RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13767
(801 letters)
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 106 bits (265), Expect = 3e-25
Identities = 47/341 (13%), Positives = 114/341 (33%), Gaps = 50/341 (14%)
Query: 4 NQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQLN 63
+ D V L++ + L+ ++ + + L + + + + ++ +
Sbjct: 27 ASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMT-SSAFDTSQVKDKRE 85
Query: 64 ELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEK 123
+ RF + A+ R L ++ + QF + W+ + + + + D
Sbjct: 86 TINGRFQRIKSMAAARRAKLNESHRLH-QFFRDMDDEESWIKEKKLLVSSED-YGRDLTG 143
Query: 124 IQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVE 183
+Q ++H L E+ +P + D L
Sbjct: 144 VQNLRKKHKRLEAELAAHEPAIQGVLDTGKKL---------------------------- 175
Query: 184 ASDNLGQYAFLYNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAE 243
+I+++L + W E+++ RG+ LEE+L +
Sbjct: 176 ----------------SDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEY-Q 218
Query: 244 KFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRAS 303
+F + ++ A + + + S++ AIQ + + + K V A+
Sbjct: 219 QFVANVEEEEAWINEKMTLVASEDYGDTLA-AIQGLLKKHEAFETDFTVHKDRVNDVCAN 277
Query: 304 GQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENL 344
G+ L+K + ++ L ++ A+R+ L
Sbjct: 278 GEDLIK-KNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKL 317
Score = 94.6 bits (235), Expect = 3e-21
Identities = 54/380 (14%), Positives = 130/380 (34%), Gaps = 62/380 (16%)
Query: 241 LAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQC 300
+ F + ++ L +++ L S++ + ++ + ++A+I + ++
Sbjct: 4 KQQNFNTGIKDFDFWLSEVEALLASEDYGK-DLASVNNLLKKHQLLEADISAHEDRLKDL 62
Query: 301 RASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHETLQR 360
+ LM D +VK E ++ + + ++ A R L ++ H+ +
Sbjct: 63 NSQADSLMT-SSAFDTSQVKDKRETINGRFQRIKSMAAARRAKL----NESHRLHQFFRD 117
Query: 361 KGEQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSLPEDD 420
+ E ++ + L + D D
Sbjct: 118 ------------------MDDEESWIKEKKLLVSSED------------------YGRDL 141
Query: 421 QEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEV 480
+ +H++ ELA E + +++ + G I+ + W+E+
Sbjct: 142 TGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI-GKEEIQQRLAQFVDHWKEL 200
Query: 481 SSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEE 540
A R +RL L Q + +EE W+ + + + + E D + ++ L+++
Sbjct: 201 KQLAAARGQRLEESLE-YQQFVANVEEEEAWINEKMTLVAS---EDYGDTLAAIQGLLKK 256
Query: 541 HKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWD 600
H+ F + + V+ V A + E L H + + + L
Sbjct: 257 HEAFETDFTVHKDRVNDVCA--NGEDLIKKNNH-------------HVENITAKMKGLKG 301
Query: 601 TWRNVWLLAWERQRRLQERL 620
++ A +R+ +L E
Sbjct: 302 KVSDLEKAAAQRKAKLDENS 321
Score = 71.1 bits (174), Expect = 2e-13
Identities = 38/207 (18%), Positives = 74/207 (35%), Gaps = 20/207 (9%)
Query: 416 LPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQS 475
+D L +H+ +++ E A ++ S D + +K I
Sbjct: 31 YGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFD-TSQVKDKRETING 89
Query: 476 RWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVE 535
R++ + S A R +L R L +++ W+ + + + +E D+ V+
Sbjct: 90 RFQRIKSMAAARRAKLNESHR-LHQFFRDMDDEESWIKEKKLLV---SSEDYGRDLTGVQ 145
Query: 536 RLIEEHKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRC 595
L ++HK + + + V + G + + G E R
Sbjct: 146 NLRKKHKRLEAELAAHEPAIQGVLDT-------------GKKLSDDNTIGKEEI--QQRL 190
Query: 596 RLLWDTWRNVWLLAWERQRRLQERLNY 622
D W+ + LA R +RL+E L Y
Sbjct: 191 AQFVDHWKELKQLAAARGQRLEESLEY 217
Score = 69.1 bits (169), Expect = 1e-12
Identities = 34/238 (14%), Positives = 85/238 (35%), Gaps = 47/238 (19%)
Query: 3 ANQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQL 62
+ + D V+ ++ K L+ LA + ++ + G +++ + + + I+++L
Sbjct: 132 VSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEE-IQQRL 190
Query: 63 NELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEE 122
+ ++ + L + A+ R LE+++ +QF + W+++ + +
Sbjct: 191 AQFVDHWKELKQLAAARGQRLEESLE-YQQFVANVEEEEAWINEKMTLVASEDY-GDTLA 248
Query: 123 KIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALV 182
IQ +++H+A + K ++ L+
Sbjct: 249 AIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHH-------------------- 288
Query: 183 EASDNLGQYAFLYNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALA 240
V +I K++ L G ++++KA R L+E A
Sbjct: 289 ------------------------VENITAKMKGLKGKVSDLEKAAAQRKAKLDENSA 322
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 104 bits (260), Expect = 2e-24
Identities = 56/344 (16%), Positives = 112/344 (32%), Gaps = 51/344 (14%)
Query: 2 VANQKPPSADYKVVKAQLQE-QKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIER 60
VA DY+ V + ++F + Q + ++ + +E+ + ++ I
Sbjct: 28 VAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINS-GHSDAATIAE 86
Query: 61 QLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTD 120
+ L + +L E R L + +F I + KK+ + + D
Sbjct: 87 WKDGLNEAWADLLELIDTRTQILAASYE-LHKFYHDAKEIFGRIQDKHKKLPEE--LGRD 143
Query: 121 EEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGA 180
+ ++ R H +I +L + A+ L D+A
Sbjct: 144 QNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKAD--------------- 188
Query: 181 LVEASDNLGQYAFLYNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALA 240
DI+K+ + W + A R L +
Sbjct: 189 ----------------------------DIQKRENEVLEAWKSLLDACESRRVRLVDTGD 220
Query: 241 LAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQC 300
F+S ++ +M + D+ + +QE P + +++ + IKAEID C
Sbjct: 221 KFR-FFSMVRDLMLWMEDVIRQIEAQEKPR-DVSSVELLMNNHQGIKAEIDARNDSFTTC 278
Query: 301 RASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENL 344
G+ L+ E+K+ + L + + R E L
Sbjct: 279 IELGKSLLA-RKHYASEEIKEKLLQLTEKRKEMIDKWEDRWEWL 321
Score = 93.9 bits (233), Expect = 6e-21
Identities = 47/320 (14%), Positives = 93/320 (29%), Gaps = 48/320 (15%)
Query: 242 AEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTK-PEVEQC 300
+ E+ + + + + S E + + + Q +E + V+
Sbjct: 8 LFQLNREVDDLEQWIAEREVVAGSHELGQ-DYEHVTMLQERFREFARDTGNIGQERVDTV 66
Query: 301 RASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHETLQR 360
+L+ G D + + + L+ AW ++ L R + L + E H+
Sbjct: 67 NHLADELIN-SGHSDAATIAEWKDGLNEAWADLLELIDTRTQIL----AASYELHKFYHD 121
Query: 361 KGEQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSLPEDD 420
AK I K + L D
Sbjct: 122 -----------AKEIFGRIQDKHKKLP--------------------------EELGRDQ 144
Query: 421 QEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEV 480
T H F ++ + A R+ D A I+ + W+ +
Sbjct: 145 NTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSL 204
Query: 481 SSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEE 540
+ R RL + S++ +L+ W+ +EA+ P D+ +VE L+
Sbjct: 205 LDACESRRVRLVDTGD-KFRFFSMVRDLMLWMEDVIR---QIEAQEKPRDVSSVELLMNN 260
Query: 541 HKEFMEATSKRQHEVDSVRA 560
H+ R +
Sbjct: 261 HQGIKAEIDARNDSFTTCIE 280
Score = 90.4 bits (224), Expect = 8e-20
Identities = 51/401 (12%), Positives = 114/401 (28%), Gaps = 88/401 (21%)
Query: 92 QFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDI 151
Q ++ + W+ + E E + D E + ++
Sbjct: 10 QLNREVDDLEQWIAEREVVAGSHE-LGQDYEHVTMLQERFREFARDTGNIG--------- 59
Query: 152 ASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTDIK 211
+R + +D L ++ S I
Sbjct: 60 -----------------------QERVDTVNHLADEL-----------INSGHSDAATIA 85
Query: 212 KKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAV 271
+ + LN W ++ + + R + L + L KF+ + + + ++D L E
Sbjct: 86 EWKDGLNEAWADLLELIDTRTQILAASYEL-HKFYHDAKEIFGRIQDKHKKL--PEELGR 142
Query: 272 EPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWD 331
+ ++ Q + +I +V Q + +L +++K ++ AW
Sbjct: 143 DQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWK 202
Query: 332 NVTALFAKREENLIHAMEKAMEFHETLQRKGEQGTITALFAKREENLIHAMEKAMEFHET 391
++ R L+ +K F + + + + +E E
Sbjct: 203 SLLDACESRRVRLVDTGDKFRFFSM---------------VRDLMLWMEDVIRQIEAQE- 246
Query: 392 LQQNRDDCKKADCNADAVQTFVNSLPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLA 451
P D + H+ E+ + I L
Sbjct: 247 ------------------------KPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELG 282
Query: 452 QRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERLR 492
+ +L + H IK + + + +E+ + R E LR
Sbjct: 283 KSLLARKHYASEE-IKEKLLQLTEKRKEMIDKWEDRWEWLR 322
Score = 63.8 bits (155), Expect = 5e-11
Identities = 34/217 (15%), Positives = 63/217 (29%), Gaps = 19/217 (8%)
Query: 416 LPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQS 475
L +D + +F R+ E+ T+ L+ S A I W +
Sbjct: 34 LGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAATIAEWKDGLNE 93
Query: 476 RWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVE 535
W ++ R + L L +E+ + L E L D TVE
Sbjct: 94 AWADLLELIDTRTQILAASYE-LHKFYHDAKEIFGRIQDKHKKL----PEELGRDQNTVE 148
Query: 536 RLIEEHKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRC 595
L H F +V ++ +L + R
Sbjct: 149 TLQRMHTTFEHDIQALGTQVRQLQED--AARLQAAYAGD------------KADDIQKRE 194
Query: 596 RLLWDTWRNVWLLAWERQRRLQERLNYLIELEKVKNF 632
+ + W+++ R+ RL + + V++
Sbjct: 195 NEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDL 231
Score = 40.7 bits (95), Expect = 0.001
Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 19/138 (13%)
Query: 496 RSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEF-MEATSKRQHE 554
L L+ +++L +W+ + + L D V L E +EF + + Q
Sbjct: 6 HRLFQLNREVDDLEQWI---AEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQER 62
Query: 555 VDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWRNVWLLAWERQR 614
VD+V L D L + G ++ L + W ++ L R +
Sbjct: 63 VDTVNH------LADELINSGHSDAATIAE---------WKDGLNEAWADLLELIDTRTQ 107
Query: 615 RLQERLNYLIELEKVKNF 632
L K
Sbjct: 108 ILAASYELHKFYHDAKEI 125
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain,
apoptosis, cell cycle, structural genomics; NMR {Mus
musculus} SCOP: d.82.4.1
Length = 97
Score = 97.1 bits (241), Expect = 2e-24
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 721 KPNTESEKIHDEVKRLVQ--LCTCRQKFRVFQVGEGKYRFGDSQKLRLVRILRS-TVMVR 777
+ + D VKR+ + C C KF V ++ +G+YR G+ K+ +R+L + VMVR
Sbjct: 2 SSGSSGNLLDDAVKRISEDPPCKCPTKFCVERLSQGRYRVGE--KILFIRMLHNKHVMVR 59
Query: 778 VGGGWVALDEFLIKNDPCR 796
VGGGW +L+K+DPCR
Sbjct: 60 VGGGWETFAGYLLKHDPCR 78
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 101 bits (252), Expect = 2e-23
Identities = 44/319 (13%), Positives = 90/319 (28%), Gaps = 47/319 (14%)
Query: 242 AEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCR 301
A++++ + A + + + + S E P E AI + + ++ ++Q
Sbjct: 6 AQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLK-RHLRQQRAVEDYGRNIKQLA 64
Query: 302 ASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHETLQRK 361
+ Q L+ G P+ ++ + +D + + + +R+ L E + +
Sbjct: 65 SRAQGLLS-AGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKL----ENMYHLFQLKRE- 118
Query: 362 GEQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSLPEDDQ 421
E I E E + +D
Sbjct: 119 ----------TDDLEQWISEKELVASSPE-------------------------MGQDFD 143
Query: 422 EARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVS 481
+ F RE E+ + L+ + A I W + W ++
Sbjct: 144 HVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLL 203
Query: 482 SWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEH 541
R + L L E+L + + L E + D T E H
Sbjct: 204 ELIDTRMQLLAASYD-LHRYFYTGAEILGLIDEKHREL----PEDVGLDASTAESFHRVH 258
Query: 542 KEFMEATSKRQHEVDSVRA 560
F +V +
Sbjct: 259 TAFERDVHLLGVQVQQFQD 277
Score = 100 bits (251), Expect = 3e-23
Identities = 40/348 (11%), Positives = 104/348 (29%), Gaps = 49/348 (14%)
Query: 3 ANQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQL 62
D + L+ ++ + D ++ L + + A E + I R
Sbjct: 27 VISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLS-AGHPEGEQIIRLQ 85
Query: 63 NELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEE 122
++ + L + A +R LE Q + + + W+ + E E + D +
Sbjct: 86 GQVDKHYAGLKDVAEERKRKLENMYH-LFQLKRETDDLEQWISEKELVASSPE-MGQDFD 143
Query: 123 KIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALV 182
+ + +E D + +R
Sbjct: 144 HVTLLRDKFRDFARET----------------------GAIGQERVDNVNAFIER----- 176
Query: 183 EASDNLGQYAFLYNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALA 242
++ S I + + LN +W ++ + + R + L + L
Sbjct: 177 ----------------LIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDL- 219
Query: 243 EKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRA 302
+++ ++ + + L E ++ + + ++ +V+Q +
Sbjct: 220 HRYFYTGAEILGLIDEKHRELP--EDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQD 277
Query: 303 SGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEK 350
+L ++ +++ +AW + A R L+ +K
Sbjct: 278 VATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADK 325
Score = 94.7 bits (235), Expect = 3e-21
Identities = 49/403 (12%), Positives = 114/403 (28%), Gaps = 90/403 (22%)
Query: 90 AKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELT 149
A+Q+ W+ + E + E IP DEE ++ H + + + +L
Sbjct: 6 AQQYYLDADEAEAWIGEQELYVISDE-IPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLA 64
Query: 150 DIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTD 209
A L+ +
Sbjct: 65 SRAQGLLSAGHPEGE--------------------------------------------Q 80
Query: 210 IKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPP 269
I + +++ + ++ +R R LE L + E + + + + +S E
Sbjct: 81 IIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQ-LKRETDDLEQWISEKELVASSPEMG 139
Query: 270 AVEPKAIQQQQYALKEIKAEIDQTKPE-VEQCRASGQKLMKICGEPDKPEVKKHIEDLDS 328
+ + + ++ E E V+ A ++L+ G + + + + L+
Sbjct: 140 -QDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLID-AGHSEAATIAEWKDGLNE 197
Query: 329 AWDNVTALFAKREENLIHAMEKAMEFHETLQRKGEQGTITALFAKREENLIHAMEKAMEF 388
W ++ L R + L + + F+ LI + +
Sbjct: 198 MWADLLELIDTRMQLLAASYDLHRYFYT---------------GAEILGLIDEKHRELP- 241
Query: 389 HETLQQNRDDCKKADCNADAVQTFVNSLPEDDQEARTQLAEHEKFLRELAEKEIEKDATI 448
+ D A + H F R++ ++
Sbjct: 242 -------------------------EDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQ 276
Query: 449 GLAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERL 491
+A R+ + A I++ + + W+ + R +L
Sbjct: 277 DVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQL 319
Score = 62.7 bits (152), Expect = 1e-10
Identities = 40/218 (18%), Positives = 77/218 (35%), Gaps = 21/218 (9%)
Query: 416 LPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQS 475
+P+D++ A L H + R + + AQ +L HP+G +I+ +
Sbjct: 32 IPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRL-QGQVDK 90
Query: 476 RWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVE 535
+ + A++R+ +L N L L ++L +W+++ E + + D V
Sbjct: 91 HYAGLKDVAEERKRKLENMYH-LFQLKRETDDLEQWISEKELVASS---PEMGQDFDHVT 146
Query: 536 RLIEEHKEFMEATSKRQHE-VDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPR 594
L ++ ++F T E VD+V A E+L D
Sbjct: 147 LLRDKFRDFARETGAIGQERVDNVNAFI--ERLIDAGHSEAATI-------------AEW 191
Query: 595 CRLLWDTWRNVWLLAWERQRRLQERLNYLIELEKVKNF 632
L + W ++ L R + L +
Sbjct: 192 KDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEI 229
Score = 61.1 bits (148), Expect = 4e-10
Identities = 34/239 (14%), Positives = 74/239 (30%), Gaps = 48/239 (20%)
Query: 2 VANQKPPSADYKVVKAQLQEQK-FLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIER 60
VA+ D+ V + + F ++ A Q + ++ + +A +E I
Sbjct: 132 VASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLI-DAGHSEAATIAE 190
Query: 61 QLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTD 120
+ L + +L E RM L + + ++ IL +D+ +++ E + D
Sbjct: 191 WKDGLNEMWADLLELIDTRMQLLAASYDL-HRYFYTGAEILGLIDEKHRELP--EDVGLD 247
Query: 121 EEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGA 180
+ R H A +++ + D+A+ L ++A
Sbjct: 248 ASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAE--------------- 292
Query: 181 LVEASDNLGQYAFLYNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEAL 239
I+ K + ++ W + A R L +
Sbjct: 293 ----------------------------AIQNKEQEVSAAWQALLDACAGRRTQLVDTA 323
Score = 38.8 bits (90), Expect = 0.005
Identities = 15/137 (10%), Positives = 39/137 (28%), Gaps = 18/137 (13%)
Query: 496 RSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEATSKRQHEV 555
Q +E W+ L + ++ +P D +++ H A +
Sbjct: 4 NEAQQYYLDADEAEAWI---GEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNI 60
Query: 556 DSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWRNVWLLAWERQRR 615
+ + + L G + + + + +A ER+R+
Sbjct: 61 KQLASR--AQGLLSAGHPEGEQI-------------IRLQGQVDKHYAGLKDVAEERKRK 105
Query: 616 LQERLNYLIELEKVKNF 632
L+ + + +
Sbjct: 106 LENMYHLFQLKRETDDL 122
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 91.5 bits (226), Expect = 5e-19
Identities = 83/524 (15%), Positives = 161/524 (30%), Gaps = 74/524 (14%)
Query: 197 QLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATL 256
+ V+DI L ++ + R LE LAEKF + +
Sbjct: 327 PAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWT 386
Query: 257 RDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDK 316
+ L ++ I+ + ++++ + VEQ A Q+L ++ D
Sbjct: 387 DGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYY-DS 445
Query: 317 PEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHETLQRKGEQGTITALFAKREE 376
P V + + WDN+ AL KR E L + + +AKR
Sbjct: 446 PSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLE----------YAKRAA 495
Query: 377 NLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSLPEDDQEARTQLAEHEKFLRE 436
+ ME AME LQ V+++ E + HE+F
Sbjct: 496 PFNNWMEGAME---DLQD---------------TFIVHTIEE----IQGLTTAHEQFKAT 533
Query: 437 LAEKEIEKDATIGLAQRI------LVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREER 490
L + + E+ A +G+ + + I +WE V +R++
Sbjct: 534 LPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQA 593
Query: 491 LRNHLRSLQDLDSLLEELLEWLAKCESHLLNLE---AEPLPDDIPTVERLIEEHKEFMEA 547
L Q + L ++ + + T+E + +++ ++
Sbjct: 594 LMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKS 653
Query: 548 TSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWRNVWL 607
