RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13766
(165 letters)
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 139 bits (352), Expect = 4e-43
Identities = 57/122 (46%), Positives = 76/122 (62%), Gaps = 9/122 (7%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE----RISFE 99
D++ EAF LFD GD KI SQ+G++ RALGQNPT ++ K +E I+FE
Sbjct: 7 ADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFE 66
Query: 100 VFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEK 159
FLP+ QA + + T +DF+EGLR FDK+GNG + AELRH+L TLG + E+
Sbjct: 67 EFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGE-----KMTEE 121
Query: 160 EV 161
EV
Sbjct: 122 EV 123
Score = 44.1 bits (105), Expect = 2e-06
Identities = 18/73 (24%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 31 MYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQH 90
M NK + ++++E ++FD G+ + +++ +VL LG+ TE +V++ +
Sbjct: 71 MLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQ 130
Query: 91 K-SDERISFEVFL 102
+ S+ I++E F+
Sbjct: 131 EDSNGCINYEAFV 143
Score = 34.0 bits (79), Expect = 0.007
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 113 SADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
S ADDF E FD+ G+ I+++++ + LG
Sbjct: 3 SKAAADDFKEAFLLFDRTGDAKITASQVGDIARALG 38
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 136 bits (346), Expect = 4e-42
Identities = 61/113 (53%), Positives = 79/113 (69%), Gaps = 4/113 (3%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE----RISFE 99
++E+ EAF+LFD GD KI SQ G+V+RALGQNPT +V K KSDE R+ FE
Sbjct: 9 LEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFE 68
Query: 100 VFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
FLP+ QA++K R T +D++EG R FDK+GNG + AELRH+LTTLG M+
Sbjct: 69 TFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMT 121
Score = 44.1 bits (105), Expect = 2e-06
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 31 MYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQH 90
M N+ + ++YLE F++FD G+ K+ +++ +VL LG+ TE +V+ H
Sbjct: 73 MLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGH 132
Query: 91 K-SDERISFEVFL 102
+ S+ I++E FL
Sbjct: 133 EDSNGCINYEAFL 145
Score = 33.0 bits (76), Expect = 0.017
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 113 SADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
+ D ++F E FD+ G+G I ++ ++ LG
Sbjct: 5 NKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALG 40
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 135 bits (343), Expect = 7e-42
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 42 TSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVF 101
T Y +AF LFD G +I + IG++LRA GQNPT ++ + + E F
Sbjct: 2 TDDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIEST--LPAEVDMEQF 59
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
L + + ++F++G + FDKD G I ELR++LT+LG
Sbjct: 60 LQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLG 106
Score = 43.6 bits (104), Expect = 2e-06
Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 30 KMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKK-YSQ 88
++ + +E+++ FQ+FD I V ++ VL +LG+ + ++ +
Sbjct: 61 QVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKG 120
Query: 89 QHKSDERISFEVFL 102
D +++ F+
Sbjct: 121 VPVKDGMVNYHDFV 134
Score = 36.3 bits (85), Expect = 0.001
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 114 ADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
+ + + FD+ G G I + LL G
Sbjct: 1 STDDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACG 35
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 135 bits (342), Expect = 2e-41
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 8/121 (6%)
Query: 44 IDEYLEAFQLFDNR--GDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE-RISFEV 100
I+E E F LFD D + +++G++LR LG NPTE V ++ K E E
Sbjct: 8 IEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGTKKMGEKAYKLEE 67
Query: 101 FLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKE 160
LPIY+ +S + AD+F+E + FD++G G ISSAE+R++L LG + E +
Sbjct: 68 ILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGE-----RITEDQ 122
Query: 161 V 161
Sbjct: 123 C 123
Score = 43.7 bits (104), Expect = 3e-06
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 31 MYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPT--ECD--VKKY 86
+Y T+ DE++EAF+ FD G I ++I NVL+ LG+ T +C+
Sbjct: 71 IYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFC 130
Query: 87 SQQHKSDERISFEVFL 102
+ D I +E +
Sbjct: 131 DIREDIDGNIKYEDLM 146
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 129 bits (328), Expect = 1e-39
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 43 SIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFL 102
S D+ E FQ+FD D K+ + ++G+ LR+LG+NPT ++ Q + E F
Sbjct: 3 SADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKE-FDLATFK 61
Query: 103 PIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
+Y+ K + + + + ++ R DK+GNG I AELR LL LG+ ++
Sbjct: 62 TVYRKPIKTPT-EQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALT 110
Score = 36.7 bits (86), Expect = 7e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 115 DTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
+AD E + FDKD +G +S EL L +LG
Sbjct: 2 ASADQIQECFQIFDKDNDGKVSIEELGSALRSLG 35
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 127 bits (322), Expect = 1e-38
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 42 TSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE---RISF 98
++ + F LFD +G I +G+ LRA+G NPT V+ S ++
Sbjct: 1 SATRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTL 60
Query: 99 EVFLPIYQAISKGR---SADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVN 155
+ + + K + +DF++ + FDK+ G +S +LR++LT LG
Sbjct: 61 DQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGE-----K 115
Query: 156 LVEKEV 161
L + EV
Sbjct: 116 LTDAEV 121
Score = 42.2 bits (100), Expect = 1e-05
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 39 KVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RI 96
+++++AFQ+FD K+ V + +L LG+ T+ +V + + + D I
Sbjct: 77 TTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEI 136
Query: 97 SFEVFL 102
++ F+
Sbjct: 137 DYKKFI 142
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 126 bits (319), Expect = 4e-38
Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLP 103
+DE + KI + R LG P+ D KK + + + +++E +L
Sbjct: 14 VDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELY--GDNLTYEQYLE 71
Query: 104 IYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
+ D ++ I+ HFD + G+++ ++++++LTT G+ ++
Sbjct: 72 YLSICVHDK--DNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALT 118
Score = 46.8 bits (112), Expect = 2e-07
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 39 KVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISF 98
+++E ++ F FDN + SQ+ N+L G T+ + S++ I +
Sbjct: 78 HDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAFSSEDNIDY 137
Query: 99 EVFL 102
++F
Sbjct: 138 KLFC 141
Score = 33.7 bits (78), Expect = 0.011
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 113 SADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
+ D+ + +K G IS + LG
Sbjct: 10 LEEKVDESDVRIYFNEKSSGGKISIDNASYNARKLG 45
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 126 bits (319), Expect = 5e-38
Identities = 46/121 (38%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 44 IDEYLEAFQLFDNR--GDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE-RISFEV 100
ID+ + F+LFD D + ++G+V R LG NP DV HK E + FE
Sbjct: 8 IDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEE 67
Query: 101 FLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKE 160
FLP Y+ + T D++E + FD++G GFIS AELRH+LT LG L +++
Sbjct: 68 FLPAYEGLMDCEQ-GTFADYMEAFKTFDREGQGFISGAELRHVLTALGE-----RLSDED 121
Query: 161 V 161
V
Sbjct: 122 V 122
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 122 bits (309), Expect = 1e-36
Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
I E+ EAF LFD GD I ++G V+R+LGQNPTE +++ + +D I F F
Sbjct: 9 IAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 68
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
L + K + D+ ++ IE + FD+DGNG IS+AELRH++T LG ++
Sbjct: 69 LSLMA--RKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLT 117
Score = 39.4 bits (93), Expect = 1e-04
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 38 NKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--R 95
K S +E +EAF++FD G+ I +++ +V+ LG+ T+ +V + ++ D
Sbjct: 76 MKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGH 135
Query: 96 ISFEVFL 102
I++E F+
Sbjct: 136 INYEEFV 142
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 120 bits (303), Expect = 1e-35
Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
I E+ EAF LFD I S++ V+R+LG +P+E +V + D I F F
Sbjct: 10 IAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEF 69
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
L + K D+ + +E + FDK+G+G IS+AEL+H+LT++G ++
Sbjct: 70 LALMSRQLKCN--DSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLT 118
Score = 38.6 bits (91), Expect = 2e-04
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHK-SDERISFE 99
S E LEAF++FD GD I +++ +VL ++G+ T+ +V + ++ I+ +
Sbjct: 80 NDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVSDGSGEINIK 139
Query: 100 VFLPI 104
F +
Sbjct: 140 QFAAL 144
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 116 bits (292), Expect = 4e-34
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLP 103
I E+ EAF + D D I + ++L ++G+NPT+ ++ + + I+F +FL
Sbjct: 6 IQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE--APGPINFTMFLT 63
Query: 104 IYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
++ G D D FD++ +GFI LR LLTT+G+ +
Sbjct: 64 MFGEKLNGT--DPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFT 110
Score = 38.6 bits (91), Expect = 2e-04
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVK 84
D AF FD IH + +L +G T+ +V
Sbjct: 76 DVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVD 115
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 114 bits (288), Expect = 4e-33
Identities = 47/111 (42%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
I E+ EAF LFD GD I ++G V+R+LGQNPTE +++ + +D I F F
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
L + K + D+ ++ E R FDKDGNG+IS+AELRH++T LG ++
Sbjct: 70 LTMMA--RKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLT 118
Score = 65.6 bits (161), Expect = 3e-14
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISF 98
S +E EAF++FD G+ I +++ +V+ LG+ T+ +V + ++ D ++++
Sbjct: 80 TDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 139
Query: 99 EVFLPIYQAISKGRSADTADDFI-EGLRHFDKDGNGFIS 136
E F+ + A G A + I +R K F
Sbjct: 140 EEFVQMMTAKGGGGGAAARKEVIRNKIRAIGKMARVFSV 178
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 112 bits (283), Expect = 1e-32
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLP 103
+ E EAF + D D I + + ++ +LG+ P + ++ ++ +++F FL
Sbjct: 15 MQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC--PGQLNFTAFLT 72
Query: 104 IYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEV 161
++ G D D FD+DG GFI L+ LL +G+ N ++E+
Sbjct: 73 LFGEKVSGT--DPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGD-----NFSKEEI 123
Score = 41.0 bits (97), Expect = 3e-05
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKK-YSQQHKSDERISFE 99
D AF +FD G I + ++L +G N ++ ++K + +++ ++
Sbjct: 81 TDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLKNKQFNYN 140
Query: 100 VFL 102
+
Sbjct: 141 KMV 143
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 117 bits (294), Expect = 7e-32
Identities = 50/120 (41%), Positives = 70/120 (58%), Gaps = 9/120 (7%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
I E+ EAF LFD GD I ++G V+R+LGQNPTE +++ + +D I F F
Sbjct: 311 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 370
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEV 161
L + K D+ ++ E R FDKDGNG+IS+AELRH++T LG L ++EV
Sbjct: 371 LTMMARKMKDT--DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE-----KLTDEEV 423
Score = 55.7 bits (134), Expect = 6e-10
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 24/113 (21%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQ---QHKSDERISFEV 100
+ Y++ +F + G T +VK + I F+
Sbjct: 246 PEGYIQERTIFF----------------KDDGNYKTRAEVKFEGDTLVNRIELKGIDFKE 289
Query: 101 FLPIYQAISKGRSADTADD-----FIEGLRHFDKDGNGFISSAELRHLLTTLG 148
I + + D + F E FDKDG+G I++ EL ++ +LG
Sbjct: 290 DGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG 342
Score = 40.3 bits (94), Expect = 1e-04
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 39 KVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTE 80
K S +E EAF++FD G+ I +++ +V+ LG+ T+
Sbjct: 379 KDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTD 420
Score = 35.6 bits (82), Expect = 0.004
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 118 DDFIEGLRHFDKDGNGFISSAELRHLLTTLGN 149
+ +I+ F KD + + AE++ TL N
