141 3-146 25-175 (193)
11 PTZ00184 calmodulin; Provision 99.6 6E-14 1.3E-18 94.3 14.5 131 8-145 14-147 (149)
12 COG5126 FRQ1 Ca2+-binding prot 99.6 1.4E-13 3E-18 92.6 14.6 134 4-146 20-156 (160)
13 KOG0027|consensus 99.6 1.3E-13 2.8E-18 93.4 13.9 134 6-146 9-149 (151)
14 KOG0037|consensus 99.5 1.6E-13 3.4E-18 95.4 11.9 106 45-159 57-165 (221)
15 PLN02964 phosphatidylserine de 99.5 2E-13 4.3E-18 109.9 12.6 114 21-146 120-243 (644)
16 KOG0034|consensus 99.5 8E-13 1.7E-17 91.7 11.6 115 34-159 27-148 (187)
17 KOG0036|consensus 99.5 1.4E-12 3E-17 98.2 13.3 108 44-159 13-123 (463)
18 KOG0028|consensus 99.4 1E-11 2.3E-16 82.3 13.9 128 11-146 39-170 (172)
19 KOG0034|consensus 99.3 1E-10 2.2E-15 81.2 13.4 126 14-147 42-176 (187)
20 cd05022 S-100A13 S-100A13: S-1 99.2 4.3E-11 9.4E-16 73.5 7.2 66 43-108 6-76 (89)
21 KOG0751|consensus 99.2 1E-10 2.2E-15 90.1 10.7 143 5-163 74-224 (694)
22 KOG0044|consensus 99.2 1.8E-10 3.9E-15 80.2 11.0 112 26-147 15-129 (193)
23 PF13499 EF-hand_7: EF-hand do 99.2 5.7E-11 1.2E-15 69.1 7.0 59 46-104 1-65 (66)
24 cd05027 S-100B S-100B: S-100B 99.2 2.1E-10 4.6E-15 70.5 8.2 65 43-107 6-79 (88)
25 KOG0036|consensus 99.1 4.6E-09 9.9E-14 79.6 14.2 88 9-105 55-144 (463)
26 KOG2643|consensus 99.1 5.1E-10 1.1E-14 85.1 8.4 121 14-147 208-347 (489)
27 KOG4223|consensus 99.1 9.4E-10 2E-14 80.9 9.1 136 12-147 120-270 (325)
28 smart00027 EH Eps15 homology d 99.1 9.3E-10 2E-14 68.8 8.0 63 44-108 9-73 (96)
29 cd05025 S-100A1 S-100A1: S-100 99.0 2E-09 4.3E-14 66.8 8.1 65 44-108 8-81 (92)
30 KOG4223|consensus 99.0 2.3E-09 5.1E-14 78.8 9.1 136 2-143 74-225 (325)
31 cd05026 S-100Z S-100Z: S-100Z 99.0 3.2E-09 6.8E-14 66.0 8.1 65 44-108 9-82 (93)
32 cd05031 S-100A10_like S-100A10 99.0 2.7E-09 5.9E-14 66.5 7.5 64 44-107 7-79 (94)
33 cd05029 S-100A6 S-100A6: S-100 99.0 4.5E-09 9.8E-14 64.6 8.1 65 44-108 9-80 (88)
34 KOG0041|consensus 99.0 9.8E-09 2.1E-13 70.8 10.2 120 24-153 87-210 (244)
35 cd00052 EH Eps15 homology doma 99.0 4.1E-09 8.9E-14 61.2 6.7 58 48-107 2-61 (67)
36 cd00213 S-100 S-100: S-100 dom 98.9 5.9E-09 1.3E-13 64.1 6.9 64 44-107 7-79 (88)
37 KOG0030|consensus 98.9 5.5E-09 1.2E-13 67.9 6.8 85 20-105 64-149 (152)
38 PF13833 EF-hand_8: EF-hand do 98.9 9.6E-09 2.1E-13 57.2 6.3 50 58-107 1-53 (54)
39 cd00051 EFh EF-hand, calcium b 98.9 2E-08 4.3E-13 56.8 7.2 59 47-105 2-62 (63)
40 PF14658 EF-hand_9: EF-hand do 98.8 2E-08 4.4E-13 57.5 6.3 59 49-107 2-64 (66)
41 KOG0031|consensus 98.8 4.4E-08 9.5E-13 64.9 8.7 66 42-107 98-165 (171)
42 PF13499 EF-hand_7: EF-hand do 98.8 6.5E-09 1.4E-13 60.3 4.2 63 82-144 1-66 (66)
43 KOG0377|consensus 98.8 8.8E-08 1.9E-12 73.4 11.1 116 45-160 464-593 (631)
44 cd05023 S-100A11 S-100A11: S-1 98.8 7.3E-08 1.6E-12 59.3 8.2 65 44-108 8-81 (89)
45 KOG0040|consensus 98.8 5.4E-08 1.2E-12 83.5 9.6 105 32-143 2245-2358(2399)
46 PF00036 EF-hand_1: EF hand; 98.7 2.1E-08 4.6E-13 48.4 3.7 29 119-147 1-29 (29)
47 KOG2643|consensus 98.7 3.4E-08 7.4E-13 75.4 6.4 127 13-147 294-454 (489)
48 KOG2562|consensus 98.6 3E-07 6.4E-12 70.8 9.5 130 12-147 232-380 (493)
49 PLN02964 phosphatidylserine de 98.6 4.9E-07 1.1E-11 73.5 11.0 93 11-107 149-243 (644)
50 cd05030 calgranulins Calgranul 98.6 2.3E-07 5E-12 57.0 7.2 65 44-108 7-80 (88)
51 cd00252 SPARC_EC SPARC_EC; ext 98.6 2.7E-07 5.8E-12 59.5 7.2 58 44-105 47-106 (116)
52 KOG0038|consensus 98.5 1.2E-06 2.6E-11 57.7 8.9 131 20-159 6-150 (189)
53 PF13405 EF-hand_6: EF-hand do 98.5 1.8E-07 3.8E-12 45.9 3.7 30 119-148 1-31 (31)
54 KOG0038|consensus 98.5 5.3E-07 1.2E-11 59.3 6.7 91 13-106 79-176 (189)
55 PF00036 EF-hand_1: EF hand; 98.5 3E-07 6.5E-12 44.3 3.8 29 46-74 1-29 (29)
56 PF13833 EF-hand_8: EF-hand do 98.5 9.2E-07 2E-11 49.1 6.0 50 94-146 3-53 (54)
57 cd05022 S-100A13 S-100A13: S-1 98.4 1.4E-06 3E-11 53.6 6.7 65 82-148 9-77 (89)
58 cd00051 EFh EF-hand, calcium b 98.4 3E-06 6.5E-11 47.6 7.2 59 83-144 2-62 (63)
59 PF13405 EF-hand_6: EF-hand do 98.3 9.7E-07 2.1E-11 43.2 3.8 30 46-75 1-31 (31)
60 smart00027 EH Eps15 homology d 98.3 6.6E-06 1.4E-10 51.3 8.6 61 82-147 11-73 (96)
61 KOG0377|consensus 98.3 1.6E-05 3.4E-10 61.4 10.7 134 9-147 468-616 (631)
62 cd00252 SPARC_EC SPARC_EC; ext 98.3 6.5E-06 1.4E-10 53.1 7.2 61 77-144 44-106 (116)
63 cd05026 S-100Z S-100Z: S-100Z 98.2 1.1E-05 2.4E-10 50.1 7.7 67 82-148 11-83 (93)
64 cd05029 S-100A6 S-100A6: S-100 98.2 1.4E-05 3E-10 49.1 7.9 66 83-148 12-81 (88)
65 PF13202 EF-hand_5: EF hand; P 98.2 1.9E-06 4.2E-11 40.0 3.1 25 120-144 1-25 (25)
66 cd00213 S-100 S-100: S-100 dom 98.2 1.4E-05 3E-10 49.0 7.6 67 81-147 8-80 (88)
67 cd05027 S-100B S-100B: S-100B 98.2 1.6E-05 3.4E-10 48.8 7.8 67 82-148 9-81 (88)
68 cd00052 EH Eps15 homology doma 98.2 9.3E-06 2E-10 46.8 6.4 60 84-148 2-63 (67)
69 cd05025 S-100A1 S-100A1: S-100 98.2 2.1E-05 4.5E-10 48.7 8.0 69 80-148 8-82 (92)
70 cd05024 S-100A10 S-100A10: A s 98.2 3.2E-05 6.9E-10 47.4 8.2 64 44-108 7-77 (91)
71 KOG4251|consensus 98.1 4.6E-06 9.9E-11 59.7 4.7 132 8-142 104-260 (362)
72 cd05031 S-100A10_like S-100A10 98.0 3.9E-05 8.4E-10 47.6 7.2 69 81-149 8-82 (94)
73 PF12763 EF-hand_4: Cytoskelet 98.0 3.4E-05 7.5E-10 48.7 6.4 67 33-107 3-71 (104)
74 cd05030 calgranulins Calgranul 98.0 4.5E-05 9.8E-10 46.8 6.6 66 83-148 10-81 (88)
75 PF13202 EF-hand_5: EF hand; P 97.9 1.8E-05 3.9E-10 36.6 3.2 25 47-71 1-25 (25)
76 cd05023 S-100A11 S-100A11: S-1 97.9 0.00014 3.1E-09 44.7 7.7 66 83-148 11-82 (89)
77 PF14788 EF-hand_10: EF hand; 97.8 9.3E-05 2E-09 40.1 5.5 45 62-106 2-48 (51)
78 KOG0751|consensus 97.8 0.00036 7.9E-09 54.8 9.7 100 44-148 32-138 (694)
79 PF14788 EF-hand_10: EF hand; 97.7 0.00019 4.2E-09 38.9 5.6 50 95-147 1-50 (51)
80 PF14658 EF-hand_9: EF-hand do 97.7 0.00032 6.8E-09 40.3 6.5 59 86-146 3-64 (66)
81 PRK12309 transaldolase/EF-hand 97.7 0.00024 5.2E-09 55.2 7.8 57 75-147 328-386 (391)
82 KOG0046|consensus 97.7 0.00017 3.8E-09 56.8 7.0 72 32-109 11-87 (627)
83 cd05024 S-100A10 S-100A10: A s 97.7 0.00061 1.3E-08 41.8 8.0 66 83-148 10-78 (91)
84 PRK12309 transaldolase/EF-hand 97.5 0.00033 7.2E-09 54.4 6.6 52 44-108 333-386 (391)
85 KOG4251|consensus 97.5 0.00029 6.4E-09 50.6 5.4 133 10-146 145-309 (362)
86 KOG0169|consensus 97.4 0.0021 4.6E-08 52.9 10.0 111 44-161 135-249 (746)
87 KOG4666|consensus 97.4 0.00071 1.5E-08 50.6 6.3 99 45-147 259-360 (412)
88 PF12763 EF-hand_4: Cytoskelet 97.3 0.0021 4.5E-08 40.7 7.4 59 82-145 11-70 (104)
89 smart00054 EFh EF-hand, calciu 97.3 0.00033 7.3E-09 32.4 3.0 27 120-146 2-28 (29)
90 KOG2562|consensus 97.3 0.0027 5.8E-08 49.6 8.8 122 14-142 287-420 (493)
91 KOG0041|consensus 97.2 0.0039 8.5E-08 43.6 8.1 90 8-101 102-197 (244)
92 PF10591 SPARC_Ca_bdg: Secrete 97.2 0.00053 1.2E-08 44.0 3.5 27 46-72 55-81 (113)
93 smart00054 EFh EF-hand, calciu 97.0 0.001 2.2E-08 30.7 3.0 27 47-73 2-28 (29)
94 KOG0169|consensus 97.0 0.019 4E-07 47.7 11.2 130 9-146 140-274 (746)
95 PF10591 SPARC_Ca_bdg: Secrete 96.6 0.00088 1.9E-08 43.0 1.1 63 75-142 48-112 (113)
96 KOG4666|consensus 96.5 0.0073 1.6E-07 45.3 5.5 85 57-147 239-325 (412)
97 PF09279 EF-hand_like: Phospho 96.5 0.0091 2E-07 35.9 5.1 59 47-106 2-68 (83)
98 PF09279 EF-hand_like: Phospho 96.3 0.013 2.8E-07 35.2 5.0 66 82-148 1-71 (83)
99 PF05042 Caleosin: Caleosin re 96.1 0.023 5E-07 39.0 5.7 103 46-148 8-126 (174)
100 KOG1707|consensus 95.9 0.08 1.7E-06 43.0 8.8 105 44-148 194-345 (625)
101 KOG0035|consensus 95.7 0.071 1.5E-06 45.4 8.2 96 44-142 746-848 (890)
102 KOG0042|consensus 95.5 0.035 7.5E-07 44.9 5.2 72 34-110 587-660 (680)
103 KOG4065|consensus 95.0 0.15 3.3E-06 32.6 6.2 55 49-103 71-141 (144)
104 KOG4065|consensus 94.9 0.092 2E-06 33.6 5.0 70 1-70 63-142 (144)
105 KOG0040|consensus 94.9 0.18 4E-06 45.3 8.3 83 78-160 2247-2340(2399)
106 PF05517 p25-alpha: p25-alpha 94.2 0.37 8E-06 32.7 7.0 62 48-109 2-71 (154)
107 KOG1955|consensus 93.8 0.21 4.5E-06 39.9 5.8 60 8-73 234-293 (737)
108 KOG0046|consensus 93.0 0.59 1.3E-05 37.7 7.1 71 77-147 12-86 (627)
109 PLN02952 phosphoinositide phos 92.9 1.6 3.5E-05 36.2 9.8 87 58-145 13-109 (599)
110 PLN02952 phosphoinositide phos 92.3 1.1 2.3E-05 37.2 8.1 64 94-159 15-80 (599)
111 PF05517 p25-alpha: p25-alpha 92.2 1 2.2E-05 30.5 6.8 55 94-148 17-71 (154)
112 KOG1955|consensus 92.0 0.48 1E-05 38.0 5.6 67 34-107 225-293 (737)
113 KOG1265|consensus 91.9 5.1 0.00011 34.8 11.5 79 22-107 205-299 (1189)
114 KOG1029|consensus 91.7 0.3 6.5E-06 41.1 4.3 62 5-72 195-256 (1118)
115 KOG3555|consensus 91.4 0.7 1.5E-05 35.3 5.7 96 46-148 212-312 (434)
116 KOG2243|consensus 91.3 0.63 1.4E-05 42.0 5.9 56 50-106 4062-4119(5019)
117 KOG1029|consensus 91.0 0.39 8.6E-06 40.5 4.4 61 44-106 194-256 (1118)
118 KOG4347|consensus 90.9 0.49 1.1E-05 39.0 4.7 57 80-140 554-612 (671)
119 KOG3866|consensus 90.8 2.9 6.4E-05 31.7 8.3 24 49-72 248-271 (442)
120 KOG4347|consensus 90.2 0.78 1.7E-05 37.9 5.3 77 22-101 535-612 (671)
121 KOG4578|consensus 89.1 0.26 5.6E-06 37.4 1.7 28 45-72 370-397 (421)
122 KOG3555|consensus 88.9 0.81 1.7E-05 35.0 4.2 56 12-75 257-312 (434)
123 PF11116 DUF2624: Protein of u 86.4 1.7 3.7E-05 26.3 3.8 30 133-162 13-42 (85)
124 PF08726 EFhand_Ca_insen: Ca2+ 85.5 1 2.2E-05 26.2 2.5 29 116-145 4-32 (69)
125 PLN02228 Phosphoinositide phos 84.3 7.4 0.00016 32.2 7.8 67 78-145 21-91 (567)
126 PF14513 DAG_kinase_N: Diacylg 83.6 2.7 5.9E-05 28.0 4.2 68 60-131 6-82 (138)
127 KOG1707|consensus 83.1 2.8 6E-05 34.5 4.8 62 44-107 314-377 (625)
128 PF00404 Dockerin_1: Dockerin 82.9 2.2 4.8E-05 18.6 2.4 18 128-145 1-18 (21)
129 PF08414 NADPH_Ox: Respiratory 82.7 2.9 6.4E-05 26.0 3.8 59 44-107 29-92 (100)
130 KOG2871|consensus 82.1 2.7 5.9E-05 32.6 4.2 45 114-158 305-349 (449)
131 PF05042 Caleosin: Caleosin re 79.7 18 0.00038 25.1 7.5 64 78-144 93-164 (174)
132 KOG4578|consensus 78.7 1.7 3.7E-05 33.1 2.2 63 82-146 334-398 (421)
133 KOG4004|consensus 76.9 1.2 2.7E-05 31.4 1.0 48 18-71 201-248 (259)
134 KOG1264|consensus 76.2 6.3 0.00014 34.0 4.9 103 49-151 148-254 (1267)
135 KOG2871|consensus 76.0 4.6 9.9E-05 31.4 3.8 60 44-103 308-370 (449)
136 KOG1265|consensus 74.5 62 0.0013 28.7 11.6 99 54-161 157-274 (1189)
137 PF11116 DUF2624: Protein of u 74.3 17 0.00036 22.1 6.4 66 61-126 14-81 (85)
138 PF08414 NADPH_Ox: Respiratory 73.6 19 0.00042 22.5 5.7 64 79-148 28-94 (100)
139 PF09069 EF-hand_3: EF-hand; 71.7 21 0.00045 21.9 7.6 62 45-107 3-75 (90)
140 PLN02222 phosphoinositide phos 71.0 26 0.00056 29.3 7.2 60 45-106 25-89 (581)
141 PF08726 EFhand_Ca_insen: Ca2+ 70.1 5.9 0.00013 23.0 2.6 55 44-103 5-65 (69)
142 PLN02230 phosphoinositide phos 69.4 30 0.00065 29.0 7.3 29 45-74 29-57 (598)
143 KOG0998|consensus 69.3 2.3 5E-05 36.9 1.0 62 44-107 282-345 (847)
144 PLN02228 Phosphoinositide phos 69.2 32 0.00069 28.7 7.4 61 44-106 23-91 (567)
145 PF09068 EF-hand_2: EF hand; 69.0 7.8 0.00017 25.4 3.3 28 120-147 99-126 (127)
146 cd07313 terB_like_2 tellurium 68.2 25 0.00055 21.6 5.7 81 58-142 12-96 (104)
147 PLN02222 phosphoinositide phos 67.9 27 0.00059 29.1 6.8 14 19-32 37-50 (581)
148 KOG3449|consensus 67.6 29 0.00063 22.1 6.2 51 49-102 5-55 (112)
149 PLN02230 phosphoinositide phos 66.4 30 0.00066 29.0 6.8 68 79-146 27-102 (598)
150 cd08815 Death_TNFRSF25_DR3 Dea 65.0 12 0.00026 22.2 3.2 26 134-161 8-33 (77)
151 PF12174 RST: RCD1-SRO-TAF4 (R 64.5 15 0.00033 21.3 3.5 30 117-146 24-53 (70)
152 PF07879 PHB_acc_N: PHB/PHA ac 64.5 5.9 0.00013 22.5 1.7 23 125-147 10-32 (64)
153 PF09069 EF-hand_3: EF-hand; 64.2 18 0.00039 22.2 4.0 27 119-146 4-30 (90)
154 PF09336 Vps4_C: Vps4 C termin 63.4 10 0.00022 21.4 2.6 27 134-160 29-55 (62)
155 PF05819 NolX: NolX protein; 62.3 88 0.0019 25.7 9.6 78 83-162 370-457 (624)
156 PF01023 S_100: S-100/ICaBP ty 61.3 22 0.00048 18.5 3.7 30 44-73 5-36 (44)
157 PHA02105 hypothetical protein 60.9 18 0.0004 20.1 3.2 47 61-107 4-57 (68)
158 PF10897 DUF2713: Protein of u 60.3 13 0.00028 26.3 3.1 54 9-62 165-226 (246)
159 PF03672 UPF0154: Uncharacteri 60.3 19 0.00042 20.5 3.3 29 132-160 29-57 (64)
160 PF06384 ICAT: Beta-catenin-in 58.7 15 0.00033 21.8 2.8 22 139-160 21-42 (78)
161 PTZ00373 60S Acidic ribosomal 56.0 52 0.0011 21.1 5.2 50 51-103 9-58 (112)
162 cd08313 Death_TNFR1 Death doma 54.9 24 0.00053 21.1 3.4 26 134-161 8-33 (80)
163 cd00076 H4 Histone H4, one of 52.2 52 0.0011 20.0 7.9 68 77-151 13-82 (85)
164 PF08976 DUF1880: Domain of un 51.9 16 0.00035 23.5 2.4 29 78-106 4-34 (118)
165 PF05099 TerB: Tellurite resis 51.2 19 0.0004 23.5 2.8 95 58-158 36-137 (140)
166 KOG0506|consensus 50.4 1.3E+02 0.0027 24.8 7.4 58 49-106 90-157 (622)
167 PF13829 DUF4191: Domain of un 49.3 36 0.00078 24.7 4.0 35 127-161 160-194 (224)
168 PF01325 Fe_dep_repress: Iron 48.9 24 0.00052 19.7 2.6 48 44-98 7-54 (60)
169 KOG4070|consensus 48.0 75 0.0016 21.6 5.1 84 45-128 12-108 (180)
170 PRK00523 hypothetical protein; 48.0 38 0.00082 19.8 3.3 28 133-160 38-65 (72)
171 PTZ00015 histone H4; Provision 47.8 69 0.0015 20.2 8.0 68 77-151 30-99 (102)
172 PRK14981 DNA-directed RNA poly 46.8 40 0.00087 21.5 3.7 25 117-145 81-105 (112)
173 KOG4403|consensus 46.4 68 0.0015 25.8 5.4 103 57-165 40-149 (575)
174 cd05833 Ribosomal_P2 Ribosomal 45.9 77 0.0017 20.2 5.2 52 51-105 7-58 (109)
175 TIGR03573 WbuX N-acetyl sugar 45.7 55 0.0012 25.3 4.9 65 67-144 276-342 (343)
176 PF07308 DUF1456: Protein of u 45.3 60 0.0013 18.7 5.3 32 62-93 14-45 (68)
177 PF06648 DUF1160: Protein of u 45.1 40 0.00087 22.0 3.4 9 150-158 98-106 (122)
178 cd08315 Death_TRAILR_DR4_DR5 D 44.9 74 0.0016 19.6 9.1 88 45-161 4-91 (96)
179 PF09068 EF-hand_2: EF hand; 44.3 28 0.00062 22.7 2.7 26 49-74 101-126 (127)
180 PF14513 DAG_kinase_N: Diacylg 43.9 96 0.0021 20.7 5.7 34 131-164 45-79 (138)
181 KOG1908|consensus 43.7 95 0.0021 20.6 6.0 64 94-163 73-136 (165)
182 PF02761 Cbl_N2: CBL proto-onc 42.9 77 0.0017 19.3 6.2 68 78-148 4-72 (85)
183 PF09373 PMBR: Pseudomurein-bi 42.4 32 0.00069 16.6 2.1 17 131-147 1-17 (33)
184 PRK00819 RNA 2'-phosphotransfe 42.1 49 0.0011 23.1 3.8 31 129-159 28-58 (179)
185 PF10437 Lip_prot_lig_C: Bacte 42.0 65 0.0014 19.1 3.9 41 63-105 43-86 (86)
186 PF01885 PTS_2-RNA: RNA 2'-pho 41.4 58 0.0013 22.8 4.1 39 55-93 26-64 (186)
187 PRK01844 hypothetical protein; 40.7 57 0.0012 19.1 3.3 28 133-160 37-64 (72)
188 PF07862 Nif11: Nitrogen fixat 40.5 41 0.00088 17.7 2.6 33 118-157 17-49 (49)
189 TIGR01848 PHA_reg_PhaR polyhyd 40.5 23 0.00051 22.4 1.8 23 125-147 10-32 (107)
190 PF15337 Vasculin: Vascular pr 39.6 64 0.0014 19.9 3.5 12 150-161 33-44 (97)
191 PRK00819 RNA 2'-phosphotransfe 39.3 85 0.0018 21.9 4.6 39 55-93 27-65 (179)
192 cd06404 PB1_aPKC PB1 domain is 39.1 88 0.0019 18.9 4.6 44 94-137 18-78 (83)
193 KOG3866|consensus 39.1 40 0.00087 25.8 3.1 71 9-80 248-331 (442)
194 KOG4286|consensus 37.6 1.3E+02 0.0028 26.2 6.0 90 10-106 475-579 (966)
195 TIGR03798 ocin_TIGR03798 bacte 37.5 62 0.0013 18.2 3.1 24 135-158 25-48 (64)
196 PF02885 Glycos_trans_3N: Glyc 37.2 53 0.0012 18.5 2.9 30 133-162 13-43 (66)
197 KOG0039|consensus 37.0 83 0.0018 26.8 5.0 77 19-106 2-88 (646)
198 KOG1954|consensus 36.8 41 0.00089 26.7 2.9 25 78-102 474-500 (532)
199 cd04411 Ribosomal_P1_P2_L12p R 36.8 1.1E+02 0.0024 19.3 5.8 41 62-105 17-57 (105)
200 PF01885 PTS_2-RNA: RNA 2'-pho 36.7 54 0.0012 23.0 3.3 32 128-159 26-57 (186)
201 KOG0035|consensus 36.5 1.6E+02 0.0034 26.2 6.5 66 82-149 748-819 (890)
202 TIGR01639 P_fal_TIGR01639 Plas 36.3 75 0.0016 17.8 3.3 23 134-156 9-31 (61)
203 TIGR00135 gatC glutamyl-tRNA(G 35.5 90 0.002 18.9 3.9 26 135-160 1-26 (93)
204 KOG4301|consensus 35.3 98 0.0021 24.1 4.6 61 50-110 115-176 (434)
205 cd08784 Death_DRs Death Domain 34.9 77 0.0017 18.7 3.4 25 135-161 9-33 (79)
206 PRK09430 djlA Dna-J like membr 34.8 1.9E+02 0.0042 21.5 8.0 99 57-160 67-172 (267)
207 PRK00034 gatC aspartyl/glutamy 34.7 82 0.0018 19.1 3.6 27 134-160 2-28 (95)
208 PF03979 Sigma70_r1_1: Sigma-7 34.6 48 0.001 19.7 2.5 23 83-105 9-31 (82)
209 KOG0042|consensus 34.2 68 0.0015 26.9 3.9 36 122-157 597-632 (680)
210 PF11593 Med3: Mediator comple 34.0 1.9E+02 0.0041 22.8 6.0 51 60-112 6-59 (379)
211 KOG1954|consensus 33.7 1.1E+02 0.0024 24.4 4.8 57 84-145 447-504 (532)
212 COG4103 Uncharacterized protei 33.7 1.5E+02 0.0033 20.0 8.5 105 44-156 29-140 (148)
213 PLN00138 large subunit ribosom 33.2 1.3E+02 0.0029 19.2 5.1 43 57-102 13-55 (113)
214 PF10815 ComZ: ComZ; InterPro 32.7 71 0.0015 17.5 2.6 25 139-163 16-40 (56)
215 cd08324 CARD_NOD1_CARD4 Caspas 32.6 1.2E+02 0.0026 18.4 4.0 49 17-74 25-73 (85)
216 KOG3449|consensus 31.7 1.4E+02 0.0031 19.1 4.5 38 122-159 5-42 (112)
217 PF08461 HTH_12: Ribonuclease 31.3 74 0.0016 18.1 2.8 37 58-94 10-46 (66)
218 cd07316 terB_like_DjlA N-termi 31.2 1.3E+02 0.0027 18.3 6.7 81 58-141 12-96 (106)
219 KOG2301|consensus 31.2 57 0.0012 30.8 3.3 64 44-107 1416-1484(1592)
220 COG3763 Uncharacterized protei 30.9 1.1E+02 0.0025 17.7 4.6 32 59-90 36-67 (71)
221 KOG2301|consensus 30.7 47 0.001 31.4 2.7 35 117-151 1416-1450(1592)
222 KOG3077|consensus 30.4 2.3E+02 0.0051 21.1 8.5 65 44-108 63-130 (260)
223 COG0721 GatC Asp-tRNAAsn/Glu-t 30.3 99 0.0021 19.1 3.4 27 134-160 2-28 (96)
224 PLN00035 histone H4; Provision 30.3 1.5E+02 0.0032 18.8 7.9 67 78-151 30-98 (103)
225 KOG2303|consensus 30.1 3.3E+02 0.0071 22.8 7.9 98 45-163 520-639 (706)
226 COG2036 HHT1 Histones H3 and H 29.2 1.4E+02 0.0031 18.3 6.0 80 65-151 7-88 (91)
227 PF02037 SAP: SAP domain; Int 28.9 77 0.0017 15.4 2.3 18 134-151 3-20 (35)
228 PF00690 Cation_ATPase_N: Cati 28.5 81 0.0018 17.7 2.7 31 120-150 6-36 (69)
229 cd07894 Adenylation_RNA_ligase 28.3 1.1E+02 0.0024 23.8 4.1 104 55-159 135-251 (342)
230 PLN02223 phosphoinositide phos 28.3 3.1E+02 0.0068 22.9 6.7 14 133-146 79-92 (537)
231 PF12995 DUF3879: Domain of un 28.2 2.1E+02 0.0045 19.8 5.5 40 62-101 2-42 (186)
232 KOG0719|consensus 27.9 2E+02 0.0043 21.3 5.0 26 138-163 93-118 (264)
233 PF11829 DUF3349: Protein of u 27.8 1.6E+02 0.0034 18.4 4.3 45 115-159 36-81 (96)
234 PF08671 SinI: Anti-repressor 27.8 61 0.0013 15.4 1.7 12 135-146 17-28 (30)
235 PF12631 GTPase_Cys_C: Catalyt 27.7 1.3E+02 0.0028 17.3 3.9 45 46-90 24-72 (73)
236 PF11629 Mst1_SARAH: C termina 27.7 39 0.00085 18.1 1.1 28 134-162 7-34 (49)
237 KOG0998|consensus 27.6 38 0.00082 29.8 1.6 58 10-73 288-345 (847)
238 PF07466 DUF1517: Protein of u 27.4 22 0.00047 26.9 0.1 29 134-163 237-265 (289)
239 cd08332 CARD_CASP2 Caspase act 27.2 1.5E+02 0.0033 18.0 4.2 46 59-107 32-77 (90)
240 smart00513 SAP Putative DNA-bi 26.8 87 0.0019 15.0 2.5 19 134-152 3-21 (35)
241 KOG4286|consensus 26.6 3E+02 0.0064 24.2 6.4 95 49-145 474-579 (966)
242 TIGR00624 tag DNA-3-methyladen 26.1 1.8E+02 0.0038 20.4 4.4 104 45-149 53-168 (179)
243 cd08327 CARD_RAIDD Caspase act 25.9 1.7E+02 0.0037 18.0 4.5 47 58-107 32-78 (94)
244 TIGR01669 phage_XkdX phage unc 25.8 1.1E+02 0.0023 16.1 2.6 25 133-159 16-40 (45)
245 cd07176 terB tellurite resista 24.9 83 0.0018 19.2 2.5 79 58-140 15-99 (111)
246 PF13331 DUF4093: Domain of un 24.9 1.4E+02 0.003 18.2 3.3 25 133-159 61-85 (87)
247 PLN02223 phosphoinositide phos 24.2 3.7E+02 0.0081 22.5 6.5 63 44-107 15-92 (537)
248 smart00657 RPOL4c DNA-directed 24.1 1.3E+02 0.0029 19.2 3.3 26 136-161 84-109 (118)
249 PF09873 DUF2100: Uncharacteri 24.0 1.7E+02 0.0037 21.0 4.0 14 94-107 40-53 (215)
250 PF00248 Aldo_ket_red: Aldo/ke 23.6 72 0.0016 23.4 2.3 33 132-164 251-283 (283)
251 PF03874 RNA_pol_Rpb4: RNA pol 23.3 94 0.002 19.6 2.5 15 76-90 52-66 (117)
252 PF11422 IBP39: Initiator bind 23.2 2.7E+02 0.0059 19.5 6.4 17 132-148 73-89 (181)
253 COG1448 TyrB Aspartate/tyrosin 23.2 1.4E+02 0.0031 23.6 3.8 39 124-163 147-201 (396)
254 TIGR01209 RNA ligase, Pab1020 22.6 2.3E+02 0.0049 22.5 4.8 109 50-158 162-283 (374)
255 COG3820 Uncharacterized protei 22.3 68 0.0015 22.5 1.7 52 94-145 19-70 (230)
256 PF08044 DUF1707: Domain of un 21.9 1.5E+02 0.0033 16.1 2.9 31 58-88 20-50 (53)
257 COG4371 Predicted membrane pro 21.5 32 0.0007 25.4 0.1 33 130-163 278-310 (334)
258 PF03732 Retrotrans_gag: Retro 21.4 1.8E+02 0.004 16.8 4.6 12 96-107 27-38 (96)
259 PF09693 Phage_XkdX: Phage unc 21.2 1.3E+02 0.0028 15.2 2.3 24 133-158 11-34 (40)
260 PF06226 DUF1007: Protein of u 20.8 1.1E+02 0.0023 21.9 2.6 25 124-148 56-80 (212)
261 cd03515 Link_domain_TSG_6_like 20.6 1.8E+02 0.0039 18.0 3.2 36 124-159 3-39 (93)
262 cd01102 Link_Domain The link d 20.1 1E+02 0.0022 19.0 2.0 34 126-159 5-39 (92)
263 PF03131 bZIP_Maf: bZIP Maf tr 20.1 1E+02 0.0022 18.8 2.1 21 135-159 9-29 (92)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.92 E-value=1.8e-23 Score=140.08 Aligned_cols=130 Identities=32% Similarity=0.537 Sum_probs=120.0
Q ss_pred HHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC-CcccHHHHHHHHH
Q psy13766 28 LFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD-ERISFEVFLPIYQ 106 (165)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~-g~isf~eF~~~~~ 106 (165)
+....+++..+ +++|+.+|+.+|++++|.|+..++..+++.+|..++..++..++..++.+ +.|+|.+|+.+|.