+ ++D + E + + F N + R W
Sbjct: 654 IVNYKPKIDQL------EGDHQQI-------------QEALIFDNKHTNYTMEHIRVGWE 694
Query: 608 LAWERQRRLQERLNYLIELEKVKNFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLI 667
R + I K S + + F D+ G++
Sbjct: 695 QLLTTIARTINEVENQILTRDAKGIS------------QEQMNEFRASFNHFDRKKTGMM 742
Query: 668 PREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIA 711
EDF +I + + E + + D + G++ ++ FI
Sbjct: 743 DCEDFRACLISMGYNMGEAEFARIMSIVDPNRM-GVVTFQAFID 785
Score = 88.0 bits (217), Expect = 5e-18
Identities = 63/526 (11%), Positives = 165/526 (31%), Gaps = 90/526 (17%)
Query: 4 NQKPPSADYKVVKAQLQE-----QKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAI 58
+ P + ++ +L++ + + ++ + + ++ + PA +
Sbjct: 274 ENRAPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSE 333
Query: 59 ERQLNELMNRFDNLNEGASQRMDALEQAMA-------VAKQFQDKLTGILDWLDKSEKKI 111
+ ++++ N + L + + L + +A++F+ K + W D E +
Sbjct: 334 GKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAML 393
Query: 112 KDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKL 171
+ + +I+ +++H+A ++ + ++ IA L L D + V +
Sbjct: 394 QQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPS-VNARC 452
Query: 172 QDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDR 231
Q D++ L + ++ LER L + + +
Sbjct: 453 QKICDQWDNLGALTQK----------------------RREALERTEKLLETIDQLYLEY 490
Query: 232 GRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEID 291
+ E +LQ + + IQ A ++ KA +
Sbjct: 491 AKRAAPFNNWMEGAMEDLQD-----TFIVHTIEE----------IQGLTTAHEQFKATLP 535
Query: 292 QTKPEVEQCRASGQKLMKICGE------PDKPEVKKHIEDLDSAWDNVTALFAKREENLI 345
E + ++ KI P ++++ W++V L +R++ L+
Sbjct: 536 DADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALM 595
Query: 346 HAMEKAMEFHETLQRKGEQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCN 405
+ + E +A +Q ++ +
Sbjct: 596 EEHARQQQN--------------------ERLRKQFGAQANVIGPWIQTKMEEIGRIS-- 633
Query: 406 ADAVQTFVNSLPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATV 465
E QL ++ + + + + D G Q+I D
Sbjct: 634 -----------IEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKH- 681
Query: 466 IKHWITIIQSRWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEW 511
+ + I+ WE++ + + + N + + E++ E+
Sbjct: 682 TNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMNEF 727
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 83.0 bits (205), Expect = 3e-18
Identities = 40/255 (15%), Positives = 91/255 (35%), Gaps = 42/255 (16%)
Query: 241 LAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQC 300
+ + F +L A L Q + S++ P +Q IK EID + ++
Sbjct: 1 MEQAFLQDLDDFQAWLSITQKAVASEDMPE-SLPEAEQLLQQHAGIKDEIDGHQDSYQRV 59
Query: 301 RASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHETLQR 360
+ SG+K+++ +P+ + + +E LD+ WD + ++ R L + + Q
Sbjct: 60 KESGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQ- 118
Query: 361 KGEQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSLPEDD 420
E + E + + P+
Sbjct: 119 ---------------------AEAILSNQEYTLAHLE------------------PPDSL 139
Query: 421 QEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEV 480
+ A + + E FL + + + + +++ + + IK + +I+ R +
Sbjct: 140 EAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDK-IKEKVQLIEDRHRKN 198
Query: 481 SSWAKQREERLRNHL 495
+ A++ LR++L
Sbjct: 199 NEKAQEASVLLRDNL 213
Score = 78.4 bits (193), Expect = 2e-16
Identities = 35/205 (17%), Positives = 70/205 (34%), Gaps = 19/205 (9%)
Query: 416 LPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQS 475
+PE EA L +H E+ + ++++ ++ + + +
Sbjct: 28 MPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDT 87
Query: 476 RWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVE 535
W+ + + R L L Q+ ++ L+ E L +LE PD + E
Sbjct: 88 GWDALGRMWESRSHTLAQCLG-FQEFQKDAKQAEAILSNQEYTLAHLE---PPDSLEAAE 143
Query: 536 RLIEEHKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRC 595
I + ++F+ + + +V S S KL Y + +
Sbjct: 144 AGIRKFEDFLGSMENNRDKVLSPVD--SGNKLVAEGNLYSDKI-------------KEKV 188
Query: 596 RLLWDTWRNVWLLAWERQRRLQERL 620
+L+ D R A E L++ L
Sbjct: 189 QLIEDRHRKNNEKAQEASVLLRDNL 213
Score = 77.2 bits (190), Expect = 4e-16
Identities = 35/260 (13%), Positives = 85/260 (32%), Gaps = 47/260 (18%)
Query: 90 AKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELT 149
+ F L WL ++K + ++ P + +Q +++H + EI + + +
Sbjct: 2 EQAFLQDLDDFQAWLSITQKAVASEDM-PESLPEAEQLLQQHAGIKDEIDGHQDSYQRVK 60
Query: 150 DIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTD 209
+ ++I
Sbjct: 61 ESG-------------------------------------------EKVIQGQTDPEYLL 77
Query: 210 IKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPP 269
+ ++LE L+ W+ + + R +L + L ++F + + A L + + L EPP
Sbjct: 78 LGQRLEGLDTGWDALGRMWESRSHTLAQCLGF-QEFQKDAKQAEAILSNQEYTLAHLEPP 136
Query: 270 AVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSA 329
A + ++ ++ + +V SG KL+ G ++K+ ++ ++
Sbjct: 137 DSLE-AAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVA-EGNLYSDKIKEKVQLIEDR 194
Query: 330 WDNVTALFAKREENLIHAME 349
+ L +E
Sbjct: 195 HRKNNEKAQEASVLLRDNLE 214
Score = 71.8 bits (176), Expect = 2e-14
Identities = 32/184 (17%), Positives = 62/184 (33%), Gaps = 3/184 (1%)
Query: 3 ANQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQL 62
+ + LQ+ +K + Q S + + G +V E + ++L
Sbjct: 23 VASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRL 82
Query: 63 NELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEE 122
L +D L R L Q + ++FQ L E + +E P E
Sbjct: 83 EGLDTGWDALGRMWESRSHTLAQCLG-FQEFQKDAKQAEAILSNQEYTLAHLEP-PDSLE 140
Query: 123 KIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALV 182
+ IR+ + + + D + L+ G + + +K+Q DR+
Sbjct: 141 AAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAE-GNLYSDKIKEKVQLIEDRHRKNN 199
Query: 183 EASD 186
E +
Sbjct: 200 EKAQ 203
Score = 42.2 bits (99), Expect = 3e-04
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 17/124 (13%)
Query: 499 QDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEATSKRQHEVDSV 558
Q L++ WL+ + + +E +P+ +P E+L+++H + Q V
Sbjct: 3 QAFLQDLDDFQAWLSITQKAV---ASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRV 59
Query: 559 RASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWRNVWLLAWERQRRLQE 618
+ S EK+ E R L W + + R L +
Sbjct: 60 KESG--EKVIQGQTD------------PEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQ 105
Query: 619 RLNY 622
L +
Sbjct: 106 CLGF 109
Score = 39.5 bits (92), Expect = 0.002
Identities = 11/73 (15%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 15 VKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQLNELMNRFDNLNE 74
+A +++ + + + + + S GN++ A + I+ ++ + +R NE
Sbjct: 142 AEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLY-SDKIKEKVQLIEDRHRKNNE 200
Query: 75 GASQRMDALEQAM 87
A + L +
Sbjct: 201 KAQEASVLLRDNL 213
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of
spectrin, alpha-helical linker region, 3-helix coiled
coil, structural protein; 2.00A {Gallus gallus} SCOP:
a.7.1.1 a.7.1.1
Length = 216
Score = 81.5 bits (201), Expect = 1e-17
Identities = 41/260 (15%), Positives = 92/260 (35%), Gaps = 48/260 (18%)
Query: 90 AKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELT 149
+ F + WL + E + + D + +++H L +I + +L
Sbjct: 5 QQNFNTGIKDFDFWLSEVEALLASED-YGKDLASVNNLLKKHQLLEADISAHEDRLKDLN 63
Query: 150 DIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTD 209
A SLM D +
Sbjct: 64 SQADSLMTSSAFDTS--------------------------------------------Q 79
Query: 210 IKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPP 269
+K K E +NG + ++ R L E+ L + F+ ++ + +++ + ++S++
Sbjct: 80 VKDKRETINGRFQRIKSMAAARRAKLNESHRLHQ-FFRDMDDEESWIKEKKLLVSSEDYG 138
Query: 270 AVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSA 329
+ +Q + K ++AE+ +P ++ +G+KL K E+++ +
Sbjct: 139 R-DLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSD-DNTIGKEEIQQRLAQFVDH 196
Query: 330 WDNVTALFAKREENLIHAME 349
W + L A R + L ++E
Sbjct: 197 WKELKQLAAARGQRLEESLE 216
Score = 75.0 bits (184), Expect = 2e-15
Identities = 33/254 (12%), Positives = 83/254 (32%), Gaps = 43/254 (16%)
Query: 242 AEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCR 301
+ F + ++ L +++ L S++ + ++ + ++A+I + ++
Sbjct: 5 QQNFNTGIKDFDFWLSEVEALLASEDYGK-DLASVNNLLKKHQLLEADISAHEDRLKDLN 63
Query: 302 ASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHETLQRK 361
+ LM D +VK E ++ + + ++ A R L ++ H+ +
Sbjct: 64 SQADSLMTS-SAFDTSQVKDKRETINGRFQRIKSMAAARRAKL----NESHRLHQFFRD- 117
Query: 362 GEQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSLPEDDQ 421
+ E ++ + L + D D
Sbjct: 118 -----------------MDDEESWIKEKKLLVSSED------------------YGRDLT 142
Query: 422 EARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVS 481
+ +H++ ELA E + +++ + I+ + W+E+
Sbjct: 143 GVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEE-IQQRLAQFVDHWKELK 201
Query: 482 SWAKQREERLRNHL 495
A R +RL L
Sbjct: 202 QLAAARGQRLEESL 215
Score = 73.8 bits (181), Expect = 6e-15
Identities = 31/237 (13%), Positives = 76/237 (32%), Gaps = 47/237 (19%)
Query: 3 ANQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQL 62
+ D V L++ + L+ ++ + + L + + + + ++ +
Sbjct: 26 LASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMT-SSAFDTSQVKDKR 84
Query: 63 NELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEE 122
+ RF + A+ R L ++ + QF + W+ + + + + D
Sbjct: 85 ETINGRFQRIKSMAAARRAKLNESHRLH-QFFRDMDDEESWIKEKKLLVSSED-YGRDLT 142
Query: 123 KIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALV 182
+Q ++H L E+ +P + D L +
Sbjct: 143 GVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKE------------------ 184
Query: 183 EASDNLGQYAFLYNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEAL 239
+I+++L + W E+++ RG+ LEE+L
Sbjct: 185 --------------------------EIQQRLAQFVDHWKELKQLAAARGQRLEESL 215
Score = 69.2 bits (169), Expect = 2e-13
Identities = 42/231 (18%), Positives = 81/231 (35%), Gaps = 22/231 (9%)
Query: 392 LQQNRDDCKKADCNADAVQTFVNS--LPEDDQEARTQLAEHEKFLRELAEKEIEKDATIG 449
Q K D V+ + S +D L +H+ +++ E
Sbjct: 5 QQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNS 64
Query: 450 LAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERLRNHLRSLQDLDSLLEELL 509
A ++ S D + +K I R++ + S A R +L R L +++
Sbjct: 65 QADSLMTSSAFD-TSQVKDKRETINGRFQRIKSMAAARRAKLNESHR-LHQFFRDMDDEE 122
Query: 510 EWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEATSKRQHEVDSVRASPSREKLND 569
W+ + + + + E D+ V+ L ++HK + + + V + +KL+D
Sbjct: 123 SWIKEKKLLVSS---EDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTG--KKLSD 177
Query: 570 NLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWRNVWLLAWERQRRLQERL 620
+ R D W+ + LA R +RL+E L
Sbjct: 178 DNTIGKEEI-------------QQRLAQFVDHWKELKQLAAARGQRLEESL 215
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 84.5 bits (208), Expect = 3e-17
Identities = 55/362 (15%), Positives = 120/362 (33%), Gaps = 42/362 (11%)
Query: 208 TDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQE 267
+DI +RL ++ + R LE LAEKF + + + L ++
Sbjct: 99 SDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKD 158
Query: 268 PPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLD 327
+ ++ + ++++ + VEQ A Q+L ++ D V + +
Sbjct: 159 YESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNEL-DYHDAVNVNDRCQKIC 217
Query: 328 SAWDNVTALFAKREENLIHAMEKAMEFHETLQRKGEQGTITALFAKREENLIHAMEKAME 387
WD + L KR E L + + + FAKR + ME AME
Sbjct: 218 DQWDRLGTLTQKRREALERMEKLLETIDQ----------LHLEFAKRAAPFNNWMEGAME 267
Query: 388 FHETLQQNRDDCKKADCNADAVQTFVNSLPEDDQEARTQLAEHEKFLRELAEKEIEKDAT 447
+ + + +E ++ + HE+F L E + E+ +
Sbjct: 268 DLQDMF----------------------IVHSIEEIQSLITAHEQFKATLPEADGERQSI 305
Query: 448 IGLAQRILVK------SHPDGATVIKHWITIIQSRWEEVSSWAKQREERLRNHLRSLQDL 501
+ + + + ++++W++V R++ L+ L
Sbjct: 306 MAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHAN 365
Query: 502 DSLLEELLEWLAKCESHLLNLE---AEPLPDDIPTVERLIEEHKEFMEATSKRQHEVDSV 558
+ L + + N A +E + + K++ ++ +D +
Sbjct: 366 ERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKL 425
Query: 559 RA 560
Sbjct: 426 EG 427
Score = 84.2 bits (207), Expect = 3e-17
Identities = 57/495 (11%), Positives = 144/495 (29%), Gaps = 93/495 (18%)
Query: 13 KVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQLNELMNRFDNL 72
K ++QE+ L+ Q + + + ++ ++L + ++
Sbjct: 59 KHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEW 118
Query: 73 NEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHD 132
+R++ LE A++F+ K + W E+ + + +++ +R+H+
Sbjct: 119 LLNEIRRLERLEHL---AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHE 175
Query: 133 ALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYA 192
A ++ + ++ IA L L D
Sbjct: 176 AFESDLAAHQDRVEQIAAIAQELNELDYHDAV---------------------------- 207
Query: 193 FLYNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSV 252
++ + +++ W+ + T R +LE L E
Sbjct: 208 ----------------NVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEF 251
Query: 253 MATLRDLQDNLNSQEPPAVEP------KAIQQQQYALKEIKAEIDQTKPEVEQCRASGQK 306
+ + + + IQ A ++ KA + + E + A +
Sbjct: 252 AKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNE 311
Query: 307 LMKIC------GEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHETLQR 360
+ K+ P +++L + WD V L R+++L + + +
Sbjct: 312 VEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRR- 370
Query: 361 KGEQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSLPEDD 420
+A +Q + ++ S +
Sbjct: 371 -------------------QFAAQANAIGPWIQ-------------NKMEEIARSSIQIT 398
Query: 421 QEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEV 480
Q+ + +++ + + D G Q I D + + I+ WE +
Sbjct: 399 GALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFD-NKHTNYTMEHIRVGWELL 457
Query: 481 SSWAKQREERLRNHL 495
+ + + +
Sbjct: 458 LTTIARTINEVETQI 472
Score = 69.1 bits (168), Expect = 2e-12
Identities = 71/446 (15%), Positives = 147/446 (32%), Gaps = 51/446 (11%)
Query: 233 RSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPP----AVEPKAIQQQQYALKEIKA 288
+E L E++ ++ +R L ++ P A++ K + Y K K
Sbjct: 4 AVNQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKH-KP 62
Query: 289 EIDQTKPEVEQCRASGQKLMKICGEPD-KPEVKKHIEDLDSAWDNVTALFAKREENLIHA 347
Q K ++E + Q ++I P P K + D+ AW + EE L++
Sbjct: 63 PKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNE 122
Query: 348 MEKAMEFHETLQRKGEQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNAD 407
+ + +E+ E +Q + +
Sbjct: 123 IRR-------------------------------LERLEHLAEKFRQKASTHETWAYGKE 151
Query: 408 AVQTFVNSLPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIK 467
+ + E R L +HE F +LA + + +AQ + + D A +
Sbjct: 152 QILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHD-AVNVN 210
Query: 468 HWITIIQSRWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEA--- 524
I +W+ + + ++R E L + L+ +D L E + A + +
Sbjct: 211 DRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQ 270
Query: 525 -EPLPDDIPTVERLIEEHKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGS 583
+ I ++ LI H++F + E S+ A + ++ + Y R
Sbjct: 271 DMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAI--QNEVEKVIQSYNIRISS--- 325
Query: 584 KGAEPQFRNPRCRLLWDTWRNVWLLAWERQRRLQERLNYLIELEKVKNFSWDDWRKRFLR 643
+ L W V L R + LQE L E+++ +
Sbjct: 326 ---SNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRR-QFAAQANAIGP 381
Query: 644 FMNHKKSRLTDLFRKMDKNNDGLIPR 669
++ +K + ++ + + +
Sbjct: 382 WIQNKMEEIARSSIQITGALEDQMNQ 407
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 79.3 bits (195), Expect = 2e-16
Identities = 35/252 (13%), Positives = 86/252 (34%), Gaps = 46/252 (18%)
Query: 1 MVANQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIER 60
++ + SA V+A L++ + + LA Q + + + E+ D + +
Sbjct: 36 ILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNE-LDYHDAVNVND 94
Query: 61 QLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQD-------KLTGILDWLDKSEKKIKD 113
+ ++ +++D L +R +ALE+ + + + +W++ + + ++D
Sbjct: 95 RCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQD 154
Query: 114 MELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQD 173
M I E+IQ I H+ + + + I + + ++ +
Sbjct: 155 MF-IVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSN--- 210
Query: 174 TADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGR 233
++ L W++V++ R +
Sbjct: 211 ----------------------------------PYSTVTMDELRTKWDKVKQLVPIRDQ 236
Query: 234 SLEEALALAEKF 245
SL+E LA
Sbjct: 237 SLQEELARQHAN 248
Score = 73.9 bits (181), Expect = 8e-15
Identities = 39/292 (13%), Positives = 92/292 (31%), Gaps = 56/292 (19%)
Query: 75 GASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDAL 134
G+S + LE+ +A++F+ K + W E+ + + +++ +R+H+A
Sbjct: 1 GSSNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAF 60
Query: 135 HKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFL 194
++ + ++ IA L L
Sbjct: 61 ESDLAAHQDRVEQIAAIAQELNEL------------------------------------ 84
Query: 195 YNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMA 254
+ ++ + +++ W+ + T R +LE L E
Sbjct: 85 --------DYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAK 136
Query: 255 TLRDLQDNLNSQEPPAVEP------KAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLM 308
+ + + + IQ A ++ KA + + E + A ++
Sbjct: 137 RAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVE 196
Query: 309 KICGE------PDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEF 354
K+ P +++L + WD V L R+++L + +
Sbjct: 197 KVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHAN 248
Score = 69.7 bits (170), Expect = 2e-13
Identities = 44/219 (20%), Positives = 79/219 (36%), Gaps = 13/219 (5%)
Query: 414 NSLPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITII 473
+ E R L +HE F +LA + + +AQ L + A + I
Sbjct: 41 DYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQE-LNELDYHDAVNVNDRCQKI 99
Query: 474 QSRWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAK----CESHLLNLEAEPLPD 529
+W+ + + ++R E L + L+ +D L E + A E + +L+ +
