Query psy13767
Match_columns 801
No_of_seqs 482 out of 2703
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 19:58:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0517|consensus 100.0 8.7E-48 1.9E-52 435.1 66.3 575 1-652 1290-1928(2473)
2 KOG0517|consensus 100.0 9.3E-48 2E-52 434.9 66.2 552 3-622 759-1377(2473)
3 KOG0040|consensus 100.0 4.5E-39 9.8E-44 357.6 54.8 570 7-653 70-702 (2399)
4 KOG0040|consensus 100.0 9E-35 2E-39 323.6 50.7 458 55-622 12-469 (2399)
5 smart00243 GAS2 Growth-Arrest- 100.0 2E-35 4.3E-40 218.6 2.7 73 727-799 1-73 (73)
6 PF02187 GAS2: Growth-Arrest-S 100.0 7.4E-33 1.6E-37 209.1 -1.3 72 727-798 1-72 (73)
7 cd00176 SPEC Spectrin repeats, 99.8 1.2E-17 2.6E-22 167.4 28.0 211 90-347 2-212 (213)
8 cd00176 SPEC Spectrin repeats, 99.8 1.8E-16 3.8E-21 158.9 28.5 211 242-494 2-212 (213)
9 KOG4286|consensus 99.6 1.5E-12 3.3E-17 139.6 37.1 312 91-496 4-336 (966)
10 KOG4286|consensus 99.6 1.6E-13 3.4E-18 147.1 28.8 299 17-349 36-336 (966)
11 PF00435 Spectrin: Spectrin re 99.2 3.3E-10 7.1E-15 99.1 13.5 103 242-346 3-105 (105)
12 smart00150 SPEC Spectrin repea 99.2 2.4E-10 5.3E-15 99.2 12.5 100 244-345 2-101 (101)
13 cd05022 S-100A13 S-100A13: S-1 99.1 2.3E-10 5E-15 94.6 6.8 67 647-714 5-74 (89)
14 COG5126 FRQ1 Ca2+-binding prot 99.1 4.9E-10 1.1E-14 102.0 8.9 82 631-714 71-155 (160)
15 smart00150 SPEC Spectrin repea 99.1 1.6E-09 3.5E-14 94.0 11.4 99 92-192 2-100 (101)
16 PF00435 Spectrin: Spectrin re 99.0 2.5E-09 5.5E-14 93.4 12.2 101 90-192 3-103 (105)
17 cd05027 S-100B S-100B: S-100B 99.0 9E-10 2E-14 91.4 7.8 67 647-714 5-78 (88)
18 PF13499 EF-hand_7: EF-hand do 99.0 5.1E-10 1.1E-14 88.5 6.0 62 651-713 1-66 (66)
19 KOG0027|consensus 99.0 2.8E-09 6.1E-14 99.7 10.5 72 647-719 5-76 (151)
20 KOG0027|consensus 99.0 1.4E-09 3.1E-14 101.6 8.2 84 631-715 60-149 (151)
21 KOG0028|consensus 98.9 7.1E-09 1.5E-13 91.6 10.8 93 622-715 74-170 (172)
22 COG5126 FRQ1 Ca2+-binding prot 98.9 2.9E-09 6.2E-14 97.0 7.5 129 647-794 17-158 (160)
23 KOG0028|consensus 98.9 1.7E-09 3.7E-14 95.5 4.2 74 647-721 30-103 (172)
24 cd05026 S-100Z S-100Z: S-100Z 98.9 6.5E-09 1.4E-13 87.7 7.5 67 647-714 7-80 (93)
25 cd05031 S-100A10_like S-100A10 98.8 1.2E-08 2.6E-13 86.7 7.3 66 648-714 6-78 (94)
26 cd05025 S-100A1 S-100A1: S-100 98.8 1.6E-08 3.5E-13 85.5 7.8 67 647-714 6-79 (92)
27 cd05029 S-100A6 S-100A6: S-100 98.8 1.8E-08 3.8E-13 83.7 7.7 67 647-714 7-78 (88)
28 cd00052 EH Eps15 homology doma 98.7 3.8E-08 8.2E-13 78.0 6.3 59 653-714 2-60 (67)
29 smart00027 EH Eps15 homology d 98.7 5.7E-08 1.2E-12 82.9 7.5 65 647-714 7-71 (96)
30 cd00213 S-100 S-100: S-100 dom 98.6 8.2E-08 1.8E-12 80.6 7.1 67 647-714 5-78 (88)
31 PF14658 EF-hand_9: EF-hand do 98.6 7.6E-08 1.6E-12 72.8 5.5 59 655-714 3-63 (66)
32 cd05023 S-100A11 S-100A11: S-1 98.6 1.8E-07 3.9E-12 77.8 7.6 66 647-713 6-78 (89)
33 PF13833 EF-hand_8: EF-hand do 98.6 1.4E-07 3.1E-12 70.9 5.8 50 663-713 1-51 (54)
34 PTZ00184 calmodulin; Provision 98.5 2.9E-07 6.4E-12 86.1 7.4 69 647-716 8-76 (149)
35 KOG0030|consensus 98.5 4.7E-07 1E-11 78.2 7.7 81 630-713 64-149 (152)
36 cd00051 EFh EF-hand, calcium b 98.4 5.3E-07 1.2E-11 69.9 6.8 61 652-713 2-62 (63)
37 cd00252 SPARC_EC SPARC_EC; ext 98.4 4.9E-07 1.1E-11 78.8 7.1 62 647-713 45-106 (116)
38 PTZ00183 centrin; Provisional 98.4 4.7E-07 1E-11 85.7 7.6 68 647-715 14-81 (158)
39 PTZ00183 centrin; Provisional 98.4 1.1E-06 2.4E-11 83.2 9.3 66 649-715 89-154 (158)
40 PTZ00184 calmodulin; Provision 98.4 1.4E-06 2.9E-11 81.6 9.0 83 631-714 63-147 (149)
41 KOG0037|consensus 98.3 2.8E-06 6.1E-11 80.0 9.3 65 648-713 122-186 (221)
42 cd05030 calgranulins Calgranul 98.3 2E-06 4.3E-11 71.7 6.8 67 647-714 5-78 (88)
43 KOG0031|consensus 98.2 7.7E-06 1.7E-10 72.1 8.8 82 632-714 81-164 (171)
44 KOG0031|consensus 98.1 1.1E-05 2.4E-10 71.2 8.2 65 647-716 29-93 (171)
45 KOG0034|consensus 98.1 1E-05 2.2E-10 76.9 8.6 84 632-716 84-176 (187)
46 KOG0044|consensus 98.0 1.9E-05 4.1E-10 75.0 8.5 71 647-718 97-178 (193)
47 KOG0036|consensus 98.0 2.3E-05 5.1E-10 80.4 9.5 73 641-714 73-145 (463)
48 KOG0044|consensus 98.0 3.2E-05 6.8E-10 73.6 9.6 67 647-714 61-127 (193)
49 PF12128 DUF3584: Protein of u 98.0 0.12 2.5E-06 65.1 66.8 35 465-499 827-861 (1201)
50 KOG0030|consensus 98.0 1.2E-05 2.6E-10 69.7 5.3 73 647-719 8-81 (152)
51 PF00036 EF-hand_1: EF hand; 97.9 6.8E-06 1.5E-10 52.0 2.4 25 688-713 2-26 (29)
52 KOG0377|consensus 97.9 2.4E-05 5.1E-10 80.5 7.5 67 647-714 544-614 (631)
53 KOG0041|consensus 97.9 3.8E-05 8.3E-10 70.7 6.9 73 641-714 90-162 (244)
54 PF00036 EF-hand_1: EF hand; 97.9 1.6E-05 3.6E-10 50.3 3.2 26 651-676 1-26 (29)
55 PF13405 EF-hand_6: EF-hand do 97.7 2.4E-05 5.2E-10 50.8 2.5 30 651-680 1-31 (31)
56 cd05024 S-100A10 S-100A10: A s 97.7 0.00022 4.8E-09 58.5 8.0 64 648-713 6-74 (91)
57 PLN02964 phosphatidylserine de 97.6 0.00011 2.4E-09 82.9 7.5 64 651-715 180-243 (644)
58 PLN02964 phosphatidylserine de 97.6 0.00012 2.5E-09 82.7 7.2 65 645-714 138-206 (644)
59 PRK04863 mukB cell division pr 97.6 0.52 1.1E-05 59.6 56.9 71 704-781 696-766 (1486)
60 KOG0038|consensus 97.5 0.00072 1.6E-08 59.0 8.5 83 631-714 87-176 (189)
61 PRK12309 transaldolase/EF-hand 97.4 0.00039 8.5E-09 74.4 8.3 53 648-714 332-384 (391)
62 KOG0994|consensus 97.4 0.52 1.1E-05 55.3 48.6 82 67-151 1167-1254(1758)
63 KOG4065|consensus 97.3 0.00047 1E-08 57.5 5.4 59 654-713 71-143 (144)
64 PF13202 EF-hand_5: EF hand; P 97.3 0.00018 3.9E-09 43.8 1.9 23 653-675 2-24 (25)
65 KOG0036|consensus 97.2 0.00068 1.5E-08 70.0 6.5 67 647-714 11-78 (463)
66 KOG0035|consensus 97.2 0.00032 6.9E-09 80.3 4.6 399 242-716 396-817 (890)
67 PF12763 EF-hand_4: Cytoskelet 97.0 0.0018 3.9E-08 55.3 6.1 64 647-714 7-70 (104)
68 KOG4240|consensus 96.9 0.64 1.4E-05 54.9 28.0 141 206-348 242-383 (1025)
69 KOG0994|consensus 96.8 1.8 3.9E-05 51.1 48.6 46 464-509 1657-1702(1758)
70 PF13202 EF-hand_5: EF hand; P 96.6 0.0022 4.8E-08 39.0 3.0 25 688-713 1-25 (25)
71 KOG0034|consensus 96.6 0.0032 6.9E-08 60.0 5.2 99 653-761 69-169 (187)
72 PF06160 EzrA: Septation ring 96.5 2.2 4.8E-05 48.9 46.8 121 209-337 133-268 (560)
73 KOG4223|consensus 96.4 0.005 1.1E-07 62.1 5.4 63 652-715 165-228 (325)
74 KOG0037|consensus 96.4 0.0092 2E-07 56.8 6.9 60 652-712 59-119 (221)
75 KOG4240|consensus 96.3 1 2.2E-05 53.3 23.6 157 55-260 243-400 (1025)
76 PRK04778 septation ring format 96.2 3.4 7.4E-05 47.6 45.5 48 93-140 163-212 (569)
77 PF10591 SPARC_Ca_bdg: Secrete 96.2 0.012 2.5E-07 51.5 6.0 62 647-711 51-112 (113)
78 PF13405 EF-hand_6: EF-hand do 96.2 0.0056 1.2E-07 39.6 3.0 27 687-714 1-27 (31)
79 KOG0046|consensus 96.1 0.012 2.6E-07 62.7 6.7 66 647-714 16-84 (627)
80 PF12128 DUF3584: Protein of u 96.0 7.2 0.00016 49.5 62.6 76 466-549 712-788 (1201)
81 PF06008 Laminin_I: Laminin Do 96.0 2.3 5E-05 43.7 28.4 240 6-309 10-251 (264)
82 PF06160 EzrA: Septation ring 95.8 4.8 0.00011 46.2 49.2 42 415-456 462-503 (560)
83 KOG4223|consensus 95.8 0.016 3.4E-07 58.6 5.7 67 647-714 74-140 (325)
84 PRK04863 mukB cell division pr 95.8 9.1 0.0002 48.9 52.7 215 117-339 892-1127(1486)
85 PRK04778 septation ring format 95.7 5.6 0.00012 45.9 51.9 125 210-337 138-272 (569)
86 KOG0377|consensus 95.5 0.056 1.2E-06 56.4 8.2 70 644-714 458-574 (631)
87 PF14788 EF-hand_10: EF hand; 95.3 0.043 9.4E-07 39.4 5.0 46 667-713 2-47 (51)
88 PF13514 AAA_27: AAA domain 95.2 12 0.00027 47.1 56.5 142 4-152 337-482 (1111)
89 KOG4251|consensus 95.2 0.01 2.2E-07 56.8 1.9 60 650-710 101-163 (362)
90 PRK03918 chromosome segregatio 94.6 16 0.00034 45.0 55.9 21 243-263 455-475 (880)
91 TIGR00606 rad50 rad50. This fa 94.5 21 0.00045 46.0 65.9 36 416-451 707-742 (1311)
92 KOG0516|consensus 94.5 0.15 3.3E-06 63.2 10.2 75 724-798 338-413 (1047)
93 smart00054 EFh EF-hand, calciu 94.4 0.033 7.3E-07 34.5 2.2 25 653-677 3-27 (29)
94 PRK02224 chromosome segregatio 94.2 19 0.00041 44.4 67.7 14 282-295 420-433 (880)
95 TIGR02169 SMC_prok_A chromosom 94.1 23 0.0005 45.2 40.9 27 641-668 1020-1046(1164)
96 KOG2643|consensus 93.8 0.091 2E-06 55.2 5.1 80 633-714 217-313 (489)
97 KOG4251|consensus 93.7 0.24 5.2E-06 47.7 7.4 146 648-798 138-313 (362)
98 TIGR00606 rad50 rad50. This fa 93.7 29 0.00062 44.7 63.0 87 56-142 573-659 (1311)
99 smart00054 EFh EF-hand, calciu 93.6 0.064 1.4E-06 33.1 2.5 27 687-714 1-27 (29)
100 PF13833 EF-hand_8: EF-hand do 93.5 0.074 1.6E-06 39.5 3.0 31 648-678 23-53 (54)
101 PF08580 KAR9: Yeast cortical 93.0 23 0.0005 41.5 33.3 95 422-522 200-295 (683)
102 PRK02224 chromosome segregatio 92.8 31 0.00066 42.5 63.8 65 285-355 479-543 (880)
103 PF13499 EF-hand_7: EF-hand do 92.8 0.037 8E-07 43.2 0.4 28 688-716 2-29 (66)
104 PF14788 EF-hand_10: EF hand; 91.7 0.31 6.7E-06 35.2 3.9 44 634-678 4-49 (51)
105 KOG2643|consensus 91.0 0.19 4.1E-06 53.0 3.3 81 631-715 372-453 (489)
106 PF09279 EF-hand_like: Phospho 90.7 0.34 7.3E-06 39.8 4.0 66 651-717 1-71 (83)
107 TIGR02169 SMC_prok_A chromosom 90.4 62 0.0013 41.3 39.4 12 428-439 681-692 (1164)
108 KOG0161|consensus 90.3 72 0.0016 41.8 61.5 14 27-40 936-949 (1930)
109 KOG0161|consensus 89.7 80 0.0017 41.5 58.7 17 243-259 1044-1060(1930)
110 PF05042 Caleosin: Caleosin re 89.6 0.87 1.9E-05 42.2 6.0 68 655-723 12-132 (174)
111 smart00027 EH Eps15 homology d 88.7 0.43 9.4E-06 40.4 3.2 65 687-772 11-75 (96)
112 cd05022 S-100A13 S-100A13: S-1 88.6 0.5 1.1E-05 39.2 3.4 60 687-761 9-69 (89)
113 cd05026 S-100Z S-100Z: S-100Z 88.5 0.51 1.1E-05 39.7 3.5 67 687-768 11-80 (93)
114 PRK03918 chromosome segregatio 87.9 77 0.0017 39.0 63.2 25 284-308 408-432 (880)
115 COG4477 EzrA Negative regulato 87.8 49 0.0011 36.6 49.1 185 29-256 113-297 (570)
116 KOG3866|consensus 87.5 0.87 1.9E-05 45.6 4.9 60 654-714 248-323 (442)
117 cd05027 S-100B S-100B: S-100B 87.5 0.47 1E-05 39.4 2.6 62 687-761 9-73 (88)
118 cd00252 SPARC_EC SPARC_EC; ext 86.0 1.1 2.4E-05 39.2 4.3 31 647-677 77-107 (116)
119 cd00052 EH Eps15 homology doma 84.9 1.7 3.7E-05 33.5 4.6 46 632-678 16-61 (67)
120 cd05030 calgranulins Calgranul 84.7 2.4 5.3E-05 35.1 5.6 31 649-679 50-80 (88)
121 cd00213 S-100 S-100: S-100 dom 84.4 1.3 2.7E-05 36.8 3.8 29 686-715 8-38 (88)
122 KOG2243|consensus 84.0 1.6 3.5E-05 51.8 5.4 60 654-715 4061-4120(5019)
123 TIGR02168 SMC_prok_B chromosom 83.9 1.4E+02 0.003 38.2 43.9 18 469-486 966-983 (1179)
124 KOG2562|consensus 83.9 2 4.4E-05 46.0 5.7 58 653-714 281-342 (493)
125 PF08580 KAR9: Yeast cortical 83.7 99 0.0021 36.4 32.2 116 206-334 236-358 (683)
126 KOG3555|consensus 83.1 1.6 3.4E-05 44.6 4.4 64 648-716 248-311 (434)
127 cd05025 S-100A1 S-100A1: S-100 83.0 1.3 2.9E-05 37.0 3.4 63 686-761 9-74 (92)
128 PF13514 AAA_27: AAA domain 82.7 1.5E+02 0.0032 37.7 57.2 134 8-151 237-375 (1111)
129 cd05023 S-100A11 S-100A11: S-1 82.4 2.7 5.8E-05 34.9 4.9 30 649-678 51-80 (89)
130 PF11802 CENP-K: Centromere-as 82.1 60 0.0013 32.7 16.2 99 415-521 46-145 (268)
131 KOG1029|consensus 81.7 1.7 3.7E-05 49.1 4.4 65 647-714 192-256 (1118)
132 cd05031 S-100A10_like S-100A10 80.9 2.9 6.4E-05 35.1 4.7 50 631-680 26-81 (94)
133 KOG1955|consensus 80.7 3.6 7.7E-05 44.2 6.1 65 647-714 228-292 (737)
134 cd05029 S-100A6 S-100A6: S-100 80.7 1.8 3.8E-05 36.0 3.2 47 632-678 29-79 (88)
135 COG1196 Smc Chromosome segrega 77.2 2.2E+02 0.0048 36.3 43.9 36 77-113 155-190 (1163)
136 COG0497 RecN ATPase involved i 77.0 1.4E+02 0.003 33.9 30.8 28 464-491 345-372 (557)
137 PF00261 Tropomyosin: Tropomyo 76.9 86 0.0019 31.5 23.2 24 21-44 2-25 (237)
138 KOG0933|consensus 75.4 1.9E+02 0.0042 34.8 54.5 38 734-773 1126-1163(1174)
139 COG0419 SbcC ATPase involved i 74.1 2.3E+02 0.005 35.1 56.3 129 120-260 313-444 (908)
140 PF05517 p25-alpha: p25-alpha 74.0 11 0.00023 35.2 6.7 60 654-714 6-68 (154)
141 cd05024 S-100A10 S-100A10: A s 72.8 4.1 8.9E-05 33.8 3.2 31 648-678 46-76 (91)
142 KOG0751|consensus 72.5 4 8.6E-05 43.9 3.8 48 631-679 90-137 (694)
143 KOG0996|consensus 72.3 2.5E+02 0.0054 34.6 50.5 69 700-772 1199-1275(1293)
144 COG4477 EzrA Negative regulato 72.1 1.7E+02 0.0037 32.7 51.2 123 212-337 139-271 (570)
145 PF12325 TMF_TATA_bd: TATA ele 71.8 62 0.0014 28.5 10.5 79 270-348 12-102 (120)
146 cd00051 EFh EF-hand, calcium b 71.3 4.6 9.9E-05 29.9 3.1 27 688-715 2-28 (63)
147 KOG2562|consensus 71.0 5.1 0.00011 43.1 4.2 57 652-709 313-373 (493)
148 PF12718 Tropomyosin_1: Tropom 70.8 86 0.0019 28.7 13.7 95 211-308 13-107 (143)
149 KOG0169|consensus 69.7 7.4 0.00016 44.7 5.4 62 651-713 137-198 (746)
150 KOG4666|consensus 69.0 9.3 0.0002 39.0 5.3 64 650-714 259-323 (412)
151 PF09730 BicD: Microtubule-ass 68.1 2.5E+02 0.0055 33.1 21.4 178 54-255 266-462 (717)
152 PRK12309 transaldolase/EF-hand 67.8 8.4 0.00018 41.8 5.2 31 679-710 327-357 (391)
153 PF06008 Laminin_I: Laminin Do 67.3 1.5E+02 0.0033 30.3 32.0 68 237-306 84-153 (264)
154 KOG0995|consensus 67.0 2.2E+02 0.0048 32.0 32.9 132 15-155 222-365 (581)
155 TIGR02168 SMC_prok_B chromosom 66.8 3.6E+02 0.0078 34.4 45.3 21 466-486 998-1018(1179)
156 KOG4578|consensus 66.4 6.3 0.00014 40.1 3.6 67 651-718 334-401 (421)
157 COG5185 HEC1 Protein involved 65.8 2.1E+02 0.0045 31.3 37.1 219 35-263 272-510 (622)
158 PF14643 DUF4455: Domain of un 65.2 2.4E+02 0.0052 31.8 48.8 83 465-553 345-428 (473)
159 KOG4674|consensus 65.0 4.3E+02 0.0094 34.7 53.2 87 7-93 516-605 (1822)
160 KOG0978|consensus 64.8 2.8E+02 0.0061 32.4 40.3 86 473-560 376-468 (698)
161 KOG0038|consensus 64.2 5.6 0.00012 35.4 2.4 56 658-714 79-135 (189)
162 KOG0042|consensus 63.3 9.6 0.00021 42.1 4.5 67 647-714 590-656 (680)
163 PF08726 EFhand_Ca_insen: Ca2+ 60.6 2.6 5.7E-05 32.9 -0.2 58 650-713 6-67 (69)
164 PF12763 EF-hand_4: Cytoskelet 59.0 8.2 0.00018 33.1 2.5 30 649-678 42-71 (104)
165 KOG4666|consensus 58.4 11 0.00025 38.4 3.8 63 649-714 295-358 (412)
166 COG1196 Smc Chromosome segrega 58.2 5E+02 0.011 33.2 66.0 71 594-671 971-1041(1163)
167 PF10168 Nup88: Nuclear pore c 57.7 4E+02 0.0086 31.8 19.5 30 277-306 635-664 (717)
168 KOG0933|consensus 56.7 4.4E+02 0.0095 32.1 53.8 91 211-304 412-502 (1174)
169 PF09726 Macoilin: Transmembra 56.7 4E+02 0.0087 31.6 23.4 29 129-157 552-580 (697)
170 PF12325 TMF_TATA_bd: TATA ele 55.9 1.5E+02 0.0032 26.3 12.6 81 8-88 11-103 (120)
171 COG0497 RecN ATPase involved i 55.5 3.6E+02 0.0079 30.7 22.5 68 278-346 114-182 (557)
172 PF10498 IFT57: Intra-flagella 55.4 3E+02 0.0064 29.7 16.4 56 432-492 249-304 (359)
173 cd00632 Prefoldin_beta Prefold 55.2 1.3E+02 0.0028 25.8 9.4 73 420-492 22-94 (105)
174 KOG0976|consensus 52.3 4.6E+02 0.0099 30.9 46.7 64 285-348 334-399 (1265)
175 KOG4674|consensus 51.7 7E+02 0.015 32.9 62.9 82 273-354 521-605 (1822)
176 KOG0046|consensus 50.3 14 0.0003 40.4 3.1 91 682-789 12-105 (627)
177 PF14643 DUF4455: Domain of un 49.3 4.3E+02 0.0094 29.7 41.9 59 208-266 61-120 (473)
178 KOG4302|consensus 47.6 5.2E+02 0.011 30.2 33.7 34 56-89 14-47 (660)
179 PF10498 IFT57: Intra-flagella 46.4 4.1E+02 0.0088 28.6 16.2 53 30-87 216-268 (359)
180 KOG4302|consensus 46.2 5.4E+02 0.012 30.0 34.6 83 276-361 105-197 (660)
181 TIGR02338 gimC_beta prefoldin, 46.1 1.7E+02 0.0036 25.4 8.7 74 420-493 26-99 (110)
182 PF09069 EF-hand_3: EF-hand; 45.2 92 0.002 25.9 6.4 63 650-716 3-76 (90)
183 KOG3341|consensus 45.2 2.2E+02 0.0047 27.7 9.6 55 700-758 113-167 (249)
184 PRK11637 AmiB activator; Provi 44.2 4.8E+02 0.01 28.9 26.8 56 56-111 43-98 (428)
185 PF05557 MAD: Mitotic checkpoi 43.0 1.2E+02 0.0025 36.4 9.8 33 529-561 554-588 (722)
186 PF09403 FadA: Adhesion protei 42.9 2.5E+02 0.0053 25.1 13.0 86 207-292 22-107 (126)
187 PF00261 Tropomyosin: Tropomyo 42.8 3.6E+02 0.0079 27.0 25.5 51 213-263 107-157 (237)
188 KOG1707|consensus 42.2 25 0.00055 39.4 3.6 58 647-711 312-373 (625)
189 KOG2871|consensus 42.2 19 0.00041 37.6 2.5 71 648-719 307-378 (449)
190 PHA02562 46 endonuclease subun 41.9 5.9E+02 0.013 29.3 27.4 25 470-494 332-356 (562)
191 KOG4347|consensus 41.8 27 0.00058 39.5 3.7 60 648-709 553-612 (671)
192 PF11802 CENP-K: Centromere-as 41.1 4E+02 0.0087 27.1 16.7 57 211-267 91-147 (268)
193 PF07106 TBPIP: Tat binding pr 39.4 3.3E+02 0.0072 25.6 11.6 26 527-552 140-165 (169)
194 TIGR03185 DNA_S_dndD DNA sulfu 39.3 7.1E+02 0.015 29.4 32.3 30 317-346 424-453 (650)
195 COG1579 Zn-ribbon protein, pos 39.2 4.1E+02 0.009 26.6 17.8 125 209-349 28-152 (239)
196 PF12998 ING: Inhibitor of gro 38.9 2.4E+02 0.0052 23.8 13.3 85 11-95 9-96 (105)
197 PF09403 FadA: Adhesion protei 38.8 2.9E+02 0.0062 24.7 12.6 86 55-140 22-107 (126)
198 COG1382 GimC Prefoldin, chaper 38.8 2.7E+02 0.0059 24.5 9.6 65 421-485 30-94 (119)
199 KOG0963|consensus 38.5 6.6E+02 0.014 28.8 26.2 40 3-42 97-136 (629)
200 KOG0751|consensus 38.0 60 0.0013 35.4 5.4 55 658-715 82-136 (694)
201 PF03962 Mnd1: Mnd1 family; I 37.7 3.8E+02 0.0083 25.8 14.1 95 13-107 62-168 (188)
202 PF12718 Tropomyosin_1: Tropom 37.4 3.3E+02 0.0071 24.9 15.2 32 124-155 75-106 (143)
203 PF05597 Phasin: Poly(hydroxya 36.6 3.2E+02 0.0069 24.6 10.8 49 442-494 39-91 (132)
204 PF04065 Not3: Not1 N-terminal 36.5 4.5E+02 0.0098 26.3 14.9 57 91-149 52-108 (233)
205 COG1579 Zn-ribbon protein, pos 35.7 4.7E+02 0.01 26.3 22.7 88 58-156 29-116 (239)
206 PF10591 SPARC_Ca_bdg: Secrete 35.7 24 0.00052 30.8 1.8 23 652-674 90-112 (113)
207 PF00404 Dockerin_1: Dockerin 35.2 36 0.00078 19.7 1.8 14 660-673 1-14 (21)
208 PF14942 Muted: Organelle biog 35.0 3.6E+02 0.0078 24.7 12.0 76 436-517 67-143 (145)
209 PF15450 DUF4631: Domain of un 34.9 7E+02 0.015 28.0 44.7 51 58-108 90-144 (531)
210 PF05667 DUF812: Protein of un 34.9 7.8E+02 0.017 28.6 31.9 28 320-347 407-434 (594)
211 PF05531 NPV_P10: Nucleopolyhe 34.8 2.4E+02 0.0051 22.6 8.0 56 283-340 6-61 (75)
212 PRK10869 recombination and rep 34.6 7.7E+02 0.017 28.4 26.7 42 99-140 185-226 (553)
213 KOG0169|consensus 34.0 5.5E+02 0.012 30.3 12.4 142 641-799 197-350 (746)
214 PF14658 EF-hand_9: EF-hand do 33.9 48 0.001 25.7 2.9 31 648-678 33-64 (66)
215 KOG0998|consensus 33.3 19 0.00041 43.4 1.1 65 647-714 280-344 (847)
216 PF09325 Vps5: Vps5 C terminal 33.2 4.9E+02 0.011 25.8 24.3 49 501-561 109-157 (236)
217 PF05667 DUF812: Protein of un 32.5 8.5E+02 0.018 28.3 31.0 89 243-344 487-577 (594)
218 TIGR02338 gimC_beta prefoldin, 31.6 3.4E+02 0.0074 23.4 9.5 22 14-35 4-25 (110)
219 PF04065 Not3: Not1 N-terminal 31.5 5.4E+02 0.012 25.7 13.6 48 392-441 54-101 (233)
220 PLN02228 Phosphoinositide phos 31.4 1.6E+02 0.0034 33.8 7.8 115 648-773 22-146 (567)
221 PF04912 Dynamitin: Dynamitin 31.1 7.3E+02 0.016 27.1 15.1 146 1-155 234-387 (388)
222 PHA02562 46 endonuclease subun 30.7 8.7E+02 0.019 27.9 30.6 11 170-180 307-317 (562)
223 PF00038 Filament: Intermediat 30.6 6.4E+02 0.014 26.3 31.1 56 56-111 50-105 (312)
224 PRK09343 prefoldin subunit bet 30.4 3.8E+02 0.0083 23.6 9.6 66 421-486 31-96 (121)
225 PF09789 DUF2353: Uncharacteri 30.3 6.7E+02 0.015 26.4 21.8 89 424-512 89-177 (319)
226 PF07304 SRA1: Steroid recepto 29.7 1.8E+02 0.0039 27.1 6.6 40 207-247 67-108 (157)
227 PRK11546 zraP zinc resistance 29.3 4.5E+02 0.0097 24.1 11.0 45 419-463 45-89 (143)
228 PF02403 Seryl_tRNA_N: Seryl-t 29.1 3.6E+02 0.0079 23.0 9.8 71 8-80 24-94 (108)
229 cd00632 Prefoldin_beta Prefold 28.9 3.7E+02 0.008 22.9 10.2 10 58-67 68-77 (105)
230 KOG1265|consensus 28.5 2.3E+02 0.005 33.7 8.3 86 631-718 204-302 (1189)
231 PRK11637 AmiB activator; Provi 28.5 8.4E+02 0.018 27.0 28.0 18 773-790 410-427 (428)
232 KOG0964|consensus 27.1 1.2E+03 0.027 28.5 40.4 42 501-542 479-520 (1200)
233 KOG0977|consensus 26.8 9.9E+02 0.022 27.3 27.6 56 56-111 116-171 (546)
234 COG3645 Uncharacterized phage- 26.4 30 0.00065 30.8 0.8 25 758-785 59-84 (135)
235 COG4103 Uncharacterized protei 26.1 69 0.0015 28.8 3.0 61 654-717 34-96 (148)
236 PF08261 Carcinustatin: Carcin 26.1 30 0.00066 14.6 0.4 6 754-759 2-7 (8)
237 PF09325 Vps5: Vps5 C terminal 25.7 6.6E+02 0.014 24.8 21.0 33 123-155 122-154 (236)
238 KOG0971|consensus 25.7 1.3E+03 0.027 28.1 44.1 85 533-636 942-1026(1243)
239 PF02403 Seryl_tRNA_N: Seryl-t 25.5 4.3E+02 0.0092 22.6 11.7 84 261-346 16-99 (108)
240 KOG0976|consensus 25.4 1.2E+03 0.026 27.7 43.4 49 504-554 460-512 (1265)
241 KOG2391|consensus 25.4 5E+02 0.011 27.3 9.2 27 687-713 314-340 (365)
242 PF00804 Syntaxin: Syntaxin; 24.8 4E+02 0.0087 22.0 10.1 65 427-493 6-70 (103)
243 cd07313 terB_like_2 tellurium 24.7 62 0.0013 27.5 2.5 52 664-716 13-66 (104)
244 PF15017 AF1Q: Drug resistance 24.6 27 0.00058 28.6 0.2 10 778-787 71-80 (87)
245 KOG1707|consensus 24.3 1.2E+02 0.0027 34.2 5.2 50 648-697 193-243 (625)
246 PF07106 TBPIP: Tat binding pr 24.1 6E+02 0.013 23.8 9.8 97 120-233 70-166 (169)
247 KOG0041|consensus 24.1 2.8E+02 0.0061 26.7 6.7 78 632-711 116-199 (244)
248 PF08657 DASH_Spc34: DASH comp 24.0 7.1E+02 0.015 25.4 10.2 56 441-499 156-211 (259)
249 PF05957 DUF883: Bacterial pro 23.6 4.3E+02 0.0093 21.9 8.5 19 25-43 3-21 (94)
250 PF09068 EF-hand_2: EF hand; 23.2 5E+02 0.011 23.2 8.0 90 623-713 6-123 (127)
251 PF06576 DUF1133: Protein of u 23.1 70 0.0015 29.7 2.6 66 728-799 103-176 (176)
252 TIGR00634 recN DNA repair prot 22.7 1.2E+03 0.026 26.9 28.9 27 463-489 348-374 (563)
253 PF07544 Med9: RNA polymerase 22.5 4.3E+02 0.0093 21.5 7.4 59 90-151 23-81 (83)
254 KOG0977|consensus 22.4 1.2E+03 0.026 26.6 26.3 26 531-556 362-387 (546)
255 PLN02222 phosphoinositide phos 22.1 2.3E+02 0.0049 32.6 6.9 112 649-772 24-142 (581)
256 PF08461 HTH_12: Ribonuclease 21.9 1.2E+02 0.0025 23.6 3.2 37 663-700 10-46 (66)
257 KOG4065|consensus 21.3 1.6E+02 0.0035 25.4 4.1 71 682-761 62-139 (144)
258 PRK10929 putative mechanosensi 20.8 1.8E+03 0.038 28.0 44.1 10 13-22 26-35 (1109)
259 PF05008 V-SNARE: Vesicle tran 20.8 3.3E+02 0.0072 21.6 6.0 49 500-555 29-77 (79)
260 TIGR00634 recN DNA repair prot 20.3 1.4E+03 0.029 26.5 28.3 70 271-340 298-372 (563)
No 1
>KOG0517|consensus
Probab=100.00 E-value=8.7e-48 Score=435.15 Aligned_cols=575 Identities=16% Similarity=0.282 Sum_probs=511.6
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 1 MVANQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQLNELMNRFDNLNEGASQRM 80 (801)
Q Consensus 1 ~~~~~~~~~~d~~~v~~~l~~~~~l~~el~~~~~~v~~l~~~g~~L~~~~~~~~~~~i~~~l~~L~~rw~~L~~~~~~r~ 80 (801)
|+..+..+..++.++...+.+|++|+.||.++++.++.|...|..|+...+ .-.+.|+.++..|+.+|..|...+.++.
T Consensus 1290 ~l~a~Desy~~~~nl~~k~~kHqAFeaELaank~~l~~i~~eG~~L~~ekp-e~~~~V~~kl~~L~~~W~~Le~~t~~Kg 1368 (2473)
T KOG0517|consen 1290 MLMAQDESYRDARNLHSKWLKHQAFEAELAANKEWLEKIEKEGQELVSEKP-ELKALVEKKLRELHKQWDELEKTTQEKG 1368 (2473)
T ss_pred hhhccccchhhhhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhcCC-ccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778889999999999999999999999999999999999999998764 4479999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhcccC
Q psy13767 81 DALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVG 160 (801)
Q Consensus 81 ~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~ 160 (801)
..|.++-.. ..|...+.++..||.+.|..|.+ .+.|.|+.+++.++++|+.++.++..+...|..|.+.+..+.. .+
T Consensus 1369 ~~L~qA~~q-~~~~qs~~D~~~~l~~le~qL~S-~D~G~DL~Svn~llkKqq~lEsem~~~~~kv~el~s~~~~ma~-~~ 1445 (2473)
T KOG0517|consen 1369 RKLFQANRQ-ELLLQSLADAKKKLDELESQLQS-DDTGKDLTSVNDLLKKQQVLESEMEVRAQKVAELQSQAKAMAE-EG 1445 (2473)
T ss_pred HHHHHHHhH-HHHHHHHHHHHHHHHHHHHHhcC-CCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc-cC
Confidence 999999884 88999999999999999999976 5679999999999999999999999999999999999999986 44
Q ss_pred hhhhhhHhhhHHhHHHHHHHHHHHHhhhhhhh------------------h-----------hhh-cc------------
Q psy13767 161 EDEAAGVADKLQDTADRYGALVEASDNLGQYA------------------F-----------LYN-QL------------ 198 (801)
Q Consensus 161 ~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~L------------------W-----------~~~-~l------------ 198 (801)
| ++..|.....++..||..|..++..|+..| | .|+ .+
T Consensus 1446 ~-~a~~I~~~~~~v~~Rf~~L~~Pl~~R~~~Le~S~e~hQf~~dvddE~~WV~ErlP~A~s~d~G~~L~~~q~l~KK~q~ 1524 (2473)
T KOG0517|consen 1446 H-SAENIEETTLAVLERFEDLLGPLQERRKQLEASKELHQFVRDVDDELLWVAERLPLASSTDYGENLQTVQSLHKKNQT 1524 (2473)
T ss_pred c-chhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhCccCCchhhccChHHHHHHHHHhHH
Confidence 4 889999999999999999999999999888 5 010 11
Q ss_pred ---------------------ccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 199 ---------------------ILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLR 257 (801)
Q Consensus 199 ---------------------~Ls~~~~~~~~i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~ 257 (801)
..+++++.+..|..++.+|...|..|...+..|.+.|+++... ++|+-++.++++||.
