RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13766
(165 letters)
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 98.3 bits (245), Expect = 9e-27
Identities = 46/107 (42%), Positives = 66/107 (61%), Gaps = 4/107 (3%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDER--ISFEVF 101
I E+ EAF LFD GD I ++G V+R+LGQNPTE +++ + +D I F F
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
L + K + D+ ++ E + FD+DGNGFIS+AELRH++T LG
Sbjct: 70 LTLMA--RKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLG 114
Score = 31.7 bits (72), Expect = 0.088
Identities = 17/62 (27%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKS--DERISFEVFL 102
+E EAF++FD G+ I +++ +V+ LG+ T+ +V + ++ D +I++E F+
Sbjct: 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 143
Query: 103 PI 104
+
Sbjct: 144 KM 145
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 70.0 bits (172), Expect = 7e-16
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKK-YSQQHKSDERISFEVFL 102
I E EAFQLFD D I +++G +LR+LG NP+E ++ K + + +E + F FL
Sbjct: 19 IQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFL 78
Query: 103 PIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
+ K D ++ E + FDKD +G+IS ELR +L +LG +S
Sbjct: 79 TVMSVKLKRG--DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLS 126
Score = 28.4 bits (64), Expect = 1.1
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
+E EAF+LFD D I + ++ VL++LG+ ++ +V+K +++ D I +E F
Sbjct: 92 EELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEF 150
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 49.7 bits (119), Expect = 4e-08
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSD--ERISFEVF 101
E EAF LFD G I ++ +R+LG P + ++K+ D +I FE F
Sbjct: 16 KKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEF 75
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
L I K D ++ ++ R FD D G IS L+ + LG ++
Sbjct: 76 LDI--MTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETIT 124
Score = 28.9 bits (65), Expect = 0.83
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQ--HKSDERISFEVFL 102
+E L+AF+LFD+ KI + + V + LG+ T+ ++++ + D IS E F
Sbjct: 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFY 149
Query: 103 PI 104
I
Sbjct: 150 RI 151
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 39.1 bits (92), Expect = 5e-05
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 119 DFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEV 161
+ E R FDKDG+G IS+ EL+ L +LG L E+E+
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLG-----EGLSEEEI 38
Score = 29.1 bits (66), Expect = 0.26
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 37/100 (37%)
Query: 46 EYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLPIY 105
E EAF+LFD GD I ++ L++LG+ +E
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSE------------------------- 35
Query: 106 QAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLT 145
+ D+ I R DKDG+G I E L+
Sbjct: 36 ---------EEIDEMI---REVDKDGDGKIDFEEFLELMA 63
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 37.2 bits (87), Expect = 1e-04
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 119 DFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
+ E + FDKDG+G+IS+ ELR L +LG
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSLG 30
Score = 31.4 bits (72), Expect = 0.015
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 46 EYLEAFQLFDNRGDNKIHVSQIGNVLRALG 75
E EAF+LFD GD I ++ LR+LG
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSLG 30
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 34.3 bits (80), Expect = 0.001
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 119 DFIEGLRHFDKDGNGFISSAELRHLLTTL 147
+ E + FDKDG+G IS E + LL L
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 33.5 bits (78), Expect = 0.003
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 125 RHFDKDGNGFISSAELRHLLTTL 147
R FDKDG+G I E + LL L
Sbjct: 7 RLFDKDGDGKIDFEEFKDLLKAL 29
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 33.5 bits (77), Expect = 0.006
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 125 RHFDKDGNGFISSAELRHLLTTLGNFMS 152
+ DKDG+G+I ELR LL LG ++
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLT 28
Score = 27.3 bits (61), Expect = 1.1
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 52 QLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKS------DERISFEVFLPIY 105
+L D GD I V ++ +L+ALG T+ +V++ + + D RISFE FL
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 25.8 bits (57), Expect = 3.2
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 93 DERISFEVFLPIYQAISKGRSADTADDFIEGL-RHFDKDGNGFISSAELRHLL 144
D I E + +A+ + + ++ IE DKDG+G IS E +
Sbjct: 8 DGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 31.1 bits (72), Expect = 0.021
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 120 FIEGLRHFDKDGNGFISSAELRHLL 144
+ R FD +G+G IS EL+ LL
Sbjct: 1 LKDLFRQFDTNGDGKISKEELKRLL 25
>gnl|CDD|220944 pfam11018, Cuticle_3, Pupal cuticle protein C1. Insect cuticles
are composite structures whose mechanical properties are
optimised for biological function. The major components
are the chitin filament system and the cuticular
proteins, and the cuticle's properties are determined
largely by the interactions between these two sets of
molecules. The proteins can be ordered by species.