Sbjct: 247 EGYIQERTIFFKDDGNYKTRAEVKFEGDTLVN 278
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 109 bits (275), Expect = 1e-31
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
+ E+ EAF+LFD+ I + VL+ G + + + +I F F
Sbjct: 5 VSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEF 64
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
L + K + D + R FD +G G+I A L+ L LG+ +
Sbjct: 65 LSMMGRRMKQT--TSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLK 113
Score = 38.6 bits (91), Expect = 2e-04
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKK-YSQQHKSDERISFE 99
TS D +AF+ FD G I + + + L LG + + +I ++
Sbjct: 75 TTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITETEKGQIRYD 134
Query: 100 VFL 102
F+
Sbjct: 135 NFI 137
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 107 bits (269), Expect = 4e-30
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLP 103
+ E+ EAFQL D D I + I +LG+ TE ++ + + I+F +FL
Sbjct: 56 VQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAE--APGPINFTMFLT 113
Query: 104 IYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEV 161
I+ G D D + FD +G+G L+ LTT G + EV
Sbjct: 114 IFGDRIAGT--DEEDVIVNAFNLFD-EGDGKCKEETLKRSLTTWGE-----KFSQDEV 163
Score = 36.9 bits (86), Expect = 0.001
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVFL 102
D + AF LFD GD K + L G+ ++ +V + + D I + F
Sbjct: 126 DVIVNAFNLFDE-GDGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFA 184
Query: 103 PIYQAISKGRSADTA 117
Q ++KG + A
Sbjct: 185 ---QILTKGAKEEGA 196
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 104 bits (261), Expect = 3e-29
Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLP 103
I E EAF + D D + I + LG+ P + ++ ++ + ++F +FL
Sbjct: 17 IQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKE--APGPLNFTMFLS 74
Query: 104 IYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
I+ G D+ + FD+ ++ ++ LL +G+ +
Sbjct: 75 IFSDKLSGT--DSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFN 121
Score = 37.9 bits (89), Expect = 3e-04
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVK 84
+ AF +FD + K+++ I ++L +G N + +++
Sbjct: 87 ETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMR 126
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 102 bits (257), Expect = 1e-28
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
I E+ AF +FD G I ++G V+R LGQNPT+ ++ ++ D I FE F
Sbjct: 19 IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEF 78
Query: 102 LPIYQAISKGRSA-DTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
L + K + + ++ R FDK+ +GFI EL +L G ++
Sbjct: 79 LVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVT 130
Score = 37.9 bits (89), Expect = 4e-04
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 43 SIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVK 84
S +E F++FD D I + ++G +LRA G++ TE D++
Sbjct: 94 SEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIE 135
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 102 bits (257), Expect = 1e-28
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLP 103
I+++ EAF + D D I + A+G+ + + + ++ I+F VFL
Sbjct: 24 IEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELD-AMIKEASGPINFTVFLT 82
Query: 104 IYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
++ KG D D + + D DG G I + L LLTT G +
Sbjct: 83 MFGEKLKGA--DPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFT 129
Score = 38.7 bits (91), Expect = 2e-04
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVK 84
D + AF++ D G I S + +L G T ++K
Sbjct: 95 DVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIK 134
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 97.9 bits (245), Expect = 5e-27
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
E EAF LFD G I V ++ +RALG P + ++KK + + +++F F
Sbjct: 5 KQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDF 64
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
L + K DT ++ ++ + FD D G IS L+ + LG ++
Sbjct: 65 LTV--MTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLT 113
Score = 37.8 bits (89), Expect = 4e-04
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVK 84
+ +E L+AF+LFD+ KI + V + LG+N T+ +++
Sbjct: 75 KDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQ 118
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 98.0 bits (245), Expect = 7e-27
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
E EAF LFD D + ++ ++ALG + ++ ++ S+ + ++ F
Sbjct: 22 KQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDF 81
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
+ K D D+ + FD D G IS LR + LG ++
Sbjct: 82 YIV--MGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLT 130
Score = 38.3 bits (90), Expect = 3e-04
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVK 84
+DE AFQLFD+ KI + + V + LG+ T+ +++
Sbjct: 92 RDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELR 135
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 98.0 bits (245), Expect = 9e-27
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
E EAF LFD G I ++ +RALG P + ++KK + D I FE F
Sbjct: 27 KQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEF 86
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
L + +K D+ ++ ++ R FD D +G I+ +LR + LG ++
Sbjct: 87 LTM--MTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLT 135
Score = 38.3 bits (90), Expect = 3e-04
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVK 84
S +E L+AF+LFD+ I + + V + LG+N TE +++
Sbjct: 97 RDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQ 140
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 97.2 bits (243), Expect = 2e-26
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 44 IDEYLEAFQLFD-NRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEV 100
+E+ AF +F D I ++G V+R LGQNPT ++++ + D + F+
Sbjct: 17 KNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDE 76
Query: 101 FLPIYQAISKGRSA-DTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
FL + K S + ++ + R FDK+ +G+I EL+ +L G ++
Sbjct: 77 FLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETIT 129
Score = 37.5 bits (88), Expect = 5e-04
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVK 84
S +E + F++FD D I + ++ +L+A G+ TE D++
Sbjct: 91 GKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIE 134
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 96.1 bits (240), Expect = 3e-26
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 44 IDEYLEAFQLFDNR-GDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEV 100
+ AF+ F+ G ++ QIG +L LG T+ +++ + I F+
Sbjct: 12 VKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDS 71
Query: 101 FLPIY--QAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
F I + + E R +DK+GNG+IS+ +R +L L +S
Sbjct: 72 FKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLS 125
Score = 37.2 bits (87), Expect = 6e-04
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 39 KVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVK 84
E EAF+L+D G+ I + +L L + + D+
Sbjct: 85 NPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLD 130
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 95.3 bits (238), Expect = 7e-26
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
I+E EAF+ FD D I+ +GN +R +G PTE ++ + SQQ + + F+ F
Sbjct: 10 IEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDF 69
Query: 102 LPIYQAISKGRSADTA--DDFIEGLRHFDKDGNGFISSAELRHLLT-TLGNFMS 152
+ + +AD + + R FD +G+G IS++ELR + LG+ +
Sbjct: 70 VELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVG 123
Score = 33.3 bits (77), Expect = 0.017
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRA-LGQNPTECDVK 84
M + E +AF+ FD GD +I S++ +RA LG D++
Sbjct: 84 MIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIE 128
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 93.4 bits (232), Expect = 5e-24
Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 43 SIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHK--------SDE 94
+ ++ E + FD G + ++ N+++ L Q + ++ + D
Sbjct: 14 TASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDG 73
Query: 95 RISFEVFLPIYQ------AISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
+I + + + + + ++F++ R +D D +GFI + EL++ L L
Sbjct: 74 KIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLL 133
Score = 75.7 bits (186), Expect = 2e-17
Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 17/143 (11%)
Query: 23 QFSQVLFKMYGYEPVNKV--MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTE 80
+ + VL + + + + S +E+++ ++ +D I ++ N L+ L + +
Sbjct: 79 ELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANK 138
Query: 81 CDVKKYSQQ----------HKSDERISFEVFLPIYQAISKG-----RSADTADDFIEGLR 125
+ +D ++ + +F +
Sbjct: 139 TVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFE 198
Query: 126 HFDKDGNGFISSAELRHLLTTLG 148
+D+DGNG+I EL LL L
Sbjct: 199 LYDQDGNGYIDENELDALLKDLC 221
Score = 42.2 bits (99), Expect = 2e-05
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 113 SADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEVI 162
S TA F E HFD DG+G++ EL++L+ L L +
Sbjct: 11 SLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEM 60
Score = 34.8 bits (80), Expect = 0.007
Identities = 10/79 (12%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 30 KMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTE----CDVKK 85
+ + E+ +AF+L+D G+ I +++ +L+ L + + ++
Sbjct: 176 QENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNIST 235
Query: 86 YSQQHKS---DERISFEVF 101
Y + + ++
Sbjct: 236 YKKNIMALSDGGKLYRTDL 254
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 90.0 bits (224), Expect = 2e-23
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
I E F++ D I ++ + L+ +G E ++K D+ I + F
Sbjct: 9 IGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEF 68
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
+ A + ++ + +FDKDG+G+I+ E++ G
Sbjct: 69 I---AATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFG 112
Score = 53.8 bits (130), Expect = 9e-10
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 9/111 (8%)
Query: 39 KVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECD--VKKYSQQHKSDERI 96
+ + + AF FD G I + +I + G + D +K+ Q + D +I
Sbjct: 76 NKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDDMIKEIDQDN--DGQI 133
Query: 97 SFEVFLPIYQAISKGRSAD-----TADDFIEGLRHFDKDGNGFISSAELRH 142
+ F + + + + L D N I H
Sbjct: 134 DYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEGYFKHH 184
Score = 34.9 bits (81), Expect = 0.005
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 121 IEGLR----HFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEV 161
I GL+ D D +G I+ EL+ L +G+ L+E E+
Sbjct: 9 IGGLKELFKMIDTDNSGTITFDELKDGLKRVGS-----ELMESEI 48
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 88.0 bits (219), Expect = 8e-23
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
I E F + D +I ++ L+ +G N E ++ Q D I ++ F
Sbjct: 26 IAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEF 85
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
+ A + D +FDKDG+G+I+ EL+ G
Sbjct: 86 I---AATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFG 129
Score = 34.4 bits (80), Expect = 0.007
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Query: 121 IEGLR----HFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEV 161
I GL+ D D +G I+ EL+ L +G NL E E+
Sbjct: 26 IAGLKEMFNMIDADKSGQITFEELKAGLKRVGA-----NLKESEI 65
Score = 33.3 bits (77), Expect = 0.017
Identities = 8/44 (18%), Positives = 12/44 (27%)
Query: 39 KVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECD 82
+ D AF FD G I ++ G +
Sbjct: 93 NKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFGVEDVRIE 136
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 85.3 bits (212), Expect = 3e-22
Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
Query: 49 EAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVFLPIYQ 106
F+ D GD + ++ + E ++ + +D I F Y
Sbjct: 4 ALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63
Query: 107 AISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
+I +D + D DG+G ++ E+ G
Sbjct: 64 SIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHG 105
Score = 35.6 bits (83), Expect = 0.002
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 125 RHFDKDGNGFISSAELRHLLTTLGNFMS 152
+ D +G+G +S E++ ++ +
Sbjct: 7 KEIDVNGDGAVSYEEVKAFVSKKRAIKN 34
Score = 29.4 bits (67), Expect = 0.29
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALG 75
++L D GD K+ ++ + + G
Sbjct: 75 IGLKVLYKLMDVDGDGKLTKEEVTSFFKKHG 105
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 82.5 bits (204), Expect = 2e-20
Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 20/129 (15%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQI-----GNVLRALGQNPTECDVKKYSQQ-------HK 91
I + F D G+ KI + +I ++ L P + + + +
Sbjct: 19 IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGME 78
Query: 92 SDERISFEVFLPIYQAISKGRSADTADDFIEGL--------RHFDKDGNGFISSAELRHL 143
+ I+F FL ++ ++ A + + FDKDG+G I+ E +
Sbjct: 79 YGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAY 138