Sbjct: 100 CDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVH 159
Query: 530 DIPTVERLIEEHKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQ 589
I ++ LI H++F + E S+ A + ++ + Y R
Sbjct: 160 SIEEIQSLITAHEQFKATLPEADGERQSIMA--IQNEVEKVIQSYNIRISS------SNP 211
Query: 590 FRNPRCRLLWDTWRNVWLLAWERQRRLQERLNYLIELEK 628
+ L W V L R + LQE L E+
Sbjct: 212 YSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANER 250
Score = 40.4 bits (94), Expect = 0.001
Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 18/169 (10%)
Query: 489 ERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEAT 548
RL + W E LL + + + V L+ +H+ F
Sbjct: 7 RRLERLEHLAEKFRQKASTHETWAYGKEQILL--QKDYESASLTEVRALLRKHEAFESDL 64
Query: 549 SKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWRNVWLL 608
+ Q V+ + A ++LN+ H + N RC+ + D W + L
Sbjct: 65 AAHQDRVEQIAAI--AQELNELDYH-------------DAVNVNDRCQKICDQWDRLGTL 109
Query: 609 AWERQRRLQERLNYLIELEKVKNFSWDDWRKRFLRFMNHKKSRLTDLFR 657
+R+ L+ L ++++ + F +M L D+F
Sbjct: 110 TQKRREALERMEKLLETIDQLH-LEFAKRAAPFNNWMEGAMEDLQDMFI 157
Score = 32.0 bits (72), Expect = 0.73
Identities = 12/86 (13%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 15 VKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVA------ANADPAERKAIERQLNELMNR 68
+++ + + K L + S+ + NEV + ++EL +
Sbjct: 164 IQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTK 223
Query: 69 FDNLNEGASQRMDALEQAMAVAKQFQ 94
+D + + R +L++ +A +
Sbjct: 224 WDKVKQLVPIRDQSLQEELARQHANE 249
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 73.4 bits (180), Expect = 7e-15
Identities = 30/184 (16%), Positives = 70/184 (38%), Gaps = 4/184 (2%)
Query: 3 ANQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQL 62
+ + D +A L+ + + + R + + Q G ++ A+ A + I+++L
Sbjct: 36 VSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAHGHYASPE-IKQKL 94
Query: 63 NELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEE 122
+ L +L + QR L+Q + + F +W+ E + + +
Sbjct: 95 DILDQERADLEKAWVQRRMMLDQCLE-LQLFHRDCEQAENWMAAREAFLNTED-KGDSLD 152
Query: 123 KIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALV 182
++ I++H+ K I ++ L A L+ G ++ + + DR+ L
Sbjct: 153 SVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAA-GHYAKGDISSRRNEVLDRWRRLK 211
Query: 183 EASD 186
Sbjct: 212 AQMI 215
Score = 72.3 bits (177), Expect = 2e-14
Identities = 33/265 (12%), Positives = 83/265 (31%), Gaps = 49/265 (18%)
Query: 76 ASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALH 135
+ ++F ++ W++ + EL D + + H
Sbjct: 2 GHHHHHHSHDSHD-LQRFLSDFRDLMSWINGIRGLVSSDEL-AKDVTGAEALLERHQEHR 59
Query: 136 KEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFLY 195
EI + F
Sbjct: 60 TEIDARAGTFQAFEQFG------------------------------------------- 76
Query: 196 NQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMAT 255
QL+ ++S +IK+KL+ L+ +++KA R L++ L L + F + +
Sbjct: 77 QQLLAHGHYAS-PEIKQKLDILDQERADLEKAWVQRRMMLDQCLEL-QLFHRDCEQAENW 134
Query: 256 LRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPD 315
+ + LN+++ +++ ++ I+ + ++ +A +L+ G
Sbjct: 135 MAAREAFLNTEDKGDSLD-SVEALIKKHEDFDKAINVQEEKIAALQAFADQLIA-AGHYA 192
Query: 316 KPEVKKHIEDLDSAWDNVTALFAKR 340
K ++ ++ W + A ++
Sbjct: 193 KGDISSRRNEVLDRWRRLKAQMIEK 217
Score = 70.7 bits (173), Expect = 6e-14
Identities = 36/258 (13%), Positives = 88/258 (34%), Gaps = 44/258 (17%)
Query: 230 DRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAE 289
++ L ++F S+ + +M+ + ++ ++S E + + +E + E
Sbjct: 4 HHHHHSHDSHDL-QRFLSDFRDLMSWINGIRGLVSSDELAK-DVTGAEALLERHQEHRTE 61
Query: 290 IDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAME 349
ID + GQ+L+ G PE+K+ ++ LD ++ + +R L +
Sbjct: 62 IDARAGTFQAFEQFGQQLLA-HGHYASPEIKQKLDILDQERADLEKAWVQRRMML----D 116
Query: 350 KAMEFHETLQRKGEQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAV 409
+ +E + ++ EN + A E + +
Sbjct: 117 QCLELQLFHRD-----------CEQAENWMAAREAFLNTED------------------- 146
Query: 410 QTFVNSLPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHW 469
+ + +HE F + + +E + A A +++ H I
Sbjct: 147 ------KGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGD-ISSR 199
Query: 470 ITIIQSRWEEVSSWAKQR 487
+ RW + + ++
Sbjct: 200 RNEVLDRWRRLKAQMIEK 217
Score = 69.9 bits (171), Expect = 1e-13
Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 5/145 (3%)
Query: 416 LPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQS 475
L +D A L H++ E+ + A Q++L H + IK + I+
Sbjct: 41 LAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAHGHYA-SPEIKQKLDILDQ 99
Query: 476 RWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVE 535
++ QR L L LQ E+ W+A E+ L + D + +VE
Sbjct: 100 ERADLEKAWVQRRMMLDQCL-ELQLFHRDCEQAENWMAAREAFLNTED---KGDSLDSVE 155
Query: 536 RLIEEHKEFMEATSKRQHEVDSVRA 560
LI++H++F +A + ++ ++ +++A
Sbjct: 156 ALIKKHEDFDKAINVQEEKIAALQA 180
Score = 40.3 bits (94), Expect = 0.001
Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 19/149 (12%)
Query: 484 AKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKE 543
+ LQ S +L+ W+ + ++ L D+ E L+E H+E
Sbjct: 2 GHHHHHHS-HDSHDLQRFLSDFRDLMSWINGIRGLV---SSDELAKDVTGAEALLERHQE 57
Query: 544 FMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWR 603
R + ++L + HY A P+ + + +L
Sbjct: 58 HRTEIDARAGTFQAFEQ--FGQQLLAH-GHY-----------ASPEIKQ-KLDILDQERA 102
Query: 604 NVWLLAWERQRRLQERLNYLIELEKVKNF 632
++ +R+ L + L + +
Sbjct: 103 DLEKAWVQRRMMLDQCLELQLFHRDCEQA 131
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 71.9 bits (176), Expect = 2e-14
Identities = 37/255 (14%), Positives = 83/255 (32%), Gaps = 48/255 (18%)
Query: 90 AKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELT 149
QF + W+ + + + + D +Q ++H L E+ +P +
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSED-YGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVL 60
Query: 150 DIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTD 209
D L + +
Sbjct: 61 DTGKKLSDDNTIGK--------------------------------------------EE 76
Query: 210 IKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPP 269
I+++L + W E+++ RG+ LEE+L ++F + ++ A + + + S++
Sbjct: 77 IQQRLAQFVDHWKELKQLAAARGQRLEESLEY-QQFVANVEEEEAWINEKMTLVASEDYG 135
Query: 270 AVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSA 329
AIQ + + + K V A+G+ L+K + ++ L
Sbjct: 136 D-TLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIK-KNNHHVENITAKMKGLKGK 193
Query: 330 WDNVTALFAKREENL 344
++ A+R+ L
Sbjct: 194 VSDLEKAAAQRKAKL 208
Score = 71.5 bits (175), Expect = 3e-14
Identities = 33/251 (13%), Positives = 90/251 (35%), Gaps = 43/251 (17%)
Query: 241 LAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQC 300
+ +F+ ++ + +++ + ++S++ + +Q + K ++AE+ +P ++
Sbjct: 1 MVHQFFRDMDDEESWIKEKKLLVSSEDYGR-DLTGVQNLRKKHKRLEAELAAHEPAIQSV 59
Query: 301 RASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHETLQR 360
+G+KL K E+++ + W + L A R + L ++E +F ++
Sbjct: 60 LDTGKKLSDD-NTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE-YQQFVANVEE 117
Query: 361 KGEQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSLPEDD 420
E + TL + D +
Sbjct: 118 ---------------------EEAWINEKMTLVASED------------------YGDTL 138
Query: 421 QEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEV 480
+ L +HE F + + + + ++ K++ I + ++ + ++
Sbjct: 139 AAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHH-VENITAKMKGLKGKVSDL 197
Query: 481 SSWAKQREERL 491
A QR+ +L
Sbjct: 198 EKAAAQRKAKL 208
Score = 69.6 bits (170), Expect = 2e-13
Identities = 33/203 (16%), Positives = 74/203 (36%), Gaps = 20/203 (9%)
Query: 416 LPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQS 475
D + +H++ ELA E + + +++ + I+ +
Sbjct: 28 YGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIG-KEEIQQRLAQFVD 86
Query: 476 RWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVE 535
W+E+ A R +RL Q + +EE W+ + + + + E D + ++
Sbjct: 87 HWKELKQLAAARGQRL-EESLEYQQFVANVEEEEAWINEKMTLVAS---EDYGDTLAAIQ 142
Query: 536 RLIEEHKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRC 595
L+++H+ F + + V+ V A + E L H+ +
Sbjct: 143 GLLKKHEAFETDFTVHKDRVNDVCA--NGEDLIKKNNHHVENI-------------TAKM 187
Query: 596 RLLWDTWRNVWLLAWERQRRLQE 618
+ L ++ A +R+ +L E
Sbjct: 188 KGLKGKVSDLEKAAAQRKAKLDE 210
Score = 68.8 bits (168), Expect = 2e-13
Identities = 35/238 (14%), Positives = 86/238 (36%), Gaps = 47/238 (19%)
Query: 3 ANQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQL 62
+ + D V+ ++ K L+ LA + ++ S+ G +++ + + + I+++L
Sbjct: 23 VSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGKEE-IQQRL 81
Query: 63 NELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEE 122
+ ++ + L + A+ R LE+++ +QF + W+++ + +
Sbjct: 82 AQFVDHWKELKQLAAARGQRLEESLE-YQQFVANVEEEEAWINEKMTLVASED-YGDTLA 139
Query: 123 KIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALV 182
IQ +++H+A + K ++ L
Sbjct: 140 AIQGLLKKHEAFETDFTVHKDRVNDVCANGEDL--------------------------- 172
Query: 183 EASDNLGQYAFLYNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALA 240
+ V +I K++ L G ++++KA R L+E A
Sbjct: 173 -----------------IKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENSA 213
Score = 43.0 bits (101), Expect = 2e-04
Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 18/126 (14%)
Query: 498 LQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEATSKRQHEVDS 557
+ +++ W+ + L + +E D+ V+ L ++HK + + + S
Sbjct: 2 VHQFFRDMDDEESWI---KEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQS 58
Query: 558 VRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWRNVWLLAWERQRRLQ 617
V + +KL+D+ R D W+ + LA R +RL+
Sbjct: 59 VLDT--GKKLSDDNTIGKEEI-------------QQRLAQFVDHWKELKQLAAARGQRLE 103
Query: 618 ERLNYL 623
E L Y
Sbjct: 104 ESLEYQ 109
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 69.9 bits (171), Expect = 6e-14
Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 5/144 (3%)
Query: 416 LPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQS 475
P D + H+ E+ + A + L + +L + H + I+ + + S
Sbjct: 32 RPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQA-SEEIREKLQQVMS 90
Query: 476 RWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVE 535
R +E++ + R ERLR L + WL E +L + + + +VE
Sbjct: 91 RRKEMNEKWEARWERLR-MLLEVCQFSRDASVAEAWLIAQEPYLASGD---FGHTVDSVE 146
Query: 536 RLIEEHKEFMEATSKRQHEVDSVR 559
+LI+ H+ F ++T+ ++
Sbjct: 147 KLIKRHEAFEKSTASWAERFAALE 170
Score = 65.7 bits (160), Expect = 2e-12
Identities = 28/156 (17%), Positives = 60/156 (38%), Gaps = 4/156 (2%)
Query: 1 MVANQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIER 60
+ Q+ P D V+ ++ + + + R + S+ ++G + A + I
Sbjct: 26 QIETQERPR-DVSSVELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQAS-EEIRE 83
Query: 61 QLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTD 120
+L ++M+R +NE R + L + V QF + WL E + +
Sbjct: 84 KLQQVMSRRKEMNEKWEARWERLRMLLEV-CQFSRDASVAEAWLIAQEPYLASGDF-GHT 141
Query: 121 EEKIQQRIREHDALHKEILRKKPDFTELTDIASSLM 156
+ +++ I+ H+A K F L + +
Sbjct: 142 VDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLEL 177
Score = 51.8 bits (124), Expect = 1e-07
Identities = 27/218 (12%), Positives = 62/218 (28%), Gaps = 42/218 (19%)
Query: 244 KFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRAS 303
+F+S + +++ + + + +QE P + +++ + I AEI+ C
Sbjct: 8 RFFSMARDLLSWMESIIRQIETQERPR-DVSSVELLMKYHQGINAEIETRSKNFSACLEL 66
Query: 304 GQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHETLQRKGE 363
G+ L++ E+++ ++ + S + + R E L +E + +
Sbjct: 67 GESLLQR-QHQASEEIREKLQQVMSRRKEMNEKWEARWERL----RMLLEVCQFSRD--- 118
Query: 364 QGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSLPEDDQEA 423
E + E + D
Sbjct: 119 ---------------ASVAEAWLIAQEPYLASGD------------------FGHTVDSV 145
Query: 424 RTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPD 461
+ HE F + A A L +
Sbjct: 146 EKLIKRHEAFEKSTASWAERFAALEKPTTLELKERQIA 183
Score = 49.1 bits (117), Expect = 8e-07
Identities = 26/218 (11%), Positives = 66/218 (30%), Gaps = 47/218 (21%)
Query: 92 QFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDI 151
+F +L W++ ++I+ E P D ++ ++ H ++ EI + +F+ ++
Sbjct: 8 RFFSMARDLLSWMESIIRQIETQER-PRDVSSVELLMKYHQGINAEIETRSKNFSACLEL 66
Query: 152 ASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTDIK 211
L+ +S +I+
Sbjct: 67 G-------------------------------------------ESLLQRQHQAS-EEIR 82
Query: 212 KKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAV 271
+KL+++ E+ + R L L + +F + A L + L S +
Sbjct: 83 EKLQQVMSRRKEMNEKWEARWERLRMLLEV-CQFSRDASVAEAWLIAQEPYLASGDFGHT 141
Query: 272 EPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMK 309
++++ + + +K
Sbjct: 142 VD-SVEKLIKRHEAFEKSTASWAERFAALEKPTTLELK 178
Score = 38.4 bits (89), Expect = 0.003
Identities = 20/126 (15%), Positives = 38/126 (30%), Gaps = 18/126 (14%)
Query: 498 LQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEATSKRQHEVDS 557
S+ +LL W+ + E + P D+ +VE L++ H+ R +
Sbjct: 6 KFRFFSMARDLLSWMESIIRQI---ETQERPRDVSSVELLMKYHQGINAEIETRSKNFSA 62
Query: 558 VRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWRNVWLLAWERQRRLQ 617
E L A + R + + + + + R RL+
Sbjct: 63 CLELG--ESLLQRQHQ------------ASEEIRE-KLQQVMSRRKEMNEKWEARWERLR 107
Query: 618 ERLNYL 623
L
Sbjct: 108 MLLEVC 113
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin,
ankyrin-binding domain, actin capping, AC binding,
cytoskeleton, disease mutation; 2.10A {Homo sapiens}
PDB: 3f57_A
Length = 218
Score = 70.4 bits (172), Expect = 8e-14
Identities = 33/187 (17%), Positives = 74/187 (39%), Gaps = 5/187 (2%)
Query: 2 VANQKPPSADYKVVKAQLQE-QKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIER 60
VA+ D+ V + + F ++ A Q + ++ + +A +E I
Sbjct: 23 VASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLI-DAGHSEAATIAE 81
Query: 61 QLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTD 120
+ L + +L E RM L + + ++ IL +D+ +++ + + D
Sbjct: 82 WKDGLNEMWADLLELIDTRMQLLAASYDL-HRYFYTGAEILGLIDEKHRELPED--VGLD 138
Query: 121 EEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGA 180
+ R H A +E+ + D+A+ L ++A + +K Q+ + + A
Sbjct: 139 ASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQA 198
Query: 181 LVEASDN 187
L++A
Sbjct: 199 LLDACAG 205
Score = 68.5 bits (167), Expect = 4e-13
Identities = 28/259 (10%), Positives = 76/259 (29%), Gaps = 47/259 (18%)
Query: 92 QFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDI 151
Q + + + W+ + E E + D + + + +E
Sbjct: 5 QLKRETDDLEQWISEKELVASSPE-MGQDFDHVTLLRDKFRDFARETG------------ 51
Query: 152 ASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTDIK 211
+R + + L + S I
Sbjct: 52 --------------------AIGQERVDNVNAFIERL-----------IDAGHSEAATIA 80
Query: 212 KKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAV 271
+ + LN +W ++ + + R + L + L +++ ++ + + L E +
Sbjct: 81 EWKDGLNEMWADLLELIDTRMQLLAASYDL-HRYFYTGAEILGLIDEKHRELP--EDVGL 137
Query: 272 EPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWD 331
+ + + E+ +V+Q + +L ++ +++ +AW
Sbjct: 138 DASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQ 197
Query: 332 NVTALFAKREENLIHAMEK 350
+ A R L+ +K
Sbjct: 198 ALLDACAGRRTQLVDTADK 216
Score = 68.1 bits (166), Expect = 5e-13
Identities = 31/257 (12%), Positives = 75/257 (29%), Gaps = 44/257 (17%)
Query: 244 KFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPE-VEQCRA 302
+ E + + + + +S E + + + ++ E E V+ A
Sbjct: 5 QLKRETDDLEQWISEKELVASSPEMGQ-DFDHVTLLRDKFRDFARETGAIGQERVDNVNA 63
Query: 303 SGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHETLQRKG 362
++L+ G + + + + L+ W ++ L R + L + + F+
Sbjct: 64 FIERLID-AGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYT------ 116
Query: 363 EQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSLPEDDQE 422
LI + + + D
Sbjct: 117 ---------GAEILGLIDEKHRELP--------------------------EDVGLDAST 141
Query: 423 ARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVSS 482
A + H F REL ++ +A R+ + A I++ + + W+ +
Sbjct: 142 AESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLD 201
Query: 483 WAKQREERLRNHLRSLQ 499
R +L + +
Sbjct: 202 ACAGRRTQLVDTADKFR 218
Score = 65.0 bits (158), Expect = 6e-12
Identities = 28/208 (13%), Positives = 57/208 (27%), Gaps = 19/208 (9%)
Query: 416 LPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQS 475
+ +D + F RE E+ + L+ + A I W +
Sbjct: 29 MGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNE 88
Query: 476 RWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVE 535
W ++ R + L L E+L + + L E + D T E
Sbjct: 89 MWADLLELIDTRMQLLA-ASYDLHRYFYTGAEILGLIDEKHREL----PEDVGLDASTAE 143
Query: 536 RLIEEHKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRC 595
H F +V + +L G + + +
Sbjct: 144 SFHRVHTAFERELHLLGVQVQQFQD--VATRLQTAYA------------GEKAEAIQNKE 189
Query: 596 RLLWDTWRNVWLLAWERQRRLQERLNYL 623
+ + W+ + R+ +L + +
Sbjct: 190 QEVSAAWQALLDACAGRRTQLVDTADKF 217
Score = 40.8 bits (95), Expect = 7e-04
Identities = 8/77 (10%), Positives = 24/77 (31%)
Query: 11 DYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQLNELMNRFD 70
D ++ + ++ L + + + + +AI+ + E+ +
Sbjct: 138 DASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQ 197
Query: 71 NLNEGASQRMDALEQAM 87
L + + R L
Sbjct: 198 ALLDACAGRRTQLVDTA 214
Score = 37.7 bits (87), Expect = 0.009
Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 19/137 (13%)
Query: 497 SLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFM-EATSKRQHEV 555
SL L ++L +W+++ E + + D V L ++ ++F E + Q V
Sbjct: 2 SLFQLKRETDDLEQWISEKELVA---SSPEMGQDFDHVTLLRDKFRDFARETGAIGQERV 58
Query: 556 DSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWRNVWLLAWERQRR 615
D+V + L G ++ L + W ++ L R +
Sbjct: 59 DNV------NAFIERLIDAGHSEAATIAE---------WKDGLNEMWADLLELIDTRMQL 103
Query: 616 LQERLNYLIELEKVKNF 632
L +
Sbjct: 104 LAASYDLHRYFYTGAEI 120
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 70.5 bits (172), Expect = 2e-13
Identities = 21/143 (14%), Positives = 53/143 (37%), Gaps = 2/143 (1%)
Query: 417 PEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSR 476
+ + + + +REL KE + R+L + HP ++ + +Q++