T Consensus 1525 Lq~EI~~H~prI~~vl~~gq~Li~~~h~~a~~i~~~~~eLe~aW~eL~~a~e~R~~~L~~a~ka-QQY~fDaaE~EaWm~ 1603 (2473)
T KOG0517|consen 1525 LQAEIKGHQPRINDVLERGQSLIDSGHPEAEAIEEKLQELESAWQELKEACELRRQRLDEAVKA-QQYYFDAAEAEAWMG 1603 (2473)
T ss_pred HHHHHHhcchHHHHHHHHhHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHh
Confidence 0125688999999999999999999999999999999999998 999999999999999
Q ss_pred HHHHhhhcCCCCCCChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy13767 258 DLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALF 337 (801)
Q Consensus 258 ~~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~~w~~l~~~~ 337 (801)
+.+..+.+.+ .|.|..+...++++|+.++.++..|...|..|...|+.|+. .++|+++.|..+...|...|..|..++
T Consensus 1604 Eqel~m~see-~gkDE~sa~~llkKH~~Le~~v~~Y~~~i~qL~~~~~~lv~-~~hP~~eri~~rQ~qldkly~~Lk~LA 1681 (2473)
T KOG0517|consen 1604 EQELYMMSEE-YGKDEDSALKLLKKHQALEQEVEDYAQTIEQLAQKAQALVE-ANHPESERISRRQSQLDKLYAGLKDLA 1681 (2473)
T ss_pred hhHHHHhhhh-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998876 88999999999999999999999999999999999999999 699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcCcHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhhhhccchHHHhhhhcCCc
Q psy13767 338 AKREENLIHAMEKAMEFHETLQRKGEQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSLP 417 (801)
Q Consensus 338 ~~r~~~L~~~l~~~~~~~~~~~~l~~~~ti~~l~~kr~~wl~~a~~~a~~~~~~L~~~~edlk~~l~~~e~~~r~~~~~~ 417 (801)
.+|+.+|++++ .++.+.+++++ ++.|+.+ +..+. .+.+++
T Consensus 1682 ~eRr~~Lee~l----~L~el~RE~dD------------------------LeqWIae-----~e~vA-------gS~elG 1721 (2473)
T KOG0517|consen 1682 EERRRRLEETL----RLYELSREVDD------------------------LEQWIAE-----KEVVA-------GSEELG 1721 (2473)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHH------------------------HHHHHHH-----HHHHh-------cChhhc
Confidence 99999999999 67778777643 3334433 22222 245789
Q ss_pred ccHHHHHHHHHHHHHHHHHHH-HhhHhHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 418 EDDQEARTQLAEHEKFLRELA-EKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERLRNHLR 496 (801)
Q Consensus 418 ~d~~~l~~~l~~~~~~~~~l~-~~~~~v~~l~~~~~~Ll~~~~p~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~ 496 (801)
.|++++..+..+|.+|..++. ....+|++++.+++.||..+||++. .|..|-+.|++.|.+|+..+..|.+.|..+..
T Consensus 1722 qD~EHv~~Lq~KF~eFa~~te~iG~eRv~~~n~la~~LI~~ghs~a~-tvaewkd~LneaW~~LlELi~tR~q~Laas~e 1800 (2473)
T KOG0517|consen 1722 QDFEHVTLLQEKFREFARDTEAIGSERVAACNLLADELIERGHSAAA-TVAEWKDGLNEAWADLLELIDTRGQKLAASRE 1800 (2473)
T ss_pred CChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 6778999999999999999999875 89999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCccccccCCCCCCCC
Q psy13767 497 SLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYGP 576 (801)
Q Consensus 497 ~~~~f~~~~~el~~Wl~~~e~~l~~~~~~~~~~d~~~~~~~l~~hk~~~~ei~~~~~~~~~l~~~~~~~~~~~~L~~~~~ 576 (801)
.++ |..++.++..||.++-..| +..++.|+..++.+++.|..|+.||....++|..|.+.+.+ |..
T Consensus 1801 lhr-f~~D~~E~l~riqeK~~~l----p~~lgRD~~s~~al~R~H~~fe~dl~~l~~Qvqql~e~a~r------Lq~--- 1866 (2473)
T KOG0517|consen 1801 LHR-FHRDAREVLGRIQEKQAAL----PDDLGRDLNSAEALQRKHEAFEHDLVALEPQVQQLQEDAAR------LQK--- 1866 (2473)
T ss_pred HHH-HHhhHHHHHHHHHHHHhhC----chhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH---
Confidence 855 8888999999999988777 46799999999999999999999999999999999999987 543
Q ss_pred CCCCCCCCCCCCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhHHHHHH
Q psy13767 577 RFPPKGSKGAEPQFRNPRCRLLWDTWRNVWLLAWERQRRLQERLNYLIELEKVKNFSWDDWRKRFLRFMNHKKSRL 652 (801)
Q Consensus 577 ~~~~~~~~~~~~~~i~~~~~~L~~~W~~L~~~~~~r~~~L~~~l~~l~e~~~~~~f~f~~~~~~~l~~~~~~~~~~ 652 (801)
.+ .|+.++.|..+-..+...|..|...|..|+..|..+.+. |.|.+....++.||...+..+
T Consensus 1867 ~Y-----aG~kA~aI~~reqeV~qaW~~L~~~~~~Rr~~L~~t~Dl---------~rF~~~VRDllsWmd~v~~qi 1928 (2473)
T KOG0517|consen 1867 AY-----AGDKAEAIQQREQEVLQAWAELQGACEARRDRLADTSDL---------FRFFSMVRDLLSWMDEVIRQI 1928 (2473)
T ss_pred cc-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHh
Confidence 22 236778999999999999999999999999999998875 344443333888987554444
No 2
>KOG0517|consensus
Probab=100.00 E-value=9.3e-48 Score=434.90 Aligned_cols=552 Identities=20% Similarity=0.308 Sum_probs=494.6
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhhCChhhHHHHHH---HHHHHHHHHHHHHHHHHHH
Q psy13767 3 ANQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIER---QLNELMNRFDNLNEGASQR 79 (801)
Q Consensus 3 ~~~~~~~~d~~~v~~~l~~~~~l~~el~~~~~~v~~l~~~g~~L~~~~~~~~~~~i~~---~l~~L~~rw~~L~~~~~~r 79 (801)
-+.+++|.|-.++++++++|+.|..||.++.+.|..|...+..|.....+ .+.|.. ++..+...|..|...+..|
T Consensus 759 vss~d~G~DE~saq~LlkrH~~l~~El~a~~~~i~~L~eQa~~l~~~~~e--~p~V~~~~~R~~~i~q~Y~El~~lA~lR 836 (2473)
T KOG0517|consen 759 VSSEDVGHDEASAQALLKRHRDLEEELRAYRGDIDRLEEQASALPQESPE--GPEVRQPLQRQDTISQDYEELQELAQLR 836 (2473)
T ss_pred ccchhcCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccCC--CcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999876432 355655 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhccc
Q psy13767 80 MDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLV 159 (801)
Q Consensus 80 ~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~ 159 (801)
++.|++++.+|. |+..++.+..||.++|..|..+.+ |.+++.|+....++..|..+|......+..++..|+.|+. .
T Consensus 837 rq~L~dalaLy~-~~se~d~~ElWi~Eke~~L~~m~~-~~~~E~vev~q~rFe~l~~eM~~~~~~v~~Vn~~a~qL~~-~ 913 (2473)
T KOG0517|consen 837 RQRLEDALALYG-FYSECDACELWIKEKEKWLATMSP-PDSLEDVEVMQHRFEKLEQEMNTLAGRVAEVNDIARQLLE-V 913 (2473)
T ss_pred HHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHhccCC-CCChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-c
Confidence 999999999876 777789999999999999988654 7789999999999999999999999999999999999999 7
Q ss_pred ChhhhhhHhhhHHhHHHHHHHHHHHHhhhhhhh------------------h---h----------hhcc--------cc
Q psy13767 160 GEDEAAGVADKLQDTADRYGALVEASDNLGQYA------------------F---L----------YNQL--------IL 200 (801)
Q Consensus 160 ~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~L------------------W---~----------~~~l--------~L 200 (801)
+|+..+.|..+...|+.||..|......|+..| | + ++|+ .|
T Consensus 914 ghp~sd~I~~~Q~~Ln~rW~~l~~l~~qk~~~L~~a~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL 993 (2473)
T KOG0517|consen 914 GHPNSDEILARQDKLNQRWQQLRELVDQKKVALESALRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRL 993 (2473)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHH
Confidence 888999999999999999999999999999887 6 1 1221 11
Q ss_pred C-------------------------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy13767 201 S-------------------------PRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMAT 255 (801)
Q Consensus 201 s-------------------------~~~~~~~~i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~W 255 (801)
+ .+|..+..|..++.+|...|..|...+.+|...++++..+ +.|..+++.+..|
T Consensus 994 ~~lErdl~aie~kv~~L~~ea~~v~~~~Paea~~i~~r~~el~~~w~~l~~~~~~~~~~l~ea~~l-Q~Fl~dld~f~~W 1072 (2473)
T KOG0517|consen 994 QGLERDLAAIEAKVAALEKEANKVEEEHPAEAQAINARIAELQALWEQLQQRLQEREERLEEAGGL-QRFLRDLDDFQAW 1072 (2473)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 1 4677899999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHhhhcCCCCCCChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHH
Q psy13767 256 LRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTA 335 (801)
Q Consensus 256 l~~~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~~w~~l~~ 335 (801)
|..+...+.+.+. +.|+.+++.+|.+|.++..+|..++..+..+...|+.+......|..-.+.+++..|...|+.|..
T Consensus 1073 l~~tq~~~~see~-p~~l~eAe~LL~qH~~l~eEI~~~~e~y~~~~~~ge~~~~g~~~p~~~~l~erL~~L~~gw~eL~~ 1151 (2473)
T KOG0517|consen 1073 LESTQTQVASEEG-PVDLAEAEQLLKQHAALREEIDGYQEDYQRMRALGETVADGQTDPQYLFLRERLQALGTGWEELHR 1151 (2473)
T ss_pred HHHHHHHHhcccC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHhHHHHHHHHHHhHHHHHHH
Confidence 9999999988874 569999999999999999999999999999999999888755677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcCcHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhhhhccchHHHhhhhcC
Q psy13767 336 LFAKREENLIHAMEKAMEFHETLQRKGEQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNS 415 (801)
Q Consensus 336 ~~~~r~~~L~~~l~~~~~~~~~~~~l~~~~ti~~l~~kr~~wl~~a~~~a~~~~~~L~~~~edlk~~l~~~e~~~r~~~~ 415 (801)
+|+.|...|.+++ .|+.|.++.... ...+ .+.+++. ...+
T Consensus 1152 mWe~Rq~~L~Q~l----~lQ~F~Rda~q~------------------------ea~l-----------~~qE~~L-~~d~ 1191 (2473)
T KOG0517|consen 1152 MWENRQKWLSQGL----DLQLFLRDARQA------------------------EATL-----------SNQEAFL-SHDN 1191 (2473)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHH------------------------HHHH-----------hhHHHHH-hccc
Confidence 9999999999999 799999987431 1111 1123322 2467
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 416 LPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERLRNHL 495 (801)
Q Consensus 416 ~~~d~~~l~~~l~~~~~~~~~l~~~~~~v~~l~~~~~~Ll~~~~p~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~ 495 (801)
+|.+++.++..|++|.+|...|....+++..+...|+.|+...|+++. .|+++.+.|..||..+...+.++..+|..++
T Consensus 1192 lp~sle~ae~~LKrh~DF~~tm~a~~~ki~a~~~~gd~Lv~~~h~~s~-~I~ek~~~I~~r~~~nr~rA~q~~~~L~~sl 1270 (2473)
T KOG0517|consen 1192 LPDSLEEAEALLKRHRDFLTTMDANDEKIEALVDTGDKLVSEGHIDSD-KIREKAQSILARRKANRERAQQRLRKLKDSL 1270 (2473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcCCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999975 8999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCccccccCCCCCCC
Q psy13767 496 RSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYG 575 (801)
Q Consensus 496 ~~~~~f~~~~~el~~Wl~~~e~~l~~~~~~~~~~d~~~~~~~l~~hk~~~~ei~~~~~~~~~l~~~~~~~~~~~~L~~~~ 575 (801)
.. +.|...+++|..||.++ .+.+ .+....++..+...+.+|++|+.||.++++.+++|.+.|.. |+...
T Consensus 1271 el-Q~flqd~~EL~~Wi~EK--~l~a--~Desy~~~~nl~~k~~kHqAFeaELaank~~l~~i~~eG~~------L~~ek 1339 (2473)
T KOG0517|consen 1271 EL-QEFLQDCDELKLWIEEK--MLMA--QDESYRDARNLHSKWLKHQAFEAELAANKEWLEKIEKEGQE------LVSEK 1339 (2473)
T ss_pred HH-HHHHHHHHHHHHHHHHH--hhhc--cccchhhhhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH------HHhcC
Confidence 87 66999999999999965 5544 56677899999999999999999999999999999999997 77766
Q ss_pred CCCCCCCCCCCCCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 576 PRFPPKGSKGAEPQFRNPRCRLLWDTWRNVWLLAWERQRRLQERLNY 622 (801)
Q Consensus 576 ~~~~~~~~~~~~~~~i~~~~~~L~~~W~~L~~~~~~r~~~L~~~l~~ 622 (801)
|.+.+ .|.+++..|+.+|..|...+.++.+.|.+|...
T Consensus 1340 pe~~~---------~V~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~~q 1377 (2473)
T KOG0517|consen 1340 PELKA---------LVEKKLRELHKQWDELEKTTQEKGRKLFQANRQ 1377 (2473)
T ss_pred Cccch---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 65544 789999999999999999999999999999764
No 3
>KOG0040|consensus
Probab=100.00 E-value=4.5e-39 Score=357.60 Aligned_cols=570 Identities=17% Similarity=0.250 Sum_probs=498.4
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 7 PPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQLNELMNRFDNLNEGASQRMDALEQA 86 (801)
Q Consensus 7 ~~~~d~~~v~~~l~~~~~l~~el~~~~~~v~~l~~~g~~L~~~~~~~~~~~i~~~l~~L~~rw~~L~~~~~~r~~~Le~~ 86 (801)
..-.||.+++..+++|++|+.|+.++...|-.|..+|..++..+|++ .+.|+.++.+|+..|.-|...+.++.-+|..+
T Consensus 70 ~~y~dptnlq~k~qkhqa~eaevqa~s~~i~~ld~t~~~~~~~~h~a-~e~~~~~l~el~~lw~~l~~~~~ekg~kl~~a 148 (2399)
T KOG0040|consen 70 ESYRDPTNLQGKIQKHQAFEAEVQAHSRAIVELDKTGNEMITMGHFA-SEEIKARLEELHHLWDLLLEKLLEKGIKLLQA 148 (2399)
T ss_pred cccCCchhHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34578999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhcccChhhhhh
Q psy13767 87 MAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAG 166 (801)
Q Consensus 87 ~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~ 166 (801)
+.+ .+|...+.+++.||.++|. +.....+|.|++.++.+.+++.+|+.++.+++..|..+++.|..|+. .+|++.+.
T Consensus 149 l~~-~q~~~~c~~i~~wi~dke~-~~t~~e~g~d~e~~evl~~kf~~f~~~~~~~e~rv~evnq~a~~~~~-e~h~e~~~ 225 (2399)
T KOG0040|consen 149 LKL-VQYLRECEDILEWIGDKEA-IVTSEELGQDLEHVEVLQKKFEDFQKELAAHEYRVNEVNQYADKLVE-EGHPELDL 225 (2399)
T ss_pred HHH-HHHHHHHHHHHHHhccchh-eeeHHHhcccHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHH-cCCCchHH
Confidence 996 7799999999999999996 55667789999999999999999999999999999999999999998 78889999
Q ss_pred HhhhHHhHHHHHHHHHHHHhhhhhhh------------------h-----------hhh-cc------------------
Q psy13767 167 VADKLQDTADRYGALVEASDNLGQYA------------------F-----------LYN-QL------------------ 198 (801)
Q Consensus 167 i~~~~~~l~~r~~~l~~~~~~r~~~L------------------W-----------~~~-~l------------------ 198 (801)
|..+..+++..|..|....-.|...| | .|+ ++
T Consensus 226 i~~k~~evn~aw~rl~~la~~rq~~l~~a~~~qrf~rd~~et~~wi~ek~~~l~sddygrdl~~~q~l~~~h~g~erdla 305 (2399)
T KOG0040|consen 226 IQKKQDEVNAAWQRLKGLALQRQEKLFGAAEVQRFNRDVDETIAWIKEKEPVLSSDDYGRDLASVQALQRKHEGLERDLA 305 (2399)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHhcccHHHHHHHHhhccccccccccchhHHHHHHHHHhccchhhhHH
Confidence 99999999999999999999998887 6 011 11
Q ss_pred --------------ccC-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13767 199 --------------ILS-PRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNL 263 (801)
Q Consensus 199 --------------~Ls-~~~~~~~~i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~l 263 (801)
.|. +||..++.|+.+-.++...|+.+...+..|...|++...+ +.|..++.+|.+|++..-..+
T Consensus 306 ~l~~kv~~l~~~a~~l~~~hp~~a~qi~~~~~~~~~~w~~~~~~a~~r~~~l~~s~~~-hrf~ad~rdL~~w~~~~~aaI 384 (2399)
T KOG0040|consen 306 ALEDKVKELCAEAEKLTLSHPDDAPQIQEKKEDLVSSWEHIRTLATERKEKLQASYWL-HRFLADFRDLSSWINEMKAAI 384 (2399)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHhhhHHHHHHHHHHHHHHc
Confidence 011 6888999999999999999999999999999999999998 899999999999999998888
Q ss_pred hcCCCCCCChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 264 NSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREEN 343 (801)
Q Consensus 264 ~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~ 343 (801)
...+ ...|+..++.+|+.|+.+..+|+++..+++.-...|+.+.. .+++.+++|+.++..+...|..|.++|+.|...
T Consensus 385 nade-l~~dvag~e~lL~~hqEhK~eIds~~dSf~~~~~~gq~l~~-~~~~as~ev~ekl~~le~e~~~ll~lwe~r~~~ 462 (2399)
T KOG0040|consen 385 NADE-LAKDVAGAEALLDRHQEHKGEIDAREDSFKSADESGQKLVE-AGHYASDEVREKLEILDNEKSALLELWEERRIQ 462 (2399)
T ss_pred Cchh-hHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhccccHHHHH-ccccccHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 7665 45688889999999999999999999999999999999999 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCcHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhhhhccchHHHhhhhcCCcccHHHH
Q psy13767 344 LIHAMEKAMEFHETLQRKGEQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSLPEDDQEA 423 (801)
Q Consensus 344 L~~~l~~~~~~~~~~~~l~~~~ti~~l~~kr~~wl~~a~~~a~~~~~~L~~~~edlk~~l~~~e~~~r~~~~~~~d~~~l 423 (801)
.+.++ .++.|+++..++ .+||... +++. ....++...+++
T Consensus 463 yeqcm----d~~lfyrdteq~----------d~wmskq-------------------------eafl-~nedlg~sl~S~ 502 (2399)
T KOG0040|consen 463 YEQCM----DLQLFYRDTEQV----------DTWMSKQ-------------------------EAFL-ANEDLGDSLDSV 502 (2399)
T ss_pred HHHHH----HHHHHhhhHHHH----------HHHHHHH-------------------------HHHH-HhhhhcccchhH
Confidence 99998 799999987543 3477652 1111 134567778899
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy13767 424 RTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERLRNHLRSLQDLDS 503 (801)
Q Consensus 424 ~~~l~~~~~~~~~l~~~~~~v~~l~~~~~~Ll~~~~p~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~~~~~f~~ 503 (801)
+.++++|+.|+..+..++..+..+...+..++...|.+.. .+..+-..+..|-..+......|+..|...... +.|..
T Consensus 503 e~l~kkhedfEks~~aQEeki~~~d~~atkli~~~hy~~~-dv~~rr~~ll~rr~~l~e~a~~r~~~lk~s~~~-q~~~r 580 (2399)
T KOG0040|consen 503 EALLKKHEDFEKSLAAQEEKIIALDEFATKLIQGQHYAAE-DVAARRDALLARRDALREKAATRRRLLKESLLL-QQFYR 580 (2399)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccch-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHh
Confidence 9999999999999999999999999999999988887765 455556677778899999999999999998877 56889
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCccccccCCCCCCCCCCCCCCC
Q psy13767 504 LLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGS 583 (801)
Q Consensus 504 ~~~el~~Wl~~~e~~l~~~~~~~~~~d~~~~~~~l~~hk~~~~ei~~~~~~~~~l~~~~~~~~~~~~L~~~~~~~~~~~~ 583 (801)
+++++..||.+.-... ..+...||+.++..+.+|+.|..|+.+.+..++.+.+.|.. ++..++..
T Consensus 581 d~de~~~wi~Ek~~~a----~dd~y~d~~nlk~kvqk~q~fe~el~An~~r~~~i~~~g~~------~i~~~h~A----- 645 (2399)
T KOG0040|consen 581 DSDELKSWINEKLKTA----TDESYKDPTNLKGKVQKHQNFEKELAANKSRLEDIQKTGQE------LIEGGHYA----- 645 (2399)
T ss_pred hHHHHHHHHHHHhccc----ccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHhhhHH-----
Confidence 9999999999764332 35677899999999999999999999999999999999997 66655543
Q ss_pred CCCCCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhHHHHHHH
Q psy13767 584 KGAEPQFRNPRCRLLWDTWRNVWLLAWERQRRLQERLNYLIELEKVKNFSWDDWRKRFLRFMNHKKSRLT 653 (801)
Q Consensus 584 ~~~~~~~i~~~~~~L~~~W~~L~~~~~~r~~~L~~~l~~l~e~~~~~~f~f~~~~~~~l~~~~~~~~~~~ 653 (801)
.+.+..++..+...|..+...+......|..+-.. +|+|.+|-+ ...|+.+....+.
T Consensus 646 ----~d~v~~r~~ev~~Lw~~l~~aT~~kg~kl~ea~qq--------~qf~~n~ed-ve~wl~e~e~ql~ 702 (2399)
T KOG0040|consen 646 ----ADNVTTRLSEVASLWEELLEATKKKGTKLREANQQ--------QQFNRNIED-IELWLSEVEGQVA 702 (2399)
T ss_pred ----HHHHhHhHHHHHHHHHHHHhhcccccHHHHHHHHh--------hhhhccHHH-HHHHHHHHHHHHh
Confidence 34788899999999999999999988888887654 455555655 7778865555543
No 4
>KOG0040|consensus
Probab=100.00 E-value=9e-35 Score=323.62 Aligned_cols=458 Identities=20% Similarity=0.328 Sum_probs=411.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q psy13767 55 RKAIERQLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDAL 134 (801)
Q Consensus 55 ~~~i~~~l~~L~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l 134 (801)
++.|+++-..+-.||..+...+..|+.+|++++.+ +-|..+++++..||-++-... + +....||.+++..+++|++|
T Consensus 12 aediqerrq~vl~~y~~fk~~~~~~~~kleds~~~-q~fkrdadel~~wi~ekl~~~-~-~~~y~dptnlq~k~qkhqa~ 88 (2399)
T KOG0040|consen 12 AEDIQERRQEVLTRYQSFKERSAERRQKLEDSYRF-QYFKRDADELEKWIMEKLQIA-S-DESYRDPTNLQGKIQKHQAF 88 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHhcCHHHHHHHHHHHHHhh-h-hcccCCchhHHHHHHHHHHH
Confidence 57799999999999999999999999999999994 889999999999999987533 3 23467999999999999999
Q ss_pred HHHHHccCccHHHHHHHHHHhhcccChhhhhhHhhhHHhHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCchHHHHHHH
Q psy13767 135 HKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTDIKKKL 214 (801)
Q Consensus 135 ~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~LW~~~~l~Ls~~~~~~~~i~~~l 214 (801)
+.|+.++...+..|..+|..++. - +|++...|+.++
T Consensus 89 eaevqa~s~~i~~ld~t~~~~~~-~-------------------------------------------~h~a~e~~~~~l 124 (2399)
T KOG0040|consen 89 EAEVQAHSRAIVELDKTGNEMIT-M-------------------------------------------GHFASEEIKARL 124 (2399)
T ss_pred HHHHHHhhhHHHHHHhHHHHHHh-c-------------------------------------------ccchhHHHHHHH
Confidence 99999999999999999998886 2 355788899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHHHHHhccc
Q psy13767 215 ERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTK 294 (801)
Q Consensus 215 ~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~ 294 (801)
.+|...|+-|...+.+++-+|..++.+ .+|...|+++..||.++|..+.+.+ .|.|++.++-+.++|..|+.++.+++
T Consensus 125 ~el~~lw~~l~~~~~ekg~kl~~al~~-~q~~~~c~~i~~wi~dke~~~t~~e-~g~d~e~~evl~~kf~~f~~~~~~~e 202 (2399)
T KOG0040|consen 125 EELHHLWDLLLEKLLEKGIKLLQALKL-VQYLRECEDILEWIGDKEAIVTSEE-LGQDLEHVEVLQKKFEDFQKELAAHE 202 (2399)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHhccchheeeHHH-hcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999 7999999999999999999997765 78899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCcHHHHHHHh
Q psy13767 295 PEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHETLQRKGEQGTITALFAKR 374 (801)
Q Consensus 295 ~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~l~~~~~~~~~~~~l~~~~ti~~l~~kr 374 (801)
.+|..++..+..|+. .+||+.+.|..+.+.++..|.+|.+++-.|+..|-.+. .++.|.+++++ ||
T Consensus 203 ~rv~evnq~a~~~~~-e~h~e~~~i~~k~~evn~aw~rl~~la~~rq~~l~~a~----~~qrf~rd~~e--t~------- 268 (2399)
T KOG0040|consen 203 YRVNEVNQYADKLVE-EGHPELDLIQKKQDEVNAAWQRLKGLALQRQEKLFGAA----EVQRFNRDVDE--TI------- 268 (2399)
T ss_pred HhHHHHHHHHHHHHH-cCCCchHHHHHhHHHHHHHHHHHHHHHHHHHHhhccHH----HHHHhcccHHH--HH-------
Confidence 999999999999999 59999999999999999999999999999999999987 78999998863 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhhccchHHHhhhhcCCcccHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q psy13767 375 EENLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSLPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRI 454 (801)
Q Consensus 375 ~~wl~~a~~~a~~~~~~L~~~~edlk~~l~~~e~~~r~~~~~~~d~~~l~~~l~~~~~~~~~l~~~~~~v~~l~~~~~~L 454 (801)
.|+.+ |..+. .+.++|.|+..++.+..+|+.++++|...+..|..+...++.|
T Consensus 269 -~wi~e-------------------k~~~l-------~sddygrdl~~~q~l~~~h~g~erdla~l~~kv~~l~~~a~~l 321 (2399)
T KOG0040|consen 269 -AWIKE-------------------KEPVL-------SSDDYGRDLASVQALQRKHEGLERDLAALEDKVKELCAEAEKL 321 (2399)
T ss_pred -HHHhh-------------------ccccc-------cccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHH
Confidence 23332 22211 2567899999999999999999999999999999999999985
Q ss_pred HhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHH
Q psy13767 455 LVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTV 534 (801)
Q Consensus 455 l~~~~p~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~~~~~f~~~~~el~~Wl~~~e~~l~~~~~~~~~~d~~~~ 534 (801)
..+||++++.|+.+-+.+...|+.+...+..|...|+...-.. .|-..+.+|..|+..+-..++ ...++.|...+
T Consensus 322 -~~~hp~~a~qi~~~~~~~~~~w~~~~~~a~~r~~~l~~s~~~h-rf~ad~rdL~~w~~~~~aaIn---adel~~dvag~ 396 (2399)
T KOG0040|consen 322 -TLSHPDDAPQIQEKKEDLVSSWEHIRTLATERKEKLQASYWLH-RFLADFRDLSSWINEMKAAIN---ADELAKDVAGA 396 (2399)
T ss_pred -HhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhhhHHHHHHHHHHHHHHcC---chhhHHHHHHH
Confidence 5699999999999999999999999999999999999998874 588899999999999877766 46788999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCccccccCCCCCCCCCCCCCCCCCCCCCccChhHHHHHHHHHHHHHHHHHHHH
Q psy13767 535 ERLIEEHKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWRNVWLLAWERQR 614 (801)
Q Consensus 535 ~~~l~~hk~~~~ei~~~~~~~~~l~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~~~~L~~~W~~L~~~~~~r~~ 614 (801)
+.+|..|+++..+|.++...+..-...|+. |...++.. ...++.++..+..-|..|...|.+|..
T Consensus 397 e~lL~~hqEhK~eIds~~dSf~~~~~~gq~------l~~~~~~a---------s~ev~ekl~~le~e~~~ll~lwe~r~~ 461 (2399)
T KOG0040|consen 397 EALLDRHQEHKGEIDAREDSFKSADESGQK------LVEAGHYA---------SDEVREKLEILDNEKSALLELWEERRI 461 (2399)
T ss_pred HHHHHHHHHHhhhhHHHHHHHhhhccccHH------HHHccccc---------cHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999886 55544432 348999999999999999999999999
Q ss_pred HHHHHHHH
Q psy13767 615 RLQERLNY 622 (801)
Q Consensus 615 ~L~~~l~~ 622 (801)
..+++.++
T Consensus 462 ~yeqcmd~ 469 (2399)
T KOG0040|consen 462 QYEQCMDL 469 (2399)
T ss_pred HHHHHHHH
Confidence 99999876
No 5
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=100.00 E-value=2e-35 Score=218.59 Aligned_cols=73 Identities=70% Similarity=1.202 Sum_probs=70.7
Q ss_pred hhhhHHHHhhhcccccccccceeEcCCCccccCCcchhHHHhhhcCccceecCccHhhHHHhhhhcCCCCccc
Q psy13767 727 EKIHDEVKRLVQLCTCRQKFRVFQVGEGKYRFGDSQKLRLVRILRSTVMVRVGGGWVALDEFLIKNDPCRDNV 799 (801)
Q Consensus 727 ~~i~~~v~~~~~~c~~~~~~~v~~~~~g~y~~g~~~~~~~~r~~~~~~~~rvg~g~~~~~~~~~~~~~~~~~~ 799 (801)
++|+++|.++++.|+|+++|+|.+|++|+|+||++..++|+|++++||||||||||+||+|||.+|||||++|
T Consensus 1 ~~id~~v~~~~~~C~C~~~f~i~ri~eGkYr~Gd~~~~~~vRil~~~VMVRVGGGW~tL~~fL~khDPCr~~~ 73 (73)
T smart00243 1 DKIDDEVKRIVEDCKCPTKFQVEKISEGKYRFGDSQILRLVRILRSTVMVRVGGGWETLDEYLLKHDPCRAKG 73 (73)
T ss_pred CcHHHHHHHHHhcCCCCCCcceEEecCCceEEcCCceEEEEEEeCCeEEEEECCcHHHHHHHHHhCCCcccCC
Confidence 4699999999999999999999999999999999988899999999999999999999999999999999997
No 6
>PF02187 GAS2: Growth-Arrest-Specific Protein 2 Domain; InterPro: IPR003108 The growth-arrest-specific protein 2 domain is found associated with the spectrin repeat, calponin homology domain and EF hand in many proteins. It is found among others in the growth arrest-specific protein 2 [].; GO: 0007050 cell cycle arrest; PDB: 1V5R_A.
Probab=99.97 E-value=7.4e-33 Score=209.06 Aligned_cols=72 Identities=64% Similarity=1.127 Sum_probs=62.3
Q ss_pred hhhhHHHHhhhcccccccccceeEcCCCccccCCcchhHHHhhhcCccceecCccHhhHHHhhhhcCCCCcc
Q psy13767 727 EKIHDEVKRLVQLCTCRQKFRVFQVGEGKYRFGDSQKLRLVRILRSTVMVRVGGGWVALDEFLIKNDPCRDN 798 (801)
Q Consensus 727 ~~i~~~v~~~~~~c~~~~~~~v~~~~~g~y~~g~~~~~~~~r~~~~~~~~rvg~g~~~~~~~~~~~~~~~~~ 798 (801)
++|+++|.++++.|+|+++|+|.++++|+|+||++..++|+|++++||||||||||+||+|||.+|||||++
T Consensus 1 ~~ld~~V~~iv~~C~C~~~f~v~rv~~GkYr~g~~~~l~~~ril~~~vMVRVGGGW~tL~~~L~khDPcR~~ 72 (73)
T PF02187_consen 1 NKLDDEVRRIVNQCSCPNKFPVERVSEGKYRFGDSKKLFFVRILRSHVMVRVGGGWDTLEEYLDKHDPCRCK 72 (73)
T ss_dssp -HHHHHHHHHHTS--SSS---EEEEETTEEE-ETTEEEEEEEETTTEEEEEETTEEEEHHHHHHHH-HHHHT
T ss_pred CcHHHHHHHHHhcCCCCCceeEEEeCCCceEeCCCceEEEEEEeCCEEEEEeCCcHHHHHHHhhccCCcccc
Confidence 369999999999999999999999999999999998899999999999999999999999999999999986
No 7
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.81 E-value=1.2e-17 Score=167.37 Aligned_cols=211 Identities=21% Similarity=0.412 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhcccChhhhhhHhh
Q psy13767 90 AKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVAD 169 (801)
Q Consensus 90 ~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~ 169 (801)
++.|...+..+..||.+++..|.+..+.+ |+..++.++++|+.|..++..+.+.++.+...|+.|....+
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~-d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~--------- 71 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGD-DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGH--------- 71 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcccCC-CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCC---------
Confidence 46799999999999999999998876644 99999999999999999999999999999999999997332
Q ss_pred hHHhHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy13767 170 KLQDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSEL 249 (801)
Q Consensus 170 ~~~~l~~r~~~l~~~~~~r~~~LW~~~~l~Ls~~~~~~~~i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~ 249 (801)
..+..|...++.|+.+|+.|+..+..|...|+.++..++.| ..+
T Consensus 72 -----------------------------------~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~-~~~ 115 (213)
T cd00176 72 -----------------------------------PDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFF-RDA 115 (213)
T ss_pred -----------------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 25678899999999999999999999999999999996545 555
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q psy13767 250 QSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSA 329 (801)
Q Consensus 250 ~~l~~Wl~~~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~~ 329 (801)
..+..||...+..+....+.+ +++.++.++..|+.|..++..+++.++.+...|..|....+++....+...+..|..+
T Consensus 116 ~~l~~wl~~~e~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~ 194 (213)
T cd00176 116 DDLEQWLEEKEAALASEDLGK-DLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNER 194 (213)
T ss_pred HHHHHHHHHHHHHhcCcccCC-CHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 569999999999998766544 8999999999999999999999999999999999999964444458999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy13767 330 WDNVTALFAKREENLIHA 347 (801)
Q Consensus 330 w~~l~~~~~~r~~~L~~~ 347 (801)
|..|...+..|...|+.+
T Consensus 195 ~~~l~~~~~~~~~~L~~~ 212 (213)
T cd00176 195 WEELLELAEERQKKLEEA 212 (213)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998764
No 8
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.78 E-value=1.8e-16 Score=158.94 Aligned_cols=211 Identities=22% Similarity=0.385 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHcCCCChhHHHH
Q psy13767 242 AEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKK 321 (801)
Q Consensus 242 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~ 321 (801)
++.|...+..+..||.+++..|.+..+++ |+..++.++++|+.|..++..+.+.++.+...|+.|+.. ++++...|..
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~-d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~-~~~~~~~i~~ 79 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGD-DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEE-GHPDAEEIQE 79 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcccCC-CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhc-CCCChHHHHH
Confidence 47899999999999999999998887665 999999999999999999999999999999999999995 5688999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCcHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy13767 322 HIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHETLQRKGEQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKK 401 (801)
Q Consensus 322 ~l~~l~~~w~~l~~~~~~r~~~L~~~l~~~~~~~~~~~~l~~~~ti~~l~~kr~~wl~~a~~~a~~~~~~L~~~~edlk~ 401 (801)
.++.|+.+|+.|+..+..|...|+.++..+..|+.+.. + ..||..+... |.
T Consensus 80 ~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~-l-------------~~wl~~~e~~-------l~-------- 130 (213)
T cd00176 80 RLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADD-L-------------EQWLEEKEAA-------LA-------- 130 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------------HHHHHHHHHH-------hc--------
Confidence 99999999999999999999999999977666665544 2 2577653210 10
Q ss_pred hccchHHHhhhhcCCcccHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHH
Q psy13767 402 ADCNADAVQTFVNSLPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVS 481 (801)
Q Consensus 402 ~l~~~e~~~r~~~~~~~d~~~l~~~l~~~~~~~~~l~~~~~~v~~l~~~~~~Ll~~~~p~~~~~i~~~~~~l~~rw~~l~ 481 (801)
..+.+.+++.++.++..|+.|..++...++.++.+...|..|+..++|.....+...++.+..+|..|.
T Consensus 131 -----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~ 199 (213)
T cd00176 131 -----------SEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELL 199 (213)
T ss_pred -----------CcccCCCHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 122233789999999999999999999999999999999999998888876789999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy13767 482 SWAKQREERLRNH 494 (801)
Q Consensus 482 ~~~~~r~~~L~~~ 494 (801)
..+..|...|+.+
T Consensus 200 ~~~~~~~~~L~~~ 212 (213)
T cd00176 200 ELAEERQKKLEEA 212 (213)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998864
No 9
>KOG4286|consensus
Probab=99.65 E-value=1.5e-12 Score=139.59 Aligned_cols=312 Identities=17% Similarity=0.244 Sum_probs=229.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhcccChhhhhhHhhh
Q psy13767 91 KQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADK 170 (801)
Q Consensus 91 ~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~ 170 (801)
+.|..++..+..|+-..... . ...-.|....+...+..+.+..+++++ ++...+..|+......
T Consensus 4 q~~~~~l~~f~~w~l~d~~~--~-~~~l~dt~~~~~~~~~~~~~~~e~~a~-----~v~~~~~kl~~~l~~~-------- 67 (966)
T KOG4286|consen 4 QQFPLDLEKFLAWLLQDATR--K-ERLLEDSKGVKELMKQWQDLQGEIEAH-----NLDENSQKILRSLEGS-------- 67 (966)
T ss_pred hhhhhhHHHHHHHHHhhhhh--h-HhhhhcccccHHHHHHHhccccccccc-----cCchHHHHHHHHhcCC--------
Confidence 66999999999999332211 1 011123334556667777777787773 2333344444311110
Q ss_pred HHhHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy13767 171 LQDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQ 250 (801)
Q Consensus 171 ~~~l~~r~~~l~~~~~~r~~~LW~~~~l~Ls~~~~~~~~i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~ 250 (801)
..+..+. -++.+|.+|.+.+..-+.+|+.+...|.++...++
T Consensus 68 ----------------------------------~~~~~l~----~mn~~w~~l~kks~~ir~~lea~~~~w~kl~~~l~ 109 (966)
T KOG4286|consen 68 ----------------------------------DDAVLLQ----LMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQ 109 (966)
T ss_pred ----------------------------------ccchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 0111122 38889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHcCC---------CC------
Q psy13767 251 SVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGE---------PD------ 315 (801)
Q Consensus 251 ~l~~Wl~~~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~---------~~------ 315 (801)
++.+|+.-+...|....|+|+|+..++.+..-|++|+.|+.+..+.|.+..+.|+.++...+- .+
T Consensus 110 el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k~~~~~s~~e~a~~fl~~~p~e~~e~~~~~~e~~p~~r 189 (966)
T KOG4286|consen 110 ELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEPVIMSTLETARIFLTEQPLEGLEKYQEPRELPPEER 189 (966)
T ss_pred HHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhcCCCcchhhcCCcccCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999988753210 00
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCcHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy13767 316 ----KPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHETLQRKGEQGTITALFAKREENLIHAMEKAMEFHET 391 (801)
Q Consensus 316 ----~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~l~~~~~~~~~~~~l~~~~ti~~l~~kr~~wl~~a~~~a~~~~~~ 391 (801)
+..+..+.+.++..|+.|...+......++.+++..+.++..+.+|+. -|++ |+.