Query: 144 LTTLGNFMS 152
G S
Sbjct: 139 GKISGISPS 147
Score = 32.4 bits (74), Expect = 0.034
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVK 84
+ F +FD G I + + + G +P++ D +
Sbjct: 113 EWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCE 152
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 79.9 bits (198), Expect = 2e-19
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
I+ F D + +I + L+ +G D+ + + S+ +I + F
Sbjct: 56 INNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDF 115
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLL 144
L A ++ + + + FD DGNG IS EL+ +
Sbjct: 116 L---AATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIF 155
Score = 30.6 bits (70), Expect = 0.15
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 18/73 (24%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRA--LGQNPT---------ECDVKKYSQQ 89
+ L F+ FD G+ KI V ++ + + E D+
Sbjct: 125 YLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNG---- 180
Query: 90 HKSDERISFEVFL 102
D I F F+
Sbjct: 181 ---DGEIDFHEFM 190
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 78.5 bits (194), Expect = 6e-19
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 11/118 (9%)
Query: 33 GYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKS 92
Y P + M E +E F+ D G I V ++ L + G + +K +
Sbjct: 15 VYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDK 74
Query: 93 DE--RISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
+ I+F+ F ++ I R F R D G+G + S E+R L + G
Sbjct: 75 NHSGEITFDEFKDLHHFILSMREG-----F----RKRDSSGDGRLDSNEVRAALLSSG 123
Score = 53.1 bits (128), Expect = 2e-09
Identities = 15/102 (14%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 39 KVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQN--PTECD--VKKYSQQHKSDE 94
+ I E F+ D+ GD ++ +++ L + G ++K+ +Q
Sbjct: 87 DLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQR--RG 144
Query: 95 RISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFIS 136
+ F+ ++ + + + R+ F +D++ G ++
Sbjct: 145 SLGFDDYVELSIFVCRVRNV-----F----AFYDRERTGQVT 177
Score = 27.3 bits (61), Expect = 2.1
Identities = 2/27 (7%), Positives = 9/27 (33%)
Query: 39 KVMTSIDEYLEAFQLFDNRGDNKIHVS 65
++ + F +D ++ +
Sbjct: 153 ELSIFVCRVRNVFAFYDRERTGQVTFT 179
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 78.1 bits (193), Expect = 7e-19
Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 7/120 (5%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
+++ F + D G I Q+ L G + Q SD +I + F
Sbjct: 51 VEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPY-NFDLLLDQIDSDGSGKIDYTEF 109
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEV 161
+ A + R + R FD D +G I++AEL H+L + V
Sbjct: 110 I----AAALDRKQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRV 165
Score = 34.1 bits (79), Expect = 0.009
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 21/80 (26%)
Query: 37 VNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPT--------------ECD 82
+++ S AF++FD D +I +++ ++L + + D
Sbjct: 114 LDRKQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVD 173
Query: 83 VKKYSQQHKSDERISFEVFL 102
D +I F F
Sbjct: 174 KNN-------DGKIDFHEFS 186
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 77.9 bits (192), Expect = 1e-18
Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 20/129 (15%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVS-----QIGNVLRALGQNPTECDVKKYSQQ-------HK 91
I + F D + KI + V+ LG P + K + + K
Sbjct: 15 IGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMK 74
Query: 92 SDERISFEVFLPIYQAISKGRSADTADDFIEGL--------RHFDKDGNGFISSAELRHL 143
+ ++ ++ ++ A + + DKD NG I+ E +
Sbjct: 75 YGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAY 134
Query: 144 LTTLGNFMS 152
G S
Sbjct: 135 TKAAGIIQS 143
Score = 34.8 bits (80), Expect = 0.006
Identities = 7/51 (13%), Positives = 16/51 (31%)
Query: 35 EPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKK 85
N+ F + D + I + + +A G + D ++
Sbjct: 99 YAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEE 149
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 75.6 bits (186), Expect = 4e-17
Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 11/107 (10%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
+ + F G K + VL E +KK ++D R+S+
Sbjct: 121 TNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITL 180
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
+ + ++ + F R D + NG +S E R LG
Sbjct: 181 VAVANDLAALVAD-----F----RKIDTNSNGTLSRKEFREHFVRLG 218
Score = 58.3 bits (141), Expect = 8e-11
Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 14/112 (12%)
Query: 40 VMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECD---VKKYSQQHKSDERI 96
V + + F+ D + + + LG + + + + +
Sbjct: 183 VANDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDE--SDDV 240
Query: 97 SFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
F ++ + + R + D D +G +S E++ +L
Sbjct: 241 GFSEYVHLGLCLLVLRIL-----Y----AFADFDKSGQLSKEEVQKVLEDAH 283
Score = 44.4 bits (105), Expect = 4e-06
Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 4/109 (3%)
Query: 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTEC-DVKKYSQQHKSDERISFEVFLP 103
E +D + N+ + R + + S ++ S L
Sbjct: 51 QEQKAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNRLR 110
Query: 104 IYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
S + + + G+G S +L+ +L + +
Sbjct: 111 P---SKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIP 156
Score = 26.3 bits (58), Expect = 5.7
Identities = 4/35 (11%), Positives = 10/35 (28%)
Query: 110 KGRSADTADDFIEGLRHFDKDGNGFISSAELRHLL 144
+ + A + L +D+ + E
Sbjct: 43 EAQIAQKEQEQKAKLAEYDQKVQNEFDARERAERE 77
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 72.0 bits (176), Expect = 5e-16
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 20/126 (15%)
Query: 43 SIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQ--NPTECDVKKYSQQHKS-------- 92
+L+ +Q FD + I ++ + R + + P + + QQ K
Sbjct: 9 DAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDA 68
Query: 93 --DERISFEVFLPIYQAISKGRSA--------DTADDFIEGLRHFDKDGNGFISSAELRH 142
D R+ E + + D + +F++ R +D D +G+IS+AEL++
Sbjct: 69 TFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKN 128
Query: 143 LLTTLG 148
L L
Sbjct: 129 FLKDLF 134
Score = 58.2 bits (140), Expect = 6e-11
Identities = 15/129 (11%), Positives = 39/129 (30%), Gaps = 19/129 (14%)
Query: 39 KVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQH-------- 90
+ + E+++ ++ +D I +++ N L+ L + ++
Sbjct: 98 APLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIF 157
Query: 91 --KSDERISFEVFLPIYQA---------ISKGRSADTADDFIEGLRHFDKDGNGFISSAE 139
D R+ I + + DF + H+D G + E
Sbjct: 158 DKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPE 217
Query: 140 LRHLLTTLG 148
+ + +
Sbjct: 218 VDGFVKDMM 226
Score = 39.3 bits (91), Expect = 3e-04
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 113 SADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEVI 162
+ A F++ +HFD D NG+I EL + + + + E +
Sbjct: 6 ANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERV 55
Score = 33.9 bits (77), Expect = 0.014
Identities = 12/111 (10%), Positives = 29/111 (26%), Gaps = 29/111 (26%)
Query: 39 KVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISF 98
+ ++ + F +D + ++ ++ + + IS
Sbjct: 190 SQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMME--------------LVRPSISG 235
Query: 99 EVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGN 149
+ + L H D + +G I +EL L
Sbjct: 236 GDLDKFRECL---------------LTHCDMNKDGKIQKSELALCLGLKHK 271
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 70.5 bits (173), Expect = 8e-16
Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 5/110 (4%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
I F+ D G + + L LG + + + ++ + + E F
Sbjct: 36 IQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEF 95
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFM 151
L +A+ S D+ G+G ++ +LR + + +
Sbjct: 96 L---RALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPK 142
Score = 38.5 bits (90), Expect = 3e-04
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 12/95 (12%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRA-------LGQNPTECDVK---KYSQQH 90
AF D GD + V + V G+ + ++
Sbjct: 105 QAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSS 164
Query: 91 KSDERISFEVFLPIYQAISKGRSADTADDFIEGLR 125
+ D +++ F Y +S + D ++F+ +
Sbjct: 165 EKDGQVTLAEFQDYYSGVSASMNTD--EEFVAMMT 197
Score = 36.2 bits (84), Expect = 0.002
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 112 RSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEV 161
R A R D+DG+ + + E R L LG + L + E
Sbjct: 31 RGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLG-----LVLDQAEA 75
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 66.9 bits (164), Expect = 1e-15
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
EY EAFQLFD DNK+ ++G V+RALG NPT+ + + + + D + E F
Sbjct: 13 QQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETF 72
Query: 102 LPIYQAISKGR 112
L I +
Sbjct: 73 LTIMLEYGQEV 83
Score = 39.6 bits (93), Expect = 3e-05
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 110 KGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
K +A+ ++ E + FDKD + +++ EL ++ LG +
Sbjct: 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPT 48
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 68.5 bits (168), Expect = 4e-15
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 16/118 (13%)
Query: 44 IDEYLEAFQLFDNRGDNKI-----------HVSQIGNVLRALGQNPTECDVKKYSQQHKS 92
E + F+ DN GD ++ + G+ + L + E +V Q
Sbjct: 39 TKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDF 98
Query: 93 DE--RISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
D I + F+ + + + + + FD DG+G I++ EL L
Sbjct: 99 DRNGYIEYSEFV---TVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTE 153
Score = 31.5 bits (72), Expect = 0.073
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 118 DDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWV------NLVEKEV 161
+ + R D +G+G + EL L + + +E EV
Sbjct: 40 KELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEV 89
Score = 29.2 bits (66), Expect = 0.45
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 14/69 (20%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPT-------ECDVKKYSQQHKSD 93
+ S + L AFQ FD+ G KI ++G + + ECD D
Sbjct: 119 LLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQECDKNN-------D 171
Query: 94 ERISFEVFL 102
+ FE F+
Sbjct: 172 GEVDFEEFV 180
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 67.9 bits (166), Expect = 4e-15
Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 22/127 (17%)
Query: 44 IDEYLEAFQLFDNRGDNKI----HVSQIGNVLRALGQNPTECDVKKYSQQHKS------- 92
D + F +D G+ + + ++ A G++ +V+
Sbjct: 6 SDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAK 65
Query: 93 ------DERISFEVFLPIYQAISKGRSADTADDFIEGL-----RHFDKDGNGFISSAELR 141
D ++ E F+ + + + + + + + + DK+ +G I++ E
Sbjct: 66 EAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFA 125
Query: 142 HLLTTLG 148
LT LG
Sbjct: 126 AWLTALG 132
Score = 34.7 bits (80), Expect = 0.006
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 113 SADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSW 153
+A +D + +D DGNG + A+ +
Sbjct: 2 TAIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGK 42
Score = 32.8 bits (75), Expect = 0.028
Identities = 17/96 (17%), Positives = 25/96 (26%), Gaps = 39/96 (40%)
Query: 49 EAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQAI 108
+ D D +I+ + L ALG + E E F
Sbjct: 106 GIVGMCDKNADGQINADEFAAWLTALGMSKAEAA----------------EAF------- 142
Query: 109 SKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLL 144
D +GNG +S EL +
Sbjct: 143 ----------------NQVDTNGNGELSLDELLTAV 162
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 67.2 bits (164), Expect = 2e-14
Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 19/124 (15%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQN--PTECDVKKYSQQHKS--------- 92
+ + F FD D K+ + ++ + Q T+ V+K +
Sbjct: 35 LSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEP 94
Query: 93 DERISFEVFLPIYQAISK--------GRSADTADDFIEGLRHFDKDGNGFISSAELRHLL 144
+ E ++ + ++ G + A D DG+G + EL+ ++
Sbjct: 95 VNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMM 154
Query: 145 TTLG 148
Sbjct: 155 KAFD 158
Score = 35.6 bits (82), Expect = 0.003
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 121 IEGLRH----FDKDGNGFISSAELRHLLTTLGNFMSW 153
+ L FD D +G + E+ + + ++
Sbjct: 35 LSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNA 71
Score = 29.4 bits (66), Expect = 0.39
Identities = 5/34 (14%), Positives = 14/34 (41%)
Query: 49 EAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECD 82
+ + D+ GD + V ++ +++A
Sbjct: 132 SYYDVLDDDGDGTVDVDELKTMMKAFDVPQEAAY 165
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 66.6 bits (163), Expect = 2e-14