Sbjct: 37 SDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHP-ARPTVESFQAALQTQ 95
Query: 477 WEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVER 536
W + E L+ + Q + E L K + L + + +E
Sbjct: 96 WSWMLQLCCCIEAHLKENAAYFQFFSDV-REAEGQLQKLQEALRRKYSCDRSATVTRLED 154
Query: 537 LIEEHKEFMEATSKRQHEVDSVR 559
L+++ ++ E ++ + + +
Sbjct: 155 LLQDAQDEKEQLNEYKGHLSGLA 177
Score = 62.4 bits (151), Expect = 1e-10
Identities = 23/170 (13%), Positives = 59/170 (34%), Gaps = 4/170 (2%)
Query: 5 QKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQLNE 64
S + A+ + L + L ++ + L G+ + PA R +E
Sbjct: 33 GFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPA-RPTVESFQAA 91
Query: 65 LMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIP--TDEE 122
L ++ + + L++ A QF + L K ++ ++
Sbjct: 92 LQTQWSWMLQLCCCIEAHLKENAA-YFQFFSDVREAEGQLQKLQEALRRKYSCDRSATVT 150
Query: 123 KIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQ 172
+++ +++ +++ K + L A +++ L A + +L
Sbjct: 151 RLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVVQLKPRHPAHPMRGRLP 200
Score = 50.1 bits (119), Expect = 1e-06
Identities = 18/169 (10%), Positives = 62/169 (36%), Gaps = 9/169 (5%)
Query: 232 GRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEID 291
G + +L F + + L + ++ + + ++ + + E++
Sbjct: 1 GSHMRSLESLHS-FVAAATKELMWLNEKEEEEVGFDWSD-RNTNMTAKKESYSALMRELE 58
Query: 292 QTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKA 351
+ ++++ + +G +L++ P +P V+ L + W + L E +L
Sbjct: 59 LKEKKIKELQNAGDRLLRE-DHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAA-Y 116
Query: 352 MEFHETLQR-----KGEQGTITALFAKREENLIHAMEKAMEFHETLQQN 395
+F ++ + Q + ++ + +E ++ + ++
Sbjct: 117 FQFFSDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQ 165
Score = 48.5 bits (115), Expect = 3e-06
Identities = 30/249 (12%), Positives = 75/249 (30%), Gaps = 52/249 (20%)
Query: 78 QRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKE 137
M +LE F T L WL++ E++ + + + + AL +E
Sbjct: 2 SHMRSLESL----HSFVAAATKELMWLNEKEEEEVGFD-WSDRNTNMTAKKESYSALMRE 56
Query: 138 ILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFLYNQ 197
+ K+ EL + L+ A
Sbjct: 57 LELKEKKIKELQNAGDRLL------------------------------REDHPA----- 81
Query: 198 LILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLR 257
++ L W+ + + L+E A +F+S+++ L+
Sbjct: 82 ---------RPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAY-FQFFSDVREAEGQLQ 131
Query: 258 DLQDNLNSQEPPAVE--PKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPD 315
LQ+ L + ++ ++ K ++++ K + + ++++
Sbjct: 132 KLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVVQLKPRHP 191
Query: 316 KPEVKKHIE 324
++ +
Sbjct: 192 AHPMRGRLP 200
Score = 37.0 bits (85), Expect = 0.016
Identities = 29/198 (14%), Positives = 62/198 (31%), Gaps = 25/198 (12%)
Query: 489 ERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEAT 548
+R L SL + + L WL + E + + D + E + M
Sbjct: 2 SHMR-SLESLHSFVAAATKELMWLNEKEEEEVGFD---WSDRNTNMTAKKESYSALMREL 57
Query: 549 SKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWRNVWLL 608
++ ++ ++ + ++L A P + L W + L
Sbjct: 58 ELKEKKIKELQN--AGDRLLREDHP------------ARPTVES-FQAALQTQWSWMLQL 102
Query: 609 AWERQRRLQERLNYLIELEKVKNF-SW-----DDWRKRFLRFMNHKKSRLTDLFRKMDKN 662
+ L+E Y V+ + R+++ + +RL DL +
Sbjct: 103 CCCIEAHLKENAAYFQFFSDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDE 162
Query: 663 NDGLIPREDFVDGIIKTK 680
+ L + + G+ K
Sbjct: 163 KEQLNEYKGHLSGLAKRA 180
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.7 bits (167), Expect = 5e-12
Identities = 83/626 (13%), Positives = 181/626 (28%), Gaps = 204/626 (32%)
Query: 130 EHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQD--TADRYGALVEASDN 187
EH +K+IL F + V + V D + + + ++ + D
Sbjct: 13 EHQYQYKDIL---SVFED---------AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 188 LGQYAFLYNQLILSPRFSSVTDIKKKLERLN--GLWNEVQKATNDRGRSLEEALALAEKF 245
+ L+ L+ V +++ R+N L + ++ + ++
Sbjct: 61 VSGTLRLFWTLLSKQE-EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 246 WSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQ 305
+++ Q + N++ +P + + AL E++ + ++ G
Sbjct: 120 YNDNQVFA------KYNVSRLQP-------YLKLRQALLELRPAKNVL---ID-----G- 157
Query: 306 KLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHETLQRKGEQG 365
+ G K AL + M+ + F L
Sbjct: 158 --VLGSG--------KT----------WVALDVCLSYKVQCKMDFKI-FWLNL---KNCN 193
Query: 366 TITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSLPEDDQEART 425
+ + +E + L + D N S + +
Sbjct: 194 SPETV---------------LEMLQKL------LYQIDPN-------WTSRSDHSSNIKL 225
Query: 426 QLAEHEKFLRELAEKEIEKDATIGLAQRIL--VKSHPDGATVIKHWI----TIIQSRWEE 479
++ + LR L + + ++ + +L V++ A + ++ +R+++
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLL-----VLLNVQN----AKAWNAFNLSCKILLTTRFKQ 276
Query: 480 VS---SWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVER 536
V+ S A L +H +L +E+ L K L+ + LP
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTP-----DEVKSLLLKY----LDCRPQDLP-------- 319
Query: 537 LIEEHKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCR 596
EV + +P R + R+
Sbjct: 320 ----------------REVLTT--NPRRLSI----------------IAES--IRDGLAT 343
Query: 597 LLWDTWRNVWLLAWERQRRLQERLNYLIELEKVKNFSWDDWRKRFLRFMNHKKSRLTDLF 656
WD W++V ++L +IE + ++RK F R +F
Sbjct: 344 --WDNWKHV----------NCDKLTTIIES-SLNVLEPAEYRKMFDRLS---------VF 381
Query: 657 RKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLI--DWKEFIAALR 714
IP + +I S + + + + L+ KE ++
Sbjct: 382 PP-----SAHIPTI--LLSLIWFDVIKSDVM-----VVVNKLHKYSLVEKQPKESTISI- 428
Query: 715 PD--WEEKKPNTESEKIHDEVKRLVQ 738
P E K +H + +V
Sbjct: 429 PSIYLELKVKLENEYALH---RSIVD 451
Score = 68.7 bits (167), Expect = 5e-12
Identities = 80/581 (13%), Positives = 173/581 (29%), Gaps = 186/581 (32%)
Query: 101 LDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALH-----KEILRKKPDFTELTDIASSL 155
+D+ + E + + +++ E+ + D K IL K+ E+ I
Sbjct: 7 MDF-ETGEHQYQYKDILSVFEDAF---VDNFDCKDVQDMPKSILSKE----EIDHI---- 54
Query: 156 MGLVGEDEAAGVADKLQDTADRYGA-----LVEASDNLGQYAFLYNQLILSPRFSSVTDI 210
+ +A +L T VE + Y FL + + R S+
Sbjct: 55 ---IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI-NYKFLMSPIKTEQRQPSM-MT 109
Query: 211 KKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQ---------------SVMA- 254
+ +E+ + L+N+ Q L+ L L + EL+ + +A
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LELRPAKNVLIDGVLGSGKTWVAL 168
Query: 255 -TLRD--LQD---------NLNSQEPPAVEPKAIQQQQYAL-KEIKAEIDQTKPEVEQCR 301
+Q NL + P + +Q+ Y + + D + +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 302 ASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTA---------LFAKREENLIHAMEKAM 352
+ +L ++ + L + + L R + + + A
Sbjct: 229 SIQAELRRLLKSKPYENC---LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 353 EFHETLQRKGEQGTIT-----ALFAK----------REENLIHAMEKAMEFHETLQQNR- 396
H +L T+T +L K RE + ++ E+++
Sbjct: 286 TTHISL--DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLA 342
Query: 397 --DDCKKADCNA--DAVQTFVNSL-PEDDQEARTQLA----------------------- 428
D+ K +C+ +++ +N L P + ++ +L+
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 429 EHEKFLRELAEKE-IEKDA---TIGLAQRIL-VKSHPDGATVIKHWITIIQSR------- 476
+ + +L + +EK TI + L +K + + H +I+
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-H-RSIVDHYNIPKTFD 460
Query: 477 -WEEVSSW--------------AKQREER-------------LRNHLRS----------- 497
+ + + + ER L +R
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 498 ---LQDL--------------DSLLEELLEWLAKCESHLLN 521
LQ L + L+ +L++L K E +L+
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Score = 52.2 bits (124), Expect = 6e-07
Identities = 70/505 (13%), Positives = 131/505 (25%), Gaps = 170/505 (33%)
Query: 380 HAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSLPEDDQEARTQLAEHEKFLRELAE 439
H M+F ET + D + F + F+
Sbjct: 1 HHHHHHMDF-ETGEHQY-------QYKDILSVFE-----------------DAFVDNFDC 35
Query: 440 KEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERLRNHLRSLQ 499
K+++ D + IL K I H II S K +L
Sbjct: 36 KDVQ-DMP----KSILSK------EEIDH---IIMS---------KDAVSGTLRLFWTLL 72
Query: 500 D-----LDSLLEELLE----WLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEATSK 550
+ +EE+L +L + I +RL +++ F +
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 551 RQHEVDSVRASPSREKLNDNLPHYGPRFPPKGS----------KGAEPQFRNPRCRLLWD 600
R +R + + N+ G GS + Q + ++ W
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGV----LGSGKTWVALDVCLSYKVQCKMD-FKIFWL 187
Query: 601 TWRNV----WLLAWERQRRLQERL--NYLIELEKVKNF-----SWDDWRKRFLRFMNHKK 649
+N +L E ++L ++ N+ + N S +R L+ ++
Sbjct: 188 NLKNCNSPETVL--EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 650 S--------------------------RLTDLFRKMDKNNDGLIPREDFVDGIIKTKFET 683
R + + I + + T E
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL--TPDEV 303
Query: 684 SKLEMGAVADMFDHD-------YNPGLIDWKEFIAALRPD----WEE-KKPNTESEKIHD 731
L + D D NP + IA D W+ K N D
Sbjct: 304 KSL-LLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLATWDNWKHVN------CD 353
Query: 732 EVKRLVQLC-------TCRQKFRVFQVGEGKYRFGDSQKLRLVRILRSTVMVRVGGGWVA 784
++ +++ R+ F V F S I + ++ + W
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSV------FPPS-----AHI-PTILLSLI---WFD 398
Query: 785 LDEF-------------LIKNDPCR 796
+ + L++ P
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKE 423
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 66.3 bits (161), Expect = 1e-11
Identities = 32/317 (10%), Positives = 99/317 (31%), Gaps = 59/317 (18%)
Query: 243 EKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRA 302
E + +R + ++ + +++Q + + I I + ++++ +A
Sbjct: 5 EFTKHVTSECLGWMRQQRAEMDMVAWGV-DLASVEQHINSHRGIHNSIGDYRWQLDKIKA 63
Query: 303 SGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHETLQRKG 362
++ K I L+ ++N+ +R ++L + + R
Sbjct: 64 DLRE-------------KSAIYQLEEEYENLLKASFERMDHL----RQLQNIIQATSR-- 104
Query: 363 EQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSLPEDDQE 422
+ E + D + +
Sbjct: 105 -------------------EIMWINDCEEEELLYD------------------WSDKNTN 127
Query: 423 ARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVSS 482
+ + +L KE E + + ++++ HP + I+ ++ +Q++W +
Sbjct: 128 IAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPA-SDKIEAYMDTLQTQWSWILQ 186
Query: 483 WAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHK 542
K + L+ + Q + + +L + + + + I+E +
Sbjct: 187 ITKCIDVHLKENAAYFQFFEEA-QSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELE 245
Query: 543 EFMEATSKRQHEVDSVR 559
+ E + + +V ++
Sbjct: 246 KEREKILEYKRQVQNLV 262
Score = 55.5 bits (133), Expect = 4e-08
Identities = 44/316 (13%), Positives = 103/316 (32%), Gaps = 65/316 (20%)
Query: 11 DYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQLNELMNRFD 70
D V+ + + + + D + + + E + + +L ++
Sbjct: 33 DLASVEQHINSHRGIHNSIGDYRWQLDKIKADLRE-------------KSAIYQLEEEYE 79
Query: 71 NLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIRE 130
NL + + +RMD L Q + + + W++ E++ + I Q+
Sbjct: 80 NLLKASFERMDHLRQ----LQNIIQATSREIMWINDCEEEELLYD-WSDKNTNIAQKQEA 134
Query: 131 HDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQ 190
++ K+ + +L + L+
Sbjct: 135 FSIRMSQLEVKEKELNKLKQESDQLVLNQHPASD-------------------------- 168
Query: 191 YAFLYNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQ 250
I+ ++ L W+ + + T L+E A +F+ E Q
Sbjct: 169 ------------------KIEAYMDTLQTQWSWILQITKCIDVHLKENAAY-FQFFEEAQ 209
Query: 251 SVMATLRDLQDNLNSQEPPAVEPK--AIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLM 308
S A L+ LQD++ + P + +Q L++ + +I + K +V+ +K++
Sbjct: 210 STEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIV 269
Query: 309 KICGEPDKPEVKKHIE 324
++ K I
Sbjct: 270 QLKPRNPDYRSNKPII 285
Score = 48.9 bits (116), Expect = 4e-06
Identities = 53/465 (11%), Positives = 140/465 (30%), Gaps = 76/465 (16%)
Query: 100 ILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLV 159
L W+ + ++ + D ++Q I H +H I + ++
Sbjct: 14 CLGWMRQQRAEMDMVAW-GVDLASVEQHINSHRGIHNSIGDYRWQLDKIKA--------- 63
Query: 160 GEDEAAGVADKLQDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTDIKKKLERLNG 219
+ + Y L++AS ++++ L
Sbjct: 64 ----DLREKSAIYQLEEEYENLLKAS-------------------------FERMDHLRQ 94
Query: 220 LWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQ 279
L N +Q + E W L D D + I Q+
Sbjct: 95 LQNIIQATSR-------------EIMWINDCEEEELLYDWSDKNTN----------IAQK 131
Query: 280 QYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAK 339
Q A ++++ + E+ + + +L+ P +++ +++ L + W + +
Sbjct: 132 QEAFSIRMSQLEVKEKELNKLKQESDQLVL-NQHPASDKIEAYMDTLQTQWSWILQITKC 190
Query: 340 REENLIHAMEKAMEFHETLQRKGE--QGTITALFAKREENLIHAMEKAMEFHETLQQNRD 397
+ +L +F E Q +G ++ K + ++ +E + L++ R+
Sbjct: 191 IDVHLKEN-AAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKERE 249
Query: 398 DCKKADCNADAVQTFVNSLPEDDQEARTQLAEHEKFLRELAE-KEIEKDATIGLAQRILV 456
+ + + + + LR L + K+ +K G +
Sbjct: 250 KILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKPIILRALCDYKQDQKIVHKGDECILKD 309
Query: 457 KSHPDGATVIKH-----WITIIQSRWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEW 511
+ V + + + A ++ + ++ L + L ++
Sbjct: 310 NNERSKWYVTGPGGVDMLVPSVGLIIPPPNPLAVDLSCKIEQYYEAILALWNQLYINMK- 368
Query: 512 LAKCESHLLNLEAEPLPDDIPTVERLI--EEHKEFMEATSKRQHE 554
+ H ++ E + + + E++ + + E
Sbjct: 369 -SLVSWHYCMIDIEKIRAMTIAKLKTMRQEDYMKTIADLELHYQE 412
Score = 46.2 bits (109), Expect = 3e-05
Identities = 31/271 (11%), Positives = 79/271 (29%), Gaps = 45/271 (16%)
Query: 416 LPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQS 475
D + H + + + D + ++
Sbjct: 30 WGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKADLREKSAIYQ-------------LEE 76
Query: 476 RWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVE 535
+E + + +R +HLR LQ++ + W+ CE L + D +
Sbjct: 77 EYENLLKASFER----MDHLRQLQNIIQATSREIMWINDCEEEELLYD---WSDKNTNIA 129
Query: 536 RLIEEHKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRC 595
+ E M ++ E++ ++ ++L N +
Sbjct: 130 QKQEAFSIRMSQLEVKEKELNKLKQES--DQLVLNQHPASDKI-------------EAYM 174
Query: 596 RLLWDTWRNVWLLAWERQRRLQERLNYLIELEKVKNFSWDDWRKRFLRFMNHKKS----- 650
L W + + L+E Y E+ ++ + + K + K
Sbjct: 175 DTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQST--EAYLKGLQDSIRKKYPCDKNM 232
Query: 651 ---RLTDLFRKMDKNNDGLIPREDFVDGIIK 678
L + ++++K + ++ + V ++
Sbjct: 233 PLQHLLEQIKELEKEREKILEYKRQVQNLVN 263
Score = 37.0 bits (85), Expect = 0.025
Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 30/129 (23%)
Query: 504 LLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEATSKRQHEVDSVRASPS 563
+ E L W+ + + + + D+ +VE+ I H+ + + ++D ++A
Sbjct: 10 VTSECLGWMRQQRAEM---DMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKADLR 66
Query: 564 REKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWRNVWLLAWERQRRLQERLNYL 623
+ L + + N+ ++ER L++ N +
Sbjct: 67 EKS---------------------------AIYQLEEEYENLLKASFERMDHLRQLQNII 99
Query: 624 IELEKVKNF 632
+ +
Sbjct: 100 QATSREIMW 108
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle,
spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Length = 224
Score = 62.7 bits (152), Expect = 4e-11
Identities = 35/263 (13%), Positives = 90/263 (34%), Gaps = 49/263 (18%)
Query: 230 DRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAE 289
+ L++ L E +Q ++ + ++Q L+ E + +++ K +
Sbjct: 10 LKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWG-SDLPSVESHLENHKNVHRA 68
Query: 290 IDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAME 349
I++ + +++ + S ++ P K + L+S + + +E +L
Sbjct: 69 IEEFESSLKEAKISEIQM----TAPLKLSYTDKLHRLESQYAKLLNTSRNQERHLDTLHN 124
Query: 350 KAMEFHETLQRKGEQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAV 409
L + E + D
Sbjct: 125 FVTRATNELI-------------------------WLNEKEESEVAYD------------ 147
Query: 410 QTFVNSLPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHW 469
E + + + H + +REL +KE A +A+++L+++HP I+ +
Sbjct: 148 ------WSERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLLENHP-ARLTIEAY 200
Query: 470 ITIIQSRWEEVSSWAKQREERLR 492
+Q++W + + E+ ++
Sbjct: 201 RAAMQTQWSWILQLCQCVEQHIQ 223
Score = 62.3 bits (151), Expect = 5e-11
Identities = 28/267 (10%), Positives = 87/267 (32%), Gaps = 54/267 (20%)
Query: 78 QRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKE 137
+ L+Q + + + +L+W+D+ + ++ E +D ++ + H +H+
Sbjct: 10 LKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEW-GSDLPSVESHLENHKNVHRA 68
Query: 138 ILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFLYNQ 197
I + E +
Sbjct: 69 IEEFESSLKEAKISEIQMTA---------------------------------------- 88
Query: 198 LILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLR 257
KL RL + ++ + ++ R L+ F + + + L
Sbjct: 89 -------PLKLSYTDKLHRLESQYAKLLNTSRNQERHLDTLH----NFVTRATNELIWLN 137
Query: 258 DLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKP 317
+ +++ + + +++ Y E+ E++Q + ++ + ++L+ P +
Sbjct: 138 EKEESEVAYDWSERNSSVARKKSY-HAELMRELEQKEESIKAVQEIAEQLLL-ENHPARL 195
Query: 318 EVKKHIEDLDSAWDNVTALFAKREENL 344
++ + + + W + L E+++
Sbjct: 196 TIEAYRAAMQTQWSWILQLCQCVEQHI 222
Score = 57.3 bits (138), Expect = 2e-09
Identities = 24/180 (13%), Positives = 65/180 (36%), Gaps = 10/180 (5%)
Query: 11 DYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQLNELMNRFD 70
D V++ L+ K + + + + + S+ + + +L+ L +++
Sbjct: 51 DLPSVESHLENHKNVHRAIEEFESSLKEA----KISEIQMTAPLKLSYTDKLHRLESQYA 106
Query: 71 NLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIRE 130
L + + L+ F + T L WL++ E+ + + ++
Sbjct: 107 KLLNTSRNQERHLDTLH----NFVTRATNELIWLNEKEESEVAYD-WSERNSSVARKKSY 161
Query: 131 HDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQ 190
H L +E+ +K+ + +IA L+ L + ++ +++ + Q
Sbjct: 162 HAELMRELEQKEESIKAVQEIAEQLL-LENHPARLTIEAYRAAMQTQWSWILQLCQCVEQ 220
Score = 54.2 bits (130), Expect = 2e-08
Identities = 27/203 (13%), Positives = 67/203 (33%), Gaps = 26/203 (12%)
Query: 416 LPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQS 475