T Consensus 190 ~q~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~-------------~l~~----ae~---- 248 (966)
T KOG4286|consen 190 AQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDL-------------KLRQ----AEV---- 248 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH-------------hhhH----HHh----
Confidence 123555567889999999999999999999998766666665555531 1111 111
Q ss_pred HHHhHHhhhhhccchHHHhhhhcCCcc-cHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhh-cCcchhhhHHHH
Q psy13767 392 LQQNRDDCKKADCNADAVQTFVNSLPE-DDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVK-SHPDGATVIKHW 469 (801)
Q Consensus 392 L~~~~edlk~~l~~~e~~~r~~~~~~~-d~~~l~~~l~~~~~~~~~l~~~~~~v~~l~~~~~~Ll~~-~~p~~~~~i~~~ 469 (801)
+.....|+++ -++.++..+++.+.|..++......|+.|+..+.+|+.. -+++ ......
T Consensus 249 -----------------~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~~~v~~vndla~ql~~~d~~ls--~~~~~~ 309 (966)
T KOG4286|consen 249 -----------------IKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLARQLTTLDIQLS--PYNLST 309 (966)
T ss_pred -----------------hhhccccHHHHHHhHHHHHHHHHHHHHhhcchHhhchhhHHHHHHHhhhcccCCC--hhhHhh
Confidence 1101123332 248888999999999999999999999999999998753 3444 346678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 470 ITIIQSRWEEVSSWAKQREERLRNHLR 496 (801)
Q Consensus 470 ~~~l~~rw~~l~~~~~~r~~~L~~~~~ 496 (801)
++.++.||..|...+..|...|..+-.
T Consensus 310 le~~n~rwk~Lq~SV~~rl~qlrna~~ 336 (966)
T KOG4286|consen 310 LEDLNTRWKLLQVSVPDRLTQLRNAHR 336 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998853
No 10
>KOG4286|consensus
Probab=99.64 E-value=1.6e-13 Score=147.07 Aligned_cols=299 Identities=16% Similarity=0.216 Sum_probs=235.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 17 AQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDK 96 (801)
Q Consensus 17 ~~l~~~~~l~~el~~~~~~v~~l~~~g~~L~~~~~~~~~~~i~~~l~~L~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~ 96 (801)
...+..+.+..++++ ..+...+..|+......+ ..+.-. .++.+|..|...+..-+.+|+.+...|......
T Consensus 36 ~~~~~~~~~~~e~~a-----~~v~~~~~kl~~~l~~~~-~~~~l~--~mn~~w~~l~kks~~ir~~lea~~~~w~kl~~~ 107 (966)
T KOG4286|consen 36 ELMKQWQDLQGEIEA-----HNLDENSQKILRSLEGSD-DAVLLQ--LMNFKWSELRKKSLNIRSHLEASSDQWKRLHLS 107 (966)
T ss_pred HHHHHHhcccccccc-----ccCchHHHHHHHHhcCCc-cchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444555556665 334445555655432221 222222 389999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhcccChhhhhhHhhhHHh-HH
Q psy13767 97 LTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQD-TA 175 (801)
Q Consensus 97 ~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~~~~-l~ 175 (801)
+.++..||+.+...|....|+|.|+..|+.+-.-|++|+.||.++.+.|-+..+.|+.++...+-......++.-+. -.
T Consensus 108 l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k~~~~~s~~e~a~~fl~~~p~e~~e~~~~~~e~~p~ 187 (966)
T KOG4286|consen 108 LQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEPVIMSTLETARIFLTEQPLEGLEKYQEPRELPPE 187 (966)
T ss_pred HHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhcCCCcchhhcCCcccCCHH
Confidence 99999999999999998889999999999999999999999999999999999999998863221111111110000 00
Q ss_pred HHHHHHHHHHhhhhhhhhhhhccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy13767 176 DRYGALVEASDNLGQYAFLYNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMAT 255 (801)
Q Consensus 176 ~r~~~l~~~~~~r~~~LW~~~~l~Ls~~~~~~~~i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~W 255 (801)
.|-.+ ....+......++..|+.|...+....+..+.++...+.....++++..-
T Consensus 188 ~r~q~-------------------------~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~ 242 (966)
T KOG4286|consen 188 ERAQN-------------------------VTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLK 242 (966)
T ss_pred HHHHH-------------------------HHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000 12334555688999999999999999999999999889999999999999
Q ss_pred HHHHHHhhhcCCCCCC-ChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHH
Q psy13767 256 LRDLQDNLNSQEPPAV-EPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVT 334 (801)
Q Consensus 256 l~~~e~~l~~~~~~~~-d~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~~w~~l~ 334 (801)
|...|....+..+++. -++.++..+++.+.|..+|......|+.+++.+.+|... .---+......+++||.||.-|.
T Consensus 243 l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~~~v~~vndla~ql~~~-d~~ls~~~~~~le~~n~rwk~Lq 321 (966)
T KOG4286|consen 243 LRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLARQLTTL-DIQLSPYNLSTLEDLNTRWKLLQ 321 (966)
T ss_pred hhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchHhhchhhHHHHHHHhhhc-ccCCChhhHhhHHHHHHHHHHHH
Confidence 9999999999988875 478888899999999999999999999999999999984 33346667899999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy13767 335 ALFAKREENLIHAME 349 (801)
Q Consensus 335 ~~~~~r~~~L~~~l~ 349 (801)
..+..|..+|..+..
T Consensus 322 ~SV~~rl~qlrna~~ 336 (966)
T KOG4286|consen 322 VSVPDRLTQLRNAHR 336 (966)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998864
No 11
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=99.19 E-value=3.3e-10 Score=99.10 Aligned_cols=103 Identities=23% Similarity=0.482 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHcCCCChhHHHH
Q psy13767 242 AEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKK 321 (801)
Q Consensus 242 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~ 321 (801)
++.|...++++..||..++..|....+ +.+++.++.++.+|+.|..++..+++.++.|...|..|+. .++++++.|..
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~-~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~-~~~~~~~~i~~ 80 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEP-GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLID-SGPEDSDEIQE 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTH-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-cCCCcHHHHHH
Confidence 589999999999999999999966554 7899999999999999999999999999999999999976 57889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 322 HIEDLDSAWDNVTALFAKREENLIH 346 (801)
Q Consensus 322 ~l~~l~~~w~~l~~~~~~r~~~L~~ 346 (801)
.+..|+.+|+.|...+..|...|++
T Consensus 81 ~~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 81 KLEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999874
No 12
>smart00150 SPEC Spectrin repeats.
Probab=99.19 E-value=2.4e-10 Score=99.17 Aligned_cols=100 Identities=21% Similarity=0.429 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHcCCCChhHHHHHH
Q psy13767 244 KFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHI 323 (801)
Q Consensus 244 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l 323 (801)
.|...+.++..||.+++..+.... ++.|++.++.++++|+.|+.++..+++.++.+...|..|+.. ++++++.|..++
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~~~-~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~-~~~~~~~i~~~~ 79 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLASED-LGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEE-GHPDAEEIEERL 79 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCcHHHHHHHH
Confidence 689999999999999998887654 668999999999999999999999999999999999999994 888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy13767 324 EDLDSAWDNVTALFAKREENLI 345 (801)
Q Consensus 324 ~~l~~~w~~l~~~~~~r~~~L~ 345 (801)
+.|+.+|+.|+..+..|...|+
T Consensus 80 ~~l~~~w~~l~~~~~~r~~~L~ 101 (101)
T smart00150 80 EELNERWEELKELAEERRQKLE 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998773
No 13
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.09 E-value=2.3e-10 Score=94.61 Aligned_cols=67 Identities=10% Similarity=0.157 Sum_probs=61.7
Q ss_pred HHHHHHHHHhccccc-CCCCCcCHHHHHHHHHh-cCCCCCH-HHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 647 HKKSRLTDLFRKMDK-NNDGLIPREDFVDGIIK-TKFETSK-LEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~-d~~g~i~~~e~~~~l~~-~g~~~~~-~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
..+..+..+|+.||+ +++|+|+.+||+..|.. +|..++. .+++.++..+|.| +||.|+|+||+..|.
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d-~DG~I~F~EF~~l~~ 74 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVN-QDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCC-CCCCCcHHHHHHHHH
Confidence 455678899999999 99999999999999998 8887888 8999999999999 999999999999874
No 14
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.07 E-value=4.9e-10 Score=101.95 Aligned_cols=82 Identities=21% Similarity=0.370 Sum_probs=70.2
Q ss_pred cCCHHHHHHHHHHHHh---HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHH
Q psy13767 631 NFSWDDWRKRFLRFMN---HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWK 707 (801)
Q Consensus 631 ~f~f~~~~~~~l~~~~---~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ 707 (801)
..+|..|.. ++.... ....++..+|+.||+|+||+|+..+++..+..+|..++++|++.++..+|.| ++|.|+|+
T Consensus 71 ~idf~~Fl~-~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d-~dG~i~~~ 148 (160)
T COG5126 71 TVDFPEFLT-VMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDED-GDGEIDYE 148 (160)
T ss_pred ccCHHHHHH-HHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCC-CCceEeHH
Confidence 456665444 222221 4568999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhC
Q psy13767 708 EFIAALR 714 (801)
Q Consensus 708 ef~~~~~ 714 (801)
+|+..+.
T Consensus 149 eF~~~~~ 155 (160)
T COG5126 149 EFKKLIK 155 (160)
T ss_pred HHHHHHh
Confidence 9999774
No 15
>smart00150 SPEC Spectrin repeats.
Probab=99.06 E-value=1.6e-09 Score=93.98 Aligned_cols=99 Identities=21% Similarity=0.408 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhcccChhhhhhHhhhH
Q psy13767 92 QFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKL 171 (801)
Q Consensus 92 ~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~~ 171 (801)
.|...+..+..||.+++..+.. .++|.|++.++.++++|+.|..+|..+++.+..+...|+.|+.. +|+++..|...+
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~-~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~-~~~~~~~i~~~~ 79 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLAS-EDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEE-GHPDAEEIEERL 79 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCcHHHHHHHH
Confidence 4899999999999999977755 56789999999999999999999999999999999999999984 677889999999
Q ss_pred HhHHHHHHHHHHHHhhhhhhh
Q psy13767 172 QDTADRYGALVEASDNLGQYA 192 (801)
Q Consensus 172 ~~l~~r~~~l~~~~~~r~~~L 192 (801)
..|+.+|+.|...+.+|...|
T Consensus 80 ~~l~~~w~~l~~~~~~r~~~L 100 (101)
T smart00150 80 EELNERWEELKELAEERRQKL 100 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999988765
No 16
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=99.04 E-value=2.5e-09 Score=93.41 Aligned_cols=101 Identities=27% Similarity=0.518 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhcccChhhhhhHhh
Q psy13767 90 AKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVAD 169 (801)
Q Consensus 90 ~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~ 169 (801)
+++|...++++..||..++..|...+ .|.++..++.++++|+.|..+|..+++.++.|...|..|.. .+|..+..|..
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~-~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~-~~~~~~~~i~~ 80 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSE-PGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLID-SGPEDSDEIQE 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCT-HSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-cCCCcHHHHHH
Confidence 57899999999999999999995544 49999999999999999999999999999999999999965 77889999999
Q ss_pred hHHhHHHHHHHHHHHHhhhhhhh
Q psy13767 170 KLQDTADRYGALVEASDNLGQYA 192 (801)
Q Consensus 170 ~~~~l~~r~~~l~~~~~~r~~~L 192 (801)
.+..|+.+|..|...+..|...|
T Consensus 81 ~~~~l~~~w~~l~~~~~~r~~~L 103 (105)
T PF00435_consen 81 KLEELNQRWEALCELVEERRQKL 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999887665
No 17
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.02 E-value=9e-10 Score=91.40 Aligned_cols=67 Identities=19% Similarity=0.323 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcccc-cCCCC-CcCHHHHHHHHHh-----cCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 647 HKKSRLTDLFRKMD-KNNDG-LIPREDFVDGIIK-----TKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 647 ~~~~~~~~~F~~~D-~d~~g-~i~~~e~~~~l~~-----~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
..+..++++|+.|| +|||| .|+.+||+..|.. +|...++.++..+++.+|.| ++|.|+|++|+..+.
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n-~dG~v~f~eF~~li~ 78 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSD-GDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCC-CCCcCcHHHHHHHHH
Confidence 45567899999998 89999 5999999999999 89999999999999999999 999999999999874
No 18
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.02 E-value=5.1e-10 Score=88.47 Aligned_cols=62 Identities=31% Similarity=0.543 Sum_probs=54.7
Q ss_pred HHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHH----HHHHHHhCCCCCCCcccHHHHHHHh
Q psy13767 651 RLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEM----GAVADMFDHDYNPGLIDWKEFIAAL 713 (801)
Q Consensus 651 ~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~----~~~~~~~d~d~~~g~i~~~ef~~~~ 713 (801)
+++.+|+.||+|++|.|+.+||..++..++...+..++ ..++..+|.| ++|.|+|+||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d-~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTD-GDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTT-SSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC-CcCCCcHHHHhccC
Confidence 47889999999999999999999999999977665554 4558999999 99999999999875
No 19
>KOG0027|consensus
Probab=98.98 E-value=2.8e-09 Score=99.68 Aligned_cols=72 Identities=25% Similarity=0.357 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhCCCccc
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRPDWEE 719 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~~~~~~ 719 (801)
....+++.+|..||+|++|.|+..||..+++.+|..++..++..++..+|.| |+|.|+|++|+..|.+....
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~d-g~g~I~~~eF~~l~~~~~~~ 76 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLD-GDGTIDFEEFLDLMEKLGEE 76 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC-CCCeEcHHHHHHHHHhhhcc
Confidence 3457899999999999999999999999999999999999999999999999 99999999999999866554
No 20
>KOG0027|consensus
Probab=98.97 E-value=1.4e-09 Score=101.61 Aligned_cols=84 Identities=17% Similarity=0.353 Sum_probs=71.4
Q ss_pred cCCHHHHHHHHHHHHhH------HHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcc
Q psy13767 631 NFSWDDWRKRFLRFMNH------KKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLI 704 (801)
Q Consensus 631 ~f~f~~~~~~~l~~~~~------~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i 704 (801)
.++|.+|...+...... ....++++|+.||+||||.|+..||+..|..+|.+.+..++..++..+|.| |||.|
T Consensus 60 ~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d-~dg~i 138 (151)
T KOG0027|consen 60 TIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVD-GDGKV 138 (151)
T ss_pred eEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCC-CCCeE
Confidence 46777665533322221 245899999999999999999999999999999999999999999999999 99999
Q ss_pred cHHHHHHHhCC
Q psy13767 705 DWKEFIAALRP 715 (801)
Q Consensus 705 ~~~ef~~~~~~ 715 (801)
+|++|+..|..
T Consensus 139 ~f~ef~~~m~~ 149 (151)
T KOG0027|consen 139 NFEEFVKMMSG 149 (151)
T ss_pred eHHHHHHHHhc
Confidence 99999999854
No 21
>KOG0028|consensus
Probab=98.94 E-value=7.1e-09 Score=91.62 Aligned_cols=93 Identities=18% Similarity=0.343 Sum_probs=80.0
Q ss_pred HHHHHHH--hhcCCHHHHHHHHHHHHh--HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCC
Q psy13767 622 YLIELEK--VKNFSWDDWRKRFLRFMN--HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDH 697 (801)
Q Consensus 622 ~l~e~~~--~~~f~f~~~~~~~l~~~~--~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~ 697 (801)
.+.++.+ ...+.|+.|+..+..++. +.+.++..+|+.||.|++|.|+..+|+.++..+|..++++|+.++++.+|.
T Consensus 74 ll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~ 153 (172)
T KOG0028|consen 74 LLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADR 153 (172)
T ss_pred HHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcc
Confidence 3344444 335788888776666665 567899999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHhCC
Q psy13767 698 DYNPGLIDWKEFIAALRP 715 (801)
Q Consensus 698 d~~~g~i~~~ef~~~~~~ 715 (801)
| ++|.|+-+||+..|+.
T Consensus 154 d-~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 154 D-GDGEVNEEEFIRIMKK 170 (172)
T ss_pred c-ccccccHHHHHHHHhc
Confidence 9 9999999999999853
No 22
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.91 E-value=2.9e-09 Score=97.00 Aligned_cols=129 Identities=21% Similarity=0.393 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhCCCcccCCCCCch
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRPDWEEKKPNTES 726 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 726 (801)
+.+.+++++|..||+|++|.|++.+|...++.+|+.++..++..+++.+|. |+|.|+|.+|+.+|...... ....
T Consensus 17 ~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~--~~~~idf~~Fl~~ms~~~~~---~~~~ 91 (160)
T COG5126 17 EQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA--GNETVDFPEFLTVMSVKLKR---GDKE 91 (160)
T ss_pred HHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC--CCCccCHHHHHHHHHHHhcc---CCcH
Confidence 677899999999999999999999999999999999999999999999998 78999999999999644331 1123
Q ss_pred hhhhHHHHhhhcccccccccceeEcCCCccccCCcchhHHHhhhc---------C--ccceecCccHhhHHHhhh--hcC
Q psy13767 727 EKIHDEVKRLVQLCTCRQKFRVFQVGEGKYRFGDSQKLRLVRILR---------S--TVMVRVGGGWVALDEFLI--KND 793 (801)
Q Consensus 727 ~~i~~~v~~~~~~c~~~~~~~v~~~~~g~y~~g~~~~~~~~r~~~---------~--~~~~rvg~g~~~~~~~~~--~~~ 793 (801)
++|...+..+- +-++|++.+|+- +..+..+. . ..++-.|.|-.+.++|.. ..+
T Consensus 92 Eel~~aF~~fD------------~d~dG~Is~~eL--~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~ 157 (160)
T COG5126 92 EELREAFKLFD------------KDHDGYISIGEL--RRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDS 157 (160)
T ss_pred HHHHHHHHHhC------------CCCCceecHHHH--HHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhcc
Confidence 34444444221 225677777764 33332221 1 023335789999999876 444
Q ss_pred C
Q psy13767 794 P 794 (801)
Q Consensus 794 ~ 794 (801)
|
T Consensus 158 ~ 158 (160)
T COG5126 158 P 158 (160)
T ss_pred C
Confidence 4
No 23
>KOG0028|consensus
Probab=98.87 E-value=1.7e-09 Score=95.46 Aligned_cols=74 Identities=20% Similarity=0.333 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhCCCcccCC
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRPDWEEKK 721 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~~~~~~~~ 721 (801)
....++..+|..||.+++|+|+.+||..+++++|+.+...||.+++..+|++ |.|.|+|++|...|+.......
T Consensus 30 ~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~-~~g~i~fe~f~~~mt~k~~e~d 103 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKE-GSGKITFEDFRRVMTVKLGERD 103 (172)
T ss_pred HHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhc-cCceechHHHHHHHHHHHhccC
Confidence 4567899999999999999999999999999999999999999999999999 9999999999999876665444
No 24
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.86 E-value=6.5e-09 Score=87.73 Aligned_cols=67 Identities=12% Similarity=0.304 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcccc-cCCCC-CcCHHHHHHHHHh-c----CCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 647 HKKSRLTDLFRKMD-KNNDG-LIPREDFVDGIIK-T----KFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 647 ~~~~~~~~~F~~~D-~d~~g-~i~~~e~~~~l~~-~----g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
..+..+.++|..|| +|||| +|+..||+..+.. . +...+..++..++..+|.| ++|.|+|+||+..|.
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n-~dG~Idf~EF~~l~~ 80 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSN-KDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCC-CCCCCCHHHHHHHHH
Confidence 45677889999999 78998 5999999999976 2 3455788999999999999 999999999999884
No 25
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.81 E-value=1.2e-08 Score=86.71 Aligned_cols=66 Identities=14% Similarity=0.315 Sum_probs=59.4
Q ss_pred HHHHHHHHhccccc-CC-CCCcCHHHHHHHHHh-----cCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 648 KKSRLTDLFRKMDK-NN-DGLIPREDFVDGIIK-----TKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 648 ~~~~~~~~F~~~D~-d~-~g~i~~~e~~~~l~~-----~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
....+..+|..||. || +|.|+..||+.+|.. +|..++..++..++..+|.| ++|.|+|++|+..+.
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~-~dg~I~f~eF~~l~~ 78 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQN-RDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCC-CCCcCcHHHHHHHHH
Confidence 45678899999997 97 699999999999986 57788999999999999999 999999999998873
No 26
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.80 E-value=1.6e-08 Score=85.53 Aligned_cols=67 Identities=15% Similarity=0.326 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcccc-cCCCC-CcCHHHHHHHHHh-cC----CCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 647 HKKSRLTDLFRKMD-KNNDG-LIPREDFVDGIIK-TK----FETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 647 ~~~~~~~~~F~~~D-~d~~g-~i~~~e~~~~l~~-~g----~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
.....++++|..|| +|++| .|+..||+..|.. +| ..++..++..++..+|.| ++|.|+|++|+..+.
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d-~~G~I~f~eF~~l~~ 79 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDEN-GDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCC-CCCcCcHHHHHHHHH
Confidence 34567899999997 99999 5999999999975 44 456889999999999999 999999999999874
No 27
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.79 E-value=1.8e-08 Score=83.71 Aligned_cols=67 Identities=12% Similarity=0.281 Sum_probs=60.0
Q ss_pred HHHHHHHHHhccccc-CC-CCCcCHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 647 HKKSRLTDLFRKMDK-NN-DGLIPREDFVDGII---KTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~-d~-~g~i~~~e~~~~l~---~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
.....+..+|..||. || +|.|+.+||+..+. .+|.+.+..++.++++.+|.| ++|.|+|.||+..|.
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d-~dG~Idf~EFv~lm~ 78 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRN-KDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCCCCcHHHHHHHHH
Confidence 445667889999998 77 89999999999996 479999999999999999999 999999999998773
No 28
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.69 E-value=3.8e-08 Score=78.01 Aligned_cols=59 Identities=27% Similarity=0.472 Sum_probs=54.5
Q ss_pred HHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 653 TDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 653 ~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
+.+|..+|+|++|.|+.+|+...+...|. +..++..++..+|.+ ++|.|+|++|+..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~-~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTD-KDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCC-CCCcCCHHHHHHHHH
Confidence 56899999999999999999999998875 788899999999999 999999999999873
No 29
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.68 E-value=5.7e-08 Score=82.94 Aligned_cols=65 Identities=26% Similarity=0.443 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
+....+..+|..||+|++|.|+.+++..++...| .+..++..++..+|.+ ++|.|+|++|+.++.
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~-~~g~I~~~eF~~~~~ 71 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADID-NDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCC-CCCCcCHHHHHHHHH
Confidence 4567899999999999999999999999999876 5788999999999999 999999999999774
No 30
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.63 E-value=8.2e-08 Score=80.63 Aligned_cols=67 Identities=12% Similarity=0.270 Sum_probs=59.0
Q ss_pred HHHHHHHHHhccccc--CCCCCcCHHHHHHHHHh-cCCCC----CHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 647 HKKSRLTDLFRKMDK--NNDGLIPREDFVDGIIK-TKFET----SKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~--d~~g~i~~~e~~~~l~~-~g~~~----~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
..+..++.+|..||+ |++|.|+.++|..++.. +|..+ +..++..++..+|.+ ++|.|+|++|+..+.
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~-~~g~I~f~eF~~~~~ 78 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVN-KDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccC-CCCcCcHHHHHHHHH
Confidence 455678899999999 89999999999999975 56444 588999999999999 999999999999884
No 31
>PF14658 EF-hand_9: EF-hand domain
Probab=98.61 E-value=7.6e-08 Score=72.84 Aligned_cols=59 Identities=19% Similarity=0.416 Sum_probs=56.5
Q ss_pred HhcccccCCCCCcCHHHHHHHHHhcCC-CCCHHHHHHHHHHhCCCCCC-CcccHHHHHHHhC
Q psy13767 655 LFRKMDKNNDGLIPREDFVDGIIKTKF-ETSKLEMGAVADMFDHDYNP-GLIDWKEFIAALR 714 (801)
Q Consensus 655 ~F~~~D~d~~g~i~~~e~~~~l~~~g~-~~~~~e~~~~~~~~d~d~~~-g~i~~~ef~~~~~ 714 (801)
+|..||+++.|.|..+.++..|+++|. .+++.+++.+...+|.+ |. |.|+|+.|+.+|+
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~-g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPE-GRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCC-CCCceEeHHHHHHHHH
Confidence 699999999999999999999999998 88999999999999999 88 9999999999984
No 32
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.58 E-value=1.8e-07 Score=77.80 Aligned_cols=66 Identities=18% Similarity=0.358 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcc-cccCCCC-CcCHHHHHHHHHhc-----CCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHh
Q psy13767 647 HKKSRLTDLFRK-MDKNNDG-LIPREDFVDGIIKT-----KFETSKLEMGAVADMFDHDYNPGLIDWKEFIAAL 713 (801)
Q Consensus 647 ~~~~~~~~~F~~-~D~d~~g-~i~~~e~~~~l~~~-----g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~ 713 (801)
..+..+..+|+. +|+||+| +|+.+||...+... +...++.++..++..+|.| +||.|+|+||+..|
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d-~DG~I~f~EF~~l~ 78 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLN-SDGQLDFQEFLNLI 78 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCC-CCCcCcHHHHHHHH
Confidence 345677889999 8899986 99999999999865 4456778999999999999 99999999999877
No 33
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.55 E-value=1.4e-07 Score=70.87 Aligned_cols=50 Identities=34% Similarity=0.563 Sum_probs=47.6
Q ss_pred CCCCcCHHHHHHHHHhcCCC-CCHHHHHHHHHHhCCCCCCCcccHHHHHHHh
Q psy13767 663 NDGLIPREDFVDGIIKTKFE-TSKLEMGAVADMFDHDYNPGLIDWKEFIAAL 713 (801)
Q Consensus 663 ~~g~i~~~e~~~~l~~~g~~-~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~ 713 (801)
.+|.|+.++|..+|..+|.+ +++.++..++..+|.| ++|.|+|+||+..+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~-~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTD-GDGYISFDEFISMM 51 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTS-SSSSEEHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccC-CCCCCCHHHHHHHH
Confidence 36999999999999888999 9999999999999999 99999999999987
No 34
>PTZ00184 calmodulin; Provisional
Probab=98.49 E-value=2.9e-07 Score=86.14 Aligned_cols=69 Identities=20% Similarity=0.381 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhCCC
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRPD 716 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~~~ 716 (801)
.....+...|..+|.|++|.|+..+|...+..+|..++..++..++..+|.+ ++|.|+|++|+..+...
T Consensus 8 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD-GNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcC-CCCcCcHHHHHHHHHHh
Confidence 3446788999999999999999999999999999888888999999999999 99999999999988643
No 35
>KOG0030|consensus
Probab=98.48 E-value=4.7e-07 Score=78.22 Aligned_cols=81 Identities=14% Similarity=0.295 Sum_probs=64.6
Q ss_pred hcCCHHHHHHHHHHHHhH-----HHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcc
Q psy13767 630 KNFSWDDWRKRFLRFMNH-----KKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLI 704 (801)
Q Consensus 630 ~~f~f~~~~~~~l~~~~~-----~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i 704 (801)
+..+|+.|.. +...++. .-..+.+.++.||++|+|.|+..||+..|..+|..++++|++.++.. -.| .+|.|
T Consensus 64 ~rl~FE~fLp-m~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag-~eD-~nG~i 140 (152)
T KOG0030|consen 64 KRLDFEEFLP-MYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAG-QED-SNGCI 140 (152)
T ss_pred hhhhHHHHHH-HHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcc-ccc-cCCcC
Confidence 3457777665 3334432 22567788999999999999999999999999999999999999864 335 66999
Q ss_pred cHHHHHHHh
Q psy13767 705 DWKEFIAAL 713 (801)
Q Consensus 705 ~~~ef~~~~ 713 (801)
+|++|+..+
T Consensus 141 ~YE~fVk~i 149 (152)
T KOG0030|consen 141 NYEAFVKHI 149 (152)
T ss_pred cHHHHHHHH
Confidence 999999865
No 36
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.44 E-value=5.3e-07 Score=69.90 Aligned_cols=61 Identities=28% Similarity=0.477 Sum_probs=57.6
Q ss_pred HHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHh
Q psy13767 652 LTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAAL 713 (801)
Q Consensus 652 ~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~ 713 (801)
+..+|..+|.|++|.|+..++...+..+|.+.+...+..++..+|.+ ++|.|+|++|+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKD-GDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCeEeHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999 99999999999865
No 37
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.44 E-value=4.9e-07 Score=78.82 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHh
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAAL 713 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~ 713 (801)
..+..+..+|..+|+|+||.|+.+||.... ....+..+..++..+|.| +||.|+|+||...+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n-~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLD-KDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCC-CCCCCCHHHHHHHH
Confidence 345678899999999999999999999876 334566789999999999 99999999999988
No 38
>PTZ00183 centrin; Provisional
Probab=98.44 E-value=4.7e-07 Score=85.73 Aligned_cols=68 Identities=24% Similarity=0.432 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhCC
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRP 715 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~~ 715 (801)
....++..+|..+|.|++|.|+..||..++..+|...+..++..++..+|.+ ++|.|+|.+|+.++..
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~-~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKD-GSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCcEeHHHHHHHHHH
Confidence 4556788999999999999999999999999999888999999999999999 9999999999998753
No 39
>PTZ00183 centrin; Provisional
Probab=98.41 E-value=1.1e-06 Score=83.16 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=62.3
Q ss_pred HHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhCC
Q psy13767 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRP 715 (801)
Q Consensus 649 ~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~~ 715 (801)
...+..+|+.+|+|++|.|+..||...+...|..++..++..++..+|.| ++|.|+|++|+.++..
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRN-GDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCcCcHHHHHHHHhc
Confidence 35788999999999999999999999999999999999999999999999 9999999999999864
No 40
>PTZ00184 calmodulin; Provisional
Probab=98.38 E-value=1.4e-06 Score=81.60 Aligned_cols=83 Identities=16% Similarity=0.358 Sum_probs=68.7
Q ss_pred cCCHHHHHHHHHHHHh--HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHH
Q psy13767 631 NFSWDDWRKRFLRFMN--HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKE 708 (801)
Q Consensus 631 ~f~f~~~~~~~l~~~~--~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~e 708 (801)
.+++.+|...+..++. .....+..+|+.+|.|++|.|+..+|..++...|..++..++..++..+|.+ ++|.|+|+|
T Consensus 63 ~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~e 141 (149)
T PTZ00184 63 TIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD-GDGQINYEE 141 (149)
T ss_pred cCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCC-CCCcCcHHH
Confidence 3566665542222221 3345788999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHhC
Q psy13767 709 FIAALR 714 (801)
Q Consensus 709 f~~~~~ 714 (801)
|+..+.
T Consensus 142 f~~~~~ 147 (149)
T PTZ00184 142 FVKMMM 147 (149)
T ss_pred HHHHHh
Confidence 998874
No 41
>KOG0037|consensus
Probab=98.32 E-value=2.8e-06 Score=79.98 Aligned_cols=65 Identities=18% Similarity=0.366 Sum_probs=60.9
Q ss_pred HHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHh
Q psy13767 648 KKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAAL 713 (801)
Q Consensus 648 ~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~ 713 (801)
.++.-+.+|+.||+|++|+|+..||..+|..+|+.+++.-.+.++++||.- ++|.|+|+.|+..+
T Consensus 122 ~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~-~~g~i~FD~FI~cc 186 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRF-GGGRIDFDDFIQCC 186 (221)
T ss_pred HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccc-cCCceeHHHHHHHH
Confidence 345678899999999999999999999999999999999999999999998 89999999999987
No 42
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.28 E-value=2e-06 Score=71.73 Aligned_cols=67 Identities=9% Similarity=0.234 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcccccC--CCCCcCHHHHHHHHH-hcCCCCC----HHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 647 HKKSRLTDLFRKMDKN--NDGLIPREDFVDGII-KTKFETS----KLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d--~~g~i~~~e~~~~l~-~~g~~~~----~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
..+..+...|..++.. ++|.|+.+||+..|. .+|..++ ..+++.++..+|.| ++|.|+|++|+..+.
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d-~dG~I~f~eF~~~~~ 78 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTN-QDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCC-CCCcCcHHHHHHHHH
Confidence 3456677889999865 479999999999996 5666666 89999999999999 999999999999884
No 43
>KOG0031|consensus
Probab=98.20 E-value=7.7e-06 Score=72.12 Aligned_cols=82 Identities=15% Similarity=0.219 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHh--HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHH
Q psy13767 632 FSWDDWRKRFLRFMN--HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEF 709 (801)
Q Consensus 632 f~f~~~~~~~l~~~~--~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef 709 (801)
++|.-|.-.|=..+. +....+..+|+.||.+++|.|+.+.|+..|...|...+++||+.++..+-.| ..|.|+|..|
T Consensus 81 INft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d-~~G~~dy~~~ 159 (171)
T KOG0031|consen 81 INFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPID-KKGNFDYKAF 159 (171)
T ss_pred eeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcc-cCCceeHHHH
Confidence 455443333333333 5567899999999999999999999999999999999999999999999998 8899999999
Q ss_pred HHHhC
Q psy13767 710 IAALR 714 (801)
Q Consensus 710 ~~~~~ 714 (801)
+.++.
T Consensus 160 ~~~it 164 (171)
T KOG0031|consen 160 TYIIT 164 (171)
T ss_pred HHHHH
Confidence 99985
No 44
>KOG0031|consensus
Probab=98.12 E-value=1.1e-05 Score=71.19 Aligned_cols=65 Identities=26% Similarity=0.436 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhCCC
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRPD 716 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~~~ 716 (801)
..+.+++++|..+|.|+||.|++++|+..+.++|...++++++.++.+ ++|.|+|--|+.++...
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E-----a~gPINft~FLTmfGek 93 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE-----APGPINFTVFLTMFGEK 93 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh-----CCCCeeHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999987 88999999999987543
No 45
>KOG0034|consensus
Probab=98.12 E-value=1e-05 Score=76.87 Aligned_cols=84 Identities=20% Similarity=0.348 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHh--HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhc-CCCCC--HHH----HHHHHHHhCCCCCCC
Q psy13767 632 FSWDDWRKRFLRFMN--HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKT-KFETS--KLE----MGAVADMFDHDYNPG 702 (801)
Q Consensus 632 f~f~~~~~~~l~~~~--~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~-g~~~~--~~e----~~~~~~~~d~d~~~g 702 (801)
++|.+|...+--+.. ....++.=+|+.+|.|++|.|+++|+...+..+ |...+ .+. ++..+.++|.| +||
T Consensus 84 v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d-~DG 162 (187)
T KOG0034|consen 84 VDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTD-GDG 162 (187)
T ss_pred cCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCC-CCC
Confidence 667665552222222 333578889999999999999999999999865 43344 333 45566789999 999
Q ss_pred cccHHHHHHHhCCC
Q psy13767 703 LIDWKEFIAALRPD 716 (801)
Q Consensus 703 ~i~~~ef~~~~~~~ 716 (801)
.|+|+||..++...
T Consensus 163 ~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 163 KISFEEFCKVVEKQ 176 (187)
T ss_pred cCcHHHHHHHHHcC
Confidence 99999999998644
No 46
>KOG0044|consensus
Probab=98.03 E-value=1.9e-05 Score=75.02 Aligned_cols=71 Identities=23% Similarity=0.348 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHh----cCC------CCCH-HHHHHHHHHhCCCCCCCcccHHHHHHHhCC
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIK----TKF------ETSK-LEMGAVADMFDHDYNPGLIDWKEFIAALRP 715 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~----~g~------~~~~-~e~~~~~~~~d~d~~~g~i~~~ef~~~~~~ 715 (801)
.....+..+|+.+|.||||.|++.|+..++.+ .|. ..+. .-+..++..+|.| +||.|+++||+.++..
T Consensus 97 t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n-~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 97 TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKN-KDGKLTLEEFIEGCKA 175 (193)
T ss_pred cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCC-CCCcccHHHHHHHhhh
Confidence 44577889999999999999999999887654 343 2223 3388899999999 9999999999998854
Q ss_pred Ccc
Q psy13767 716 DWE 718 (801)
Q Consensus 716 ~~~ 718 (801)
.++
T Consensus 176 d~~ 178 (193)
T KOG0044|consen 176 DPS 178 (193)
T ss_pred CHH
Confidence 443
No 47
>KOG0036|consensus
Probab=98.02 E-value=2.3e-05 Score=80.42 Aligned_cols=73 Identities=22% Similarity=0.360 Sum_probs=69.3
Q ss_pred HHHHHhHHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 641 FLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 641 ~l~~~~~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
|.+|+.+.+.++..+|..+|.+.||.|+..|+...+..+|.+++.++..++++.+|++ |++.|+++||-..+.
T Consensus 73 F~~Y~~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~-g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 73 FKRYLDNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKD-GKATIDLEEWRDHLL 145 (463)
T ss_pred HHHHHHHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccC-CCeeeccHHHHhhhh
Confidence 6668888999999999999999999999999999999999999999999999999999 999999999998763
No 48
>KOG0044|consensus
Probab=98.01 E-value=3.2e-05 Score=73.55 Aligned_cols=67 Identities=24% Similarity=0.324 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
+...-...+|+.||+|+||.|+..||..++..+--....+-+...+..+|.| |+|+|+++|++.++.
T Consensus 61 d~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~d-gdG~It~~Eml~iv~ 127 (193)
T KOG0044|consen 61 DASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLD-GDGYITKEEMLKIVQ 127 (193)
T ss_pred CHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCC-CCceEcHHHHHHHHH
Confidence 4445567789999999999999999999987665555566688899999999 999999999999764
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.00 E-value=0.12 Score=65.11 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy13767 465 VIKHWITIIQSRWEEVSSWAKQREERLRNHLRSLQ 499 (801)
Q Consensus 465 ~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~~~~ 499 (801)
.+...+..+..+.......+..+...++..+..+.