T Consensus 8 ~~~~~~~t~~q-----i~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms 82 (160)
T COG5126 8 LLTFTQLTEEQ-----IQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMS 82 (160)
T ss_pred hhhcccCCHHH-----HHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHH
Confidence 33456788888 99999999999999999999999999999999999999999999999887 9999999999999
Q ss_pred hhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q psy13766 107 AISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEVIWV 164 (165)
Q Consensus 107 ~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~~~~~~~ 164 (165)
. ......+.+++..+|+.||.+++|+|+..+++.+++.+|..++++|++.+...+.
T Consensus 83 ~--~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d 138 (160)
T COG5126 83 V--KLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYD 138 (160)
T ss_pred H--HhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcC
Confidence 8 4445677899999999999999999999999999999999999999999988765
No 2
>KOG0027|consensus
Probab=99.86 E-value=2.1e-20 Score=126.68 Aligned_cols=117 Identities=42% Similarity=0.697 Sum_probs=105.5
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCC--CHHH
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSAD--TADD 119 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~--~~~~ 119 (165)
...++.+|..||.+++|.|+..++..+++.+|..++..++..++..+|.+ |.|+|++|+.++.......... ..+.
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 68899999999999999999999999999999999999999999999987 9999999999998743322221 3568
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy13766 120 FIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKE 160 (165)
Q Consensus 120 ~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~~~ 160 (165)
+..+|+.||.+++|+||.++|+.++..+|.+++++++++..
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi 127 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMI 127 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHH
Confidence 99999999999999999999999999999999998888754
No 3
>KOG0030|consensus
Probab=99.84 E-value=9.5e-20 Score=117.37 Aligned_cols=117 Identities=53% Similarity=0.824 Sum_probs=111.1
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC----CcccHHHHHHHHHhhhcCCCCCCHHH
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD----ERISFEVFLPIYQAISKGRSADTADD 119 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~----g~isf~eF~~~~~~~~~~~~~~~~~~ 119 (165)
..+++.+|..||..+||+|+..+...+|+++|.+|++.++.+....+..+ .+++|++|+.+++.+.+......-+.
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ed 89 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYED 89 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHH
Confidence 78999999999999999999999999999999999999999999988776 78999999999999888887888899
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy13766 120 FIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKE 160 (165)
Q Consensus 120 ~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~~~ 160 (165)
+..-++.||++++|+|...+|+++|..+|.+||++|++++.
T Consensus 90 fvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Ll 130 (152)
T KOG0030|consen 90 FVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELL 130 (152)
T ss_pred HHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHH
Confidence 99999999999999999999999999999999999999874
No 4
>KOG0031|consensus
Probab=99.82 E-value=6.5e-19 Score=115.40 Aligned_cols=122 Identities=26% Similarity=0.445 Sum_probs=111.5
Q ss_pred cCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCcccHHHHHHHHHhhhcC
Q psy13766 32 YGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQAISKG 111 (165)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~g~isf~eF~~~~~~~~~~ 111 (165)
+.+++.+ +++++.+|..+|.|+||.|+.++++..+..+|..+++++|+.++.+.. |.|+|.-|+.++.. +.
T Consensus 24 amf~q~Q-----IqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~--gPINft~FLTmfGe--kL 94 (171)
T KOG0031|consen 24 AMFDQSQ-----IQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAP--GPINFTVFLTMFGE--KL 94 (171)
T ss_pred HHhhHHH-----HHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCC--CCeeHHHHHHHHHH--Hh
Confidence 4466777 999999999999999999999999999999999999999999998865 99999999999887 55
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy13766 112 RSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEVI 162 (165)
Q Consensus 112 ~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~~~~~ 162 (165)
....+++.+..+|+.||.+++|+|..+.|+++|.+.|.+++++|+++..--
T Consensus 95 ~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~ 145 (171)
T KOG0031|consen 95 NGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYRE 145 (171)
T ss_pred cCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHh
Confidence 556778999999999999999999999999999999999999999987643
No 5
>KOG0028|consensus
Probab=99.79 E-value=4.6e-18 Score=112.14 Aligned_cols=113 Identities=30% Similarity=0.446 Sum_probs=105.0
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHH
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFI 121 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~ 121 (165)
.++++..|..||++++|+|+.+|++.+++++|..+...++.+++..+|.+ |.|+|++|+..+... .....+.+++.
T Consensus 32 ~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k--~~e~dt~eEi~ 109 (172)
T KOG0028|consen 32 KQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVK--LGERDTKEEIK 109 (172)
T ss_pred HhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHH--HhccCcHHHHH
Confidence 68999999999999999999999999999999999999999999999987 999999999998763 33345789999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHH
Q psy13766 122 EGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVE 158 (165)
Q Consensus 122 ~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~ 158 (165)
.+|+.+|-+++|.|+..+|+.+.+.+|..|+++|+.+
T Consensus 110 ~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~e 146 (172)
T KOG0028|consen 110 KAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELME 146 (172)
T ss_pred HHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHH
Confidence 9999999999999999999999999999999999883
No 6
>PTZ00183 centrin; Provisional
Probab=99.76 E-value=5e-17 Score=110.59 Aligned_cols=121 Identities=28% Similarity=0.428 Sum_probs=100.9
Q ss_pred CCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcC
Q psy13766 34 YEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKG 111 (165)
Q Consensus 34 ~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~ 111 (165)
+++.+ .+++..+|..+|.+++|.|+..+|..+++.+|..++...+..++..+|.+ |.|+|.+|...+....
T Consensus 11 ~~~~~-----~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~-- 83 (158)
T PTZ00183 11 LTEDQ-----KKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKL-- 83 (158)
T ss_pred CCHHH-----HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHh--
Confidence 45555 78889999999999999999999999999888888888899999998877 8899999988776532
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy13766 112 RSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEV 161 (165)
Q Consensus 112 ~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~~~~ 161 (165)
......+.+..+|+.+|.+++|.|+.++|..++..+|.+++++++.++..
T Consensus 84 ~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~ 133 (158)
T PTZ00183 84 GERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMID 133 (158)
T ss_pred cCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 22345677889999999999999999999999999998899888876653
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.74 E-value=1.8e-16 Score=106.65 Aligned_cols=115 Identities=41% Similarity=0.707 Sum_probs=97.1
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHH
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFI 121 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~ 121 (165)
.+.++..|..+|.+++|.|+..+|..++..++..++...+..++..+|.+ |.|+|++|+..+..... .......+.
T Consensus 10 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~--~~~~~~~~~ 87 (149)
T PTZ00184 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMK--DTDSEEEIK 87 (149)
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhcc--CCcHHHHHH
Confidence 67888999999999999999999999999888888888899999999877 88999999988765321 123456788
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy13766 122 EGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKE 160 (165)
Q Consensus 122 ~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~~~ 160 (165)
.+|+.+|.+++|.|+.++|..++..++.+++.++++++.
T Consensus 88 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 126 (149)
T PTZ00184 88 EAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 126 (149)
T ss_pred HHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 899999999999999999999999998888888877654
No 8
>KOG0037|consensus
Probab=99.73 E-value=7.3e-17 Score=111.81 Aligned_cols=117 Identities=17% Similarity=0.243 Sum_probs=104.1
Q ss_pred HHhhhhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q psy13766 8 IMLKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYS 87 (165)
Q Consensus 8 ~~~~~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~ 87 (165)
.++.++.|.+..|+|.+.||..+.+. ++.|+.+|+.||.|++|.|+..||+++|..+|..++...++.++
T Consensus 97 rlmI~mfd~~~~G~i~f~EF~~Lw~~----------i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv 166 (221)
T KOG0037|consen 97 RLMISMFDRDNSGTIGFKEFKALWKY----------INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLV 166 (221)
T ss_pred HHHHHHhcCCCCCccCHHHHHHHHHH----------HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHH
Confidence 34456669999999999999999864 78999999999999999999999999999999999999999999
Q ss_pred HhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcc--cHHHHHHH
Q psy13766 88 QQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFI--SSAELRHL 143 (165)
Q Consensus 88 ~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i--~~~e~~~~ 143 (165)
+.||.. |.|.|++|+.++..+ ..+..+|+.+|++.+|.| +.++|.++
T Consensus 167 ~kyd~~~~g~i~FD~FI~ccv~L---------~~lt~~Fr~~D~~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 167 RKYDRFGGGRIDFDDFIQCCVVL---------QRLTEAFRRRDTAQQGSITISYDDFLQM 217 (221)
T ss_pred HHhccccCCceeHHHHHHHHHHH---------HHHHHHHHHhccccceeEEEeHHHHHHH
Confidence 999854 899999999999884 458999999999999986 45777654
No 9
>PTZ00183 centrin; Provisional
Probab=99.65 E-value=1.8e-14 Score=97.88 Aligned_cols=133 Identities=15% Similarity=0.187 Sum_probs=110.0
Q ss_pred HHHhhhhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHH
Q psy13766 7 EIMLKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRAL-GQNPTECDVKK 85 (165)
Q Consensus 7 ~~~~~~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l-~~~~~~~~~~~ 85 (165)
....+..+|++++|.|+..+|...+..+.... ....+..+|..+|.+++|.|+..+|..++... ........++.
T Consensus 19 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~----~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~ 94 (158)
T PTZ00183 19 IREAFDLFDTDGSGTIDPKELKVAMRSLGFEP----KKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILK 94 (158)
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC----CHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHH
Confidence 34456778999999999999988886543211 24678899999999999999999999987654 44566788999
Q ss_pred HHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13766 86 YSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTT 146 (165)
Q Consensus 86 ~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~ 146 (165)
+|..+|.+ |.|+..+|..++..+ ........+..+|..+|.+++|.|+.++|..++..
T Consensus 95 ~F~~~D~~~~G~i~~~e~~~~l~~~---~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 95 AFRLFDDDKTGKISLKNLKRVAKEL---GETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 99999988 999999999998763 22466788999999999999999999999998865
No 10
>KOG0044|consensus
Probab=99.64 E-value=8.6e-15 Score=101.57 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=117.5
Q ss_pred hhhhHHHhhhhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHH
Q psy13766 3 EQRTEIMLKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECD 82 (165)
Q Consensus 3 ~~~~~~~~~~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~ 82 (165)
.+...+...+..-...+|.++-++|..+++.+-+.. ++......+|..+|.|++|.|+..||..+++.+.....+..
T Consensus 25 ~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~g---d~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eek 101 (193)
T KOG0044|consen 25 KKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDG---DASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEK 101 (193)
T ss_pred HHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCC---CHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHH
Confidence 455666667777778899999999999998776633 33567789999999999999999999999999888888999
Q ss_pred HHHHHHhcCCC--CcccHHHHHHHHHhhhcCC--------CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13766 83 VKKYSQQHKSD--ERISFEVFLPIYQAISKGR--------SADTADDFIEGLRHFDKDGNGFISSAELRHLLTT 146 (165)
Q Consensus 83 ~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~--------~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~ 146 (165)
+++.|..||.| |+|+++|++.++..+.... ...+++.+..+|+.+|.|+||.||++||......
T Consensus 102 l~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 102 LKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred hhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 99999999998 9999999999887554322 2335677888999999999999999999876653
No 11
>PTZ00184 calmodulin; Provisional
Probab=99.61 E-value=6e-14 Score=94.29 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=107.4
Q ss_pred HHhhhhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHH
Q psy13766 8 IMLKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRAL-GQNPTECDVKKY 86 (165)
Q Consensus 8 ~~~~~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l-~~~~~~~~~~~~ 86 (165)
...+...|.+++|.|++.+|..++..+.... ....+..+|..+|.+++|.|+.++|..++... ........+..+
T Consensus 14 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 89 (149)
T PTZ00184 14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEA 89 (149)
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHhCCCC----CHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3446778999999999999998876543221 14678999999999999999999999988764 334566778999
Q ss_pred HHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13766 87 SQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLT 145 (165)
Q Consensus 87 ~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~ 145 (165)
|..+|.+ |.|+.++|..++..+ ......+.+..+|+.+|.+++|.|+.++|..++.
T Consensus 90 F~~~D~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 90 FKVFDRDGNGFISAAELRHVMTNL---GEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHhhCCCCCCeEeHHHHHHHHHHH---CCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 9999987 999999999988763 2245678899999999999999999999988764
No 12
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.59 E-value=1.4e-13 Score=92.57 Aligned_cols=134 Identities=14% Similarity=0.182 Sum_probs=112.5
Q ss_pred hhhHHHhhhhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHH
Q psy13766 4 QRTEIMLKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRAL-GQNPTECD 82 (165)
Q Consensus 4 ~~~~~~~~~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l-~~~~~~~~ 82 (165)
|+-+..+ ...|++++|.|++.++..+++-+... ++...+..+|..+|. +.|.|+..+|..++... ....++++
T Consensus 20 ~~lkeaF-~l~D~d~~G~I~~~el~~ilr~lg~~----~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Ee 93 (160)
T COG5126 20 QELKEAF-QLFDRDSDGLIDRNELGKILRSLGFN----PSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEE 93 (160)
T ss_pred HHHHHHH-HHhCcCCCCCCcHHHHHHHHHHcCCC----CcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHH
Confidence 3344444 78899999999999999998644322 235788999999998 89999999999999875 46677999
Q ss_pred HHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13766 83 VKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTT 146 (165)
Q Consensus 83 ~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~ 146 (165)
+.+.|+.+|.+ |+|+..+++.++.. .....+.+.+..+++.+|++++|.|+.++|.+.+..
T Consensus 94 l~~aF~~fD~d~dG~Is~~eL~~vl~~---lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 94 LREAFKLFDKDHDGYISIGELRRVLKS---LGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHHHhCCCCCceecHHHHHHHHHh---hcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 99999999988 99999999998875 445677899999999999999999999999987653
No 13
>KOG0027|consensus
Probab=99.58 E-value=1.3e-13 Score=93.44 Aligned_cols=134 Identities=15% Similarity=0.191 Sum_probs=112.6
Q ss_pred hHHHhhhhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCC-----CH
Q psy13766 6 TEIMLKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNP-----TE 80 (165)
Q Consensus 6 ~~~~~~~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~-----~~ 80 (165)
.....+...|.+++|+|+-.++...++.+.... ...++..++..+|.+++|.|+..+|..++...+... +.
T Consensus 9 el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~----t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~ 84 (151)
T KOG0027|consen 9 ELKEAFQLFDKDGDGKISVEELGAVLRSLGQNP----TEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASS 84 (151)
T ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccH
Confidence 344456788999999999999998887665442 368999999999999999999999999998875543 34
Q ss_pred HHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13766 81 CDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTT 146 (165)
Q Consensus 81 ~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~ 146 (165)
.++++.|..+|.+ |.|+..++..++..+- .....+.+..+++..|.+++|.|++++|..++..
T Consensus 85 ~el~eaF~~fD~d~~G~Is~~el~~~l~~lg---~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFISASELKKVLTSLG---EKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHHHccCCCCcCcHHHHHHHHHHhC---CcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 5899999999998 9999999999998743 2455788999999999999999999999887753
No 14
>KOG0037|consensus
Probab=99.55 E-value=1.6e-13 Score=95.37 Aligned_cols=106 Identities=23% Similarity=0.268 Sum_probs=95.8
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHH
Q psy13766 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALG-QNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFI 121 (165)
Q Consensus 45 ~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~-~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~ 121 (165)
..+...|...|.|+.|.|+.+|++.+|.+.+ .+.+.+.++.++..+|.+ |+|.|.||..++..+ ..++
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i---------~~Wr 127 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI---------NQWR 127 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH---------HHHH
Confidence 4788999999999999999999999998764 568899999999999988 999999999999884 4599
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy13766 122 EGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEK 159 (165)
Q Consensus 122 ~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~~ 159 (165)
.+|+.+|.|++|+|+..||+++|..+|-.||++-.+.+
T Consensus 128 ~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~l 165 (221)
T KOG0037|consen 128 NVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLL 165 (221)
T ss_pred HHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHH
Confidence 99999999999999999999999999999998655443
No 15
>PLN02964 phosphatidylserine decarboxylase
Probab=99.53 E-value=2e-13 Score=109.88 Aligned_cols=114 Identities=21% Similarity=0.372 Sum_probs=96.1
Q ss_pred cchHHHHHHHh----cCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHH---HHHHHHhcCC
Q psy13766 21 KLQFSQVLFKM----YGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALG-QNPTECD---VKKYSQQHKS 92 (165)
Q Consensus 21 ~i~~~e~~~~~----~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~-~~~~~~~---~~~~~~~~d~ 92 (165)
++++++..... +.++..+ .++++.+|..+|+|++|.+ +..++..+| ..+++.+ ++.++..+|.
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~kq-----i~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~ 190 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVTQE-----PESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDY 190 (644)
T ss_pred CCCHHHhhhheeecHhhccHHH-----HHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence 44555544332 4567777 8999999999999999997 888999999 5888887 8999999998
Q ss_pred C--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13766 93 D--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTT 146 (165)
Q Consensus 93 ~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~ 146 (165)
+ |.|+|+||+.++..+. .....+++..+|+.+|++++|+|+.+||++++..
T Consensus 191 DgdG~IdfdEFl~lL~~lg---~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 191 DEDGQLSFSEFSDLIKAFG---NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCCCeEcHHHHHHHHHHhc---cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 8 9999999999998632 2456788999999999999999999999999988
No 16
>KOG0034|consensus
Probab=99.49 E-value=8e-13 Score=91.68 Aligned_cols=115 Identities=24% Similarity=0.442 Sum_probs=90.1
Q ss_pred CCccccccccHHHHHHHhhhhcCC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--Cc-ccHHHHHHHHHhhh
Q psy13766 34 YEPVNKVMTSIDEYLEAFQLFDNR-GDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ER-ISFEVFLPIYQAIS 109 (165)
Q Consensus 34 ~~~~~~~~~~~~~l~~~F~~~D~d-~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~-isf~eF~~~~~~~~ 109 (165)
++..+ +..++.+|.+++.+ ++|.++.++|..+. .+..++- ..+++..++.+ |. |+|++|+..+..++
T Consensus 27 fs~~E-----I~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np~---~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~ 97 (187)
T KOG0034|consen 27 FSANE-----IERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNPL---ADRIIDRFDTDGNGDPVDFEEFVRLLSVFS 97 (187)
T ss_pred cCHHH-----HHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCcH---HHHHHHHHhccCCCCccCHHHHHHHHhhhc
Confidence 77777 89999999999999 99999999999998 3333333 34556666554 55 99999999999865
Q ss_pred cCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-CCCCC--HHHHHHH
Q psy13766 110 KGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTL-GNFMS--WVNLVEK 159 (165)
Q Consensus 110 ~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~-~~~ls--~~e~~~~ 159 (165)
. .....+++..+|+.||.+++|+|+.+|+.+++..+ +...+ +++++.+
T Consensus 98 ~--~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 98 P--KASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred C--CccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 4 23334699999999999999999999999999986 44444 6655543
No 17
>KOG0036|consensus
Probab=99.48 E-value=1.4e-12 Score=98.22 Aligned_cols=108 Identities=18% Similarity=0.222 Sum_probs=99.2
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHH
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQN-PTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDF 120 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~-~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~ 120 (165)
...++.+|..+|.+++|.++..++.+.+.++..+ +.......++...|.| |.|+|.+|..++.. + +.++
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~--~------E~~l 84 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN--K------ELEL 84 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH--h------HHHH
Confidence 5788999999999999999999999999999877 7777788999999988 99999999999977 2 5678
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy13766 121 IEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEK 159 (165)
Q Consensus 121 ~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~~ 159 (165)
..+|..+|.+.||.|...|+++.++.+|.+|++++++.+
T Consensus 85 ~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~ 123 (463)
T KOG0036|consen 85 YRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKF 123 (463)
T ss_pred HHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHH
Confidence 999999999999999999999999999999999998874
No 18
>KOG0028|consensus
Probab=99.45 E-value=1e-11 Score=82.31 Aligned_cols=128 Identities=19% Similarity=0.282 Sum_probs=107.5
Q ss_pred hhhcCCCCCCcchHHHHHHHhcCC-CccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHH
Q psy13766 11 KSWCPTLKNSKLQFSQVLFKMYGY-EPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRA-LGQNPTECDVKKYSQ 88 (165)
Q Consensus 11 ~~~~d~~~~g~i~~~e~~~~~~~~-~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~-l~~~~~~~~~~~~~~ 88 (165)
....|++++|+|.+.|+...+.-+ -... ..++..+..-+|+++.|.|+.++|..+++. ++...+.+++...|.
T Consensus 39 f~lfd~~~~g~iD~~EL~vAmralGFE~~-----k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afr 113 (172)
T KOG0028|consen 39 FELFDPDMAGKIDVEELKVAMRALGFEPK-----KEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFR 113 (172)
T ss_pred HHhhccCCCCcccHHHHHHHHHHcCCCcc-----hHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 577789999999999996555322 2222 478888888889999999999999999764 577779999999999
Q ss_pred hcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13766 89 QHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTT 146 (165)
Q Consensus 89 ~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~ 146 (165)
.+|.+ |.||+.+|..++..+ .+....+++..+..-+|.+++|-|+.++|..+++.
T Consensus 114 l~D~D~~Gkis~~~lkrvakeL---genltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 114 LFDDDKTGKISQRNLKRVAKEL---GENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred cccccCCCCcCHHHHHHHHHHh---CccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 99887 999999999988774 34667789999999999999999999999988764
No 19
>KOG0034|consensus
Probab=99.32 E-value=1e-10 Score=81.23 Aligned_cols=126 Identities=15% Similarity=0.091 Sum_probs=97.6
Q ss_pred cCCC-CCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHHcCCCCCHH-HHHHHHHhc
Q psy13766 14 CPTL-KNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNK-IHVSQIGNVLRALGQNPTEC-DVKKYSQQH 90 (165)
Q Consensus 14 ~d~~-~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~-i~~~e~~~~l~~l~~~~~~~-~~~~~~~~~ 90 (165)
.+.. ++|.++.+||..+......+ -..+++..++.+++|. |+.++|...+...-..-+.. +++-.|..|
T Consensus 42 l~~~~~~g~lt~eef~~i~~~~~Np--------~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vY 113 (187)
T KOG0034|consen 42 LDRNNGDGYLTKEEFLSIPELALNP--------LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVY 113 (187)
T ss_pred hccccccCccCHHHHHHHHHHhcCc--------HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHh
Confidence 3444 88999999998887321111 2456777778888888 99999999999886665555 899999999
Q ss_pred CCC--CcccHHHHHHHHHhhhcCCCCCCH----HHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13766 91 KSD--ERISFEVFLPIYQAISKGRSADTA----DDFIEGLRHFDKDGNGFISSAELRHLLTTL 147 (165)
Q Consensus 91 d~~--g~isf~eF~~~~~~~~~~~~~~~~----~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~ 147 (165)
|.+ |.|+.+++..++..+......... .-+...|..+|.++||.|+++||..++..-
T Consensus 114 D~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 114 DLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred cCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 998 999999999999886653322112 235668999999999999999999988654
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.24 E-value=4.3e-11 Score=73.52 Aligned_cols=66 Identities=15% Similarity=0.297 Sum_probs=60.2
Q ss_pred cHHHHHHHhhhhcC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHHhcCCC--CcccHHHHHHHHHhh
Q psy13766 43 SIDEYLEAFQLFDN-RGDNKIHVSQIGNVLRA-LGQNPTE-CDVKKYSQQHKSD--ERISFEVFLPIYQAI 108 (165)
Q Consensus 43 ~~~~l~~~F~~~D~-d~~g~i~~~e~~~~l~~-l~~~~~~-~~~~~~~~~~d~~--g~isf~eF~~~~~~~ 108 (165)
++..+..+|+.||+ +++|+|+..||+.+++. +|..++. .+++.++..+|.| |.|+|+||+.++..+
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 36789999999999 99999999999999999 8877777 8999999999988 999999999988764
No 21
>KOG0751|consensus
Probab=99.24 E-value=1e-10 Score=90.13 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=118.8
Q ss_pred hhHHHhhhhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCC------C
Q psy13766 5 RTEIMLKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQN------P 78 (165)
Q Consensus 5 ~~~~~~~~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~------~ 78 (165)
.++..+.+..|..+||-|+|+||..+-.-+..+. .....+|+.||..++|.++.+++..++....++ +
T Consensus 74 ~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pD------al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~ 147 (694)
T KOG0751|consen 74 KIVRLLASIADQTKDGLISFQEFRAFESVLCAPD------ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNW 147 (694)
T ss_pred HHHHHHHhhhhhcccccccHHHHHHHHhhccCch------HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccC
Confidence 4567789999999999999999988876555554 567789999999999999999999999876543 4
Q ss_pred CHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHH
Q psy13766 79 TECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNL 156 (165)
Q Consensus 79 ~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~ 156 (165)
+.+.|+..|. .+ .-++|.+|.+++..+.. +....+|+..|+.++|+||.-+|+.++.....++....+
T Consensus 148 d~efI~~~Fg---~~~~r~~ny~~f~Q~lh~~~~-------E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v 217 (694)
T KOG0751|consen 148 DSEFIKLHFG---DIRKRHLNYAEFTQFLHEFQL-------EHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFV 217 (694)
T ss_pred CcchHHHHhh---hHHHHhccHHHHHHHHHHHHH-------HHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHH
Confidence 4555555442 22 56999999999988653 568899999999999999999999999999999999999
Q ss_pred HHHHHhh
Q psy13766 157 VEKEVIW 163 (165)
Q Consensus 157 ~~~~~~~ 163 (165)
++..++.
T Consensus 218 ~~nlv~v 224 (694)
T KOG0751|consen 218 EENLVSV 224 (694)
T ss_pred hhhhhhh
Confidence 9888764
No 22
>KOG0044|consensus
Probab=99.24 E-value=1.8e-10 Score=80.15 Aligned_cols=112 Identities=13% Similarity=0.269 Sum_probs=88.5
Q ss_pred HHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCC--CcccHHHHH
Q psy13766 26 QVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQ-NPTECDVKKYSQQHKSD--ERISFEVFL 102 (165)
Q Consensus 26 e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~-~~~~~~~~~~~~~~d~~--g~isf~eF~ 102 (165)
+.+...+++++.+ ++.+++-|..- -.+|.++.++|+.++..... .-+......+|..+|.+ |.|+|.||+
T Consensus 15 e~l~~~t~f~~~e-----i~~~Yr~Fk~~--cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi 87 (193)
T KOG0044|consen 15 EQLVQQTKFSKKE-----IQQWYRGFKNE--CPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFI 87 (193)
T ss_pred HHHHHhcCCCHHH-----HHHHHHHhccc--CCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHH
Confidence 3334445566666 66666666542 24899999999999999876 44555677888899988 999999999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13766 103 PIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTL 147 (165)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~ 147 (165)
..+....+ ....+.+..+|+.||.+++|+|+.+|+..+++++
T Consensus 88 ~als~~~r---Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 88 CALSLTSR---GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred HHHHHHcC---CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 88887554 5667889999999999999999999999988876
No 23
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.23 E-value=5.7e-11 Score=69.12 Aligned_cols=59 Identities=31% Similarity=0.547 Sum_probs=43.8
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHH----HHHHHhcCCC--CcccHHHHHHH
Q psy13766 46 EYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDV----KKYSQQHKSD--ERISFEVFLPI 104 (165)
Q Consensus 46 ~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~----~~~~~~~d~~--g~isf~eF~~~ 104 (165)
.++.+|+.+|.+++|+|+.+|+..++..++...+...+ +.++..+|.+ |.|+|+||..+
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 37889999999999999999999999999877664333 3335555555 66666666554
No 24
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.18 E-value=2.1e-10 Score=70.47 Aligned_cols=65 Identities=18% Similarity=0.366 Sum_probs=59.8
Q ss_pred cHHHHHHHhhhhc-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHh
Q psy13766 43 SIDEYLEAFQLFD-NRGDN-KIHVSQIGNVLRA-----LGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQA 107 (165)
Q Consensus 43 ~~~~l~~~F~~~D-~d~~g-~i~~~e~~~~l~~-----l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~ 107 (165)
++..+..+|..|| .+++| .|+..+++.+|+. +|..+++.+++.++..+|.| |.|+|++|+.++..
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3678999999998 79999 6999999999999 89999999999999999988 99999999988866
No 25
>KOG0036|consensus
Probab=99.12 E-value=4.6e-09 Score=79.56 Aligned_cols=88 Identities=22% Similarity=0.250 Sum_probs=50.2
Q ss_pred HhhhhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy13766 9 MLKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQ 88 (165)
Q Consensus 9 ~~~~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~ 88 (165)
.+++.+|.+.+|.++|++|.+++.. . ..++..+|+.+|.+.||.|+..|+...+..+|..++..++.+++.