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 8/107 (7%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
I E F D + + +I VL ++G + + + Q ++ I++ F
Sbjct: 38 IKYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWD--INRILQALDINDRGNITYTEF 95
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
+ A + DKD +G+IS +++ L+
Sbjct: 96 M----AGCYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKV 138
Score = 28.4 bits (64), Expect = 0.89
Identities = 12/74 (16%), Positives = 19/74 (25%), Gaps = 8/74 (10%)
Query: 37 VNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPT-------ECDVKK-YSQ 88
AF D D I S I +++ + K
Sbjct: 100 YRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKVLDNNDIDNFFLSVHSIKKGIP 159
Query: 89 QHKSDERISFEVFL 102
+ +ISF+ F
Sbjct: 160 REHIINKISFQEFK 173
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 65.5 bits (160), Expect = 3e-14
Identities = 23/125 (18%), Positives = 36/125 (28%), Gaps = 21/125 (16%)
Query: 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKS------------ 92
F FD G+ I S +A+ Q
Sbjct: 4 RRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGI 63
Query: 93 -----DERISFEVFLPIYQAISKGRSADTADDFIEGLRH----FDKDGNGFISSAELRHL 143
D+RI+ E F+ + + A+ L D DG+G ++ A+
Sbjct: 64 ADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARA 123
Query: 144 LTTLG 148
LT G
Sbjct: 124 LTAFG 128
Score = 35.5 bits (82), Expect = 0.003
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 125 RHFDKDGNGFISSAELRHLLTTLGNFMSW 153
FD+DGNG I ++ +
Sbjct: 11 TTFDQDGNGHIDRSDFSGAAKAMLAEFGV 39
Score = 33.6 bits (77), Expect = 0.012
Identities = 16/123 (13%), Positives = 26/123 (21%), Gaps = 39/123 (31%)
Query: 23 QFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECD 82
+F K +P + A + D GD + V+ L A G
Sbjct: 76 EFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAFGVPEDLAR 135
Query: 83 VKKYSQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRH 142
+ D DG+G + E+
Sbjct: 136 ----------------QAA-----------------------AALDTDGDGKVGETEIVP 156
Query: 143 LLT 145
Sbjct: 157 AFA 159
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 64.2 bits (157), Expect = 9e-14
Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 12/111 (10%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNP-TECDVKKYSQQHKSDE--RIS 97
+ FQ D I +++ L P V+ + ++
Sbjct: 3 LPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVN 62
Query: 98 FEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
F F +++ I+ ++ F R +D+D +G I EL+ L+ G
Sbjct: 63 FSEFTGVWKYITDWQNV-----F----RTYDRDNSGMIDKNELKQALSGFG 104
Score = 46.1 bits (110), Expect = 6e-07
Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 15/111 (13%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQ--NPTECD--VKKYSQQHKSDERI 96
I ++ F+ +D I +++ L G + D ++K+ + + +I
Sbjct: 70 WKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDR--QGRGQI 127
Query: 97 SFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTL 147
+F+ F+ + + F R +D D +G+I + ++L
Sbjct: 128 AFDDFIQGCIVLQRLTDI-----F----RRYDTDQDGWIQVSYEQYLSMVF 169
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 63.8 bits (156), Expect = 1e-13
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 10/119 (8%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLP 103
I + F+ D + V + + L L QNP V + E + F+ F+
Sbjct: 5 IKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQQNPLVQRVIDIFDTDGNGE-VDFKEFI- 61
Query: 104 IYQAIS-KGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEV 161
+ +S D R +D D +G+IS+ EL +L M NL + ++
Sbjct: 62 --EGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKM----MVGNNLKDTQL 114
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 61.1 bits (149), Expect = 3e-13
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 87 SQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTT 146
S H S L S + D+ ++ E R DKDGNG+IS+AELRH++T
Sbjct: 1 SGSHHHHHHGSSGENL---YFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTN 57
Query: 147 LGNFMS 152
LG ++
Sbjct: 58 LGEKLT 63
Score = 41.9 bits (99), Expect = 6e-06
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 43 SIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEV 100
S +E EAF++ D G+ I +++ +V+ LG+ T+ +V + ++ D ++++E
Sbjct: 27 SEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 86
Query: 101 FL 102
F+
Sbjct: 87 FV 88
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 60.3 bits (147), Expect = 5e-13
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
I E+ AF +FD G I ++G V+R LGQNPT+ ++ ++ D I FE F
Sbjct: 19 IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEF 78
Query: 102 LPI 104
L +
Sbjct: 79 LVM 81
Score = 41.4 bits (98), Expect = 7e-06
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 113 SADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
S + +F FD DG G IS+ EL ++ LG +
Sbjct: 15 SEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPT 54
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 63.4 bits (154), Expect = 5e-13
Identities = 16/117 (13%), Positives = 32/117 (27%), Gaps = 15/117 (12%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVL-RALGQNPTECDVKKYSQQHKSDER------- 95
+E F+ FD K+ ++ + L + V+ +++ R
Sbjct: 47 KQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLE 106
Query: 96 ----ISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
F FL + + D GN + E + + L
Sbjct: 107 NKGSEDFVEFL---EFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLE 160
Score = 33.7 bits (77), Expect = 0.015
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 104 IYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFM 151
I QAI + ++A+ IE + FDK+ G + E+ +
Sbjct: 34 IRQAIPREKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLD 81
Score = 30.6 bits (69), Expect = 0.16
Identities = 12/91 (13%), Positives = 21/91 (23%), Gaps = 21/91 (23%)
Query: 39 KVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPT----------ECDVKKYSQ 88
+ E F D G+ + + + L E D
Sbjct: 124 CYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNG--- 180
Query: 89 QHKSDERISFEVFLPIYQAISKGRSADTADD 119
++F+ F A + D D
Sbjct: 181 ----TGSVTFDEFA----AWASAVKLDADGD 203
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 60.3 bits (147), Expect = 7e-13
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 73 ALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGN 132
A + DV + ++ + +++ F G +A +ADD + D+D +
Sbjct: 2 AFSGILADADVAAALKACEAADSFNYKAFF-----AKVGLTAKSADDIKKAFFVIDQDKS 56
Query: 133 GFISSAELRHLLTTLGN 149
GFI EL+ L
Sbjct: 57 GFIEEDELKLFLQVFSA 73
Score = 26.4 bits (59), Expect = 2.1
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLR---ALGQNPTECDVKKYSQQHKSDE--R 95
S D+ +AF + D I ++ L+ A + T+ + K + + SD
Sbjct: 38 AKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGA 97
Query: 96 ISFEVFL 102
I + +
Sbjct: 98 IGVDEWA 104
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 60.0 bits (146), Expect = 1e-12
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 73 ALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGN 132
++ + D+KK + + + F + G +ADD + DKD +
Sbjct: 1 SMTDLLSAEDIKKAIGAFTAADSFDHKKFFQM-----VGLKKKSADDVKKVFHILDKDKS 55
Query: 133 GFISSAELRHLLTTLGNFMSWVNLVEKEV 161
GFI EL +L + +L KE
Sbjct: 56 GFIEEDELGSILKGFSSDAR--DLSAKET 82
Score = 31.1 bits (71), Expect = 0.059
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 37 VNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNP---TECDVKKYSQQHKSD 93
V S D+ + F + D I ++G++L+ + + + K D
Sbjct: 33 VGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKD 92
Query: 94 E--RISFEVFL 102
+I E F
Sbjct: 93 GDGKIGVEEFS 103
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 60.5 bits (147), Expect = 3e-12
Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 16/119 (13%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFL- 102
+ F+ D + + + AL NP + + +R+ F F+
Sbjct: 28 LLRLHHRFRALDRNKKGYLSRMDLQQ-IGALAVNPLGDRIIESFFP-DGSQRVDFPGFVR 85
Query: 103 ---------PIYQAISKGRSADTADDFIEGLRH----FDKDGNGFISSAELRHLLTTLG 148
+ + + L + +D D +G IS E+ +L +
Sbjct: 86 VLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMV 144
Score = 32.4 bits (74), Expect = 0.037
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 35 EPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRAL-GQNPTECDVKKYSQQ---- 89
+ + + ++ AFQL+D D KI ++ VLR + G TE ++ + +
Sbjct: 104 KKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQE 163
Query: 90 --HKSDERISFEVFL 102
D +SF F
Sbjct: 164 ADEDGDGAVSFVEFT 178
Score = 27.8 bits (62), Expect = 1.3
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 121 IEGLRH----FDKDGNGFISSAELRHLLTTLGN 149
+ L H D++ G++S +L+ + N
Sbjct: 28 LLRLHHRFRALDRNKKGYLSRMDLQQIGALAVN 60
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 59.7 bits (145), Expect = 6e-12
Identities = 14/120 (11%), Positives = 29/120 (24%), Gaps = 15/120 (12%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECD-------------VKKYSQQH 90
+ + F D D I ++ + +
Sbjct: 5 VQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAV 64
Query: 91 KSDERISFEVFLPIYQAISKG-RSADTADDFIEGL-RHFDKDGNGFISSAELRHLLTTLG 148
+ I F+ + + K + + + R D + + IS E LG
Sbjct: 65 AGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLG 124
Score = 34.3 bits (79), Expect = 0.009
Identities = 5/40 (12%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 118 DDFIEGLRH----FDKDGNGFISSAELRHLLTTLGNFMSW 153
D +++ ++ D D +G I+ + +
Sbjct: 2 DLWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEM 41
Score = 29.7 bits (67), Expect = 0.26
Identities = 14/95 (14%), Positives = 20/95 (21%), Gaps = 39/95 (41%)
Query: 49 EAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQAI 108
F+ D DN I + G LG + T F
Sbjct: 98 LFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAP----------------ASF------- 134
Query: 109 SKGRSADTADDFIEGLRHFDKDGNGFISSAELRHL 143
D + +G +S E
Sbjct: 135 ----------------DAIDTNNDGLLSLEEFVIA 153
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 59.8 bits (145), Expect = 9e-12
Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 11/107 (10%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
+ F D + ++++ G + + + +D ISF F
Sbjct: 50 YTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEF 109
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
+ +Y+ + + F + +G + E+ L LG
Sbjct: 110 MAMYKFMELAYNL-----F----VMNARARSGTLEPHEILPALQQLG 147
Score = 35.5 bits (82), Expect = 0.003
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 75 GQNPTECDVKKYSQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGF 134
P + + ++ + + P+ I D + D+D +G
Sbjct: 12 NLQPIQGSWMGAACIYQMPPSVRNTWWFPLLNTIP----LDQYTRIYQWFMGVDRDRSGT 67
Query: 135 ISSAELRHLLTTLG 148
+ EL G
Sbjct: 68 LEINELMMGQFPGG 81
Score = 32.8 bits (75), Expect = 0.027
Identities = 5/65 (7%), Positives = 17/65 (26%), Gaps = 1/65 (1%)
Query: 39 KVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQ-HKSDERIS 97
+ ++ F + + +I L+ LG + + +
Sbjct: 111 AMYKFMELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHRLFARGMAFCD 170
Query: 98 FEVFL 102
++
Sbjct: 171 LNCWI 175
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 57.3 bits (139), Expect = 1e-11
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 73 ALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGN 132
+L + D+ + ++ + S + F I G S ++ E R D D +
Sbjct: 1 SLTDILSPSDIAAALRDCQAPDSFSPKKFFQI-----SGMSKKSSSQLKEIFRILDNDQS 55
Query: 133 GFISSAELRHLLTTLG 148
GFI EL++ L
Sbjct: 56 GFIEEDELKYFLQRFE 71
Score = 28.8 bits (65), Expect = 0.32
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 34/104 (32%)
Query: 43 SIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFL 102
S + E F++ DN I ++ L+ +
Sbjct: 39 SSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVL----------TASET------ 82
Query: 103 PIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTT 146
F+ D DG+G I + E + ++ +
Sbjct: 83 ---------------KTFL---AAADHDGDGKIGAEEFQEMVQS 108
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 56.4 bits (137), Expect = 2e-11
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 73 ALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGN 132
A D+KK K++ + + F + G A +A+D + + D D +
Sbjct: 2 AAKDLLKADDIKKALDAVKAEGSFNHKKFFALV-----GLKAMSANDVKKVFKAIDADAS 56
Query: 133 GFISSAELRHLLTTLGNFMSWVNLVEKEV 161
GFI EL+ +L + +L + E
Sbjct: 57 GFIEEEELKFVLKSFA--ADGRDLTDAET 83
Score = 31.4 bits (72), Expect = 0.040
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRAL---GQNPTECDVK 84
S ++ + F+ D I ++ VL++ G++ T+ + K
Sbjct: 38 AMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETK 84
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 54.8 bits (133), Expect = 4e-11
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
E EAF LFD I ++ +RALG + + ++ + ++ + I F+ F
Sbjct: 6 KQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDF 65
Query: 102 L 102
L
Sbjct: 66 L 66
Score = 35.9 bits (84), Expect = 5e-04
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 127 FDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEV 161
FD + G I EL+ + LG ++ + E+