T Consensus 827 ~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~ 861 (1201)
T PF12128_consen 827 DLEQELQELEQELNQLQKEVKQRRKELEEELKALE 861 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555566666666666666666554433
No 50
>KOG0030|consensus
Probab=97.97 E-value=1.2e-05 Score=69.72 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCC-CCCCcccHHHHHHHhCCCccc
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHD-YNPGLIDWKEFIAALRPDWEE 719 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d-~~~g~i~~~ef~~~~~~~~~~ 719 (801)
+...+++++|..||..+||+|+....+.+|+++|.++|.+++.+....++.+ .+-..|+|++|+-++......
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 4457899999999999999999999999999999999999999999888765 123679999999988644433
No 51
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.93 E-value=6.8e-06 Score=52.01 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=12.5
Q ss_pred HHHHHHHhCCCCCCCcccHHHHHHHh
Q psy13767 688 MGAVADMFDHDYNPGLIDWKEFIAAL 713 (801)
Q Consensus 688 ~~~~~~~~d~d~~~g~i~~~ef~~~~ 713 (801)
+..+|+.||+| |||+|+|+||+.+|
T Consensus 2 ~~~~F~~~D~d-~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 2 LKEAFREFDKD-GDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHHHSTT-SSSEEEHHHHHHHH
T ss_pred HHHHHHHHCCC-CCCcCCHHHHHHHH
Confidence 44445555555 55555555555444
No 52
>KOG0377|consensus
Probab=97.93 E-value=2.4e-05 Score=80.50 Aligned_cols=67 Identities=30% Similarity=0.412 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHh----cCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIK----TKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~----~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
.....+..+|+.+|+|++|.|+.+||+++... +..+.+.++|.++++.+|.| +||.||+.||+++.+
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~N-kDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLN-KDGKIDLNEFLEAFR 614 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccC-CCCcccHHHHHHHHh
Confidence 45567888999999999999999999998764 45678899999999999999 999999999999986
No 53
>KOG0041|consensus
Probab=97.85 E-value=3.8e-05 Score=70.71 Aligned_cols=73 Identities=21% Similarity=0.394 Sum_probs=66.4
Q ss_pred HHHHHhHHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 641 FLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 641 ~l~~~~~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
|-.+-...+..+..+|+.+|.|.||+|+..||...|..+|.+-|-.-+..+|..+|-| .+|.|+|.||+-+.+
T Consensus 90 F~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded-~dgklSfreflLIfr 162 (244)
T KOG0041|consen 90 FSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDED-FDGKLSFREFLLIFR 162 (244)
T ss_pred hhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcc-cccchhHHHHHHHHH
Confidence 6544457788899999999999999999999999999999999999999999999999 999999999988654
No 54
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.85 E-value=1.6e-05 Score=50.27 Aligned_cols=26 Identities=38% Similarity=0.687 Sum_probs=23.6
Q ss_pred HHHHHhcccccCCCCCcCHHHHHHHH
Q psy13767 651 RLTDLFRKMDKNNDGLIPREDFVDGI 676 (801)
Q Consensus 651 ~~~~~F~~~D~d~~g~i~~~e~~~~l 676 (801)
++..+|+.||+||||+|+.+||..++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 47889999999999999999998764
No 55
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.72 E-value=2.4e-05 Score=50.82 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=25.5
Q ss_pred HHHHHhcccccCCCCCcCHHHHHHHHH-hcC
Q psy13767 651 RLTDLFRKMDKNNDGLIPREDFVDGII-KTK 680 (801)
Q Consensus 651 ~~~~~F~~~D~d~~g~i~~~e~~~~l~-~~g 680 (801)
++..+|+.||+|+||.|+.+||..+|. ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467899999999999999999999998 665
No 56
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.67 E-value=0.00022 Score=58.52 Aligned_cols=64 Identities=14% Similarity=0.298 Sum_probs=52.0
Q ss_pred HHHHHHHHhcccccCCCCCcCHHHHHHHHHh-----cCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHh
Q psy13767 648 KKSRLTDLFRKMDKNNDGLIPREDFVDGIIK-----TKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAAL 713 (801)
Q Consensus 648 ~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~-----~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~ 713 (801)
.+..+..+|..+-.| .|+++..||...|.. ++.+-.+..++.+++..|.| +||.|||.||+..+
T Consensus 6 ai~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n-~Dg~vdF~EF~~Lv 74 (91)
T cd05024 6 SMEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDC-RDGKVGFQSFFSLI 74 (91)
T ss_pred HHHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCC-CCCcCcHHHHHHHH
Confidence 345567788888744 479999999998853 34455678899999999999 99999999999876
No 57
>PLN02964 phosphatidylserine decarboxylase
Probab=97.62 E-value=0.00011 Score=82.95 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=60.8
Q ss_pred HHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhCC
Q psy13767 651 RLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRP 715 (801)
Q Consensus 651 ~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~~ 715 (801)
.+..+|+.+|.|++|.|+.+||...|..+|...+++++..+|+.||.| ++|.|+++||...|..
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkD-gdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLN-GDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCC-CCCcCCHHHHHHHHHh
Confidence 478999999999999999999999999999888999999999999999 9999999999999875
No 58
>PLN02964 phosphatidylserine decarboxylase
Probab=97.59 E-value=0.00012 Score=82.75 Aligned_cols=65 Identities=12% Similarity=0.259 Sum_probs=58.2
Q ss_pred HhHHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcC-CCCCHHH---HHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 645 MNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTK-FETSKLE---MGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 645 ~~~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g-~~~~~~e---~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
+.....++.++|..||+|+||.| ++.++..+| ..+++.+ +..++..+|.| ++|.|+|+||+.+|.
T Consensus 138 ~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~D-gdG~IdfdEFl~lL~ 206 (644)
T PLN02964 138 VTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYD-EDGQLSFSEFSDLIK 206 (644)
T ss_pred cHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCC-CCCeEcHHHHHHHHH
Confidence 33566889999999999999997 999999999 5888887 89999999999 999999999998775
No 59
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.55 E-value=0.52 Score=59.60 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=40.4
Q ss_pred ccHHHHHHHhCCCcccCCCCCchhhhhHHHHhhhcccccccccceeEcCCCccccCCcchhHHHhhhcCccceecCcc
Q psy13767 704 IDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVFQVGEGKYRFGDSQKLRLVRILRSTVMVRVGGG 781 (801)
Q Consensus 704 i~~~ef~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~c~~~~~~~v~~~~~g~y~~g~~~~~~~~r~~~~~~~~rvg~g 781 (801)
++|.-|+.++-.+. ....-.++.......+.....||.-..+. ....+.|.|+ ..-+--+.+-|.|+++|-
T Consensus 696 ~~~~~~~~A~lg~~---~~~iVv~d~~~A~~ai~~L~~~p~d~~li--~~~~~~~~~~--~~~~~~~~~~v~~~~~~~ 766 (1486)
T PRK04863 696 LEDAPYFSALYGPA---RHAIVVPDLSDAAEQLAGLEDCPEDLYLI--EGDPDSFDDS--VFSVEELEKAVVVKIADR 766 (1486)
T ss_pred cchHHHHHHHHHhh---hCeEEeCCHHHHHHHHHhccCCccceeee--cCChhHHhcc--CccHHHhcCCeeeeecch
Confidence 55666655442211 11112234466666667778899555555 3344667766 555666667788888653
No 60
>KOG0038|consensus
Probab=97.45 E-value=0.00072 Score=59.01 Aligned_cols=83 Identities=24% Similarity=0.354 Sum_probs=63.8
Q ss_pred cCCHHHHHHHHHHHHh--HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhc-CCCCCHHHH----HHHHHHhCCCCCCCc
Q psy13767 631 NFSWDDWRKRFLRFMN--HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKT-KFETSKLEM----GAVADMFDHDYNPGL 703 (801)
Q Consensus 631 ~f~f~~~~~~~l~~~~--~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~-g~~~~~~e~----~~~~~~~d~d~~~g~ 703 (801)
+..|+.|.+.|.-+.. ...-...=+|+.+|-|+|+.|...++...+..+ ...++.+|+ ++++++.|.| |||.
T Consensus 87 nlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~D-gDgk 165 (189)
T KOG0038|consen 87 NLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLD-GDGK 165 (189)
T ss_pred cccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCC-CCCc
Confidence 6788887775543332 223345567999999999999999999888764 566777775 5566788999 9999
Q ss_pred ccHHHHHHHhC
Q psy13767 704 IDWKEFIAALR 714 (801)
Q Consensus 704 i~~~ef~~~~~ 714 (801)
++|.+|-..+.
T Consensus 166 l~~~eFe~~i~ 176 (189)
T KOG0038|consen 166 LSFAEFEHVIL 176 (189)
T ss_pred ccHHHHHHHHH
Confidence 99999988774
No 61
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.43 E-value=0.00039 Score=74.40 Aligned_cols=53 Identities=32% Similarity=0.478 Sum_probs=47.3
Q ss_pred HHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 648 KKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 648 ~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
....+..+|+.||.||||.|+.+||.. +..+|..+|.| |+|.|+|+||..++.
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d-~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLN-HDGKITPEEMRAGLG 384 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCC-CCCCCcHHHHHHHHH
Confidence 456788999999999999999999931 57899999999 999999999999874
No 62
>KOG0994|consensus
Probab=97.37 E-value=0.52 Score=55.29 Aligned_cols=82 Identities=11% Similarity=0.189 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13767 67 NRFDNLNEGASQRMDALEQAMAVA------KQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILR 140 (801)
Q Consensus 67 ~rw~~L~~~~~~r~~~Le~~~~~~------~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l~~el~~ 140 (801)
..|+.+...+..|..+|.+..... .-|...+..+..-|.++-..|.+. +.+.+.+.++-.....+.+.|..
T Consensus 1167 ~~WD~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~---svs~~~i~~l~~~~~~lr~~l~~ 1243 (1758)
T KOG0994|consen 1167 QTWDAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAP---SVSAEDIAQLASATESLRRQLQA 1243 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777766666555433 347788888888888887666443 34666677777777777777766
Q ss_pred cCccHHHHHHH
Q psy13767 141 KKPDFTELTDI 151 (801)
Q Consensus 141 ~~~~~~~l~~~ 151 (801)
....+..+...
T Consensus 1244 ~~e~L~~~E~~ 1254 (1758)
T KOG0994|consen 1244 LTEDLPQEEET 1254 (1758)
T ss_pred HHhhhhhhhhh
Confidence 55555444443
No 63
>KOG4065|consensus
Probab=97.30 E-value=0.00047 Score=57.46 Aligned_cols=59 Identities=20% Similarity=0.402 Sum_probs=46.2
Q ss_pred HHhcccccCCCCCcCHHHHHHHHHh------cCC---C-CCHHHHHHHHHH----hCCCCCCCcccHHHHHHHh
Q psy13767 654 DLFRKMDKNNDGLIPREDFVDGIIK------TKF---E-TSKLEMGAVADM----FDHDYNPGLIDWKEFIAAL 713 (801)
Q Consensus 654 ~~F~~~D~d~~g~i~~~e~~~~l~~------~g~---~-~~~~e~~~~~~~----~d~d~~~g~i~~~ef~~~~ 713 (801)
-.|+..|-|+||.|+-=|+..++.. .|. + +++.|+..+++. -|.| +||+|||.||+...
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN-~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFN-GDGVIDYGEFLKRQ 143 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccC-CCceeeHHHHHhhc
Confidence 4588899999999999999998864 343 1 256676666654 4889 99999999999864
No 64
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.25 E-value=0.00018 Score=43.79 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=14.9
Q ss_pred HHHhcccccCCCCCcCHHHHHHH
Q psy13767 653 TDLFRKMDKNNDGLIPREDFVDG 675 (801)
Q Consensus 653 ~~~F~~~D~d~~g~i~~~e~~~~ 675 (801)
.++|+.+|.|+||.|+..||...
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45666677777777777666553
No 65
>KOG0036|consensus
Probab=97.20 E-value=0.00068 Score=70.00 Aligned_cols=67 Identities=22% Similarity=0.407 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCC-CCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFE-TSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~-~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
+...+++.+|+.||.+++|.|+..++..++..++++ ....-+..++...|.| .+|.+||.||...+.
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~-~dg~vDy~eF~~Y~~ 78 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDAN-RDGRVDYSEFKRYLD 78 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccC-cCCcccHHHHHHHHH
Confidence 445678899999999999999999999999999888 5555688889999999 999999999998774
No 66
>KOG0035|consensus
Probab=97.20 E-value=0.00032 Score=80.29 Aligned_cols=399 Identities=15% Similarity=0.111 Sum_probs=227.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHcCCCChhHHHH
Q psy13767 242 AEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKK 321 (801)
Q Consensus 242 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~ 321 (801)
...|-.....-..|....+..+...+.....++.++...+.|..|..++..+...+..+...+..+-.. ...++..+..
T Consensus 396 ~~~f~~~~s~~~~~~pg~e~~l~~~d~~~~lle~~ke~~~~~ea~~~~~~~~~~~~e~~~ai~~~~~~~-~~~~~~~~a~ 474 (890)
T KOG0035|consen 396 ASKFSQKASLHESWTPGKEQVLFLNDYGQALLEECKELTKKHEAFESDLSAHQDNVEAFCAIAHELNEL-LYDDAKLVAA 474 (890)
T ss_pred hhhccccCchhhhhccchhhhhhhcchHHHHHHHHHhhcccccccccchhhhhcchhHHHHHHHHhhhh-hhhhhhhhhh
Confidence 467888888889999888888877765555678888899999999999999999999999999999884 4556777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCcHHHHHHHh----HHHHHHHHHHHHHHHHHHHHhHH
Q psy13767 322 HIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHETLQRKGEQGTITALFAKR----EENLIHAMEKAMEFHETLQQNRD 397 (801)
Q Consensus 322 ~l~~l~~~w~~l~~~~~~r~~~L~~~l~~~~~~~~~~~~l~~~~ti~~l~~kr----~~wl~~a~~~a~~~~~~L~~~~e 397 (801)
....+...|.++-.+...|...|..............-+ ..+| ..||+.++....
T Consensus 475 ~~q~i~dq~~~~~~ls~~r~pal~~~~~~~dk~~~~~le----------~a~Raa~~~~~l~~~~~d~~----------- 533 (890)
T KOG0035|consen 475 DCQHICDQWDDLGQLSRKRRPALMQMEKVLDKLAVLTLE----------FAKRAAPFNNWLKGVQEDLQ----------- 533 (890)
T ss_pred hhhhccccccccchhhhhhchhhhhhhhhhHHHHHHHHH----------HHHHhhhhhhhhhhhhhhcc-----------
Confidence 899999999999998777777777655321111110000 0111 245555332110
Q ss_pred hhhhhccchHHHhhhhcCCcccHHHHHHHHHHHHHHHHHHHHhhH---hHHH----HHHHHHHHHhhcCcchhhhHHHHH
Q psy13767 398 DCKKADCNADAVQTFVNSLPEDDQEARTQLAEHEKFLRELAEKEI---EKDA----TIGLAQRILVKSHPDGATVIKHWI 470 (801)
Q Consensus 398 dlk~~l~~~e~~~r~~~~~~~d~~~l~~~l~~~~~~~~~l~~~~~---~v~~----l~~~~~~Ll~~~~p~~~~~i~~~~ 470 (801)
.........+++.++..|..|...+..... ..-. ....++.+-...+|...+.+..
T Consensus 534 ---------------d~~~~~~ire~~~~~~a~~~~k~t~p~a~~~~~~~~~e~~e~~~~~~~~~~~~~~~~np~~~~-- 596 (890)
T KOG0035|consen 534 ---------------DNEISYSIREIQRLRAADLQFKSTLPEADGEGQKISDEEKEREKVSEQLNPKIEPDTNPYTTL-- 596 (890)
T ss_pred ---------------cchhccchHhhhccchhhhhhcccCccccchhhhhhhhhhHHHHhhhhcCccccccccccccc--
Confidence 011112223333333333333322221111 1111 1111111111222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHH
Q psy13767 471 TIIQSRWEEVSSWAKQREERLRNHLRS-------LQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKE 543 (801)
Q Consensus 471 ~~l~~rw~~l~~~~~~r~~~L~~~~~~-------~~~f~~~~~el~~Wl~~~e~~l~~~~~~~~~~d~~~~~~~l~~hk~ 543 (801)
.+...|+.+......+..-+...... ...|....+-...|+...-...... .-.+....+..+...+.
T Consensus 597 -s~~~~~d~v~~~~~~~~~~~~~~~~~q~~~~s~~~~~~q~an~~~p~vp~~~~e~s~~----~~~~~gt~e~~~~rLr~ 671 (890)
T KOG0035|consen 597 -SIYGKWDAVLSSVPDRDSIEANVHARQQPNESLRRVFAQQANLDGPWVPAKMEESSRI----NINDQGTLEDRLERLRE 671 (890)
T ss_pred -ccccchhhhcccccccchhhHHHHHhhccCccccccccccccCCCcccCchhhccccc----ccccCCCHHHHHHHHHH
Confidence 17778988888887777655544322 1234444455566665543332211 11223344445555444
Q ss_pred HHHHHHhhhhhhhhhhccCccccccCCCCCCCCCCCCCCCCCCCCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 544 FMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWRNVWLLAWERQRRLQERLNYL 623 (801)
Q Consensus 544 ~~~ei~~~~~~~~~l~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~~~~L~~~W~~L~~~~~~r~~~L~~~l~~l 623 (801)
...-+-..++..+.+....+. + ++.+.+.+ ....--...+...|+.+..-+..-....+.....
T Consensus 672 ~~~~~~~~k~~~~~~~~~~q~-------~--~~~~~~~~------~~~~~~~e~~~~g~e~~~~~~~~~~~~~en~il~- 735 (890)
T KOG0035|consen 672 TEERSMNYKSNGDLLAKQHQL-------M--QEDIIFEN------KHTRYTMEDLKVGWEELLTIIERTINESENEILE- 735 (890)
T ss_pred HHHHhhccCcchhHHHHHHHH-------h--hhhccccc------cccccchhhccccccccccccccccccHHHHHHH-
Confidence 444444466555555444432 1 12221101 1111234556666777666554322222222210
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhHHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCH-----HHHHHHHHHhCCC
Q psy13767 624 IELEKVKNFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSK-----LEMGAVADMFDHD 698 (801)
Q Consensus 624 ~e~~~~~~f~f~~~~~~~l~~~~~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~-----~e~~~~~~~~d~d 698 (801)
+ +|....+ ....+++..|+.||+...|.++..+|..++..+|..... .+...++...|.+
T Consensus 736 -------R-~sk~~sQ-------~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l 800 (890)
T KOG0035|consen 736 -------R-DSKGTSQ-------YVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPL 800 (890)
T ss_pred -------h-cccchhH-------HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcc
Confidence 0 1211112 234678899999999999999999999999999987764 3455566777888
Q ss_pred CCCCcccHHHHHHHhCCC
Q psy13767 699 YNPGLIDWKEFIAALRPD 716 (801)
Q Consensus 699 ~~~g~i~~~ef~~~~~~~ 716 (801)
+.|.++|.+|...|...
T Consensus 801 -~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 801 -IQGQVQLLEFEDDLERE 817 (890)
T ss_pred -cccceeHHHHHhHhhhh
Confidence 88999999999988433
No 67
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.97 E-value=0.0018 Score=55.33 Aligned_cols=64 Identities=23% Similarity=0.472 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
.....+..+|...|. ++|.|+..+.+..+...|. +...+..+-.-.|.| ++|.++++||+-+|+
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L--~~~~L~~IW~LaD~~-~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGL--PRDVLAQIWNLADID-NDGKLDFEEFAIAMH 70 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTS--SHHHHHHHHHHH-SS-SSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCC--CHHHHHHHHhhhcCC-CCCcCCHHHHHHHHH
Confidence 455778899999985 6799999999999987765 567799999999999 999999999999884
No 68
>KOG4240|consensus
Probab=96.95 E-value=0.64 Score=54.91 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=113.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHH
Q psy13767 206 SVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKE 285 (801)
Q Consensus 206 ~~~~i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~d~~~~~~~l~~~~~ 285 (801)
.+..|+..+..+...-..+.-....+..++.-+... .++..+..++..|+.+-...|......+++......+...|..
T Consensus 242 mve~vQ~~le~l~~~~q~~El~~d~~s~rl~~a~~l-~~l~~~k~qv~~~~rng~smLt~~~~~~s~~~et~~Lq~~~~~ 320 (1025)
T KOG4240|consen 242 MVEAVQGLLESLEEEVQRLELPADVRSTRLEQASQL-AKLLEDKNQVLALIRNGLSMLTQLRVLASDLSETSQLQREHRQ 320 (1025)
T ss_pred HHHHHHHHHHhHHHHHHhhcchhhchhhHHHHHHHH-HHHHHHHHHHHHHHhcchhhhhhhccCCCcCCccHHHHhhHhh
Confidence 456677777777777777777777788888888887 6999999999999999999998887777777777788888888
Q ss_pred HHHHHhcc-chhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 286 IKAEIDQT-KPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAM 348 (801)
Q Consensus 286 l~~el~~~-~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~l 348 (801)
|..-.... ...-..+...+..++. ..+++..++..++..++.+|..+...+..|...+..+.
T Consensus 321 f~d~~e~k~~~~q~~~~~~a~~~~~-~~h~~~~e~~~~le~~~t~~qql~~~~e~r~~~vaa~~ 383 (1025)
T KOG4240|consen 321 FQDAQEVKTLLSQLQVQQKAFDLLQ-NKHQNRDESLEKLETLQTKWQQLMTAMEDRLKLVAAAV 383 (1025)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh-chhhhHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 88866652 2222344455556666 48899999999999999999999999999999998887
No 69
>KOG0994|consensus
Probab=96.78 E-value=1.8 Score=51.09 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy13767 464 TVIKHWITIIQSRWEEVSSWAKQREERLRNHLRSLQDLDSLLEELL 509 (801)
Q Consensus 464 ~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~~~~~f~~~~~el~ 509 (801)
...+..++.|...++.+...+..|.+.-..+......+.....+|+
T Consensus 1657 ~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll 1702 (1758)
T KOG0994|consen 1657 LSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLL 1702 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 3456667788888888888888887777777665555555444444
No 70
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.65 E-value=0.0022 Score=39.02 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCCCCCcccHHHHHHHh
Q psy13767 688 MGAVADMFDHDYNPGLIDWKEFIAAL 713 (801)
Q Consensus 688 ~~~~~~~~d~d~~~g~i~~~ef~~~~ 713 (801)
+.+.|..+|.| +||.|+++||...+
T Consensus 1 l~~~F~~~D~d-~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTD-GDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTT-SSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCC-CCCcCCHHHHHHHC
Confidence 46789999999 99999999998753
No 71
>KOG0034|consensus
Probab=96.58 E-value=0.0032 Score=60.04 Aligned_cols=99 Identities=22% Similarity=0.318 Sum_probs=70.2
Q ss_pred HHHhcccccCCCCC-cCHHHHHHHHHhcCCCCCHH-HHHHHHHHhCCCCCCCcccHHHHHHHhCCCcccCCCCCchhhhh
Q psy13767 653 TDLFRKMDKNNDGL-IPREDFVDGIIKTKFETSKL-EMGAVADMFDHDYNPGLIDWKEFIAALRPDWEEKKPNTESEKIH 730 (801)
Q Consensus 653 ~~~F~~~D~d~~g~-i~~~e~~~~l~~~g~~~~~~-e~~~~~~~~d~d~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~i~ 730 (801)
..+|+.||.+++|. |+..+|...+...-...+.. .+.=.++.||.+ ++|+|+.+++..++..--...... ..+-+.
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~-~~G~I~reel~~iv~~~~~~~~~~-~~e~~~ 146 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLD-GDGFISREELKQILRMMVGENDDM-SDEQLE 146 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCC-CCCcCcHHHHHHHHHHHHccCCcc-hHHHHH
Confidence 45677889888888 99999999998776655555 577788999999 999999999988774221111111 234455
Q ss_pred HHHHhhhcccccccccceeEcCCCccccCCc
Q psy13767 731 DEVKRLVQLCTCRQKFRVFQVGEGKYRFGDS 761 (801)
Q Consensus 731 ~~v~~~~~~c~~~~~~~v~~~~~g~y~~g~~ 761 (801)
++++.... ....-++|++.|.|+
T Consensus 147 ~i~d~t~~--------e~D~d~DG~IsfeEf 169 (187)
T KOG0034|consen 147 DIVDKTFE--------EADTDGDGKISFEEF 169 (187)
T ss_pred HHHHHHHH--------HhCCCCCCcCcHHHH
Confidence 55554443 333447899999997
No 72
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.53 E-value=2.2 Score=48.94 Aligned_cols=121 Identities=11% Similarity=0.203 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCChHHHHH----------
Q psy13767 209 DIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQ---------- 278 (801)
Q Consensus 209 ~i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~d~~~~~~---------- 278 (801)
.-+..+..|...|..+...+.........+.. .+...+..+.....+.+....+ ||+..+..
T Consensus 133 ~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~---~Le~~L~~ie~~F~~f~~lt~~-----GD~~~A~eil~~l~~~~~ 204 (560)
T PF06160_consen 133 KNREEIEELKEKYRELRKELLAHSFSYGPAIE---ELEKQLENIEEEFSEFEELTEN-----GDYLEAREILEKLKEETD 204 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchhHH---HHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHH
Confidence 33556677777777777777666665555443 3445555555555555555433 23333322
Q ss_pred ----HHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy13767 279 ----QQYALKEIKAEID-QTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALF 337 (801)
Q Consensus 279 ----~l~~~~~l~~el~-~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~~w~~l~~~~ 337 (801)
.+++.-.+-.++. .....++.|....+.|....-+.....|...+..+...-......+
T Consensus 205 ~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L 268 (560)
T PF06160_consen 205 ELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALL 268 (560)
T ss_pred HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2223333333332 2344555666656666654333334456666666665555444443
No 73
>KOG4223|consensus
Probab=96.39 E-value=0.005 Score=62.10 Aligned_cols=63 Identities=21% Similarity=0.374 Sum_probs=49.6
Q ss_pred HHHHhcccccCCCCCcCHHHHHHHHHhcCC-CCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhCC
Q psy13767 652 LTDLFRKMDKNNDGLIPREDFVDGIIKTKF-ETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRP 715 (801)
Q Consensus 652 ~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~-~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~~ 715 (801)
=.+-|+.-|.|+||.++..||...|.=-.+ .+..-=|..-+..+|+| |||.|+++||+.-|..
T Consensus 165 De~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn-~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 165 DEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKN-GDGKISLEEFIGDLYS 228 (325)
T ss_pred HHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccC-CCCceeHHHHHhHHhh
Confidence 346799999999999999999998863222 22333466777889999 9999999999998853
No 74
>KOG0037|consensus
Probab=96.39 E-value=0.0092 Score=56.79 Aligned_cols=60 Identities=28% Similarity=0.434 Sum_probs=36.6
Q ss_pred HHHHhcccccCCCCCcCHHHHHHHHHhcC-CCCCHHHHHHHHHHhCCCCCCCcccHHHHHHH
Q psy13767 652 LTDLFRKMDKNNDGLIPREDFVDGIIKTK-FETSKLEMGAVADMFDHDYNPGLIDWKEFIAA 712 (801)
Q Consensus 652 ~~~~F~~~D~d~~g~i~~~e~~~~l~~~g-~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~ 712 (801)
+...|...|+|+.|.|+.+|+..+|-..+ -..+.+-|.-|+..||.+ ..|.|+|.||.+.
T Consensus 59 ~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~-~~G~i~f~EF~~L 119 (221)
T KOG0037|consen 59 LAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRD-NSGTIGFKEFKAL 119 (221)
T ss_pred HHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCC-CCCccCHHHHHHH
Confidence 33456666666666666666666665332 334455566666666666 6666666666663
No 75
>KOG4240|consensus
Probab=96.25 E-value=1 Score=53.35 Aligned_cols=157 Identities=21% Similarity=0.286 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q psy13767 55 RKAIERQLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDAL 134 (801)
Q Consensus 55 ~~~i~~~l~~L~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l 134 (801)
...|+..+..+...-..+.-....+..++..+... ..+.....++..|+.+-...|.+..-.+.+.+....+...|..|
T Consensus 243 ve~vQ~~le~l~~~~q~~El~~d~~s~rl~~a~~l-~~l~~~k~qv~~~~rng~smLt~~~~~~s~~~et~~Lq~~~~~f 321 (1025)
T KOG4240|consen 243 VEAVQGLLESLEEEVQRLELPADVRSTRLEQASQL-AKLLEDKNQVLALIRNGLSMLTQLRVLASDLSETSQLQREHRQF 321 (1025)
T ss_pred HHHHHHHHHhHHHHHHhhcchhhchhhHHHHHHHH-HHHHHHHHHHHHHHhcchhhhhhhccCCCcCCccHHHHhhHhhh
Confidence 68899999999999999999999999999988885 66899999999999999988877766677777777788888888
Q ss_pred HHHHHccC-ccHHHHHHHHHHhhcccChhhhhhHhhhHHhHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCchHHHHHH
Q psy13767 135 HKEILRKK-PDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTDIKKK 213 (801)
Q Consensus 135 ~~el~~~~-~~~~~l~~~~~~L~~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~LW~~~~l~Ls~~~~~~~~i~~~ 213 (801)
..-...+. .....+...+..+.. .. +.....+-.+
T Consensus 322 ~d~~e~k~~~~q~~~~~~a~~~~~-~~-------------------------------------------h~~~~e~~~~ 357 (1025)
T KOG4240|consen 322 QDAQEVKTLLSQLQVQQKAFDLLQ-NK-------------------------------------------HQNRDESLEK 357 (1025)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-ch-------------------------------------------hhhHHHHHHh
Confidence 77665511 111222222332222 11 2244556677
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 214 LERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQ 260 (801)
Q Consensus 214 l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e 260 (801)
+..++..|..+...+..|.+.+..+... ......+..-|++.+
T Consensus 358 le~~~t~~qql~~~~e~r~~~vaa~~~~----~~t~e~v~~iLe~le 400 (1025)
T KOG4240|consen 358 LETLQTKWQQLMTAMEDRLKLVAAAVAF----YKTSEQVEPILEDLE 400 (1025)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHhcc
Confidence 7888888888888888888877765544 344444444444433
No 76
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.20 E-value=3.4 Score=47.64 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHHHHHHHc
Q psy13767 93 FQDKLTGILDWLDKSEKKIKDMEL--IPTDEEKIQQRIREHDALHKEILR 140 (801)
Q Consensus 93 f~~~~~~l~~WL~~~e~~l~~~~~--~~~d~~~v~~~l~~~~~l~~el~~ 140 (801)
|-..+..+..-|...+..+..... ...|...+...+.+.+.-...+..
T Consensus 163 ~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~ 212 (569)
T PRK04778 163 FGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQ 212 (569)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555444433211 133444444444444443333333
No 77
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.19 E-value=0.012 Score=51.48 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHH
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIA 711 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~ 711 (801)
.....+..-|..+|.|+||.|+..|+......+ ...+.=+..++...|.| +||.|++.|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n-~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVN-KDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT--SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCC-CCCCCCHHHHcc
Confidence 445667778999999999999999998766544 22333478899999999 999999999974
No 78
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.18 E-value=0.0056 Score=39.58 Aligned_cols=27 Identities=41% Similarity=0.705 Sum_probs=23.6
Q ss_pred HHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 687 EMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 687 e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
++..+|..||.| ++|+|+++||..+|+
T Consensus 1 ~l~~~F~~~D~d-~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKD-GDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TT-SSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCC-CCCcCcHHHHHHHHH
Confidence 478899999999 999999999999884
No 79
>KOG0046|consensus
Probab=96.11 E-value=0.012 Score=62.74 Aligned_cols=66 Identities=20% Similarity=0.401 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCC---CHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFET---SKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~---~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
+....+++.|..+| |++|+|+..++..++...+... ..+++..++..++.| .+|.|+|++|+.++.
T Consensus 16 ~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~-~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 16 EELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVD-ADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCC-cCCccCHHHHHHHHH
Confidence 45567889999999 9999999999999998877654 477899999999999 999999999999664
No 80
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.99 E-value=7.2 Score=49.47 Aligned_cols=76 Identities=16% Similarity=0.282 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHH
Q psy13767 466 IKHWITIIQSRWEEVSSWAKQREERLRNHLRS-LQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEF 544 (801)
Q Consensus 466 i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~~-~~~f~~~~~el~~Wl~~~e~~l~~~~~~~~~~d~~~~~~~l~~hk~~ 544 (801)
+.+.....+..|..+..........+...... ...+...+.++..|.. ..|.. -|.|+..+..+-.+.+.+
T Consensus 712 ~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~---~eL~~-----~GvD~~~I~~l~~~i~~L 783 (1201)
T PF12128_consen 712 LKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYN---QELAG-----KGVDPERIQQLKQEIEQL 783 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHh-----CCCCHHHHHHHHHHHHHH
Confidence 44444566677888888877777777665543 3457777788888777 34553 455665555555555555
Q ss_pred HHHHH
Q psy13767 545 MEATS 549 (801)
Q Consensus 545 ~~ei~ 549 (801)
..+|.
T Consensus 784 ~~~l~ 788 (1201)
T PF12128_consen 784 EKELK 788 (1201)
T ss_pred HHHHH
Confidence 54444
No 81
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.98 E-value=2.3 Score=43.72 Aligned_cols=240 Identities=15% Similarity=0.213 Sum_probs=137.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 6 KPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQLNELMNRFDNLNEGASQRMDALEQ 85 (801)
Q Consensus 6 ~~~~~d~~~v~~~l~~~~~l~~el~~~~~~v~~l~~~g~~L~~~~~~~~~~~i~~~l~~L~~rw~~L~~~~~~r~~~Le~ 85 (801)
.+.++..+.....+...+.+..++..+...+.........+-. ....+...+..|..+=..............+.
T Consensus 10 n~~t~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~-----~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~ 84 (264)
T PF06008_consen 10 NALTGAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEK-----ELESLEQDVENLQEKATKVSRKAQQLNNNTER 84 (264)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555655666666666555555443333332211 13455666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhcccChhh
Q psy13767 86 AMAVAKQFQDKLTGILDWLDKSEKKIKDME--LIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDE 163 (801)
Q Consensus 86 ~~~~~~~f~~~~~~l~~WL~~~e~~l~~~~--~~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~ 163 (801)
....++.....+..+..=+.+.-..+.... ..+.+...+...+.+-+.+..+|..+. +......|..-..
T Consensus 85 t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~------ 156 (264)
T PF06008_consen 85 TLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD--FTPQRQNAEDELK------ 156 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHH------
Confidence 666666666666666666666555554322 335677889999999999999997763 5554444432211
Q ss_pred hhhHhhhHHhHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy13767 164 AAGVADKLQDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAE 243 (801)
Q Consensus 164 ~~~i~~~~~~l~~r~~~l~~~~~~r~~~LW~~~~l~Ls~~~~~~~~i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~ 243 (801)
.+. .-+..+...|.............+. ....
T Consensus 157 ------------------------------------------~A~---~LL~~v~~~~~~~~~~~~~l~~~i~---~~L~ 188 (264)
T PF06008_consen 157 ------------------------------------------EAE---DLLSRVQKWFQKPQQENESLAEAIR---DDLN 188 (264)
T ss_pred ------------------------------------------HHH---HHHHHHHHHHhhHHHhhHHHHHHHH---HHHH
Confidence 111 1122222222222222222222222 3336
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q psy13767 244 KFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMK 309 (801)
Q Consensus 244 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~ 309 (801)
+|...+.++..||.++........ .-....+..+..++.=..++......+......|..++.
T Consensus 189 ~~~~kL~Dl~~~l~eA~~~~~ea~---~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~ 251 (264)
T PF06008_consen 189 DYNAKLQDLRDLLNEAQNKTREAE---DLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLD 251 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999887775543 223334455566666666777777777777777776665
No 82
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.83 E-value=4.8 Score=46.24 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=24.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHh
Q psy13767 415 SLPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILV 456 (801)
Q Consensus 415 ~~~~d~~~l~~~l~~~~~~~~~l~~~~~~v~~l~~~~~~Ll~ 456 (801)
..|-+.+.+..++.........+...-..+-.-..+++.++.
T Consensus 462 ~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQ 503 (560)
T PF06160_consen 462 QVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQ 503 (560)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777766666555555554444444445555554
No 83
>KOG4223|consensus
Probab=95.81 E-value=0.016 Score=58.60 Aligned_cols=67 Identities=22% Similarity=0.466 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
+...++..+|..+|.++||.|+.+|+...+...-......+....+..+|.| .+|.|+|+++...+-
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~-~Dg~i~~eey~~~~~ 140 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKN-KDGFITWEEYLPQTY 140 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ccceeeHHHhhhhhh
Confidence 4567899999999999999999999999887655555566778888899999 999999999998774
No 84
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.77 E-value=9.1 Score=48.94 Aligned_cols=215 Identities=13% Similarity=0.193 Sum_probs=129.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhcccChhhhhhHhhhHHhHHHHHHHHHHHHh------hhhh
Q psy13767 117 IPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASD------NLGQ 190 (801)
Q Consensus 117 ~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~------~r~~ 190 (801)
++.-...+..++.....-..-+..+...+..|......|.. +|.....++........+|..+...+- .|+.
T Consensus 892 ~~~~~~~~~~~~~~~~~a~~y~~~~~~~L~qLE~~l~~L~~--Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 969 (1486)
T PRK04863 892 LADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQS--DPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRA 969 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777766666677778888888888877763 566667777777777777776555432 2333
Q ss_pred hh-hhhhccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy13767 191 YA-FLYNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPP 269 (801)
Q Consensus 191 ~L-W~~~~l~Ls~~~~~~~~i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~ 269 (801)
++ |-...-.|+......+.|+..+..+...+..+......-+..+.........+...++....=+.+.+..|.....+
T Consensus 970 ~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~ 1049 (1486)
T PRK04863 970 HFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVP 1049 (1486)
T ss_pred hccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33 21100012222235677888888888888888888877777777777666777788888888888888888777644
Q ss_pred CCChHHHHHHHHHHHHHHHHHhccc--------------hhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHH
Q psy13767 270 AVEPKAIQQQQYALKEIKAEIDQTK--------------PEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTA 335 (801)
Q Consensus 270 ~~d~~~~~~~l~~~~~l~~el~~~~--------------~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~~w~~l~~ 335 (801)
...-........+ ..+...|.... ..++.+......+-. +...+.+.+..+...|..|..