T Consensus 55 ~l~~~~d~~~dg~vDy~eF~~Y~~~----~-----E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e 125 (463)
T KOG0036|consen 55 MLFSAMDANRDGRVDYSEFKRYLDN----K-----ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFE 125 (463)
T ss_pred HHHHhcccCcCCcccHHHHHHHHHH----h-----HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHH
Confidence 3455556666666666666555531 0 245555666666666666666666666666666666666666555
Q ss_pred hcCCC--CcccHHHHHHHH
Q psy13766 89 QHKSD--ERISFEVFLPIY 105 (165)
Q Consensus 89 ~~d~~--g~isf~eF~~~~ 105 (165)
..|.+ +.|+++||..++
T Consensus 126 ~~d~~g~~~I~~~e~rd~~ 144 (463)
T KOG0036|consen 126 HMDKDGKATIDLEEWRDHL 144 (463)
T ss_pred HhccCCCeeeccHHHHhhh
Confidence 55555 555666655554
No 26
>KOG2643|consensus
Probab=99.10 E-value=5.1e-10 Score=85.13 Aligned_cols=121 Identities=19% Similarity=0.333 Sum_probs=92.9
Q ss_pred cCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHc------CC----------C
Q psy13766 14 CPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRAL------GQ----------N 77 (165)
Q Consensus 14 ~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l------~~----------~ 77 (165)
++-+.+|-|+|.||+.+++-++.++ ....-+|+.||.|+||.|+++||..+.+-+ |. .
T Consensus 208 ~~lg~~GLIsfSdYiFLlTlLS~p~------~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s 281 (489)
T KOG2643|consen 208 YKLGESGLISFSDYIFLLTLLSIPE------RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNS 281 (489)
T ss_pred EEcCCCCeeeHHHHHHHHHHHccCc------ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccce
Confidence 3446789999999999999999887 678899999999999999999999887532 11 0
Q ss_pred CC---HHHHHHHHHhcCCCCcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13766 78 PT---ECDVKKYSQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTL 147 (165)
Q Consensus 78 ~~---~~~~~~~~~~~d~~g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~ 147 (165)
.. ..-+...|--.+.++++++++|+.++..+.. +-++.-|..+|+..+|.|+..+|..++-..
T Consensus 282 ~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~Lq~-------Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~ 347 (489)
T KOG2643|consen 282 FKVEVNSALLTYFFGKRGNGKLSIDEFLKFQENLQE-------EILELEFERFDKGDSGAISEVDFAELLLAY 347 (489)
T ss_pred ehhhhhhhHHHHhhccCCCccccHHHHHHHHHHHHH-------HHHHHHHHHhCcccccccCHHHHHHHHHHH
Confidence 00 1112222222233389999999999998653 667778999999999999999999887654
No 27
>KOG4223|consensus
Probab=99.08 E-value=9.4e-10 Score=80.85 Aligned_cols=136 Identities=15% Similarity=0.162 Sum_probs=96.4
Q ss_pred hhcCCCCCCcchHHHHHHHhcCC-------Cccccc---cccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCC-CCCH
Q psy13766 12 SWCPTLKNSKLQFSQVLFKMYGY-------EPVNKV---MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQ-NPTE 80 (165)
Q Consensus 12 ~~~d~~~~g~i~~~e~~~~~~~~-------~~~~~~---~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~-~~~~ 80 (165)
..+|.+.+|.|+++++...+... ...... ..-+..-...|++-|.|++|.++.+||...|+.-.. .+..
T Consensus 120 ~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~ 199 (325)
T KOG4223|consen 120 DEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKD 199 (325)
T ss_pred HHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHH
Confidence 56788899999999998876531 111100 000123457899999999999999999999987643 3556
Q ss_pred HHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCH--HHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13766 81 CDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTA--DDFIEGLRHFDKDGNGFISSAELRHLLTTL 147 (165)
Q Consensus 81 ~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~--~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~ 147 (165)
-.+.+-+...|+| |.|+++||+.-+.......+.+.+ .+-...+..+|+|++|+|+-+|+++++.--
T Consensus 200 iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~ 270 (325)
T KOG4223|consen 200 IVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPS 270 (325)
T ss_pred HHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCC
Confidence 6678888889998 999999999877552221111111 123456788999999999999999877443
No 28
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.08 E-value=9.3e-10 Score=68.85 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=57.4
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhh
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAI 108 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~ 108 (165)
...++.+|..+|.+++|.|+.++++.+++.++ ++..++..++..+|.+ |.|+|++|+.++...
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 78899999999999999999999999999865 6788999999999887 999999999988764
No 29
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.04 E-value=2e-09 Score=66.85 Aligned_cols=65 Identities=17% Similarity=0.417 Sum_probs=56.9
Q ss_pred HHHHHHHhhhhc-CCCCC-cccHHHHHHHHHH-cC----CCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhh
Q psy13766 44 IDEYLEAFQLFD-NRGDN-KIHVSQIGNVLRA-LG----QNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAI 108 (165)
Q Consensus 44 ~~~l~~~F~~~D-~d~~g-~i~~~e~~~~l~~-l~----~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~ 108 (165)
...+..+|..|| .+++| .|+..+++.+|+. +| ..++..+++.++..+|.+ |.|+|++|+.++..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 568999999997 99999 5999999999986 44 457889999999999987 899999999988763
No 30
>KOG4223|consensus
Probab=99.02 E-value=2.3e-09 Score=78.81 Aligned_cols=136 Identities=15% Similarity=0.086 Sum_probs=100.9
Q ss_pred hhhhhHHHhhhhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHc-------
Q psy13766 2 EEQRTEIMLKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRAL------- 74 (165)
Q Consensus 2 ~~~~~~~~~~~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l------- 74 (165)
+.+++...+.+.+|.+++|-|+-.|...++..-.+.. ........|..+|.+.+|.|+.++....+...
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~----v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~ 149 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKY----VVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEF 149 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHH----HHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCcccc
Confidence 3567777888999999999999999999986544443 13566778889999999999999998877642
Q ss_pred -CCCCCHHH------HHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q psy13766 75 -GQNPTECD------VKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHL 143 (165)
Q Consensus 75 -~~~~~~~~------~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~ 143 (165)
........ -++.|+..|.| |.++.+||.+++.. ...+....-.+.....-+|+|++|+|+++||-.=
T Consensus 150 ~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHP--Ee~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd 225 (325)
T KOG4223|consen 150 PDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHP--EEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGD 225 (325)
T ss_pred ccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccCh--hhcchHHHHHHHHHHhhcccCCCCceeHHHHHhH
Confidence 11111111 24556677777 99999999999965 2222333456788899999999999999998653
No 31
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.01 E-value=3.2e-09 Score=66.02 Aligned_cols=65 Identities=18% Similarity=0.387 Sum_probs=55.6
Q ss_pred HHHHHHHhhhhc-CCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhh
Q psy13766 44 IDEYLEAFQLFD-NRGDN-KIHVSQIGNVLRAL-----GQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAI 108 (165)
Q Consensus 44 ~~~l~~~F~~~D-~d~~g-~i~~~e~~~~l~~l-----~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~ 108 (165)
+..+..+|..|| .|++| +|+..||+.++... +...+..+++.++..+|.+ |.|+|+||+.++..+
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 567788899999 78998 59999999999762 3445788999999999988 999999999988774
No 32
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.00 E-value=2.7e-09 Score=66.48 Aligned_cols=64 Identities=14% Similarity=0.385 Sum_probs=56.9
Q ss_pred HHHHHHHhhhhcC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHh
Q psy13766 44 IDEYLEAFQLFDN-RG-DNKIHVSQIGNVLRA-----LGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQA 107 (165)
Q Consensus 44 ~~~l~~~F~~~D~-d~-~g~i~~~e~~~~l~~-----l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~ 107 (165)
...++.+|..||. ++ +|.|+..|++.++.. +|..++..+++.++..+|.+ |.|+|++|+.++..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4678999999997 87 699999999999986 56788999999999999887 89999999988865
No 33
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.99 E-value=4.5e-09 Score=64.56 Aligned_cols=65 Identities=12% Similarity=0.430 Sum_probs=57.7
Q ss_pred HHHHHHHhhhhcC-CC-CCcccHHHHHHHHHH---cCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhh
Q psy13766 44 IDEYLEAFQLFDN-RG-DNKIHVSQIGNVLRA---LGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAI 108 (165)
Q Consensus 44 ~~~l~~~F~~~D~-d~-~g~i~~~e~~~~l~~---l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~ 108 (165)
+..+-.+|.+||. ++ +|+|+..||+.+++. +|..++..++.+++..+|.+ |.|+|++|+.++..+
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4677889999997 67 899999999999973 68889999999999999988 999999999988764
No 34
>KOG0041|consensus
Probab=98.98 E-value=9.8e-09 Score=70.78 Aligned_cols=120 Identities=17% Similarity=0.299 Sum_probs=95.0
Q ss_pred HHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHH
Q psy13766 24 FSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVF 101 (165)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF 101 (165)
|.+|. .++..+ ++.+..+|+.||.+.||+|+..|++.++.++|-+-+.--++.++..+|.| |++||.+|
T Consensus 87 yteF~----eFsrkq-----Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfref 157 (244)
T KOG0041|consen 87 YTEFS----EFSRKQ-----IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREF 157 (244)
T ss_pred hhhhh----HHHHHH-----HHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHH
Confidence 55554 345566 88999999999999999999999999999999999999999999999988 99999999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHh--hCCCCCCcccHHHHHHHHHHhCCCCCH
Q psy13766 102 LPIYQAISKGRSADTADDFIEGLRH--FDKDGNGFISSAELRHLLTTLGNFMSW 153 (165)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~f~~--~D~~~~G~i~~~e~~~~l~~~~~~ls~ 153 (165)
+-++....... ......+..+-+. .|....|......|.++-.....+++.
T Consensus 158 lLIfrkaaagE-L~~ds~~~~LAr~~eVDVskeGV~GAknFFeAKI~~qs~~s~ 210 (244)
T KOG0041|consen 158 LLIFRKAAAGE-LQEDSGLLRLARLSEVDVSKEGVSGAKNFFEAKIEAQSPLSR 210 (244)
T ss_pred HHHHHHHhccc-cccchHHHHHHHhcccchhhhhhhhHHHHHHHHHHhhCCCCc
Confidence 98887654422 2223334444344 899999999999998877666555543
No 35
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.95 E-value=4.1e-09 Score=61.22 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=52.0
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHh
Q psy13766 48 LEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQA 107 (165)
Q Consensus 48 ~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~ 107 (165)
+.+|..+|++++|.|+..|+..++..+|. +...+..++..++.+ |.|+|++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 46899999999999999999999998875 788899999999887 89999999988865
No 36
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.92 E-value=5.9e-09 Score=64.11 Aligned_cols=64 Identities=14% Similarity=0.327 Sum_probs=56.3
Q ss_pred HHHHHHHhhhhcC--CCCCcccHHHHHHHHHH-cCCC----CCHHHHHHHHHhcCCC--CcccHHHHHHHHHh
Q psy13766 44 IDEYLEAFQLFDN--RGDNKIHVSQIGNVLRA-LGQN----PTECDVKKYSQQHKSD--ERISFEVFLPIYQA 107 (165)
Q Consensus 44 ~~~l~~~F~~~D~--d~~g~i~~~e~~~~l~~-l~~~----~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~ 107 (165)
++.++.+|..||. +++|.|+..++..+++. +|.. ++..++..++..+|.+ |.|+|++|+.++..
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 6789999999999 89999999999999986 4543 4588999999999887 99999999998876
No 37
>KOG0030|consensus
Probab=98.92 E-value=5.5e-09 Score=67.92 Aligned_cols=85 Identities=24% Similarity=0.416 Sum_probs=71.7
Q ss_pred CcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCCcccH
Q psy13766 20 SKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQH-KSDERISF 98 (165)
Q Consensus 20 g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~-d~~g~isf 98 (165)
..++|++|+.++.++++. +.+...+.+....+.||++++|+|...+++++|..+|-.+++.++..++... |.+|.|+|
T Consensus 64 ~rl~FE~fLpm~q~vakn-k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~eD~nG~i~Y 142 (152)
T KOG0030|consen 64 KRLDFEEFLPMYQQVAKN-KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQEDSNGCINY 142 (152)
T ss_pred hhhhHHHHHHHHHHHHhc-cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccccccCCcCcH
Confidence 578999999888777654 2333456777888999999999999999999999999999999999999876 44499999
Q ss_pred HHHHHHH
Q psy13766 99 EVFLPIY 105 (165)
Q Consensus 99 ~eF~~~~ 105 (165)
+.|+.-+
T Consensus 143 E~fVk~i 149 (152)
T KOG0030|consen 143 EAFVKHI 149 (152)
T ss_pred HHHHHHH
Confidence 9998754
No 38
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.89 E-value=9.6e-09 Score=57.24 Aligned_cols=50 Identities=28% Similarity=0.442 Sum_probs=42.1
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCC--CcccHHHHHHHHHh
Q psy13766 58 GDNKIHVSQIGNVLRALGQN-PTECDVKKYSQQHKSD--ERISFEVFLPIYQA 107 (165)
Q Consensus 58 ~~g~i~~~e~~~~l~~l~~~-~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~ 107 (165)
.+|.|+.++|+.+++.+|.. ++..++..++..+|.+ |.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 36888888998888888888 8888888888888887 88888888887754
No 39
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.86 E-value=2e-08 Score=56.80 Aligned_cols=59 Identities=32% Similarity=0.613 Sum_probs=51.7
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHH
Q psy13766 47 YLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIY 105 (165)
Q Consensus 47 l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~ 105 (165)
+..+|..+|.+++|.|+..++..++..++...+...+..++..++.+ |.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56778889999999999999999999999999999999999998876 889999988754
No 40
>PF14658 EF-hand_9: EF-hand domain
Probab=98.83 E-value=2e-08 Score=57.46 Aligned_cols=59 Identities=25% Similarity=0.518 Sum_probs=54.9
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCC---CcccHHHHHHHHHh
Q psy13766 49 EAFQLFDNRGDNKIHVSQIGNVLRALGQ-NPTECDVKKYSQQHKSD---ERISFEVFLPIYQA 107 (165)
Q Consensus 49 ~~F~~~D~d~~g~i~~~e~~~~l~~l~~-~~~~~~~~~~~~~~d~~---g~isf~eF~~~~~~ 107 (165)
.+|..||.++.|.|...++..+|++++. .+.+.+++.+...+|++ |.|+|+.|+.+|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3689999999999999999999999988 89999999999999988 78999999998865
No 41
>KOG0031|consensus
Probab=98.83 E-value=4.4e-08 Score=64.87 Aligned_cols=66 Identities=23% Similarity=0.402 Sum_probs=59.9
Q ss_pred ccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHh
Q psy13766 42 TSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQA 107 (165)
Q Consensus 42 ~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~ 107 (165)
++.+.+..+|+.||.+++|.|....++.+|...|-.++.++++.++..+..+ |.++|..|+..+.+
T Consensus 98 dpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 98 DPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred CHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 3357889999999999999999999999999999999999999999999776 99999999988865
No 42
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.82 E-value=6.5e-09 Score=60.35 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCC--CcccHHHHHHHHHhhhcCC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy13766 82 DVKKYSQQHKSD--ERISFEVFLPIYQAISKGR-SADTADDFIEGLRHFDKDGNGFISSAELRHLL 144 (165)
Q Consensus 82 ~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l 144 (165)
.++.+|..+|.+ |.|+.+||..++..+.... .....+.+..+|+.+|++++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 367899999988 9999999999998743211 11123456777999999999999999998864
No 43
>KOG0377|consensus
Probab=98.81 E-value=8.8e-08 Score=73.41 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=85.9
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCCcccHHHHHHHHHhhhcCCCCC--------
Q psy13766 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRAL-GQNPTECDVKKYSQQHKSDERISFEVFLPIYQAISKGRSAD-------- 115 (165)
Q Consensus 45 ~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l-~~~~~~~~~~~~~~~~d~~g~isf~eF~~~~~~~~~~~~~~-------- 115 (165)
..+...|+++|++++|+|+...+..++..+ |+.++..-+..-+...+.+|.|.|.+.+..+..-....+..
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLY 543 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLY 543 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHH
Confidence 467788999999999999999999999875 88888766666555555458888888877664310000000
Q ss_pred -CHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHH
Q psy13766 116 -TADDFIEGLRHFDKDGNGFISSAELRHLLTTL----GNFMSWVNLVEKE 160 (165)
Q Consensus 116 -~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~----~~~ls~~e~~~~~ 160 (165)
....+..+|+.+|.|++|.|+++||+++++-+ ..+++++++-++.
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la 593 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELA 593 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHH
Confidence 01347889999999999999999999988765 4567888877664
No 44
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.78 E-value=7.3e-08 Score=59.31 Aligned_cols=65 Identities=12% Similarity=0.292 Sum_probs=54.7
Q ss_pred HHHHHHHhhh-hcCCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhh
Q psy13766 44 IDEYLEAFQL-FDNRGDN-KIHVSQIGNVLRAL-----GQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAI 108 (165)
Q Consensus 44 ~~~l~~~F~~-~D~d~~g-~i~~~e~~~~l~~l-----~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~ 108 (165)
+..|..+|.. +|.+++| .|+..||+.++... +......+++.++..+|.| |.|+|+||+.++..+
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5788899998 6677876 99999999999875 3356678899999999888 999999999888764
No 45
>KOG0040|consensus
Probab=98.77 E-value=5.4e-08 Score=83.45 Aligned_cols=105 Identities=15% Similarity=0.335 Sum_probs=88.0
Q ss_pred cCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCC-------CHHHHHHHHHhcCCC--CcccHHHHH
Q psy13766 32 YGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNP-------TECDVKKYSQQHKSD--ERISFEVFL 102 (165)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~-------~~~~~~~~~~~~d~~--g~isf~eF~ 102 (165)
.+++.+. ..++..+|+.||.+.+|+++..+|+.||+.+|+.+ +++++++++..+|++ |+|+..+|.
T Consensus 2245 ~GVtEe~-----L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~ 2319 (2399)
T KOG0040|consen 2245 NGVTEEQ-----LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYM 2319 (2399)
T ss_pred CCCCHHH-----HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHH
Confidence 3466676 78999999999999999999999999999999875 345899999999999 999999999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q psy13766 103 PIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHL 143 (165)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~ 143 (165)
++|..-. +......+.+..+|+..|. +..+|+.+++.+.
T Consensus 2320 afmi~~E-TeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~ 2358 (2399)
T KOG0040|consen 2320 AFMISKE-TENILSSEEIEDAFRALDA-GKPYVTKEELYQN 2358 (2399)
T ss_pred HHHHhcc-cccccchHHHHHHHHHhhc-CCccccHHHHHhc
Confidence 9997622 2234456789999999998 8889998888543
No 46
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.73 E-value=2.1e-08 Score=48.37 Aligned_cols=29 Identities=38% Similarity=0.755 Sum_probs=26.3
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13766 119 DFIEGLRHFDKDGNGFISSAELRHLLTTL 147 (165)
Q Consensus 119 ~~~~~f~~~D~~~~G~i~~~e~~~~l~~~ 147 (165)
++..+|+.+|+|++|+|+.+||+.+++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 36789999999999999999999999864
No 47
>KOG2643|consensus
Probab=98.72 E-value=3.4e-08 Score=75.38 Aligned_cols=127 Identities=18% Similarity=0.224 Sum_probs=89.7
Q ss_pred hcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCC--HHHHHHHHHh
Q psy13766 13 WCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRAL-GQNPT--ECDVKKYSQQ 89 (165)
Q Consensus 13 ~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l-~~~~~--~~~~~~~~~~ 89 (165)
+.=.+++|++++++|..++.++..+ -+..-|..+|+..+|.|+..+|..++-.. +.+.. ...++++-..
T Consensus 294 FFG~rg~~kLs~deF~~F~e~Lq~E--------il~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~k 365 (489)
T KOG2643|consen 294 FFGKRGNGKLSIDEFLKFQENLQEE--------ILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEK 365 (489)
T ss_pred hhccCCCccccHHHHHHHHHHHHHH--------HHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHh
Confidence 3345788999999999998754333 35566999999999999999999987655 33322 2235666666
Q ss_pred cCCC-CcccHHHHHHHHHhhhcC-------------CCCCC-----------------HHHHHHHHHhhCCCCCCcccHH
Q psy13766 90 HKSD-ERISFEVFLPIYQAISKG-------------RSADT-----------------ADDFIEGLRHFDKDGNGFISSA 138 (165)
Q Consensus 90 ~d~~-g~isf~eF~~~~~~~~~~-------------~~~~~-----------------~~~~~~~f~~~D~~~~G~i~~~ 138 (165)
++.. -.||++||..+...+... ..... ...+.-+|..||.|+||.|+.+
T Consensus 366 f~~~~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~ 445 (489)
T KOG2643|consen 366 FKDDGKGISLQEFKAFFRFLNNLNDFDIALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHK 445 (489)
T ss_pred ccCCCCCcCHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHH
Confidence 6654 569999998877643221 11111 1123446999999999999999
Q ss_pred HHHHHHHHh
Q psy13766 139 ELRHLLTTL 147 (165)
Q Consensus 139 e~~~~l~~~ 147 (165)
||..+++.-
T Consensus 446 EFl~Vmk~R 454 (489)
T KOG2643|consen 446 EFLAVMKRR 454 (489)
T ss_pred HHHHHHHHH
Confidence 999999754
No 48
>KOG2562|consensus
Probab=98.64 E-value=3e-07 Score=70.85 Aligned_cols=130 Identities=18% Similarity=0.219 Sum_probs=89.8
Q ss_pred hhcCCCCCCcchHHHHHH-----HhcCCCccccccc-----c---HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCC
Q psy13766 12 SWCPTLKNSKLQFSQVLF-----KMYGYEPVNKVMT-----S---IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNP 78 (165)
Q Consensus 12 ~~~d~~~~g~i~~~e~~~-----~~~~~~~~~~~~~-----~---~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~ 78 (165)
=.+++-++|.|+..+... .+..+..++-..+ + -..+..-|..+|+|.+|.|+.++++..- ...+
T Consensus 232 y~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~---d~tl 308 (493)
T KOG2562|consen 232 YYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYG---DHTL 308 (493)
T ss_pred eeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHh---ccch
Confidence 356777889888766542 2222211110000 0 1233444888899999999999998765 3346
Q ss_pred CHHHHHHHHHhcCCC------CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13766 79 TECDVKKYSQQHKSD------ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTL 147 (165)
Q Consensus 79 ~~~~~~~~~~~~d~~------g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~ 147 (165)
+...++++|..+..+ |+++|++|+.++-.... ......++..|+.+|.+++|.|+..|++-+....
T Consensus 309 t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~---k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq 380 (493)
T KOG2562|consen 309 TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED---KDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQ 380 (493)
T ss_pred hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc---CCCccchhhheeeeeccCCCcccHHHHHHHHHHH
Confidence 678889999843222 99999999999877433 3344679999999999999999999998777554
No 49
>PLN02964 phosphatidylserine decarboxylase
Probab=98.63 E-value=4.9e-07 Score=73.54 Aligned_cols=93 Identities=10% Similarity=0.160 Sum_probs=75.1
Q ss_pred hhhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy13766 11 KSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQH 90 (165)
Q Consensus 11 ~~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~ 90 (165)
+...|++++|.+ .......+....+.+ .....+..+|..+|.+++|.|+..||..++..++...+++++..+|..+
T Consensus 149 F~lfD~dgdG~i-Lg~ilrslG~~~pte---~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~f 224 (644)
T PLN02964 149 FDLLDPSSSNKV-VGSIFVSCSIEDPVE---TERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAA 224 (644)
T ss_pred HHHHCCCCCCcC-HHHHHHHhCCCCCCH---HHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHh
Confidence 578899999997 444444443223332 0023488999999999999999999999999998888999999999999
Q ss_pred CCC--CcccHHHHHHHHHh
Q psy13766 91 KSD--ERISFEVFLPIYQA 107 (165)
Q Consensus 91 d~~--g~isf~eF~~~~~~ 107 (165)
|.+ |.|+++||..++..
T Consensus 225 DkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 225 DLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCCCCCcCCHHHHHHHHHh
Confidence 988 99999999998876
No 50
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.63 E-value=2.3e-07 Score=57.01 Aligned_cols=65 Identities=15% Similarity=0.312 Sum_probs=54.8
Q ss_pred HHHHHHHhhhhcCC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHHHhcCCC--CcccHHHHHHHHHhh
Q psy13766 44 IDEYLEAFQLFDNR--GDNKIHVSQIGNVLR-ALGQNPT----ECDVKKYSQQHKSD--ERISFEVFLPIYQAI 108 (165)
Q Consensus 44 ~~~l~~~F~~~D~d--~~g~i~~~e~~~~l~-~l~~~~~----~~~~~~~~~~~d~~--g~isf~eF~~~~~~~ 108 (165)
+..+..+|..|+.. .+|.|+..||+.++. .++..++ ..+++.++..+|.+ |.|+|++|+.++..+
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 56788899999865 478999999999997 4555565 88999999999887 999999999888763
No 51
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.61 E-value=2.7e-07 Score=59.47 Aligned_cols=58 Identities=19% Similarity=0.262 Sum_probs=42.3
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHH
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIY 105 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~ 105 (165)
...+.-.|..+|.|++|.|+.+|+..+. ....+..+..++..+|.| |.||++||..++
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4567777888888888888888888655 334456667777777766 777777777766
No 52
>KOG0038|consensus
Probab=98.54 E-value=1.2e-06 Score=57.69 Aligned_cols=131 Identities=18% Similarity=0.176 Sum_probs=83.1
Q ss_pred CcchHHHHHHH--hcCCCccccccccHHHHHHHhhhhcCCC-----------CCcccHHHHHHHHHHcCCCCCHHHHHHH
Q psy13766 20 SKLQFSQVLFK--MYGYEPVNKVMTSIDEYLEAFQLFDNRG-----------DNKIHVSQIGNVLRALGQNPTECDVKKY 86 (165)
Q Consensus 20 g~i~~~e~~~~--~~~~~~~~~~~~~~~~l~~~F~~~D~d~-----------~g~i~~~e~~~~l~~l~~~~~~~~~~~~ 86 (165)
+..|.+++-.+ ++-++..+ +-.+...|..+.++- .-+++.+.+.+. ..+..++-...|.++
T Consensus 6 ~vFT~eqLd~YQDCTFFtrKd-----Ilrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kM-PELkenpfk~ri~e~ 79 (189)
T KOG0038|consen 6 TVFTEEQLDEYQDCTFFTRKD-----ILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKM-PELKENPFKRRICEV 79 (189)
T ss_pred ceeeHHHHhhhcccccccHHH-----HHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhC-hhhhcChHHHHHHHH
Confidence 33444443332 23345555 566666676665421 124555544442 233344444444444
Q ss_pred HHhcCCCCcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHH
Q psy13766 87 SQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG-NFMSWVNLVEK 159 (165)
Q Consensus 87 ~~~~d~~g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~-~~ls~~e~~~~ 159 (165)
|+. |..|.++|++|+..+..++. ..+..-++..+|+++|.|++++|..+++...+.++. ..||++|++.+
T Consensus 80 FSe-DG~GnlsfddFlDmfSV~sE--~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i 150 (189)
T KOG0038|consen 80 FSE-DGRGNLSFDDFLDMFSVFSE--MAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELI 150 (189)
T ss_pred hcc-CCCCcccHHHHHHHHHHHHh--hChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHH
Confidence 432 22299999999999988553 234445678899999999999999999999999985 46999887654
No 53
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.52 E-value=1.8e-07 Score=45.93 Aligned_cols=30 Identities=50% Similarity=0.896 Sum_probs=26.3
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH-HhC
Q psy13766 119 DFIEGLRHFDKDGNGFISSAELRHLLT-TLG 148 (165)
Q Consensus 119 ~~~~~f~~~D~~~~G~i~~~e~~~~l~-~~~ 148 (165)
++..+|+.+|.+++|+|+.+||+.+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367899999999999999999999999 675
No 54
>KOG0038|consensus
Probab=98.51 E-value=5.3e-07 Score=59.33 Aligned_cols=91 Identities=19% Similarity=0.238 Sum_probs=51.1
Q ss_pred hcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHHH----HHHH
Q psy13766 13 WCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALG-QNPTECDV----KKYS 87 (165)
Q Consensus 13 ~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~-~~~~~~~~----~~~~ 87 (165)
+...+|.|.+++++|+..+.-++..- |..-++..+|+.||-|+++.|...++.+.++.+- -.++..++ ++++
T Consensus 79 ~FSeDG~GnlsfddFlDmfSV~sE~A---PrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvi 155 (189)
T KOG0038|consen 79 VFSEDGRGNLSFDDFLDMFSVFSEMA---PRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVI 155 (189)
T ss_pred HhccCCCCcccHHHHHHHHHHHHhhC---hHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 33556677777777766654333221 1134455667777777777777777777776653 23454443 3333
Q ss_pred HhcCCC--CcccHHHHHHHHH
Q psy13766 88 QQHKSD--ERISFEVFLPIYQ 106 (165)
Q Consensus 88 ~~~d~~--g~isf~eF~~~~~ 106 (165)
...|.+ |+++|.+|-..+.
T Consensus 156 eEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 156 EEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHhcCCCCCcccHHHHHHHHH
Confidence 444444 5666666655443
No 55
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.48 E-value=3e-07 Score=44.30 Aligned_cols=29 Identities=38% Similarity=0.669 Sum_probs=25.4
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHc
Q psy13766 46 EYLEAFQLFDNRGDNKIHVSQIGNVLRAL 74 (165)
Q Consensus 46 ~l~~~F~~~D~d~~g~i~~~e~~~~l~~l 74 (165)
+++.+|+.+|+|++|+|+.+||..+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46789999999999999999999998764
No 56
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.45 E-value=9.2e-07 Score=49.09 Aligned_cols=50 Identities=24% Similarity=0.396 Sum_probs=43.1
Q ss_pred CcccHHHHHHHHHhhhcCCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13766 94 ERISFEVFLPIYQAISKGRSA-DTADDFIEGLRHFDKDGNGFISSAELRHLLTT 146 (165)
Q Consensus 94 g~isf~eF~~~~~~~~~~~~~-~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~ 146 (165)
|.|+.++|..++..+ ... ...+++..+|..+|.+++|.|+.+||..++..
T Consensus 3 G~i~~~~~~~~l~~~---g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKITREEFRRALSKL---GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEEHHHHHHHHHHT---TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHh---CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 889999999999552 223 67788999999999999999999999998864
No 57
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.43 E-value=1.4e-06 Score=53.58 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=53.0
Q ss_pred HHHHHHHhcCC-C--CcccHHHHHHHHHhhhcCCCCCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q psy13766 82 DVKKYSQQHKS-D--ERISFEVFLPIYQAISKGRSADTA-DDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148 (165)
Q Consensus 82 ~~~~~~~~~d~-~--g~isf~eF~~~~~~~~~~~~~~~~-~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~ 148 (165)
.+...|..||. + |+|+..|+..++..-.. ..... +.+..+++..|.|++|.|+++||..++..+.