Sbjct: 16 FDTNKTGSIDYHELKVAMRALG-----FDVKKPEI 45
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 55.4 bits (134), Expect = 6e-11
Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 73 ALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGN 132
++ + D+ Q+ + + + F + G S +A + R D D +
Sbjct: 1 SITDILSAEDIAAALQECQDPDTFEPQKFF-----QTSGLSKMSASQVKDIFRFIDNDQS 55
Query: 133 GFISSAELRHLLTTLG 148
G++ EL++ L
Sbjct: 56 GYLDGDELKYFLQKFQ 71
Score = 29.6 bits (67), Expect = 0.18
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 43 SIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNP---TECDVKKYSQQHKSDE--RIS 97
S + + F+ DN + ++ L+ + TE + K +D +I
Sbjct: 39 SASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIG 98
Query: 98 FEVFL 102
+ F
Sbjct: 99 ADEFQ 103
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 54.5 bits (132), Expect = 9e-11
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 113 SADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
D ++ E + FDKD NG+IS++ELRH++ LG ++
Sbjct: 4 DTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLT 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 17/82 (20%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 43 SIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEV 100
+ +E EAF++FD + I S++ +V+ LG+ T+ +V++ ++ D ++++E
Sbjct: 7 AEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEE 66
Query: 101 FLPIYQAISKGRSADTADDFIE 122
F+ + + G +
Sbjct: 67 FVKMMMTVRGGGGGNGWSRLRR 88
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 54.7 bits (132), Expect = 9e-11
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
++ + E + FD G+ I + + +L LG T ++KK + S S+ F
Sbjct: 31 LEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDF 90
Query: 102 L 102
L
Sbjct: 91 L 91
Score = 44.7 bits (106), Expect = 6e-07
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 87 SQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTT 146
+QQ + + I+ + FL + S + F E FD +GNG I L+ +L
Sbjct: 2 AQQEERLDEINKQ-FLDDPKYSSDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEK 60
Query: 147 LG 148
LG
Sbjct: 61 LG 62
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 54.9 bits (133), Expect = 1e-10
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 79 TECDVKKYSQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSA 138
D+ K K ++ F + G T E DKD +GFI
Sbjct: 7 KADDINKAISAFKDPGTFDYKRFFHLV-----GLKGKTDAQVKEVFEILDKDQSGFIEEE 61
Query: 139 ELRHLLTTLGNFMSWVNLVEKEV 161
EL+ +L +L + E
Sbjct: 62 ELKGVLKGFS--AHGRDLNDTET 82
Score = 28.3 bits (64), Expect = 0.59
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRAL---GQNPTECDVK 84
+ + E F++ D I ++ VL+ G++ + + K
Sbjct: 37 GKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETK 83
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 55.9 bits (135), Expect = 1e-10
Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 15/124 (12%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQ---------NPTECDVKKYSQQ--HKS 92
+ + Q D GD I + + + T + + + Q
Sbjct: 13 LRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAP 72
Query: 93 DERISFEVFLPIYQAISKGRSADTADDFIEGL----RHFDKDGNGFISSAELRHLLTTLG 148
RIS E + + D D +G++S E + L +G
Sbjct: 73 GVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVG 132
Query: 149 NFMS 152
++
Sbjct: 133 PDLT 136
Score = 38.2 bits (89), Expect = 3e-04
Identities = 13/103 (12%), Positives = 31/103 (30%), Gaps = 2/103 (1%)
Query: 23 QFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECD 82
+ + + ++ + L + D D + + + L+A+G + T+
Sbjct: 80 EAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDK 139
Query: 83 VKKYSQQ--HKSDERISFEVFLPIYQAISKGRSADTADDFIEG 123
+ +IS + FL G + G
Sbjct: 140 AITCFNTLDFNKNGQISRDEFLVTVNDFLFGLEETALANAFYG 182
Score = 33.6 bits (77), Expect = 0.014
Identities = 8/46 (17%), Positives = 16/46 (34%)
Query: 108 ISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSW 153
I++ A ++ D G+GFIS + + +
Sbjct: 4 ITESERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKL 49
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 54.1 bits (131), Expect = 2e-10
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 77 NPTECDVKKYSQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFIS 136
+ DV + + + F G ++ + DD + D+D +GFI
Sbjct: 5 GLKDADVAAALAACSAADSFKHKEFF-----AKVGLASKSLDDVKKAFYVIDQDKSGFIE 59
Query: 137 SAELRHLLTTLGNFMSWVNLVEKEV 161
EL+ L S L + E
Sbjct: 60 EDELKLFLQNFS--PSARALTDAET 82
Score = 28.7 bits (65), Expect = 0.41
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 34/94 (36%)
Query: 43 SIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFL 102
S+D+ +AF + D I ++ L+ + +D
Sbjct: 39 SLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARAL----------TDAET------ 82
Query: 103 PIYQAISKGRSADTADDFIEGLRHFDKDGNGFIS 136
F+ DKDG+G I
Sbjct: 83 ---------------KAFL---ADGDKDGDGMIG 98
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 53.8 bits (130), Expect = 3e-10
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 73 ALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGN 132
A+ + D++ ++ + +++ F + G S+ T D + D+D +
Sbjct: 2 AITDILSAKDIESALSSCQAADSFNYKSFF-----STVGLSSKTPDQIKKVFGILDQDKS 56
Query: 133 GFISSAELRHLLTTLGNFMSWVNLVEKEV 161
GFI EL+ L S L E
Sbjct: 57 GFIEEEELQLFLKNFS--SSARVLTSAET 83
Score = 28.0 bits (63), Expect = 0.65
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 43 SIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHK-----SDERIS 97
+ D+ + F + D I ++ L+ + + D +I
Sbjct: 40 TPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIG 99
Query: 98 FEVFLPIYQA 107
E F + +A
Sbjct: 100 VEEFQSLVKA 109
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 51.7 bits (125), Expect = 6e-10
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 113 SADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
+ +D R FD+DG+G I+ ELR + LG +
Sbjct: 1 ARAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLP 40
Score = 42.5 bits (101), Expect = 2e-06
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 43 SIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVK 84
+++ AF+ FD GD I V ++ + LGQ + ++
Sbjct: 4 GLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELD 45
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 52.9 bits (127), Expect = 1e-09
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
+ + E + FD + +I + + ++ LG T ++KK + IS+ F
Sbjct: 49 LTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDF 108
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNG 133
+ + + RS ++ + F+ N
Sbjct: 109 VNM---MLGKRS-----AVLKLVMMFEGKANE 132
Score = 42.9 bits (101), Expect = 6e-06
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 88 QQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTL 147
+Q + I+ FL + + + F E FD + G I L+ ++ L
Sbjct: 21 RQERRLAEIN-REFLCDQKYSDEENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKL 79
Query: 148 G 148
G
Sbjct: 80 G 80
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 48.0 bits (115), Expect = 2e-08
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 125 RHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEVI 162
+ D +G+G++++ EL+ + TL + + KE
Sbjct: 14 KKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEAS 51
Score = 35.7 bits (83), Expect = 7e-04
Identities = 15/92 (16%), Positives = 24/92 (26%), Gaps = 31/92 (33%)
Query: 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLPI 104
E AF+ D GD + ++ + L + K E
Sbjct: 7 AELEAAFKKLDANGDGYVTALELQTFMVTLDAYKAL-------SKDKVKEAS-------- 51
Query: 105 YQAISKGRSADTADDFIEGLRHFDKDGNGFIS 136
I + DK+ +G IS
Sbjct: 52 -------------AKLI---KMADKNSDGKIS 67
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 47.5 bits (114), Expect = 3e-08
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 113 SADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
D ++ + + FD +G+G I E + ++ +G
Sbjct: 3 RQDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVG 38
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 43 SIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNP 78
+E L AF++FD GD I + +++ +G+ P
Sbjct: 6 DEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEP 41
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 49.4 bits (118), Expect = 5e-08
Identities = 16/118 (13%), Positives = 34/118 (28%), Gaps = 17/118 (14%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDV-KKYSQQHKSDERISFEVFL 102
I F D + + + L NP + + + +++++F F+
Sbjct: 28 ITRLYSRFTSLDKGENGTLSREDFQRI-PELAINPLGDRIINAFFS--EGEDQVNFRGFM 84
Query: 103 -------------PIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTL 147
++ R +D D + IS EL +L +
Sbjct: 85 RTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 142
Score = 27.8 bits (62), Expect = 1.3
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 32/100 (32%)
Query: 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLPI 104
++ AF+L+D D+KI ++ VLR + + SDE++
Sbjct: 113 NKLHFAFRLYDLDKDDKISRDELLQVLRMM------------VGVNISDEQL-------- 152
Query: 105 YQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLL 144
AD I+ D+DG+ IS E +L
Sbjct: 153 ---------GSIADRTIQ---EADQDGDSAISFTEFVKVL 180
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 48.1 bits (115), Expect = 5e-08
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 95 RISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
+E LP+ K + + +G I++ LR LG
Sbjct: 19 ETKYEDMLPV--MAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILG 70
Score = 35.4 bits (82), Expect = 0.002
Identities = 15/104 (14%), Positives = 27/104 (25%), Gaps = 17/104 (16%)
Query: 39 KVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNP----------TECDVKKYSQ 88
V + E + F L + + I + LG E D+
Sbjct: 34 DVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDG--- 90
Query: 89 QHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGN 132
D ++ F + +S D + L + N
Sbjct: 91 ----DGALNQTEFCVLMVRLSPEMMEDAETWLEKALTQELCNHN 130
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 48.1 bits (115), Expect = 8e-08
Identities = 12/98 (12%), Positives = 34/98 (34%), Gaps = 9/98 (9%)
Query: 39 KVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISF 98
++ +++ + E F D G + ++ + +G + + +++ + RI F
Sbjct: 64 ELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFF 123
Query: 99 EVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFIS 136
+ ++ + F R D G +
Sbjct: 124 DDYVACCVKLRALTDF-----F----RKRDHLQQGSAN 152
Score = 46.6 bits (111), Expect = 4e-07
Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 34/119 (28%)
Query: 51 FQLFDNR--GDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE-------------- 94
+ F D ++ ++ L G N T S E
Sbjct: 3 YTYFSAVAGQDGEVDAEELQRCLTQSGINGTY--------SPFSLETCRIMIAMLDRDHT 54
Query: 95 -RISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
++ F F ++ A++ + F D+DG+G + ELR + +G +S
Sbjct: 55 GKMGFNAFKELWAALNAWKEN-----F----MTVDQDGSGTVEHHELRQAIGLMGYRLS 104
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 48.2 bits (115), Expect = 1e-07
Identities = 12/98 (12%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 39 KVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISF 98
++ ++ + + F FD + ++ L +G + V ++++ ++ +I+F
Sbjct: 97 ELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITF 156
Query: 99 EVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFIS 136
+ ++ + + F R D G ++
Sbjct: 157 DDYIACCVKLRALTDS-----F----RRRDTAQQGVVN 185
Score = 32.0 bits (73), Expect = 0.051
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 115 DTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSW 153
D + G +G I + EL+ LT G +
Sbjct: 29 GQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGY 67
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 46.0 bits (110), Expect = 1e-07
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKK 85
I E F++ D I ++ + L+ +G E ++K
Sbjct: 22 IGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKD 63
Score = 38.3 bits (90), Expect = 8e-05
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 106 QAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEV 161
+ +++ S + E + D D +G I+ EL+ L +G+ L+E E+
Sbjct: 11 KHMAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGS-----ELMESEI 61
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 45.6 bits (109), Expect = 1e-07
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 117 ADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
ADD + FD +G+G IS +EL L TLG
Sbjct: 2 ADDMERIFKRFDTNGDGKISLSELTDALRTLG 33
Score = 42.6 bits (101), Expect = 2e-06
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTE 80
D+ F+ FD GD KI +S++ + LR LG +
Sbjct: 3 DDMERIFKRFDTNGDGKISLSELTDALRTLGSTSAD 38
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 47.5 bits (113), Expect = 3e-07
Identities = 15/117 (12%), Positives = 35/117 (29%), Gaps = 14/117 (11%)
Query: 43 SIDEYLEAFQLF-DNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQ------HKSDER 95
+ E ++ F + + + + + +Y + D
Sbjct: 20 DAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEAT----QYVEAMFRAFDTNGDNT 75