T Consensus 1050 ~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~-----e~~~~re~I~~aK~~W~~v~~ 1123 (1486)
T PRK04863 1050 ADSGAEERARARR-DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLER-----DYHEMREQVVNAKAGWCAVLR 1123 (1486)
T ss_pred CCccHHHHHHHhH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 3222222222222 34444444333 333333332222221 344556666666777776666
Q ss_pred HHHH
Q psy13767 336 LFAK 339 (801)
Q Consensus 336 ~~~~ 339 (801)
++..
T Consensus 1124 ~~~~ 1127 (1486)
T PRK04863 1124 LVKD 1127 (1486)
T ss_pred HHHh
Confidence 6544
No 85
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.69 E-value=5.6 Score=45.93 Aligned_cols=125 Identities=20% Similarity=0.256 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC---------CChHHHHHHH
Q psy13767 210 IKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPA---------VEPKAIQQQQ 280 (801)
Q Consensus 210 i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~---------~d~~~~~~~l 280 (801)
-+..+..+...|..+...+......+..+... +...+..+..=+...+....+.++.. .....++..+
T Consensus 138 nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~---le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~ 214 (569)
T PRK04778 138 NREEVEQLKDLYRELRKSLLANRFSFGPALDE---LEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIM 214 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccchHHH---HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777776666655555544432 22223333322222222221111100 0112222333
Q ss_pred HHHHHHHHHHhc-cchhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy13767 281 YALKEIKAEIDQ-TKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALF 337 (801)
Q Consensus 281 ~~~~~l~~el~~-~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~~w~~l~~~~ 337 (801)
+..-.+-.++.. .-..++.|..-.++|.....+-+...|...+..|..+-......+
T Consensus 215 ~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l 272 (569)
T PRK04778 215 EEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALL 272 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 333344444444 456777777777888875444455567888888888777644433
No 86
>KOG0377|consensus
Probab=95.45 E-value=0.056 Score=56.44 Aligned_cols=70 Identities=26% Similarity=0.424 Sum_probs=50.7
Q ss_pred HHhHHHHHHHHHhcccccCCCCCcCHHHHHHHHHh-cCCCC---------------------------------------
Q psy13767 644 FMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIK-TKFET--------------------------------------- 683 (801)
Q Consensus 644 ~~~~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~-~g~~~--------------------------------------- 683 (801)
.+......+.+.|+.+|.+++|+|+......++.. +|..+
T Consensus 458 rl~s~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~s 537 (631)
T KOG0377|consen 458 RLRSHRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSS 537 (631)
T ss_pred HHHhhhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhH
Confidence 34455667888899999999999988877766643 12222
Q ss_pred -------CHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 684 -------SKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 684 -------~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
....++.+|..+|.| .+|.|+.+||..+..
T Consensus 538 lvetLYr~ks~LetiF~~iD~D-~SG~isldEF~~a~~ 574 (631)
T KOG0377|consen 538 LVETLYRNKSSLETIFNIIDAD-NSGEISLDEFRTAWK 574 (631)
T ss_pred HHHHHHhchhhHHHHHHHhccC-CCCceeHHHHHHHHH
Confidence 223356678889999 999999999988763
No 87
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.34 E-value=0.043 Score=39.42 Aligned_cols=46 Identities=11% Similarity=0.092 Sum_probs=34.3
Q ss_pred cCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHh
Q psy13767 667 IPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAAL 713 (801)
Q Consensus 667 i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~ 713 (801)
++.+|+...|+.+.+.+++.-+..+|...|++ ++|.++.+||....
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s-~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKS-QSGRLEGEEFEEFY 47 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SS-SSSEBEHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhccc-CCCCccHHHHHHHH
Confidence 56788888888888888888888888888998 88998888887754
No 88
>PF13514 AAA_27: AAA domain
Probab=95.24 E-value=12 Score=47.08 Aligned_cols=142 Identities=18% Similarity=0.306 Sum_probs=79.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhh----CChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 4 NQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAAN----ADPAERKAIERQLNELMNRFDNLNEGASQR 79 (801)
Q Consensus 4 ~~~~~~~d~~~v~~~l~~~~~l~~el~~~~~~v~~l~~~g~~L~~~----~~~~~~~~i~~~l~~L~~rw~~L~~~~~~r 79 (801)
...|+......+...+..+..+...+...+..+......-..+-.. ..+.+.+.+...+....... .+.......
T Consensus 337 ~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~~~~~~-d~~~~~~~~ 415 (1111)
T PF13514_consen 337 ALDPSLAARERIRELLQEREQLEQALAQARRELEEAERELEQLQAELAALPAPPDPEALRAALEAAQRLG-DLEARLQEA 415 (1111)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCChHHHHHHHHHHhcc-cHHHHHHHH
Confidence 4456666778888888888888888777777666665555444322 11122233444444443332 233233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHccCccHHHHHHHH
Q psy13767 80 MDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIA 152 (801)
Q Consensus 80 ~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~~ 152 (801)
...+.... ......+..|--|-...+. |.... +| +.+.|......+..+...+...+..+..+....
T Consensus 416 ~~~~~~~~---~~l~~~l~~L~~w~~~~~~-l~~~~-~P-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1111)
T PF13514_consen 416 EQALEAAE---RRLAAALAALGPWSGDLDA-LAALP-LP-SRETVEAFRAEFEELERQLRRARDRLEELEEEL 482 (1111)
T ss_pred HHHHHHHH---HHHHHHHHhcCCCCCChHH-HhccC-CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332222 2245556666677766654 43432 22 667777777777777777766666555544443
No 89
>KOG4251|consensus
Probab=95.22 E-value=0.01 Score=56.79 Aligned_cols=60 Identities=25% Similarity=0.433 Sum_probs=39.2
Q ss_pred HHHHHHhcccccCCCCCcCHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCCCCCcccHHHHH
Q psy13767 650 SRLTDLFRKMDKNNDGLIPREDFVDGIIKT---KFETSKLEMGAVADMFDHDYNPGLIDWKEFI 710 (801)
Q Consensus 650 ~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~---g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~ 710 (801)
..+..+|...|.|.||+|+..|+..-+... .+.....+-...|..+|+| |||.|.++||-
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpd-gDGhvsWdEyk 163 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPD-GDGHVSWDEYK 163 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCC-CCCceehhhhh
Confidence 346677888888888888888887765421 1222333344456667888 88888888774
No 90
>PRK03918 chromosome segregation protein; Provisional
Probab=94.57 E-value=16 Score=45.03 Aligned_cols=21 Identities=19% Similarity=0.503 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy13767 243 EKFWSELQSVMATLRDLQDNL 263 (801)
Q Consensus 243 ~~f~~~~~~l~~Wl~~~e~~l 263 (801)
..|...+..+...+......+
T Consensus 455 ~~~~~ei~~l~~~~~~l~~~~ 475 (880)
T PRK03918 455 EEYTAELKRIEKELKEIEEKE 475 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444433
No 91
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.50 E-value=21 Score=46.01 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=19.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Q psy13767 416 LPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLA 451 (801)
Q Consensus 416 ~~~d~~~l~~~l~~~~~~~~~l~~~~~~v~~l~~~~ 451 (801)
.|.....+...+...+.....+....+.+..+....
T Consensus 707 ~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~ 742 (1311)
T TIGR00606 707 APDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLK 742 (1311)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344455555555555555555555555555555443
No 92
>KOG0516|consensus
Probab=94.50 E-value=0.15 Score=63.24 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=62.5
Q ss_pred CchhhhhHHHHhhhcccccccccceeEcCCCccccCCc-chhHHHhhhcCccceecCccHhhHHHhhhhcCCCCcc
Q psy13767 724 TESEKIHDEVKRLVQLCTCRQKFRVFQVGEGKYRFGDS-QKLRLVRILRSTVMVRVGGGWVALDEFLIKNDPCRDN 798 (801)
Q Consensus 724 ~~~~~i~~~v~~~~~~c~~~~~~~v~~~~~g~y~~g~~-~~~~~~r~~~~~~~~rvg~g~~~~~~~~~~~~~~~~~ 798 (801)
+....++.........|.|+..+...+...|+|+.|.. .-..+.+..+++++||+|+||.+.+-++.++|||+..
T Consensus 338 ~~~~~~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~~~~ 413 (1047)
T KOG0516|consen 338 SLLRLLDLLPEEEKEKCVLPNQFEEVRGLQGKERVGVQLPLREPDEPLRSPISVRLGCDYEQLEKYLEKGDECRLK 413 (1047)
T ss_pred cchhhhhhchHHHHHHHhhhhHHHHHHHHHhhhhcccccCCcccccCccCCCCcccccchhhHHHHHHhchhhhhh
Confidence 33334445555566789999999999999999999994 4577788888999999999999999999999999864
No 93
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=94.37 E-value=0.033 Score=34.46 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=13.1
Q ss_pred HHHhcccccCCCCCcCHHHHHHHHH
Q psy13767 653 TDLFRKMDKNNDGLIPREDFVDGII 677 (801)
Q Consensus 653 ~~~F~~~D~d~~g~i~~~e~~~~l~ 677 (801)
..+|+.+|.+++|.|+..+|...+.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 3445555555555555555555443
No 94
>PRK02224 chromosome segregation protein; Provisional
Probab=94.21 E-value=19 Score=44.39 Aligned_cols=14 Identities=7% Similarity=0.162 Sum_probs=5.6
Q ss_pred HHHHHHHHHhccch
Q psy13767 282 ALKEIKAEIDQTKP 295 (801)
Q Consensus 282 ~~~~l~~el~~~~~ 295 (801)
.+..+..++...+.
T Consensus 420 ~~~~l~~~~~~~~~ 433 (880)
T PRK02224 420 ERDELREREAELEA 433 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 95
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.13 E-value=23 Score=45.16 Aligned_cols=27 Identities=11% Similarity=0.402 Sum_probs=15.2
Q ss_pred HHHHHhHHHHHHHHHhcccccCCCCCcC
Q psy13767 641 FLRFMNHKKSRLTDLFRKMDKNNDGLIP 668 (801)
Q Consensus 641 ~l~~~~~~~~~~~~~F~~~D~d~~g~i~ 668 (801)
|+.-+......+..+|..+- +|+|.+.
T Consensus 1020 f~~~f~~~~~~f~~~~~~l~-~~~~~l~ 1046 (1164)
T TIGR02169 1020 FMEAFEAINENFNEIFAELS-GGTGELI 1046 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCeEEEE
Confidence 44444444455666666665 6666664
No 96
>KOG2643|consensus
Probab=93.77 E-value=0.091 Score=55.23 Aligned_cols=80 Identities=19% Similarity=0.320 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHhcccccCCCCCcCHHHHHHHHHh------cCC---------CCCHHHHHHH-H-HHh
Q psy13767 633 SWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIK------TKF---------ETSKLEMGAV-A-DMF 695 (801)
Q Consensus 633 ~f~~~~~~~l~~~~~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~------~g~---------~~~~~e~~~~-~-~~~ 695 (801)
.|.++.= ++-.+......+.=+|+.||.||||.|+.+||...... .|. .....++..- . --|
T Consensus 217 sfSdYiF-LlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFF 295 (489)
T KOG2643|consen 217 SFSDYIF-LLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFF 295 (489)
T ss_pred eHHHHHH-HHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhh
Confidence 4444321 33344455566778899999999999999999876621 111 0111133222 2 246
Q ss_pred CCCCCCCcccHHHHHHHhC
Q psy13767 696 DHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 696 d~d~~~g~i~~~ef~~~~~ 714 (801)
..+ |+|.+++++|+..+.
T Consensus 296 G~r-g~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 296 GKR-GNGKLSIDEFLKFQE 313 (489)
T ss_pred ccC-CCccccHHHHHHHHH
Confidence 899 999999999998764
No 97
>KOG4251|consensus
Probab=93.72 E-value=0.24 Score=47.68 Aligned_cols=146 Identities=15% Similarity=0.092 Sum_probs=73.4
Q ss_pred HHHHHHHHhcccccCCCCCcCHHHHHHHHHhc-CCCCCHH-------------HHHHHHHHhCCCCCCCccc--------
Q psy13767 648 KKSRLTDLFRKMDKNNDGLIPREDFVDGIIKT-KFETSKL-------------EMGAVADMFDHDYNPGLID-------- 705 (801)
Q Consensus 648 ~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~-g~~~~~~-------------e~~~~~~~~d~d~~~g~i~-------- 705 (801)
...+-+-.|+..|+||||.|+-+|+.--+.++ |+..++. +=...+..-+++ ..|..|
T Consensus 138 ameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevadairlneelkVDeEtqevlenlkd-RwyqaDsppadlll 216 (362)
T KOG4251|consen 138 AMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKD-RWYQADSPPADLLL 216 (362)
T ss_pred HHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccHHHHHHHHhhhh-hhccccCchhhhhh
Confidence 33445567999999999999999997655433 3332211 111122222334 444444
Q ss_pred -HHHHHHHhCCCcccCCCCCchhhhhHHHHhhhcccccccccceeEc--CCCccc--cCCc-chhHHHhhhcCc--ccee
Q psy13767 706 -WKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVFQV--GEGKYR--FGDS-QKLRLVRILRST--VMVR 777 (801)
Q Consensus 706 -~~ef~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~c~~~~~~~v~~~--~~g~y~--~g~~-~~~~~~r~~~~~--~~~r 777 (801)
-.||+..++|..+.. +. .-+-+++.+...+..-...-....| ..|... -|.. ...-.-+-++.+ ..--
T Consensus 217 teeEflsFLHPEhSrg-mL---rfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDs 292 (362)
T KOG4251|consen 217 TEEEFLSFLHPEHSRG-ML---RFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDS 292 (362)
T ss_pred hHHHHHHHcChHhhhh-hH---HHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhc
Confidence 499999999987642 11 1122222222221111111111111 112211 1111 222222333322 3333
Q ss_pred cCccHhhHHHhhhhcCCCCcc
Q psy13767 778 VGGGWVALDEFLIKNDPCRDN 798 (801)
Q Consensus 778 vg~g~~~~~~~~~~~~~~~~~ 798 (801)
.-+|++|.+|.-+|-||-.-+
T Consensus 293 NhDGivTaeELe~y~dP~n~~ 313 (362)
T KOG4251|consen 293 NHDGIVTAEELEDYVDPQNFR 313 (362)
T ss_pred CCccceeHHHHHhhcCchhhh
Confidence 458999999999999996544
No 98
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.70 E-value=29 Score=44.72 Aligned_cols=87 Identities=14% Similarity=0.118 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q psy13767 56 KAIERQLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALH 135 (801)
Q Consensus 56 ~~i~~~l~~L~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l~ 135 (801)
+.+...+..+......+........+.+..+-.........+..+..=|......+....++..-...+...-..+....
T Consensus 573 ~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Confidence 56667777777777777777766666666665555556666666666666666666532222111233444444444444
Q ss_pred HHHHccC
Q psy13767 136 KEILRKK 142 (801)
Q Consensus 136 ~el~~~~ 142 (801)
.++....
T Consensus 653 ~~~~~~~ 659 (1311)
T TIGR00606 653 KQRAMLA 659 (1311)
T ss_pred HHHHHHH
Confidence 4444433
No 99
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=93.62 E-value=0.064 Score=33.09 Aligned_cols=27 Identities=37% Similarity=0.667 Sum_probs=23.8
Q ss_pred HHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 687 EMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 687 e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
++..++..+|.+ ++|.|++.+|...++
T Consensus 1 ~~~~~f~~~d~~-~~g~i~~~e~~~~~~ 27 (29)
T smart00054 1 ELKEAFRLFDKD-GDGKIDFEEFKDLLK 27 (29)
T ss_pred CHHHHHHHHCCC-CCCcEeHHHHHHHHH
Confidence 367789999999 999999999999874
No 100
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=93.53 E-value=0.074 Score=39.52 Aligned_cols=31 Identities=26% Similarity=0.620 Sum_probs=27.3
Q ss_pred HHHHHHHHhcccccCCCCCcCHHHHHHHHHh
Q psy13767 648 KKSRLTDLFRKMDKNNDGLIPREDFVDGIIK 678 (801)
Q Consensus 648 ~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~ 678 (801)
...++..+|+.||.|++|.|+..||...+..
T Consensus 23 s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 23 SEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp CHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 3466999999999999999999999998763
No 101
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=92.99 E-value=23 Score=41.52 Aligned_cols=95 Identities=13% Similarity=0.161 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHH
Q psy13767 422 EARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERLRN-HLRSLQD 500 (801)
Q Consensus 422 ~l~~~l~~~~~~~~~l~~~~~~v~~l~~~~~~Ll~~~~p~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~-~~~~~~~ 500 (801)
.+-.+-.+.+-+...|+-.=.+++.....|..+. |.....|..+-+.|..+|..|..-+..-+..|-+ -+. .-
T Consensus 200 ~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~f----p~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~--~v 273 (683)
T PF08580_consen 200 SLLALFARMQPLRASLDFLPMRIEEFQSRAESIF----PSACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWN--IV 273 (683)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HH
Confidence 4455555566666677666667777777776543 4555688999999999999999999886666544 333 24
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc
Q psy13767 501 LDSLLEELLEWLAKCESHLLNL 522 (801)
Q Consensus 501 f~~~~~el~~Wl~~~e~~l~~~ 522 (801)
|.....++..-++..|..+..+
T Consensus 274 Fr~l~~q~~~m~esver~~~kl 295 (683)
T PF08580_consen 274 FRNLGRQAQKMCESVERSLSKL 295 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888876654
No 102
>PRK02224 chromosome segregation protein; Provisional
Probab=92.82 E-value=31 Score=42.53 Aligned_cols=65 Identities=26% Similarity=0.431 Sum_probs=34.3
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 285 EIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEFH 355 (801)
Q Consensus 285 ~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~l~~~~~~~ 355 (801)
.+..++......++.+......+-.. .....++..+..+++.+......+...++........+.
T Consensus 479 ~~~~~~~~le~~l~~~~~~~e~l~~~------~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~ 543 (880)
T PRK02224 479 ELEAELEDLEEEVEEVEERLERAEDL------VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELR 543 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33334444444454444433333321 222556667777777777777766666666654333333
No 103
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=92.79 E-value=0.037 Score=43.15 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=24.9
Q ss_pred HHHHHHHhCCCCCCCcccHHHHHHHhCCC
Q psy13767 688 MGAVADMFDHDYNPGLIDWKEFIAALRPD 716 (801)
Q Consensus 688 ~~~~~~~~d~d~~~g~i~~~ef~~~~~~~ 716 (801)
+..+|..+|.| ++|+|+++||..++...
T Consensus 2 l~~~F~~~D~d-~~G~i~~~el~~~~~~~ 29 (66)
T PF13499_consen 2 LKEAFKKFDKD-GDGYISKEELRRALKHL 29 (66)
T ss_dssp HHHHHHHHSTT-SSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHcCC-ccCCCCHHHHHHHHHHh
Confidence 57889999999 99999999999998644
No 104
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=91.71 E-value=0.31 Score=35.16 Aligned_cols=44 Identities=25% Similarity=0.481 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHh--HHHHHHHHHhcccccCCCCCcCHHHHHHHHHh
Q psy13767 634 WDDWRKRFLRFMN--HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIK 678 (801)
Q Consensus 634 f~~~~~~~l~~~~--~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~ 678 (801)
|.+... ++..|+ -.......+|+..|++++|.+..+||....+.
T Consensus 4 f~Evk~-lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 4 FKEVKK-LLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp HHHHHH-HHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred HHHHHH-HHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 444433 666665 22344567999999999999999999887764
No 105
>KOG2643|consensus
Probab=91.05 E-value=0.19 Score=52.96 Aligned_cols=81 Identities=25% Similarity=0.409 Sum_probs=58.2
Q ss_pred cCCHHHHHHHHHHHHhHHHHHHHHHhcccccCCCCCcCHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCCCCCcccHHHH
Q psy13767 631 NFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGII-KTKFETSKLEMGAVADMFDHDYNPGLIDWKEF 709 (801)
Q Consensus 631 ~f~f~~~~~~~l~~~~~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~-~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef 709 (801)
.+.+++|.. |-.++.+ ...+--+...+- ...+.|+..+|..+.. ..|.++++.-++-+|..||.| +||.++++||
T Consensus 372 gISl~Ef~~-Ff~Fl~~-l~dfd~Al~fy~-~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N-~Dg~LS~~EF 447 (489)
T KOG2643|consen 372 GISLQEFKA-FFRFLNN-LNDFDIALRFYH-MAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDEN-NDGTLSHKEF 447 (489)
T ss_pred CcCHHHHHH-HHHHHhh-hhHHHHHHHHHH-HcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccC-CCCcccHHHH
Confidence 466676655 6555532 222222222222 2348899999988776 579999988788899999999 9999999999
Q ss_pred HHHhCC
Q psy13767 710 IAALRP 715 (801)
Q Consensus 710 ~~~~~~ 715 (801)
++.|+.
T Consensus 448 l~Vmk~ 453 (489)
T KOG2643|consen 448 LAVMKR 453 (489)
T ss_pred HHHHHH
Confidence 999863
No 106
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=90.69 E-value=0.34 Score=39.80 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=52.3
Q ss_pred HHHHHhcccccCCCCCcCHHHHHHHHHhc-CC-CCCHHHHHHHHHHhCCC---CCCCcccHHHHHHHhCCCc
Q psy13767 651 RLTDLFRKMDKNNDGLIPREDFVDGIIKT-KF-ETSKLEMGAVADMFDHD---YNPGLIDWKEFIAALRPDW 717 (801)
Q Consensus 651 ~~~~~F~~~D~d~~g~i~~~e~~~~l~~~-g~-~~~~~e~~~~~~~~d~d---~~~g~i~~~ef~~~~~~~~ 717 (801)
++..+|..+-. +.+.++.++|...|... |. ..+..++..++..|..+ ...+.++++.|...|.++.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 46788999955 78999999999999754 44 45899999999988554 1379999999999996554
No 107
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=90.44 E-value=62 Score=41.31 Aligned_cols=12 Identities=33% Similarity=0.404 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy13767 428 AEHEKFLRELAE 439 (801)
Q Consensus 428 ~~~~~~~~~l~~ 439 (801)
.+.+.+..++..
T Consensus 681 ~~l~~l~~~l~~ 692 (1164)
T TIGR02169 681 ERLEGLKRELSS 692 (1164)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 108
>KOG0161|consensus
Probab=90.28 E-value=72 Score=41.82 Aligned_cols=14 Identities=7% Similarity=0.169 Sum_probs=5.3
Q ss_pred HHHHHhhHHHHHHH
Q psy13767 27 KMLADRQHSMSSLF 40 (801)
Q Consensus 27 ~el~~~~~~v~~l~ 40 (801)
.++...+..++.+.
T Consensus 936 ~e~~~l~~~~~~~E 949 (1930)
T KOG0161|consen 936 QEVQELKEQLEELE 949 (1930)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 109
>KOG0161|consensus
Probab=89.70 E-value=80 Score=41.46 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy13767 243 EKFWSELQSVMATLRDL 259 (801)
Q Consensus 243 ~~f~~~~~~l~~Wl~~~ 259 (801)
.+|..++..+..|+.+.
T Consensus 1044 rkle~el~~~~e~~~~~ 1060 (1930)
T KOG0161|consen 1044 RKLEGELKDLQESIEEL 1060 (1930)
T ss_pred HHHHHHHHHhhhHHHHH
Confidence 46666666666666643
No 110
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=89.62 E-value=0.87 Score=42.22 Aligned_cols=68 Identities=16% Similarity=0.282 Sum_probs=48.4
Q ss_pred HhcccccCCCCCcCHHHHHHHHHhcCCCC---------------------------------------------------
Q psy13767 655 LFRKMDKNNDGLIPREDFVDGIIKTKFET--------------------------------------------------- 683 (801)
Q Consensus 655 ~F~~~D~d~~g~i~~~e~~~~l~~~g~~~--------------------------------------------------- 683 (801)
=...||.|+||.|.+-|--.+++.+|+..
T Consensus 12 HvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~eG 91 (174)
T PF05042_consen 12 HVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDTEG 91 (174)
T ss_pred hhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccccCC
Confidence 34568999999999999988888877765
Q ss_pred --CHHHHHHHHHHhCCCCCCCcccHHHHHHHhCCCcccCCCC
Q psy13767 684 --SKLEMGAVADMFDHDYNPGLIDWKEFIAALRPDWEEKKPN 723 (801)
Q Consensus 684 --~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~~~~~~~~~~ 723 (801)
.+...++++.+++.. +.+.+++.|...++.....+.+|.
T Consensus 92 rFvp~kFe~iF~kya~~-~~d~LT~~E~~~m~~~nr~~~D~~ 132 (174)
T PF05042_consen 92 RFVPQKFEEIFSKYAKT-GPDALTLRELWRMLKGNRNANDPF 132 (174)
T ss_pred cCCHHHHHHHHHHhCCC-CCCCcCHHHHHHHHHhccccCCcc
Confidence 344566677777766 666777777777766555444443
No 111
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=88.70 E-value=0.43 Score=40.42 Aligned_cols=65 Identities=6% Similarity=-0.004 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCCCCCcccHHHHHHHhCCCcccCCCCCchhhhhHHHHhhhcccccccccceeEcCCCccccCCcchhHH
Q psy13767 687 EMGAVADMFDHDYNPGLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVFQVGEGKYRFGDSQKLRL 766 (801)
Q Consensus 687 e~~~~~~~~d~d~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~c~~~~~~~v~~~~~g~y~~g~~~~~~~ 766 (801)
++..+|..||.| ++|.|++++|..+|+... .....+.+++.... .-++|...|.++ +.+
T Consensus 11 ~l~~~F~~~D~d-~~G~Is~~el~~~l~~~~------~~~~ev~~i~~~~d------------~~~~g~I~~~eF--~~~ 69 (96)
T smart00027 11 KYEQIFRSLDKN-QDGTVTGAQAKPILLKSG------LPQTLLAKIWNLAD------------IDNDGELDKDEF--ALA 69 (96)
T ss_pred HHHHHHHHhCCC-CCCeEeHHHHHHHHHHcC------CCHHHHHHHHHHhc------------CCCCCCcCHHHH--HHH
Confidence 467788899999 999999999999985421 11233444443221 124677888887 555
Q ss_pred HhhhcC
Q psy13767 767 VRILRS 772 (801)
Q Consensus 767 ~r~~~~ 772 (801)
+..+..
T Consensus 70 ~~~~~~ 75 (96)
T smart00027 70 MHLIYR 75 (96)
T ss_pred HHHHHH
Confidence 555553
No 112
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=88.57 E-value=0.5 Score=39.24 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=42.1
Q ss_pred HHHHHHHHhCC-CCCCCcccHHHHHHHhCCCcccCCCCCchhhhhHHHHhhhcccccccccceeEcCCCccccCCc
Q psy13767 687 EMGAVADMFDH-DYNPGLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVFQVGEGKYRFGDS 761 (801)
Q Consensus 687 e~~~~~~~~d~-d~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~c~~~~~~~v~~~~~g~y~~g~~ 761 (801)
.+..+|..||. + |+|+|+..||...|...... ..++...+++++.. +..-++|+..|.|+
T Consensus 9 ~l~~~F~~fd~~~-~~g~i~~~ELk~ll~~elg~--~ls~~~~v~~mi~~------------~D~d~DG~I~F~EF 69 (89)
T cd05022 9 TLVSNFHKASVKG-GKESLTASEFQELLTQQLPH--LLKDVEGLEEKMKN------------LDVNQDSKLSFEEF 69 (89)
T ss_pred HHHHHHHHHhCCC-CCCeECHHHHHHHHHHHhhh--hccCHHHHHHHHHH------------hCCCCCCCCcHHHH
Confidence 46778889999 9 99999999999999652211 12222456666652 33347899999887
No 113
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=88.47 E-value=0.51 Score=39.69 Aligned_cols=67 Identities=7% Similarity=0.093 Sum_probs=41.8
Q ss_pred HHHHHHHHhC-CCCCCC-cccHHHHHHHhCCCcc-cCCCCCchhhhhHHHHhhhcccccccccceeEcCCCccccCCcch
Q psy13767 687 EMGAVADMFD-HDYNPG-LIDWKEFIAALRPDWE-EKKPNTESEKIHDEVKRLVQLCTCRQKFRVFQVGEGKYRFGDSQK 763 (801)
Q Consensus 687 e~~~~~~~~d-~d~~~g-~i~~~ef~~~~~~~~~-~~~~~~~~~~i~~~v~~~~~~c~~~~~~~v~~~~~g~y~~g~~~~ 763 (801)
.+..+|..|| .| |+| .|+..||..+|..... ..........+++++.. +..-++|+..|.|+
T Consensus 11 ~~~~~F~~~dd~d-gdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~e------------lD~n~dG~Idf~EF-- 75 (93)
T cd05026 11 TLIRIFHNYSGKE-GDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMND------------LDSNKDNEVDFNEF-- 75 (93)
T ss_pred HHHHHHHHHHccC-CCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHH------------hCCCCCCCCCHHHH--
Confidence 3566688888 79 998 5999999999854211 00111123446655552 22346899999888
Q ss_pred hHHHh
Q psy13767 764 LRLVR 768 (801)
Q Consensus 764 ~~~~r 768 (801)
+.++.
T Consensus 76 ~~l~~ 80 (93)
T cd05026 76 VVLVA 80 (93)
T ss_pred HHHHH
Confidence 44443
No 114
>PRK03918 chromosome segregation protein; Provisional
Probab=87.94 E-value=77 Score=39.05 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=11.1
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHH
Q psy13767 284 KEIKAEIDQTKPEVEQCRASGQKLM 308 (801)
Q Consensus 284 ~~l~~el~~~~~~~~~l~~~~~~L~ 308 (801)
..+...+......+..+...-..|-
T Consensus 408 ~~l~~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 408 SKITARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455554444443
No 115
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=87.81 E-value=49 Score=36.63 Aligned_cols=185 Identities=15% Similarity=0.181 Sum_probs=92.8
Q ss_pred HHHhhHHHHHHHHhHHHHhhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 29 LADRQHSMSSLFQMGNEVAANADPAERKAIERQLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSE 108 (801)
Q Consensus 29 l~~~~~~v~~l~~~g~~L~~~~~~~~~~~i~~~l~~L~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e 108 (801)
|......++.+...-..|+..- ..=...+......|.+|...+..+...+.+++.. +...++.+..=+...+
T Consensus 113 l~~iE~~i~~il~~l~~Lv~sE-----ekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~---lEk~Le~i~~~l~qf~ 184 (570)
T COG4477 113 LTLIEEDIEQILEDLNELVESE-----EKNSEEIDHVLELYEELRRDVLANRHQYGEAAPE---LEKKLENIEEELSQFV 184 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH---HHHHHHHHHHHHHHHH
Confidence 3334444444444444444331 1122344445577777777777777666665554 5555555555555554
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhcccChhhhhhHhhhHHhHHHHHHHHHHHHhhh
Q psy13767 109 KKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNL 188 (801)
Q Consensus 109 ~~l~~~~~~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r 188 (801)
. +.+ +.|+-.+..-|...+.....|.+.-..|-+|.... ...+-++++.|...|..|...-
T Consensus 185 ~-lt~----~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~-----------~~~lP~ql~~Lk~Gyr~m~~~g--- 245 (570)
T COG4477 185 E-LTS----SGDYIEAREVLEEAEEHMIALRSIMERIPSLLAEL-----------QTELPGQLQDLKAGYRDMKEEG--- 245 (570)
T ss_pred H-hcc----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhchHHHHHHHHHHHHHHHcc---
Confidence 2 322 33443444444444444444443333333333322 2345567788888888877641
Q ss_pred hhhhhhhhccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 189 GQYAFLYNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATL 256 (801)
Q Consensus 189 ~~~LW~~~~l~Ls~~~~~~~~i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl 256 (801)
-+.....|.++++.|..........+ ..-.|++|-.-.+.....++.+-+-+
T Consensus 246 --------------Y~l~~~~id~~~~~L~~~l~~~~~~l--~~Leld~aeeel~~I~e~ie~lYd~l 297 (570)
T COG4477 246 --------------YHLEHVNIDSRLERLKEQLVENSELL--TQLELDEAEEELGLIQEKIESLYDLL 297 (570)
T ss_pred --------------CCcccccHHHHHHHHHHHHHHHHhHH--HHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 12245667777777777665444333 22334444443334444444444433
No 116
>KOG3866|consensus
Probab=87.55 E-value=0.87 Score=45.56 Aligned_cols=60 Identities=20% Similarity=0.330 Sum_probs=44.2
Q ss_pred HHhcccccCCCCCcCHHHHHHHHHh----c-CCCCCHHHHH-----------HHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 654 DLFRKMDKNNDGLIPREDFVDGIIK----T-KFETSKLEMG-----------AVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 654 ~~F~~~D~d~~g~i~~~e~~~~l~~----~-g~~~~~~e~~-----------~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
.+|...|.|+||.++-.|+-+.+.. . ...-.+++|. .++..+|+| .|.+|+.+||+....
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtN-qDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTN-QDRLVTLEEFLNDTD 323 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccc-hhhhhhHHHHHhhhh
Confidence 5799999999999999998776532 2 2222222232 256789999 999999999999764
No 117
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=87.49 E-value=0.47 Score=39.36 Aligned_cols=62 Identities=11% Similarity=0.185 Sum_probs=40.8
Q ss_pred HHHHHHHHhC-CCCCCC-cccHHHHHHHhCCCccc-CCCCCchhhhhHHHHhhhcccccccccceeEcCCCccccCCc
Q psy13767 687 EMGAVADMFD-HDYNPG-LIDWKEFIAALRPDWEE-KKPNTESEKIHDEVKRLVQLCTCRQKFRVFQVGEGKYRFGDS 761 (801)
Q Consensus 687 e~~~~~~~~d-~d~~~g-~i~~~ef~~~~~~~~~~-~~~~~~~~~i~~~v~~~~~~c~~~~~~~v~~~~~g~y~~g~~ 761 (801)
.+..+|..|| .| |+| .|+.++|...|+...+. .....+.+.++..+.. +..-++|+..|.++
T Consensus 9 ~l~~aF~~fD~~d-gdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~------------~D~n~dG~v~f~eF 73 (88)
T cd05027 9 ALIDVFHQYSGRE-GDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMET------------LDSDGDGECDFQEF 73 (88)
T ss_pred HHHHHHHHhcccC-CCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHH------------hCCCCCCcCcHHHH
Confidence 5778888998 79 999 59999999999641110 0111223446666652 23336788888887
No 118
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=85.98 E-value=1.1 Score=39.23 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHH
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGII 677 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~ 677 (801)
.....+..+|..+|.|+||.||.+||..++.
T Consensus 77 ~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 77 PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 3345667899999999999999999999984
No 119
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=84.94 E-value=1.7 Score=33.55 Aligned_cols=46 Identities=26% Similarity=0.379 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHhHHHHHHHHHhcccccCCCCCcCHHHHHHHHHh
Q psy13767 632 FSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIK 678 (801)
Q Consensus 632 f~f~~~~~~~l~~~~~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~ 678 (801)
++..++.. ++..+......+..+|+.+|.+++|.|+..||...+..
T Consensus 16 i~~~el~~-~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 16 ISGDEARP-FLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred CcHHHHHH-HHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 34444444 22223334566888999999999999999999887754
No 120
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=84.66 E-value=2.4 Score=35.13 Aligned_cols=31 Identities=29% Similarity=0.591 Sum_probs=27.2
Q ss_pred HHHHHHHhcccccCCCCCcCHHHHHHHHHhc
Q psy13767 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIKT 679 (801)
Q Consensus 649 ~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~ 679 (801)
...+..+|+.+|.|++|.|+.++|...+..+
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5678899999999999999999999887643
No 121
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=84.42 E-value=1.3 Score=36.81 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCC--CCCCCcccHHHHHHHhCC
Q psy13767 686 LEMGAVADMFDH--DYNPGLIDWKEFIAALRP 715 (801)
Q Consensus 686 ~e~~~~~~~~d~--d~~~g~i~~~ef~~~~~~ 715 (801)
.++..+|..||. | ++|.|++.+|..+++.
T Consensus 8 ~~l~~~F~~~D~~~~-~~G~Is~~el~~~l~~ 38 (88)
T cd00213 8 ETIIDVFHKYSGKEG-DKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHHhhccC-CCCcCcHHHHHHHHHH
Confidence 457778999999 9 9999999999999853
No 122
>KOG2243|consensus
Probab=83.99 E-value=1.6 Score=51.80 Aligned_cols=60 Identities=20% Similarity=0.484 Sum_probs=52.0
Q ss_pred HHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhCC
Q psy13767 654 DLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRP 715 (801)
Q Consensus 654 ~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~~ 715 (801)
+.|+.+|+||.|.|+..+|..+|...+ ..+..|++-++.-...| .+.+.+|++|+...+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~d-end~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEAD-ENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccC-ccccccHHHHHHHhcC
Confidence 448999999999999999999998544 35788899999888899 9999999999997763
No 123
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=83.94 E-value=1.4e+02 Score=38.21 Aligned_cols=18 Identities=11% Similarity=-0.017 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy13767 469 WITIIQSRWEEVSSWAKQ 486 (801)
Q Consensus 469 ~~~~l~~rw~~l~~~~~~ 486 (801)
.+..+..+...|...+.+
T Consensus 966 ~~~~l~~~i~~lg~aiee 983 (1179)
T TIGR02168 966 DEEEARRRLKRLENKIKE 983 (1179)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 344555555555554433
No 124
>KOG2562|consensus
Probab=83.91 E-value=2 Score=45.97 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=41.0
Q ss_pred HHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCCCCCCcccHHHHHHHhC
Q psy13767 653 TDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMF----DHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 653 ~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~----d~d~~~g~i~~~ef~~~~~ 714 (801)
-.-|-.+|+|.||.|+.++|...-- ..++.-=++++|+.+ -.- ++|.|+|++|+-.+-
T Consensus 281 y~kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~-~eGrmdykdFv~Fil 342 (493)
T KOG2562|consen 281 YCKFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVK-VEGRMDYKDFVDFIL 342 (493)
T ss_pred HHHHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceee-ecCcccHHHHHHHHH
Confidence 3447778999999999998876543 334455578888733 333 788899999887553
No 125
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=83.74 E-value=99 Score=36.42 Aligned_cols=116 Identities=14% Similarity=0.262 Sum_probs=68.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC---C---CChHHHHHH
Q psy13767 206 SVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPP---A---VEPKAIQQQ 279 (801)
Q Consensus 206 ~~~~i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~---~---~d~~~~~~~ 279 (801)
....+..+...|...|..|...+..-++.|-+..-. .-|.....++..=++.++..+...... + ...+.+..