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg--~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLP--HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh--hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 46778899998 5 99999999999977211 12233 7899999999999999999999999998774
No 58
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.39 E-value=3e-06 Score=47.56 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=49.6
Q ss_pred HHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy13766 83 VKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLL 144 (165)
Q Consensus 83 ~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l 144 (165)
+..+|..+|.+ |.|++++|..++..+. .....+.+..+|..+|.+++|.|+.++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG---EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 46778888887 9999999999987742 35567788999999999999999999998765
No 59
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.35 E-value=9.7e-07 Score=43.24 Aligned_cols=30 Identities=40% Similarity=0.750 Sum_probs=26.2
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHH-HcC
Q psy13766 46 EYLEAFQLFDNRGDNKIHVSQIGNVLR-ALG 75 (165)
Q Consensus 46 ~l~~~F~~~D~d~~g~i~~~e~~~~l~-~l~ 75 (165)
+++.+|..+|.|++|.|+.+||+.+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 565
No 60
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.35 E-value=6.6e-06 Score=51.34 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=51.9
Q ss_pred HHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13766 82 DVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTL 147 (165)
Q Consensus 82 ~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~ 147 (165)
.+..+|..+|.+ |.|+++++..++... ..+.+.+..+|+.+|.+++|.|++++|..++..+
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~-----~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLKS-----GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHHc-----CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 467778888887 999999999998762 3456789999999999999999999999888654
No 61
>KOG0377|consensus
Probab=98.28 E-value=1.6e-05 Score=61.40 Aligned_cols=134 Identities=17% Similarity=0.153 Sum_probs=89.5
Q ss_pred HhhhhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHc------CC------
Q psy13766 9 MLKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRAL------GQ------ 76 (165)
Q Consensus 9 ~~~~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l------~~------ 76 (165)
.-+..+|+.++|+|+...+...+.+++.-. -+...+..-.. ....+|++....-...+..- +.
T Consensus 468 ~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~---LPWr~L~~kla--~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetL 542 (631)
T KOG0377|consen 468 DEFRKYDPKKSGKLSISHWAKCMENITGLN---LPWRLLRPKLA--NGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETL 542 (631)
T ss_pred HHHHhcChhhcCeeeHHHHHHHHHHHhcCC---CcHHHhhhhcc--CCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHH
Confidence 346778999999999999887776544332 00123332222 23445666655544433211 11
Q ss_pred CCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcC-CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13766 77 NPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKG-RSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTL 147 (165)
Q Consensus 77 ~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~ 147 (165)
.-....+..+|...|.| |.||.+||...+..+... ........+..+-+.+|.|+||+|++.||.+++.-.
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 11334577889999988 999999999888765432 233456778899999999999999999999888644
No 62
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.26 E-value=6.5e-06 Score=53.07 Aligned_cols=61 Identities=18% Similarity=0.084 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy13766 77 NPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLL 144 (165)
Q Consensus 77 ~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l 144 (165)
..-...+...|..+|.| |.|+.+|+..+. . .....-+...|..+|.|++|.||++||...+
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~-l------~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR-L------DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH-c------cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 34556788999999988 999999999765 1 2335667889999999999999999999988
No 63
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.23 E-value=1.1e-05 Score=50.06 Aligned_cols=67 Identities=10% Similarity=0.050 Sum_probs=52.1
Q ss_pred HHHHHHHhcC-CC--C-cccHHHHHHHHHhhhc--CCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q psy13766 82 DVKKYSQQHK-SD--E-RISFEVFLPIYQAISK--GRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148 (165)
Q Consensus 82 ~~~~~~~~~d-~~--g-~isf~eF~~~~~~~~~--~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~ 148 (165)
.+..+|..|| .+ | +|+..|+..++..... .........+..+++.+|.+++|.|+++||..++..+.
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 3566788887 44 6 5999999999866321 11233567899999999999999999999999998774
No 64
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.23 E-value=1.4e-05 Score=49.06 Aligned_cols=66 Identities=11% Similarity=0.067 Sum_probs=52.5
Q ss_pred HHHHHHhcCCC----CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q psy13766 83 VKKYSQQHKSD----ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148 (165)
Q Consensus 83 ~~~~~~~~d~~----g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~ 148 (165)
+-.+|..|+.+ |+|+.+||..++............+++..+++.+|.+++|.|+++||..++..+.
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 44667777762 6999999999996422233456778999999999999999999999998887663
No 65
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.22 E-value=1.9e-06 Score=39.95 Aligned_cols=25 Identities=36% Similarity=0.711 Sum_probs=22.2
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHH
Q psy13766 120 FIEGLRHFDKDGNGFISSAELRHLL 144 (165)
Q Consensus 120 ~~~~f~~~D~~~~G~i~~~e~~~~l 144 (165)
+..+|+.+|.|++|.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4578999999999999999999864
No 66
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.21 E-value=1.4e-05 Score=49.00 Aligned_cols=67 Identities=9% Similarity=0.110 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCC--C--CcccHHHHHHHHHhhhcCC--CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13766 81 CDVKKYSQQHKS--D--ERISFEVFLPIYQAISKGR--SADTADDFIEGLRHFDKDGNGFISSAELRHLLTTL 147 (165)
Q Consensus 81 ~~~~~~~~~~d~--~--g~isf~eF~~~~~~~~~~~--~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~ 147 (165)
..+..+|..+|. + |.|+.++|..++....... .....+.+..+++.+|.+++|.|++++|..++..+
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 346777888988 5 9999999999886522111 12346789999999999999999999999988765
No 67
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.20 E-value=1.6e-05 Score=48.82 Aligned_cols=67 Identities=9% Similarity=0.096 Sum_probs=52.7
Q ss_pred HHHHHHHhcC-CC--C-cccHHHHHHHHHhhhc--CCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q psy13766 82 DVKKYSQQHK-SD--E-RISFEVFLPIYQAISK--GRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148 (165)
Q Consensus 82 ~~~~~~~~~d-~~--g-~isf~eF~~~~~~~~~--~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~ 148 (165)
.+..+|..+| .+ | .|+.+++..++..-.+ .......+.+..+++.+|.+++|.|++++|..++..+.
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4678888997 45 8 5999999999976110 12235667799999999999999999999999887654
No 68
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.19 E-value=9.3e-06 Score=46.82 Aligned_cols=60 Identities=13% Similarity=0.079 Sum_probs=50.1
Q ss_pred HHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q psy13766 84 KKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148 (165)
Q Consensus 84 ~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~ 148 (165)
+.+|..+|.+ |.|+.+++..++... ..+.+.+..+|+.+|.+++|.|++++|..++..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-----g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-----GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-----CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 4578888887 999999999988662 23567899999999999999999999998886553
No 69
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.18 E-value=2.1e-05 Score=48.67 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcC-CC--C-cccHHHHHHHHHh-hhc-CCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q psy13766 80 ECDVKKYSQQHK-SD--E-RISFEVFLPIYQA-ISK-GRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148 (165)
Q Consensus 80 ~~~~~~~~~~~d-~~--g-~isf~eF~~~~~~-~~~-~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~ 148 (165)
...+.+.|..+| .+ | .|+..++..++.. +-. ....+..+.+..+|+.+|.+++|.|++++|..++..+.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 356788999996 76 8 5999999999864 211 11134567899999999999999999999999887764
No 70
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.15 E-value=3.2e-05 Score=47.43 Aligned_cols=64 Identities=13% Similarity=0.345 Sum_probs=52.0
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhh
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRA-----LGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAI 108 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~-----l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~ 108 (165)
+..+-.+|..|..+ .+.++..||+..+.. ++-.-.+..++.++...|.| |.|+|.||+.++..+
T Consensus 7 i~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 56788899999844 568999999999864 23345678899999999988 999999999988774
No 71
>KOG4251|consensus
Probab=98.12 E-value=4.6e-06 Score=59.68 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=84.5
Q ss_pred HHhhhhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCC--------
Q psy13766 8 IMLKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPT-------- 79 (165)
Q Consensus 8 ~~~~~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~-------- 79 (165)
..+++..|.+.+|+|+..|..+++..-+.+- -+.+.++-+.-|.+.|+|++|.|+.+|++--+.+..-+.-
T Consensus 104 mviFsKvDVNtDrkisAkEmqrwImektaEH-fqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevadair 182 (362)
T KOG4251|consen 104 MVIFSKVDVNTDRKISAKEMQRWIMEKTAEH-FQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIR 182 (362)
T ss_pred HHHHhhcccCccccccHHHHHHHHHHHHHHH-HHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHHhh
Confidence 3347899999999999999999886544332 0011234456789999999999999999876654422111
Q ss_pred -------HHHHHHHHHh-------cCCC---CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q psy13766 80 -------ECDVKKYSQQ-------HKSD---ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRH 142 (165)
Q Consensus 80 -------~~~~~~~~~~-------~d~~---g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~ 142 (165)
.++-+.+... .|.. --++-.||..++..-. ....-..-+..+.+.+|++|+..++..+|-.
T Consensus 183 lneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEh--SrgmLrfmVkeivrdlDqdgDkqlSvpeFis 260 (362)
T KOG4251|consen 183 LNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEH--SRGMLRFMVKEIVRDLDQDGDKQLSVPEFIS 260 (362)
T ss_pred ccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHh--hhhhHHHHHHHHHHHhccCCCeeecchhhhc
Confidence 1111222221 1111 2345588988886511 1122234567788999999999999999864
No 72
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.03 E-value=3.9e-05 Score=47.64 Aligned_cols=69 Identities=10% Similarity=0.088 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCC---C-CcccHHHHHHHHHhhhc--CCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC
Q psy13766 81 CDVKKYSQQHKS---D-ERISFEVFLPIYQAISK--GRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGN 149 (165)
Q Consensus 81 ~~~~~~~~~~d~---~-g~isf~eF~~~~~~~~~--~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~ 149 (165)
..+...|..+|. + |.|+.+++..++..... .....+.+.+..+++.+|.+++|.|++++|..++..+..
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 346778888875 3 89999999998864211 112345678999999999999999999999999887754
No 73
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.99 E-value=3.4e-05 Score=48.73 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=54.4
Q ss_pred CCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHh
Q psy13766 33 GYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQA 107 (165)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~ 107 (165)
.+++.+ .+....+|..+++ .+|.|+..+.+.++... .++...+..++...|.+ |.++++||+-.+..
T Consensus 3 ~ls~~e-----~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 3 KLSPEE-----KQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp --SCCH-----HHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCHHH-----HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 466677 7899999999885 58999999999998765 46668899999999887 99999999987754
No 74
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.97 E-value=4.5e-05 Score=46.78 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=49.5
Q ss_pred HHHHHHhcCCC----CcccHHHHHHHHHhhhcCC--CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q psy13766 83 VKKYSQQHKSD----ERISFEVFLPIYQAISKGR--SADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148 (165)
Q Consensus 83 ~~~~~~~~d~~----g~isf~eF~~~~~~~~~~~--~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~ 148 (165)
+-.+|..|+.. |.|+.+++..++....... .......+..+|+.+|.+++|.|++++|..++..+.
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 44567777533 7999999999996421110 112368899999999999999999999999887663
No 75
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.93 E-value=1.8e-05 Score=36.64 Aligned_cols=25 Identities=36% Similarity=0.635 Sum_probs=21.0
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHH
Q psy13766 47 YLEAFQLFDNRGDNKIHVSQIGNVL 71 (165)
Q Consensus 47 l~~~F~~~D~d~~g~i~~~e~~~~l 71 (165)
|+..|+.+|.|++|.|+..||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4568899999999999999998753
No 76
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.88 E-value=0.00014 Score=44.68 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=50.1
Q ss_pred HHHHHHh-cCCC---CcccHHHHHHHHHhhhcC--CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q psy13766 83 VKKYSQQ-HKSD---ERISFEVFLPIYQAISKG--RSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148 (165)
Q Consensus 83 ~~~~~~~-~d~~---g~isf~eF~~~~~~~~~~--~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~ 148 (165)
+..+|.. .+.+ +.|+.+||..++...... ........+..+++.+|.|++|.|+++||..++..+.
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4566777 4443 489999999999873210 1123457799999999999999999999999888764
No 77
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.84 E-value=9.3e-05 Score=40.10 Aligned_cols=45 Identities=13% Similarity=0.258 Sum_probs=20.9
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHH
Q psy13766 62 IHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQ 106 (165)
Q Consensus 62 i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~ 106 (165)
++..|++..|+.+++.+++..+..+|+.+|.+ |.+..+||..++.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 44455555555555555555555555555544 5555555555443
No 78
>KOG0751|consensus
Probab=97.76 E-value=0.00036 Score=54.81 Aligned_cols=100 Identities=15% Similarity=0.224 Sum_probs=75.9
Q ss_pred HHHHHHHhhhh---cCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhc-CCC--CcccHHHHHHHHHhhhcCCCCCC
Q psy13766 44 IDEYLEAFQLF---DNRGDNKIHVSQIGNVLRAL-GQNPTECDVKKYSQQH-KSD--ERISFEVFLPIYQAISKGRSADT 116 (165)
Q Consensus 44 ~~~l~~~F~~~---D~d~~g~i~~~e~~~~l~~l-~~~~~~~~~~~~~~~~-d~~--g~isf~eF~~~~~~~~~~~~~~~ 116 (165)
..+++.+|-+| +.++..+++.++|....-.+ +..-..+++..+.... |.. |-|||+||+.+-..++. +
T Consensus 32 ~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~-----p 106 (694)
T KOG0751|consen 32 PKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCA-----P 106 (694)
T ss_pred hHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccC-----c
Confidence 46777776555 67888899999988765544 5555555666666655 433 99999999987766443 3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q psy13766 117 ADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148 (165)
Q Consensus 117 ~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~ 148 (165)
......+|..||..++|.+|.+++.+++....
T Consensus 107 Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 107 DALFEVAFQLFDRLGNGEVSFEDVADIFGQTN 138 (694)
T ss_pred hHHHHHHHHHhcccCCCceehHHHHHHHhccc
Confidence 46778899999999999999999999998764
No 79
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.73 E-value=0.00019 Score=38.86 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=38.4
Q ss_pred cccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13766 95 RISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTL 147 (165)
Q Consensus 95 ~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~ 147 (165)
+++|.|...++..+. ......-+..+|+..|+.++|.|..+||.++++.+
T Consensus 1 kmsf~Evk~lLk~~N---I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMN---IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT-------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 368888888887632 24556778889999999999999999999999876
No 80
>PF14658 EF-hand_9: EF-hand domain
Probab=97.70 E-value=0.00032 Score=40.29 Aligned_cols=59 Identities=8% Similarity=0.241 Sum_probs=50.3
Q ss_pred HHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCC-CcccHHHHHHHHHH
Q psy13766 86 YSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGN-GFISSAELRHLLTT 146 (165)
Q Consensus 86 ~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~-G~i~~~e~~~~l~~ 146 (165)
.|..+|.. |.|.-..+..++... ....+.+..+..+.+.+|+++. |.|+++.|..+++.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~--~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAV--TGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHH--cCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 57778887 999999999999873 3336677899999999999998 99999999999875
No 81
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.68 E-value=0.00024 Score=55.17 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=49.8
Q ss_pred CCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13766 75 GQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTL 147 (165)
Q Consensus 75 ~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~ 147 (165)
|.......+..+|..+|.+ |.|+++||.. +..+|..+|.|++|.|+.+||.+.+...
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~----------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG----------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH----------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 6778888899999999988 9999999942 4568999999999999999999988753
No 82
>KOG0046|consensus
Probab=97.68 E-value=0.00017 Score=56.82 Aligned_cols=72 Identities=17% Similarity=0.274 Sum_probs=61.7
Q ss_pred cCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCC---CHHHHHHHHHhcCCC--CcccHHHHHHHHH
Q psy13766 32 YGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNP---TECDVKKYSQQHKSD--ERISFEVFLPIYQ 106 (165)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~---~~~~~~~~~~~~d~~--g~isf~eF~~~~~ 106 (165)
..++..+ ...+...|...| +++|+++..++..++...+... ..++++.++...+.+ |.|+|++|+.++.
T Consensus 11 ~~~tq~E-----l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 11 SQLTQEE-----LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred ccccHHH-----HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 4466777 889999999999 9999999999999999887654 577889999998888 9999999999776
Q ss_pred hhh
Q psy13766 107 AIS 109 (165)
Q Consensus 107 ~~~ 109 (165)
.+.
T Consensus 85 ~l~ 87 (627)
T KOG0046|consen 85 NLK 87 (627)
T ss_pred hhh
Confidence 644
No 83
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.68 E-value=0.00061 Score=41.82 Aligned_cols=66 Identities=6% Similarity=0.039 Sum_probs=50.9
Q ss_pred HHHHHHhcCCC-CcccHHHHHHHHHhhhc--CCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q psy13766 83 VKKYSQQHKSD-ERISFEVFLPIYQAISK--GRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148 (165)
Q Consensus 83 ~~~~~~~~d~~-g~isf~eF~~~~~~~~~--~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~ 148 (165)
+-.+|..|..+ +.++..||..++..-.+ .........+..+++..|.|+||.|++.||..++..+.
T Consensus 10 lI~~FhkYaG~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 10 MMLTFHKFAGEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 34567777766 89999999998864222 11233457799999999999999999999999987764
No 84
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.52 E-value=0.00033 Score=54.38 Aligned_cols=52 Identities=19% Similarity=0.128 Sum_probs=45.4
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhh
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAI 108 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~ 108 (165)
...+..+|+.+|.+++|.|+..||.. +..+|..+|.| |.|+++||...+...
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 46788899999999999999999942 47889999987 999999999998764
No 85
>KOG4251|consensus
Probab=97.48 E-value=0.00029 Score=50.62 Aligned_cols=133 Identities=11% Similarity=0.064 Sum_probs=75.3
Q ss_pred hhhhcCCCCCCcchHHHHHHHhcCC--------------CccccccccHHHHHHHhhhhcCCCCCcc---------cHHH
Q psy13766 10 LKSWCPTLKNSKLQFSQVLFKMYGY--------------EPVNKVMTSIDEYLEAFQLFDNRGDNKI---------HVSQ 66 (165)
Q Consensus 10 ~~~~~d~~~~g~i~~~e~~~~~~~~--------------~~~~~~~~~~~~l~~~F~~~D~d~~g~i---------~~~e 66 (165)
.+..+|++++|+++++||...+... ..+.+..+ -.+.|..-++++.+.. +-.|
T Consensus 145 hFraVDpdgDGhvsWdEykvkFlaskghsekevadairlneelkVDe----EtqevlenlkdRwyqaDsppadlllteeE 220 (362)
T KOG4251|consen 145 HFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDE----ETQEVLENLKDRWYQADSPPADLLLTEEE 220 (362)
T ss_pred heeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccH----HHHHHHHhhhhhhccccCchhhhhhhHHH
Confidence 3478899999999999997654211 11111111 1112222233444444 4477
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCC------HHHHHHHHHhhCCCCCCcccH
Q psy13766 67 IGNVLRAL-GQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADT------ADDFIEGLRHFDKDGNGFISS 137 (165)
Q Consensus 67 ~~~~l~~l-~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~------~~~~~~~f~~~D~~~~G~i~~ 137 (165)
|...|+.- ....-..-++.++..+|.+ ..+|-.+|+.....--...+... ....+..=..+|.|.+|.+|+
T Consensus 221 flsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTa 300 (362)
T KOG4251|consen 221 FLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTA 300 (362)
T ss_pred HHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeH
Confidence 77777542 1222233467778888888 56899999875532100000111 122333346789999999999
Q ss_pred HHHHHHHHH
Q psy13766 138 AELRHLLTT 146 (165)
Q Consensus 138 ~e~~~~l~~ 146 (165)
+|+......
T Consensus 301 eELe~y~dP 309 (362)
T KOG4251|consen 301 EELEDYVDP 309 (362)
T ss_pred HHHHhhcCc
Confidence 999776543
No 86
>KOG0169|consensus
Probab=97.40 E-value=0.0021 Score=52.94 Aligned_cols=111 Identities=12% Similarity=0.175 Sum_probs=91.2
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHH
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFI 121 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~ 121 (165)
..-+..+|+..|++.+|.++..+...++..++..+....+..+|...+.. +++...+|..+...... ..++.
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~------rpev~ 208 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTK------RPEVY 208 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc------CchHH
Confidence 45667899999999999999999999999999999999999999988554 89999999998876332 22688
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHH
Q psy13766 122 EGLRHFDKDGNGFISSAELRHLLTTLG--NFMSWVNLVEKEV 161 (165)
Q Consensus 122 ~~f~~~D~~~~G~i~~~e~~~~l~~~~--~~ls~~e~~~~~~ 161 (165)
.+|..+-.+ .++++.+++..++...+ .+.+.+.++++..
T Consensus 209 ~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~ 249 (746)
T KOG0169|consen 209 FLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIE 249 (746)
T ss_pred HHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 888777644 88999999999999874 3567777776653
No 87
>KOG4666|consensus
Probab=97.36 E-value=0.00071 Score=50.55 Aligned_cols=99 Identities=14% Similarity=0.101 Sum_probs=79.7
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHH
Q psy13766 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRAL-GQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFI 121 (165)
Q Consensus 45 ~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l-~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~ 121 (165)
..+...|..||.+.+|.++..+-...+..+ |...+...|+-.|+.++.. |.+.-.+|..+++.... ...-.+.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg----v~~l~v~ 334 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG----VEVLRVP 334 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC----cceeecc
Confidence 567888999999999999999988888766 6678888899999999877 77877887777766321 2233467
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13766 122 EGLRHFDKDGNGFISSAELRHLLTTL 147 (165)
Q Consensus 122 ~~f~~~D~~~~G~i~~~e~~~~l~~~ 147 (165)
.+|+.++...+|+|+.++|+.+...-
T Consensus 335 ~lf~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 335 VLFPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred ccchhhhcccCcceeHHHHHHHHHhC
Confidence 78999999999999999999887654
No 88
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.33 E-value=0.0021 Score=40.65 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCC-CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13766 82 DVKKYSQQHKSD-ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLT 145 (165)
Q Consensus 82 ~~~~~~~~~d~~-g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~ 145 (165)
....+|...+.. |.|+-++-..++.. . ..+.+.+..+|...|.+++|+++.+||.-++.
T Consensus 11 ~y~~~F~~l~~~~g~isg~~a~~~f~~--S---~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 11 KYDQIFQSLDPQDGKISGDQAREFFMK--S---GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHCTSSSTTEEEHHHHHHHHHH--T---TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEeHHHHHHHHHH--c---CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 456778877766 99999999887766 2 56779999999999999999999999976554
No 89
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.33 E-value=0.00033 Score=32.42 Aligned_cols=27 Identities=44% Similarity=0.736 Sum_probs=23.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13766 120 FIEGLRHFDKDGNGFISSAELRHLLTT 146 (165)
Q Consensus 120 ~~~~f~~~D~~~~G~i~~~e~~~~l~~ 146 (165)
+..+|+.+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999998875
No 90
>KOG2562|consensus
Probab=97.28 E-value=0.0027 Score=49.63 Aligned_cols=122 Identities=8% Similarity=0.019 Sum_probs=88.4
Q ss_pred cCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhh----hhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy13766 14 CPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQ----LFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQ 89 (165)
Q Consensus 14 ~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~----~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~ 89 (165)
.|.+++|.|+-+++.++..+.... .-+.++|. .+-...+|+++.++|.-.+-++.-.-+..-++-.|+-
T Consensus 287 LD~Dhd~lidk~~L~ry~d~tlt~-------~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrc 359 (493)
T KOG2562|consen 287 LDTDHDGLIDKEDLKRYGDHTLTE-------RIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRC 359 (493)
T ss_pred hccccccccCHHHHHHHhccchhh-------HHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheee
Confidence 488899999999988887553332 35677887 3445678999999999988888666666667888887
Q ss_pred cCCC--CcccHHHHHHHHHhhhc------CCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q psy13766 90 HKSD--ERISFEVFLPIYQAISK------GRSADTADDFIEGLRHFDKDGNGFISSAELRH 142 (165)
Q Consensus 90 ~d~~--g~isf~eF~~~~~~~~~------~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~ 142 (165)
+|.+ |.++-.+...++..... ......++.+-.++...-+...|+||+.+|+.
T Consensus 360 lDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 360 LDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred eeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 7776 88888777666543322 22233345556677777788899999999986
No 91
>KOG0041|consensus
Probab=97.19 E-value=0.0039 Score=43.59 Aligned_cols=90 Identities=8% Similarity=0.016 Sum_probs=66.5
Q ss_pred HHhhhhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHc--CCCCCHHHHHH
Q psy13766 8 IMLKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRAL--GQNPTECDVKK 85 (165)
Q Consensus 8 ~~~~~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l--~~~~~~~~~~~ 85 (165)
...+..+|.+.||+|++.|+..+|-.+-.+++ +-.++.+.+..|.|.+|+|+..+|.-+++.. |.--....+..
T Consensus 102 ~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQT----HL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~~ 177 (244)
T KOG0041|consen 102 ESMFKQYDEDRDGFIDLMELKRMMEKLGAPQT----HLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLLR 177 (244)
T ss_pred HHHHHHhcccccccccHHHHHHHHHHhCCchh----hHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHHH
Confidence 44567899999999999999999988877762 6788999999999999999999999998765 33233344445
Q ss_pred HHHh--cCCC--CcccHHHH
Q psy13766 86 YSQQ--HKSD--ERISFEVF 101 (165)
Q Consensus 86 ~~~~--~d~~--g~isf~eF 101 (165)
+-.. +|.. |..--..|
T Consensus 178 LAr~~eVDVskeGV~GAknF 197 (244)
T KOG0041|consen 178 LARLSEVDVSKEGVSGAKNF 197 (244)
T ss_pred HHHhcccchhhhhhhhHHHH
Confidence 4444 4544 44333444
No 92
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.16 E-value=0.00053 Score=44.04 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=11.0
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHH
Q psy13766 46 EYLEAFQLFDNRGDNKIHVSQIGNVLR 72 (165)
Q Consensus 46 ~l~~~F~~~D~d~~g~i~~~e~~~~l~ 72 (165)
.+.--|..+|.|+||.|+..|+..+..
T Consensus 55 ~~~W~F~~LD~n~d~~L~~~El~~l~~ 81 (113)
T PF10591_consen 55 VVHWKFCQLDRNKDGVLDRSELKPLRR 81 (113)
T ss_dssp HHHHHHHHH--T-SSEE-TTTTGGGGS
T ss_pred hhhhhHhhhcCCCCCccCHHHHHHHHH
Confidence 344444455555555555555444444
No 93
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.02 E-value=0.001 Score=30.66 Aligned_cols=27 Identities=44% Similarity=0.776 Sum_probs=22.1
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHH
Q psy13766 47 YLEAFQLFDNRGDNKIHVSQIGNVLRA 73 (165)
Q Consensus 47 l~~~F~~~D~d~~g~i~~~e~~~~l~~ 73 (165)
++.+|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 566788888888889999988888764
No 94
>KOG0169|consensus
Probab=96.96 E-value=0.019 Score=47.65 Aligned_cols=130 Identities=18% Similarity=0.162 Sum_probs=99.0
Q ss_pred HhhhhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy13766 9 MLKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQ 88 (165)
Q Consensus 9 ~~~~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~ 88 (165)
....+.|.+++|++++.+-......++..- ....+..+|+..+.-+++.+...++......+...+ ++..+|.
T Consensus 140 ~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l----~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~ 212 (746)
T KOG0169|consen 140 SIFQEADKNKNGHMSFDEVLDLLKQLNVQL----SESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFV 212 (746)
T ss_pred HHHHHHccccccccchhhHHHHHHHHHHhh----hHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHH
Confidence 446788999999999999988887776654 146778889888888899999999999988877666 6778888
Q ss_pred hcCCC-CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhC----CCCCCcccHHHHHHHHHH
Q psy13766 89 QHKSD-ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFD----KDGNGFISSAELRHLLTT 146 (165)
Q Consensus 89 ~~d~~-g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D----~~~~G~i~~~e~~~~l~~ 146 (165)
.+..+ +.++.+++..++......+ ....+.+..+.+.+. ..+.+.++++.|.++|-+
T Consensus 213 ~~s~~~~~ls~~~L~~Fl~~~q~e~-~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 213 QYSHGKEYLSTDDLLRFLEEEQGED-GATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred HHhCCCCccCHHHHHHHHHHhcccc-cccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 87666 8999999999888753222 333445555555543 345677999999998864
No 95
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.61 E-value=0.00088 Score=43.04 Aligned_cols=63 Identities=14% Similarity=0.036 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q psy13766 75 GQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRH 142 (165)
Q Consensus 75 ~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~ 142 (165)
....-...+...|..+|.| |.++-.|+..+...+ .+.+.=+...|+..|.|+||.||+.|+..
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-----~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL-----MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-----STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-----hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4456677789999999988 999999988776543 22233467788999999999999999864
No 96
>KOG4666|consensus
Probab=96.53 E-value=0.0073 Score=45.34 Aligned_cols=85 Identities=9% Similarity=0.060 Sum_probs=64.0
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCc
Q psy13766 57 RGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGF 134 (165)
Q Consensus 57 d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~ 134 (165)
.+.+.|-..+|...++ .+.+ +.+..+|..+|.+ |.++|.+.+..+..++. +....+-+..+|+.|+..-||.
T Consensus 239 ~kg~~igi~efa~~l~---vpvs-d~l~~~f~LFde~~tg~~D~re~v~~lavlc~--p~~t~~iiq~afk~f~v~eDg~ 312 (412)
T KOG4666|consen 239 AKGPDIGIVEFAVNLR---VPVS-DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCG--PPVTPVIIQYAFKRFSVAEDGI 312 (412)
T ss_pred ccCCCcceeEeeeeee---cchh-hhhhhhhheecCCCCCcccHHHHhhhheeeeC--CCCcHHHHHHHHHhcccccccc
Confidence 3455566666654432 2333 6678889999888 99999999988877554 2344577899999999999999
Q ss_pred ccHHHHHHHHHHh
Q psy13766 135 ISSAELRHLLTTL 147 (165)
Q Consensus 135 i~~~e~~~~l~~~ 147 (165)
++.++|.-+++..
T Consensus 313 ~ge~~ls~ilq~~ 325 (412)
T KOG4666|consen 313 SGEHILSLILQVV 325 (412)
T ss_pred cchHHHHHHHHHh
Confidence 9999999888753
No 97
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.50 E-value=0.0091 Score=35.95 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=34.5
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHHcC-C-CCCHHHHHHHHHhcCCC------CcccHHHHHHHHH
Q psy13766 47 YLEAFQLFDNRGDNKIHVSQIGNVLRALG-Q-NPTECDVKKYSQQHKSD------ERISFEVFLPIYQ 106 (165)
Q Consensus 47 l~~~F~~~D~d~~g~i~~~e~~~~l~~l~-~-~~~~~~~~~~~~~~d~~------g~isf~eF~~~~~ 106 (165)
+..+|..|.. +.+.++.++|...|+.-. . ..+...+..++..+.++ +.++++.|..++.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 4566666644 566677777777766542 2 34566666666665321 5666666666653
No 98
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.33 E-value=0.013 Score=35.24 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=50.8
Q ss_pred HHHHHHHhcCCC-CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHHHhC
Q psy13766 82 DVKKYSQQHKSD-ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKD----GNGFISSAELRHLLTTLG 148 (165)
Q Consensus 82 ~~~~~~~~~d~~-g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~----~~G~i~~~e~~~~l~~~~ 148 (165)
+|+.+|..+..+ +.++.++|..++..-.+ ......+.+..++..+.++ ..+.+|++.|..+|.+-.