D + L H+ R + E E +++ A+ ++ + ++S
Sbjct: 48 WGSDLPSVESHLENHKNVHRAIEEFE----SSLKEAKISEIQMTAPLKLSYTDKLHRLES 103
Query: 476 RWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVE 535
++ ++ + ++ + HL +L + + L WL + E + + + +V
Sbjct: 104 QYAKLLNTSRNQ----ERHLDTLHNFVTRATNELIWLNEKEESEVAYD---WSERNSSVA 156
Query: 536 RLIEEHKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRC 595
R H E M +++ + +V+ E+L
Sbjct: 157 RKKSYHAELMRELEQKEESIKAVQEIA--EQLLLENHPARLTI-------------EAYR 201
Query: 596 RLLWDTWRNVWLLAWERQRRLQE 618
+ W + L ++ +QE
Sbjct: 202 AAMQTQWSWILQLCQCVEQHIQE 224
Score = 43.0 bits (101), Expect = 2e-04
Identities = 19/143 (13%), Positives = 45/143 (31%), Gaps = 21/143 (14%)
Query: 486 QREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFM 545
+ L +L + +++LL W+ + + L+ D+P+VE +E HK
Sbjct: 10 LKSSLLDQNLTEEEVNMKFVQDLLNWV---DEMQVQLDRTEWGSDLPSVESHLENHKNVH 66
Query: 546 EATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWRNV 605
A + + + + S + + L + +
Sbjct: 67 RAIEEFESSLKEAKISEIQ------------------MTAPLKLSYTDKLHRLESQYAKL 108
Query: 606 WLLAWERQRRLQERLNYLIELEK 628
+ ++R L N++
Sbjct: 109 LNTSRNQERHLDTLHNFVTRATN 131
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 61.1 bits (148), Expect = 1e-10
Identities = 28/204 (13%), Positives = 60/204 (29%), Gaps = 26/204 (12%)
Query: 415 SLPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQ 474
D QL H + + E A I A+ + P + + +
Sbjct: 32 EWGVDLPSVEAQLGSHRGLHQSIEEFR----AKIERARSDEGQLSPATRGAYRDCLGRLD 87
Query: 475 SRWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTV 534
++ ++ + +K R L SL + + L WL + E + + D +
Sbjct: 88 LQYAKLLNSSKAR----LRSLESLHSFVAAATKELMWLNEKEEEEVGFD---WSDRNTNM 140
Query: 535 ERLIEEHKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPR 594
E + M ++ ++ ++ + L ++ H
Sbjct: 141 TAKKESYSALMRELELKEKKIKELQNA-GDRLLRED--HPA------------RPTVESF 185
Query: 595 CRLLWDTWRNVWLLAWERQRRLQE 618
L W + L + L+E
Sbjct: 186 QAALQTQWSWMLQLCCCIEAHLKE 209
Score = 60.0 bits (145), Expect = 2e-10
Identities = 32/256 (12%), Positives = 80/256 (31%), Gaps = 49/256 (19%)
Query: 237 EALALAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPE 296
+ L + LQ ++A + + Q ++ E + +++ Q + + + I++ + +
Sbjct: 2 SHMELEDSTLRYLQDLLAWVEENQHRVDGAEWGV-DLPSVEAQLGSHRGLHQSIEEFRAK 60
Query: 297 VEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHE 356
+E+ R+ +L + + + LD + + R +L +
Sbjct: 61 IERARSDEGQL----SPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHSFVAAATK 116
Query: 357 TLQRKGEQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSL 416
L E+ E + D
Sbjct: 117 ELMWLNEK-------------------------EEEEVGFD------------------W 133
Query: 417 PEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSR 476
+ + + + +REL KE + R+L + HP ++ + +Q++
Sbjct: 134 SDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPA-RPTVESFQAALQTQ 192
Query: 477 WEEVSSWAKQREERLR 492
W + E L+
Sbjct: 193 WSWMLQLCCCIEAHLK 208
Score = 60.0 bits (145), Expect = 3e-10
Identities = 30/187 (16%), Positives = 65/187 (34%), Gaps = 10/187 (5%)
Query: 4 NQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQLN 63
+ D V+AQL + L + + + + + +++ PA R A L
Sbjct: 29 DGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLS----PATRGAYRDCLG 84
Query: 64 ELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEK 123
L ++ L + R+ +LE F T L WL++ E++ +
Sbjct: 85 RLDLQYAKLLNSSKARLRSLESLH----SFVAAATKELMWLNEKEEEEVGFD-WSDRNTN 139
Query: 124 IQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVE 183
+ + + AL +E+ K+ EL + L+ V ++ +++
Sbjct: 140 MTAKKESYSALMRELELKEKKIKELQNAGDRLL-REDHPARPTVESFQAALQTQWSWMLQ 198
Query: 184 ASDNLGQ 190
+
Sbjct: 199 LCCCIEA 205
Score = 59.2 bits (143), Expect = 4e-10
Identities = 30/245 (12%), Positives = 81/245 (33%), Gaps = 54/245 (22%)
Query: 100 ILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLV 159
+L W+++++ ++ E D ++ ++ H LH+ I + L
Sbjct: 17 LLAWVEENQHRVDGAEW-GVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSP-- 73
Query: 160 GEDEAAGVADKLQDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTDIKKKLERLNG 219
++ + L RL+
Sbjct: 74 ---------------------------------------------ATRGAYRDCLGRLDL 88
Query: 220 LWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQ 279
+ ++ ++ R RSLE F + + L + ++ + + +
Sbjct: 89 QYAKLLNSSKARLRSLESL----HSFVAAATKELMWLNEKEEEEVGFDWSD-RNTNMTAK 143
Query: 280 QYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAK 339
+ + + E++ + ++++ + +G +L++ P +P V+ L + W + L
Sbjct: 144 KESYSALMRELELKEKKIKELQNAGDRLLR-EDHPARPTVESFQAALQTQWSWMLQLCCC 202
Query: 340 REENL 344
E +L
Sbjct: 203 IEAHL 207
Score = 42.3 bits (99), Expect = 2e-04
Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 28/144 (19%)
Query: 486 QREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFM 545
E + LR LQDL + +EE + + D+P+VE + H+
Sbjct: 2 SHMELEDSTLRYLQDLLAWVEENQHRV----------DGAEWGVDLPSVEAQLGSHRGLH 51
Query: 546 EATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWRNV 605
++ + + +++ R+ + A L + +
Sbjct: 52 QSIEEFRAKIERARSDEGQ------------------LSPATRGAYRDCLGRLDLQYAKL 93
Query: 606 WLLAWERQRRLQERLNYLIELEKV 629
+ R R L+ +++ K
Sbjct: 94 LNSSKARLRSLESLHSFVAAATKE 117
Score = 36.5 bits (84), Expect = 0.020
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 3 ANQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQL 62
S + A+ + L + L ++ + L G+ + PA R +E
Sbjct: 128 EVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPA-RPTVESFQ 186
Query: 63 NELMNRFDNLNEGASQRMDALEQ 85
L ++ + + L++
Sbjct: 187 AALQTQWSWMLQLCCCIEAHLKE 209
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix
bundle, alpha helix repeat, helical linker, actin
capping; 2.80A {Homo sapiens} PDB: 1owa_A
Length = 161
Score = 59.6 bits (144), Expect = 1e-10
Identities = 23/136 (16%), Positives = 58/136 (42%), Gaps = 4/136 (2%)
Query: 209 DIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEP 268
+I+++ + + + ++ +RG+ LE++ L + F + + + + +
Sbjct: 26 EIQERRQEVLTRYQSFKERVAERGQKLEDSYHL-QVFKRDADDLGKWIME--KVNILTDK 82
Query: 269 PAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDS 328
+P IQ + + ++AE+ + + + ++ G E K HIE+L
Sbjct: 83 SYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFT-MGHSAHEETKAHIEELRH 141
Query: 329 AWDNVTALFAKREENL 344
WD + L ++ + L
Sbjct: 142 LWDLLLELTLEKGDQL 157
Score = 53.4 bits (128), Expect = 2e-08
Identities = 33/209 (15%), Positives = 67/209 (32%), Gaps = 52/209 (24%)
Query: 31 DRQHSMSSLFQMGNEVAANADPAERKAIERQLNELMNRFDNLNEGASQRMDALEQAMAVA 90
++ + + G +V A+ I+ + E++ R+ + E ++R LE +
Sbjct: 5 EQFPKETVVESSGPKVLETAE-----EIQERRQEVLTRYQSFKERVAERGQKLEDSYH-L 58
Query: 91 KQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTD 150
+ F+ + W+ EK + D IQ + ++H +L E+ K +EL
Sbjct: 59 QVFKRDADDLGKWIM--EKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEK 116
Query: 151 IASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTDI 210
+ +
Sbjct: 117 TREERFTMGHSAHE--------------------------------------------ET 132
Query: 211 KKKLERLNGLWNEVQKATNDRGRSLEEAL 239
K +E L LW+ + + T ++G L AL
Sbjct: 133 KAHIEELRHLWDLLLELTLEKGDQLLRAL 161
Score = 46.5 bits (110), Expect = 5e-06
Identities = 22/179 (12%), Positives = 56/179 (31%), Gaps = 21/179 (11%)
Query: 442 IEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERLRNHLRSLQDL 501
+E+ + + K A I+ + +R++ +R ++L + LQ
Sbjct: 4 MEQFPKETVVESSGPKVLET-AEEIQERRQEVLTRYQSFKERVAERGQKLEDSYH-LQVF 61
Query: 502 DSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEATSKRQHEVDSVRAS 561
++L +W+ +N+ + +D ++ ++H+ + + +
Sbjct: 62 KRDADDLGKWI----MEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEK- 116
Query: 562 PSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWRNVWLLAWERQRRLQERL 620
+RE+ L W + L E+ +L L
Sbjct: 117 -TREERFTMGHSAHEET-------------KAHIEELRHLWDLLLELTLEKGDQLLRAL 161
Score = 41.1 bits (96), Expect = 4e-04
Identities = 16/132 (12%), Positives = 38/132 (28%), Gaps = 4/132 (3%)
Query: 364 QGTITALFAKREENLIHAME--KAMEFHETLQQNRDDCKKADC-NADAVQTFVNSLPEDD 420
Q + + + E + +E LQ + D + V + ED
Sbjct: 28 QERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKSYEDP 87
Query: 421 QEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEV 480
+ + +H+ E+ K + K I ++ W+ +
Sbjct: 88 TNIQGKYQKHQSLEAEVQTKSRLMSELEKTREE-RFTMGHSAHEETKAHIEELRHLWDLL 146
Query: 481 SSWAKQREERLR 492
++ ++L
Sbjct: 147 LELTLEKGDQLL 158
Score = 38.0 bits (88), Expect = 0.004
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 1 MVANQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIER 60
+ D ++ + Q+ + L+ + + MS L + E + + +
Sbjct: 76 VNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERF-TMGHSAHEETKA 134
Query: 61 QLNELMNRFDNLNEGASQRMDALEQAM 87
+ EL + +D L E ++ D L +A+
Sbjct: 135 HIEELRHLWDLLLELTLEKGDQLLRAL 161
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 8e-10
Identities = 77/500 (15%), Positives = 145/500 (29%), Gaps = 177/500 (35%)
Query: 4 NQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAI----- 58
N +++K + + K+ D++ + S+LF+ A A+ AI
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPF-DKKSN-SALFR-----AVGEGNAQLVAIFGGQG 164
Query: 59 --ERQLNELMNRFD-------NLNEGASQRMDAL-EQAMAVAKQFQDKLTGILDWLDKSE 108
+ EL + + +L + +++ + L + K F L IL+WL+
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPS 223
Query: 109 KKIKDMELIPTDE------------EKIQQRIREHDALHKEILRKKPDFT--ELTDIASS 154
P + IQ H + K FT EL
Sbjct: 224 NT-------PDKDYLLSIPISCPLIGVIQ-------LAHYVVTAKLLGFTPGELRSYLKG 269
Query: 155 LMGLVGED--EAAGVADKLQDTADRYGALVEASDNLGQYAFL--------YNQLILSPRF 204
G + A +A D + + + F Y L P
Sbjct: 270 ATG-HSQGLVTAVAIA-----ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 205 S---------------SVTDIKKKLERLNGLWNEVQK---ATNDRGRSLEEALALAEKFW 246
S++++ ++ +VQ TN + + ++
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQE---------QVQDYVNKTNSHL-PAGKQVEIS---- 369
Query: 247 SELQSVMATLRDLQDNLNSQEPPAV---EPKAIQQQQYALKEIKAEIDQTKPEVEQCRA- 302
L + NL V P+++ L++ KA ++Q R
Sbjct: 370 ---------LVNGAKNL-------VVSGPPQSLYGLNLTLRKAKAP-----SGLDQSRIP 408
Query: 303 -SGQK-----------------LMK-----ICGEPDKPEVKKHIEDL-----DSA-WDNV 333
S +K L+ I + K V + +D+ D+ ++
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468
Query: 334 TALFAKREENLIHAM-------EKAMEFHET----LQRKGEQGTITALFAKREE----NL 378
L E ++ + E +F T G G + L + ++ +
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG-LGVLTHRNKDGTGVRV 527
Query: 379 IHAMEKAMEFHETLQQNRDD 398
I A TL N DD
Sbjct: 528 IVA--------GTLDINPDD 539
Score = 57.4 bits (138), Expect = 2e-08
Identities = 96/613 (15%), Positives = 185/613 (30%), Gaps = 250/613 (40%)
Query: 8 PSADYKVVKAQLQEQKFLKKMLA--------DRQHSMSSL---FQMGNEVAANADPAERK 56
P+A + + +QLQEQ F K + D + + L F +G V++ +P++
Sbjct: 23 PTASF-FIASQLQEQ-FNKILPEPTEGFAADDEPTTPAELVGKF-LGY-VSSLVEPSKVG 78
Query: 57 AIERQLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDM-- 114
++ LN + F+N + L G D+
Sbjct: 79 QFDQVLNLCLTEFEN--------------------CY---LEG------------NDIHA 103
Query: 115 ---ELIPTDEEKIQQRIREHDALHKEILR---------KKPDFTELTDIASSLMGLVGED 162
+L+ ++ + + KE+++ K+P F + ++ S+L VGE
Sbjct: 104 LAAKLLQENDTTLVKT--------KELIKNYITARIMAKRP-FDKKSN--SALFRAVGEG 152
Query: 163 EAAGVA------------DKLQDTADRYGALVE-----ASDNLGQYAFLYNQLILSPRFS 205
A VA ++L+D Y LV +++ L + + L F+
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE--LIRTTLDAEKVFT 210
Query: 206 SVTDIKKKLER------------------LNGLWNEVQ---------------------- 225
+I + LE L G+ +Q
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGV---IQLAHYVVTAKLLGFTPGELRSYL 267
Query: 226 KATNDRGRSLEEALALA-----EKFWSELQSVMATL-----RDLQDNLNSQE--PP-AVE 272
K + L A+A+A E F+ ++ + L R E P ++
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR-------CYEAYPNTSLP 320
Query: 273 PKAIQQQQ---------------YALKEIKAEIDQT---KPEVEQCRAS---GQKLMKIC 311
P ++ ++++ +++T P +Q S G K + +
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Query: 312 GEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHETLQRKGEQGTITALF 371
G P + L L + KA Q + F
Sbjct: 381 GPP---------QSL---------------YGLNLTLRKAKAPSGLDQSR-------IPF 409
Query: 372 AKREENL------IHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSL--P------ 417
++R+ + + FH L D D + V + P
Sbjct: 410 SERKLKFSNRFLPVAS-----PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 418 -EDDQEARTQLAEHEKFLRELA------EKEIEKDAT-I-----GLAQRI--LVKSHPDG 462
D + ++ E+ + + E + AT I G A + L + DG
Sbjct: 465 GSDLRVLSGSIS--ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Query: 463 ATVIKHWITIIQS 475
+ +I +
Sbjct: 523 T-----GVRVIVA 530
Score = 53.1 bits (127), Expect = 4e-07
Identities = 91/621 (14%), Positives = 187/621 (30%), Gaps = 199/621 (32%)
Query: 74 EGASQR-----MDALEQAMAV-------AKQFQDKLTGIL----DWLDKSEKKIKDMELI 117
+ S R +LE + V A Q Q++ IL + ++ EL+
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 118 P-----TDEEKIQQRIREHDALHKEILRKKPDFTE--L--TDIASSLMGLVGEDEAAGVA 168
++ + D + L +F L DI + L+ E++
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLT---EFENCYLEGNDIHALAAKLLQENDTT--L 116
Query: 169 DKLQDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTDIKKKLERL-NGLWNEVQKA 227
K ++ Y + A + +++ S F +V + +L + G Q
Sbjct: 117 VKTKELIKNY---ITARIMAKR---PFDKKSNSALFRAVGEGNAQLVAIFGG-----Q-- 163
Query: 228 TNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIK 287
G + + ++ EL+ + T V I+ L E+
Sbjct: 164 ----GNT--------DDYFEELRDLYQT-----------YHVLVGD-LIKFSAETLSELI 199
Query: 288 AEIDQTKPEVEQCRASGQKLMKICGEPD-KPEVKKHIEDLDSA---WDNVTALFAKREEN 343
T + E+ G +++ P P+ + L S + +
Sbjct: 200 R----TTLDAEKVFTQGLNILEWLENPSNTPDK----DYLLSIPISC-PLIGVIQ----- 245
Query: 344 LIH--AMEKAMEFHETLQRKGEQGT-------ITALF---AKREENLIHAMEKAMEF--- 388
L H K + F R +G +TA+ E+ ++ KA+
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 389 -----HET----------LQQNRDDCKKA--------DCNADAVQTFVN----SLPEDDQ 421
+E L+ + ++ + + + VQ +VN LP Q
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 422 ------EARTQ---------LAEHEKFLREL-AEKEIEKDATIGLAQRILVKSH------ 459
L LR+ A +++ + I ++R L S+
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ-SRIPFSERKLKFSNRFLPVA 424
Query: 460 -P------DGATVIKHWITIIQSRWEEVSSWAKQREERLR---------NHLRSLQD--- 500
P A+ + I + + S+ + ++ + LR L
Sbjct: 425 SPFHSHLLVPASDL-----INKDLVKNNVSFNA---KDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 501 ---LDSLLEELLEWLAKCE---SHLLNLEAEPLPDDIPTVERLIEEHKEFMEATSKRQHE 554
+D ++ ++W + +H+L+ P + L +K + T R
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATHILDFG----PGGASGLGVLTHRNK---DGTGVRVIV 529
Query: 555 VDSVRASPSREKLNDNLPHYG 575
++ +P + YG
Sbjct: 530 AGTLDINPDDD--------YG 542
Score = 39.3 bits (91), Expect = 0.007
Identities = 50/302 (16%), Positives = 79/302 (26%), Gaps = 128/302 (42%)
Query: 156 MGLVGED--EAAGVADKLQDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTDIKKK 213
MG+ D + + A + + AD + D G F S+ DI
Sbjct: 1631 MGM---DLYKTSKAAQDVWNRADNH-----FKDTYG---F------------SILDIVIN 1667
Query: 214 LERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAVEP 273
N V + G E+ + E + S M + D E
Sbjct: 1668 --------NPVNLTIHFGG---EKGKRIRENY-----SAM-IFETIVDGKLKTEK----- 1705
Query: 274 KAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNV 333
I EI+ + +K L +
Sbjct: 1706 ------------IFKEIN-------------EHSTSYTFRSEK-------GLLSA----- 1728
Query: 334 T-----ALFAKREENLIHAMEKAMEFHETLQRKGEQ-----------GTITALFAKRE-- 375
T AL MEKA E L+ KG G AL + +
Sbjct: 1729 TQFTQPALT---------LMEKAA--FEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 376 --ENLIH-------AMEKAMEFHETLQQNRDDCK------KADCNADAVQTFVNSLPEDD 420
E+L+ M+ A+ E + N A + +A+Q V + +
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 421 QE 422
Sbjct: 1838 GW 1839
Score = 38.1 bits (88), Expect = 0.012
Identities = 20/130 (15%), Positives = 45/130 (34%), Gaps = 30/130 (23%)
Query: 13 KVVKA--QLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQLNELMNRFD 70
+VV + + L + M ++ VAA+ + + ++ +
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGMIAI--NPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 71 ---NLNEGASQ-----RMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEE 122
N N Q + AL D +T +L+++ +KI +EL ++
Sbjct: 1842 EIVNYNVENQQYVAAGDLRAL-----------DTVTNVLNFI--KLQKIDIIEL----QK 1884
Query: 123 KIQ-QRIREH 131
+ + + H
Sbjct: 1885 SLSLEEVEGH 1894
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple
helical bundle, actin cappin binding, alternative
splicing, calcium; 2.30A {Homo sapiens}
Length = 149
Score = 56.8 bits (137), Expect = 1e-09
Identities = 15/140 (10%), Positives = 58/140 (41%), Gaps = 4/140 (2%)
Query: 205 SSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLN 264
+ DI+++ +++ ++ ++ + R + LE++ + F + + + +++ +
Sbjct: 12 ETAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRF-QFFQRDAEELEKWIQEKLQIAS 70
Query: 265 SQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIE 324
+ +P +Q + + +AE+ + + +G ++ G ++ +
Sbjct: 71 DENY--KDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMIS-EGHFASETIRTRLM 127
Query: 325 DLDSAWDNVTALFAKREENL 344
+L W+ + ++ L
Sbjct: 128 ELHRQWELLLEKMREKGIKL 147
Score = 51.0 bits (122), Expect = 9e-08
Identities = 21/128 (16%), Positives = 53/128 (41%), Gaps = 4/128 (3%)
Query: 58 IERQLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELI 117
I+ + ++++R+ E ++ R LE + + FQ + W+ EK +
Sbjct: 17 IQERRQQVLDRYHRFKELSTLRRQKLEDSYR-FQFFQRDAEELEKWIQ--EKLQIASDEN 73
Query: 118 PTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADR 177
D +Q ++++H A E+ +L + + ++ G + + +L + +
Sbjct: 74 YKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISE-GHFASETIRTRLMELHRQ 132
Query: 178 YGALVEAS 185
+ L+E
Sbjct: 133 WELLLEKM 140
Score = 47.9 bits (114), Expect = 1e-06
Identities = 19/156 (12%), Positives = 46/156 (29%), Gaps = 20/156 (12%)
Query: 463 ATVIKHWITIIQSRWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNL 522
A I+ + R+ + R ++L + R Q EEL +W+ + +
Sbjct: 14 AEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYR-FQFFQRDAEELEKWIQEKLQ----I 68