T Consensus 236 a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~-~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~- 313 (683)
T PF08580_consen 236 ACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWN-IVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSK- 313 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHH-
Confidence 678888999999999999999998888877765443 355555555555555655554433211 1 12333333
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHcCCCChhHHHHHHH-HHHHHHHHHH
Q psy13767 280 QYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIE-DLDSAWDNVT 334 (801)
Q Consensus 280 l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~-~l~~~w~~l~ 334 (801)
+.+.+..-...+-+-+.. +....|+.. . |..+++ +|..+|..|+
T Consensus 314 --~i~s~~~k~~~~~~~I~k--a~~~sIi~~------g-v~~r~n~~L~~rW~~L~ 358 (683)
T PF08580_consen 314 --QIESKEKKKSHYFPAIYK--ARVLSIIDK------G-VADRLNADLAQRWLELK 358 (683)
T ss_pred --HHHHHHHHHhccHHHHHH--HHHHHhhhh------h-HHHHhhHHHHHHHHHHH
Confidence 333333333333333311 111224431 2 677777 9999999996
No 126
>KOG3555|consensus
Probab=83.12 E-value=1.6 Score=44.61 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=51.9
Q ss_pred HHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhCCC
Q psy13767 648 KKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRPD 716 (801)
Q Consensus 648 ~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~~~ 716 (801)
-+..+..+|..+|.|.||.++..|+...-+ .-++.=|..+|+..|.. .||.|+-.|+.--....
T Consensus 248 CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~-kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 248 CKDSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTY-KDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhccc-ccCccccchhhhhhccC
Confidence 345667779999999999999999977644 33445588899999998 99999999999877543
No 127
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=82.99 E-value=1.3 Score=37.03 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=39.2
Q ss_pred HHHHHHHHHhC-CCCCCCc-ccHHHHHHHhCCCccc-CCCCCchhhhhHHHHhhhcccccccccceeEcCCCccccCCc
Q psy13767 686 LEMGAVADMFD-HDYNPGL-IDWKEFIAALRPDWEE-KKPNTESEKIHDEVKRLVQLCTCRQKFRVFQVGEGKYRFGDS 761 (801)
Q Consensus 686 ~e~~~~~~~~d-~d~~~g~-i~~~ef~~~~~~~~~~-~~~~~~~~~i~~~v~~~~~~c~~~~~~~v~~~~~g~y~~g~~ 761 (801)
.++.++|..|| .| |+|+ |+..||..+|+..... .........++..+... ..-++|...|.++
T Consensus 9 ~~l~~~F~~fDd~d-g~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~------------D~d~~G~I~f~eF 74 (92)
T cd05025 9 ETLINVFHAHSGKE-GDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKEL------------DENGDGEVDFQEF 74 (92)
T ss_pred HHHHHHHHHHhccc-CCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH------------CCCCCCcCcHHHH
Confidence 45888999997 99 9995 9999999998531110 01111223455554422 2225678888877
No 128
>PF13514 AAA_27: AAA domain
Probab=82.69 E-value=1.5e+02 Score=37.66 Aligned_cols=134 Identities=13% Similarity=0.199 Sum_probs=67.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhhCChhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy13767 8 PSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQLNELMN---RFDNLNEGASQRMDALE 84 (801)
Q Consensus 8 ~~~d~~~v~~~l~~~~~l~~el~~~~~~v~~l~~~g~~L~~~~~~~~~~~i~~~l~~L~~---rw~~L~~~~~~r~~~Le 84 (801)
|......+.....+...+...+......+..+...-..+.... . .-.....+..|.. .|......+..+...+.
T Consensus 237 p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~--~-ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~ 313 (1111)
T PF13514_consen 237 PEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDE--E-LLAHAAEIEALEEQRGEYRKARQDLPRLEAELA 313 (1111)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--H-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777888888888888888877766664321 1 1112233333333 34444444444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHccCccHHHHHHH
Q psy13767 85 QAMAVAKQFQDKLTGILDWLDK--SEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDI 151 (801)
Q Consensus 85 ~~~~~~~~f~~~~~~l~~WL~~--~e~~l~~~~~~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~ 151 (801)
..... +..+..=|.. ....+....+.......+..++.++..+...+......+......
T Consensus 314 ~~~~~-------~~~~~~~lg~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~ 375 (1111)
T PF13514_consen 314 ELEAE-------LRALLAQLGPDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAERE 375 (1111)
T ss_pred HHHHH-------HHHHHHhcCCCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 2222221220 011122222222345677777888877777766655555544333
No 129
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=82.42 E-value=2.7 Score=34.94 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=26.3
Q ss_pred HHHHHHHhcccccCCCCCcCHHHHHHHHHh
Q psy13767 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIK 678 (801)
Q Consensus 649 ~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~ 678 (801)
...+..+|+.+|.|+||.|+.+||...+..
T Consensus 51 ~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 51 PGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 367888999999999999999999887764
No 130
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=82.09 E-value=60 Score=32.75 Aligned_cols=99 Identities=23% Similarity=0.229 Sum_probs=66.9
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhhcCcc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 415 SLPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPD-GATVIKHWITIIQSRWEEVSSWAKQREERLRN 493 (801)
Q Consensus 415 ~~~~d~~~l~~~l~~~~~~~~~l~~~~~~v~~l~~~~~~Ll~~~~p~-~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~ 493 (801)
+++.+-..+.-++.+.+.+..++...+.+.- .|+. .+|. .....++++..+....+.+...+..+...|+.
T Consensus 46 ~l~~s~~ql~ll~~~~k~L~aE~~qwqk~~p-------eii~-~n~~VL~~lgkeelqkl~~eLe~vLs~~q~KnekLke 117 (268)
T PF11802_consen 46 TLTDSDAQLSLLMMRVKCLTAELEQWQKRTP-------EIIP-LNPEVLLTLGKEELQKLISELEMVLSTVQSKNEKLKE 117 (268)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhcCC-------CcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666667777777666654433 2332 1222 12456788888999999999999999999998
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13767 494 HLRSLQDLDSLLEELLEWLAKCESHLLN 521 (801)
Q Consensus 494 ~~~~~~~f~~~~~el~~Wl~~~e~~l~~ 521 (801)
.+..-+.+.....++..-+......+..
T Consensus 118 ~LerEq~wL~Eqqql~~sL~~r~~elk~ 145 (268)
T PF11802_consen 118 DLEREQQWLDEQQQLLESLNKRHEELKN 145 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777777777766666665554
No 131
>KOG1029|consensus
Probab=81.70 E-value=1.7 Score=49.10 Aligned_cols=65 Identities=22% Similarity=0.389 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
...-.++.+|+.+|+..+|+++...-+.+|.-.|.+. ..+..+-.--|.| |||.++-+||+-+|.
T Consensus 192 ~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq--~~LA~IW~LsDvd-~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQ--NQLAHIWTLSDVD-GDGKLSADEFILAMH 256 (1118)
T ss_pred hhhhHHHHHhhhcccccccccccHHHHHHHHhcCCch--hhHhhheeeeccC-CCCcccHHHHHHHHH
Confidence 4455688999999999999999999999998777654 3466666667999 999999999998774
No 132
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=80.85 E-value=2.9 Score=35.13 Aligned_cols=50 Identities=18% Similarity=0.354 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHHHH------hHHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcC
Q psy13767 631 NFSWDDWRKRFLRFM------NHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTK 680 (801)
Q Consensus 631 ~f~f~~~~~~~l~~~------~~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g 680 (801)
.++..+++..+...+ ......+..+|+.+|.|++|.|+.++|...+...+
T Consensus 26 ~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 26 TLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred eECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 456666666332211 12346788999999999999999999998887544
No 133
>KOG1955|consensus
Probab=80.75 E-value=3.6 Score=44.15 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
+....+..-|+.+..|-+|.|+-.--+.++...+ +.-.|+..|-+--|.| .||-+++.||+++++
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d-~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVD-RDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccC-ccccccHHHHHhhHh
Confidence 5556677789999999999999988888888655 4556788888888999 999999999999986
No 134
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=80.66 E-value=1.8 Score=35.96 Aligned_cols=47 Identities=13% Similarity=0.273 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHH--Hh--HHHHHHHHHhcccccCCCCCcCHHHHHHHHHh
Q psy13767 632 FSWDDWRKRFLRF--MN--HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIK 678 (801)
Q Consensus 632 f~f~~~~~~~l~~--~~--~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~ 678 (801)
++..++++.+... +. -...++.++|+.+|.|++|.|+.+||...+..
T Consensus 29 Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 29 LSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred ECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 4555566633221 22 23467888999999999999999999887754
No 135
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=77.19 E-value=2.2e+02 Score=36.34 Aligned_cols=36 Identities=17% Similarity=0.384 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13767 77 SQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKD 113 (801)
Q Consensus 77 ~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~l~~ 113 (801)
.+|+..++++... ..|.....+...=|..++..+..
T Consensus 155 ~err~iiEEaaGv-~~y~~r~~ea~~~L~~~~~nl~~ 190 (1163)
T COG1196 155 EERRKLIEEAAGV-SKYKERKEEAERKLERTEENLER 190 (1163)
T ss_pred HHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666553 44666656665555555554433
No 136
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=76.96 E-value=1.4e+02 Score=33.94 Aligned_cols=28 Identities=4% Similarity=0.056 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 464 TVIKHWITIIQSRWEEVSSWAKQREERL 491 (801)
Q Consensus 464 ~~i~~~~~~l~~rw~~l~~~~~~r~~~L 491 (801)
..+...+..+...|......+...+.+.
T Consensus 345 ~~Le~~~~~l~~~~~~~A~~Ls~~R~~~ 372 (557)
T COG0497 345 EALEKEVKKLKAELLEAAEALSAIRKKA 372 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666665555544433
No 137
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=76.93 E-value=86 Score=31.53 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhHH
Q psy13767 21 EQKFLKKMLADRQHSMSSLFQMGN 44 (801)
Q Consensus 21 ~~~~l~~el~~~~~~v~~l~~~g~ 44 (801)
+...+..+++.....+..+...-.
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~ 25 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLK 25 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666665555433
No 138
>KOG0933|consensus
Probab=75.43 E-value=1.9e+02 Score=34.84 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=26.4
Q ss_pred HhhhcccccccccceeEcCCCccccCCcchhHHHhhhcCc
Q psy13767 734 KRLVQLCTCRQKFRVFQVGEGKYRFGDSQKLRLVRILRST 773 (801)
Q Consensus 734 ~~~~~~c~~~~~~~v~~~~~g~y~~g~~~~~~~~r~~~~~ 773 (801)
.+.+....-.+.|=|....+|-|...+. +.=+||...+
T Consensus 1126 G~mIkthF~~sQFIVVSLKeGMF~NANv--LFrtrF~DG~ 1163 (1174)
T KOG0933|consen 1126 GRMIKTHFTHSQFIVVSLKEGMFNNANV--LFRTRFVDGV 1163 (1174)
T ss_pred HHHHHhhCCCCeEEEEEchhhccccchh--hheeeeecCc
Confidence 3444455556788888888998888875 5557777753
No 139
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=74.15 E-value=2.3e+02 Score=35.07 Aligned_cols=129 Identities=15% Similarity=0.232 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhcccChhhhhhHhhhHHhHHHHHHHHHHHHhh---hhhhhhhhh
Q psy13767 120 DEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDN---LGQYAFLYN 196 (801)
Q Consensus 120 d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~---r~~~LW~~~ 196 (801)
........+..++.+...+......+..+......+.. ........++.....+..++..+...+.. ....+
T Consensus 313 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~---- 387 (908)
T COG0419 313 LLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAE-EKNELAKLLEERLKELEERLEELEKELEKALERLKQL---- 387 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----
Confidence 34455555666666666666655555555555444432 11122333444444444444444443321 11000
Q ss_pred ccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 197 QLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQ 260 (801)
Q Consensus 197 ~l~Ls~~~~~~~~i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e 260 (801)
.........+...+......+..........+.+.......+...+..+..++...+
T Consensus 388 -------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 444 (908)
T COG0419 388 -------EEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLE 444 (908)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001122233333334444444444444444444444444566666666777766643
No 140
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=74.05 E-value=11 Score=35.17 Aligned_cols=60 Identities=13% Similarity=0.247 Sum_probs=46.1
Q ss_pred HHhcccccCCCCCcCHHHHHHHHHhcCC---CCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 654 DLFRKMDKNNDGLIPREDFVDGIIKTKF---ETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 654 ~~F~~~D~d~~g~i~~~e~~~~l~~~g~---~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
..|..|-+.+...++..-|...++.+|+ .++..+++-+|..+-.. +...|+|++|+.+|.
T Consensus 6 ~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k-~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 6 KAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAK-GARKITFEQFLEALA 68 (154)
T ss_dssp HHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-S-S-SEEEHHHHHHHHH
T ss_pred HHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcC-CCcccCHHHHHHHHH
Confidence 3454555666678999999999998754 57888999999998777 777899999999885
No 141
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=72.82 E-value=4.1 Score=33.79 Aligned_cols=31 Identities=16% Similarity=0.317 Sum_probs=26.3
Q ss_pred HHHHHHHHhcccccCCCCCcCHHHHHHHHHh
Q psy13767 648 KKSRLTDLFRKMDKNNDGLIPREDFVDGIIK 678 (801)
Q Consensus 648 ~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~ 678 (801)
....+..+|+.+|.|+||.|+..||...+-.
T Consensus 46 d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 46 DPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3456888999999999999999999887653
No 142
>KOG0751|consensus
Probab=72.49 E-value=4 Score=43.94 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHHHHhHHHHHHHHHhcccccCCCCCcCHHHHHHHHHhc
Q psy13767 631 NFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKT 679 (801)
Q Consensus 631 ~f~f~~~~~~~l~~~~~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~ 679 (801)
-++|++|+- |-.++.........+|..||+.++|.++.+++.+.+..+
T Consensus 90 lisf~eF~a-fe~~lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 90 LISFQEFRA-FESVLCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred cccHHHHHH-HHhhccCchHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 367777765 666665556677889999999999999999999888654
No 143
>KOG0996|consensus
Probab=72.27 E-value=2.5e+02 Score=34.64 Aligned_cols=69 Identities=10% Similarity=0.114 Sum_probs=37.6
Q ss_pred CCCcccHHHHHHHhCCCcccCCCCCchhhhhHHH--------HhhhcccccccccceeEcCCCccccCCcchhHHHhhhc
Q psy13767 700 NPGLIDWKEFIAALRPDWEEKKPNTESEKIHDEV--------KRLVQLCTCRQKFRVFQVGEGKYRFGDSQKLRLVRILR 771 (801)
Q Consensus 700 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~i~~~v--------~~~~~~c~~~~~~~v~~~~~g~y~~g~~~~~~~~r~~~ 771 (801)
|..+++-=-|+-||+.-+. .|.+=.|.||..+ ..++..-+--..|=|.....+=|-+++. ++-|+-..
T Consensus 1199 GEKTLSSLALVFALH~YkP--TPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIISLRnnMFELa~r--LvGIYKtd 1274 (1293)
T KOG0996|consen 1199 GEKTLSSLALVFALHHYKP--TPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELANR--LVGIYKTD 1274 (1293)
T ss_pred chhHHHHHHHHHHHHccCC--CCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEEehhhHHHHHhh--heeeEeec
Confidence 4445555567777763221 2344444555543 3344444455667777667766666665 66666444
Q ss_pred C
Q psy13767 772 S 772 (801)
Q Consensus 772 ~ 772 (801)
+
T Consensus 1275 n 1275 (1293)
T KOG0996|consen 1275 N 1275 (1293)
T ss_pred C
Confidence 3
No 144
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=72.07 E-value=1.7e+02 Score=32.65 Aligned_cols=123 Identities=12% Similarity=0.186 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC--ChHHHHHHHHHHHH----
Q psy13767 212 KKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAV--EPKAIQQQQYALKE---- 285 (801)
Q Consensus 212 ~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~--d~~~~~~~l~~~~~---- 285 (801)
.++......|..+...+..+...+.++... +...++.+..=+..-...-.+.+++.. -++.++.++..+..
T Consensus 139 ~~i~~~~ely~elr~~vl~n~~~~Ge~~~~---lEk~Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~ 215 (570)
T COG4477 139 EEIDHVLELYEELRRDVLANRHQYGEAAPE---LEKKLENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMER 215 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHH---HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777777765543 455555555555544333322222211 12223333333333
Q ss_pred ---HHHHHhc-cchhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy13767 286 ---IKAEIDQ-TKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALF 337 (801)
Q Consensus 286 ---l~~el~~-~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~~w~~l~~~~ 337 (801)
|-.+++. .-.+++.|..-.++|.....+-+.-.|..++..|.........++
T Consensus 216 IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l 271 (570)
T COG4477 216 IPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELL 271 (570)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHhHH
Confidence 3333322 345667777777788776555556677777777777666554443
No 145
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=71.79 E-value=62 Score=28.54 Aligned_cols=79 Identities=14% Similarity=0.304 Sum_probs=53.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH----Hc--------CCCChhHHHHHHHHHHHHHHHHHHHH
Q psy13767 270 AVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMK----IC--------GEPDKPEVKKHIEDLDSAWDNVTALF 337 (801)
Q Consensus 270 ~~d~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~----~~--------~~~~~~~i~~~l~~l~~~w~~l~~~~ 337 (801)
+.+...++.+-...+.++.++...+..+..+...-..+.. .. .....+.+...+..++.+|+.+..+.
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666667777777777777777776554333321 10 12346678888999999999999998
Q ss_pred HHHHHHHHHHH
Q psy13767 338 AKREENLIHAM 348 (801)
Q Consensus 338 ~~r~~~L~~~l 348 (801)
.++....++.-
T Consensus 92 GEK~E~veEL~ 102 (120)
T PF12325_consen 92 GEKSEEVEELR 102 (120)
T ss_pred cchHHHHHHHH
Confidence 88888777654
No 146
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=71.34 E-value=4.6 Score=29.94 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=23.8
Q ss_pred HHHHHHHhCCCCCCCcccHHHHHHHhCC
Q psy13767 688 MGAVADMFDHDYNPGLIDWKEFIAALRP 715 (801)
Q Consensus 688 ~~~~~~~~d~d~~~g~i~~~ef~~~~~~ 715 (801)
+..++..+|.+ ++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~-~~g~l~~~e~~~~l~~ 28 (63)
T cd00051 2 LREAFRLFDKD-GDGTISADELKAALKS 28 (63)
T ss_pred HHHHHHHhCCC-CCCcCcHHHHHHHHHH
Confidence 56788899999 9999999999999853
No 147
>KOG2562|consensus
Probab=71.05 E-value=5.1 Score=43.06 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=47.3
Q ss_pred HHHHhc----ccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHH
Q psy13767 652 LTDLFR----KMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEF 709 (801)
Q Consensus 652 ~~~~F~----~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef 709 (801)
+.++|. .+=.-.+|+++.++|...+.++...-+..-++-.|+-+|.+ |+|.++-.|.
T Consensus 313 vdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld-~~G~Lt~~el 373 (493)
T KOG2562|consen 313 VDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLD-GDGILTLNEL 373 (493)
T ss_pred HHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeecc-CCCcccHHHH
Confidence 445666 33445789999999999999988888888899999999999 9999996653
No 148
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=70.77 E-value=86 Score=28.71 Aligned_cols=95 Identities=9% Similarity=0.231 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHHHHH
Q psy13767 211 KKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEI 290 (801)
Q Consensus 211 ~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el 290 (801)
..+...+......+..........+............+++.+..-|......+...... ...++.+-++.+.++.++
T Consensus 13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~---~~~~E~l~rriq~LEeel 89 (143)
T PF12718_consen 13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR---KSNAEQLNRRIQLLEEEL 89 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHhHHHHHhhHHHHHHHH
Confidence 34444444444444444444444444444444566667777777777766666544322 222335556677777777
Q ss_pred hccchhHHHHHHHHHHHH
Q psy13767 291 DQTKPEVEQCRASGQKLM 308 (801)
Q Consensus 291 ~~~~~~~~~l~~~~~~L~ 308 (801)
......+......-+..-
T Consensus 90 e~ae~~L~e~~ekl~e~d 107 (143)
T PF12718_consen 90 EEAEKKLKETTEKLREAD 107 (143)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777666655555444333
No 149
>KOG0169|consensus
Probab=69.69 E-value=7.4 Score=44.67 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=51.9
Q ss_pred HHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHh
Q psy13767 651 RLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAAL 713 (801)
Q Consensus 651 ~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~ 713 (801)
.+..+|...|++++|.++..+...+++.+...+...-+..++...+.. ++|.+...+|...-
T Consensus 137 wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~-~~~k~~~~~~~~~~ 198 (746)
T KOG0169|consen 137 WIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNS-QTGKLEEEEFVKFR 198 (746)
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhh-ccceehHHHHHHHH
Confidence 355778889999999999999999988888888888888888888877 88889988888864
No 150
>KOG4666|consensus
Probab=68.98 E-value=9.3 Score=39.04 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=46.1
Q ss_pred HHHHHHhcccccCCCCCcCHHHHHHHHHh-cCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 650 SRLTDLFRKMDKNNDGLIPREDFVDGIIK-TKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 650 ~~~~~~F~~~D~d~~g~i~~~e~~~~l~~-~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
..+...|..||.+++|.++..|-...+.. +|.+.+..-|+-.++.|+.+ .||.+.-.+|--++.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~-eDg~~ge~~ls~ilq 323 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVA-EDGISGEHILSLILQ 323 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccc-cccccchHHHHHHHH
Confidence 45677788888888888887776665543 46666776677777888888 888887777665553
No 151
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=68.07 E-value=2.5e+02 Score=33.09 Aligned_cols=178 Identities=16% Similarity=0.194 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCC-----------
Q psy13767 54 ERKAIERQLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKD------MEL----------- 116 (801)
Q Consensus 54 ~~~~i~~~l~~L~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~l~~------~~~----------- 116 (801)
+...++.+|..+..-=..|...+.+-+..|+.+......|++.+..|..-|..... +.. ..+
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~-l~~~ke~~~~~d~~~~~~s~~d~ 344 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK-LQEDKEQQSAEDSEKERDSHEDG 344 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccchhhhhhhhccccccccccc
Confidence 35677888888888888899999999999999988888888887777766554432 110 000
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhcccChhhhhhHhhhHHhHHHHHHHHHHHHhhhhhhhhh
Q psy13767 117 --IPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFL 194 (801)
Q Consensus 117 --~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~LW~ 194 (801)
+..|...++.+-.+++....++...+..+..|...-..+... .......+...+..|..+-..+...
T Consensus 345 ~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~-~~~ek~~~~~e~q~L~ekl~~lek~---------- 413 (717)
T PF09730_consen 345 DYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEER-YKQEKDRLESEVQNLKEKLMSLEKS---------- 413 (717)
T ss_pred chhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 111223344445555566666555555555554443333321 1111222233333333222222111
Q ss_pred hhccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy13767 195 YNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMAT 255 (801)
Q Consensus 195 ~~~l~Ls~~~~~~~~i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~W 255 (801)
...-++++..|......+...+.+....|..+......|-.++..|---
T Consensus 414 ------------~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHH 462 (717)
T PF09730_consen 414 ------------SREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHH 462 (717)
T ss_pred ------------hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112556777777777777788888888887777666676666666543
No 152
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=67.80 E-value=8.4 Score=41.75 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=28.6
Q ss_pred cCCCCCHHHHHHHHHHhCCCCCCCcccHHHHH
Q psy13767 679 TKFETSKLEMGAVADMFDHDYNPGLIDWKEFI 710 (801)
Q Consensus 679 ~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~ 710 (801)
.|+......+..+|..+|.| |||.|+++||+
T Consensus 327 ~~~~~~~~~l~~aF~~~D~d-gdG~Is~~E~~ 357 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLD-GDGFITREEWL 357 (391)
T ss_pred hccChhhHHHHHHHHHhCCC-CCCcCcHHHHH
Confidence 47888888999999999999 99999999996
No 153
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=67.32 E-value=1.5e+02 Score=30.29 Aligned_cols=68 Identities=12% Similarity=0.211 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCCCChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q psy13767 237 EALALAEKFWSELQSVMATLRDLQDNLNSQE--PPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQK 306 (801)
Q Consensus 237 ~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~--~~~~d~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~ 306 (801)
..+..++.....+..+..=+.+.-..+.... ..+.+...+...+..-+.+..+|..+. +......+..
T Consensus 84 ~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~ 153 (264)
T PF06008_consen 84 RTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD--FTPQRQNAED 153 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHH
Confidence 3333334444444444444444444433322 123456667777888888888887773 5555555443
No 154
>KOG0995|consensus
Probab=66.95 E-value=2.2e+02 Score=32.04 Aligned_cols=132 Identities=17% Similarity=0.238 Sum_probs=79.0
Q ss_pred HHHHHHHHHH-HHHHHHHhhHHHHHHHHhHHHHhhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 15 VKAQLQEQKF-LKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQLNELMNRFDNLNEGASQRMDALEQAMAVAKQF 93 (801)
Q Consensus 15 v~~~l~~~~~-l~~el~~~~~~v~~l~~~g~~L~~~~~~~~~~~i~~~l~~L~~rw~~L~~~~~~r~~~Le~~~~~~~~f 93 (801)
++..+.+... +-.++++.+..-..|...-.. +.....+...|...|..|..-+..-+..+.......+.+
T Consensus 222 lk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e---------~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~ 292 (581)
T KOG0995|consen 222 LKHRLEKYFTSIANEIEDLKKTNRELEEMINE---------REKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHM 292 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHH
Confidence 3444443333 444555555444444444332 344555666677777777766666555555555554555
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-----------CCCCCCHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHh
Q psy13767 94 QDKLTGILDWLDKSEKKIKDM-----------ELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSL 155 (801)
Q Consensus 94 ~~~~~~l~~WL~~~e~~l~~~-----------~~~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L 155 (801)
...+..+..=+..+|..+... +.-+-+++.++.+-.+...+..+|......++.+.+..-.+
T Consensus 293 ~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~ 365 (581)
T KOG0995|consen 293 EKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWEL 365 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 555555555555555443221 12366788888888888889999888888888887765544
No 155
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=66.84 E-value=3.6e+02 Score=34.39 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy13767 466 IKHWITIIQSRWEEVSSWAKQ 486 (801)
Q Consensus 466 i~~~~~~l~~rw~~l~~~~~~ 486 (801)
+..+.+.|...-+.|...+..
T Consensus 998 l~~q~~dL~~~~~~L~~~i~~ 1018 (1179)
T TIGR02168 998 LKERYDFLTAQKEDLTEAKET 1018 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 156
>KOG4578|consensus
Probab=66.35 E-value=6.3 Score=40.14 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=48.2
Q ss_pred HHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHH-HHHHHHHhCCCCCCCcccHHHHHHHhCCCcc
Q psy13767 651 RLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLE-MGAVADMFDHDYNPGLIDWKEFIAALRPDWE 718 (801)
Q Consensus 651 ~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e-~~~~~~~~d~d~~~g~i~~~ef~~~~~~~~~ 718 (801)
-+..-|..+|+|.++.|.+.|..-+-..+-..-.... ...+++..|.| +|..|++.|++.-|...+.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlN-kDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLN-KDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccC-CCceecHHHHhhhhccccc
Confidence 4566799999999999999886443322211222222 45677788999 9999999999998875544
No 157
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=65.82 E-value=2.1e+02 Score=31.26 Aligned_cols=219 Identities=18% Similarity=0.241 Sum_probs=121.3
Q ss_pred HHHHHHHhHHHHhhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13767 35 SMSSLFQMGNEVAANADPAERKAIERQLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDM 114 (801)
Q Consensus 35 ~v~~l~~~g~~L~~~~~~~~~~~i~~~l~~L~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~l~~~ 114 (801)
.++.+...-+.|.... ..+..|.+.+..|.++|..|..-...-.......-...+.|...+..+..=+..+|+.+...
T Consensus 272 ~i~~lk~~n~~l~e~i--~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L 349 (622)
T COG5185 272 DIANLKTQNDNLYEKI--QEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKAL 349 (622)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444322 22567888899999999999887766655555555555667777777777777777766432
Q ss_pred C-----------CCCCCHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhcccChhhhhhHhhhHHhHHHHHHHHHH
Q psy13767 115 E-----------LIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVE 183 (801)
Q Consensus 115 ~-----------~~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~~~~l~~r~~~l~~ 183 (801)
. .-+.+++..+.+-++-..|-.+++......+.|...... ..-.+..+-..+..+-..|+.+..
T Consensus 350 ~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~-----~~leaq~~~~slek~~~~~~sl~~ 424 (622)
T COG5185 350 QSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKS-----RKLEAQGIFKSLEKTLRQYDSLIQ 424 (622)
T ss_pred HhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 125677778888888888888888888877777665321 111233344444555556666666
Q ss_pred HHhhhhhhh-hhhhccccC---CC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy13767 184 ASDNLGQYA-FLYNQLILS---PR-----FSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMA 254 (801)
Q Consensus 184 ~~~~r~~~L-W~~~~l~Ls---~~-----~~~~~~i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~ 254 (801)
.+.-+...+ =..+|.+|- .+ ..-...|..-+.+|++.-+..-.......-.|+++..- ....+.++.+
T Consensus 425 ~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~---~~~~i~El~~ 501 (622)
T COG5185 425 NITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKN---LKHDINELTQ 501 (622)
T ss_pred HhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhh---HHhHHHHHHH
Confidence 665554444 111222111 11 11234455555555554444333333333446655443 2333344444
Q ss_pred HHHHHHHhh
Q psy13767 255 TLRDLQDNL 263 (801)
Q Consensus 255 Wl~~~e~~l 263 (801)
=+...+..|
T Consensus 502 ~l~~~e~~L 510 (622)
T COG5185 502 ILEKLELEL 510 (622)
T ss_pred HHHHHHHHH
Confidence 444444444
No 158
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=65.18 E-value=2.4e+02 Score=31.77 Aligned_cols=83 Identities=13% Similarity=0.164 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHH
Q psy13767 465 VIKHWITIIQSRWEEVSSWAKQREERLRNHLRSLQ-DLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKE 543 (801)
Q Consensus 465 ~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~~~~-~f~~~~~el~~Wl~~~e~~l~~~~~~~~~~d~~~~~~~l~~hk~ 543 (801)
.|-.-+..+...|+.-..........++..+.... .+.........=+..+-..|. ...+-+.+...+.+...
T Consensus 345 ~L~~f~~~~~~lwd~h~~~l~~~e~~l~~~l~~~r~~~~~~~q~~E~~Ld~~~d~lR------q~s~ee~L~~~l~~~~~ 418 (473)
T PF14643_consen 345 DLFKFFQEAAQLWDEHRKKLSKQEEELEKRLEQCREKHDQENQEKEAKLDIALDRLR------QASSEEKLKEHLEKALD 418 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHHHHHH
Confidence 45555666666777666666665555554443322 233333444443443333333 23356677777877777
Q ss_pred HHHHHHhhhh
Q psy13767 544 FMEATSKRQH 553 (801)
Q Consensus 544 ~~~ei~~~~~ 553 (801)
+...|...-.
T Consensus 419 ~Ld~Ie~~Y~ 428 (473)
T PF14643_consen 419 LLDQIEEEYE 428 (473)
T ss_pred HHHHHHHHHH
Confidence 7777776533
No 159
>KOG4674|consensus
Probab=65.04 E-value=4.3e+02 Score=34.68 Aligned_cols=87 Identities=9% Similarity=0.227 Sum_probs=59.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhhCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 7 PPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPA---ERKAIERQLNELMNRFDNLNEGASQRMDAL 83 (801)
Q Consensus 7 ~~~~d~~~v~~~l~~~~~l~~el~~~~~~v~~l~~~g~~L~~~~~~~---~~~~i~~~l~~L~~rw~~L~~~~~~r~~~L 83 (801)
|.+..-..+...|-.++.+..-.......+..+...|+.+=..-.+. -.......+..+..+...|......-...+
T Consensus 516 ~es~S~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i 595 (1822)
T KOG4674|consen 516 NESDSEEIISERLVEFSNINELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRI 595 (1822)
T ss_pred cCccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777777777777777777777777777777774432222 245567777888888888888888887777
Q ss_pred HHHHHHHHHH
Q psy13767 84 EQAMAVAKQF 93 (801)
Q Consensus 84 e~~~~~~~~f 93 (801)
+..+.....|
T Consensus 596 ~sLl~erd~y 605 (1822)
T KOG4674|consen 596 ESLLTERDMY 605 (1822)
T ss_pred HHHHHHHHHH
Confidence 7777654444
No 160
>KOG0978|consensus
Probab=64.81 E-value=2.8e+02 Score=32.44 Aligned_cols=86 Identities=13% Similarity=0.160 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhccCCC-------CCCChhHHHHHHHHHHHHH
Q psy13767 473 IQSRWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEP-------LPDDIPTVERLIEEHKEFM 545 (801)
Q Consensus 473 l~~rw~~l~~~~~~r~~~L~~~~~~~~~f~~~~~el~~Wl~~~e~~l~~~~~~~-------~~~d~~~~~~~l~~hk~~~ 545 (801)
+..+.+.+..........|+... .......+..+..|-...-..+..+.-+. +..-...++.....|+++.
T Consensus 376 ~~~~le~~k~~~ke~~~~~~~ka--~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll 453 (698)
T KOG0978|consen 376 NELRLEMLKSLLKEQRDKLQVKA--RAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLL 453 (698)
T ss_pred HHHHHHHHhCCCHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666555221 13455556666666554433333110000 0111334555556666666
Q ss_pred HHHHhhhhhhhhhhc
Q psy13767 546 EATSKRQHEVDSVRA 560 (801)
Q Consensus 546 ~ei~~~~~~~~~l~~ 560 (801)
.|+......|+....
T Consensus 454 ~e~~t~gsA~ed~Qe 468 (698)
T KOG0978|consen 454 SEMETIGSAFEDMQE 468 (698)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666555555433
No 161
>KOG0038|consensus
Probab=64.17 E-value=5.6 Score=35.43 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=41.4
Q ss_pred ccccCCCCCcCHHHHHHHHHhcCCC-CCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 658 KMDKNNDGLIPREDFVDGIIKTKFE-TSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 658 ~~D~d~~g~i~~~e~~~~l~~~g~~-~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
.|-.||.|.++.+.|...+..+... +.+..+.-.++.+|-| +|++|--......++
T Consensus 79 ~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd-~D~~i~~~DL~~~l~ 135 (189)
T KOG0038|consen 79 VFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFD-GDEFIGHDDLEKTLT 135 (189)
T ss_pred HhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecC-CCCcccHHHHHHHHH
Confidence 3557999999999999888765432 2233345566788999 999998888777664
No 162
>KOG0042|consensus
Probab=63.31 E-value=9.6 Score=42.14 Aligned_cols=67 Identities=12% Similarity=0.174 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
......+.-|..+|.|+.|.++.......|+..+.+.+.+-+.++..++|.+ -+|++...+|...+.
T Consensus 590 ~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~-~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 590 EDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADEN-LNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hcceeeHHHHHHHHH
Confidence 4445667779999999999999999999999988888999999999999999 899999999988774
No 163
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=60.58 E-value=2.6 Score=32.90 Aligned_cols=58 Identities=16% Similarity=0.308 Sum_probs=36.1
Q ss_pred HHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhC-C---CCCCCcccHHHHHHHh
Q psy13767 650 SRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFD-H---DYNPGLIDWKEFIAAL 713 (801)
Q Consensus 650 ~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d-~---d~~~g~i~~~ef~~~~ 713 (801)
..+..+|+.+ .++-+.||..+|+..|.- ...+-+...|..+. . . +.|-.||..|+..|
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~p----e~aey~~~~Mp~~~~~~~~~-~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTP----EQAEYCISRMPPYEGPDGDA-IPGAYDYESFTNSL 67 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-C----CCHHHHHCCSEC--SSS-----TTEEECHHHHCCC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCc----HHHHHHHHHCcccCCCCcCC-CCCCcCHHHHHHHH
Confidence 4688999999 777799999999998641 11112222222222 1 1 34779999998765
No 164
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=59.05 E-value=8.2 Score=33.11 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=25.7
Q ss_pred HHHHHHHhcccccCCCCCcCHHHHHHHHHh
Q psy13767 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIK 678 (801)
Q Consensus 649 ~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~ 678 (801)
...+..++...|.|+||+++..||..+|.-
T Consensus 42 ~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 42 RDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 367888999999999999999999998873
No 165
>KOG4666|consensus
Probab=58.41 E-value=11 Score=38.41 Aligned_cols=63 Identities=11% Similarity=0.070 Sum_probs=50.5
Q ss_pred HHHHHHHhcccccCCCCCcCHHHHHHHHHh-cCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIK-TKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 649 ~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~-~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
..-+.=+|+.|+.+.||.++..+|...+.. +|.+. -.+--++..++.. .+|.|.|.+|-..+.
T Consensus 295 ~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~--l~v~~lf~~i~q~-d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 295 PVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEV--LRVPVLFPSIEQK-DDPKIYASNFRKFAA 358 (412)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhcCcce--eeccccchhhhcc-cCcceeHHHHHHHHH
Confidence 344666899999999999999999888864 46543 3377788888988 899999999987664
No 166
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=58.22 E-value=5e+02 Score=33.18 Aligned_cols=71 Identities=13% Similarity=0.225 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhHHHHHHHHHhcccccCCCCCcCHHH
Q psy13767 594 RCRLLWDTWRNVWLLAWERQRRLQERLNYLIELEKVKNFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPRED 671 (801)
Q Consensus 594 ~~~~L~~~W~~L~~~~~~r~~~L~~~l~~l~e~~~~~~f~f~~~~~~~l~~~~~~~~~~~~~F~~~D~d~~g~i~~~e 671 (801)
..+.+..|+..|.....+-..........+.++++.. +..|+.-+......+..+|+.+=..|+|.+...+
T Consensus 971 e~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~-------~~~f~~~f~~In~~F~~if~~L~~GG~a~L~l~~ 1041 (1163)
T COG1196 971 EYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEK-------RERFKETFDKINENFSEIFKELFGGGTAELELTE 1041 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEeCC
Confidence 3445555555555554443333333443333333322 3445555555567788888888888888876444
No 167
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=57.72 E-value=4e+02 Score=31.82 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q psy13767 277 QQQQYALKEIKAEIDQTKPEVEQCRASGQK 306 (801)
Q Consensus 277 ~~~l~~~~~l~~el~~~~~~~~~l~~~~~~ 306 (801)
+...++++.+...+...+..++.+....+.