T Consensus 1 ei~~if~~ys~~~~~mt~~~f~~FL~~eQ~-~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSSDKEYMTAEEFRRFLREEQG-EPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCTTSSSEEHHHHHHHHHHTSS--TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhCCCCcCCHHHHHHHHHHHhc-cccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 477889998776 89999999999976322 2134577888888888654 479999999999997643
No 99
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.09 E-value=0.023 Score=38.95 Aligned_cols=103 Identities=19% Similarity=0.162 Sum_probs=65.6
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCC----C-CcccHHHHHHHHHhhhc----CCCCC-
Q psy13766 46 EYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKS----D-ERISFEVFLPIYQAISK----GRSAD- 115 (165)
Q Consensus 46 ~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~----~-g~isf~eF~~~~~~~~~----~~~~~- 115 (165)
.|++=..-+|.|+||.|.+-|--..++++|..+.-+.+-.++-...- . +.+--.-|.-.+..+++ ++...
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 44444455899999999999999999999998776654444322211 1 11110111111111111 11111
Q ss_pred ------CHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q psy13766 116 ------TADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148 (165)
Q Consensus 116 ------~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~ 148 (165)
..+++.++|.+++..+.+.||..|+.++++.-.
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr 126 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNR 126 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc
Confidence 246799999999999999999999999998754
No 100
>KOG1707|consensus
Probab=95.91 E-value=0.08 Score=43.00 Aligned_cols=105 Identities=15% Similarity=0.301 Sum_probs=70.6
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHH-HcCCCCCHHHHHHHHHhcC---CC----CcccHHHHHHHHHhhhcC----
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLR-ALGQNPTECDVKKYSQQHK---SD----ERISFEVFLPIYQAISKG---- 111 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~-~l~~~~~~~~~~~~~~~~d---~~----g~isf~eF~~~~~~~~~~---- 111 (165)
...|.++|...|.|.||.++-.|+...=. .++.++...++..+-...+ ++ +.++..-|+.+...+...
T Consensus 194 v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~E 273 (625)
T KOG1707|consen 194 VKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHE 273 (625)
T ss_pred HHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhcccc
Confidence 46788999999999999999999876533 2466666666554443322 22 556666676544322110
Q ss_pred ----------------------------C-------CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q psy13766 112 ----------------------------R-------SADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148 (165)
Q Consensus 112 ----------------------------~-------~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~ 148 (165)
. ....-+-+..+|..+|.|+||.++.+||..++...+
T Consensus 274 ttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 274 TTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred chhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 0 000012367789999999999999999999998875
No 101
>KOG0035|consensus
Probab=95.74 E-value=0.071 Score=45.37 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=76.6
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHH-----HHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCC
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTEC-----DVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADT 116 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~-----~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~ 116 (165)
..+++..|.-++....|-++.+++..++-.+|....++ ++..+....|.+ |.++|.+|..++.. ...-...
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R--~~e~l~~ 823 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER--EYEDLDT 823 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh--hhhhhcH
Confidence 57889999999999899999999999999999887652 344555556666 88999999999977 4433445
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHH
Q psy13766 117 ADDFIEGLRHFDKDGNGFISSAELRH 142 (165)
Q Consensus 117 ~~~~~~~f~~~D~~~~G~i~~~e~~~ 142 (165)
...+..+|..+-++.. +|.++++..
T Consensus 824 ~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 824 ELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 6678888988887666 899999887
No 102
>KOG0042|consensus
Probab=95.46 E-value=0.035 Score=44.85 Aligned_cols=72 Identities=15% Similarity=0.202 Sum_probs=63.7
Q ss_pred CCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhc
Q psy13766 34 YEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISK 110 (165)
Q Consensus 34 ~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~ 110 (165)
+++.+ ....+..|..+|.|+.|+++..+...+|...+..++++.+.++....+.+ |.+...+|..++..+..
T Consensus 587 ~~~~~-----~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 587 LTPED-----FLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred cCHHH-----HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 45555 67778899999999999999999999999999999999999999999877 99999999999987544
No 103
>KOG4065|consensus
Probab=95.05 E-value=0.15 Score=32.62 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=38.3
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHc------CC----CCCHHHHHHHHHhc----CCC--CcccHHHHHH
Q psy13766 49 EAFQLFDNRGDNKIHVSQIGNVLRAL------GQ----NPTECDVKKYSQQH----KSD--ERISFEVFLP 103 (165)
Q Consensus 49 ~~F~~~D~d~~g~i~~~e~~~~l~~l------~~----~~~~~~~~~~~~~~----d~~--g~isf~eF~~ 103 (165)
..|...|-|++|.++--|+..+++-. |. -+++.++..++... |.| |.|+|-||+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 57889999999999999998887643 22 14555655555433 333 7788888764
No 104
>KOG4065|consensus
Probab=94.94 E-value=0.092 Score=33.56 Aligned_cols=70 Identities=17% Similarity=0.031 Sum_probs=48.2
Q ss_pred ChhhhhHHHhhhhcCCCCCCcchHHHHHHHhcCCCc------cccccccHHHHH----HHhhhhcCCCCCcccHHHHHHH
Q psy13766 1 MEEQRTEIMLKSWCPTLKNSKLQFSQVLFKMYGYEP------VNKVMTSIDEYL----EAFQLFDNRGDNKIHVSQIGNV 70 (165)
Q Consensus 1 ~~~~~~~~~~~~~~d~~~~g~i~~~e~~~~~~~~~~------~~~~~~~~~~l~----~~F~~~D~d~~g~i~~~e~~~~ 70 (165)
|-+++..-..+++.|.++|+.+.--|++..++++-. +..+.++..++. .+.+--|.|++|.|++.||.+.
T Consensus 63 mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 63 MTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred CCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 344555566789999999999999888877766533 112223334444 4455557899999999998764
No 105
>KOG0040|consensus
Probab=94.92 E-value=0.18 Score=45.34 Aligned_cols=83 Identities=14% Similarity=0.227 Sum_probs=60.5
Q ss_pred CCHHH---HHHHHHhcCCC--CcccHHHHHHHHHhhhc----CCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-
Q psy13766 78 PTECD---VKKYSQQHKSD--ERISFEVFLPIYQAISK----GRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTL- 147 (165)
Q Consensus 78 ~~~~~---~~~~~~~~d~~--g~isf~eF~~~~~~~~~----~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~- 147 (165)
+++.. ...+|..+|.+ |.+++.+|..++..+-- -....+...+..+....|++.+|+|++.+...++.+=
T Consensus 2247 VtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2247 VTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred CCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 55554 45678888888 99999999999875311 1223455689999999999999999999999987653
Q ss_pred C-CCCCHHHHHHHH
Q psy13766 148 G-NFMSWVNLVEKE 160 (165)
Q Consensus 148 ~-~~ls~~e~~~~~ 160 (165)
. .-+|.++++...
T Consensus 2327 TeNI~s~~eIE~Af 2340 (2399)
T KOG0040|consen 2327 TENILSSEEIEDAF 2340 (2399)
T ss_pred cccccchHHHHHHH
Confidence 2 235666655443
No 106
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.18 E-value=0.37 Score=32.69 Aligned_cols=62 Identities=19% Similarity=0.365 Sum_probs=46.3
Q ss_pred HHHhhhh---cCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhh
Q psy13766 48 LEAFQLF---DNRGDNKIHVSQIGNVLRALGQ---NPTECDVKKYSQQHKSD--ERISFEVFLPIYQAIS 109 (165)
Q Consensus 48 ~~~F~~~---D~d~~g~i~~~e~~~~l~~l~~---~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~ 109 (165)
..+|..| -......++...|..+++..++ .++...++-+|..+... ..|+|++|...+..+.
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 4455555 3455668999999999998754 48899999999997544 6799999998887644
No 107
>KOG1955|consensus
Probab=93.81 E-value=0.21 Score=39.91 Aligned_cols=60 Identities=12% Similarity=0.030 Sum_probs=37.2
Q ss_pred HHhhhhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHH
Q psy13766 8 IMLKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRA 73 (165)
Q Consensus 8 ~~~~~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~ 73 (165)
+..+..+.++-+|.|+-.--.+++.. ++-- +.+|..+|...|.++||-++..||+.+++.
T Consensus 234 vnQFrtvQpDp~gfisGsaAknFFtK-Sklp-----i~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 234 VNQFRTVQPDPHGFISGSAAKNFFTK-SKLP-----IEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HhhhhcccCCcccccccHHHHhhhhh-ccCc-----hHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 33345566666777765544444431 1222 567777777778888888888888777653
No 108
>KOG0046|consensus
Probab=92.98 E-value=0.59 Score=37.72 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=53.2
Q ss_pred CCCHHHH---HHHHHhcCCC-CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13766 77 NPTECDV---KKYSQQHKSD-ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTL 147 (165)
Q Consensus 77 ~~~~~~~---~~~~~~~d~~-g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~ 147 (165)
.++..++ +..|...|.. |+|+..+....+............+.++.+....+.+.+|.|++++|..++-.+
T Consensus 12 ~~tq~El~~l~~kF~~~d~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 12 QLTQEELRELKEKFNKLDDQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred cccHHHHHHHHHHHHhhcCCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 3444444 4556667744 999999999888775443333447889999999999999999999998876554
No 109
>PLN02952 phosphoinositide phospholipase C
Probab=92.94 E-value=1.6 Score=36.21 Aligned_cols=87 Identities=8% Similarity=-0.015 Sum_probs=52.9
Q ss_pred CCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCC-CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhh----C--
Q psy13766 58 GDNKIHVSQIGNVLRALGQ--NPTECDVKKYSQQHKSD-ERISFEVFLPIYQAISKGRSADTADDFIEGLRHF----D-- 128 (165)
Q Consensus 58 ~~g~i~~~e~~~~l~~l~~--~~~~~~~~~~~~~~d~~-g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~----D-- 128 (165)
+.|.++.++|..+.+.+.. ..+..++..+|..+..+ +.++.++|..++....... ....+.+..++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q~e~-~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQDEL-DCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCc-CCCHHHHHHHHHHHHhhcccc
Confidence 3577888888776666542 23677788888877555 6788888888876633221 22334444444322 1
Q ss_pred -CCCCCcccHHHHHHHHH
Q psy13766 129 -KDGNGFISSAELRHLLT 145 (165)
Q Consensus 129 -~~~~G~i~~~e~~~~l~ 145 (165)
..+.+.++++.|..+|.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 11234578888888775
No 110
>PLN02952 phosphoinositide phospholipase C
Probab=92.32 E-value=1.1 Score=37.22 Aligned_cols=64 Identities=16% Similarity=0.268 Sum_probs=48.3
Q ss_pred CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHH
Q psy13766 94 ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGN--FMSWVNLVEK 159 (165)
Q Consensus 94 g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~--~ls~~e~~~~ 159 (165)
|.++|.+|..+...+.. ....+..++..+|..+-. +.+.++.++|..+|...+. ..+.+++..+
T Consensus 15 g~l~f~~f~~f~~~~k~-~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i 80 (599)
T PLN02952 15 GSYNYKMFNLFNRKFKI-TEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRI 80 (599)
T ss_pred CCcCHHHHHHHHHHhcc-ccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 89999999888876532 224467889999999964 4468999999999998753 3566665554
No 111
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=92.18 E-value=1 Score=30.54 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=42.4
Q ss_pred CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q psy13766 94 ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148 (165)
Q Consensus 94 g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~ 148 (165)
..++-..|..+|......+.......+-.+|..+-..+...|++++|..+|..+.
T Consensus 17 ~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 17 TEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp SEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 6789999999998765555566778889999998777878899999999998774
No 112
>KOG1955|consensus
Probab=92.02 E-value=0.48 Score=37.95 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=53.9
Q ss_pred CCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHh
Q psy13766 34 YEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQA 107 (165)
Q Consensus 34 ~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~ 107 (165)
+++++ .+.+-.-|+.+.+|-+|.|+-.--+.++.+..+ +-.++.-++...|.+ |-+++.||++.+..
T Consensus 225 IT~EQ-----ReYYvnQFrtvQpDp~gfisGsaAknFFtKSkl--pi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 225 ITPEQ-----REYYVNQFRTVQPDPHGFISGSAAKNFFTKSKL--PIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred cCHHH-----HHHHHhhhhcccCCcccccccHHHHhhhhhccC--chHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 66676 677778899999999999999999998886554 445677888877766 99999999987753
No 113
>KOG1265|consensus
Probab=91.89 E-value=5.1 Score=34.80 Aligned_cols=79 Identities=10% Similarity=0.145 Sum_probs=63.7
Q ss_pred chHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCC----------CCCHHHHHHHHHhcC
Q psy13766 22 LQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQ----------NPTECDVKKYSQQHK 91 (165)
Q Consensus 22 i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~----------~~~~~~~~~~~~~~d 91 (165)
.+++.|..++..+.+.. ++..+|..+-.+..-+++.+++..+|+.-.. ......+..++..|.
T Consensus 205 f~~e~f~~~l~klcpR~-------eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyE 277 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKLCPRP-------EIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYE 277 (1189)
T ss_pred ccHHHHHHHHHhcCCch-------hHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcC
Confidence 46777788887777754 6899999998888889999999999975422 356777899999987
Q ss_pred CC------CcccHHHHHHHHHh
Q psy13766 92 SD------ERISFEVFLPIYQA 107 (165)
Q Consensus 92 ~~------g~isf~eF~~~~~~ 107 (165)
++ |.++-+-|+.++..
T Consensus 278 p~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 278 PNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred CchhhhhccccchhhhHHHhhC
Confidence 65 89999999988754
No 114
>KOG1029|consensus
Probab=91.74 E-value=0.3 Score=41.14 Aligned_cols=62 Identities=13% Similarity=0.017 Sum_probs=37.5
Q ss_pred hhHHHhhhhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHH
Q psy13766 5 RTEIMLKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLR 72 (165)
Q Consensus 5 ~~~~~~~~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~ 72 (165)
.....+++..|...+|++|-..-...+..-.-++ ..|..+|..-|.|+||+++.+||..++.
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq------~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQ------NQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHhcCCch------hhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 3455566777777777777655544442211121 3466677777777777777777766554
No 115
>KOG3555|consensus
Probab=91.39 E-value=0.7 Score=35.33 Aligned_cols=96 Identities=8% Similarity=-0.009 Sum_probs=66.1
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHc---CCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHH
Q psy13766 46 EYLEAFQLFDNRGDNKIHVSQIGNVLRAL---GQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDF 120 (165)
Q Consensus 46 ~l~~~F~~~D~d~~g~i~~~e~~~~l~~l---~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~ 120 (165)
.|+.=|+.+=.+.++......+...-..+ -.++-...+.++|..+|.| +.++..|...+... ..+.=+
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld-------knE~Ci 284 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD-------KNEACI 284 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc-------CchhHH
Confidence 44455665544544444443333332222 2245677899999999998 89999998877654 223557
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhC
Q psy13766 121 IEGLRHFDKDGNGFISSAELRHLLTTLG 148 (165)
Q Consensus 121 ~~~f~~~D~~~~G~i~~~e~~~~l~~~~ 148 (165)
+..|+..|...+|.|+-.|+.-.+..-+
T Consensus 285 kpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 285 KPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred HHHHhhhcccccCccccchhhhhhccCC
Confidence 8889999999999999999988776655
No 116
>KOG2243|consensus
Probab=91.29 E-value=0.63 Score=42.04 Aligned_cols=56 Identities=14% Similarity=0.331 Sum_probs=45.3
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHH
Q psy13766 50 AFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQ 106 (165)
Q Consensus 50 ~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~ 106 (165)
.|+.||+|+.|.|+..+|.+++.. ..+.++.+++-++.-...+ ..++|++|+.-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 578899999999999999999864 4567888888887655444 8899999987654
No 117
>KOG1029|consensus
Probab=91.03 E-value=0.39 Score=40.46 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=47.8
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHH
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQ 106 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~ 106 (165)
......+|..+|+..+|+++...-+.+|-..+ ++...+-.++...|.| |.++-+||+-.|.
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 56778899999999999999999998886544 4555566666665555 9999999986554
No 118
>KOG4347|consensus
Probab=90.87 E-value=0.49 Score=39.00 Aligned_cols=57 Identities=7% Similarity=0.085 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHH
Q psy13766 80 ECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAEL 140 (165)
Q Consensus 80 ~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~ 140 (165)
...+..+|...|.+ |.++|.+++..+..+.. ....+.+..+|+.+|++++ ....++.
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~---~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA---GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh---hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 33445556555555 66666666665555433 2333455566666666666 5555554
No 119
>KOG3866|consensus
Probab=90.76 E-value=2.9 Score=31.66 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=16.2
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHH
Q psy13766 49 EAFQLFDNRGDNKIHVSQIGNVLR 72 (165)
Q Consensus 49 ~~F~~~D~d~~g~i~~~e~~~~l~ 72 (165)
..|...|.|++|.++-.++-..++
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFt 271 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFT 271 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHH
Confidence 456666777777777777666654
No 120
>KOG4347|consensus
Probab=90.17 E-value=0.78 Score=37.88 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=60.0
Q ss_pred chHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC-CcccHHH
Q psy13766 22 LQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD-ERISFEV 100 (165)
Q Consensus 22 i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~-g~isf~e 100 (165)
+.|..|...++.+.+.. .+..-+.++|+.+|.+.+|.|+..++...|..+.....-..+.-+|..|+.+ ...+.++
T Consensus 535 i~~~~f~~~f~~l~pw~---~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~~~d~e~ 611 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWA---VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPADELDREE 611 (671)
T ss_pred HHHhhHHHHhhccCchh---HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcccccccc
Confidence 56677777777777664 2234567899999999999999999999999988887888889999999887 4444444
Q ss_pred H
Q psy13766 101 F 101 (165)
Q Consensus 101 F 101 (165)
.
T Consensus 612 ~ 612 (671)
T KOG4347|consen 612 V 612 (671)
T ss_pred c
Confidence 3
No 121
>KOG4578|consensus
Probab=89.08 E-value=0.26 Score=37.36 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=16.4
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHH
Q psy13766 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLR 72 (165)
Q Consensus 45 ~~l~~~F~~~D~d~~g~i~~~e~~~~l~ 72 (165)
+-.+..|..+|.|+|..|+..|++.+|.
T Consensus 370 kC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 370 KCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred HHhhhcchhcccCCCceecHHHHhhhhc
Confidence 3444555556666666666666666654
No 122
>KOG3555|consensus
Probab=88.92 E-value=0.81 Score=35.02 Aligned_cols=56 Identities=13% Similarity=-0.055 Sum_probs=26.9
Q ss_pred hhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcC
Q psy13766 12 SWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALG 75 (165)
Q Consensus 12 ~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~ 75 (165)
+..|.+-+|.|+..|+..+.-. +- ..-++..|..+|...+|.|+..|+..+++..+
T Consensus 257 nklD~N~Dl~Ld~sEl~~I~ld--kn------E~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 257 NKLDTNYDLLLDQSELRAIELD--KN------EACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hccccccccccCHHHhhhhhcc--Cc------hhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 4445555555555554433311 11 23445555555555555555555555554443
No 123
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=86.37 E-value=1.7 Score=26.29 Aligned_cols=30 Identities=13% Similarity=0.004 Sum_probs=26.7
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy13766 133 GFISSAELRHLLTTLGNFMSWVNLVEKEVI 162 (165)
Q Consensus 133 G~i~~~e~~~~l~~~~~~ls~~e~~~~~~~ 162 (165)
..||.+||....+..+.++|+++++.+..+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~ 42 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANI 42 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 469999999999999999999999988764
No 124
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=85.52 E-value=1 Score=26.16 Aligned_cols=29 Identities=28% Similarity=0.560 Sum_probs=24.4
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13766 116 TADDFIEGLRHFDKDGNGFISSAELRHLLT 145 (165)
Q Consensus 116 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~ 145 (165)
..+.+..+|+.+ .++.++||.+||++.|.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 347899999999 68889999999998753
No 125
>PLN02228 Phosphoinositide phospholipase C
Probab=84.34 E-value=7.4 Score=32.22 Aligned_cols=67 Identities=12% Similarity=0.217 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHhcCCCCcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHH
Q psy13766 78 PTECDVKKYSQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKD----GNGFISSAELRHLLT 145 (165)
Q Consensus 78 ~~~~~~~~~~~~~d~~g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~----~~G~i~~~e~~~~l~ 145 (165)
.+..++..+|..+..++.++.++|..++....... ....+.+..++..+... ..|.++++.|..+|.
T Consensus 21 ~~~~ei~~if~~~s~~~~~t~~~~~~FL~~~Q~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 21 EPPVSIKRLFEAYSRNGKMSFDELLRFVSEVQGER-HAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CCcHHHHHHHHHhcCCCccCHHHHHHHHHHhcCCc-cCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 34555666666654335566666666665422211 12234445555555432 234566666666554
No 126
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=83.60 E-value=2.7 Score=27.96 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=35.4
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhcC---------CCCcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCC
Q psy13766 60 NKIHVSQIGNVLRALGQNPTECDVKKYSQQHK---------SDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKD 130 (165)
Q Consensus 60 g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d---------~~g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~ 130 (165)
+.|+..||.+.=.-+. .+..+++.++..+. .++.|+|+.|..+|..+.. ...+.+-...+|..|-+.
T Consensus 6 ~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe--~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLE--VDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT---S--HHHHHHHHHHS---
T ss_pred eccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHc--CCCCHHHHHHHHHHHhCc
Confidence 4567777766433221 23334555555542 2268999999999988544 337778888899888654
Q ss_pred C
Q psy13766 131 G 131 (165)
Q Consensus 131 ~ 131 (165)
.
T Consensus 82 ~ 82 (138)
T PF14513_consen 82 P 82 (138)
T ss_dssp -
T ss_pred c
Confidence 4
No 127
>KOG1707|consensus
Probab=83.07 E-value=2.8 Score=34.54 Aligned_cols=62 Identities=16% Similarity=0.326 Sum_probs=43.1
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHhcCCC-CcccHHHHHHHHHh
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNP-TECDVKKYSQQHKSD-ERISFEVFLPIYQA 107 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~-~~~~~~~~~~~~d~~-g~isf~eF~~~~~~ 107 (165)
.+-+..+|.+||.|+||-++..|+...+...+-.+ ....-... ..-.+ |.+++.-|+..+..
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~--t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS--TVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc--ceecccceeehhhHHHHHHH
Confidence 46677899999999999999999999998774333 11100000 00013 89999999887765
No 128
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=82.87 E-value=2.2 Score=18.56 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=13.1
Q ss_pred CCCCCCcccHHHHHHHHH
Q psy13766 128 DKDGNGFISSAELRHLLT 145 (165)
Q Consensus 128 D~~~~G~i~~~e~~~~l~ 145 (165)
|.|++|.|+.-++.-+-+
T Consensus 1 DvN~DG~vna~D~~~lk~ 18 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLKK 18 (21)
T ss_dssp -TTSSSSSSHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHH
Confidence 678999999888765543
No 129
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=82.71 E-value=2.9 Score=26.02 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=32.7
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcC----CC-CcccHHHHHHHHHh
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHK----SD-ERISFEVFLPIYQA 107 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d----~~-g~isf~eF~~~~~~ 107 (165)
...+...|..+.. +|+++...|..|+ |..-+.+...++|..+. .. +.|+-+|...++..
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence 4566666766655 6788888887776 55555666666665441 11 45666666555544
No 130
>KOG2871|consensus
Probab=82.13 E-value=2.7 Score=32.58 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHH
Q psy13766 114 ADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVE 158 (165)
Q Consensus 114 ~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~ 158 (165)
..+.+.++.+|+.+|+.+.|+|+..-++.++.......++.+.-.
T Consensus 305 ~~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~ 349 (449)
T KOG2871|consen 305 ENPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVM 349 (449)
T ss_pred CCCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHH
Confidence 345678999999999999999999999999998876566554433
No 131
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=79.67 E-value=18 Score=25.11 Aligned_cols=64 Identities=11% Similarity=0.168 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCC------HHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy13766 78 PTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADT------ADDFIEGLRHFDKDGNGFISSAELRHLL 144 (165)
Q Consensus 78 ~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~------~~~~~~~f~~~D~~~~G~i~~~e~~~~l 144 (165)
..+...+++|..++.. +.+++.|...++.. ......+ .-++..+|... .+.+|.+..++++.+.
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~--nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKG--NRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh--ccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 4567789999999875 88999999988876 2221111 22444555444 5678999999998765
No 132
>KOG4578|consensus
Probab=78.75 E-value=1.7 Score=33.14 Aligned_cols=63 Identities=19% Similarity=0.131 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13766 82 DVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTT 146 (165)
Q Consensus 82 ~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~ 146 (165)
.+...|..+|.| +.|.-.|+..+-..+.+ ...+..=.+.+|+..|.|+|-.||++|++..|..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k--~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLK--KSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHh--hccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 455667777877 66665554433322211 1223345677899999999999999999877653
No 133
>KOG4004|consensus
Probab=76.88 E-value=1.2 Score=31.38 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=35.2
Q ss_pred CCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHH
Q psy13766 18 KNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVL 71 (165)
Q Consensus 18 ~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l 71 (165)
-+|+++.-|+..+.+.+-+-+ .-+...|.-+|.|+||+|+..|+..++
T Consensus 201 ~d~~~sh~el~pl~ap~ipme------~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 201 IDGYLSHTELAPLRAPLIPME------HCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred ccccccccccccccCCcccHH------hhchhhhhcccCCCCCceeHHHhhccc
Confidence 467888877766555443332 456677888899999999999998876
No 134
>KOG1264|consensus
Probab=76.17 E-value=6.3 Score=34.03 Aligned_cols=103 Identities=14% Similarity=0.213 Sum_probs=63.2
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHH-HHHHHHHhcCCC-CcccHHHHHHHHHhhhcCCCCCCHHHHHHHH--
Q psy13766 49 EAFQLFDNRGDNKIHVSQIGNVLRALGQNPTEC-DVKKYSQQHKSD-ERISFEVFLPIYQAISKGRSADTADDFIEGL-- 124 (165)
Q Consensus 49 ~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~-~~~~~~~~~d~~-g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f-- 124 (165)
.-+...|...-..|+..+++..|...++.++.. .+.+.+.....+ +.++|++|..++..++.......-......|
T Consensus 148 k~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~ 227 (1267)
T KOG1264|consen 148 KQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFIL 227 (1267)
T ss_pred hhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhhccccccHHHHHHHHHHHhhccchhhhhcccchhhh
Confidence 334455666667799999999998877766543 343555554445 8899999999988765433222111122222
Q ss_pred HhhCCCCCCcccHHHHHHHHHHhCCCC
Q psy13766 125 RHFDKDGNGFISSAELRHLLTTLGNFM 151 (165)
Q Consensus 125 ~~~D~~~~G~i~~~e~~~~l~~~~~~l 151 (165)
..-+...--.+++.+|+++|..-....
T Consensus 228 ~~~~~~d~~vV~~~ef~rFL~~~Q~e~ 254 (1267)
T KOG1264|consen 228 GNTDRPDASVVYLQEFQRFLIHEQQEH 254 (1267)
T ss_pred cCCCCccceEeeHHHHHHHHHhhhHHH
Confidence 222222234689999999997654433
No 135
>KOG2871|consensus
Probab=75.97 E-value=4.6 Score=31.42 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=44.3
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH-hcCCC--CcccHHHHHH
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQ-QHKSD--ERISFEVFLP 103 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~-~~d~~--g~isf~eF~~ 103 (165)
...+++.|..+|+.++|.|+..-++.++..++..+++...-.++. ..++. |.|-...|..
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 468999999999999999999999999999997777665444443 34444 5554454443
No 136
>KOG1265|consensus
Probab=74.47 E-value=62 Score=28.66 Aligned_cols=99 Identities=13% Similarity=0.141 Sum_probs=69.1
Q ss_pred hcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC---------CcccHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q psy13766 54 FDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD---------ERISFEVFLPIYQAISKGRSADTADDFIEGL 124 (165)
Q Consensus 54 ~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~---------g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f 124 (165)
+..+.+|+|....+.+.+.+ +-.+..+++.+....-. ...+|+-|..++..++ +..++..+|
T Consensus 157 mqvn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klc------pR~eie~iF 227 (1189)
T KOG1265|consen 157 MQVNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLC------PRPEIEEIF 227 (1189)
T ss_pred hcccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcC------CchhHHHHH
Confidence 35678899999888887754 22234555555554321 3467777887777743 467899999
Q ss_pred HhhCCCCCCcccHHHHHHHHHHhC----------CCCCHHHHHHHHH
Q psy13766 125 RHFDKDGNGFISSAELRHLLTTLG----------NFMSWVNLVEKEV 161 (165)
Q Consensus 125 ~~~D~~~~G~i~~~e~~~~l~~~~----------~~ls~~e~~~~~~ 161 (165)
..+--++.-++|.++|..++..-. ..++++.+..+.-
T Consensus 228 ~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~lie 274 (1189)
T KOG1265|consen 228 RKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIE 274 (1189)
T ss_pred HHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHH
Confidence 999999989999999999997653 2456666655543
No 137
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=74.28 E-value=17 Score=22.06 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=40.2
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHh
Q psy13766 61 KIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRH 126 (165)
Q Consensus 61 ~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~ 126 (165)
.||..|+.+.-...+..++...++.+......+ .-.+-++=..++..+...........+..+|..
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~q 81 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQ 81 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 578888888888888888888888888776444 444444444555544332222223344445543
No 138
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=73.63 E-value=19 Score=22.47 Aligned_cols=64 Identities=16% Similarity=0.032 Sum_probs=39.6
Q ss_pred CHHHHHHHHHhcCCCCcccHHHHHHHHHhhhcCCCCCCHHHHHHHH---HhhCCCCCCcccHHHHHHHHHHhC
Q psy13766 79 TECDVKKYSQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGL---RHFDKDGNGFISSAELRHLLTTLG 148 (165)
Q Consensus 79 ~~~~~~~~~~~~d~~g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f---~~~D~~~~G~i~~~e~~~~l~~~~ 148 (165)
....++.-|..+..+|.+....|..++.. . ...+=...+| ..--.-..+.|+.+|+++++..+.
T Consensus 28 ~W~~VE~RFd~La~dG~L~rs~Fg~CIGM--~----dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 28 GWKEVEKRFDKLAKDGLLPRSDFGECIGM--K----DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp -HHHHHHHHHHH-BTTBEEGGGHHHHHT--------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcCCcccHHHHHHhcCC--c----ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 46667788888877899999999988865 1 2223233333 222233467899999999987763
No 139
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=71.66 E-value=21 Score=21.94 Aligned_cols=62 Identities=23% Similarity=0.333 Sum_probs=36.3
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc-------CC----CCCHHHHHHHHHhcCCCCcccHHHHHHHHHh
Q psy13766 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRAL-------GQ----NPTECDVKKYSQQHKSDERISFEVFLPIYQA 107 (165)
Q Consensus 45 ~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l-------~~----~~~~~~~~~~~~~~d~~g~isf~eF~~~~~~ 107 (165)
.+++.+|+.+ .|.+|.++...+...|+.+ |. ...+.-++.-|........|+-++|+..+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHh
Confidence 5788899887 6788999999888877532 21 1245556666666532366778888777754
No 140
>PLN02222 phosphoinositide phospholipase C 2
Probab=70.98 E-value=26 Score=29.28 Aligned_cols=60 Identities=13% Similarity=0.259 Sum_probs=40.4
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhcCC--C-CcccHHHHHHHHH
Q psy13766 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQ--NPTECDVKKYSQQHKS--D-ERISFEVFLPIYQ 106 (165)
Q Consensus 45 ~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~--~~~~~~~~~~~~~~d~--~-g~isf~eF~~~~~ 106 (165)
.++..+|..+.. ++.++.++|...|..... ..+.+.+..++..+.. . +.++++.|..++.