Query: 96 ISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
I F ++ A++ + +DKD NG I EL ++ ++
Sbjct: 76 IDFLEYV---AALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKK 129
Score = 28.6 bits (64), Expect = 0.85
Identities = 13/98 (13%), Positives = 36/98 (36%), Gaps = 21/98 (21%)
Query: 43 SIDEYL-EAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVF 101
+++ L F+++D + I ++ +++ ++ + C V+ ++Q
Sbjct: 92 TLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPE---- 147
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAE 139
+ D D++G+G +S E
Sbjct: 148 -------------EVVDRIF---LLVDENGDGQLSLNE 169
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 45.3 bits (108), Expect = 3e-07
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 108 ISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGN 149
++ + D + FD +G+G ISS+EL L TLG+
Sbjct: 1 MAAEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGS 42
Score = 44.6 bits (106), Expect = 4e-07
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
I + F+ FD GD KI S++G+ L+ LG + T +V++ + +D ISF+ F
Sbjct: 10 IADRERIFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDGDGFISFDEF 68
Query: 102 LPIYQAISKGRSADTADDF 120
+A ++G D + F
Sbjct: 69 TDFARA-NRGLVKDVSKIF 86
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 46.8 bits (111), Expect = 4e-07
Identities = 16/129 (12%), Positives = 36/129 (27%), Gaps = 24/129 (18%)
Query: 44 IDEYLEAF-QLFDNRGDNKIHVSQIGNVLRAL----GQNPTECDVKKYSQQHKS------ 92
++ L F +D D I ++ + + K
Sbjct: 11 RNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLR 70
Query: 93 -------DERISFEVFLPIYQAISKG-----RSADTADDFIEGL-RHFDKDGNGFISSAE 139
DE+++ E +L ++ K + ++ + D G+ I E
Sbjct: 71 KYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHE 130
Query: 140 LRHLLTTLG 148
+ + G
Sbjct: 131 YSTVYMSYG 139
Score = 34.8 bits (80), Expect = 0.006
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 125 RHFDKDGNGFISSAELRHLLTTLGNFMSW 153
+D + +G I + + + N SW
Sbjct: 20 TFYDCNHDGVIEWDDFELAIKKICNLHSW 48
Score = 32.5 bits (74), Expect = 0.031
Identities = 16/117 (13%), Positives = 28/117 (23%), Gaps = 40/117 (34%)
Query: 30 KMYGYEPVNKVMTSIDEYLEA-FQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQ 88
+ E + + +Y+ F + D GDN I + V + G ++CD
Sbjct: 93 CVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDCD------ 146
Query: 89 QHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLT 145
F G ++ L T
Sbjct: 147 ----------AAF-----------------------DTLSDGGKTMVTREIFARLWT 170
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 45.8 bits (109), Expect = 5e-07
Identities = 12/98 (12%), Positives = 37/98 (37%), Gaps = 9/98 (9%)
Query: 39 KVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISF 98
++ ++ + + F FD+ + ++ L +G V ++++ + +I+F
Sbjct: 66 ELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGKITF 125
Query: 99 EVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFIS 136
+ ++ + + F R D G ++
Sbjct: 126 DDYIACCVKLRALTDS-----F----RRRDSAQQGMVN 154
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 44.4 bits (105), Expect = 7e-07
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 118 DDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
+ +FD IS E R + ++
Sbjct: 24 HAITQEFENFDTMKTNTISREEFRAICNRRVQILT 58
Score = 33.2 bits (76), Expect = 0.009
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 38 NKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--R 95
V + + F+ FD N I + + Q T+ + + + R
Sbjct: 17 KAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGR 76
Query: 96 ISFEVFL 102
+ + FL
Sbjct: 77 LKYPDFL 83
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 42.5 bits (101), Expect = 2e-06
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 125 RHFDKDGNGFISSAELRHLLTTLGNFMS 152
FDK+ +G +S E R + + +
Sbjct: 8 EKFDKNKDGKLSLDEFREVALAFSPYFT 35
Score = 42.5 bits (101), Expect = 2e-06
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 46 EYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKK 85
F+ FD D K+ + + V A T+ D+ K
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVK 41
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 44.1 bits (104), Expect = 2e-06
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVF 101
++ + + FD G+ I + + +L LG T ++K+ ++ S S+ F
Sbjct: 47 LEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDF 106
Query: 102 LPIYQAISKG 111
L +
Sbjct: 107 LRMMLGKRSA 116
Score = 43.4 bits (102), Expect = 3e-06
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 87 SQQHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTT 146
+QQ + E I+ + FL + + + F FD +GNG I L+ +L
Sbjct: 18 AQQEERLEGINKQ-FLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEK 76
Query: 147 LGNFMS 152
LG +
Sbjct: 77 LGVPKT 82
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 44.3 bits (105), Expect = 2e-06
Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 20/115 (17%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQ----------HKSD 93
+ ++ F D ++ +++ N+L + + + +
Sbjct: 3 VRQFRRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTT 61
Query: 94 ERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLG 148
++ FE F ++ I K ++ + FD D +G I S+EL G
Sbjct: 62 GKLGFEEFKYLWNNIKKWQAI---------YKQFDVDRSGTIGSSELPGAFEAAG 107
Score = 37.8 bits (88), Expect = 5e-04
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 16/101 (15%)
Query: 40 VMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQ--NPTECD--VKKYSQQHKSDER 95
+ +I ++ ++ FD I S++ A G N +++YS
Sbjct: 72 LWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYS---DEGGN 128
Query: 96 ISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFIS 136
+ F+ F+ + A F + DKDG G I
Sbjct: 129 MDFDNFISCLVRLDAMFRA-----F----KSLDKDGTGQIQ 160
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 44.1 bits (104), Expect = 4e-06
Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 9/125 (7%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNV-------LRALGQNPTECDVKKYSQQHKSDERI 96
I F + + S V L L NP + + + + + +
Sbjct: 50 ILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDSL 109
Query: 97 SFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNL 156
SFE FL + S +A R FD D +G ++ +L L+ L L
Sbjct: 110 SFEDFLDLLSVFSD--TATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRL 167
Query: 157 VEKEV 161
E+
Sbjct: 168 SASEM 172
Score = 31.4 bits (71), Expect = 0.10
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 28/111 (25%)
Query: 42 TSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVF 101
T + AF++FD D ++ + ++ L + S +
Sbjct: 126 TPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCL--------TGEGEDTRLSASEM----- 172
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
D+ +E D D +G I+ +E +H+++ +F S
Sbjct: 173 ------------KQLIDNILE---ESDIDRDGTINLSEFQHVISRSPDFAS 208
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 44.0 bits (104), Expect = 4e-06
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 16/126 (12%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQ------HKSDERIS 97
+ F + G + + +L G N K+ Q D +
Sbjct: 21 THVWYRTFMMEYPSG--LQTLHEFKTLLGLQGLNQ---KANKHIDQVYNTFDTNKDGFVD 75
Query: 98 FEVFLPIYQAISKGRSADTADDFIEGL-RHFDKDGNGFISSAELRHLLTTLGNFMSWVNL 156
F F+ I + + ++ + +D DGNG I EL + + L
Sbjct: 76 FLEFIAAVNLIMQE----KMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTL 131
Query: 157 VEKEVI 162
+E I
Sbjct: 132 SPEEFI 137
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 41.6 bits (98), Expect = 6e-06
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 110 KGRSADTADDFIEGLR----HFDKDGNGFISSAELRHLLTTLG 148
+ AD + + LR D + +G + E R L T L
Sbjct: 15 YFQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELR 57
Score = 35.0 bits (81), Expect = 0.002
Identities = 11/96 (11%), Positives = 21/96 (21%), Gaps = 39/96 (40%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLP 103
+ F D ++ + + L P + + VF
Sbjct: 26 LARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAE----------------AVF-- 67
Query: 104 IYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAE 139
+ D D +G I+ E
Sbjct: 68 ---------------------QRLDADRDGAITFQE 82
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 42.8 bits (101), Expect = 1e-05
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 9/125 (7%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNV-------LRALGQNPTECDVKKYSQQHKSDERI 96
I F + + S V L L NP + + + + + +
Sbjct: 19 ILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDSL 78
Query: 97 SFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNL 156
SFE FL + S + D + R FD D +G ++ +L L+ L L
Sbjct: 79 SFEDFLDLLSVFSDTATPDIKSHYA--FRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRL 136
Query: 157 VEKEV 161
E+
Sbjct: 137 SASEM 141
Score = 31.3 bits (71), Expect = 0.095
Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 29/112 (25%)
Query: 42 TSIDEYLE-AFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEV 100
+ D AF++FD D ++ + ++ L + S +
Sbjct: 94 ATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCL--------TGEGEDTRLSASEM---- 141
Query: 101 FLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
D+ +E D D +G I+ +E +H+++ +F S
Sbjct: 142 -------------KQLIDNILE---ESDIDRDGTINLSEFQHVISRSPDFAS 177
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 41.4 bits (97), Expect = 3e-05
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 93 DERISFEVFLPIYQAISK-----GRSADTADDFIEGL-RHFDKDGNGFISSAELRHLLTT 146
D+ +S+E +L +++ + I L + D G+G + E ++
Sbjct: 74 DDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKN 133
Query: 147 LG 148
Sbjct: 134 FQ 135
Score = 33.0 bits (75), Expect = 0.021
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 125 RHFDKDGNGFISSAELRHLLTTLGNFMSW 153
D + +G I + ++T
Sbjct: 16 FFLDMNHDGSIQDNDFEDMMTRYKEVNKG 44
Score = 31.4 bits (71), Expect = 0.091
Identities = 7/95 (7%), Positives = 14/95 (14%), Gaps = 39/95 (41%)
Query: 49 EAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQAI 108
F+ D GD + + + N + +
Sbjct: 109 FLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVP-------------------------- 142
Query: 109 SKGRSADTADDFIEGLRHFDKDGNGFISSAELRHL 143
G + L
Sbjct: 143 -------------AVYNVITDGGKVTFDLNRYKEL 164
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 40.5 bits (95), Expect = 7e-05
Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 15/115 (13%)
Query: 43 SIDEYLEAFQLFDNR-GDNKIHVSQIGNVLRALGQNPTECDVKKYSQQ------HKSDER 95
S E + ++ F ++ + + +P+ KY +Q D
Sbjct: 12 SATECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSA---NKYVEQMFETFDFNKDGY 68
Query: 96 ISFEVFLPIYQAISKGRSADTADDFIEGL-RHFDKDGNGFISSAELRHLLTTLGN 149
I F ++ + KG D + + +D DGNG I EL +++ +
Sbjct: 69 IDFMEYVAALSLVLKG----KVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRA 119
Score = 26.3 bits (58), Expect = 4.2
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 43 SIDEYLE-AFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQ---------HKS 92
+D+ L F+L+D G+ I ++ N+++A+ + +
Sbjct: 85 KVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDING 144
Query: 93 DERISFEVFL 102
D +S E F+
Sbjct: 145 DGELSLEEFM 154
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 38.4 bits (90), Expect = 8e-05
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 20/83 (24%)
Query: 41 MTSIDEYLEAFQLFDNRGDN--KIHVSQIGNVLRALGQNPT-----------ECDVKKYS 87
M S +E AF++F + + +I ++ V++ LG + E D
Sbjct: 1 MKSPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNG-- 58
Query: 88 QQHKSDERISFEVFLPIYQAISK 110
D +SFE FL + + IS+
Sbjct: 59 -----DGEVSFEEFLVMMKKISQ 76
Score = 36.0 bits (84), Expect = 4e-04
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 115 DTADDFIEGLRHFD-KDGN-GFISSAELRHLLTTLG 148
+ ++ F K+G+ IS EL+ ++ TLG
Sbjct: 2 KSPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLG 37
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 40.1 bits (94), Expect = 1e-04
Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 15/129 (11%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQ----------HKSD 93
E + F+ D GD ++ ++ + L + +
Sbjct: 345 TKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRN 404
Query: 94 ERISFEVFLPIYQAISKGRSADTADDFIEGL-RHFDKDGNGFISSAELRHLLTTLGNFMS 152
I + F+ ++ R + + D +E + FD+DGNG IS EL +
Sbjct: 405 GYIDYSEFV----TVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGLDHLESK 460
Query: 153 WVNLVEKEV 161
+ +
Sbjct: 461 TWKEMISGI 469
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 39.3 bits (92), Expect = 2e-04
Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 15/129 (11%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQ----------HKSD 93
E + F+ D GD ++ ++ L E K ++ +
Sbjct: 354 RKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKN 413
Query: 94 ERISFEVFLPIYQAISKGRSADTADDFIEGL-RHFDKDGNGFISSAELRHLLTTLGNFMS 152
I + F+ ++ + +++ + FD D +G I+ EL +L
Sbjct: 414 GYIEYSEFI----SVCMDKQILFSEERLRRAFNLFDTDKSGKITKEELANLFGLTSISEK 469
Query: 153 WVNLVEKEV 161
N V E