Length = 164
Score = 32.6 bits (74), Expect = 0.048
Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 65 SQIGNVLRALGQNPTECDVKK-----YSQQHKSDERISFEVFLPIYQAI 108
S N +R+ G T K YS KSD RIS + P Y
Sbjct: 7 STHQNTVRSFGGLGTVSHYSKAVDTPYSSVRKSDTRISNNAYQPAYAKT 55
>gnl|CDD|216813 pfam01964, ThiC, ThiC family. ThiC is found within the thiamine
biosynthesis operon. ThiC is involved in pyrimidine
biosynthesis. The precise catalytic function of ThiC is
still not known. ThiC participates in the formation of
4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an
intermediate in the de novo pyrimidine biosynthesis.
Length = 421
Score = 31.3 bits (72), Expect = 0.19
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 103 PIYQAISK--GRSAD-TADDFIEGLRHFDKDGNGFI 135
PIYQA + G D T DD + + KDG F+
Sbjct: 121 PIYQAAERKGGSVVDMTEDDLFDVIEEQAKDGVDFM 156
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 27.1 bits (61), Expect = 0.97
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 92 SDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAE 139
I+ E + S + D R FD DG+G IS E
Sbjct: 1 EKGLITREELKRALALLGISLSEEEVDILF---REFDTDGDGKISFEE 45
>gnl|CDD|225333 COG2706, COG2706, 3-carboxymuconate cyclase [Carbohydrate transport
and metabolism].
Length = 346
Score = 28.8 bits (65), Expect = 1.1
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 56 NRGDNKI---HVSQIGNVLRALGQNPTE 80
NRG + I V G L +G PTE
Sbjct: 262 NRGHDSIAVFSVDPDGGKLELVGITPTE 289
>gnl|CDD|223148 COG0070, GltB, Glutamate synthase domain 3 [Amino acid transport
and metabolism].
Length = 301
Score = 28.8 bits (65), Expect = 1.4
Identities = 12/62 (19%), Positives = 24/62 (38%)
Query: 17 LKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQ 76
L S L + + + + +D L + G+ +++I NV R++G
Sbjct: 4 LDLSPLLYPEDPNTYCEKRQDHGLEPVLDAKLLEDKPALENGEIVKILAEIRNVDRSVGA 63
Query: 77 NP 78
N
Sbjct: 64 NL 65
>gnl|CDD|177643 PHA03415, PHA03415, putative internal virion protein; Provisional.
Length = 1019
Score = 28.5 bits (63), Expect = 2.0
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERI 96
D+ E F FD D K G++L A G T+ ++ ++ +E I
Sbjct: 89 DDRDEMFNDFDPNFDGKREA---GDILNAHGIEDTDDHLEALAKAGSEEEAI 137
>gnl|CDD|236521 PRK09448, PRK09448, DNA starvation/stationary phase protection
protein Dps; Provisional.
Length = 162
Score = 27.3 bits (61), Expect = 2.6
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 104 IYQAISKGRSADTADDFIEGLRHFDKD 130
+ +AI + DTAD F R DK
Sbjct: 126 VRKAIDEAGDEDTADIFTAASRDLDKF 152
>gnl|CDD|222067 pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This
family is closely related to Beta-lactamase, pfam00144,
the serine beta-lactamase-like superfamily, which
contains the distantly related pfam00905 and PF00768
D-alanyl-D-alanine carboxypeptidase.
Length = 197
Score = 27.2 bits (61), Expect = 3.3
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 25 SQVLFKMYGYEPVNKVM-------TSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQN 77
+ +L G + VN + T ++ L + +N + +L AL Q
Sbjct: 80 TNLLIDRLGLDAVNARLKELGLRDTRLNRKLPDLEAAPKDPENTTTARDMARLLEALYQG 139
Query: 78 P 78
Sbjct: 140 E 140
>gnl|CDD|238396 cd00773, HisRS-like_core, Class II Histidinyl-tRNA synthetase
(HisRS)-like catalytic core domain. HisRS is a
homodimer. It is responsible for the attachment of
histidine to the 3' OH group of ribose of the
appropriate tRNA. This domain is primarily responsible
for ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. Class II assignment is based upon
its structure and the presence of three characteristic
sequence motifs. This domain is also found at the
C-terminus of eukaryotic GCN2 protein kinase and at the
N-terminus of the ATP phosphoribosyltransferase
accessory subunit, HisZ. HisZ along with HisG catalyze
the first reaction in histidine biosynthesis. HisZ is
found only in a subset of bacteria and differs from
HisRS in lacking a C-terminal anti-codon binding
domain.
Length = 261
Score = 27.6 bits (62), Expect = 3.3
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 28 LFKMYGYEPVNKVMTSIDEYLEAFQ 52
+F+ YGYE + T + EY E F
Sbjct: 15 VFERYGYEE---IDTPVFEYTELFL 36
>gnl|CDD|218442 pfam05116, S6PP, Sucrose-6F-phosphate phosphohydrolase. This
family consists of Sucrose-6F-phosphate phosphohydrolase
proteins found in plants and cyanobacteria.
Sucrose-6(F)-phosphate phosphohydrolase catalyzes the
final step in the pathway of sucrose biosynthesis.