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 477778877753 367888888887776633 2456667777776533 1 5678888777773
No 141
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=70.15 E-value=5.9 Score=23.00 Aligned_cols=55 Identities=13% Similarity=0.111 Sum_probs=33.8
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcC-----CC-CcccHHHHHH
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHK-----SD-ERISFEVFLP 103 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d-----~~-g~isf~eF~~ 103 (165)
.+.+...|+.+ .++.++|+..++++.|..- .-+.+...+..+. .. |..+|..|+.
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe----~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLTPE----QAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-CC----CHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcCcH----HHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 46789999999 5677999999999986421 1122222333332 22 6678888763
No 142
>PLN02230 phosphoinositide phospholipase C 4
Probab=69.38 E-value=30 Score=29.01 Aligned_cols=29 Identities=7% Similarity=0.241 Sum_probs=14.1
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc
Q psy13766 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRAL 74 (165)
Q Consensus 45 ~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l 74 (165)
.++..+|..|..++ +.++.++|...|...
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~ 57 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEE 57 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHh
Confidence 45555555553222 455555555555443
No 143
>KOG0998|consensus
Probab=69.29 E-value=2.3 Score=36.91 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=51.7
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHh
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQA 107 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~ 107 (165)
...+..+|...|.+.+|.|+..+....+.. ..++...+..++...+.. |.+++++|.-.+..
T Consensus 282 ~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 282 KQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 567788999999999999999999988876 556677788888888776 99999998876654
No 144
>PLN02228 Phosphoinositide phospholipase C
Probab=69.23 E-value=32 Score=28.68 Aligned_cols=61 Identities=8% Similarity=0.085 Sum_probs=46.9
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCC------CcccHHHHHHHHH
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQ--NPTECDVKKYSQQHKSD------ERISFEVFLPIYQ 106 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~--~~~~~~~~~~~~~~d~~------g~isf~eF~~~~~ 106 (165)
..++..+|..+..+ +.++.++|...|+.... ..+...+..++..+... |.++.+.|..++.
T Consensus 23 ~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 23 PVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred cHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 36889999888643 57999999999987632 35667788888887532 6799999998885
No 145
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=69.04 E-value=7.8 Score=25.37 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=21.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13766 120 FIEGLRHFDKDGNGFISSAELRHLLTTL 147 (165)
Q Consensus 120 ~~~~f~~~D~~~~G~i~~~e~~~~l~~~ 147 (165)
+..++..||+.++|.|+.-.|+-.+..+
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 4567899999999999999999887654
No 146
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=68.22 E-value=25 Score=21.59 Aligned_cols=81 Identities=9% Similarity=-0.013 Sum_probs=47.5
Q ss_pred CCCcccHHHHHHHHHHcC--CCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCC
Q psy13766 58 GDNKIHVSQIGNVLRALG--QNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNG 133 (165)
Q Consensus 58 ~~g~i~~~e~~~~l~~l~--~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G 133 (165)
.||.++..|...+-+.+. ..++..+...++..+... ...++.+|...+.... .......-+..+|...-. ||
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~r~~~l~~L~~vA~A--DG 87 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHF--DYEERLELVEALWEVAYA--DG 87 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHh--cC
Confidence 368898888777655432 356677777777666443 5678888887765521 111222334445555433 35
Q ss_pred cccHHHHHH
Q psy13766 134 FISSAELRH 142 (165)
Q Consensus 134 ~i~~~e~~~ 142 (165)
.++..|-.-
T Consensus 88 ~~~~~E~~~ 96 (104)
T cd07313 88 ELDEYEEHL 96 (104)
T ss_pred CCCHHHHHH
Confidence 577766543
No 147
>PLN02222 phosphoinositide phospholipase C 2
Probab=67.91 E-value=27 Score=29.15 Aligned_cols=14 Identities=7% Similarity=0.064 Sum_probs=6.9
Q ss_pred CCcchHHHHHHHhc
Q psy13766 19 NSKLQFSQVLFKMY 32 (165)
Q Consensus 19 ~g~i~~~e~~~~~~ 32 (165)
++.++.++|..++.
T Consensus 37 ~~~mt~~~l~~FL~ 50 (581)
T PLN02222 37 NGVMTVDHLHRFLI 50 (581)
T ss_pred CCCcCHHHHHHHHH
Confidence 44455555544443
No 148
>KOG3449|consensus
Probab=67.60 E-value=29 Score=22.08 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=39.6
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCcccHHHHH
Q psy13766 49 EAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFL 102 (165)
Q Consensus 49 ~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~g~isf~eF~ 102 (165)
..|-.+..-++...+..+++.+|...|.....+.++.++..+. |+ +.+|.+
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~--GK-~i~ElI 55 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK--GK-DIEELI 55 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc--CC-CHHHHH
Confidence 3444556666777899999999999999999999999998875 43 555544
No 149
>PLN02230 phosphoinositide phospholipase C 4
Probab=66.43 E-value=30 Score=28.98 Aligned_cols=68 Identities=10% Similarity=0.092 Sum_probs=38.2
Q ss_pred CHHHHHHHHHhcCCC-CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhh-------CCCCCCcccHHHHHHHHHH
Q psy13766 79 TECDVKKYSQQHKSD-ERISFEVFLPIYQAISKGRSADTADDFIEGLRHF-------DKDGNGFISSAELRHLLTT 146 (165)
Q Consensus 79 ~~~~~~~~~~~~d~~-g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~-------D~~~~G~i~~~e~~~~l~~ 146 (165)
+..++..+|..|..+ +.++.++|..++..-.........+.+..++..+ ..-+.+.++++.|..+|-+
T Consensus 27 p~~ei~~lf~~~s~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 556677777777544 6777777777776633212122334444444322 1123445777777776654
No 150
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=65.00 E-value=12 Score=22.19 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=21.5
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy13766 134 FISSAELRHLLTTLGNFMSWVNLVEKEV 161 (165)
Q Consensus 134 ~i~~~e~~~~l~~~~~~ls~~e~~~~~~ 161 (165)
.|++..++++++.+| ||+.+++.++.
T Consensus 8 ~VP~~~wk~F~R~LG--Lsdn~Ie~~E~ 33 (77)
T cd08815 8 AVPARRWKEFVRTLG--LREAEIEAVEL 33 (77)
T ss_pred cCChHHHHHHHHHcC--CcHhHHHHHHh
Confidence 488899999999999 68888877764
No 151
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=64.46 E-value=15 Score=21.34 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13766 117 ADDFIEGLRHFDKDGNGFISSAELRHLLTT 146 (165)
Q Consensus 117 ~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~ 146 (165)
...+..+...|+.=+.+.|+.++|-+.++.
T Consensus 24 ~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 24 PSKMDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 344444445554445556666666555554
No 152
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=64.45 E-value=5.9 Score=22.55 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=20.4
Q ss_pred HhhCCCCCCcccHHHHHHHHHHh
Q psy13766 125 RHFDKDGNGFISSAELRHLLTTL 147 (165)
Q Consensus 125 ~~~D~~~~G~i~~~e~~~~l~~~ 147 (165)
+.+|+..+.+||++++++++...
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g 32 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREG 32 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCC
Confidence 46899999999999999999765
No 153
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=64.16 E-value=18 Score=22.21 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=11.4
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13766 119 DFIEGLRHFDKDGNGFISSAELRHLLTT 146 (165)
Q Consensus 119 ~~~~~f~~~D~~~~G~i~~~e~~~~l~~ 146 (165)
+.+.+|+.+ .|.+|.++...|..+|..
T Consensus 4 KyRylFsli-sd~~g~~~~~~l~~lL~d 30 (90)
T PF09069_consen 4 KYRYLFSLI-SDSNGCMDQRKLGLLLHD 30 (90)
T ss_dssp HHHHHHHHH-S-TTS-B-HHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCCCcHHHHHHHHHH
Confidence 344455444 244555555555444443
No 154
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=63.45 E-value=10 Score=21.44 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=20.4
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy13766 134 FISSAELRHLLTTLGNFMSWVNLVEKE 160 (165)
Q Consensus 134 ~i~~~e~~~~l~~~~~~ls~~e~~~~~ 160 (165)
.|+.++|..+|+....-+|.++++..+
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 378888888888888878888777654
No 155
>PF05819 NolX: NolX protein; InterPro: IPR008718 This family consists of Rhizobium NolX and Xanthomonas HrpF proteins. The interaction between the plant pathogen Xanthomonas campestris pv. vesicatoria (strain 85-10) and its host plants is controlled by hrp genes (hypersensitive reaction and pathogenicity), which encode a type III protein secretion system. Among type III-secreted proteins are avirulence proteins, effectors involved in the induction of plant defence reactions. HrpF is dispensable for protein secretion but required for AvrBs3 recognition in planta, is thought to function as a translocator of effector proteins into the host cell []. NolX, a Glycine max (Soybean) cultivar specificity protein, is secreted by a type III secretion system (TTSS) and shows homology to HrpF. It is not known whether NolX functions at the bacterium-plant interface or acts inside the host cell. NolX is expressed in planta only during the early stages of nodule development [].; GO: 0009877 nodulation
Probab=62.26 E-value=88 Score=25.72 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=46.8
Q ss_pred HHHHHHhcCCC-CcccHHHHHHHHHhhhcCCCCCCHHHHH---------HHHHhhCCCCCCcccHHHHHHHHHHhCCCCC
Q psy13766 83 VKKYSQQHKSD-ERISFEVFLPIYQAISKGRSADTADDFI---------EGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152 (165)
Q Consensus 83 ~~~~~~~~d~~-g~isf~eF~~~~~~~~~~~~~~~~~~~~---------~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls 152 (165)
++++|..-|.= ..++.+.|..++..-.... ..+.+.+. ..|+.+-...++.|+.++|.+...+-. +||
T Consensus 370 ~RELYrYSdyLPK~L~~~~f~~IVdG~s~tg-KcPPQViAAAqyF~~hpd~W~~l~~g~~~~v~k~dflq~ass~m-~LT 447 (624)
T PF05819_consen 370 MRELYRYSDYLPKNLSLEDFKQIVDGDSKTG-KCPPQVIAAAQYFVDHPDEWKQLYGGPSDKVSKEDFLQVASSSM-HLT 447 (624)
T ss_pred HHHHHHhhhccccccCHHHHHhHhcCccccC-CCCHHHHHHHHHHHhChHHHHHhcCCCccccchhHHHHHHHhhc-ccC
Confidence 34444443332 6788888887775422222 22223222 235555335568899999988776644 489
Q ss_pred HHHHHHHHHh
Q psy13766 153 WVNLVEKEVI 162 (165)
Q Consensus 153 ~~e~~~~~~~ 162 (165)
..|.+.+..|
T Consensus 448 ~~ElkTL~Ti 457 (624)
T PF05819_consen 448 APELKTLDTI 457 (624)
T ss_pred hHHHHHHHHh
Confidence 9998888766
No 156
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=61.35 E-value=22 Score=18.50 Aligned_cols=30 Identities=10% Similarity=0.399 Sum_probs=22.0
Q ss_pred HHHHHHHhhhhcC--CCCCcccHHHHHHHHHH
Q psy13766 44 IDEYLEAFQLFDN--RGDNKIHVSQIGNVLRA 73 (165)
Q Consensus 44 ~~~l~~~F~~~D~--d~~g~i~~~e~~~~l~~ 73 (165)
+..+-.+|..|.. .....++..||+..+..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 5667788888862 23558999999998864
No 157
>PHA02105 hypothetical protein
Probab=60.90 E-value=18 Score=20.06 Aligned_cols=47 Identities=11% Similarity=-0.039 Sum_probs=31.1
Q ss_pred cccHHHHHHHHHHcC---CCCCHHHHHHHHHhcCCC----CcccHHHHHHHHHh
Q psy13766 61 KIHVSQIGNVLRALG---QNPTECDVKKYSQQHKSD----ERISFEVFLPIYQA 107 (165)
Q Consensus 61 ~i~~~e~~~~l~~l~---~~~~~~~~~~~~~~~d~~----g~isf~eF~~~~~~ 107 (165)
+++.+|+..++..-. .++..+.+..+-..+... -++||+||-.++-.
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~ 57 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPF 57 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccccc
Confidence 467788888876543 345666666665555544 46899999887743
No 158
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=60.29 E-value=13 Score=26.34 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=31.7
Q ss_pred HhhhhcCCCCCCcchHHHHHHHhcCCCccc--------cccccHHHHHHHhhhhcCCCCCcc
Q psy13766 9 MLKSWCPTLKNSKLQFSQVLFKMYGYEPVN--------KVMTSIDEYLEAFQLFDNRGDNKI 62 (165)
Q Consensus 9 ~~~~~~d~~~~g~i~~~e~~~~~~~~~~~~--------~~~~~~~~l~~~F~~~D~d~~g~i 62 (165)
.|+.+.+--..|.++|..++..|++.-.+. +|.+....+-..-+.||++..|.|
T Consensus 165 ~L~eMK~Lad~geldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I 226 (246)
T PF10897_consen 165 NLGEMKRLADKGELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPI 226 (246)
T ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCce
Confidence 333333333447788888888876644332 333444455556677788777755
No 159
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=60.26 E-value=19 Score=20.54 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=24.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy13766 132 NGFISSAELRHLLTTLGNFMSWVNLVEKE 160 (165)
Q Consensus 132 ~G~i~~~e~~~~l~~~~~~ls~~e~~~~~ 160 (165)
+--|+.+-++.++..+|.+.|+.++.+.-
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m 57 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMM 57 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHH
Confidence 34599999999999999999999988764
No 160
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=58.72 E-value=15 Score=21.83 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=12.7
Q ss_pred HHHHHHHHhCCCCCHHHHHHHH
Q psy13766 139 ELRHLLTTLGNFMSWVNLVEKE 160 (165)
Q Consensus 139 e~~~~l~~~~~~ls~~e~~~~~ 160 (165)
|+..+|+.+|.+||++|..=+.
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~ 42 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLE 42 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHH
Confidence 4566788889999998876554
No 161
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=55.98 E-value=52 Score=21.11 Aligned_cols=50 Identities=10% Similarity=0.170 Sum_probs=37.5
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCcccHHHHHH
Q psy13766 51 FQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLP 103 (165)
Q Consensus 51 F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~g~isf~eF~~ 103 (165)
|..+..-++..++..++..+|...|..+....+..++..+. ..+.++.+.
T Consensus 9 YlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~---GKdI~ELIa 58 (112)
T PTZ00373 9 YLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE---GKTPHELIA 58 (112)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc---CCCHHHHHH
Confidence 33344455667999999999999999999999999888774 355555543
No 162
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=54.95 E-value=24 Score=21.07 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=21.4
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy13766 134 FISSAELRHLLTTLGNFMSWVNLVEKEV 161 (165)
Q Consensus 134 ~i~~~e~~~~l~~~~~~ls~~e~~~~~~ 161 (165)
.+++.+++++.+.+| ||+.+++.++.
T Consensus 8 ~v~~~~wk~~~R~LG--lse~~Id~ie~ 33 (80)
T cd08313 8 EVPPRRWKEFVRRLG--LSDNEIERVEL 33 (80)
T ss_pred hCCHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 478888999999999 78888887765
No 163
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=52.17 E-value=52 Score=19.95 Aligned_cols=68 Identities=6% Similarity=0.110 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC
Q psy13766 77 NPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFM 151 (165)
Q Consensus 77 ~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~l 151 (165)
.++..-+..+....... ..-.|++....+..+.. +-+..+-....-.+--+|+.+|+..+++..|.++
T Consensus 13 gi~k~~I~RLarr~GvkRIS~d~y~e~~~~l~~~l~-------~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~~ 82 (85)
T cd00076 13 GITKPAIRRLARRGGVKRISGGVYDEVRNVLKSYLE-------DVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTL 82 (85)
T ss_pred cCCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCCc
Confidence 35666666666665433 22336666665554332 3344544444445556699999999999998765
No 164
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=51.92 E-value=16 Score=23.51 Aligned_cols=29 Identities=14% Similarity=0.332 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHhcCCC--CcccHHHHHHHHH
Q psy13766 78 PTECDVKKYSQQHKSD--ERISFEVFLPIYQ 106 (165)
Q Consensus 78 ~~~~~~~~~~~~~d~~--g~isf~eF~~~~~ 106 (165)
++++..+.++..+-.| |.+.|.+|+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 6788899999999888 9999999987664
No 165
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=51.15 E-value=19 Score=23.49 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=49.8
Q ss_pred CCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCC
Q psy13766 58 GDNKIHVSQIGNVLRAL--GQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNG 133 (165)
Q Consensus 58 ~~g~i~~~e~~~~l~~l--~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G 133 (165)
.||.++..|...+...+ ...++......+...++.- ...++.+|+..+... ........-+..++...-.||
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~r~~ll~~l~~ia~ADG-- 111 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDS--LSPEEREDLLRMLIAIAYADG-- 111 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS----HHHHHHHHHHHHHHCTCTT--
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHh--hchHHHHHHHHHHHHHHhcCC--
Confidence 47899999988877655 3445566667777766544 567888887666441 111111233555666666654
Q ss_pred cccHHHH---HHHHHHhCCCCCHHHHHH
Q psy13766 134 FISSAEL---RHLLTTLGNFMSWVNLVE 158 (165)
Q Consensus 134 ~i~~~e~---~~~l~~~~~~ls~~e~~~ 158 (165)
.++..|- ..+...+| ++++++..
T Consensus 112 ~~~~~E~~~l~~ia~~L~--i~~~~~~~ 137 (140)
T PF05099_consen 112 EISPEEQEFLRRIAEALG--ISEEDFQR 137 (140)
T ss_dssp C-SCCHHHHHHHHHHHCT--S-SS----
T ss_pred CCCHHHHHHHHHHHHHcC--CCHHHHhc
Confidence 4655443 33444555 45555544
No 166
>KOG0506|consensus
Probab=50.36 E-value=1.3e+02 Score=24.78 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=44.9
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhc---CC----C---CcccHHHHHHHHH
Q psy13766 49 EAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQH---KS----D---ERISFEVFLPIYQ 106 (165)
Q Consensus 49 ~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~---d~----~---g~isf~eF~~~~~ 106 (165)
-+|..|....++.++..-|-.+|+..|+.-+...++.++..+ +. + +.++-+.|..++.
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 467777666679999999999999999998888887776643 32 2 6788888887764
No 167
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=49.32 E-value=36 Score=24.69 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=30.8
Q ss_pred hCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy13766 127 FDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEV 161 (165)
Q Consensus 127 ~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~~~~ 161 (165)
.=-+++|.+.+..+...+.++...|+..|+.++..
T Consensus 160 ~vG~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~ 194 (224)
T PF13829_consen 160 IVGNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNK 194 (224)
T ss_pred EecCCCCceeHHHHHHHHHhCCccCCHHHHHHHHH
Confidence 34578999999999999999999999999988753
No 168
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=48.94 E-value=24 Score=19.67 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=33.9
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCcccH
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISF 98 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~g~isf 98 (165)
...++.+|.... ..+.++..++...| .++...+..++..+...|.|.+
T Consensus 7 e~YL~~Iy~l~~--~~~~v~~~~iA~~L-----~vs~~tvt~ml~~L~~~GlV~~ 54 (60)
T PF01325_consen 7 EDYLKAIYELSE--EGGPVRTKDIAERL-----GVSPPTVTEMLKRLAEKGLVEY 54 (60)
T ss_dssp HHHHHHHHHHHH--CTSSBBHHHHHHHH-----TS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc--CCCCccHHHHHHHH-----CCChHHHHHHHHHHHHCCCEEe
Confidence 467788887665 67789999999988 4677777777776654455544
No 169
>KOG4070|consensus
Probab=48.00 E-value=75 Score=21.62 Aligned_cols=84 Identities=13% Similarity=0.196 Sum_probs=45.2
Q ss_pred HHHHHHhhhh----cCCCCC-cccHHHHHHHHHHcC----CCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhc--C
Q psy13766 45 DEYLEAFQLF----DNRGDN-KIHVSQIGNVLRALG----QNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISK--G 111 (165)
Q Consensus 45 ~~l~~~F~~~----D~d~~g-~i~~~e~~~~l~~l~----~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~--~ 111 (165)
..+...|..| |+..+| .++-..+..++...+ ..++.-.....|..+... +.++|++|...+..+.. -
T Consensus 12 a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~ 91 (180)
T KOG4070|consen 12 AGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRF 91 (180)
T ss_pred hhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhhh
Confidence 3444444444 333344 456666777776553 334555555666555333 78999999666654431 1
Q ss_pred CCCCCHHHHHHHHHhhC
Q psy13766 112 RSADTADDFIEGLRHFD 128 (165)
Q Consensus 112 ~~~~~~~~~~~~f~~~D 128 (165)
.....++.+..+...+.
T Consensus 92 k~Ks~ee~l~~I~~lla 108 (180)
T KOG4070|consen 92 KGKSKEEALDAICQLLA 108 (180)
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 12333455555555543
No 170
>PRK00523 hypothetical protein; Provisional
Probab=47.99 E-value=38 Score=19.82 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=23.8
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy13766 133 GFISSAELRHLLTTLGNFMSWVNLVEKE 160 (165)
Q Consensus 133 G~i~~~e~~~~l~~~~~~ls~~e~~~~~ 160 (165)
--|+.+-++.++..+|.+.|+.++++.-
T Consensus 38 Ppine~mir~M~~QMGqKPSekki~Q~m 65 (72)
T PRK00523 38 PPITENMIRAMYMQMGRKPSESQIKQVM 65 (72)
T ss_pred cCCCHHHHHHHHHHhCCCccHHHHHHHH
Confidence 4589999999999999999998887653
No 171
>PTZ00015 histone H4; Provisional
Probab=47.79 E-value=69 Score=20.16 Aligned_cols=68 Identities=7% Similarity=0.084 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC
Q psy13766 77 NPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFM 151 (165)
Q Consensus 77 ~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~l 151 (165)
.++..-+..+....... ..--|++....+..+.. +-+..+-...+-.+--+|+.+|+..+++..|.++
T Consensus 30 gI~k~~IrRLarr~GvkRIS~d~y~e~r~vle~~l~-------~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~~~ 99 (102)
T PTZ00015 30 GITKGAIRRLARRGGVKRISGDIYEEVRGVLKAFLE-------NVVRDSTAYTEYARRKTVTAMDVVYALKRQGRTL 99 (102)
T ss_pred CCCHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCC
Confidence 34555555665554433 23345555555544322 3344444444444555699999999999988765
No 172
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=46.79 E-value=40 Score=21.49 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13766 117 ADDFIEGLRHFDKDGNGFISSAELRHLLT 145 (165)
Q Consensus 117 ~~~~~~~f~~~D~~~~G~i~~~e~~~~l~ 145 (165)
.++++.+|...+ +.++-+++.+++.
T Consensus 81 ~dElrai~~~~~----~~~~~e~l~~ILd 105 (112)
T PRK14981 81 RDELRAIFAKER----YTLSPEELDEILD 105 (112)
T ss_pred HHHHHHHHHHhc----cCCCHHHHHHHHH
Confidence 444555554442 2344444444443
No 173
>KOG4403|consensus
Probab=46.45 E-value=68 Score=25.80 Aligned_cols=103 Identities=14% Similarity=0.032 Sum_probs=58.4
Q ss_pred CCCCcccHHHHHHHHHHc---C-CCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCC
Q psy13766 57 RGDNKIHVSQIGNVLRAL---G-QNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKD 130 (165)
Q Consensus 57 d~~g~i~~~e~~~~l~~l---~-~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~ 130 (165)
.++...+..||+.+.... + -.++-+-++.+-..+|.| |.|+.+|=-.++..=++. ......=...|.-
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky--~~~~~kr~~~fH~---- 113 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKY--RDSTRKRSEKFHG---- 113 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhc--ccchhhhhhhccC----
Confidence 455556666665543322 1 124444566666677666 888877766666431111 1111222225543
Q ss_pred CCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhhcC
Q psy13766 131 GNGFISSAELRHLLTTL-GNFMSWVNLVEKEVIWVN 165 (165)
Q Consensus 131 ~~G~i~~~e~~~~l~~~-~~~ls~~e~~~~~~~~~~ 165 (165)
.|..||.++++..+..- -...|.++.-+-...+|+
T Consensus 114 dD~~ItVedLWeaW~~Sev~nWT~e~tvqWLi~~Ve 149 (575)
T KOG4403|consen 114 DDKHITVEDLWEAWKESEVHNWTNERTVQWLINDVE 149 (575)
T ss_pred CccceeHHHHHHHHHhhhhhcchHHHHHHHHHHhcc
Confidence 45679999998877654 445788877776666553
No 174
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=45.89 E-value=77 Score=20.17 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=38.7
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCcccHHHHHHHH
Q psy13766 51 FQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLPIY 105 (165)
Q Consensus 51 F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~g~isf~eF~~~~ 105 (165)
|..+...++..++.+++..+|...|..+....+..++..+. ..+.++.+.-.
T Consensus 7 ylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~---GKdi~eLIa~g 58 (109)
T cd05833 7 YLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE---GKDVEELIAAG 58 (109)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc---CCCHHHHHHHh
Confidence 33344456668999999999999999999998888887764 35556655433
No 175
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=45.68 E-value=55 Score=25.28 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=41.9
Q ss_pred HHHHHH--HcCCCCCHHHHHHHHHhcCCCCcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy13766 67 IGNVLR--ALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLL 144 (165)
Q Consensus 67 ~~~~l~--~l~~~~~~~~~~~~~~~~d~~g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l 144 (165)
|...+. +.|..-....+...... |.+|.+|=+..+.. .+...+.+.+...++.++ ||.+||..++
T Consensus 276 ~~~y~~~~KfG~~~~~~~~s~~IR~----G~itReeal~~v~~---~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 276 FHDYLKYLKFGFGRATDHASIDIRS----GRITREEAIELVKE---YDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HHHHHHHhhcCCCcCchHHHHHHHc----CCCCHHHHHHHHHH---hcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 444443 34666555544444432 88999997777766 233444577888888888 7788887764
No 176
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=45.29 E-value=60 Score=18.71 Aligned_cols=32 Identities=3% Similarity=0.210 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Q psy13766 62 IHVSQIGNVLRALGQNPTECDVKKYSQQHKSD 93 (165)
Q Consensus 62 i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~ 93 (165)
++-.++..++...|..++..++..++..-+..
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~ 45 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEK 45 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCc
Confidence 55668888898889999999999998876544
No 177
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=45.10 E-value=40 Score=21.98 Aligned_cols=9 Identities=0% Similarity=-0.093 Sum_probs=4.2
Q ss_pred CCCHHHHHH
Q psy13766 150 FMSWVNLVE 158 (165)
Q Consensus 150 ~ls~~e~~~ 158 (165)
+++++++..
T Consensus 98 ~l~dddi~~ 106 (122)
T PF06648_consen 98 HLTDDDISY 106 (122)
T ss_pred cCCcccHHH
Confidence 455554433
No 178
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=44.88 E-value=74 Score=19.64 Aligned_cols=88 Identities=13% Similarity=0.208 Sum_probs=51.6
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCcccHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q psy13766 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGL 124 (165)
Q Consensus 45 ~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f 124 (165)
..+...|..+- ..|...+++.+.+.+| +++.+|+.+-..+. + . .+....++
T Consensus 4 ~~l~~~f~~i~----~~V~~~~Wk~laR~LG--Lse~~I~~i~~~~~--~--------------------~-~eq~~qmL 54 (96)
T cd08315 4 ETLRRSFDHFI----KEVPFDSWNRLMRQLG--LSENEIDVAKANER--V--------------------T-REQLYQML 54 (96)
T ss_pred hHHHHHHHHHH----HHCCHHHHHHHHHHcC--CCHHHHHHHHHHCC--C--------------------C-HHHHHHHH
Confidence 45556665542 2466677777777666 55666666554432 1 1 23333333
Q ss_pred HhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy13766 125 RHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEV 161 (165)
Q Consensus 125 ~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~~~~ 161 (165)
..|-...-..-|+..+.+.|..++.+...+.++...+
T Consensus 55 ~~W~~~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~ 91 (96)
T cd08315 55 LTWVNKTGRKASVNTLLDALEAIGLRLAKESIQDELI 91 (96)
T ss_pred HHHHHhhCCCcHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 3333222224568889999999998888888876654
No 179
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=44.35 E-value=28 Score=22.74 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=18.7
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHc
Q psy13766 49 EAFQLFDNRGDNKIHVSQIGNVLRAL 74 (165)
Q Consensus 49 ~~F~~~D~d~~g~i~~~e~~~~l~~l 74 (165)
=++..||++++|.|+.-.++.+|..+
T Consensus 101 ~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 101 WLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 35678899999999999999887654
No 180
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=43.89 E-value=96 Score=20.69 Aligned_cols=34 Identities=9% Similarity=-0.098 Sum_probs=22.7
Q ss_pred CCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHhhc
Q psy13766 131 GNGFISSAELRHLLTT-LGNFMSWVNLVEKEVIWV 164 (165)
Q Consensus 131 ~~G~i~~~e~~~~l~~-~~~~ls~~e~~~~~~~~~ 164 (165)
..+.|+.+-|+.+|+. ++..+.++-+..+..-|.
T Consensus 45 ~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 45 PEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQ 79 (138)
T ss_dssp ETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS-
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 3457999999999997 577788887777766553
No 181
>KOG1908|consensus
Probab=43.74 E-value=95 Score=20.56 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=32.5
Q ss_pred CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy13766 94 ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEVIW 163 (165)
Q Consensus 94 g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~~~~~~ 163 (165)
..|+-+|.+..+...+......+...+..-...|-.-++-.+..-+++ |.+++-.+++.++-||
T Consensus 73 rvids~Eii~AYkeACQk~nCap~aalekQig~Fh~~~d~R~d~L~LK------GEkl~haq~EALEEiF 136 (165)
T KOG1908|consen 73 RVIDSDEIIGAYKEACQKLNCAPIAALEKQIGEFHDLGDHRLDCLDLK------GEKLDHAQCEALEEIF 136 (165)
T ss_pred ccccHHHHHHHHHHHHHHccccchHHHHHHHHHHhcCcchhHHHHhcc------cccccHHHHHHHHHHH
Confidence 567777766555433322222233334443344433444334433333 6777777777777665
No 182
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=42.87 E-value=77 Score=19.25 Aligned_cols=68 Identities=12% Similarity=0.129 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHhcCCC-CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q psy13766 78 PTECDVKKYSQQHKSD-ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148 (165)
Q Consensus 78 ~~~~~~~~~~~~~d~~-g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~ 148 (165)
++..++.......-.+ -.|.+.+|...+...+.. ........+=..+|.-.+|+||.=||--+.+=++
T Consensus 4 ITK~eA~~FW~~~Fg~r~IVPW~~F~~~L~~~h~~---~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFq 72 (85)
T PF02761_consen 4 ITKAEAAEFWKTSFGKRTIVPWSEFRQALQKVHPI---SSGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQ 72 (85)
T ss_dssp -SSHHHHHHHHHHHTT-SEEEHHHHHHHHHHHS-----SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT-
T ss_pred eccHHHHHHHHHHCCCCeEeeHHHHHHHHHHhcCC---CchHHHHHHHHHHhcccCCccchhhhHHHHHHHh
Confidence 4455555665544333 568888888888775542 2223333444558888888888877765554433
No 183
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=42.35 E-value=32 Score=16.59 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=12.3
Q ss_pred CCCcccHHHHHHHHHHh
Q psy13766 131 GNGFISSAELRHLLTTL 147 (165)
Q Consensus 131 ~~G~i~~~e~~~~l~~~ 147 (165)
+.|.|+.+++..+....