Sbjct: 470 TWNDVLGEA 478
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 39.5 bits (91), Expect = 2e-04
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 5/104 (4%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQ--HKSDERISFEVF 101
++E+ +F FD + + L ++G N E + + ++F+ F
Sbjct: 724 MNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAF 783
Query: 102 LPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLT 145
I + DTAD + + +I+ ELR L
Sbjct: 784 --IDFMSRETADTDTADQVMASFKILA-GDKNYITVDELRRELP 824
Score = 27.6 bits (60), Expect = 2.3
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 104 IYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
I +KG S + ++F HFD+ G + + R L ++G M
Sbjct: 711 ILTRDAKGISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMG 759
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 39.3 bits (92), Expect = 3e-04
Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 18/133 (13%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKS----------- 92
E F D GD ++ +++ + L + + + +
Sbjct: 334 TKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDF 393
Query: 93 --DERISFEVFLPIYQAISKGRSADTADDFIEGL-RHFDKDGNGFISSAELRHLLTTLGN 149
+ I + F+ ++ R + + +E R FD D +G ISS EL +
Sbjct: 394 DKNGYIEYSEFV----TVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDV 449
Query: 150 FMSWVNLVEKEVI 162
V EV
Sbjct: 450 DSETWKSVLSEVD 462
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 37.1 bits (86), Expect = 0.001
Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 17/146 (11%)
Query: 11 KSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNV 70
CP+ + ++ F ++ + + + + F +FD + IH + V
Sbjct: 35 LRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHL------FTVFDKDNNGFIHFEEFITV 88
Query: 71 LRALGQNPTECDVKKYSQQH--KSDERISFEVFLPIYQAISK--------GRSADTADDF 120
L + E + + + D I+F+ L I ++ K T +
Sbjct: 89 LSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMR 148
Query: 121 IEG-LRHFDKDGNGFISSAELRHLLT 145
++ + DK+ +G+I+ E R
Sbjct: 149 VKKIFKLMDKNEDGYITLDEFREGSK 174
Score = 36.0 bits (83), Expect = 0.002
Identities = 14/114 (12%), Positives = 38/114 (33%), Gaps = 7/114 (6%)
Query: 43 SIDEYLEAFQLFDNR-GDNKIHVSQIGNVLRALGQNPTECDVKKY---SQQHKSDERISF 98
E + + F ++ + + + D + ++ I F
Sbjct: 23 DRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHF 82
Query: 99 EVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
E F+ + S+G + +D + +G+I+ E+ ++ ++ M
Sbjct: 83 EEFITVLSTTSRGTLEEKLSWAF---ELYDLNHDGYITFDEMLTIVASVYKMMG 133
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/99 (12%), Positives = 22/99 (22%), Gaps = 37/99 (37%)
Query: 49 EAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQAI 108
F+ D GD + ++ + E ++
Sbjct: 4 ALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLI---------------------- 41
Query: 109 SKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTL 147
+ D DGNG I E ++
Sbjct: 42 ---------------FKSIDADGNGEIDQNEFAKFYGSI 65
Score = 33.3 bits (77), Expect = 0.004
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 125 RHFDKDGNGFISSAELRHLLTTLGNFMS 152
+ D +G+G +S E++ ++ +
Sbjct: 7 KEIDVNGDGAVSYEEVKAFVSKKRAIKN 34
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 37.0 bits (86), Expect = 0.001
Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 19/125 (15%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--------- 94
+ E F+ D D + ++ + + + E
Sbjct: 330 TKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPL 389
Query: 95 -------RISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTL 147
I + F+ + + + + FDKDG+G IS+ EL L +
Sbjct: 390 LDMDGSGSIEYSEFI---ASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQA 446
Query: 148 GNFMS 152
+ +
Sbjct: 447 DSSIQ 451
Score = 32.0 bits (73), Expect = 0.068
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 49 EAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQH--KSDERISFEVF 101
AF++FD G KI ++ + + +++ +Q D + F F
Sbjct: 421 RAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEF 475
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 35.9 bits (83), Expect = 0.002
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 93 DERISFEVFLPIYQAISKGRSADTADDFIEGL-RHFDKDGNGFISSAELRHLLTTLGN 149
+ I F F+ +++ + + ++ + +D GFI EL+ ++ L +
Sbjct: 88 NGVIEFGEFV---RSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLH 142
Score = 30.5 bits (69), Expect = 0.16
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 42 TSIDEYLE-AFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQH---------- 90
+ E ++ AF+L+D R I ++ ++ AL + +
Sbjct: 107 APVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADR 166
Query: 91 KSDERISFEVF 101
K+D +I + +
Sbjct: 167 KNDGKIDIDEW 177
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 35.7 bits (83), Expect = 0.004
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 125 RHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEKEVIWVN 165
H D + I+ + L G + E V W
Sbjct: 389 IHLMGDESACIAYIRITQYLDAGGIPRTA-QSEETRV-WHR 427
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 34.8 bits (80), Expect = 0.005
Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 17/145 (11%)
Query: 11 KSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNV 70
CP+ +K +F ++ + + + + + F +FD + I +
Sbjct: 35 FKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYV------FNVFDADKNGYIDFKEFICA 88
Query: 71 LRALGQNPTECDVKKYSQQH--KSDERISFEVFLPIYQAISK--------GRSADTADDF 120
L + + Q + ++ IS++ L I AI K DT +
Sbjct: 89 LSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKR 148
Query: 121 IEGL-RHFDKDGNGFISSAELRHLL 144
+ + DK+ +G ++ E
Sbjct: 149 VNKIFNMMDKNKDGQLTLEEFCEGS 173
Score = 31.3 bits (71), Expect = 0.076
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 7/109 (6%)
Query: 43 SIDEYLEAFQLFDNR-GDNKIHVSQIGNVLRALGQNPTECDVKKYSQQ---HKSDERISF 98
E + ++ F ++ S+ + + +Y + I F
Sbjct: 23 DKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDF 82
Query: 99 EVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTL 147
+ F+ S+G D + +D D NG IS E+ ++ +
Sbjct: 83 KEFICALSVTSRGELNDKLIWA---FQLYDLDNNGLISYDEMLRIVDAI 128
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 35.0 bits (80), Expect = 0.007
Identities = 24/160 (15%), Positives = 53/160 (33%), Gaps = 17/160 (10%)
Query: 11 KSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNV 70
K+ CP+ ++ F Q+ + + + + + F FD +
Sbjct: 61 KNECPSGVVNEETFKQIYAQFFPHGDASTYAHYL------FNAFDTTQTGSVKFEDFVTA 114
Query: 71 LRALGQNPTECDVKKYSQQHKSDE--RISFEVFLPIYQAISK--------GRSADTADDF 120
L L + ++ + ++ I+ E + I +AI DT
Sbjct: 115 LSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQH 174
Query: 121 IEG-LRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEK 159
++ + DK+ +G ++ E N M + L +
Sbjct: 175 VDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQLFQN 214
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 34.4 bits (79), Expect = 0.007
Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 7/114 (6%)
Query: 43 SIDEYLEAFQLF-DNRGDNKIHVSQIGNVLRALGQNPTECDVKKY---SQQHKSDERISF 98
+ E E ++ F + + + + + ++ + D I F
Sbjct: 23 TEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDF 82
Query: 99 EVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
F+ S+G+ +D DGNG+IS AE+ ++ + +S
Sbjct: 83 REFIIALSVTSRGKLEQKLKWA---FSMYDLDGNGYISKAEMLEIVQAIYKMVS 133
Score = 30.6 bits (69), Expect = 0.19
Identities = 31/145 (21%), Positives = 50/145 (34%), Gaps = 17/145 (11%)
Query: 11 KSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNV 70
CP+ S +F ++ + Y +K + F+ FD GD I +
Sbjct: 35 LRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHV------FRTFDANGDGTIDFREFIIA 88
Query: 71 LRALGQNPTECDVKKYSQQH--KSDERISFEVFLPIYQAISKGRSA--------DTADDF 120
L + E +K + + IS L I QAI K S+ T +
Sbjct: 89 LSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKR 148
Query: 121 IEGL-RHFDKDGNGFISSAELRHLL 144
E + R D + +G +S E
Sbjct: 149 TEKIFRQMDTNRDGKLSLEEFIRGA 173
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 34.8 bits (80), Expect = 0.007
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 91 KSDERISFEVFLPIYQAISKGRSADTADDFIEGL-RHFDKDGNGFISSAELRHLLTTL 147
K + + FE F +A+S DD I + +D GFI E++ ++
Sbjct: 97 KHNGILGFEEFA---RALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVAT 151
Score = 27.5 bits (61), Expect = 1.9
Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 32/105 (30%)
Query: 42 TSIDEYLE-AFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEV 100
ID+ + +FQL+D + I ++ ++ A
Sbjct: 118 APIDDKIHFSFQLYDLKQQGFIERQEVKQMVVA--------------------------- 150
Query: 101 FLPIYQAISKGRSADTADDFIEG-LRHFDKDGNGFISSAELRHLL 144
+D I+ D +G I E R L+
Sbjct: 151 ---TLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLV 192
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.011
Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 61/146 (41%)
Query: 11 KSWCPTLKNSKLQFSQVLFKMYGYE-----PVNKV------------------MTSI--- 44
SW + S + VLF + G P + M SI
Sbjct: 287 DSW-ESFFVSVRKAITVLFFI-GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 45 -DEYLEAFQLFDNR---GDNKIHVSQIGN-----V-------LRALGQN------PTECD 82
E ++ + N ++ +S + N V L L P+ D
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLV-NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 83 VKKYSQQHK---SDERISFEV-FLPI 104
Q + S+ ++ F FLP+
Sbjct: 404 ------QSRIPFSERKLKFSNRFLPV 423
Score = 30.0 bits (67), Expect = 0.38
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 31/82 (37%)
Query: 62 IHVSQIGN---VLRALGQNPTECDVKKYSQ---QHKSDERISFEVFLPIYQAISKGRSAD 115
I V Q+ + + LG P E ++ Y + H L AI+ D
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGE--LRSYLKGATGHSQG--------LVTAVAIA---ETD 287
Query: 116 TADDFIE------------GLR 125
+ + F G+R
Sbjct: 288 SWESFFVSVRKAITVLFFIGVR 309
Score = 30.0 bits (67), Expect = 0.40
Identities = 30/177 (16%), Positives = 49/177 (27%), Gaps = 65/177 (36%)
Query: 35 EPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRA---------LGQNPTECDV-- 83
EP T+ E + F + + V Q VL L N D+
Sbjct: 53 EP-----TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN----DIHA 103
Query: 84 --KKYSQQHKSDERISFEVFLPIYQA-------ISKG------RSAD------------- 115
K Q++ + + E+ A K R+
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 116 -TADDFIEGLRHFDKDGNGFI------SSAELRHLLT---------TLG-NFMSWVN 155
DD+ E LR + + + S+ L L+ T G N + W+
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 33.2 bits (76), Expect = 0.020
Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 91 KSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNF 150
+ FE F+ + +G + +D + +G+I+ E+ ++ + +
Sbjct: 68 TQTGSVKFEDFVTALSILLRGTVHEKLRWTF---NLYDINKDGYINKEEMMDIVKAIYDM 124
Query: 151 MS 152
M
Sbjct: 125 MG 126
Score = 32.9 bits (75), Expect = 0.023
Identities = 21/148 (14%), Positives = 47/148 (31%), Gaps = 17/148 (11%)
Query: 20 SKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPT 79
++ F Q+ + + + + + F FD + L L +
Sbjct: 37 NEETFKQIYAQFFPHGDASTYAHYL------FNAFDTTQTGSVKFEDFVTALSILLRGTV 90
Query: 80 ECDVKKYSQQHKSDE--RISFEVFLPIYQAI--------SKGRSADTADDFIEGL-RHFD 128
++ + ++ I+ E + I +AI DT ++ + D
Sbjct: 91 HEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMD 150
Query: 129 KDGNGFISSAELRHLLTTLGNFMSWVNL 156
K+ +G ++ E N M + L
Sbjct: 151 KNKDGIVTLDEFLESXQEDDNIMRSLQL 178
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.050
Identities = 21/147 (14%), Positives = 47/147 (31%), Gaps = 43/147 (29%)
Query: 9 MLKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVM-TSID--------EYLEAFQLFDNRGD 59
++ T N +K + + ++ +S++ + + +F
Sbjct: 336 SIRDGLATWDN---------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP--S 384
Query: 60 NKIHVSQIGNVLRALGQNPTECDV-------KKYS--QQHKSDERISFEVFLP-IYQAIS 109
I +L + + + DV KYS ++ + IS +P IY +
Sbjct: 385 AHIPTI----LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS----IPSIYLELK 436
Query: 110 KGRSADTA--DDFIE---GLRHFDKDG 131
+ A ++ + FD D
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDD 463
Score = 28.7 bits (63), Expect = 0.94
Identities = 20/169 (11%), Positives = 41/169 (24%), Gaps = 53/169 (31%)
Query: 14 CPTL---KNSKLQFSQVLFKMYGYEPVNKVMTSI--DEYLEAFQLFDN----------RG 58
C L + ++ + + ++ ++ DE + +
Sbjct: 266 CKILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 59 DNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQAISKGRSADTAD 118
N +S I +R D K+ K I +
Sbjct: 325 TNPRRLSIIAESIR---DGLATWDNWKHVNCDKLTTII---------------------E 360
Query: 119 DFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSWVNLVEK--EVIWVN 165
+ L AE R + L F ++ +IW +
Sbjct: 361 SSLNVL-----------EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 31.9 bits (72), Expect = 0.062
Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 91 KSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNF 150
+ I FE F+ + +G + +D + +G I+ E+ ++ ++ +
Sbjct: 141 DGNGAIHFEDFVVGLSILLRGTVHEKLKWAF---NLYDINKDGCITKEEMLAIMKSIYDM 197
Query: 151 MS 152
M
Sbjct: 198 MG 199
Score = 30.0 bits (67), Expect = 0.31
Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 17/166 (10%)