Query: 523 EAEPLPDDIPTVERLIEEHKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKG 582
++ D ++ +++H+ F + + + +
Sbjct: 69 ASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDE--TGNLMISEGHFASETI---- 122
Query: 583 SKGAEPQFRNPRCRLLWDTWRNVWLLAWERQRRLQE 618
R L W + E+ +L +
Sbjct: 123 ---------RTRLMELHRQWELLLEKMREKGIKLLQ 149
Score = 42.6 bits (100), Expect = 8e-05
Identities = 14/118 (11%), Positives = 41/118 (34%), Gaps = 2/118 (1%)
Query: 376 ENLIHAMEKAMEFHETLQQNRDDCKKA-DCNADAVQTFVNSLPEDDQEARTQLAEHEKFL 434
+ L + +E Q + D ++ + +Q + +D + +L +H+ F
Sbjct: 32 KELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFE 91
Query: 435 RELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERLR 492
E+ ++ + I+ + + +WE + +++ +L
Sbjct: 92 AEVQANSGAIVKLDETGNL-MISEGHFASETIRTRLMELHRQWELLLEKMREKGIKLL 148
Score = 39.5 bits (92), Expect = 0.001
Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 1 MVANQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIER 60
+ D ++ +LQ+ + + + ++ L + GN + + + I
Sbjct: 66 LQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMI-SEGHFASETIRT 124
Query: 61 QLNELMNRFDNLNEGASQRMDALEQ 85
+L EL +++ L E ++ L Q
Sbjct: 125 RLMELHRQWELLLEKMREKGIKLLQ 149
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 51.8 bits (125), Expect = 7e-09
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 652 LTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIA 711
LF+++D N DG + E+ + K + ++ + + D D N G ID EF
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGN-GEIDQNEFAK 60
Query: 712 ALR 714
Sbjct: 61 FYG 63
Score = 29.5 bits (67), Expect = 0.51
Identities = 7/39 (17%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 641 FLRFMNHKKSRLTD-----LFRKMDKNNDGLIPREDFVD 674
F++ K++ + +F+ +D + +G I + +F
Sbjct: 22 VKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAK 60
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 49.8 bits (119), Expect = 9e-08
Identities = 12/100 (12%), Positives = 30/100 (30%), Gaps = 1/100 (1%)
Query: 630 KNFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMG 689
+ D R + + +T F D I RE+F + + +
Sbjct: 4 MATADRDILARLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFD 63
Query: 690 AVADMFDHDYNPGLIDWKEFIAALRPDWEEKKPNTESEKI 729
+ + + G + + +F++ + T +
Sbjct: 64 RLWNEMPVNAK-GRLKYPDFLSRFSSETAATPMATGDSAV 102
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 53.6 bits (129), Expect = 2e-07
Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 606 WLLAWERQRRLQERLNYLIELEKVKNFS-WDDWRKRFLRFMNHK------KSRLTDLFRK 658
W+ + ++ L ++ F + + F+ K + LTD+F+K
Sbjct: 304 WIKKYANNINKSDQKTLCGALSNMRKFEGSQKLAQAAILFIGSKLTTLEERKELTDIFKK 363
Query: 659 MDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVAD--------MFDHDYNPGLIDWKEFI 710
+DKN DG + +++ ++G + ++L + D D N G I++ EFI
Sbjct: 364 LDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKN-GYIEYSEFI 422
Query: 711 AA 712
+
Sbjct: 423 SV 424
Score = 34.7 bits (80), Expect = 0.13
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMF-----DHDYNP 701
+ RL F D + G I +E+ + F + + D+ + D
Sbjct: 432 FSEERLRRAFNLFDTDKSGKITKEE-----LANLFGLTSISEKTWNDVLGEADQNKD--- 483
Query: 702 GLIDWKEFIAALR 714
+ID+ EF++ +
Sbjct: 484 NMIDFDEFVSMMH 496
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 50.8 bits (122), Expect = 3e-07
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 638 RKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDH 697
R + L L FR++D++ + ++F G+ K + E V +D
Sbjct: 25 RAQCLSRGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDR 84
Query: 698 DYNPGLIDWKEFIAALRP 715
+ + G +D +EF+ ALRP
Sbjct: 85 NGS-GTLDLEEFLRALRP 101
Score = 38.9 bits (91), Expect = 0.003
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 18/86 (20%)
Query: 641 FLRFMNHKKSR-----LTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKL--------- 686
FLR + S+ + F K+D++ DG++ +D +
Sbjct: 95 FLRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVL 154
Query: 687 -EMGAVADMFDHDYNPGLIDWKEFIA 711
D + D G + EF
Sbjct: 155 RRFLDNFDSSEKD---GQVTLAEFQD 177
Score = 34.2 bits (79), Expect = 0.093
Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 646 NHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLID 705
++ + RK D+N G + E+F+ + + + + A D + G++
Sbjct: 69 VLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAAFAKLDRSGD-GVVT 127
Query: 706 WKEFIAALRPD 716
+
Sbjct: 128 VDDLRGVYSGR 138
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 51.6 bits (124), Expect = 7e-07
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 16/102 (15%)
Query: 626 LEKVKNFSW-DDWRKRFLRFMNHK------KSRLTDLFRKMDKNNDGLIPREDFVDGIIK 678
+E ++ F + L +M K LTD+FR +DKN DG + R++ +DG K
Sbjct: 315 IENMRKFQNSQKLAQAALLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSK 374
Query: 679 TKFETSKLEMGAVA--------DMFDHDYNPGLIDWKEFIAA 712
E + D D N G ID+ EF+
Sbjct: 375 LSGEEVAVFDLPQIESEVDAILGAADFDRN-GYIDYSEFVTV 415
Score = 37.8 bits (88), Expect = 0.016
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMF-DHDYNP-GLI 704
K +L F+K D++ +G I ++ + + F LE +M D N G +
Sbjct: 423 LSKDKLESAFQKFDQDGNGKISVDE-----LASVFGLDHLESKTWKEMISGIDSNNDGDV 477
Query: 705 DWKEFIAALR 714
D++EF ++
Sbjct: 478 DFEEFCKMIQ 487
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 50.1 bits (120), Expect = 2e-06
Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 17/124 (13%)
Query: 606 WLLAWERQRRLQERLNYLIELEKVKNFSW-DDWRKRFLRFMNHK------KSRLTDLFRK 658
W+ + +++ + + + ++ F + L +M K LT +F K
Sbjct: 284 WIQTYTKEQISVDVPSLDNAILNIRQFQGTQKLAQAALLYMGSKLTSQDETKELTAIFHK 343
Query: 659 MDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDY----------NPGLIDWKE 708
MDKN DG + R + ++G + + A +H+ G I++ E
Sbjct: 344 MDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSE 403
Query: 709 FIAA 712
F+
Sbjct: 404 FVTV 407
Score = 37.4 bits (87), Expect = 0.021
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMF-----DHDYNP 701
+ RL FR D +N G I + + T F S ++ + ++D
Sbjct: 415 LSRERLERAFRMFDSDNSGKISSTE-----LATIFGVSDVDSETWKSVLSEVDKNND--- 466
Query: 702 GLIDWKEFIAALR 714
G +D+ EF L
Sbjct: 467 GEVDFDEFQQMLL 479
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 46.9 bits (112), Expect = 6e-06
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 638 RKRFLRFMNHK-----KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVA 692
+K + + + +L F +D++ G I +E G+ K + +
Sbjct: 35 QKLAMTIIAQQSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPY-NFDLLL 93
Query: 693 DMFDHDYNPGLIDWKEFIAA 712
D D D + G ID+ EFIAA
Sbjct: 94 DQIDSDGS-GKIDYTEFIAA 112
Score = 33.8 bits (78), Expect = 0.14
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 14/85 (16%)
Query: 641 FLRFMNHK----KSRLTDLFRKMDKNNDGLIPREDF--VDGIIKTKFETSKLEMGAVADM 694
F+ + K + FR D +NDG I + + K ++ ++ V M
Sbjct: 109 FIAAALDRKQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRM 168
Query: 695 F-----DHDYNPGLIDWKEFIAALR 714
++D G ID+ EF ++
Sbjct: 169 IRDVDKNND---GKIDFHEFSEMMK 190
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 48.5 bits (116), Expect = 7e-06
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 23/129 (17%)
Query: 606 WLLAWERQRRLQERLNYLIE-LEKVKNFS-WDDWRKRFLRFMNHK------KSRLTDLFR 657
W+ + + L L + ++ F + L +M K +LT++FR
Sbjct: 279 WIQKYSSETPTISDLPSLESAMTNIRQFQAEKKLAQAALLYMASKLTTLDETKQLTEIFR 338
Query: 658 KMDKNNDGLIPREDFVDGIIKTK--------------FETSKLEMGAVADMFDHDYNPGL 703
K+D NNDG++ R++ V G + T + ++ ++ + D D + G
Sbjct: 339 KLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGS-GS 397
Query: 704 IDWKEFIAA 712
I++ EFIA+
Sbjct: 398 IEYSEFIAS 406
Score = 36.6 bits (85), Expect = 0.031
Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 1/106 (0%)
Query: 626 LEKVKNFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSK 685
+ D + + ++ L +D + G I +F+ I S+
Sbjct: 357 YHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFIASAIDRTILLSR 416
Query: 686 LEMGAVADMFDHDYNPGLIDWKEFIAALRPDWEEKKPNTESEKIHD 731
M MFD D + G I KE + I
Sbjct: 417 ERMERAFKMFDKDGS-GKISTKELFKLFSQADSSIQMEELESIIEQ 461
Score = 36.2 bits (84), Expect = 0.038
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 647 HKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDW 706
+ R+ F+ DK+ G I ++ + E+ ++ + D++ G +D+
Sbjct: 414 LSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNN-KDGEVDF 472
Query: 707 KEFIAALR 714
EF+ L+
Sbjct: 473 NEFVEMLQ 480
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 46.0 bits (110), Expect = 7e-06
Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 24/126 (19%)
Query: 630 KNFS-WDDWRKRFLRFMNHK-----KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFET 683
K FS + ++K LR + + L ++F +D + G I E+ G+ +
Sbjct: 1 KQFSAMNKFKKMALRVIAESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANL 60
Query: 684 SKLEMGAVADMFDHDYNPGLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCR 743
+ E+ + D D + G ID+KEFIAA K E
Sbjct: 61 KESEILDLMQAADVDNS-GTIDYKEFIAATLH---LNKIEREDH--------------LF 102
Query: 744 QKFRVF 749
F F
Sbjct: 103 AAFTYF 108
Score = 34.8 bits (81), Expect = 0.039
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 646 NHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLID 705
N K+S + DL + D +N G I ++F+ + + + A FD D + G I
Sbjct: 59 NLKESEILDLMQAADVDNSGTIDYKEFIAATLHLNKIEREDHLFAAFTYFDKDGS-GYIT 117
Query: 706 WKEFIAALR 714
E A
Sbjct: 118 PDELQQACE 126
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 46.1 bits (110), Expect = 8e-06
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 638 RKRFLRFMNHK-------KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGA 690
R + M H+ + +LF K+D N++G + + + K ++
Sbjct: 20 RNIIINIMAHELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVL--ASVGIKKWDINR 77
Query: 691 VADMFDHDYNPGLIDWKEFIAA 712
+ D + G I + EF+A
Sbjct: 78 ILQALDINDR-GNITYTEFMAG 98
Score = 33.4 bits (77), Expect = 0.15
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 11/84 (13%)
Query: 641 FLRFMNHKK----SRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKL-EMGAVADMF 695
F+ K + L F K+DK+ DG I + D V + + + +
Sbjct: 95 FMAGCYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKVLDNNDIDNFFLSVHS- 153
Query: 696 DHD-----YNPGLIDWKEFIAALR 714
+ I ++EF +
Sbjct: 154 IKKGIPREHIINKISFQEFKDYML 177
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 46.0 bits (110), Expect = 9e-06
Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 626 LEKVKNFS-WDDWRKRFLRFMNHK-----KSRLTDLFRKMDKNNDGLIPREDFVDGIIKT 679
L+ +KNF ++ +K L + + L ++F +D +N G + ++ +DG+ K
Sbjct: 27 LKNLKNFKKENELKKIALTIIAKHLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKI 86
Query: 680 KFETSKLEMGAVADMFDHDYNPGLIDWKEFIAA 712
++ ++ V D + + G I + +F+AA
Sbjct: 87 GYQKIPPDIHQVLRDIDSNAS-GQIHYTDFLAA 118
Score = 34.1 bits (79), Expect = 0.086
Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 646 NHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLID 705
+ + R +D N G I DF+ I + K FD D N G I
Sbjct: 89 QKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDKQTYLKKEVCLIPFKFFDIDGN-GKIS 147
Query: 706 WKEFIAALRPD-WEEKKPNTESEKIHDEV 733
+E D E + + + EV
Sbjct: 148 VEELKRIFGRDDIENPLIDKAIDSLLQEV 176
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 43.9 bits (104), Expect = 1e-05
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 648 KKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWK 707
+ +RL +F D N G + RE+F + T+ + AV D D + G I ++
Sbjct: 25 ELARLRSVFAACDANRSGRLEREEF--RALCTELRVRPADAEAVFQRLDADRD-GAITFQ 81
Query: 708 EFIAALR 714
EF
Sbjct: 82 EFARGFL 88
Score = 28.1 bits (63), Expect = 2.7
Identities = 7/41 (17%), Positives = 20/41 (48%)
Query: 639 KRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKT 679
+ + + + +F+++D + DG I ++F G + +
Sbjct: 50 RALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGFLGS 90
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 47.1 bits (112), Expect = 1e-05
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKE 708
+ L LF + G +D + K + + + M ++D G + +
Sbjct: 121 TNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTK-GRMSYIT 179
Query: 709 FIAA 712
+A
Sbjct: 180 LVAV 183
Score = 38.3 bits (89), Expect = 0.008
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 641 FLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYN 700
+ N L FRK+D N++G + R++F + ++ K A+ D D
Sbjct: 180 LVAVANDLA-ALVADFRKIDTNSNGTLSRKEFREHFVRLG-FDKKSVQDALFRYADED-E 236
Query: 701 PGLIDWKEFIAA 712
+ + E++
Sbjct: 237 SDDVGFSEYVHL 248
Score = 34.4 bits (79), Expect = 0.14
Identities = 9/76 (11%), Positives = 22/76 (28%), Gaps = 11/76 (14%)
Query: 641 FLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMF----- 695
++ L L+ D + G + +E+ + + F
Sbjct: 245 YVHLGLCL-LVLRILYAFADFDKSGQLSKEEVQK--VLEDAHIPESARKKFEHQFSVVDV 301
Query: 696 DHDYNPGLIDWKEFIA 711
D + ++EF+
Sbjct: 302 DDS---KSLSYQEFVM 314
Score = 32.9 bits (75), Expect = 0.36
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 7/101 (6%)
Query: 633 SWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVA 692
S ++R+ F+R KKS LFR D++ + ++V L + +
Sbjct: 206 SRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVGFSEYV------HLGLCLLVLRILY 259
Query: 693 DMFDHDYNPGLIDWKEFIAALRPDWEEKKPNTESEKIHDEV 733
D D + G + +E L + + E V
Sbjct: 260 AFADFDKS-GQLSKEEVQKVLEDAHIPESARKKFEHQFSVV 299
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 43.2 bits (102), Expect = 2e-05
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKE 708
K++ ++F K DK+ DG + + + +KT ++ L + + D + G + +
Sbjct: 9 KAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAH--IWSLCDTK-DCGKLSKDQ 65
Query: 709 FIAALR 714
F A
Sbjct: 66 FALAFH 71
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 44.7 bits (106), Expect = 3e-05
Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 20/110 (18%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIK---------TKFETSKLEMGAVADMFDHDY 699
++ +++D DG I RED+ ++ K E ++ E VAD
Sbjct: 13 LRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAP 72
Query: 700 NPGLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVF 749
I +E + ++ + + +
Sbjct: 73 G-VRISVEEAAVNATDSLLKM----------KGEEKAMAVIQSLIMYDCI 111
Score = 38.2 bits (89), Expect = 0.004
Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 1/101 (0%)
Query: 624 IELEKVKNFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFET 683
I +E+ + D K + ++ +D + DG + +F + +
Sbjct: 76 ISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDL 135
Query: 684 SKLEMGAVADMFDHDYNPGLIDWKEFIAALRPDWEEKKPNT 724
+ + + D + G I EF+ + +
Sbjct: 136 TDDKAITCFNTLDFN-KNGQISRDEFLVTVNDFLFGLEETA 175
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 42.8 bits (101), Expect = 3e-05
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKE 708
+ + LF DK G + ++++ ++L + ++ D D G + +E
Sbjct: 13 RLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLAS--IWNLSDID-QDGKLTAEE 69
Query: 709 FIAALR 714
FI A+
Sbjct: 70 FILAMH 75
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 44.4 bits (105), Expect = 4e-05
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 651 RLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFI 710
RL FR +D+N G + R D I + + + F D + +D+ F+
Sbjct: 30 RLHHRFRALDRNKKGYLSRMDL--QQIGALAVNPLGDR--IIESFFPDGS-QRVDFPGFV 84
Query: 711 AALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVF 749
L + +TE++ + F+++
Sbjct: 85 RVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLY 123
Score = 28.6 bits (64), Expect = 7.1
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 646 NHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIK-TKFETSKLEMGAVAD-MF---DHDYN 700
N ++++L F+ D + DG I R + + + + ++ ++ +AD D D +
Sbjct: 110 NSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGD 169
Query: 701 PGLIDWKEFIAAL-RPDWEEK 720
G + + EF +L + D E+K
Sbjct: 170 -GAVSFVEFTKSLEKMDVEQK 189
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 42.5 bits (101), Expect = 6e-05
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 15/98 (15%)
Query: 652 LTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIA 711
LF+++D N DG + E+ + K + ++ + + D D N G ID EF
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGN-GEIDQNEFAK 60
Query: 712 ALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVF 749
+ + + + +++
Sbjct: 61 FYGSIQGQDLSDDKIG--------------LKVLYKLM 84
Score = 31.7 bits (73), Expect = 0.38
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 641 FLRFMNHKKSR--------LTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVA 692
F +F + + L L++ MD + DG + +E+ K E E A
Sbjct: 58 FAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVA-EQVMKA 116
Query: 693 DMFDHDYNPGLIDWKEFIA 711
D + D G I +EF+
Sbjct: 117 DA-NGD---GYITLEEFLE 131
Score = 31.0 bits (71), Expect = 0.68
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 646 NHKKSRLTDLFRKMDKNNDGLIPREDFVD---GIIKTKFETSKLEMGAVADMFDHDYNPG 702
+ L +F+ +D + +G I + +F I K+ + + + D D + G
Sbjct: 32 IKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGD-G 90
Query: 703 LIDWKEFIAALRP----DWEE 719
+ +E + + E
Sbjct: 91 KLTKEEVTSFFKKHGIEKVAE 111
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 43.6 bits (103), Expect = 7e-05
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 19/102 (18%)
Query: 623 LIELEKVKNFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFE 682
E V ++ + +F+ ++ G + +F E
Sbjct: 10 AEENGAVGAADAAQLQEWYKKFL--------------EECPSGTLFMHEFKRFFKVPDNE 55
Query: 683 TSKLEMGAVADMFDHDYNPGLIDWKEFIAAL----RPDWEEK 720
+ + A+ FD + + ID+ E++AAL R E K
Sbjct: 56 EATQYVEAMFRAFDTNGD-NTIDFLEYVAALNLVLRGTLEHK 96
Score = 34.8 bits (80), Expect = 0.058
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 651 RLTDLFRKMDKNNDGLIPREDFVDGIIKTK 680
+ +F +D+N DG + +FV+G + K
Sbjct: 149 VVDRIFLLVDENGDGQLSLNEFVEGARRDK 178
Score = 29.8 bits (67), Expect = 2.7
Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 21/97 (21%)
Query: 641 FLRFMNHKKS-----RLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMF 695