T Consensus 1 ~~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 1 SSGTISKEEYLDMASRV 17 (33)
T ss_pred CCceecHHHHHHHHHHH
Confidence 35778888888777654
No 184
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=42.11 E-value=49 Score=23.11 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=20.8
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy13766 129 KDGNGFISSAELRHLLTTLGNFMSWVNLVEK 159 (165)
Q Consensus 129 ~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~~ 159 (165)
.|.+|.+.++++...++.-+..+|.+++.++
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~v 58 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAV 58 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHH
Confidence 4667778777777777654555677766654
No 185
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=42.01 E-value=65 Score=19.12 Aligned_cols=41 Identities=15% Similarity=0.248 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC---CcccHHHHHHHH
Q psy13766 63 HVSQIGNVLRALGQNPTECDVKKYSQQHKSD---ERISFEVFLPIY 105 (165)
Q Consensus 63 ~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~---g~isf~eF~~~~ 105 (165)
...++...| .|...+.+.+...+..++.. +.++-++|+.++
T Consensus 43 ~i~~le~~L--~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEAL--IGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHH--TTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 355555555 37788888888888877544 677777777653
No 186
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=41.37 E-value=58 Score=22.84 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=25.4
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Q psy13766 55 DNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD 93 (165)
Q Consensus 55 D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~ 93 (165)
..+.+|+++.+++...+..-+..++.+++..+...-++.
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~ 64 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDKQ 64 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS-
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCCC
Confidence 457899999999999998877888999999998875544
No 187
>PRK01844 hypothetical protein; Provisional
Probab=40.70 E-value=57 Score=19.09 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=23.5
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy13766 133 GFISSAELRHLLTTLGNFMSWVNLVEKE 160 (165)
Q Consensus 133 G~i~~~e~~~~l~~~~~~ls~~e~~~~~ 160 (165)
--|+.+-++.++..+|.+.|+.++.+.-
T Consensus 37 Ppine~mir~Mm~QMGqkPSekki~Q~m 64 (72)
T PRK01844 37 PPINEQMLKMMMMQMGQKPSQKKINQMM 64 (72)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHH
Confidence 3589999999999999999998887653
No 188
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=40.51 E-value=41 Score=17.65 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=24.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHH
Q psy13766 118 DDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLV 157 (165)
Q Consensus 118 ~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~ 157 (165)
..++.-++.+ -+.+++..+.+..|..+|.++++
T Consensus 17 ~~l~~~l~~~-------~~~~e~~~lA~~~Gy~ft~~el~ 49 (49)
T PF07862_consen 17 PELREQLKAC-------QNPEEVVALAREAGYDFTEEELE 49 (49)
T ss_pred HHHHHHHHhc-------CCHHHHHHHHHHcCCCCCHHHhC
Confidence 4455555442 27888999999999999988763
No 189
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=40.47 E-value=23 Score=22.40 Aligned_cols=23 Identities=17% Similarity=0.507 Sum_probs=19.7
Q ss_pred HhhCCCCCCcccHHHHHHHHHHh
Q psy13766 125 RHFDKDGNGFISSAELRHLLTTL 147 (165)
Q Consensus 125 ~~~D~~~~G~i~~~e~~~~l~~~ 147 (165)
+.+|+..+.+||++++++++...
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g 32 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREG 32 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCC
Confidence 46899999999999999998765
No 190
>PF15337 Vasculin: Vascular protein family Vasculin-like 1
Probab=39.58 E-value=64 Score=19.91 Aligned_cols=12 Identities=25% Similarity=0.055 Sum_probs=7.2
Q ss_pred CCCHHHHHHHHH
Q psy13766 150 FMSWVNLVEKEV 161 (165)
Q Consensus 150 ~ls~~e~~~~~~ 161 (165)
+||++|++|+++
T Consensus 33 PlTEDElkEF~~ 44 (97)
T PF15337_consen 33 PLTEDELKEFQV 44 (97)
T ss_pred cCcHHHHHHHHH
Confidence 566666666554
No 191
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=39.25 E-value=85 Score=21.93 Aligned_cols=39 Identities=5% Similarity=-0.040 Sum_probs=31.4
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Q psy13766 55 DNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD 93 (165)
Q Consensus 55 D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~ 93 (165)
..|.+|+++.+++...++.-+..++.+.+.++...-|+.
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~ 65 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDKG 65 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCc
Confidence 357889999999999988666778999999888765543
No 192
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=39.09 E-value=88 Score=18.89 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=28.2
Q ss_pred CcccHHHHHHHHHhhhcCCCC-----------------CCHHHHHHHHHhhCCCCCCcccH
Q psy13766 94 ERISFEVFLPIYQAISKGRSA-----------------DTADDFIEGLRHFDKDGNGFISS 137 (165)
Q Consensus 94 g~isf~eF~~~~~~~~~~~~~-----------------~~~~~~~~~f~~~D~~~~G~i~~ 137 (165)
..++|++++.-+..+++.... ....++..+|+.+..+++..|++
T Consensus 18 ~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l~i 78 (83)
T cd06404 18 PSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNKDSELNI 78 (83)
T ss_pred CCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcCcccEEE
Confidence 457777777777665543211 13567888888888887766653
No 193
>KOG3866|consensus
Probab=39.05 E-value=40 Score=25.81 Aligned_cols=71 Identities=11% Similarity=0.072 Sum_probs=39.5
Q ss_pred HhhhhcCCCCCCcchHHHHHHHhcC----C-CccccccccHH-------HH-HHHhhhhcCCCCCcccHHHHHHHHHHcC
Q psy13766 9 MLKSWCPTLKNSKLQFSQVLFKMYG----Y-EPVNKVMTSID-------EY-LEAFQLFDNRGDNKIHVSQIGNVLRALG 75 (165)
Q Consensus 9 ~~~~~~d~~~~g~i~~~e~~~~~~~----~-~~~~~~~~~~~-------~l-~~~F~~~D~d~~g~i~~~e~~~~l~~l~ 75 (165)
-++-.+|.+++|.++-.|+-..++. + .+.. ..+... .+ ..+.+..|.|.+..|+.++|...-.+-.
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkN-eeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ke 326 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKN-EEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKE 326 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcc
Confidence 4556778899999988777555421 1 1110 001111 11 1345566777777777777777665544
Q ss_pred CCCCH
Q psy13766 76 QNPTE 80 (165)
Q Consensus 76 ~~~~~ 80 (165)
...+.
T Consensus 327 f~~p~ 331 (442)
T KOG3866|consen 327 FNPPK 331 (442)
T ss_pred cCCcc
Confidence 44443
No 194
>KOG4286|consensus
Probab=37.59 E-value=1.3e+02 Score=26.21 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=54.2
Q ss_pred hhhhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHH-------HHc------C-
Q psy13766 10 LKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVL-------RAL------G- 75 (165)
Q Consensus 10 ~~~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l-------~~l------~- 75 (165)
+.+++|+.++|+|.--+|...+.-++.-. ....+..+|+....+++..+ ...|...| +.+ |
T Consensus 475 llNvyD~~R~g~irvls~ki~~i~lck~~----leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGg 549 (966)
T KOG4286|consen 475 LLNVYDTGRTGRIRVLSFKIGIISLCKAH----LEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGG 549 (966)
T ss_pred HHHhcccCCCcceEEeeehhhHHHHhcch----hHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence 56899999999999888887765555543 24678899988765555432 44444433 332 2
Q ss_pred CCCCHHHHHHHHHhcCCC-CcccHHHHHHHHH
Q psy13766 76 QNPTECDVKKYSQQHKSD-ERISFEVFLPIYQ 106 (165)
Q Consensus 76 ~~~~~~~~~~~~~~~d~~-g~isf~eF~~~~~ 106 (165)
.++... ++.-|... .+ -.|++..|+..+.
T Consensus 550 sNveps-vrsCF~~v-~~~pei~~~~f~dw~~ 579 (966)
T KOG4286|consen 550 SNIEPS-VRSCFQFV-NNKPEIEAALFLDWMR 579 (966)
T ss_pred CCCChH-HHHHHHhc-CCCCcchHHHHHHHhc
Confidence 223322 23333322 22 5688888877664
No 195
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=37.49 E-value=62 Score=18.15 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=18.3
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHH
Q psy13766 135 ISSAELRHLLTTLGNFMSWVNLVE 158 (165)
Q Consensus 135 i~~~e~~~~l~~~~~~ls~~e~~~ 158 (165)
.+.+++..+.+..|..+|.+++..
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~ 48 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKE 48 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHH
Confidence 347788888888888888887754
No 196
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=37.24 E-value=53 Score=18.49 Aligned_cols=30 Identities=10% Similarity=0.020 Sum_probs=18.1
Q ss_pred CcccHHHHHHHHHHh-CCCCCHHHHHHHHHh
Q psy13766 133 GFISSAELRHLLTTL-GNFMSWVNLVEKEVI 162 (165)
Q Consensus 133 G~i~~~e~~~~l~~~-~~~ls~~e~~~~~~~ 162 (165)
..++.+|..+++..+ ...+++.|+-.+.+.
T Consensus 13 ~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~a 43 (66)
T PF02885_consen 13 EDLSREEAKAAFDAILDGEVSDAQIAAFLMA 43 (66)
T ss_dssp ----HHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 558899999988876 335777777666543
No 197
>KOG0039|consensus
Probab=36.98 E-value=83 Score=26.78 Aligned_cols=77 Identities=16% Similarity=0.224 Sum_probs=48.3
Q ss_pred CCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHc---CC-----CCCHHHHHHHHHhc
Q psy13766 19 NSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRAL---GQ-----NPTECDVKKYSQQH 90 (165)
Q Consensus 19 ~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l---~~-----~~~~~~~~~~~~~~ 90 (165)
+| ++++|+. ....+. ..+++..|..+|. .+|.++.+++..++... +. ....+....++...
T Consensus 2 ~~-~~~~~~~--~~~~~~-------d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (646)
T KOG0039|consen 2 EG-ISFQELK--ITDCSY-------DDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEEL 70 (646)
T ss_pred CC-cchhhhc--ccCCCh-------hHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhc
Confidence 46 8888887 322222 4588889988887 89999999988877543 11 12333344555555
Q ss_pred CCC--CcccHHHHHHHHH
Q psy13766 91 KSD--ERISFEVFLPIYQ 106 (165)
Q Consensus 91 d~~--g~isf~eF~~~~~ 106 (165)
+.+ |.+.+.++..++.
T Consensus 71 ~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 71 DPDHKGYITNEDLEILLL 88 (646)
T ss_pred cccccceeeecchhHHHH
Confidence 555 6666555554443
No 198
>KOG1954|consensus
Probab=36.85 E-value=41 Score=26.69 Aligned_cols=25 Identities=16% Similarity=0.030 Sum_probs=11.4
Q ss_pred CCHHHHHHHHHhcCCC--CcccHHHHH
Q psy13766 78 PTECDVKKYSQQHKSD--ERISFEVFL 102 (165)
Q Consensus 78 ~~~~~~~~~~~~~d~~--g~isf~eF~ 102 (165)
++...+-+++...|.+ |.++=+||.
T Consensus 474 lpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 474 LPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred CchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 3444444444444333 455555543
No 199
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=36.79 E-value=1.1e+02 Score=19.32 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=33.6
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCcccHHHHHHHH
Q psy13766 62 IHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLPIY 105 (165)
Q Consensus 62 i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~g~isf~eF~~~~ 105 (165)
++.+++..+|...|..+....+..++..+. ..+.++.+.-.
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa---Gk~V~eli~~g 57 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN---GKNIDEVISKG 57 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 999999999999999999999999988863 35666666444
No 200
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=36.66 E-value=54 Score=23.01 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=17.1
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy13766 128 DKDGNGFISSAELRHLLTTLGNFMSWVNLVEK 159 (165)
Q Consensus 128 D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~~ 159 (165)
..+.+|+++++++.+.+..-+..+|.+++.++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~v 57 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREV 57 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHH
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35677888888887777765666777776654
No 201
>KOG0035|consensus
Probab=36.48 E-value=1.6e+02 Score=26.17 Aligned_cols=66 Identities=9% Similarity=0.074 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC
Q psy13766 82 DVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADT----ADDFIEGLRHFDKDGNGFISSAELRHLLTTLGN 149 (165)
Q Consensus 82 ~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~----~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~ 149 (165)
+++.++...+.. |..+.++|+.++..+-. .... ...+..+-...|.++-|.+++.+|-+.+..=-.
T Consensus 748 ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~--~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 748 ELRALENEQDKIDGGAASPEELLRCLMSLGY--NTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHHHHHhHHHHhhcccCCHHHHHHHHHhcCc--ccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 355666666655 77999999988865211 1111 234455556678888899999999988865433
No 202
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=36.33 E-value=75 Score=17.76 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=15.6
Q ss_pred cccHHHHHHHHHHhCCCCCHHHH
Q psy13766 134 FISSAELRHLLTTLGNFMSWVNL 156 (165)
Q Consensus 134 ~i~~~e~~~~l~~~~~~ls~~e~ 156 (165)
.+|.+|+...+..++...+.+++
T Consensus 9 ~lTeEEl~~~i~~L~~~~~~~dm 31 (61)
T TIGR01639 9 KLSKEELNELINSLDEIPNRNDM 31 (61)
T ss_pred HccHHHHHHHHHhhcCCCCHHHH
Confidence 46777777777777766666543
No 203
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=35.54 E-value=90 Score=18.91 Aligned_cols=26 Identities=23% Similarity=0.090 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy13766 135 ISSAELRHLLTTLGNFMSWVNLVEKE 160 (165)
Q Consensus 135 i~~~e~~~~l~~~~~~ls~~e~~~~~ 160 (165)
|+.++++++.+-....++++|++.+.
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~ 26 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFA 26 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 46677777777777778888876654
No 204
>KOG4301|consensus
Probab=35.30 E-value=98 Score=24.13 Aligned_cols=61 Identities=10% Similarity=-0.008 Sum_probs=43.8
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC-CcccHHHHHHHHHhhhc
Q psy13766 50 AFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD-ERISFEVFLPIYQAISK 110 (165)
Q Consensus 50 ~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~-g~isf~eF~~~~~~~~~ 110 (165)
+..++|+.+.|.++.--++.+|..+.-.--.++++-+|.....+ |-+.+-.|..++....+
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~isds~gim~~i~~~~fl~evls 176 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLISDSRGIMQEIQRDQFLHEVLS 176 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHc
Confidence 44578899999999888888887664444466788888887655 77777777776665433
No 205
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=34.88 E-value=77 Score=18.66 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=16.5
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy13766 135 ISSAELRHLLTTLGNFMSWVNLVEKEV 161 (165)
Q Consensus 135 i~~~e~~~~l~~~~~~ls~~e~~~~~~ 161 (165)
++..+++.+.+.+| +|+.+++.++.
T Consensus 9 v~~~~Wk~laR~LG--ls~~~I~~ie~ 33 (79)
T cd08784 9 VPFDQHKRFFRKLG--LSDNEIKVAEL 33 (79)
T ss_pred CCHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 56677777777777 56666665543
No 206
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=34.75 E-value=1.9e+02 Score=21.52 Aligned_cols=99 Identities=11% Similarity=0.085 Sum_probs=51.2
Q ss_pred CCCCcccHHHHHHHHHHc--CCCCCHHH---HHHHHHhcCCCCcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCC
Q psy13766 57 RGDNKIHVSQIGNVLRAL--GQNPTECD---VKKYSQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDG 131 (165)
Q Consensus 57 d~~g~i~~~e~~~~l~~l--~~~~~~~~---~~~~~~~~d~~g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 131 (165)
..||.++..|+. ..+.+ ...++... +..+|.... ....++.+|+..+...+.........-+..+|...= -
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k-~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~--A 142 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGK-EPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAF--A 142 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH--h
Confidence 458999999988 33333 23445555 455555431 144778888887765332110110111234444432 2
Q ss_pred CCcccHHHHHHHHHHhC--CCCCHHHHHHHH
Q psy13766 132 NGFISSAELRHLLTTLG--NFMSWVNLVEKE 160 (165)
Q Consensus 132 ~G~i~~~e~~~~l~~~~--~~ls~~e~~~~~ 160 (165)
||.++..|- +++..+. ..++..++..+.
T Consensus 143 DG~l~~~E~-~~L~~Ia~~Lgis~~df~~~~ 172 (267)
T PRK09430 143 DGSLHPNER-QVLYVIAEELGFSRFQFDQLL 172 (267)
T ss_pred cCCCCHHHH-HHHHHHHHHcCCCHHHHHHHH
Confidence 366887773 3333321 236776666554
No 207
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=34.68 E-value=82 Score=19.11 Aligned_cols=27 Identities=22% Similarity=0.117 Sum_probs=21.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy13766 134 FISSAELRHLLTTLGNFMSWVNLVEKE 160 (165)
Q Consensus 134 ~i~~~e~~~~l~~~~~~ls~~e~~~~~ 160 (165)
.|+.++++++.+-....++++|++.+.
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~ 28 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFA 28 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 377888888888888888888876654
No 208
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=34.60 E-value=48 Score=19.67 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=10.1
Q ss_pred HHHHHHhcCCCCcccHHHHHHHH
Q psy13766 83 VKKYSQQHKSDERISFEVFLPIY 105 (165)
Q Consensus 83 ~~~~~~~~d~~g~isf~eF~~~~ 105 (165)
++.++......|+|||++....+
T Consensus 9 i~~Li~~gK~~G~lT~~eI~~~L 31 (82)
T PF03979_consen 9 IKKLIEKGKKKGYLTYDEINDAL 31 (82)
T ss_dssp HHHHHHHHHHHSS-BHHHHHHH-
T ss_pred HHHHHHHHhhcCcCCHHHHHHHc
Confidence 44444443222666666655444
No 209
>KOG0042|consensus
Probab=34.17 E-value=68 Score=26.86 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=22.3
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHH
Q psy13766 122 EGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLV 157 (165)
Q Consensus 122 ~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~ 157 (165)
.-|..+|.++.|++++.+..+++++.+..++++-++
T Consensus 597 ~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~ 632 (680)
T KOG0042|consen 597 TRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLH 632 (680)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 456666666666666666666666666555554443
No 210
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=34.02 E-value=1.9e+02 Score=22.79 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=30.2
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhhhcCC
Q psy13766 60 NKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD---ERISFEVFLPIYQAISKGR 112 (165)
Q Consensus 60 g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~---g~isf~eF~~~~~~~~~~~ 112 (165)
..++.++|...|. .+-. +.+.+...+.+.... =++-|.||+..+..+-...
T Consensus 6 ~~~~LeeLe~kLa-~~d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~Ie~~~ 59 (379)
T PF11593_consen 6 PNLKLEELEEKLA-SNDN-SKDSVMDKISEAQDSILPLRLQFNEFIQTMANIEEMN 59 (379)
T ss_pred CCCcHHHHHHHHh-cCCc-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 3466777777665 2223 555555555444333 4678888888888764433
No 211
>KOG1954|consensus
Probab=33.74 E-value=1.1e+02 Score=24.42 Aligned_cols=57 Identities=11% Similarity=-0.065 Sum_probs=37.1
Q ss_pred HHHHHhcCCC-CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13766 84 KKYSQQHKSD-ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLT 145 (165)
Q Consensus 84 ~~~~~~~d~~-g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~ 145 (165)
+++|....+- |+++=..-...|.. ...+...+-.+|+..|.+.+|.++-+||.-+-.
T Consensus 447 de~fy~l~p~~gk~sg~~ak~~mv~-----sklpnsvlgkiwklad~d~dg~ld~eefala~h 504 (532)
T KOG1954|consen 447 DEIFYTLSPVNGKLSGRNAKKEMVK-----SKLPNSVLGKIWKLADIDKDGMLDDEEFALANH 504 (532)
T ss_pred HhhhhcccccCceeccchhHHHHHh-----ccCchhHHHhhhhhhcCCcccCcCHHHHHHHHH
Confidence 4444444332 55554443333333 134567788999999999999999999976443
No 212
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.68 E-value=1.5e+02 Score=19.96 Aligned_cols=105 Identities=11% Similarity=0.069 Sum_probs=63.7
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHH
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRAL--GQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADD 119 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l--~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~ 119 (165)
.....-+|.... .||.++..|......-+ .+.++...+..+......- ..+++-.|...+.. ..++....+-
T Consensus 29 lAa~~Llf~Vm~--ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r--~Ld~e~R~el 104 (148)
T COG4103 29 LAAAALLFHVME--ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKR--HLDEEQRLEL 104 (148)
T ss_pred HHHHHHHHHHHh--cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--hcCHHHHHHH
Confidence 344446777765 45778888866544333 6778888888888765322 56888999988875 3332233344
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHH---HHhCCCCCHHHH
Q psy13766 120 FIEGLRHFDKDGNGFISSAELRHLL---TTLGNFMSWVNL 156 (165)
Q Consensus 120 ~~~~f~~~D~~~~G~i~~~e~~~~l---~~~~~~ls~~e~ 156 (165)
+..+|.+.-. ||.++..|-.-+. .-+| +++++.
T Consensus 105 i~~mweIa~A--Dg~l~e~Ed~vi~RvAeLLg--V~~~d~ 140 (148)
T COG4103 105 IGLMWEIAYA--DGELDESEDHVIWRVAELLG--VSPEDR 140 (148)
T ss_pred HHHHHHHHHc--cccccHHHHHHHHHHHHHhC--CCHHHH
Confidence 5556665443 4557766654444 4456 355544
No 213
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=33.21 E-value=1.3e+02 Score=19.25 Aligned_cols=43 Identities=9% Similarity=0.229 Sum_probs=33.5
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCcccHHHHH
Q psy13766 57 RGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFL 102 (165)
Q Consensus 57 d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~g~isf~eF~ 102 (165)
-++..++.+++..+|...|..+....+..++..+. ..+.++.+
T Consensus 13 ~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~---gK~i~eLI 55 (113)
T PLN00138 13 GGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK---GKDITELI 55 (113)
T ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc---CCCHHHHH
Confidence 45556999999999999999999988888887774 24555554
No 214
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=32.74 E-value=71 Score=17.50 Aligned_cols=25 Identities=20% Similarity=0.043 Sum_probs=15.4
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhh
Q psy13766 139 ELRHLLTTLGNFMSWVNLVEKEVIW 163 (165)
Q Consensus 139 e~~~~l~~~~~~ls~~e~~~~~~~~ 163 (165)
|.++.+..-|+.||.+.++.+..++
T Consensus 16 Eak~~L~k~GIeLsme~~qP~m~L~ 40 (56)
T PF10815_consen 16 EAKEELDKKGIELSMEMLQPLMQLL 40 (56)
T ss_pred HHHHHHHHcCccCCHHHHHHHHHHH
Confidence 3556666667777777666655443
No 215
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=32.63 E-value=1.2e+02 Score=18.42 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=32.2
Q ss_pred CCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHc
Q psy13766 17 LKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRAL 74 (165)
Q Consensus 17 ~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l 74 (165)
-++|.|+-+++-...+.-|+.. .++.++... ...|.-.++-|..+|..+
T Consensus 25 l~n~~it~E~y~~V~a~~T~qd-------kmRkLld~v--~akG~~~k~~F~~iL~e~ 73 (85)
T cd08324 25 LKNDYFSTEDAEIVCACPTQPD-------KVRKILDLV--QSKGEEVSEYFLYLLQQL 73 (85)
T ss_pred hccCCccHHHHHHHHhCCCCHH-------HHHHHHHHH--HhcCchHHHHHHHHHHHH
Confidence 3678999999988877655544 556555542 345666666777777654
No 216
>KOG3449|consensus
Probab=31.68 E-value=1.4e+02 Score=19.05 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=26.4
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy13766 122 EGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEK 159 (165)
Q Consensus 122 ~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~~ 159 (165)
.+|-..+.-++...+..+++.+|.+.|....++-+..+
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~v 42 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLV 42 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHH
Confidence 34555566666677888888888888877776665544
No 217
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=31.26 E-value=74 Score=18.05 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=27.6
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCC
Q psy13766 58 GDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE 94 (165)
Q Consensus 58 ~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~g 94 (165)
.++-++...+...|..-|..+++..+...+..++.+|
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3456788888888877788888888888777776554
No 218
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=31.24 E-value=1.3e+02 Score=18.34 Aligned_cols=81 Identities=12% Similarity=0.109 Sum_probs=40.0
Q ss_pred CCCcccHHHHHHHHHHcC-CCCCHHH---HHHHHHhcCCCCcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCC
Q psy13766 58 GDNKIHVSQIGNVLRALG-QNPTECD---VKKYSQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNG 133 (165)
Q Consensus 58 ~~g~i~~~e~~~~l~~l~-~~~~~~~---~~~~~~~~d~~g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G 133 (165)
.||.++..|...+-+.+. ...+... +..++...- ....++.+|...+....+..+.....-+..+|...-. ||
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~A--DG 88 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGK-ESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAYA--DG 88 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-cCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--cC
Confidence 368888888655443321 2233333 334443321 1226677777776653322222223344555555443 36
Q ss_pred cccHHHHH
Q psy13766 134 FISSAELR 141 (165)
Q Consensus 134 ~i~~~e~~ 141 (165)
.++..|-.
T Consensus 89 ~~~~~E~~ 96 (106)
T cd07316 89 ELSEAERE 96 (106)
T ss_pred CCCHHHHH
Confidence 67776644
No 219
>KOG2301|consensus
Probab=31.18 E-value=57 Score=30.85 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=43.2
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHH--HHH-HhcC--CCCcccHHHHHHHHHh
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVK--KYS-QQHK--SDERISFEVFLPIYQA 107 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~--~~~-~~~d--~~g~isf~eF~~~~~~ 107 (165)
.+..+.+|..+|++..|.|...++...++.+..++.-..-+ +++ -... .+|.|+|.+-+..+..
T Consensus 1416 ~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1416 FEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred HHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeeehhhHHHHHHH
Confidence 68889999999999999999999999999875443211100 111 1111 1278888887765543
No 220
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.91 E-value=1.1e+02 Score=17.75 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=27.6
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy13766 59 DNKIHVSQIGNVLRALGQNPTECDVKKYSQQH 90 (165)
Q Consensus 59 ~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~ 90 (165)
+-.|+.+-++..+...|..+++..+++++...
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 55789999999999999999999999988754
No 221
>KOG2301|consensus
Probab=30.65 E-value=47 Score=31.35 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC
Q psy13766 117 ADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFM 151 (165)
Q Consensus 117 ~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~l 151 (165)
-+....+|..+|++.+|.|...++..++..+..+|
T Consensus 1416 ~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL 1450 (1592)
T KOG2301|consen 1416 FEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPL 1450 (1592)
T ss_pred HHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCcc
Confidence 45678899999999999999999999999986554
No 222
>KOG3077|consensus
Probab=30.40 E-value=2.3e+02 Score=21.15 Aligned_cols=65 Identities=25% Similarity=0.252 Sum_probs=43.6
Q ss_pred HHHHHHHhhhh-cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhh
Q psy13766 44 IDEYLEAFQLF-DNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAI 108 (165)
Q Consensus 44 ~~~l~~~F~~~-D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~ 108 (165)
...+...|..| |++.+..|-.+-+....+.+|+.+..-..=-+.-.++.. +..+..+|+..+..+
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l 130 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTAL 130 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHc
Confidence 45566666554 566557899999999999999887654332222233333 888999998877653
No 223
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=30.32 E-value=99 Score=19.13 Aligned_cols=27 Identities=22% Similarity=0.105 Sum_probs=21.1
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy13766 134 FISSAELRHLLTTLGNFMSWVNLVEKE 160 (165)
Q Consensus 134 ~i~~~e~~~~l~~~~~~ls~~e~~~~~ 160 (165)
.|+.++++++.+-....+|+++++.+.
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~ 28 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFA 28 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHH
Confidence 478888888888878888888887553
No 224
>PLN00035 histone H4; Provisional
Probab=30.26 E-value=1.5e+02 Score=18.77 Aligned_cols=67 Identities=6% Similarity=0.119 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC
Q psy13766 78 PTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFM 151 (165)
Q Consensus 78 ~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~l 151 (165)
++..-+..+....... ..--|+++...+..+.. +-+..+-...+-.+--+|+.+|+..+++..|.+|
T Consensus 30 ipk~~IrRLARr~GvkRIS~~ay~elr~vle~~l~-------~I~~dav~ya~HA~RKTV~~~DV~~Alkr~g~~l 98 (103)
T PLN00035 30 ITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLE-------NVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL 98 (103)
T ss_pred CCHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCCCcCcHHHHHHHHHHcCCcC
Confidence 5666666666665433 33345555555554332 3344444443444555699999999999988765
No 225
>KOG2303|consensus
Probab=30.10 E-value=3.3e+02 Score=22.75 Aligned_cols=98 Identities=10% Similarity=0.088 Sum_probs=56.2
Q ss_pred HHHHHHhhhh-----cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh-------------c-CCC---CcccHHHHH
Q psy13766 45 DEYLEAFQLF-----DNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQ-------------H-KSD---ERISFEVFL 102 (165)
Q Consensus 45 ~~l~~~F~~~-----D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~-------------~-d~~---g~isf~eF~ 102 (165)
+.++....+| |.|.-|-|++-+++..++-....+.-..++.+... + ..| =.++|+|..
T Consensus 520 E~LrGYLTKYDCSSADINPIGgISK~DLr~Fl~~a~~~~~lp~L~~il~a~pTAELePl~~g~~~QtDE~dmGmTY~ELs 599 (706)
T KOG2303|consen 520 ESLRGYLTKYDCSSADINPIGGISKTDLRRFLQYAKEKFGLPALQSILDAPPTAELEPLTDGDYSQTDEADMGMTYAELS 599 (706)
T ss_pred hHhhhhhhhccccccccCCccCccHHHHHHHHHHHHHhcCchHHHHHhcCCCcccccccccCcccccchhhhCccHHHHH
Confidence 3455455555 45777889999988887644322222223333221 1 111 135666643
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy13766 103 PIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEVIW 163 (165)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~~~~~~ 163 (165)
.+..+. .-.+.-...-|.+++...|.++|+.|+.|+-+.|
T Consensus 600 -v~GrlR--------------------K~~~cGPysMF~kLl~~W~~klsp~qvaEKVk~F 639 (706)
T KOG2303|consen 600 -VFGRLR--------------------KVSKCGPYSMFCKLLHQWGDKLSPRQVAEKVKRF 639 (706)
T ss_pred -HhHhhc--------------------cccccCcHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 222211 1123445667899999999999999999887655
No 226
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=29.15 E-value=1.4e+02 Score=18.32 Aligned_cols=80 Identities=9% Similarity=0.130 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q psy13766 65 SQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRH 142 (165)
Q Consensus 65 ~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~ 142 (165)
.++..........++..-+++++...... ..--.+++...+..+.. +-...+-....-.+--+|+.+|+..