Query: 2 EEQRTEIMLKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNK 61
E Q K+ CPT + F + + + + F FD G+
Sbjct: 92 ELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFL------FNAFDADGNGA 145
Query: 62 IHVSQIGNVLRALGQNPTECDVKKYSQQHKSDE--RISFEVFLPIYQAISK--------G 111
IH L L + +K + ++ I+ E L I ++I
Sbjct: 146 IHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPI 205
Query: 112 RSADTADDFIEG-LRHFDKDGNGFISSAELRHLLTTLGNFMSWVNL 156
D + +E + D++ +G ++ E N M+ + L
Sbjct: 206 LREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSMQL 251
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 31.8 bits (72), Expect = 0.065
Identities = 22/147 (14%), Positives = 45/147 (30%), Gaps = 17/147 (11%)
Query: 9 MLKSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIG 68
K+ CP+ ++ F ++ + + + F FD + +
Sbjct: 72 GFKNECPSGVVNEETFKEIYSQFFPQGDSTTYAHFL------FNAFDTDHNGAVSFEDFI 125
Query: 69 NVLRALGQNPTECDVKKYSQQH--KSDERISFEVFLPIYQAISK--------GRSADTAD 118
L L + + + + D I+ E L I +AI D
Sbjct: 126 KGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPR 185
Query: 119 DFIEGL-RHFDKDGNGFISSAELRHLL 144
+E + DK+ +G ++ E
Sbjct: 186 QHVETFFQKMDKNKDGVVTIDEFIESC 212
Score = 30.6 bits (69), Expect = 0.15
Identities = 12/112 (10%), Positives = 35/112 (31%), Gaps = 8/112 (7%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQ---HKSDERISFEV 100
+ F+ G ++ + + + +SFE
Sbjct: 66 LQILYRGFKNECPSG--VVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFED 123
Query: 101 FLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
F+ + +G + + +D + +G+I+ E+ ++ + + M
Sbjct: 124 FIKGLSILLRGTVQEKLNWA---FNLYDINKDGYITKEEMLDIMKAIYDMMG 172
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 31.7 bits (72), Expect = 0.065
Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 17/145 (11%)
Query: 11 KSWCPTLKNSKLQFSQVLFKMYGYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNV 70
CP+ + F ++ + + + K T + F +FD D +I S+
Sbjct: 35 IKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFV------FNVFDENKDGRIEFSEFIQA 88
Query: 71 LRALGQNPTECDVKKYSQQHKSDE--RISFEVFLPIYQAISK--------GRSADTADDF 120
L + + ++ + + D I+ L I AI + +T +
Sbjct: 89 LSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKR 148
Query: 121 IEG-LRHFDKDGNGFISSAELRHLL 144
++ DK+ +G ++ E +
Sbjct: 149 VDRIFAMMDKNADGKLTLQEFQEGS 173
Score = 31.4 bits (71), Expect = 0.091
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 90 HKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGN 149
D RI F F+ S+G + + +D D +G+I+ E+ ++ +
Sbjct: 74 ENKDGRIEFSEFIQALSVTSRGTLDEKLRWA---FKLYDLDNDGYITRNEMLDIVDAIYQ 130
Query: 150 FMS 152
+
Sbjct: 131 MVG 133
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 30.5 bits (68), Expect = 0.27
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 125 RHFDKDGNGFISSAELRHLLTTLG 148
+ F+ D +G I S EL G
Sbjct: 811 KRFETDRSGTIGSNELPGAFEAAG 834
Score = 30.1 bits (67), Expect = 0.40
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 125 RHFDKDGNGFISSAELRHLLTTLG 148
R FD D +G +S+ E+R + G
Sbjct: 614 RKFDLDKSGSMSAYEMRMAIEAAG 637
Score = 26.3 bits (57), Expect = 5.8
Identities = 17/108 (15%), Positives = 39/108 (36%), Gaps = 16/108 (14%)
Query: 33 GYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNP----TECDVKKYSQ 88
G+E + +I ++ ++ F+ I +++ A G + +++YS
Sbjct: 792 GFEEFKYLWNNIKKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYS- 850
Query: 89 QHKSDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFIS 136
+ F+ F+ + + + R DK+G G I
Sbjct: 851 --DETGNMDFDNFI---SCLVRLDAM------FRAFRSLDKNGTGQIQ 887
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 29.6 bits (66), Expect = 0.28
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 125 RHFDKDGNGFISSAELRHLLT 145
+ D DGN + EL +T
Sbjct: 75 KMHDYDGNNLLDGLELSTAIT 95
Score = 26.9 bits (59), Expect = 2.1
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 25/101 (24%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEV 100
M+ + L F++ D G+N + ++ + + + S+ DE I
Sbjct: 64 MSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSE----DELI---- 115
Query: 101 FLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELR 141
+ D + DK+ +G+I AE
Sbjct: 116 --------------NIIDGVLRDD---DKNNDGYIDYAEFA 139
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 30.2 bits (67), Expect = 0.35
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 125 RHFDKDGNGFISSAELRHLLTTLG 148
R D D +G ++S E+R L G
Sbjct: 612 REIDVDRSGTMNSYEMRKALEEAG 635
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 29.6 bits (66), Expect = 0.41
Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 23/93 (24%)
Query: 50 AFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQAIS 109
AF L+D G+ I +++ ++ A+ + T DVK + E+ + +++
Sbjct: 112 AFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIW-------- 163
Query: 110 KGRSADTADDFIEGLRHFDKDGNGFISSAELRH 142
++F K+ + ++ E
Sbjct: 164 ---------------KYFGKNDDDKLTEKEFIE 181
Score = 29.2 bits (65), Expect = 0.54
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 13/117 (11%)
Query: 43 SIDEYLEAFQLFDNR-GDNKIHVSQIGNVLRALGQNPTECDVKKYSQQ------HKSDER 95
S +E +Q F +I Q ++ + D K Y+Q D
Sbjct: 31 SEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDT---DPKAYAQHVFRSFDSNLDGT 87
Query: 96 ISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMS 152
+ F+ ++ A+ + T +D DGNG IS E+ ++ + ++
Sbjct: 88 LDFKEYV---IALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMIT 141
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 28.1 bits (63), Expect = 0.59
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 125 RHFDKDGNGFISSAELRHLLTTLG 148
DKD +GF+S E+R + G
Sbjct: 17 LKTDKDMDGFVSGLEVREIFLKTG 40
>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM
superfamily, biosynthetic protein; HET: MP5; 2.10A
{Caulobacter crescentus} PDB: 3epm_A* 3epn_A*
Length = 612
Score = 29.0 bits (65), Expect = 0.78
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 103 PIYQAISK--GRSAD-TADDFIEGLRHFDKDGNGFI 135
PIYQA+ K G + D + F + L + G +
Sbjct: 275 PIYQALEKVNGVAEDLNWEVFRDTLIEQCEQGVDYF 310
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, PSI-BIO; 2.30A
{Alicyclobacillus acidocaldarius subsp}
Length = 373
Score = 28.5 bits (64), Expect = 1.1
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 28 LFKMYGYEPVNKVMTSIDEYLEAFQ 52
+ GYEP V + + EY++
Sbjct: 50 FVEDAGYEP---VTSGLFEYVDTLL 71
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 28.5 bits (64), Expect = 1.1
Identities = 6/38 (15%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 30 KMYGYEPVNKVMT---SIDEYLEAFQLFDNRGDNKIHV 64
K + ++T SI++ E ++ + +I +
Sbjct: 324 KTLYPKAAKMLITKTVSINDEKELLKVLREKEHGEIKI 361
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 28.0 bits (63), Expect = 1.5
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 15/44 (34%)
Query: 28 LFKMYGYEPVNKVMTSIDEYLEA------------FQLFDNRGD 59
++GY+ + T EY E F+L D +G+
Sbjct: 37 EINLWGYDM---IETPTLEYYETVGVVSAILDQQLFKLLDQQGN 77
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium
channel, alternative splicing, disease epilepsy,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kbi_A
Length = 129
Score = 27.1 bits (60), Expect = 1.9
Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 10/74 (13%)
Query: 90 HKSDERISFEVFLPIYQAI----------SKGRSADTADDFIEGLRHFDKDGNGFISSAE 139
H S V + A ++ S D + F E FD D FI A+
Sbjct: 5 HHHHHHSSGLVPRGSHMASENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFIEFAK 64
Query: 140 LRHLLTTLGNFMSW 153
L L +
Sbjct: 65 LSDFADALDPPLLI 78
Score = 26.3 bits (58), Expect = 3.0
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRAL 74
+ + E ++ FD I +++ + AL
Sbjct: 42 FEMFYEVWEKFDPDATQFIEFAKLSDFADAL 72
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 26.7 bits (59), Expect = 2.0
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 125 RHFDKDGNGFISSAELRHLLTTLG 148
DK +G ++ + R +L
Sbjct: 21 NSHDKTMSGHLTGPQARTILMQSS 44
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Length = 86
Score = 26.3 bits (57), Expect = 2.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 45 DEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTE 80
DE ++ F +FD +N VS ++L LGQ T+
Sbjct: 14 DECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTK 49
>3ktw_A SRP19, signal recognition particle 19 kDa protein;
ribonucleoprotein complex, RNA-RNA tertiary
interactions, AS loop, 7S RNA; 3.20A {Sulfolobus
solfataricus}
Length = 109
Score = 26.9 bits (59), Expect = 2.0
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 57 RGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLP-------IYQAIS 109
R KI ++ + LR LG +P + KKY + K + I+ + I+ A+
Sbjct: 39 RIPYKIKTEELVSTLRELGLDPIVIENKKYPRDRKINFLIAVKKVKSKNYTLKIIHNALM 98
Query: 110 KGRSADTA 117
R +
Sbjct: 99 GTRQTNPN 106
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 26.6 bits (59), Expect = 2.2
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 125 RHFDKDGNGFISSAELRHLLTTLG 148
R D + FIS + ++ T
Sbjct: 29 RSLQPDPSSFISGSVAKNFFTKSK 52
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 27.6 bits (62), Expect = 2.2
Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 104 IYQAISKGRSADTAD----DFIEGL-RHFDKDGNGFISSAELRHLLTTL 147
+ ++ + D D ++ L + G S+ E+ + ++
Sbjct: 205 VADIMNGRIANPPTDKSDRDMLDVLIAVKAETGTPRFSADEITGMFISM 253
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 26.2 bits (58), Expect = 2.4
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 125 RHFDKDGNGFISSAELRHLLTTLG 148
+ D NGFI + + T
Sbjct: 16 KTIQPDLNGFIPGSAAKEFFTKSK 39
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand,
voltage-gated sodium channel regulation, CTD binds to
FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens}
PDB: 2kbi_A
Length = 168
Score = 26.5 bits (58), Expect = 3.6
Identities = 13/55 (23%), Positives = 19/55 (34%)
Query: 99 EVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLTTLGNFMSW 153
E F + ++ S D D F E FD + FI + L L +
Sbjct: 1 ENFSVATEESTEPLSEDDFDMFYEIWEKFDPEATQFIEYSVLSDFADALSEPLRI 55
Score = 25.8 bits (56), Expect = 6.1
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 44 IDEYLEAFQLFDNRGDNKIHVSQIGNVLRAL 74
D + E ++ FD I S + + AL
Sbjct: 19 FDMFYEIWEKFDPEATQFIEYSVLSDFADAL 49
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 26.6 bits (58), Expect = 3.9
Identities = 6/54 (11%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 92 SDERISFEVFLPIYQAISKGRSADTADDFIEGLRHFDKDGNGFISSAELRHLLT 145
+ ++ + Y+ ++ + F DK+ +G +++ E++ ++
Sbjct: 75 VKQVLTKDELKDFYEQLTDQGFDNRLRTF---FDMVDKNADGRLTAEEVKEIIA 125
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural
genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP:
d.15.3.2 PDB: 1sf0_A
Length = 77
Score = 25.4 bits (55), Expect = 4.1
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 65 SQIGNVLRALGQNPTECDVKKYSQQHKSDERISFEVFLPIYQAISKG 111
++ ++LRA+G N K + D+ + F+ + +S G
Sbjct: 31 MKVRDILRAVGFNTESAIAKVNGKVVLEDDEVKDGDFVEVIPVVSGG 77
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 26.8 bits (60), Expect = 4.2
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 41 MTSIDEYLEAFQLFDNRGDNKIHV 64
D +AF L ++ + I
Sbjct: 324 FRGFDNIEKAFMLMKDKPKDLIKP 347
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 25.2 bits (55), Expect = 6.1
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 125 RHFDKDGNGFISSAELRHLLTTLG 148
R + G + + + L G
Sbjct: 18 RQVEAGNTGRVLALDAAAFLKKSG 41
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 26.0 bits (58), Expect = 6.7
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 33 GYEPVNKVMT----SIDEYLEAFQLFDNRGDNKIHV 64
G ++ ++T D+Y EAF+L K+
Sbjct: 310 GKLNLDPIITHKYKGFDKYEEAFELMRAGKTGKVVF 345
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 25.7 bits (56), Expect = 7.3
Identities = 15/113 (13%), Positives = 26/113 (23%), Gaps = 25/113 (22%)
Query: 33 GYEPVNKVMTSIDEYLEAFQLFDNRGDNKIHVSQIGNVLRALGQNPTECDVKKYSQQHKS 92
E ++ + Y FQ + S + +
Sbjct: 64 DQEEFARLWKRLVHYQHVFQKVQTSPG-VLLSSDLWKAIENTD--------------FLR 108
Query: 93 DERISFEVFLPIYQAISKGRSADTADDFIEGL----------RHFDKDGNGFI 135
IS E+ + S + + L R+ KDG G
Sbjct: 109 GIFISRELLHLVTLRYSDSVGRVSFPSLVCFLMRLEAMAKTFRNLSKDGKGLY 161
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 25.6 bits (57), Expect = 9.1
Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 33 GYEPVNKVMT---SIDEYLEAFQLFDNRGDNKIHV 64
G ++++++ S+DE + G+ K+ V
Sbjct: 326 GAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLV 360
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.398
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,454,926
Number of extensions: 133761
Number of successful extensions: 911
Number of sequences better than 10.0: 1
Number of HSP's gapped: 699
Number of HSP's successfully gapped: 297
Length of query: 165
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 79
Effective length of database: 4,300,587
Effective search space: 339746373
Effective search space used: 339746373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)