++ +N +L F+ DK+ +G I R++ +D + + A+
Sbjct: 81 YVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQ 140
Query: 696 DHDYNP----------------GLIDWKEFIAALRPD 716
P G + EF+ R D
Sbjct: 141 GKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARRD 177
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 43.2 bits (102), Expect = 8e-05
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 22/111 (19%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGI--IKTKFETSKLEMGAVADMFDHDYNP----- 701
++ F ++D + DG I R DF + E + D ++
Sbjct: 5 VQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAV 64
Query: 702 ---GLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVF 749
ID FI + +E N E++ + + L FR
Sbjct: 65 AGGKGIDETTFINS----MKEMVKNPEAKSVVEGPLPLF--------FRAV 103
Score = 38.9 bits (91), Expect = 0.002
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 643 RFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKL-EMGAVADMFDHDYNP 701
+ + L FR +D N D I R+++ + + D ++D
Sbjct: 87 EAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAIDT-NND--- 142
Query: 702 GLIDWKEFIAALR 714
GL+ +EF+ A
Sbjct: 143 GLLSLEEFVIAGS 155
Score = 33.9 bits (78), Expect = 0.085
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 639 KRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGI 676
F + K+ F +D NNDGL+ E+FV
Sbjct: 117 GIFFGMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAG 154
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 42.2 bits (100), Expect = 1e-04
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 650 SRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEF 709
RL F+K+D +N G + E+F + + ++ V D+FD D N G +D+KEF
Sbjct: 6 KRLGKRFKKLDLDNSGSLSVEEF--MSLPELQQNPLVQR--VIDIFDTDGN-GEVDFKEF 60
Query: 710 IAAL-----RPDWEEK 720
I + + D E+K
Sbjct: 61 IEGVSQFSVKGDKEQK 76
Score = 33.0 bits (76), Expect = 0.16
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 17/94 (18%)
Query: 641 FLRFMNHKKSR------LTDLFRKMDKNNDGLIPREDFVDGIIKTKFE--TSKLEMGAVA 692
F+ ++ + L FR D + DG I + + V
Sbjct: 60 FIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVD 119
Query: 693 DMF-----DHDYNPGLIDWKEFIAALR-PDWEEK 720
D D G I ++EF A + D +K
Sbjct: 120 KTIINADKDGD---GRISFEEFCAVVGGLDIHKK 150
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 40.6 bits (96), Expect = 1e-04
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 652 LTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIA 711
L +LF+ +D +N G I ++ DG+ + E + E+ + D D D + G ID+ EFIA
Sbjct: 25 LKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKS-GTIDYGEFIA 83
Query: 712 A 712
A
Sbjct: 84 A 84
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 40.5 bits (95), Expect = 1e-04
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKE 708
+ + F+ + + +G IP + K+K +L + ++ D D G + E
Sbjct: 8 RQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSH--IWELSDFD-KDGALTLDE 64
Query: 709 FIAALR 714
F AA
Sbjct: 65 FCAAFH 70
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 42.3 bits (100), Expect = 2e-04
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 19/105 (18%)
Query: 626 LEKVKNFSWD-DWRKRFLRFMNHK------KSRLTDLFRKMDKNNDGLIPREDFVDGIIK 678
L +K F + + FM K LT +FR++D N DG + R++ ++G K
Sbjct: 9 LGNMKKFQSSQKLAQAAMLFMGSKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRK 68
Query: 679 TKFETSKLEMGA--------VADMF---DHDYNPGLIDWKEFIAA 712
V + D D N G I++ EF+
Sbjct: 69 LMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRN-GYIEYSEFVTV 112
Score = 35.7 bits (83), Expect = 0.031
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 646 NHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLID 705
+ ++ + + + +D + +G I +FV + + S+ + A FD D + G I
Sbjct: 83 SQIEAEVDHILQSVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGS-GKIT 141
Query: 706 WKEFIAALRPDWEEKKPNTESEKIHDEV 733
+E + + ++ E
Sbjct: 142 NEELGRLFG---VTEVDDETWHQVLQEC 166
Score = 32.3 bits (74), Expect = 0.38
Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 641 FLRFMNHK-----KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKL-EMGAVADM 694
F+ K + RL F++ D + G I E+ T+ + ++ D
Sbjct: 109 FVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQECDK 168
Query: 695 FDHDYNPGLIDWKEFIAALR--PDWE 718
++D G +D++EF+ ++ D +
Sbjct: 169 -NND---GEVDFEEFVEMMQKICDVK 190
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 42.5 bits (100), Expect = 2e-04
Identities = 13/110 (11%), Positives = 32/110 (29%), Gaps = 16/110 (14%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGI------IKTKFETSKLEMGAVADMF---DHDY 699
SRL F D ++DG + ++ + + E + AV F +
Sbjct: 35 LSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEP 94
Query: 700 NPGLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVF 749
+ ++++ A + + + + + V
Sbjct: 95 V-NGLLREDWVEAN------RVFAEAERERERRGEPSLIALLSNSYYDVL 137
Score = 34.8 bits (80), Expect = 0.071
Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 13/94 (13%)
Query: 626 LEKVKNFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSK 685
+E + F+ + + + + +D + DG + ++ KT +
Sbjct: 104 VEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDEL-----KTMMKAFD 158
Query: 686 LEMGAVADMF-----DHDYNPGLIDWKEFIAALR 714
+ A F D G ++ E + R
Sbjct: 159 VPQEAAYTFFEKADTDKS---GKLERTELVHLFR 189
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 40.5 bits (95), Expect = 2e-04
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKE 708
+ + FR + + I + K+K +L + ++ D D G + E
Sbjct: 21 REYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSY--IWELSDAD-CDGALTLPE 77
Query: 709 FIAALR 714
F AA
Sbjct: 78 FCAAFH 83
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 42.0 bits (99), Expect = 2e-04
Identities = 18/120 (15%), Positives = 33/120 (27%), Gaps = 31/120 (25%)
Query: 648 KKSRLTDLFRKMDKNNDGLIPREDFVDGI------------------IKTKFETSKLEMG 689
RL F + D + +G + R DF +K F +
Sbjct: 5 ASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLA 64
Query: 690 AVADMFDHDYNPGLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVF 749
A D G + ++FI E+ + + + VK + +
Sbjct: 65 KEAG-VGSD---GSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGI---------VGMC 111
Score = 37.0 bits (86), Expect = 0.010
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 643 RFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPG 702
F + + DKN DG I ++F + T SK E + D + G
Sbjct: 95 SFNRVLGPVVKGIVGMCDKNADGQINADEFAAWL--TALGMSKAEAAEAFNQVDTN-GNG 151
Query: 703 LIDWKEFIAALR 714
+ E + A+R
Sbjct: 152 ELSLDELLTAVR 163
Score = 36.7 bits (85), Expect = 0.011
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 9/93 (9%)
Query: 630 KNFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETS----- 684
+ F D N L ++ +DG + E F+ FE
Sbjct: 38 EAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFN 97
Query: 685 ---KLEMGAVADMFDHDYNPGLIDWKEFIAALR 714
+ + M D + + G I+ EF A L
Sbjct: 98 RVLGPVVKGIVGMCDKNAD-GQINADEFAAWLT 129
Score = 32.8 bits (75), Expect = 0.26
Identities = 6/38 (15%), Positives = 18/38 (47%)
Query: 639 KRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGI 676
+L + K+ + F ++D N +G + ++ + +
Sbjct: 125 AAWLTALGMSKAEAAEAFNQVDTNGNGELSLDELLTAV 162
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 42.5 bits (100), Expect = 2e-04
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 18/105 (17%)
Query: 651 RLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFI 710
RL F +DK +G + REDF + + F + ++++ F+
Sbjct: 30 RLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDR----IINAFFSEGE-DQVNFRGFM 84
Query: 711 AAL------RPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVF 749
L + + K N K FR++
Sbjct: 85 RTLAHFRPIEDNEKSKDVNGPEPLNSRSNK-------LHFAFRLY 122
Score = 32.1 bits (73), Expect = 0.43
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 646 NHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIK-TKFETSKLEMGAVAD-MF---DHDYN 700
N + ++L FR D + D I R++ + + S ++G++AD D D
Sbjct: 109 NSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQD-G 167
Query: 701 PGLIDWKEFIAAL-RPDWEEK 720
I + EF+ L + D E+K
Sbjct: 168 DSAISFTEFVKVLEKVDVEQK 188
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 39.0 bits (91), Expect = 6e-04
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKE 708
+R+++ N G + D + K+ L + D+ D D G++ +E
Sbjct: 10 NPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGK--IWDLADTD-GKGVLSKQE 66
Query: 709 FIAALR 714
F ALR
Sbjct: 67 FFVALR 72
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 40.5 bits (95), Expect = 0.001
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 651 RLTDLFRKMDKN--NDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKE 708
L +LF+K+ + +DGLI +E+F + + + + + D+FD N G+I++ E
Sbjct: 38 ALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLF-ADRIFDVFDVKRN-GVIEFGE 95
Query: 709 FIAAL 713
F+ +L
Sbjct: 96 FVRSL 100
Score = 32.8 bits (75), Expect = 0.31
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIK 678
+ + F + D+ NDG I +++ D +
Sbjct: 154 EVMVDKAFVQADRKNDGKIDIDEWKDFVSL 183
Score = 31.7 bits (72), Expect = 0.59
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 3/100 (3%)
Query: 639 KRFLRFMNHKKSRLTD-LFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVA-DMFD 696
+ L ++++ D +F D +G+I +FV + E A ++D
Sbjct: 62 QLALFRNRNRRNLFADRIFDVFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYD 121
Query: 697 HDYNPGLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRL 736
G I+ +E + E + + I V +
Sbjct: 122 LRQT-GFIEREELKEMVVALLHESELVLSEDMIEVMVDKA 160
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 39.8 bits (93), Expect = 0.001
Identities = 8/72 (11%), Positives = 20/72 (27%), Gaps = 3/72 (4%)
Query: 643 RFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPG 702
+ +F D + D +I + ++ + K + A D
Sbjct: 102 SLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVY--MSYGIPKSDCDAAFDTLSDG-GKT 158
Query: 703 LIDWKEFIAALR 714
++ + F
Sbjct: 159 MVTREIFARLWT 170
Score = 38.3 bits (89), Expect = 0.005
Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 26/129 (20%)
Query: 611 ERQRRLQERLNYLI-----------ELEKV-----KNFSWDDWRKRFLRFMNHKKSRLTD 654
++ ++ N + E SW K+ K
Sbjct: 9 FQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDG 68
Query: 655 LFRKMDKNNDGLIPREDFVDGIIKTKFETSKLE---------MGAVADMFDHDYNPGLID 705
L + D+N D + +E+++ + K E M + D+ D + +ID
Sbjct: 69 LRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGD-NIID 127
Query: 706 WKEFIAALR 714
E+
Sbjct: 128 KHEYSTVYM 136
Score = 35.2 bits (81), Expect = 0.047
Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 31/120 (25%)
Query: 649 KSRLTDLFRKM-DKNNDGLIPREDFVDGI------------------IKTKFETSKLEMG 689
++++ +F D N+DG+I +DF I + + +
Sbjct: 11 RNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLR 70
Query: 690 AVADMFDHDYNPGLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVF 749
AD + D + +E++ W E + E + E F V
Sbjct: 71 KYADE-NED---EQVTKEEWLKM----WAECVKSVEKGESLPEWLTK----YMNFMFDVN 118
Score = 34.4 bits (79), Expect = 0.069
Identities = 6/38 (15%), Positives = 9/38 (23%)
Query: 639 KRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGI 676
KS F + ++ RE F
Sbjct: 132 STVYMSYGIPKSDCDAAFDTLSDGGKTMVTREIFARLW 169
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 38.0 bits (89), Expect = 0.001
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 13/82 (15%)
Query: 639 KRFLRFMNHKK---SRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKL------EMG 689
K+F + + KK + +F +DK+ G I ++ + + L +
Sbjct: 27 KKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLM 86
Query: 690 AVADMFDHDYNPGLIDWKEFIA 711
A D D D G I +EF
Sbjct: 87 AAGDK-DGD---GKIGVEEFST 104
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 40.3 bits (94), Expect = 0.001
Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 24/148 (16%)
Query: 613 QRRLQERLNYLIELEKVKNFSWDD---WRKRFLR-------------------FMNHKKS 650
++ R L LE F+ + + F F +
Sbjct: 42 MATVRHRPEALELLEAQSKFTKKELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDST 101
Query: 651 RLTD-LFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEF 709
LF D +++G + EDF+ G+ T + ++ +++D + + G I +E
Sbjct: 102 TYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKD-GYITKEEM 160
Query: 710 IAALRPDWEEKKPNTESEKIHDEVKRLV 737
+ ++ ++ T D ++ V
Sbjct: 161 LDIMKAIYDMMGKCTYPVLKEDAPRQHV 188
Score = 34.9 bits (80), Expect = 0.063
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIK 678
+ + F+KMDKN DG++ ++F++ K
Sbjct: 185 RQHVETFFQKMDKNKDGVVTIDEFIESCQK 214
Score = 28.3 bits (63), Expect = 7.9
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 22/95 (23%)
Query: 641 FLRFMNH-----KKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVAD-- 693
F++ ++ + +L F D N DG I +E+ +D + K + +
Sbjct: 124 FIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDA 183
Query: 694 -------MF-----DHDYNPGLIDWKEFIAALRPD 716
F + D G++ EFI + + D
Sbjct: 184 PRQHVETFFQKMDKNKD---GVVTIDEFIESCQKD 215
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP:
a.7.1.1
Length = 107
Score = 37.9 bits (88), Expect = 0.002
Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 392 LQQNRDDCKKADCNADAVQTFVNS--LPEDDQEARTQLAEHEKFLRELAEKEIEKDATIG 449
LQ DC+ A+ A + F+N+ + +HE F + + E + A
Sbjct: 5 LQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQT 64
Query: 450 LAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERL 491
+A +++ ++H + ++ + RW + ++ RL
Sbjct: 65 VADQLIAQNHYA-SNLVDEKRKQVLERWRHLKEGLIEKRSRL 105
Score = 35.6 bits (82), Expect = 0.009
Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 18/121 (14%)
Query: 498 LQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEATSKRQHEVDS 557
LQ E W++ E+ L A+ + VE LI++H++F +A + + ++ +
Sbjct: 5 LQLYMRDCELAESWMSAREAFL---NADDDANAGGNVEALIKKHEDFDKAINGHEQKIAA 61
Query: 558 VRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFRNPRCRLLWDTWRNVWLLAWERQRRLQ 617
++ ++L HY + + + + + WR++ E++ RL
Sbjct: 62 LQTVA--DQLIAQ-NHY------------ASNLVDEKRKQVLERWRHLKEGLIEKRSRLG 106
Query: 618 E 618
+
Sbjct: 107 D 107
Score = 33.3 bits (76), Expect = 0.072
Identities = 11/81 (13%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 4 NQKPPSADYKVVKAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQLN 63
N + V+A +++ + K + + +++L + +++ A + ++ +
Sbjct: 27 NADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQ-NHYASNLVDEKRK 85
Query: 64 ELMNRFDNLNEGASQRMDALE 84
+++ R+ +L EG ++ L
Sbjct: 86 QVLERWRHLKEGLIEKRSRLG 106
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 39.1 bits (92), Expect = 0.002
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKE 708
L +LF+ +D +N G I ++ DG+ + E + E+ + D D D + G ID+ E
Sbjct: 9 IGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKS-GTIDYGE 67
Query: 709 FIAA 712
FIAA
Sbjct: 68 FIAA 71
Score = 32.2 bits (74), Expect = 0.42
Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 19/115 (16%)
Query: 641 FLRFMNHKKSR-----LTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKL-EMGAVADM 694
F+ H L F DK+ G I ++ + + +M D
Sbjct: 68 FIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDDMIKEIDQ 127
Query: 695 FDHDYNPGLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVF 749
D+D G ID+ EF A +R + + + R +
Sbjct: 128 -DND---GQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNL---------RDALGLV 169
Score = 31.8 bits (73), Expect = 0.47
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 646 NHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLID 705
+S + DL D + G I +F+ + + + + FD D + G I
Sbjct: 42 ELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGS-GYIT 100
Query: 706 WKEFIAALR 714
E A +
Sbjct: 101 LDEIQQACK 109
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 36.3 bits (85), Expect = 0.002
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 650 SRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEF 709
S +F K DKN DG + ++F + + ++ ++ + D D N G ++ EF
Sbjct: 1 SSAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGN-GELNADEF 59
Query: 710 IAALR 714
+ +
Sbjct: 60 TSCIE 64
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 39.7 bits (92), Expect = 0.002
Identities = 13/110 (11%), Positives = 33/110 (30%), Gaps = 17/110 (15%)
Query: 650 SRLTDLFRKMDKNNDGLIPREDFVDGIIKTKF----------ETSKLEMGAVADMFDHDY 699
+ +++ D +++G I ++ D E + + +D +
Sbjct: 11 AGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATF 70
Query: 700 NPGLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVF 749
+ G + +E + P E E D + +R +
Sbjct: 71 D-GRLQIEELANMILPQEENFLLIFRREAPLDNSVEF------MKIWRKY 113
Score = 31.2 bits (70), Expect = 1.1
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 13/101 (12%)
Query: 652 LTDLFRKMDKNNDGLIPREDFV------------DGIIKTKFETSKLEMGAVADMFDHDY 699
+ + DKN DG + D + + K + + +D
Sbjct: 150 TDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSR 209
Query: 700 NPGLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLC 740
G ++ E ++ E +P+ + + L+ C
Sbjct: 210 T-GALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHC 249
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 38.2 bits (89), Expect = 0.003
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 630 KNFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETS----- 684
F R ++ L D++ D I RE+FV G +K +
Sbjct: 35 AEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQRITREEFVTGAVKRLRDKPDRFAE 94
Query: 685 --KLEMGAVADMFDHDYNPGLIDWKEFIAALR 714
+ + A + D D + G + + AL
Sbjct: 95 MARPFLHAALGVADTDGD-GAVTVADTARALT 125
Score = 35.9 bits (83), Expect = 0.018
Identities = 20/120 (16%), Positives = 34/120 (28%), Gaps = 32/120 (26%)
Query: 648 KKSRLTDLFRKMDKNNDGLIPREDFVDGI------------------IKTKFETSKLEMG 689
+ R+ F D++ +G I R DF + E +
Sbjct: 2 YERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLA 61
Query: 690 AVADMFDHDYNPGLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVF 749
+AD D D I +EF+ + KP+ +E + V
Sbjct: 62 GIAD-RDGD---QRITREEFVTGAVKRLRD-KPDRFAEMARPFLHAA---------LGVA 107