T Consensus 7 ~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~Rvs~~A~~~l~~~~e~~~~-------~i~~~A~~~A~ha~RKTV~~~DI~l 79 (91)
T COG2036 7 KEIRRYQRSTDLLLPKAPVRRILRKAGAERVSSSAIEELQEALEEYLE-------EIAEDAVELAEHAKRKTVKAEDIKL 79 (91)
T ss_pred HHHHhhhhhhhhhcCchHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHcCCCeecHHHHHH
Confidence 34444444444444444455555554332 22223333333333211 2233444444455666799999999
Q ss_pred HHHHhCCCC
Q psy13766 143 LLTTLGNFM 151 (165)
Q Consensus 143 ~l~~~~~~l 151 (165)
+++.++.+.
T Consensus 80 a~~~~~~~~ 88 (91)
T COG2036 80 ALKRLGRRI 88 (91)
T ss_pred HHHHhcccc
Confidence 998887643
No 227
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=28.92 E-value=77 Score=15.38 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=12.8
Q ss_pred cccHHHHHHHHHHhCCCC
Q psy13766 134 FISSAELRHLLTTLGNFM 151 (165)
Q Consensus 134 ~i~~~e~~~~l~~~~~~l 151 (165)
.++..|+++.++..|.+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 367788888888887654
No 228
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=28.52 E-value=81 Score=17.73 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=22.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCC
Q psy13766 120 FIEGLRHFDKDGNGFISSAELRHLLTTLGNF 150 (165)
Q Consensus 120 ~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ 150 (165)
+..+++.++.+...-|+.++...-++..|.+
T Consensus 6 ~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N 36 (69)
T PF00690_consen 6 VEEVLKRLNTSSSQGLSSEEVEERRKKYGPN 36 (69)
T ss_dssp HHHHHHHHTTBTSSBBTHHHHHHHHHHHSSS
T ss_pred HHHHHHHHCcCCCCCCCHHHHHHHHHhcccc
Confidence 4566777777777778888888888877753
No 229
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=28.29 E-value=1.1e+02 Score=23.77 Aligned_cols=104 Identities=13% Similarity=0.039 Sum_probs=56.2
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCC----------HHHHHHHHHhcCCC---CcccHHHHHHHHHhhhcCCCCCCHHHHH
Q psy13766 55 DNRGDNKIHVSQIGNVLRALGQNPT----------ECDVKKYSQQHKSD---ERISFEVFLPIYQAISKGRSADTADDFI 121 (165)
Q Consensus 55 D~d~~g~i~~~e~~~~l~~l~~~~~----------~~~~~~~~~~~d~~---g~isf~eF~~~~~~~~~~~~~~~~~~~~ 121 (165)
+.+..+.++..+....+..++.+.. ...+..++...... |-|- ..--.....++-........++.
T Consensus 135 ~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~G~EGVVl-K~~~~~~~~~Ky~t~~~~~~di~ 213 (342)
T cd07894 135 KKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKEGREGVVL-KDPDMRVPPLKYTTSYSNCSDIR 213 (342)
T ss_pred EcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHCCCceEEE-eccccccCcceeecCCCCcHHHH
Confidence 3344567889999998988876432 24566666655433 3221 11000000000111122345677
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy13766 122 EGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEK 159 (165)
Q Consensus 122 ~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~~ 159 (165)
.+|+.+---+-++...-=++..+.......++++.++.
T Consensus 214 ~~~~~~~d~~~~~~~~Ri~R~~~~~~E~~~~~~~~~~~ 251 (342)
T cd07894 214 YAFRYPFDLGRDFFFSRIVREGFQSVELGESEEELEER 251 (342)
T ss_pred HHhhhccccCchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 77777555566677666667777666666666655543
No 230
>PLN02223 phosphoinositide phospholipase C
Probab=28.29 E-value=3.1e+02 Score=22.92 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=10.0
Q ss_pred CcccHHHHHHHHHH
Q psy13766 133 GFISSAELRHLLTT 146 (165)
Q Consensus 133 G~i~~~e~~~~l~~ 146 (165)
+.++++.|..+|-+
T Consensus 79 ~~l~~~~f~~~L~s 92 (537)
T PLN02223 79 RCLELDHLNEFLFS 92 (537)
T ss_pred cccCHHHHHHHhcC
Confidence 55788888777754
No 231
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=28.16 E-value=2.1e+02 Score=19.85 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=25.7
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC-CcccHHHH
Q psy13766 62 IHVSQIGNVLRALGQNPTECDVKKYSQQHKSD-ERISFEVF 101 (165)
Q Consensus 62 i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~-g~isf~eF 101 (165)
++..+.+.-|.+.|+..+....+.++...-.+ +..-|..|
T Consensus 2 ~ns~~~~~~lka~gi~tnskqyka~~~~mm~~~~~~~y~~~ 42 (186)
T PF12995_consen 2 INSSSVQEQLKAAGINTNSKQYKAVMSEMMSAGEGAMYTNI 42 (186)
T ss_pred CChHHHHHHHHhcCCCcChHHHHHHHHHHhcCCCCceeehH
Confidence 45566777777788888777777777666555 33334443
No 232
>KOG0719|consensus
Probab=27.90 E-value=2e+02 Score=21.28 Aligned_cols=26 Identities=8% Similarity=0.047 Sum_probs=15.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy13766 138 AELRHLLTTLGNFMSWVNLVEKEVIW 163 (165)
Q Consensus 138 ~e~~~~l~~~~~~ls~~e~~~~~~~~ 163 (165)
++++.++..+-.++|.+.+++++..|
T Consensus 93 ~~~~e~~~~iyk~VteedIeef~a~Y 118 (264)
T KOG0719|consen 93 EDWLEFWRAIYKKVTEEDIEEFEANY 118 (264)
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHh
Confidence 44555565555556666666665544
No 233
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=27.83 E-value=1.6e+02 Score=18.36 Aligned_cols=45 Identities=11% Similarity=0.116 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC-CHHHHHHH
Q psy13766 115 DTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFM-SWVNLVEK 159 (165)
Q Consensus 115 ~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~l-s~~e~~~~ 159 (165)
.+.+++..+-..+-..+...++..++..++..+...+ ++++++.+
T Consensus 36 Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV 81 (96)
T PF11829_consen 36 LTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERV 81 (96)
T ss_dssp S-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHH
Confidence 3444455544444334444445555555555554332 55555443
No 234
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=27.81 E-value=61 Score=15.41 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=6.6
Q ss_pred ccHHHHHHHHHH
Q psy13766 135 ISSAELRHLLTT 146 (165)
Q Consensus 135 i~~~e~~~~l~~ 146 (165)
||.+||++++..
T Consensus 17 ls~eeir~FL~~ 28 (30)
T PF08671_consen 17 LSKEEIREFLEF 28 (30)
T ss_dssp --HHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 677777776653
No 235
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=27.71 E-value=1.3e+02 Score=17.32 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=24.0
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHc----CCCCCHHHHHHHHHhc
Q psy13766 46 EYLEAFQLFDNRGDNKIHVSQIGNVLRAL----GQNPTECDVKKYSQQH 90 (165)
Q Consensus 46 ~l~~~F~~~D~d~~g~i~~~e~~~~l~~l----~~~~~~~~~~~~~~~~ 90 (165)
.+..+...++....--+-..+++.++..+ |...+++.++.+|+.+
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 34444444443333345555666666554 6777888888888754
No 236
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=27.67 E-value=39 Score=18.12 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=18.4
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy13766 134 FISSAELRHLLTTLGNFMSWVNLVEKEVI 162 (165)
Q Consensus 134 ~i~~~e~~~~l~~~~~~ls~~e~~~~~~~ 162 (165)
.+|.+++.+-+.++...+ +.|++++-.-
T Consensus 7 ~ls~~eL~~rl~~LD~~M-E~Eieelr~R 34 (49)
T PF11629_consen 7 FLSYEELQQRLASLDPEM-EQEIEELRQR 34 (49)
T ss_dssp GS-HHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred hCCHHHHHHHHHhCCHHH-HHHHHHHHHH
Confidence 467888888888876533 6677766543
No 237
>KOG0998|consensus
Probab=27.61 E-value=38 Score=29.77 Aligned_cols=58 Identities=7% Similarity=0.058 Sum_probs=45.4
Q ss_pred hhhhcCCCCCCcchHHHHHHHhcCCCccccccccHHHHHHHhhhhcCCCCCcccHHHHHHHHHH
Q psy13766 10 LKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRA 73 (165)
Q Consensus 10 ~~~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~i~~~e~~~~l~~ 73 (165)
+...+|.+.+|.|+..++...+....- ....+..+|...|.++.|.++..++...+..
T Consensus 288 if~q~d~~~dG~I~s~~~~~~f~~~gl------~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 288 IFSQVDKDNDGSISSNEARNIFLPFGL------SKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHhccccCCCcccccccccccccCCC------ChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 457788899999999998877744111 1467899999999999999999988776643
No 238
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=27.45 E-value=22 Score=26.90 Aligned_cols=29 Identities=38% Similarity=0.626 Sum_probs=24.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy13766 134 FISSAELRHLLTTLGNFMSWVNLVEKEVIW 163 (165)
Q Consensus 134 ~i~~~e~~~~l~~~~~~ls~~e~~~~~~~~ 163 (165)
.-+.++++++|+.++- ++.+.+..+||||
T Consensus 237 ~~~~~~l~~aL~~l~~-~~~~~l~a~evlW 265 (289)
T PF07466_consen 237 INSAEDLREALRKLGS-ISSDRLLAVEVLW 265 (289)
T ss_pred CCCHHHHHHHHHHHhC-CChhheeeEEEEE
Confidence 4588999999999975 5678888888888
No 239
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=27.24 E-value=1.5e+02 Score=17.96 Aligned_cols=46 Identities=7% Similarity=0.041 Sum_probs=33.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCcccHHHHHHHHHh
Q psy13766 59 DNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQA 107 (165)
Q Consensus 59 ~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~g~isf~eF~~~~~~ 107 (165)
.|.++.++...+.. .....+....++......|.-.|..|+..+..
T Consensus 32 ~gvlt~~~~~~I~~---~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 32 KDILTDSMAESIMA---KPTSFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred cCCCCHHHHHHHHc---CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 57888877666653 34556677777777655588999999988854
No 240
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=26.76 E-value=87 Score=15.04 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=13.6
Q ss_pred cccHHHHHHHHHHhCCCCC
Q psy13766 134 FISSAELRHLLTTLGNFMS 152 (165)
Q Consensus 134 ~i~~~e~~~~l~~~~~~ls 152 (165)
.++..+++..++..|.+.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4677888888888776543
No 241
>KOG4286|consensus
Probab=26.64 E-value=3e+02 Score=24.21 Aligned_cols=95 Identities=9% Similarity=0.033 Sum_probs=60.2
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC-CcccHHHHHHHHHhhhcC----------CCCCCH
Q psy13766 49 EAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD-ERISFEVFLPIYQAISKG----------RSADTA 117 (165)
Q Consensus 49 ~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~-g~isf~eF~~~~~~~~~~----------~~~~~~ 117 (165)
=++..||+.++|.|..-.|+..+-.+.-.+.++.+.-+|.....+ ..+.-..|-.++..+... ....-+
T Consensus 474 ~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~q~~l~lLL~dliqipr~lGE~aAfGgsNve 553 (966)
T KOG4286|consen 474 WLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCDQRRLGLLLHDLIQIPRQLGEVAAFGGSNIE 553 (966)
T ss_pred HHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCC
Confidence 345678999999999999999888887778888888999888655 333355554444432210 001112
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13766 118 DDFIEGLRHFDKDGNGFISSAELRHLLT 145 (165)
Q Consensus 118 ~~~~~~f~~~D~~~~G~i~~~e~~~~l~ 145 (165)
..++..|. -.++--.|++..|..++.
T Consensus 554 psvrsCF~--~v~~~pei~~~~f~dw~~ 579 (966)
T KOG4286|consen 554 PSVRSCFQ--FVNNKPEIEAALFLDWMR 579 (966)
T ss_pred hHHHHHHH--hcCCCCcchHHHHHHHhc
Confidence 34666776 234445577777766553
No 242
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.14 E-value=1.8e+02 Score=20.42 Aligned_cols=104 Identities=13% Similarity=0.190 Sum_probs=64.9
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCC----CCcccHHHHHHHHHhhhc-------C-C
Q psy13766 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKS----DERISFEVFLPIYQAISK-------G-R 112 (165)
Q Consensus 45 ~~l~~~F~~~D~d~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~----~g~isf~eF~~~~~~~~~-------~-~ 112 (165)
..++.+|.-||+..--..+-+++...+..-++--...+|+.+...... ... ||..|+--+..-.. . .
T Consensus 53 ~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~e-sf~~ylW~fv~~~Pi~~~~~~~~~ 131 (179)
T TIGR00624 53 ENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQN-DLVEFLWSFVNHQPQPRQRPTDSE 131 (179)
T ss_pred HHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHc-cHHHHHHhccCCCCccCCcccccc
Confidence 578889999998887788888998888877766666666655542210 112 77887743321101 0 1
Q ss_pred CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC
Q psy13766 113 SADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGN 149 (165)
Q Consensus 113 ~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~ 149 (165)
.....+....+.+.+-+.|-.++..--...+|+..|.
T Consensus 132 ~p~~t~~S~~lskdLKkrGfkFvGpt~~ysfmqA~G~ 168 (179)
T TIGR00624 132 IPSSTPESKAMSKELKKRGFRFVGPTICYALMQATGM 168 (179)
T ss_pred CCCCCHHHHHHHHHHHHcCCeecChHHHHHHHHHHCC
Confidence 1122234566666677777777777777777777774
No 243
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=25.90 E-value=1.7e+02 Score=18.05 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=34.4
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCcccHHHHHHHHHh
Q psy13766 58 GDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQA 107 (165)
Q Consensus 58 ~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~g~isf~eF~~~~~~ 107 (165)
+.|.++.++...+-. ...+.+....++......|.-.|..|+..+..
T Consensus 32 ~~gIlT~~~~e~I~a---~~T~~~k~~~LLdiLp~RG~~AF~~F~~aL~e 78 (94)
T cd08327 32 QEGILTESHVEEIES---QTTSRRKTMKLLDILPSRGPKAFHAFLDSLEE 78 (94)
T ss_pred hCCCCCHHHHHHHHc---cCChHHHHHHHHHHHHhhChhHHHHHHHHHHH
Confidence 367888887776653 45567777888877755599999999988854
No 244
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=25.82 E-value=1.1e+02 Score=16.07 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=13.1
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy13766 133 GFISSAELRHLLTTLGNFMSWVNLVEK 159 (165)
Q Consensus 133 G~i~~~e~~~~l~~~~~~ls~~e~~~~ 159 (165)
|..|.++++.++..-. +|.+|.+++
T Consensus 16 g~~t~e~v~~~V~~~~--IT~eey~eI 40 (45)
T TIGR01669 16 GYYSNEDVNKFVEKKL--ITREQYKVI 40 (45)
T ss_pred CCCCHHHHHHHhhcCc--cCHHHHHHH
Confidence 4555566555554322 566665543
No 245
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=24.92 E-value=83 Score=19.24 Aligned_cols=79 Identities=9% Similarity=0.026 Sum_probs=39.1
Q ss_pred CCCcccHHHHHHHHHHcC--CC---CCHHHHHHHHHhcCCC-CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCC
Q psy13766 58 GDNKIHVSQIGNVLRALG--QN---PTECDVKKYSQQHKSD-ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDG 131 (165)
Q Consensus 58 ~~g~i~~~e~~~~l~~l~--~~---~~~~~~~~~~~~~d~~-g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 131 (165)
.||.++..|...+.+.+. .. .....+..++...-.. ...+..++...+..... +.....-+..++.....
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~ia~a-- 90 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALLRPEGLAALLKAAAKLLP--PELRETAFAVAVDIAAA-- 90 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHc--
Confidence 368899888887776653 22 3334445555443211 13445566655554221 11222334445555443
Q ss_pred CCcccHHHH
Q psy13766 132 NGFISSAEL 140 (165)
Q Consensus 132 ~G~i~~~e~ 140 (165)
||.++..|-
T Consensus 91 DG~~~~~E~ 99 (111)
T cd07176 91 DGEVDPEER 99 (111)
T ss_pred cCCCCHHHH
Confidence 355766554
No 246
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=24.89 E-value=1.4e+02 Score=18.16 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=20.0
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy13766 133 GFISSAELRHLLTTLGNFMSWVNLVEK 159 (165)
Q Consensus 133 G~i~~~e~~~~l~~~~~~ls~~e~~~~ 159 (165)
|+.+..+|..-|..+| +|.+|++++
T Consensus 61 Gy~N~KqllkrLN~f~--it~~e~~~a 85 (87)
T PF13331_consen 61 GYGNAKQLLKRLNMFG--ITREEFEEA 85 (87)
T ss_pred CCCCHHHHHHHHHHcC--CCHHHHHHH
Confidence 7888888888888888 588887765
No 247
>PLN02223 phosphoinositide phospholipase C
Probab=24.19 E-value=3.7e+02 Score=22.48 Aligned_cols=63 Identities=10% Similarity=0.023 Sum_probs=43.3
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHH---HHc-C-CCCCHHHHHHHHHhcCC---------C-CcccHHHHHHHHHh
Q psy13766 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVL---RAL-G-QNPTECDVKKYSQQHKS---------D-ERISFEVFLPIYQA 107 (165)
Q Consensus 44 ~~~l~~~F~~~D~d~~g~i~~~e~~~~l---~~l-~-~~~~~~~~~~~~~~~d~---------~-g~isf~eF~~~~~~ 107 (165)
-..++.+|..|. .+.|.++...+...+ ... | ...+.++.+.++..+-. . +.++.+.|..++..
T Consensus 15 p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 15 PDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred cHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 368899999884 567889999999888 333 2 24556666666554311 1 45999999988853
No 248
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=24.14 E-value=1.3e+02 Score=19.22 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=16.4
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy13766 136 SSAELRHLLTTLGNFMSWVNLVEKEV 161 (165)
Q Consensus 136 ~~~e~~~~l~~~~~~ls~~e~~~~~~ 161 (165)
+.++.+.++.++...+++++++++..
T Consensus 84 s~~E~~~lI~sl~~r~~ee~l~~iL~ 109 (118)
T smart00657 84 TAEEAQLLIPSLEERIDEEELEELLD 109 (118)
T ss_pred CHHHHHHHhhhhhccCCHHHHHHHHH
Confidence 45566666666666667766666544
No 249
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=23.97 E-value=1.7e+02 Score=21.02 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=7.0
Q ss_pred CcccHHHHHHHHHh
Q psy13766 94 ERISFEVFLPIYQA 107 (165)
Q Consensus 94 g~isf~eF~~~~~~ 107 (165)
|.|+-++|...+..
T Consensus 40 G~Id~~e~kkav~~ 53 (215)
T PF09873_consen 40 GKIDVEEFKKAVYS 53 (215)
T ss_pred CcccHHHHHHHHHH
Confidence 55555555544444
No 250
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=23.62 E-value=72 Score=23.39 Aligned_cols=33 Identities=24% Similarity=0.171 Sum_probs=25.1
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q psy13766 132 NGFISSAELRHLLTTLGNFMSWVNLVEKEVIWV 164 (165)
Q Consensus 132 ~G~i~~~e~~~~l~~~~~~ls~~e~~~~~~~~~ 164 (165)
-|.=+.+++.+.+..+..+||+++++++.-+|.
T Consensus 251 ~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~~ 283 (283)
T PF00248_consen 251 VGASSPEHLEENLAALDFPLTEEELAEIDQILA 283 (283)
T ss_dssp EB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH-
T ss_pred CCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhhC
Confidence 444588999999999988999999999988763
No 251
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=23.35 E-value=94 Score=19.61 Aligned_cols=15 Identities=7% Similarity=0.102 Sum_probs=6.9
Q ss_pred CCCCHHHHHHHHHhc
Q psy13766 76 QNPTECDVKKYSQQH 90 (165)
Q Consensus 76 ~~~~~~~~~~~~~~~ 90 (165)
...+...+..+...+
T Consensus 52 ~~~~~e~~~~l~~~L 66 (117)
T PF03874_consen 52 KFQNPESIKELREEL 66 (117)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 333344455555444
No 252
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=23.23 E-value=2.7e+02 Score=19.50 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=8.5
Q ss_pred CCcccHHHHHHHHHHhC
Q psy13766 132 NGFISSAELRHLLTTLG 148 (165)
Q Consensus 132 ~G~i~~~e~~~~l~~~~ 148 (165)
+..||..||..++..+|
T Consensus 73 ~~~iT~~Df~~F~A~FG 89 (181)
T PF11422_consen 73 TNVITIPDFYKFLARFG 89 (181)
T ss_dssp -SEEEHHHHHHHHHHSS
T ss_pred CceeeHHHHHHHHHHhC
Confidence 44455555555555554
No 253
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=23.21 E-value=1.4e+02 Score=23.62 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=29.8
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHh----------------CCCCCHHHHHHHHHhh
Q psy13766 124 LRHFDKDGNGFISSAELRHLLTTL----------------GNFMSWVNLVEKEVIW 163 (165)
Q Consensus 124 f~~~D~~~~G~i~~~e~~~~l~~~----------------~~~ls~~e~~~~~~~~ 163 (165)
+..||.++.+ ++++.+...|+.+ |..+|.+|++++..+.
T Consensus 147 Y~Yyd~~~~~-~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~ 201 (396)
T COG1448 147 YPYYDAETKG-LDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLI 201 (396)
T ss_pred eecccccccc-ccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHH
Confidence 5677866555 8888888888877 5678999998887654
No 254
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=22.61 E-value=2.3e+02 Score=22.49 Aligned_cols=109 Identities=13% Similarity=0.092 Sum_probs=60.6
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHcCCCC-------CHH----HHHHHHHhcCCC--CcccHHHHHHHHHhhhcCCCCCC
Q psy13766 50 AFQLFDNRGDNKIHVSQIGNVLRALGQNP-------TEC----DVKKYSQQHKSD--ERISFEVFLPIYQAISKGRSADT 116 (165)
Q Consensus 50 ~F~~~D~d~~g~i~~~e~~~~l~~l~~~~-------~~~----~~~~~~~~~d~~--g~isf~eF~~~~~~~~~~~~~~~ 116 (165)
+|..+|.+....++.++-...+..+|++. +.. .+..++..++.. ..|-+.+--.....++-......
T Consensus 162 vFDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVlK~~~~~~~~~KYtT~~~n 241 (374)
T TIGR01209 162 LFDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVVMKDPEMRVKPLKYTTSYAN 241 (374)
T ss_pred EEEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEEEcCccccCCcceeecCccC
Confidence 34444556678899999999998887653 222 344555555544 12333221111111111122333
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHH
Q psy13766 117 ADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVE 158 (165)
Q Consensus 117 ~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ls~~e~~~ 158 (165)
..++..+|+.+---+-++...-=++..+.....+.+++++++
T Consensus 242 ~~Di~~~~~~~~d~g~df~~sRi~Re~f~~~E~~~~~~e~~~ 283 (374)
T TIGR01209 242 INDIKYAARYFFELGRDFFFSRILREAFQSYEFGEKGEEFRR 283 (374)
T ss_pred hHHHHHHHhhccccCchHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 466777777755556667766666777766666667666543
No 255
>COG3820 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.28 E-value=68 Score=22.47 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=32.3
Q ss_pred CcccHHHHHHHHHhhhcCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13766 94 ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLT 145 (165)
Q Consensus 94 g~isf~eF~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~ 145 (165)
..+||++...+|...-..-.....-+...-.+-.|+-.+|.++.+|+...-+
T Consensus 19 TsLsF~QIA~FCglHplEvk~iADGE~aq~IkGldPI~~GQLtreEi~rae~ 70 (230)
T COG3820 19 TSLSFDQIADFCGLHPLEVKGIADGEVAQGIKGLDPIANGQLTREEIARAEK 70 (230)
T ss_pred ccccHHHHHHHhCcCcceeeeeccchhhccccCCCccccCcccHHHHHhhhc
Confidence 5689999888875311100111112344456778888999999999876543
No 256
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=21.93 E-value=1.5e+02 Score=16.06 Aligned_cols=31 Identities=10% Similarity=0.162 Sum_probs=20.3
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy13766 58 GDNKIHVSQIGNVLRALGQNPTECDVKKYSQ 88 (165)
Q Consensus 58 ~~g~i~~~e~~~~l~~l~~~~~~~~~~~~~~ 88 (165)
.+|.|+..||..-+...-.--+..++..++.
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 3688888888777666555555556655554
No 257
>COG4371 Predicted membrane protein [Function unknown]
Probab=21.48 E-value=32 Score=25.44 Aligned_cols=33 Identities=33% Similarity=0.529 Sum_probs=25.9
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy13766 130 DGNGFISSAELRHLLTTLGNFMSWVNLVEKEVIW 163 (165)
Q Consensus 130 ~~~G~i~~~e~~~~l~~~~~~ls~~e~~~~~~~~ 163 (165)
+-.+.-+..|+++.|..++- ++.+++-.+||+|
T Consensus 278 ~lpaVn~s~~lrqaL~~igg-i~s~~Lla~EVlW 310 (334)
T COG4371 278 PLPAVNTSAELRQALLAIGG-ITSGDLLAAEVLW 310 (334)
T ss_pred CCcccCcHHHHHHHHHHhcC-CCccceeeeEEee
Confidence 34555688999999999875 6777788888887
No 258
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=21.36 E-value=1.8e+02 Score=16.83 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=7.4
Q ss_pred ccHHHHHHHHHh
Q psy13766 96 ISFEVFLPIYQA 107 (165)
Q Consensus 96 isf~eF~~~~~~ 107 (165)
.+|++|...+..
T Consensus 27 ~~W~~~~~~~~~ 38 (96)
T PF03732_consen 27 ITWEEFKDAFRK 38 (96)
T ss_pred CCHHHHHHHHHH
Confidence 467777765544
No 259
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=21.20 E-value=1.3e+02 Score=15.18 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=10.9
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHH
Q psy13766 133 GFISSAELRHLLTTLGNFMSWVNLVE 158 (165)
Q Consensus 133 G~i~~~e~~~~l~~~~~~ls~~e~~~ 158 (165)
|..|.++++.+...-- +|.+|.++
T Consensus 11 g~~t~~~v~~~V~~g~--IT~eey~e 34 (40)
T PF09693_consen 11 GLYTKEDVKNFVEAGW--ITKEEYKE 34 (40)
T ss_pred CCCCHHHHHHHhhcCe--ECHHHHHH
Confidence 3445555554444322 45555444
No 260
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=20.78 E-value=1.1e+02 Score=21.94 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=20.6
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHhC
Q psy13766 124 LRHFDKDGNGFISSAELRHLLTTLG 148 (165)
Q Consensus 124 f~~~D~~~~G~i~~~e~~~~l~~~~ 148 (165)
..-+|.|++|.++.+++..+...+-
T Consensus 56 l~~~D~~~dg~~~~~el~~l~~~~~ 80 (212)
T PF06226_consen 56 LEGLDKDGDGKLDPEELAALAKEIF 80 (212)
T ss_pred HHhhhhcccCCCCHHHHHHHHHHHH
Confidence 3468999999999999998887653
No 261
>cd03515 Link_domain_TSG_6_like This is the extracellular link domain of the type found in human TSG-6. The link domain is a hyaluronan (HA)-binding domain. TSG-6 is the protein product of tumor necrosis factor-stimulated gene-6. TSG-6 is up-regulated in inflammatory lesions and in the ovary during ovulation. It has a strong anti-inflammatory and chondroprotective effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. Also included in this group are the stabilins: stabilin-1 (FEEL-1, CLEVER-1) and stabilin-2 (FEEL-2). Stabilin-2 functions as the major liver and lymph node-scavenging receptor for HA and related glycosaminoglycans. Stabilin-2 is a scavenger receptor with a broad range of ligands including advanced glycation end (AGE) products, acetylated low density lipoprotein and procollagen peptides. In contrast, stabilin-1 does not bind HA, but binds acetylated low density lipoprotein and AGEs with lower affinity. As AGEs accum
Probab=20.61 E-value=1.8e+02 Score=17.99 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=21.5
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHhCCCC-CHHHHHHH
Q psy13766 124 LRHFDKDGNGFISSAELRHLLTTLGNFM-SWVNLVEK 159 (165)
Q Consensus 124 f~~~D~~~~G~i~~~e~~~~l~~~~~~l-s~~e~~~~ 159 (165)
|..-.+.+.-.+|++|-+++....+..| |.+|+...
T Consensus 3 Fh~~~~~grY~l~f~eA~~aC~~~ga~lAs~~QL~~A 39 (93)
T cd03515 3 FHLRSRSGKYKLTYTEAKAACEAEGAHLATYSQLSAA 39 (93)
T ss_pred eeeeCCCCccccCHHHHHHHHHHcCCccCCHHHHHHH
Confidence 3334455556677777777777776655 55555443
No 262
>cd01102 Link_Domain The link domain is a hyaluronan (HA)-binding domain. It functions to mediate adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It is found in the CD44 receptor and in human TSG-6. TSG-6 is the protein product of the tumor necrosis factor-stimulated gene-6. TSG-6 has a strong anti-inflammatory effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. This group also contains the link domains of the chondroitin sulfate proteoglycan core proteins (CSPG) including aggrecan, versican, neurocan, and brevican and the link domains of the vertebrate HAPLN (HA and proteoglycan binding link) protein family. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates in which other CSPGs substitute for aggregan might contribute to the structural integrity of many different tissues. Members of
Probab=20.07 E-value=1e+02 Score=19.03 Aligned_cols=34 Identities=15% Similarity=0.024 Sum_probs=23.6
Q ss_pred hhCCCCCCcccHHHHHHHHHHhCCCC-CHHHHHHH
Q psy13766 126 HFDKDGNGFISSAELRHLLTTLGNFM-SWVNLVEK 159 (165)
Q Consensus 126 ~~D~~~~G~i~~~e~~~~l~~~~~~l-s~~e~~~~ 159 (165)
.-.+++.-.++++|=+++....|..| |..|+...
T Consensus 5 ~~s~~g~y~l~f~eA~~aC~~~ga~lAs~~QL~~A 39 (92)
T cd01102 5 LESQNGRYKLTFAEAALACKARGAHLATPGQLEAA 39 (92)
T ss_pred ecCCCCCcccCHHHHHHHHHHcCCEeCCHHHHHHH
Confidence 33456777788888888888887766 66666554
No 263
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=20.07 E-value=1e+02 Score=18.77 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=13.6
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHH
Q psy13766 135 ISSAELRHLLTTLGNFMSWVNLVEK 159 (165)
Q Consensus 135 i~~~e~~~~l~~~~~~ls~~e~~~~ 159 (165)
++..||..++ .+||++++..+
T Consensus 9 m~v~efn~~L----~~lt~~q~~~l 29 (92)
T PF03131_consen 9 MSVREFNRLL----RGLTEEQIAEL 29 (92)
T ss_dssp S-HHHHHHHC----TTS-HHHHHHH
T ss_pred CCHHHHHHHH----HcCCHHHHHHH
Confidence 5667777777 66888887765
Done!