Length = 247
Score = 27.2 bits (61), Expect = 3.7
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 13/62 (20%)
Query: 67 IGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRH 126
IG V + N ++ Y + + + RI F + GR A +EGL H
Sbjct: 198 IGGVRGVVVGNAQPELLQWYLENARDNPRIYF----------ASGRCAA---GILEGLAH 244
Query: 127 FD 128
F
Sbjct: 245 FG 246
>gnl|CDD|198310 cd03201, GST_C_DHAR, C-terminal, alpha helical domain of
Dehydroascorbate Reductase. Glutathione S-transferase
(GST) C-terminal domain family, Dehydroascorbate
Reductase (DHAR) subfamily; composed of plant-specific
DHARs, which are monomeric enzymes catalyzing the
reduction of DHA into ascorbic acid (AsA) using
glutathione as the reductant. DHAR allows plants to
recycle oxidized AsA before it is lost. AsA serves as a
cofactor of violaxanthin de-epoxidase in the xanthophyll
cycle and as an antioxidant in the detoxification of
reactive oxygen species. Because AsA is the major
reductant in plants, DHAR serves to regulate their redox
state. It has been suggested that a significant portion
of DHAR activity is plastidic, acting to reduce the
large amounts of ascorbate oxidized during hydrogen
peroxide scavenging by ascorbate peroxidase. DHAR
contains a conserved cysteine in its active site and in
addition to its reductase activity, shows thiol
transferase activity similar to glutaredoxins.
Length = 121
Score = 26.6 bits (59), Expect = 4.1
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 14/60 (23%)
Query: 109 SKGRSADTADDFIEGLRHFD---KDGNGFISSA-----------ELRHLLTTLGNFMSWV 154
SK + + ++ L D K FI+ +L HL LG++ W
Sbjct: 24 SKDANDGSEQALLDELTALDEHLKTNGPFIAGEKITAVDLSLAPKLYHLRVALGHYKGWS 83
>gnl|CDD|232978 TIGR00443, hisZ_biosyn_reg, ATP phosphoribosyltransferase,
regulatory subunit. Apparant second copies of
histidyl-tRNA synthetase, found in Bacillus subtilis,
Synechocystis sp., Aquifex aeolicus, and others, are in
fact a regulatory subunit of ATP
phosphoribosyltransferase, and usually encoded by a
gene adjacent to that encoding the catalytic subunit
[Amino acid biosynthesis, Histidine family].
Length = 313
Score = 26.4 bits (59), Expect = 8.4
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 15/44 (34%)
Query: 28 LFKMYGYEPVNKVMTSIDEYLE------------AFQLFDNRGD 59
+F+ +GY+ + +T EYL+ F+LFD G
Sbjct: 21 VFRSWGYQEI---ITPTLEYLDTLSAGSGILNEDLFKLFDQLGR 61
>gnl|CDD|238009 cd00052, EH, Eps15 homology domain; found in proteins implicated in
endocytosis, vesicle transport, and signal transduction.
The alignment contains a pair of EF-hand motifs,
typically one of them is canonical and binds to Ca2+,
while the other may not bind to Ca2+. A hydrophobic
binding pocket is formed by residues from both EF-hand
motifs. The EH domain binds to proteins containing NPF
(class I), [WF]W or SWG (class II), or H[TS]F (class
III) sequence motifs.
Length = 67
Score = 24.9 bits (55), Expect = 8.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 125 RHFDKDGNGFISSAELRHLLTTLG 148
R D DG+G IS E R L G
Sbjct: 6 RSLDPDGDGLISGDEARPFLGKSG 29
>gnl|CDD|131124 TIGR02069, cyanophycinase, cyanophycinase. This model describes
both cytosolic and extracellular cyanophycinases. The
former are part of a system in many Cyanobacteria and a
few other species of generating and later utilizing a
storage polymer for nitrogen, carbon, and energy, called
cyanophycin. The latter are found in species such as
Pseudomonas anguilliseptica that can use external
cyanophycin. The polymer has a backbone of L-aspartic
acid, with most Asp side chain carboxyl groups attached
to L-arginine [Energy metabolism, Other].
Length = 250
Score = 26.2 bits (58), Expect = 8.8
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 7/27 (25%)
Query: 52 QLFDNRGDNKIHVSQIGNVLRALGQNP 78
Q F RG ++G +L A+ QNP
Sbjct: 164 QHFAQRG-------RLGRLLSAISQNP 183
>gnl|CDD|234652 PRK00128, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
Provisional.
Length = 286
Score = 26.3 bits (59), Expect = 8.9
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 33 GYEPVNKVMTSID--EYLEAFQLFDNRGDNKIHVS 65
GY V +M +ID + LE + ++ I V
Sbjct: 24 GYHEVEMIMQTIDLADRLE----IEKLKEDGIVVE 54
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.398
Gapped
Lambda K H
0.267 0.0908 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,247,208
Number of extensions: 728472
Number of successful extensions: 728
Number of sequences better than 10.0: 1
Number of HSP's gapped: 722
Number of HSP's successfully gapped: 41
Length of query: 165
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 75
Effective length of database: 6,945,742
Effective search space: 520930650
Effective search space used: 520930650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.6 bits)