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777666665543
No 168
>KOG0933|consensus
Probab=56.75 E-value=4.4e+02 Score=32.05 Aligned_cols=91 Identities=16% Similarity=0.126 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHHHHH
Q psy13767 211 KKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEI 290 (801)
Q Consensus 211 ~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el 290 (801)
+..+....-+...+......+.-.+..+...+..-...++.+..-+++....|.+.. .++...+.+.++...+...+
T Consensus 412 ~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~---~~~~~~e~l~q~~~~l~~~~ 488 (1174)
T KOG0933|consen 412 STEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLG---YKIGQEEALKQRRAKLHEDI 488 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHHHHH
Confidence 334444444555566666666666666655555555666666666777777776553 33344444444555555555
Q ss_pred hccchhHHHHHHHH
Q psy13767 291 DQTKPEVEQCRASG 304 (801)
Q Consensus 291 ~~~~~~~~~l~~~~ 304 (801)
......++.|...-
T Consensus 489 ~~lk~~~~~l~a~~ 502 (1174)
T KOG0933|consen 489 GRLKDELDRLLARL 502 (1174)
T ss_pred HHHHHHHHHHHhhh
Confidence 55555555555543
No 169
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=56.73 E-value=4e+02 Score=31.60 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHccCccHHHHHHHHHHhhc
Q psy13767 129 REHDALHKEILRKKPDFTELTDIASSLMG 157 (801)
Q Consensus 129 ~~~~~l~~el~~~~~~~~~l~~~~~~L~~ 157 (801)
.+++.+..|+..++..+..+...++.|..
T Consensus 552 ~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 552 SELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666655543
No 170
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=55.91 E-value=1.5e+02 Score=26.26 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=51.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhhC----C--------hhhHHHHHHHHHHHHHHHHHHHHH
Q psy13767 8 PSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANA----D--------PAERKAIERQLNELMNRFDNLNEG 75 (801)
Q Consensus 8 ~~~d~~~v~~~l~~~~~l~~el~~~~~~v~~l~~~g~~L~~~~----~--------~~~~~~i~~~l~~L~~rw~~L~~~ 75 (801)
.++....+...-...+.+..|+...+..+..+...-+.+.... . ....+.++..+..|+.||+.+...
T Consensus 11 ~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 11 GGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666667777888888888888888876655553210 0 112455666777777777777777
Q ss_pred HHHHHHHHHHHHH
Q psy13767 76 ASQRMDALEQAMA 88 (801)
Q Consensus 76 ~~~r~~~Le~~~~ 88 (801)
..++.-..++...
T Consensus 91 lGEK~E~veEL~~ 103 (120)
T PF12325_consen 91 LGEKSEEVEELRA 103 (120)
T ss_pred hcchHHHHHHHHH
Confidence 7666665555443
No 171
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=55.53 E-value=3.6e+02 Score=30.73 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHH-HHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 278 QQQYALKEIKAEIDQTKPEVEQCRASGQ-KLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIH 346 (801)
Q Consensus 278 ~~l~~~~~l~~el~~~~~~~~~l~~~~~-~L~~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~ 346 (801)
..++.+-...-+|........-+....+ .|+..- ..........+...-+.|..+...+..+..+-.+
T Consensus 114 ~~L~~l~~~Li~IHGQh~~q~Ll~~~~~r~lLD~f-~~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~~e 182 (557)
T COG0497 114 AQLKELGQLLIDIHGQHEHQSLLKPELQRQLLDAF-AGLEELAQEAYQEAYQAWKQARRELEDLQEKERE 182 (557)
T ss_pred HHHHHHHHhhheeeccchHHHhcChHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556555555444444333 344421 1122222233556666666666655555544333
No 172
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=55.43 E-value=3e+02 Score=29.67 Aligned_cols=56 Identities=11% Similarity=0.165 Sum_probs=27.2
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 432 KFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERLR 492 (801)
Q Consensus 432 ~~~~~l~~~~~~v~~l~~~~~~Ll~~~~p~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~ 492 (801)
++.+.++....+=..++..-+.++... ..++..+..+..++......+..+...|.
T Consensus 249 ~i~~~lekI~sREk~iN~qle~l~~eY-----r~~~~~ls~~~~~y~~~s~~V~~~t~~L~ 304 (359)
T PF10498_consen 249 DISKTLEKIESREKYINNQLEPLIQEY-----RSAQDELSEVQEKYKQASEGVSERTRELA 304 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344444444444444444444444331 23455555566666655555555555444
No 173
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=55.16 E-value=1.3e+02 Score=25.75 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 420 DQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERLR 492 (801)
Q Consensus 420 ~~~l~~~l~~~~~~~~~l~~~~~~v~~l~~~~~~Ll~~~~p~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~ 492 (801)
...+...+.+|.....+|....+.-.-....|..++....++..+.|..+++.+..+-..+......-...+.
T Consensus 22 ~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~ 94 (105)
T cd00632 22 RQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLK 94 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778888888888776666666778888877666666667777777766666655555554444443
No 174
>KOG0976|consensus
Probab=52.35 E-value=4.6e+02 Score=30.91 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=39.8
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHcC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 285 EIKAEIDQTKPEVEQCRASGQKLMKICG--EPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAM 348 (801)
Q Consensus 285 ~l~~el~~~~~~~~~l~~~~~~L~~~~~--~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~l 348 (801)
+++-+|......++.+.+.-++|-.... ..+...|++....+...-+.|..+..+|.++++...
T Consensus 334 dirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelK 399 (1265)
T KOG0976|consen 334 DIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELK 399 (1265)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555554211 125667777888888888888888888888877654
No 175
>KOG4674|consensus
Probab=51.73 E-value=7e+02 Score=32.91 Aligned_cols=82 Identities=11% Similarity=0.161 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHcCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 273 PKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPD---KPEVKKHIEDLDSAWDNVTALFAKREENLIHAME 349 (801)
Q Consensus 273 ~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~---~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~l~ 349 (801)
-..|...|-.|+.+..-......-+..|...|..+-......+ ...+...++....+...|.....+-..+++..+.
T Consensus 521 ~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~ 600 (1822)
T KOG4674|consen 521 EEIISERLVEFSNINELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLT 600 (1822)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777888888877777777777888888887776433322 4456677788888888888888887777777765
Q ss_pred HHHHH
Q psy13767 350 KAMEF 354 (801)
Q Consensus 350 ~~~~~ 354 (801)
..-.|
T Consensus 601 erd~y 605 (1822)
T KOG4674|consen 601 ERDMY 605 (1822)
T ss_pred HHHHH
Confidence 43333
No 176
>KOG0046|consensus
Probab=50.25 E-value=14 Score=40.44 Aligned_cols=91 Identities=19% Similarity=0.238 Sum_probs=55.3
Q ss_pred CCCHHHHHHHH---HHhCCCCCCCcccHHHHHHHhCCCcccCCCCCchhhhhHHHHhhhcccccccccceeEcCCCcccc
Q psy13767 682 ETSKLEMGAVA---DMFDHDYNPGLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVFQVGEGKYRF 758 (801)
Q Consensus 682 ~~~~~e~~~~~---~~~d~d~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~c~~~~~~~v~~~~~g~y~~ 758 (801)
..+..|+..+- ..+| | ++|+|+..+...++...+.+. ..-.-+.|...+. .+..-.+|+..|
T Consensus 12 ~~tq~El~~l~~kF~~~d-~-~~G~v~~~~l~~~f~k~~~~~-g~~~~eei~~~l~------------~~~~~~~g~v~f 76 (627)
T KOG0046|consen 12 QLTQEELRELKEKFNKLD-D-QKGYVTVYELPDAFKKAKLPL-GYFVREEIKEILG------------EVGVDADGRVEF 76 (627)
T ss_pred cccHHHHHHHHHHHHhhc-C-CCCeeehHHhHHHHHHhcccc-cchhHHHHHHHHh------------ccCCCcCCccCH
Confidence 34555555544 4557 8 999999999999886555442 2221222333322 111225688888
Q ss_pred CCcchhHHHhhhcCccceecCccHhhHHHhh
Q psy13767 759 GDSQKLRLVRILRSTVMVRVGGGWVALDEFL 789 (801)
Q Consensus 759 g~~~~~~~~r~~~~~~~~rvg~g~~~~~~~~ 789 (801)
.++ +..+-.++++..+-+|||.-+..-|+
T Consensus 77 e~f--~~~~~~l~s~~~~k~~~g~~~~~~~~ 105 (627)
T KOG0046|consen 77 EEF--VGIFLNLKSKDIAKIGEGIKAASGTL 105 (627)
T ss_pred HHH--HHHHHhhhhhhhhhhcCCccccccee
Confidence 887 66566667776677888876555554
No 177
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=49.28 E-value=4.3e+02 Score=29.75 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcC
Q psy13767 208 TDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEK-FWSELQSVMATLRDLQDNLNSQ 266 (801)
Q Consensus 208 ~~i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~-f~~~~~~l~~Wl~~~e~~l~~~ 266 (801)
.-+....+.|...|+.|......|...+.+.-..... -....+.+..-|......|...
T Consensus 61 ~l~~~~~~~l~~~w~~v~~~~~~r~~~I~~l~~~L~~~E~~R~~~l~~~l~~~~~~L~~i 120 (473)
T PF14643_consen 61 ALLEYSIQDLLELWDEVAEHSQKRKQWIKELDEDLEELEKERADKLKKVLRKYVEILEKI 120 (473)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667788888988888887777766554332122 2334445555555555555443
No 178
>KOG4302|consensus
Probab=47.63 E-value=5.2e+02 Score=30.21 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 56 KAIERQLNELMNRFDNLNEGASQRMDALEQAMAV 89 (801)
Q Consensus 56 ~~i~~~l~~L~~rw~~L~~~~~~r~~~Le~~~~~ 89 (801)
......+.+|+.=|+.+...-.+|.+.|...-..
T Consensus 14 ~t~~~~~~eL~~IW~~igE~~~e~d~~l~~le~e 47 (660)
T KOG4302|consen 14 ATCGNLLNELQKIWDEIGESETERDKKLLRLEQE 47 (660)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 3455677779999999999999999888766554
No 179
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=46.42 E-value=4.1e+02 Score=28.63 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=26.4
Q ss_pred HHhhHHHHHHHHhHHHHhhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 30 ADRQHSMSSLFQMGNEVAANADPAERKAIERQLNELMNRFDNLNEGASQRMDALEQAM 87 (801)
Q Consensus 30 ~~~~~~v~~l~~~g~~L~~~~~~~~~~~i~~~l~~L~~rw~~L~~~~~~r~~~Le~~~ 87 (801)
...+.+++.+......+... .+.....|..|...+..-.+.+..|.+.|..-+
T Consensus 216 kDWR~hleqm~~~~~~I~~~-----~~~~~~~L~kl~~~i~~~lekI~sREk~iN~ql 268 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESA-----LPETKSQLDKLQQDISKTLEKIESREKYINNQL 268 (359)
T ss_pred chHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555444444332 233455555555555555555555555554433
No 180
>KOG4302|consensus
Probab=46.23 E-value=5.4e+02 Score=30.05 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHcCCC---------C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 276 IQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEP---------D-KPEVKKHIEDLDSAWDNVTALFAKREENLI 345 (801)
Q Consensus 276 ~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~---------~-~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~ 345 (801)
+......+..+...-+.+...+..+...-+.|....+.+ | .+-.-..++.++.+-..|+..-..|.+...
T Consensus 105 l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~ 184 (660)
T KOG4302|consen 105 LESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVL 184 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666666666666666666655555433222 2 222236677777766666655555544444
Q ss_pred HHHHHHHHHHHHHhhc
Q psy13767 346 HAMEKAMEFHETLQRK 361 (801)
Q Consensus 346 ~~l~~~~~~~~~~~~l 361 (801)
.-. ..++.....+
T Consensus 185 ~~~---~~I~~l~~~L 197 (660)
T KOG4302|consen 185 ELK---EEIKSLCSVL 197 (660)
T ss_pred HHH---HHHHHHHHHh
Confidence 333 2444444443
No 181
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=46.08 E-value=1.7e+02 Score=25.35 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 420 DQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERLRN 493 (801)
Q Consensus 420 ~~~l~~~l~~~~~~~~~l~~~~~~v~~l~~~~~~Ll~~~~p~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~ 493 (801)
...++..+.+|+....+|....+.-.-....|..|+...-.+..+.|..+++.+..+-..+......-...+..
T Consensus 26 ~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e 99 (110)
T TIGR02338 26 KQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKE 99 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777788888888888877777778888887776655555667777766655555555544444444433
No 182
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=45.22 E-value=92 Score=25.90 Aligned_cols=63 Identities=10% Similarity=0.080 Sum_probs=37.7
Q ss_pred HHHHHHhcccccCCCCCcCHHHHHHHHHh-------cCC----CCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhCCC
Q psy13767 650 SRLTDLFRKMDKNNDGLIPREDFVDGIIK-------TKF----ETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRPD 716 (801)
Q Consensus 650 ~~~~~~F~~~D~d~~g~i~~~e~~~~l~~-------~g~----~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~~~ 716 (801)
.+++-+|+.+ .|++|.++..-|...|.. +|. .-.+.-+...|... . ++..|+-++|+.-|...
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~-~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--Q-LSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--T-T-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--C-CCCccCHHHHHHHHHhC
Confidence 4566678888 788899999988876643 232 12555677777664 2 35679999999988654
No 183
>KOG3341|consensus
Probab=45.18 E-value=2.2e+02 Score=27.74 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=31.4
Q ss_pred CCCcccHHHHHHHhCCCcccCCCCCchhhhhHHHHhhhcccccccccceeEcCCCcccc
Q psy13767 700 NPGLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVFQVGEGKYRF 758 (801)
Q Consensus 700 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~c~~~~~~~v~~~~~g~y~~ 758 (801)
+.|.|+++|...-+.......+.....+++-..|+ ..-.-.+.|.|.+|| |||-+
T Consensus 113 nGGlislqel~~~l~~~R~~~~e~vt~dD~lrAi~---kLk~LG~gFev~~ig-gK~~v 167 (249)
T KOG3341|consen 113 NGGLISLQELCNHLLQRRKKDHEAVTEDDLLRAID---KLKVLGSGFEVIKIG-GKKLV 167 (249)
T ss_pred cCCeeeHHHHHHHHHHHhcccchhccHHHHHHHHH---HhhccCCCeEEEEec-CEEee
Confidence 46899999999954322221122222233333333 333344669999999 88765
No 184
>PRK11637 AmiB activator; Provisional
Probab=44.24 E-value=4.8e+02 Score=28.87 Aligned_cols=56 Identities=11% Similarity=0.153 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 56 KAIERQLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKI 111 (801)
Q Consensus 56 ~~i~~~l~~L~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~l 111 (801)
..+++.+..+...-..+...+..-...+.+...........+..+..=|...+..+
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i 98 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTL 98 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666666666555555555544444444455555544454444444
No 185
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=43.03 E-value=1.2e+02 Score=36.42 Aligned_cols=33 Identities=6% Similarity=0.044 Sum_probs=19.3
Q ss_pred CChhHHHH--HHHHHHHHHHHHHhhhhhhhhhhcc
Q psy13767 529 DDIPTVER--LIEEHKEFMEATSKRQHEVDSVRAS 561 (801)
Q Consensus 529 ~d~~~~~~--~l~~hk~~~~ei~~~~~~~~~l~~~ 561 (801)
.+|..... ....+..++.|.......+..+...
T Consensus 554 ~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~ 588 (722)
T PF05557_consen 554 DNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEG 588 (722)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 34544333 3455667788877777777666443
No 186
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=42.94 E-value=2.5e+02 Score=25.10 Aligned_cols=86 Identities=13% Similarity=0.226 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHH
Q psy13767 207 VTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEI 286 (801)
Q Consensus 207 ~~~i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~d~~~~~~~l~~~~~l 286 (801)
+.+|...+..|...++.|...-..|.......-..+..=......+..=+.+....+.....+.-=-+.-..++++++.+
T Consensus 22 ~~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~ 101 (126)
T PF09403_consen 22 TASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDL 101 (126)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 34699999999999999999888887766544433344444555555555555555544433332345556667777766
Q ss_pred HHHHhc
Q psy13767 287 KAEIDQ 292 (801)
Q Consensus 287 ~~el~~ 292 (801)
..+|+.
T Consensus 102 ~~~L~k 107 (126)
T PF09403_consen 102 LNKLDK 107 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 187
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=42.78 E-value=3.6e+02 Score=27.03 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13767 213 KLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNL 263 (801)
Q Consensus 213 ~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~l 263 (801)
.......+|..+...+..-...|+.+-..+..+...+..+..=|..+...|
T Consensus 107 ~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~l 157 (237)
T PF00261_consen 107 RAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNL 157 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 333444444444444433344444444444444444555444444444444
No 188
>KOG1707|consensus
Probab=42.23 E-value=25 Score=39.37 Aligned_cols=58 Identities=21% Similarity=0.341 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCC----CHHHHHHHHHHhCCCCCCCcccHHHHHH
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFET----SKLEMGAVADMFDHDYNPGLIDWKEFIA 711 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~----~~~e~~~~~~~~d~d~~~g~i~~~ef~~ 711 (801)
.....+..+|..||.|+||.++..||...+...+..+ ...+.. -.+ ..|.++|.-|++
T Consensus 312 ~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t------~~~-~~G~ltl~g~l~ 373 (625)
T KOG1707|consen 312 KGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDST------VKN-ERGWLTLNGFLS 373 (625)
T ss_pred HHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccc------eec-ccceeehhhHHH
Confidence 4556788999999999999999999999998775443 111111 123 568888888877
No 189
>KOG2871|consensus
Probab=42.18 E-value=19 Score=37.57 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=57.0
Q ss_pred HHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHH-HHHHhCCCCCCCcccHHHHHHHhCCCccc
Q psy13767 648 KKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGA-VADMFDHDYNPGLIDWKEFIAALRPDWEE 719 (801)
Q Consensus 648 ~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~-~~~~~d~d~~~g~i~~~ef~~~~~~~~~~ 719 (801)
....++++|+..|+.++|.|+.+-+...|..+....++.+.-. +-..+|.. +-|.|-.+.|+....|.-..
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE-~~~iil~~d~lg~~~p~tgs 378 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPE-SLGIILLEDFLGEFFPTTGS 378 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChh-hcceEEeccccccccCcccc
Confidence 4578999999999999999999999999998885566555444 44577888 89999988999888766543
No 190
>PHA02562 46 endonuclease subunit; Provisional
Probab=41.94 E-value=5.9e+02 Score=29.26 Aligned_cols=25 Identities=8% Similarity=0.027 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 470 ITIIQSRWEEVSSWAKQREERLRNH 494 (801)
Q Consensus 470 ~~~l~~rw~~l~~~~~~r~~~L~~~ 494 (801)
...+..+..++...+......+...
T Consensus 332 ~~~~~~~i~el~~~i~~~~~~i~~~ 356 (562)
T PHA02562 332 FNEQSKKLLELKNKISTNKQSLITL 356 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444554444444443
No 191
>KOG4347|consensus
Probab=41.81 E-value=27 Score=39.49 Aligned_cols=60 Identities=23% Similarity=0.301 Sum_probs=48.7
Q ss_pred HHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHH
Q psy13767 648 KKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEF 709 (801)
Q Consensus 648 ~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef 709 (801)
...-...+|+.+|++++|.|+..+|..+|..+......+.+.-++.-+|.+ ++ ..+-++-
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p-~~-~~d~e~~ 612 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPP-AD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCC-cc-ccccccc
Confidence 334567889999999999999999999998776555555677788888999 88 8887776
No 192
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=41.10 E-value=4e+02 Score=27.07 Aligned_cols=57 Identities=21% Similarity=0.353 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy13767 211 KKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQE 267 (801)
Q Consensus 211 ~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~ 267 (801)
+..++.+....+.+......+...|.+.+..-+++..+...+..-|......+....
T Consensus 91 keelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~ 147 (268)
T PF11802_consen 91 KEELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQV 147 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566666666777777788888888888778888888888888888777776654
No 193
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.39 E-value=3.3e+02 Score=25.59 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=18.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhh
Q psy13767 527 LPDDIPTVERLIEEHKEFMEATSKRQ 552 (801)
Q Consensus 527 ~~~d~~~~~~~l~~hk~~~~ei~~~~ 552 (801)
.+.++.+++.....++.+..+...++
T Consensus 140 ~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 140 KPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567777777788877777766654
No 194
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=39.33 E-value=7.1e+02 Score=29.40 Aligned_cols=30 Identities=7% Similarity=0.019 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 317 PEVKKHIEDLDSAWDNVTALFAKREENLIH 346 (801)
Q Consensus 317 ~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~ 346 (801)
..+...+..++..-..+..........++.
T Consensus 424 ~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~ 453 (650)
T TIGR03185 424 AQLLEELGEAQNELFRSEAEIEELLRQLET 453 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554444444444443
No 195
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=39.18 E-value=4.1e+02 Score=26.64 Aligned_cols=125 Identities=20% Similarity=0.298 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHHH
Q psy13767 209 DIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKA 288 (801)
Q Consensus 209 ~i~~~l~~L~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~ 288 (801)
.+...+..+....+.+...+......+++.-....++..+++++..=+...+..+.. .++. ..+.++..
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~----v~~~-------~e~~aL~~ 96 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA----VKDE-------RELRALNI 96 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cccH-------HHHHHHHH
Confidence 344455555555555666666666666666666678888899998888888888822 2343 35566777
Q ss_pred HHhccchhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 289 EIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAME 349 (801)
Q Consensus 289 el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~l~ 349 (801)
++.....+...+......|+.. ...+...+..+..+-.++...+.+-...++..+.
T Consensus 97 E~~~ak~r~~~le~el~~l~~~-----~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~ 152 (239)
T COG1579 97 EIQIAKERINSLEDELAELMEE-----IEKLEKEIEDLKERLERLEKNLAEAEARLEEEVA 152 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766666653 2345556666666666666666666666655543
No 196
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=38.93 E-value=2.4e+02 Score=23.83 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHhHHHHhhhCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 11 DYKVVKAQLQEQKFLKKMLADR-QHSMSSLFQMGNEVAANADP--AERKAIERQLNELMNRFDNLNEGASQRMDALEQAM 87 (801)
Q Consensus 11 d~~~v~~~l~~~~~l~~el~~~-~~~v~~l~~~g~~L~~~~~~--~~~~~i~~~l~~L~~rw~~L~~~~~~r~~~Le~~~ 87 (801)
+++.++..+.++=.+.++++.. +..+..+......++..++. ...+.....+..+...|..+.....++...-..++
T Consensus 9 ~~~~LP~el~r~l~~irelD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~deKv~lA~~~~ 88 (105)
T PF12998_consen 9 SLENLPAELQRNLTLIRELDAKSQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALELSDEKVALAQQAY 88 (105)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777665 35666667777777766543 23457788899999999999999998888777776
Q ss_pred HHHHHHHH
Q psy13767 88 AVAKQFQD 95 (801)
Q Consensus 88 ~~~~~f~~ 95 (801)
........
T Consensus 89 d~v~~hi~ 96 (105)
T PF12998_consen 89 DLVDRHIR 96 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65444333
No 197
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=38.77 E-value=2.9e+02 Score=24.68 Aligned_cols=86 Identities=14% Similarity=0.243 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q psy13767 55 RKAIERQLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDAL 134 (801)
Q Consensus 55 ~~~i~~~l~~L~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l 134 (801)
...|...+..|...++.|...-..|..........+..=......+..=+.+....+....++.---+.-+.++++++.+
T Consensus 22 ~~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~ 101 (126)
T PF09403_consen 22 TASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDL 101 (126)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 35699999999999999999998888876665554444444555555666666666655444444456777788888777
Q ss_pred HHHHHc
Q psy13767 135 HKEILR 140 (801)
Q Consensus 135 ~~el~~ 140 (801)
..+|+.
T Consensus 102 ~~~L~k 107 (126)
T PF09403_consen 102 LNKLDK 107 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 198
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=38.77 E-value=2.7e+02 Score=24.46 Aligned_cols=65 Identities=17% Similarity=0.191 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy13767 421 QEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAK 485 (801)
Q Consensus 421 ~~l~~~l~~~~~~~~~l~~~~~~v~~l~~~~~~Ll~~~~p~~~~~i~~~~~~l~~rw~~l~~~~~ 485 (801)
..++..++..+....+++.....-.--...|.-|+....+.....+..+++.|.-|-..|...-.
T Consensus 30 ~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~ 94 (119)
T COG1382 30 QQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEE 94 (119)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666665555455556677666666666666666666666666665555443
No 199
>KOG0963|consensus
Probab=38.50 E-value=6.6e+02 Score=28.81 Aligned_cols=40 Identities=8% Similarity=0.030 Sum_probs=21.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q psy13767 3 ANQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQM 42 (801)
Q Consensus 3 ~~~~~~~~d~~~v~~~l~~~~~l~~el~~~~~~v~~l~~~ 42 (801)
...|+|.+-+..+...+.+.+....+.......+..++..
T Consensus 97 ~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~e 136 (629)
T KOG0963|consen 97 IEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNE 136 (629)
T ss_pred hhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 3456666666666666666655444444444444444433
No 200
>KOG0751|consensus
Probab=37.96 E-value=60 Score=35.42 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=40.7
Q ss_pred ccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhCC
Q psy13767 658 KMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRP 715 (801)
Q Consensus 658 ~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~~ 715 (801)
.-|.-+||-|+.+||...= ..-+. .+.-....+.-||+. |+|.|+|++|-.....
T Consensus 82 iaD~tKDglisf~eF~afe-~~lC~-pDal~~~aFqlFDr~-~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 82 IADQTKDGLISFQEFRAFE-SVLCA-PDALFEVAFQLFDRL-GNGEVSFEDVADIFGQ 136 (694)
T ss_pred hhhhcccccccHHHHHHHH-hhccC-chHHHHHHHHHhccc-CCCceehHHHHHHHhc
Confidence 3467788999999997542 22222 244466678899999 9999999999998763
No 201
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.72 E-value=3.8e+02 Score=25.81 Aligned_cols=95 Identities=16% Similarity=0.283 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhhCC-hhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Q psy13767 13 KVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANAD-PAERKAIERQLNELMNRFDNLNEGAS-----------QRM 80 (801)
Q Consensus 13 ~~v~~~l~~~~~l~~el~~~~~~v~~l~~~g~~L~~~~~-~~~~~~i~~~l~~L~~rw~~L~~~~~-----------~r~ 80 (801)
.........+..+..++...+..+..+...-+.....-. ..++...-..+..|...-..|...+. ...
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~ 141 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLK 141 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 345566677888889999999888888888777754322 22355555666666666665555554 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 81 DALEQAMAVAKQFQDKLTGILDWLDKS 107 (801)
Q Consensus 81 ~~Le~~~~~~~~f~~~~~~l~~WL~~~ 107 (801)
..+..+...+..|.+.+..+..|+..+
T Consensus 142 ~~~~~~~~~anrwTDNI~~l~~~~~~k 168 (188)
T PF03962_consen 142 EEIKIAKEAANRWTDNIFSLKSYLKKK 168 (188)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 333334444566777777777777663
No 202
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=37.38 E-value=3.3e+02 Score=24.93 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHccCccHHHHHHHHHHh
Q psy13767 124 IQQRIREHDALHKEILRKKPDFTELTDIASSL 155 (801)
Q Consensus 124 v~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L 155 (801)
+..+-.++..++.+++.....+.......+..
T Consensus 75 ~E~l~rriq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 75 AEQLNRRIQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666777777777666665555554443
No 203
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=36.61 E-value=3.2e+02 Score=24.61 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHHHhhcCcchhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy13767 442 IEKDATIGLAQRILVKSHPDGATVIKHWITI----IQSRWEEVSSWAKQREERLRNH 494 (801)
Q Consensus 442 ~~v~~l~~~~~~Ll~~~~p~~~~~i~~~~~~----l~~rw~~l~~~~~~r~~~L~~~ 494 (801)
.-++.|...|+.+-.... ..+.+.+.. +..+-+.+...+.....+|+.+
T Consensus 39 k~F~~LVk~Ge~~e~~~~----~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dklE~~ 91 (132)
T PF05597_consen 39 KVFEALVKEGEKLEKKTR----KKAEEQVEEARDQVKSRVDDVKERATGQWDKLEQA 91 (132)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777776533221 233333333 3366666666666666666643
No 204
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.45 E-value=4.5e+02 Score=26.29 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHccCccHHHHH
Q psy13767 91 KQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELT 149 (801)
Q Consensus 91 ~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~ 149 (801)
...+..-+++-.|+...+-. ...+....-..|+..+.+++.++.+...+.-+-.+|.
T Consensus 52 KKLQR~RdQIK~W~~~~diK--dk~~L~e~Rk~IE~~MErFK~vEkesKtKafSkeGL~ 108 (233)
T PF04065_consen 52 KKLQRLRDQIKTWLSSNDIK--DKKKLLENRKLIEEQMERFKVVEKESKTKAFSKEGLM 108 (233)
T ss_pred HHHHHHHHHHHHHccCcccc--cHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhh
Confidence 33445556788898665422 2222223345688899999999999888777767665
No 205
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=35.73 E-value=4.7e+02 Score=26.27 Aligned_cols=88 Identities=24% Similarity=0.314 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Q psy13767 58 IERQLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKE 137 (801)
Q Consensus 58 i~~~l~~L~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l~~e 137 (801)
+.+.+..+......+...+......+++.-....++...+.++..-+...+..+.+ ..+... +.+|..+
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~----v~~~~e-------~~aL~~E 97 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA----VKDERE-------LRALNIE 97 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cccHHH-------HHHHHHH
Confidence 44445555555556666666677777777777788999999999999999988733 334443 4455555
Q ss_pred HHccCccHHHHHHHHHHhh
Q psy13767 138 ILRKKPDFTELTDIASSLM 156 (801)
Q Consensus 138 l~~~~~~~~~l~~~~~~L~ 156 (801)
+..-+.....+......|.
T Consensus 98 ~~~ak~r~~~le~el~~l~ 116 (239)
T COG1579 98 IQIAKERINSLEDELAELM 116 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5554444555544444443
No 206
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=35.68 E-value=24 Score=30.83 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=17.7
Q ss_pred HHHHhcccccCCCCCcCHHHHHH
Q psy13767 652 LTDLFRKMDKNNDGLIPREDFVD 674 (801)
Q Consensus 652 ~~~~F~~~D~d~~g~i~~~e~~~ 674 (801)
++.+|+..|.|+||.|+..|...
T Consensus 90 ~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 90 ARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHH-TT-SSSEEHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHcc
Confidence 55678889999999999999764
No 207
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=35.25 E-value=36 Score=19.73 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=9.0
Q ss_pred ccCCCCCcCHHHHH
Q psy13767 660 DKNNDGLIPREDFV 673 (801)
Q Consensus 660 D~d~~g~i~~~e~~ 673 (801)
|.|+||.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 56777777766653
No 208
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=34.99 E-value=3.6e+02 Score=24.74 Aligned_cols=76 Identities=17% Similarity=0.213 Sum_probs=52.4
Q ss_pred HHHHhhHhHHHHHHHHHHHHhhcCcc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy13767 436 ELAEKEIEKDATIGLAQRILVKSHPD-GATVIKHWITIIQSRWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAK 514 (801)
Q Consensus 436 ~l~~~~~~v~~l~~~~~~Ll~~~~p~-~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~~~~~f~~~~~el~~Wl~~ 514 (801)
.|.....+|+.++..+..|+...... ....+...-......|+.+......+..+++. .|......|.+--..
T Consensus 67 ~L~~l~~~l~~a~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~we~f~~e~~~~~~~vde------e~~~~~~~l~e~Y~~ 140 (145)
T PF14942_consen 67 NLEQLLERLQAANSMCSRLQQKEQEKQKDDYLQANREQRKQEWEEFMKEQQQKKQRVDE------EFREKEERLKEQYSE 140 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 45555566777777777776532211 12467777778889999999999999999885 477777777665555
Q ss_pred HHh
Q psy13767 515 CES 517 (801)
Q Consensus 515 ~e~ 517 (801)
++.
T Consensus 141 ~~~ 143 (145)
T PF14942_consen 141 MEK 143 (145)
T ss_pred Hhh
Confidence 543
No 209
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=34.91 E-value=7e+02 Score=28.01 Aligned_cols=51 Identities=24% Similarity=0.331 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy13767 58 IERQLNELMNRFDNLNEGASQ--RMDALEQAMA--VAKQFQDKLTGILDWLDKSE 108 (801)
Q Consensus 58 i~~~l~~L~~rw~~L~~~~~~--r~~~Le~~~~--~~~~f~~~~~~l~~WL~~~e 108 (801)
++..+..|..|--.+...+.. |...+++.-. .-+.+...+..+.+||...+
T Consensus 90 ~~n~m~~lD~rLvevre~L~~irr~q~~q~~erk~~~qe~~~rl~~L~~~Lrqee 144 (531)
T PF15450_consen 90 NQNQMQQLDKRLVEVREALTQIRRKQALQDSERKGSEQEAGLRLSKLQDMLRQEE 144 (531)
T ss_pred chhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 477777777777777666665 3333333321 13557777888899988755
No 210
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=34.89 E-value=7.8e+02 Score=28.60 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 320 KKHIEDLDSAWDNVTALFAKREENLIHA 347 (801)
Q Consensus 320 ~~~l~~l~~~w~~l~~~~~~r~~~L~~~ 347 (801)
..++..|..+|+....-+.+....|...
T Consensus 407 ~~rl~~L~~qWe~~R~pL~~e~r~lk~~ 434 (594)
T PF05667_consen 407 EQRLVELAQQWEKHRAPLIEEYRRLKEK 434 (594)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567777777777777666666666643
No 211
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=34.81 E-value=2.4e+02 Score=22.56 Aligned_cols=56 Identities=16% Similarity=0.263 Sum_probs=44.0
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 283 LKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKR 340 (801)
Q Consensus 283 ~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r 340 (801)
+..+..++......++.|+.....+-. +.++...+..+++.+..+-..|...+..-
T Consensus 6 Ll~Ir~dIk~vd~KVdaLq~~V~~l~~--~~~~v~~l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 6 LLVIRQDIKAVDDKVDALQTQVDDLES--NLPDVTELNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777888888888888888888876 45788888899988888888887755543
No 212
>PRK10869 recombination and repair protein; Provisional
Probab=34.62 E-value=7.7e+02 Score=28.43 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13767 99 GILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILR 140 (801)
Q Consensus 99 ~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l~~el~~ 140 (801)
.-.++|.-.-..+....+.+...+.++...+.+...++-.+.
T Consensus 185 ~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~~ 226 (553)
T PRK10869 185 ARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTT 226 (553)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555566666777666666655544443
No 213
>KOG0169|consensus
Probab=34.02 E-value=5.5e+02 Score=30.26 Aligned_cols=142 Identities=13% Similarity=0.204 Sum_probs=88.2
Q ss_pred HHHHHhHHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcC--CCCCHHHHHHHHHHhC----CCCCCCcccHHHHHHHhC
Q psy13767 641 FLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTK--FETSKLEMGAVADMFD----HDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 641 ~l~~~~~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g--~~~~~~e~~~~~~~~d----~d~~~g~i~~~ef~~~~~ 714 (801)
|-.+..... ++..+|..+-.+ .+.++..+|...+...+ ...+.++...++..+- .- ..+.++++.|...|.
T Consensus 197 ~~~~~~~rp-ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~-~~~~l~ldgF~~yL~ 273 (746)
T KOG0169|consen 197 FRKELTKRP-EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFR-RHGLLSLDGFTRYLF 273 (746)
T ss_pred HHHhhccCc-hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhcc-ccceecHHHHHHHhc
Confidence 444554444 777777776544 78999999999988654 3456777888887663 23 467799999999886
Q ss_pred CCcc-cCCCCCchhhhhHHHHhhhcccccccccceeEcCCCccccCCc-----chhHHHhhhcCccceecCccHhhHHHh
Q psy13767 715 PDWE-EKKPNTESEKIHDEVKRLVQLCTCRQKFRVFQVGEGKYRFGDS-----QKLRLVRILRSTVMVRVGGGWVALDEF 788 (801)
Q Consensus 715 ~~~~-~~~~~~~~~~i~~~v~~~~~~c~~~~~~~v~~~~~g~y~~g~~-----~~~~~~r~~~~~~~~rvg~g~~~~~~~ 788 (801)
+... +.+|. ...+.+.+..-.+ =+...-+++.|..|+. ...-++|.|+..|=+===+.|+...
T Consensus 274 S~~~~~fdp~--~~~V~qDM~qPLs-------HYFI~SSHNTYLtg~Ql~g~sSvegyI~ALk~GcR~vElD~Wdg~~-- 342 (746)
T KOG0169|consen 274 SPDCNPFDPI--HRKVHQDMDQPLS-------HYFISSSHNTYLTGDQLGGPSSVEGYIRALKKGCRCVELDCWDGPN-- 342 (746)
T ss_pred CccCCCCCcc--cchhhhcccCcch-------hheEeccccceecccccCCccccHHHHHHHHhCCeEEEEecccCCC--
Confidence 5433 22232 3445554443332 1334457888987654 4567899998642211114577665
Q ss_pred hhhcCCCCccc
Q psy13767 789 LIKNDPCRDNV 799 (801)
Q Consensus 789 ~~~~~~~~~~~ 799 (801)
.+||-.-|
T Consensus 343 ---~epvV~HG 350 (746)
T KOG0169|consen 343 ---GEPVVYHG 350 (746)
T ss_pred ---CCeeEecC
Confidence 56664433
No 214
>PF14658 EF-hand_9: EF-hand domain
Probab=33.88 E-value=48 Score=25.70 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=27.0
Q ss_pred HHHHHHHHhcccccCCC-CCcCHHHHHHHHHh
Q psy13767 648 KKSRLTDLFRKMDKNND-GLIPREDFVDGIIK 678 (801)
Q Consensus 648 ~~~~~~~~F~~~D~d~~-g~i~~~e~~~~l~~ 678 (801)
...++..+-+.+|++|. |.|+.+.|..+|+.
T Consensus 33 ~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 33 EESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 45688888999999998 99999999998863
No 215
>KOG0998|consensus
Probab=33.34 E-value=19 Score=43.42 Aligned_cols=65 Identities=26% Similarity=0.388 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcccccCCCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhC
Q psy13767 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714 (801)
Q Consensus 647 ~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~ 714 (801)
.....+.++|..+|++++|.|+..+....+...| +....+..+-...|.+ +.|.+++.+|.-+|.
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~-n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQ-NTGTLSKDEFALAMH 344 (847)
T ss_pred HHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchh-ccCcccccccchhhh
Confidence 3445677799999999999999999999988755 4566688888889999 999999999988775
No 216
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=33.23 E-value=4.9e+02 Score=25.77 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q psy13767 501 LDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEATSKRQHEVDSVRAS 561 (801)
Q Consensus 501 f~~~~~el~~Wl~~~e~~l~~~~~~~~~~d~~~~~~~l~~hk~~~~ei~~~~~~~~~l~~~ 561 (801)
|...+.+....+..+...|.. =...+..++....++..++..++.+...
T Consensus 109 l~~~L~ey~~~~~svk~~l~~------------R~~~~~~~~~a~~~l~kkk~~~~kl~~~ 157 (236)
T PF09325_consen 109 LGEPLREYLRYIESVKEALNR------------RDKKLIEYQNAEKELQKKKAQLEKLKAS 157 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 444555555555554444432 2234556667777777777777765443
No 217
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=32.53 E-value=8.5e+02 Score=28.31 Aligned_cols=89 Identities=8% Similarity=0.159 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHcC--CCChhHHH
Q psy13767 243 EKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICG--EPDKPEVK 320 (801)
Q Consensus 243 ~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~--~~~~~~i~ 320 (801)
..|...+-++..=+......+ ..-+..-+.++.+|+.....++.--..+.+++.... ++......
T Consensus 487 s~Yt~RIlEIv~NI~KQk~eI-------------~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaY 553 (594)
T PF05667_consen 487 SAYTRRILEIVKNIRKQKEEI-------------EKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAY 553 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHH
Confidence 467777766666666554433 233555677888888888888888888888886421 12233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 321 KHIEDLDSAWDNVTALFAKREENL 344 (801)
Q Consensus 321 ~~l~~l~~~w~~l~~~~~~r~~~L 344 (801)
..+..|+..++.|...+.+-..-.
T Consensus 554 K~La~lh~~c~~Li~~v~~tG~~~ 577 (594)
T PF05667_consen 554 KLLASLHENCSQLIETVEETGTIS 577 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 555666666666555555544333
No 218
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=31.62 E-value=3.4e+02 Score=23.42 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHH
Q psy13767 14 VVKAQLQEQKFLKKMLADRQHS 35 (801)
Q Consensus 14 ~v~~~l~~~~~l~~el~~~~~~ 35 (801)
.++.++..++.++.++......
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q 25 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQ 25 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333
No 219
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.47 E-value=5.4e+02 Score=25.73 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=21.5
Q ss_pred HHHhHHhhhhhccchHHHhhhhcCCcccHHHHHHHHHHHHHHHHHHHHhh
Q psy13767 392 LQQNRDDCKKADCNADAVQTFVNSLPEDDQEARTQLAEHEKFLRELAEKE 441 (801)
Q Consensus 392 L~~~~edlk~~l~~~e~~~r~~~~~~~d~~~l~~~l~~~~~~~~~l~~~~ 441 (801)
|+.||+.||.|+.+.+.-. ..++...--.|+....+|+.++++.....
T Consensus 54 LQR~RdQIK~W~~~~diKd--k~~L~e~Rk~IE~~MErFK~vEkesKtKa 101 (233)
T PF04065_consen 54 LQRLRDQIKTWLSSNDIKD--KKKLLENRKLIEEQMERFKVVEKESKTKA 101 (233)
T ss_pred HHHHHHHHHHHccCccccc--HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4444444555554432110 11222233445555556666666555443
No 220
>PLN02228 Phosphoinositide phospholipase C
Probab=31.44 E-value=1.6e+02 Score=33.75 Aligned_cols=115 Identities=17% Similarity=0.265 Sum_probs=71.1
Q ss_pred HHHHHHHHhcccccCCCCCcCHHHHHHHHHhcC-CC-CCHHHHHHHHHHhCCC---CCCCcccHHHHHHHhCCCcccCCC
Q psy13767 648 KKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTK-FE-TSKLEMGAVADMFDHD---YNPGLIDWKEFIAALRPDWEEKKP 722 (801)
Q Consensus 648 ~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g-~~-~~~~e~~~~~~~~d~d---~~~g~i~~~ef~~~~~~~~~~~~~ 722 (801)
...++..+|..+-. ++.++.++|...|.... .. .+...+..++..|... -..|.++++.|...|.+.....-+
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~~n~~~~ 99 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSDTNSPLP 99 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCcccCCCC
Confidence 44678888887753 36899999999998653 22 3455688888877542 024689999999999754322111
Q ss_pred CCchhhhhHHHHhhhcccccccccceeEcCCCccccCCc-----chhHHHhhhcCc
Q psy13767 723 NTESEKIHDEVKRLVQLCTCRQKFRVFQVGEGKYRFGDS-----QKLRLVRILRST 773 (801)
Q Consensus 723 ~~~~~~i~~~v~~~~~~c~~~~~~~v~~~~~g~y~~g~~-----~~~~~~r~~~~~ 773 (801)
....+.+.+..-. .-+...-+++.|..|+. ....+++.|...
T Consensus 100 --~~~~v~qdm~~PL-------s~YfI~SSHNTYL~g~Ql~~~ss~e~y~~aL~~G 146 (567)
T PLN02228 100 --MSGQVHHDMKAPL-------SHYFVYTGHNSYLTGNQVNSRSSVEPIVQALRKG 146 (567)
T ss_pred --ccccccccCCCch-------hhheeecccCccccCCcccCccCHHHHHHHHHcC
Confidence 1112322222222 12344558888987665 344588888853
No 221
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=31.11 E-value=7.3e+02 Score=27.07 Aligned_cols=146 Identities=14% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHhHHHHhhh-----CChhhHHHHHHHHHHHH--HHHHHH
Q psy13767 1 MVANQKPPSADYKVVKAQLQEQKFL-KKMLADRQHSMSSLFQMGNEVAAN-----ADPAERKAIERQLNELM--NRFDNL 72 (801)
Q Consensus 1 ~~~~~~~~~~d~~~v~~~l~~~~~l-~~el~~~~~~v~~l~~~g~~L~~~-----~~~~~~~~i~~~l~~L~--~rw~~L 72 (801)
++....++.+-+++|...-.+...| ...|+....++..|....+.|... ........|.+....|. ..+..+
T Consensus 234 ~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~ 313 (388)
T PF04912_consen 234 SLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPS 313 (388)
T ss_pred cccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHccCccHHHHHHHH
Q psy13767 73 NEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIA 152 (801)
Q Consensus 73 ~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~~ 152 (801)
.-.+-.|.+.|......+..|...+..+..=.......+..... .+..++.. |...+......+..|...-
T Consensus 314 lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~---~L~~ve~~------~~~N~~~i~~n~~~le~Ri 384 (388)
T PF04912_consen 314 LPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEE---LLNKVEEK------FKENMETIEKNVKKLEERI 384 (388)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHh
Q psy13767 153 SSL 155 (801)
Q Consensus 153 ~~L 155 (801)
..|
T Consensus 385 ~~L 387 (388)
T PF04912_consen 385 AKL 387 (388)
T ss_pred hcc
No 222
>PHA02562 46 endonuclease subunit; Provisional
Probab=30.66 E-value=8.7e+02 Score=27.86 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=4.1
Q ss_pred hHHhHHHHHHH
Q psy13767 170 KLQDTADRYGA 180 (801)
Q Consensus 170 ~~~~l~~r~~~ 180 (801)
.+..+....+.
T Consensus 307 ~i~~l~~~l~~ 317 (562)
T PHA02562 307 KLKELQHSLEK 317 (562)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 223
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=30.62 E-value=6.4e+02 Score=26.32 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 56 KAIERQLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKI 111 (801)
Q Consensus 56 ~~i~~~l~~L~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~l 111 (801)
..+...+..+...-..+...-..-...+..+......|...+..........+..+
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el 105 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEEL 105 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333333333333333334445444444444444444433
No 224
>PRK09343 prefoldin subunit beta; Provisional
Probab=30.36 E-value=3.8e+02 Score=23.64 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy13767 421 QEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQ 486 (801)
Q Consensus 421 ~~l~~~l~~~~~~~~~l~~~~~~v~~l~~~~~~Ll~~~~p~~~~~i~~~~~~l~~rw~~l~~~~~~ 486 (801)
..++..+.+.+....+|....+.-.-....|..|+...-++....+..+++.+..+-..+......
T Consensus 31 ~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~ 96 (121)
T PRK09343 31 SQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKK 96 (121)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666777766666666777777776655555555666666666544444444333
No 225
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=30.30 E-value=6.7e+02 Score=26.41 Aligned_cols=89 Identities=6% Similarity=-0.051 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy13767 424 RTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERLRNHLRSLQDLDS 503 (801)
Q Consensus 424 ~~~l~~~~~~~~~l~~~~~~v~~l~~~~~~Ll~~~~p~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~~~~~f~~ 503 (801)
..+.+++.+++.++...+..+.........+-....|.....+-..++.++.+...|..-+..-....++.......|..
T Consensus 89 ~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~ 168 (319)
T PF09789_consen 89 EELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKC 168 (319)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555554444444444443333333444444555566777777776666666666666666666666777
Q ss_pred HHHHHHHHH
Q psy13767 504 LLEELLEWL 512 (801)
Q Consensus 504 ~~~el~~Wl 512 (801)
.+..|..=|
T Consensus 169 K~~RLN~EL 177 (319)
T PF09789_consen 169 KAHRLNHEL 177 (319)
T ss_pred HHHHHHHHH
Confidence 777765433
No 226
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=29.67 E-value=1.8e+02 Score=27.14 Aligned_cols=40 Identities=30% Similarity=0.372 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHHHHHHHH
Q psy13767 207 VTDIKKKLERLNGLWNE--VQKATNDRGRSLEEALALAEKFWS 247 (801)
Q Consensus 207 ~~~i~~~l~~L~~~w~~--l~~~~~~r~~~L~~~~~~~~~f~~ 247 (801)
..++..+|.-|.+.|+. |..-+..+...|-.++.. +.|..
T Consensus 67 ~~D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~-~d~~~ 108 (157)
T PF07304_consen 67 VDDIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQA-RDYDA 108 (157)
T ss_dssp HHHHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHH-T-HHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHc-CCHHH
Confidence 36778888888888875 666666666666666665 45543
No 227
>PRK11546 zraP zinc resistance protein; Provisional
Probab=29.34 E-value=4.5e+02 Score=24.05 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhhcCcchh
Q psy13767 419 DDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGA 463 (801)
Q Consensus 419 d~~~l~~~l~~~~~~~~~l~~~~~~v~~l~~~~~~Ll~~~~p~~~ 463 (801)
+++.-.....-|++|..+....+..+-+-...-+.|+....|+..
T Consensus 45 T~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~ 89 (143)
T PRK11546 45 TTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSS 89 (143)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 455656666667888888888888888888888888888888753
No 228
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=29.14 E-value=3.6e+02 Score=22.99 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=43.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 8 PSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQLNELMNRFDNLNEGASQRM 80 (801)
Q Consensus 8 ~~~d~~~v~~~l~~~~~l~~el~~~~~~v~~l~~~g~~L~~~~~~~~~~~i~~~l~~L~~rw~~L~~~~~~r~ 80 (801)
+..+++.+...-++.+.+..+++..+..-+.+...-..+...+ .+...+...+..+...-..+...+..-.
T Consensus 24 ~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~--~~~~~l~~e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 24 DEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG--EDAEELKAEVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT--CCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777777777777777777776666665543 2245555555555555555554444433
No 229
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.87 E-value=3.7e+02 Score=22.94 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy13767 58 IERQLNELMN 67 (801)
Q Consensus 58 i~~~l~~L~~ 67 (801)
+..++..+..
T Consensus 68 Le~~~e~le~ 77 (105)
T cd00632 68 LKERLETIEL 77 (105)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 230
>KOG1265|consensus
Probab=28.54 E-value=2.3e+02 Score=33.71 Aligned_cols=86 Identities=15% Similarity=0.330 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHHHHhHHHHHHHHHhcccccCCCCCcCHHHHHHHHHhc----------CCCCCHHHHHHHHHHhCCC--
Q psy13767 631 NFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKT----------KFETSKLEMGAVADMFDHD-- 698 (801)
Q Consensus 631 ~f~f~~~~~~~l~~~~~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~----------g~~~~~~e~~~~~~~~d~d-- 698 (801)
.|.+..|.. |+..+. ...++.++|+.|-.++..++|..+|...|... -.+.....+..+++.+..|
T Consensus 204 ~f~~e~f~~-~l~klc-pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~ 281 (1189)
T KOG1265|consen 204 DFTLEKFYR-LLNKLC-PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSD 281 (1189)
T ss_pred hccHHHHHH-HHHhcC-CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchh
Confidence 456665544 444442 33678899999998888899999999988642 2344667789999988654
Q ss_pred -CCCCcccHHHHHHHhCCCcc
Q psy13767 699 -YNPGLIDWKEFIAALRPDWE 718 (801)
Q Consensus 699 -~~~g~i~~~ef~~~~~~~~~ 718 (801)
-..|.|+-+-|+..+.++-+
T Consensus 282 ~a~~gqms~dgf~ryl~gdEn 302 (1189)
T KOG1265|consen 282 NAEKGQMSTDGFVRYLMGDEN 302 (1189)
T ss_pred hhhccccchhhhHHHhhCCcc
Confidence 14789999999998876544
No 231
>PRK11637 AmiB activator; Provisional
Probab=28.49 E-value=8.4e+02 Score=26.97 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=10.8
Q ss_pred ccceecCccHhhHHHhhh
Q psy13767 773 TVMVRVGGGWVALDEFLI 790 (801)
Q Consensus 773 ~~~~rvg~g~~~~~~~~~ 790 (801)
|.-||.||..+.+..||.
T Consensus 410 ~fei~~~~~~vnP~~~l~ 427 (428)
T PRK11637 410 YFEIRRQGQAVNPQPWLG 427 (428)
T ss_pred EEEEEECCEEeChHHHhC
Confidence 356666666666666653
No 232
>KOG0964|consensus
Probab=27.13 E-value=1.2e+03 Score=28.46 Aligned_cols=42 Identities=31% Similarity=0.398 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHH
Q psy13767 501 LDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHK 542 (801)
Q Consensus 501 f~~~~~el~~Wl~~~e~~l~~~~~~~~~~d~~~~~~~l~~hk 542 (801)
....+..+..=+...+..|..+...++..-+..+.....+.+
T Consensus 479 l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k 520 (1200)
T KOG0964|consen 479 LRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELK 520 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhc
Confidence 444445555555666666655434445555555555554444
No 233
>KOG0977|consensus
Probab=26.77 E-value=9.9e+02 Score=27.25 Aligned_cols=56 Identities=9% Similarity=0.272 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 56 KAIERQLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKI 111 (801)
Q Consensus 56 ~~i~~~l~~L~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~l 111 (801)
..+...+..+..+|......+..-...+.............+..+..|+...|..+
T Consensus 116 ~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~ 171 (546)
T KOG0977|consen 116 TKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDEL 171 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 33445555555555554444333333333333333444555555555555555443
No 234
>COG3645 Uncharacterized phage-encoded protein [Function unknown]
Probab=26.41 E-value=30 Score=30.76 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=19.7
Q ss_pred cCCcchhHHHhhhc-CccceecCccHhhH
Q psy13767 758 FGDSQKLRLVRILR-STVMVRVGGGWVAL 785 (801)
Q Consensus 758 ~g~~~~~~~~r~~~-~~~~~rvg~g~~~~ 785 (801)
+|+ ..|..+|+ +.+|+++||+|..+
T Consensus 59 ige---~~l~~~L~e~~~l~~~~~~~n~p 84 (135)
T COG3645 59 IGE---NRLFAWLRENKYLIKRGGDKNLP 84 (135)
T ss_pred cCH---HHHHHHHHHCCEEEEccCCCCCC
Confidence 566 67788888 56999999999764
No 235
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.09 E-value=69 Score=28.83 Aligned_cols=61 Identities=21% Similarity=0.323 Sum_probs=44.1
Q ss_pred HHhcccccCCCCCcCHHHHHH--HHHhcCCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhCCCc
Q psy13767 654 DLFRKMDKNNDGLIPREDFVD--GIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRPDW 717 (801)
Q Consensus 654 ~~F~~~D~d~~g~i~~~e~~~--~l~~~g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~~~~ 717 (801)
-+|..++.| |.++..|... .+..-.+..+..++..++.....- |.-.|||..|-+.|....
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~-~~Ea~d~y~fts~l~r~L 96 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKENFGIDGEELDALIEAGEEA-GYEAIDLYSFTSVLKRHL 96 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhc
Confidence 467888665 5577777654 333445777888899999776666 777899999999985433
No 236
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=26.06 E-value=30 Score=14.59 Aligned_cols=6 Identities=67% Similarity=1.508 Sum_probs=4.1
Q ss_pred CccccC
Q psy13767 754 GKYRFG 759 (801)
Q Consensus 754 g~y~~g 759 (801)
|.|.||
T Consensus 2 gpy~fg 7 (8)
T PF08261_consen 2 GPYSFG 7 (8)
T ss_pred Cccccc
Confidence 667776
No 237
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=25.73 E-value=6.6e+02 Score=24.84 Aligned_cols=33 Identities=9% Similarity=0.151 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHccCccHHHHHHHHHHh
Q psy13767 123 KIQQRIREHDALHKEILRKKPDFTELTDIASSL 155 (801)
Q Consensus 123 ~v~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L 155 (801)
+++..+..-.....++......+.........+
T Consensus 122 svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl 154 (236)
T PF09325_consen 122 SVKEALNRRDKKLIEYQNAEKELQKKKAQLEKL 154 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444333333333333333333333333333
No 238
>KOG0971|consensus
Probab=25.72 E-value=1.3e+03 Score=28.08 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccCccccccCCCCCCCCCCCCCCCCCCCCCccChhHHHHHHHHHHHHHHHHHH
Q psy13767 533 TVERLIEEHKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWRNVWLLAWER 612 (801)
Q Consensus 533 ~~~~~l~~hk~~~~ei~~~~~~~~~l~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~~~~L~~~W~~L~~~~~~r 612 (801)
.+++.++.-+.+.--++.+...+..|...++- .. .+....+-|++....+..........+
T Consensus 942 ~~K~~~edaegL~~tle~re~eikeLkk~aKm-------kq------------eelSe~qvRldmaEkkLss~~k~~~h~ 1002 (1243)
T KOG0971|consen 942 ALKAEIEDAEGLGLTLEDRETEIKELKKSAKM-------KQ------------EELSEAQVRLDLAEKKLSSAAKDADHR 1002 (1243)
T ss_pred HHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHh-------hH------------HHHHHHHHHHHHHHHHhhhhhhhHhHH
Confidence 45566666677777888888888888777652 11 122234445555555555444444444
Q ss_pred HHHHHHHHHHHHHHHHhhcCCHHH
Q psy13767 613 QRRLQERLNYLIELEKVKNFSWDD 636 (801)
Q Consensus 613 ~~~L~~~l~~l~e~~~~~~f~f~~ 636 (801)
...+++.+......-+.+..-|++
T Consensus 1003 v~~~~ek~ee~~a~lr~Ke~efee 1026 (1243)
T KOG0971|consen 1003 VEKVQEKLEETQALLRKKEKEFEE 1026 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333333333433
No 239
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=25.47 E-value=4.3e+02 Score=22.56 Aligned_cols=84 Identities=20% Similarity=0.306 Sum_probs=59.8
Q ss_pred HhhhcCCCCCCChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 261 DNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKR 340 (801)
Q Consensus 261 ~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r 340 (801)
..+........+++.+..+-.+...+..+++..+...+.+...-..+... + .+...+..+...+...-..+......-
T Consensus 16 ~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~-~-~~~~~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 16 ENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKA-G-EDAEELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT-T-CCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC-c-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33433322345788888888888899999999998888888887777763 3 677888888888887777776665555
Q ss_pred HHHHHH
Q psy13767 341 EENLIH 346 (801)
Q Consensus 341 ~~~L~~ 346 (801)
...+..
T Consensus 94 e~~l~~ 99 (108)
T PF02403_consen 94 EEELNE 99 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 240
>KOG0976|consensus
Probab=25.41 E-value=1.2e+03 Score=27.73 Aligned_cols=49 Identities=6% Similarity=0.091 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHH----HHHHHHHHHHHHhhhhh
Q psy13767 504 LLEELLEWLAKCESHLLNLEAEPLPDDIPTVERL----IEEHKEFMEATSKRQHE 554 (801)
Q Consensus 504 ~~~el~~Wl~~~e~~l~~~~~~~~~~d~~~~~~~----l~~hk~~~~ei~~~~~~ 554 (801)
.++++.+.|......+.. ...++.....++.. -.+...++++|..-.-+
T Consensus 460 Qcnemv~rir~l~~sle~--qrKVeqe~emlKaen~rqakkiefmkEeiQethld 512 (1265)
T KOG0976|consen 460 QCNEMVDRIRALMDSLEK--QRKVEQEYEMLKAENERQAKKIEFMKEEIQETHLD 512 (1265)
T ss_pred HHHHHHHHHHHHhhChhh--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777776666654 33455555444433 33444566666654333
No 241
>KOG2391|consensus
Probab=25.39 E-value=5e+02 Score=27.31 Aligned_cols=27 Identities=11% Similarity=0.325 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCCCCCcccHHHHHHHh
Q psy13767 687 EMGAVADMFDHDYNPGLIDWKEFIAAL 713 (801)
Q Consensus 687 e~~~~~~~~d~d~~~g~i~~~ef~~~~ 713 (801)
-|+..+-.++..+.+|.|+++.|+.-.
T Consensus 314 aieD~i~~L~~~~r~G~i~l~~yLr~V 340 (365)
T KOG2391|consen 314 AIEDAIYSLGKSLRDGVIDLDQYLRHV 340 (365)
T ss_pred HHHHHHHHHHHHHhcCeeeHHHHHHHH
Confidence 355555566665577999999999865
No 242
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=24.79 E-value=4e+02 Score=22.03 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 427 LAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERLRN 493 (801)
Q Consensus 427 l~~~~~~~~~l~~~~~~v~~l~~~~~~Ll~~~~p~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~ 493 (801)
+.+...+...|......+..+...-..++....++ ..++..++.+...-..+...+..+...|..
T Consensus 6 ~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d--~~~~~el~~l~~~i~~~~~~~~~~lk~l~~ 70 (103)
T PF00804_consen 6 FDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQD--SELKRELDELTDEIKQLFQKIKKRLKQLSK 70 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666677777777777766544422 356666666666655555555555554443
No 243
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=24.67 E-value=62 Score=27.50 Aligned_cols=52 Identities=15% Similarity=0.076 Sum_probs=38.5
Q ss_pred CCCcCHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhCCC
Q psy13767 664 DGLIPREDFVDGIIKT--KFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRPD 716 (801)
Q Consensus 664 ~g~i~~~e~~~~l~~~--g~~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~~~ 716 (801)
||.++..|....-..+ -+.++..+...++..+... .....++.+|...+.+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEAL-EEEAPDLYEFTSLIKEH 66 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHh
Confidence 6999998886655432 2456788888888877766 66778999999988543
No 244
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=24.64 E-value=27 Score=28.63 Aligned_cols=10 Identities=40% Similarity=1.129 Sum_probs=7.9
Q ss_pred cCccHhhHHH
Q psy13767 778 VGGGWVALDE 787 (801)
Q Consensus 778 vg~g~~~~~~ 787 (801)
=||||.|+..
T Consensus 71 D~gGWITPsN 80 (87)
T PF15017_consen 71 DGGGWITPSN 80 (87)
T ss_pred CCCccccchh
Confidence 4899999764
No 245
>KOG1707|consensus
Probab=24.26 E-value=1.2e+02 Score=34.18 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=39.5
Q ss_pred HHHHHHHHhcccccCCCCCcCHHHHHHHHH-hcCCCCCHHHHHHHHHHhCC
Q psy13767 648 KKSRLTDLFRKMDKNNDGLIPREDFVDGII-KTKFETSKLEMGAVADMFDH 697 (801)
Q Consensus 648 ~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~-~~g~~~~~~e~~~~~~~~d~ 697 (801)
...-+.++|+..|.|+||.++-.|+...-+ .++.++...++..+-..++.
T Consensus 193 ~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e 243 (625)
T KOG1707|consen 193 CVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQE 243 (625)
T ss_pred HHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 346688999999999999999999987665 45888888877776655544
No 246
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.15 E-value=6e+02 Score=23.81 Aligned_cols=97 Identities=19% Similarity=0.218 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhcccChhhhhhHhhhHHhHHHHHHHHHHHHhhhhhhhhhhhccc
Q psy13767 120 DEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFLYNQLI 199 (801)
Q Consensus 120 d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~LW~~~~l~ 199 (801)
+.+.+...-.+...+..++...+..+..+...-..|.. .+....+...+..+......+...+..-+..
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~---~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~-------- 138 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSS---EPTNEELREEIEELEEEIEELEEKLEKLRSG-------- 138 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------
Confidence 44556666666777777777777777777777666654 3344556666666666655555544421110
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13767 200 LSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGR 233 (801)
Q Consensus 200 Ls~~~~~~~~i~~~l~~L~~~w~~l~~~~~~r~~ 233 (801)
....-......+...|.........|.+
T Consensus 139 ------~~~vs~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 139 ------SKPVSPEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001123445566666666666666554
No 247
>KOG0041|consensus
Probab=24.13 E-value=2.8e+02 Score=26.71 Aligned_cols=78 Identities=14% Similarity=0.248 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHh--HHHHHHHHHhcccccCCCCCcCHHHHHHHHHh--cCCCCCHHHHHHHHHH--hCCCCCCCccc
Q psy13767 632 FSWDDWRKRFLRFMN--HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIK--TKFETSKLEMGAVADM--FDHDYNPGLID 705 (801)
Q Consensus 632 f~f~~~~~~~l~~~~--~~~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~--~g~~~~~~e~~~~~~~--~d~d~~~g~i~ 705 (801)
+++.+++. ||.-+. ...-.++.+.+..|.|.||+|+..||--.+.. .|.--.+..+..++.. +|.. .-|.--
T Consensus 116 Idl~ELK~-mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~~LAr~~eVDVs-keGV~G 193 (244)
T KOG0041|consen 116 IDLMELKR-MMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLLRLARLSEVDVS-KEGVSG 193 (244)
T ss_pred ccHHHHHH-HHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHHHHHHhcccchh-hhhhhh
Confidence 45555543 555443 23345667777899999999999998766653 2433334445555544 7887 777776
Q ss_pred HHHHHH
Q psy13767 706 WKEFIA 711 (801)
Q Consensus 706 ~~ef~~ 711 (801)
-..|-.
T Consensus 194 AknFFe 199 (244)
T KOG0041|consen 194 AKNFFE 199 (244)
T ss_pred HHHHHH
Confidence 666655
No 248
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=23.98 E-value=7.1e+02 Score=25.41 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=44.1
Q ss_pred hHhHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy13767 441 EIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERLRNHLRSLQ 499 (801)
Q Consensus 441 ~~~v~~l~~~~~~Ll~~~~p~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~~~~ 499 (801)
...++.+...++.|+... |- +.+++++..|..+|..+.+.+.....++...-..+.
T Consensus 156 d~dvevLL~~ae~L~~vY-P~--~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~ 211 (259)
T PF08657_consen 156 DVDVEVLLRGAEKLCNVY-PL--PGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLE 211 (259)
T ss_pred cCCHHHHHHHHHHHHHhC-CC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788899999887765 32 368899999999999999999998888877644433
No 249
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=23.60 E-value=4.3e+02 Score=21.94 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=8.9
Q ss_pred HHHHHHHhhHHHHHHHHhH
Q psy13767 25 LKKMLADRQHSMSSLFQMG 43 (801)
Q Consensus 25 l~~el~~~~~~v~~l~~~g 43 (801)
+..+|......++.+....
T Consensus 3 l~~~l~~l~~d~~~l~~~~ 21 (94)
T PF05957_consen 3 LKAELEQLRADLEDLARSA 21 (94)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444544444444444443
No 250
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=23.22 E-value=5e+02 Score=23.17 Aligned_cols=90 Identities=21% Similarity=0.341 Sum_probs=50.9
Q ss_pred HHHHHHhhcCCHHHHHHHHH-HHHh-------HHHHHHHHHhcccccCC--CCCcCHHHHHHHHHhcC------CCCCH-
Q psy13767 623 LIELEKVKNFSWDDWRKRFL-RFMN-------HKKSRLTDLFRKMDKNN--DGLIPREDFVDGIIKTK------FETSK- 685 (801)
Q Consensus 623 l~e~~~~~~f~f~~~~~~~l-~~~~-------~~~~~~~~~F~~~D~d~--~g~i~~~e~~~~l~~~g------~~~~~- 685 (801)
++++.++..+-|..+|-++- +.+. -....+.++|+.+.-++ |..|+..++...+..+- .+...
T Consensus 6 ~~~l~~~n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~ 85 (127)
T PF09068_consen 6 MQELQDFNNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQ 85 (127)
T ss_dssp HHHGGGGTT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--
T ss_pred HHHHHHHhhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 44556666777776665332 2222 23356777888776543 57799999988776432 11111
Q ss_pred -------H----HHHHHHHHhCCCCCCCcccHHHHHHHh
Q psy13767 686 -------L----EMGAVADMFDHDYNPGLIDWKEFIAAL 713 (801)
Q Consensus 686 -------~----e~~~~~~~~d~d~~~g~i~~~ef~~~~ 713 (801)
. =+..+...||++ +.|.|.--.|-.++
T Consensus 86 i~~~~v~~a~~L~ln~Ll~vyD~~-rtG~I~vls~KvaL 123 (127)
T PF09068_consen 86 IPSRPVDLAVDLLLNWLLNVYDSQ-RTGKIRVLSFKVAL 123 (127)
T ss_dssp HH-----HHHHHHHHHHHHHH-TT---SEEEHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHhCCC-CCCeeehhHHHHHH
Confidence 1 145567899999 99999988886554
No 251
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=23.10 E-value=70 Score=29.74 Aligned_cols=66 Identities=15% Similarity=0.242 Sum_probs=40.8
Q ss_pred hhhHHHHhhhcccccccccceeEcCCCccccCCcchhHHHhhhc-Cc-------cceecCccHhhHHHhhhhcCCCCccc
Q psy13767 728 KIHDEVKRLVQLCTCRQKFRVFQVGEGKYRFGDSQKLRLVRILR-ST-------VMVRVGGGWVALDEFLIKNDPCRDNV 799 (801)
Q Consensus 728 ~i~~~v~~~~~~c~~~~~~~v~~~~~g~y~~g~~~~~~~~r~~~-~~-------~~~rvg~g~~~~~~~~~~~~~~~~~~ 799 (801)
.||.+|...... -|. +..|.-.+|.--...+..|.+-|+ .| +--|| +.|..+.||+.|.-=|.+.|
T Consensus 103 ~iDrVI~~vL~~--~~g---l~~Vl~qrY~~RgkSk~~MA~eL~~~hPew~~~TC~~RI-~~wL~~aE~~LY~pm~d~f~ 176 (176)
T PF06576_consen 103 FIDRVIGEVLAE--HPG---LINVLRQRYCGRGKSKRKMAEELNEKHPEWCLRTCRRRI-DWWLSIAEFMLYKPMCDAFG 176 (176)
T ss_pred HHHHHHHHHHHh--Ccc---hHHHHHHHHHcccccHHHHHHHHhccCCcccHHHHHHHH-HHHHHHHHHHHHHHHHHhcC
Confidence 377776655543 222 222334555544344577777777 34 34577 88999999999876666554
No 252
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=22.71 E-value=1.2e+03 Score=26.85 Aligned_cols=27 Identities=0% Similarity=0.009 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 463 ATVIKHWITIIQSRWEEVSSWAKQREE 489 (801)
Q Consensus 463 ~~~i~~~~~~l~~rw~~l~~~~~~r~~ 489 (801)
...+..++..+..++..+...+...+.
T Consensus 348 le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 348 LEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555555444333
No 253
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.49 E-value=4.3e+02 Score=21.52 Aligned_cols=59 Identities=15% Similarity=0.299 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHccCccHHHHHHH
Q psy13767 90 AKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDI 151 (801)
Q Consensus 90 ~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~l~~el~~~~~~~~~l~~~ 151 (801)
.+.|...+..+.--|..+-..+.+.+++..+ ++.+..+.+.++..+..++..+..+.+.
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s---~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAIRELPGIDRS---VEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3557777777777777777777776666555 4556667777777777776666655543
No 254
>KOG0977|consensus
Probab=22.43 E-value=1.2e+03 Score=26.65 Aligned_cols=26 Identities=4% Similarity=0.152 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhh
Q psy13767 531 IPTVERLIEEHKEFMEATSKRQHEVD 556 (801)
Q Consensus 531 ~~~~~~~l~~hk~~~~ei~~~~~~~~ 556 (801)
..+++.++.--..|..||..+..-++
T Consensus 362 ~~Elq~LlD~ki~Ld~EI~~YRkLLe 387 (546)
T KOG0977|consen 362 SVELQKLLDTKISLDAEIAAYRKLLE 387 (546)
T ss_pred HHHHHHhhchHhHHHhHHHHHHHHhc
Confidence 34556666666677777777764443
No 255
>PLN02222 phosphoinositide phospholipase C 2
Probab=22.13 E-value=2.3e+02 Score=32.62 Aligned_cols=112 Identities=12% Similarity=0.265 Sum_probs=70.4
Q ss_pred HHHHHHHhcccccCCCCCcCHHHHHHHHHhcCC--CCCHHHHHHHHHHhCCCCCCCcccHHHHHHHhCCCcccCCCCCch
Q psy13767 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKF--ETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRPDWEEKKPNTES 726 (801)
Q Consensus 649 ~~~~~~~F~~~D~d~~g~i~~~e~~~~l~~~g~--~~~~~e~~~~~~~~d~d~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 726 (801)
..++..+|..+-. ++.++.++|...|..... ..+.+.+..+++.+..-...+.++++.|...|.+.... +. ..
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~~n~--~~-~~ 98 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGDNNP--PL-AL 98 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCCCCC--CC-cc
Confidence 3578888888853 479999999999986543 24667788888876431145679999999999754321 11 11
Q ss_pred hhhhHHHHhhhcccccccccceeEcCCCccccCCc-----chhHHHhhhcC
Q psy13767 727 EKIHDEVKRLVQLCTCRQKFRVFQVGEGKYRFGDS-----QKLRLVRILRS 772 (801)
Q Consensus 727 ~~i~~~v~~~~~~c~~~~~~~v~~~~~g~y~~g~~-----~~~~~~r~~~~ 772 (801)
..+.+.+..-. .-+...-+++.|..|+. ....+++.|..
T Consensus 99 ~~v~qDm~~Pl-------s~YfI~SSHNTYL~g~Ql~~~ss~~~y~~aL~~ 142 (581)
T PLN02222 99 HEVHHDMDAPI-------SHYFIFTGHNSYLTGNQLSSDCSEVPIIDALKK 142 (581)
T ss_pred ccccccCCCch-------hhheeecccCccccCCcccCccCHHHHHHHHHc
Confidence 12222222222 12344457888887664 34467888875
No 256
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=21.93 E-value=1.2e+02 Score=23.58 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=33.5
Q ss_pred CCCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCC
Q psy13767 663 NDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYN 700 (801)
Q Consensus 663 ~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~d~d~~ 700 (801)
.++.+++..+...+...|+..++..+...+..++.+ |
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~-G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERD-G 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHC-C
Confidence 447899999999999999999999999999999998 5
No 257
>KOG4065|consensus
Probab=21.30 E-value=1.6e+02 Score=25.41 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=46.7
Q ss_pred CCCHHHHH-HHHHHhCCCCCCCcccHHHHHHHhCCC------cccCCCCCchhhhhHHHHhhhcccccccccceeEcCCC
Q psy13767 682 ETSKLEMG-AVADMFDHDYNPGLIDWKEFIAALRPD------WEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVFQVGEG 754 (801)
Q Consensus 682 ~~~~~e~~-~~~~~~d~d~~~g~i~~~ef~~~~~~~------~~~~~~~~~~~~i~~~v~~~~~~c~~~~~~~v~~~~~g 754 (801)
++++++++ ..|+..|-| +||++|==|.+.+++-. -...-|.++...+..+|+.+.. .-.+-++|
T Consensus 62 ~mtpeqlqfHYF~MHDld-knn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~--------DdDfN~DG 132 (144)
T KOG4065|consen 62 KMTPEQLQFHYFSMHDLD-KNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLD--------DDDFNGDG 132 (144)
T ss_pred hCCHHHHhhhhhhhhccC-cCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhc--------ccccCCCc
Confidence 45666554 466778999 99999999999988621 1112355666667777776654 22344678
Q ss_pred ccccCCc
Q psy13767 755 KYRFGDS 761 (801)
Q Consensus 755 ~y~~g~~ 761 (801)
.+.+||+
T Consensus 133 ~IDYgEf 139 (144)
T KOG4065|consen 133 VIDYGEF 139 (144)
T ss_pred eeeHHHH
Confidence 8777775
No 258
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=20.80 E-value=1.8e+03 Score=28.04 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q psy13767 13 KVVKAQLQEQ 22 (801)
Q Consensus 13 ~~v~~~l~~~ 22 (801)
+.++++++..
T Consensus 26 ~~iq~~l~~~ 35 (1109)
T PRK10929 26 KQITQELEQA 35 (1109)
T ss_pred HHHHHHHHHh
Confidence 4455555443
No 259
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=20.80 E-value=3.3e+02 Score=21.61 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhhh
Q psy13767 500 DLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEATSKRQHEV 555 (801)
Q Consensus 500 ~f~~~~~el~~Wl~~~e~~l~~~~~~~~~~d~~~~~~~l~~hk~~~~ei~~~~~~~ 555 (801)
.....+++...-|..++-.+.. +| +..-.....+.+.+..++...+..+
T Consensus 29 ~~e~~l~ea~~~l~qMe~E~~~-----~p--~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 29 EIERDLDEAEELLKQMELEVRS-----LP--PSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-----S---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----CC--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666777666542 22 2344455555566666666655544
No 260
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=20.28 E-value=1.4e+03 Score=26.47 Aligned_cols=70 Identities=13% Similarity=0.231 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHc-----CCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13767 271 VEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKIC-----GEPDKPEVKKHIEDLDSAWDNVTALFAKR 340 (801)
Q Consensus 271 ~d~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~-----~~~~~~~i~~~l~~l~~~w~~l~~~~~~r 340 (801)
.||+.+.....++..+..-...|.+.++.+......+.... ...+...+..++..+...+..+...+...
T Consensus 298 ~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 298 FDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46665555555555566655666666666666555544321 11234455555555555555554444433
Done!