Score = 35.5 bits (82), Expect = 0.028
Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 5/73 (6%)
Query: 643 RFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKL-EMGAVADMFDHDYNP 701
RF + L D + DG + D + + A D D D
Sbjct: 91 RFAEMARPFLHAALGVADTDGDGAVTVADTARALTAFGVPEDLARQAAAALDT-DGD--- 146
Query: 702 GLIDWKEFIAALR 714
G + E + A
Sbjct: 147 GKVGETEIVPAFA 159
Score = 32.0 bits (73), Expect = 0.43
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 639 KRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETS 684
R L + +D + DG + + V ++ T
Sbjct: 121 ARALTAFGVPEDLARQAAAALDTDGDGKVGETEIVPAF--ARYFTV 164
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 38.6 bits (90), Expect = 0.003
Identities = 24/124 (19%), Positives = 35/124 (28%), Gaps = 22/124 (17%)
Query: 639 KRFLRFMNHK-KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFET-------SKLEMGA 690
K F N + R +F +D N++G I ++ V +K A
Sbjct: 4 KLTSDFDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDA 63
Query: 691 VADMFDHD--YNPGLIDWKEFIAALRP---DWEEKKPNTESEKIHDEVKRLVQLCTCRQK 745
V F DW +I + D EK E I L
Sbjct: 64 VEAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDAL--------- 114
Query: 746 FRVF 749
F +
Sbjct: 115 FDIV 118
Score = 36.7 bits (85), Expect = 0.015
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 1/100 (1%)
Query: 626 LEKVKNFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSK 685
+E K + D+ K + LF +DK+ +G I +++ S
Sbjct: 85 IEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSS 144
Query: 686 LEMGAVADMFDHDYNPGLIDWKEFIAALRPDWEEKKPNTE 725
+ + D D G +D E W P E
Sbjct: 145 EDCEETFRVCDID-ESGQLDVDEMTRQHLGFWYTMDPACE 183
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 38.6 bits (90), Expect = 0.003
Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 26/135 (19%)
Query: 624 IELEKVKNFSWDD---WRKRFLR-------------------FMNHKKSRLTD-LFRKMD 660
++ + V+ S + W K+F+ ++ ++ + +F D
Sbjct: 3 MDSKAVEELSATECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFD 62
Query: 661 KNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRPDWEEK 720
N DG I ++V + ++ ++D D N G ID E + ++
Sbjct: 63 FNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGN-GCIDRGELLNIIKAIRAIN 121
Query: 721 KPNTES--EKIHDEV 733
+ N E+ + V
Sbjct: 122 RCNEAMTAEEFTNMV 136
Score = 33.6 bits (77), Expect = 0.17
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTK 680
+ +F K+D N DG + E+F++G+ K +
Sbjct: 130 EEFTNMVFDKIDINGDGELSLEEFMEGVQKDE 161
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 37.7 bits (88), Expect = 0.005
Identities = 9/73 (12%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 641 FLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYN 700
F + + F +D++ G + + I + S + + + +
Sbjct: 62 FKELWAALNA-WKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKN-- 118
Query: 701 PGLIDWKEFIAAL 713
G I + +++A
Sbjct: 119 -GRIFFDDYVACC 130
Score = 30.8 bits (70), Expect = 1.1
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 640 RFLRFMNHKKSRLTDLFRKMDKNNDGLI 667
++ + LTD FRK D G
Sbjct: 125 DYVACCVKLR-ALTDFFRKRDHLQQGSA 151
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 38.0 bits (88), Expect = 0.005
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 638 RKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDH 697
K ++R+ LF+ MD + DG++ E+F + F+ ++ AV ++
Sbjct: 93 CKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYC--KNFQLQCADVPAVYNVITD 150
Query: 698 DYNPGLIDWKEFIAALR 714
D +
Sbjct: 151 G-GKVTFDLNRYKELYY 166
Score = 33.0 bits (75), Expect = 0.21
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 15/104 (14%)
Query: 649 KSRLTDLFRKM-DKNNDGLIPREDFVDGIIK-----------TKFETSKLEMGAVADMF- 695
K ++ F D N+DG I DF D + + +++ + +
Sbjct: 7 KQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLK 66
Query: 696 -DHDYNP-GLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLV 737
D N ++ W+E++A K + +
Sbjct: 67 GRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFL 110
Score = 32.6 bits (74), Expect = 0.27
Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 10/94 (10%)
Query: 630 KNFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLE-- 687
+ + + DL + D N D ++ E+++ KT +
Sbjct: 40 EVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADL 99
Query: 688 -------MGAVADMFDHDYNPGLIDWKEFIAALR 714
+ + D + G++D +EF +
Sbjct: 100 PAWCQNRIPFLFKGMDVSGD-GIVDLEEFQNYCK 132
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 36.1 bits (84), Expect = 0.007
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 13/85 (15%)
Query: 639 KRFLRFMNHKK---SRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKL------EMG 689
++F + K S++ D+FR +D + G + ++ + K + + +L +
Sbjct: 27 QKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLM 86
Query: 690 AVADMFDHDYNPGLIDWKEFIAALR 714
AD D D G I EF +
Sbjct: 87 DAADN-DGD---GKIGADEFQEMVH 107
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 37.4 bits (87), Expect = 0.007
Identities = 12/110 (10%), Positives = 27/110 (24%), Gaps = 15/110 (13%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTK-----FETSKLEMGAVADMFDHDYN--- 700
R +F +D N +G I ++ V + + V
Sbjct: 19 IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGME 78
Query: 701 -PGLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVF 749
I + +F+ + + + + F +F
Sbjct: 79 YGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWG------DAVFDIF 122
Score = 30.9 bits (70), Expect = 1.1
Identities = 13/83 (15%), Positives = 22/83 (26%), Gaps = 11/83 (13%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMF-----DHDYNPGL 703
+ +F DK+ G I +++ K F D+ G
Sbjct: 112 REWGDAVFDIFDKDGSGTITLDEWKA-YGKISGI--SPSQEDCEATFRHCDLDNA---GD 165
Query: 704 IDWKEFIAALRPDWEEKKPNTES 726
+D E W P +
Sbjct: 166 LDVDEMTRQHLGFWYTLDPEADG 188
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo
sapiens}
Length = 129
Score = 36.6 bits (84), Expect = 0.008
Identities = 14/82 (17%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 421 QEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKH----WITI--IQ 474
+E ++ H++F L + + E++A + + + + + + +T I
Sbjct: 45 EEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIIN 104
Query: 475 SRWEEVSSWAKQREERLRNHLR 496
S+WE+V +R+ L
Sbjct: 105 SKWEKVQQLVPKRDHALLEEQS 126
Score = 30.8 bits (69), Expect = 0.77
Identities = 14/95 (14%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 75 GASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDAL 134
G++++ LE + ++ + +W++ + + ++DM ++ T EE I+ I HD
Sbjct: 1 GSTEKQ--LEAIDQLHLEYAKRAAPFNNWMESAMEDLQDMFIVHTIEE-IEGLISAHDQF 57
Query: 135 HKEILRKKPDFTELTDIASSLMGLVGEDEAAGVAD 169
+ + + I + +
Sbjct: 58 KSTLPDADREREAILAIHKEAQRIAESNHIKLSGS 92
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 37.6 bits (87), Expect = 0.009
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIK------TKFETSKLEMGAVADMFDHDY--- 699
K R +LF+K DKN G + ++ G ++ + A
Sbjct: 47 KQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLE 106
Query: 700 NPGLIDWKEFIAA 712
N G D+ EF+
Sbjct: 107 NKGSEDFVEFLEF 119
Score = 34.9 bits (80), Expect = 0.057
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 15/81 (18%)
Query: 641 FLRFMNHKKS-----RLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMF 695
FL F LT +F ++D + + L+ E+F + K E ++ A +F
Sbjct: 116 FLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAV--PKLEAWGAKVEDPAALF 173
Query: 696 -----DHDYNPGLIDWKEFIA 711
+ G + + EF A
Sbjct: 174 KELDKNGT---GSVTFDEFAA 191
Score = 32.2 bits (73), Expect = 0.51
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
Query: 648 KKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWK 707
K++ N G +F++ + + E+ + D D N L+D +
Sbjct: 92 KRAFDKSRTLGSKLENKGSEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGN-MLVDEE 150
Query: 708 EFIAALRPDWEEKKPNTESEKIHDEV 733
EF A+ + + E+
Sbjct: 151 EFKRAVPKLEAWGAKVEDPAALFKEL 176
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 38.1 bits (89), Expect = 0.012
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 746 FRVFQVGEGKYRFGDSQKLRLVR-ILRSTVMVRVGGGWVAL 785
F V G+GK+ + L L LR+TV++ GW A+
Sbjct: 454 FWVLGYGDGKFSAEEESSLNLKNPPLRNTVVIF-PYGWTAI 493
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 37.1 bits (86), Expect = 0.013
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 659 MDKNNDGLIPREDFVDGIIKTK-FETSKLEMGAVADMFDHDYNPGLIDWKEFIAAL---- 713
M + GL +F + + + + V + FD + + G +D+ EFIAA+
Sbjct: 29 MMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKD-GFVDFLEFIAAVNLIM 87
Query: 714 RPDWEEK 720
+ E+K
Sbjct: 88 QEKMEQK 94
Score = 35.9 bits (83), Expect = 0.028
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 644 FMNHKKSRLTD-LFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPG 702
+N K ++ D ++ D N DG + +F+ + E + ++ ++D D N G
Sbjct: 50 GLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGN-G 108
Query: 703 LIDWKEFIAALRPDWEEKKPNTES-EKIHDEV 733
ID E + T S E+ + V
Sbjct: 109 SIDKNELLDMFMAVQALNGQQTLSPEEFINLV 140
Score = 34.8 bits (80), Expect = 0.065
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 651 RLTDLFRKMDKNNDGLIPREDFVDGIIK 678
+ +F K+D NNDG + E+F++G+ K
Sbjct: 136 FINLVFHKIDINNDGELTLEEFINGMAK 163
Score = 29.4 bits (66), Expect = 3.2
Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 18/90 (20%)
Query: 641 FLRFMNHKKS-----RLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGA----V 691
F+ +N +L F+ D + +G I + + +D + + + + +
Sbjct: 79 FIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLD-MFMAVQALNGQQTLSPEEFI 137
Query: 692 ADMF-----DHDYNPGLIDWKEFIAALRPD 716
+F ++D G + +EFI + D
Sbjct: 138 NLVFHKIDINND---GELTLEEFINGMAKD 164
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 36.9 bits (85), Expect = 0.014
Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 24/148 (16%)
Query: 613 QRRLQERLNYLIELEKVKNFSWDD---WRKRFLR-------------------FMNHKKS 650
+ R L +LE NF+ + + F F + S
Sbjct: 29 MTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDAS 88
Query: 651 RLTD-LFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEF 709
LF D G + EDFV + T ++ +++D + + G I+ +E
Sbjct: 89 TYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKD-GYINKEEM 147
Query: 710 IAALRPDWEEKKPNTESEKIHDEVKRLV 737
+ ++ ++ T D ++ V
Sbjct: 148 MDIVKAIYDMMGKYTYPVLKEDTPRQHV 175
Score = 33.0 bits (75), Expect = 0.24
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTK 680
+ + F+KMDKN DG++ ++F++ +
Sbjct: 172 RQHVDVFFQKMDKNKDGIVTLDEFLESCQEDD 203
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 36.7 bits (85), Expect = 0.015
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 650 SRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEF 709
+R+ F +D++ G + + + G S + +FD D+N G I + EF
Sbjct: 51 TRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFN-GHISFYEF 109
Query: 710 IAALR 714
+A +
Sbjct: 110 MAMYK 114
Score = 34.0 bits (78), Expect = 0.12
Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Query: 641 FLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYN 700
F+ + +LF + G + + + + + F ++ + +F
Sbjct: 109 FMAMYKFME-LAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHRLFAR--G 165
Query: 701 PGLIDWKEFIAAL 713
D +IA
Sbjct: 166 MAFCDLNCWIAIC 178
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 36.3 bits (84), Expect = 0.020
Identities = 18/128 (14%), Positives = 35/128 (27%), Gaps = 28/128 (21%)
Query: 641 FLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYN 700
F F D + G + ++ + F S + ++A + +
Sbjct: 95 FKELWAVLN-GWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTN-- 151
Query: 701 PGLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVF-QVGEGKYRFG 759
G I + ++IA V+L FR +G F
Sbjct: 152 -GKITFDDYIAC-----------------------CVKLRALTDSFRRRDTAQQGVVNFP 187
Query: 760 DSQKLRLV 767
++ V
Sbjct: 188 YDDFIQCV 195
Score = 31.7 bits (72), Expect = 0.66
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 640 RFLRFMNHKKSRLTDLFRKMDKNNDGLIP--REDFVDGII 677
++ + LTD FR+ D G++ +DF+ ++
Sbjct: 158 DYIACCVKLR-ALTDSFRRRDTAQQGVVNFPYDDFIQCVM 196
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 34.6 bits (80), Expect = 0.021
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 13/85 (15%)
Query: 639 KRFLRFMNHKK---SRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKL------EMG 689
K+F + K S+L ++FR +D + G I ++ + + + L
Sbjct: 27 KKFFQISGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFL 86
Query: 690 AVADMFDHDYNPGLIDWKEFIAALR 714
A AD D D G I +EF ++
Sbjct: 87 AAADH-DGD---GKIGAEEFQEMVQ 107
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 36.0 bits (83), Expect = 0.023
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 24/138 (17%)
Query: 623 LIELEKVKNFSWDD---WRKRFLR-------------------FMNHKKSRLTD-LFRKM 659
+ +L + +F+ + W K FLR F S+ + +FR
Sbjct: 13 MQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTF 72
Query: 660 DKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRPDWEE 719
D N DG I +F+ + T + ++ M+D D G I E + ++ ++
Sbjct: 73 DANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLD-GNGYISKAEMLEIVQAIYKM 131
Query: 720 KKPNTESEKIHDEVKRLV 737
+ + ++
Sbjct: 132 VSSVMKMPEDESTPEKRT 149
Score = 33.7 bits (77), Expect = 0.14
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIK 678
+ R +FR+MD N DG + E+F+ G
Sbjct: 146 EKRTEKIFRQMDTNRDGKLSLEEFIRGAKS 175
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 35.3 bits (82), Expect = 0.037
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 641 FLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYN 700
F + ++FR D++N G+I + + + + S + FD
Sbjct: 66 FTGVWKYIT-DWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQ-G 123
Query: 701 PGLIDWKEFIAAL 713
G I + +FI
Sbjct: 124 RGQIAFDDFIQGC 136
Score = 31.8 bits (73), Expect = 0.40
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 641 FLRFMNHKKSRLTDLFRKMDKNNDGLI--PREDFV 673
F++ + RLTD+FR+ D + DG I E ++
Sbjct: 132 FIQGCIVLQ-RLTDIFRRYDTDQDGWIQVSYEQYL 165
Score = 31.4 bits (72), Expect = 0.61
Identities = 12/65 (18%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFE-TSKLEMGAVADMFDHDYNPGLIDWK 707
+S L ++F+++DK+ G+I + + + + + + ++ MFD + +++
Sbjct: 6 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENK-AGVNFS 64
Query: 708 EFIAA 712
EF
Sbjct: 65 EFTGV 69
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 35.3 bits (81), Expect = 0.047
Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 24/131 (18%)
Query: 625 ELEKVKNFSWDD---WRKRFLR-------------------FMNHKKSRLTD-LFRKMDK 661
EL+ FS ++ W + FL+ F + +FR D
Sbjct: 23 ELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDS 82
Query: 662 NNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRPDWEEKK 721
N DG + +++V + T + ++ ++D D G I E + + ++
Sbjct: 83 NLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVD-GNGTISKNEVLEIVMAIFKMIT 141
Query: 722 PNTESEKIHDE 732
P DE
Sbjct: 142 PEDVKLLPDDE 152
Score = 33.4 bits (76), Expect = 0.20
Identities = 6/30 (20%), Positives = 17/30 (56%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIK 678
+ R +++ KN+D + ++F++G +
Sbjct: 156 EKRAEKIWKYFGKNDDDKLTEKEFIEGTLA 185
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 36.0 bits (83), Expect = 0.056
Identities = 44/327 (13%), Positives = 107/327 (32%), Gaps = 27/327 (8%)
Query: 231 RGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEI 290
R EE A E+ + +L++ E +Q++ A E+ AE
Sbjct: 852 VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEA 911
Query: 291 DQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEK 350
++ + + A Q+L +I + + ++ +R + L +K
Sbjct: 912 EEMR---VRLAAKKQELEEI--------LHEMEARIEEE--------EERSQQLQAEKKK 952
Query: 351 AMEFHETLQRKGEQGTITALFAKREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQ 410
+ L+ + E+ A K + + A K + + + D K ++
Sbjct: 953 MQQQMLDLEEQLEE--EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010
Query: 411 TFVNSLPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWI 470
V+ L + E + K + E + + ++ + ++
Sbjct: 1011 ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE-KIKRKLEGES 1069
Query: 471 TIIQSRWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDD 530
+ + + E+ + + + +L LQ + LE+ + LE+
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH----- 1124
Query: 531 IPTVERLIEEHKEFMEATSKRQHEVDS 557
I ++ +E K K++ ++
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSE 1151
Score = 30.6 bits (69), Expect = 2.4
Identities = 41/253 (16%), Positives = 92/253 (36%), Gaps = 42/253 (16%)
Query: 20 QEQKFLKKMLADRQHSMSSLFQMGNEVAA-----NADPAERKAIERQLNELMNRFDNLNE 74
+E+ +K+ ++ + + +M +++ N ERK +E ++++L E
Sbjct: 966 EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Query: 75 GASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDAL 134
A + ++ + + +L K E+K + EL E+ ++ E L
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRL--------KKEEKSR-QEL----EKIKRKLEGESSDL 1072
Query: 135 HKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFL 194
H++I + EL + E+E +L+D + ++ L
Sbjct: 1073 HEQIAELQAQIAELKAQLAKK-----EEELQAALARLEDETSQKNNALKKIRELES---- 1123
Query: 195 YNQLILSPRFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMA 254
++D+++ LE N+ +K D LE E + A
Sbjct: 1124 -----------HISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELE----DTLDTTA 1168
Query: 255 TLRDLQDNLNSQE 267
T ++L+ + +
Sbjct: 1169 TQQELRGSDYKDD 1181
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 34.4 bits (79), Expect = 0.068
Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 24/138 (17%)
Query: 623 LIELEKVKNFSWDD---WRKRFLR-------------------FMNHKKSRLTD-LFRKM 659
L +LE NF+ + + F F + S LF
Sbjct: 6 LEQLEAQTNFTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAF 65
Query: 660 DKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRPDWEE 719
D G + EDFV + T ++ +++D + + G I+ +E + ++ ++
Sbjct: 66 DTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKD-GYINKEEMMDIVKAIYDM 124
Query: 720 KKPNTESEKIHDEVKRLV 737
T D ++ V
Sbjct: 125 MGKYTYPVLKEDTPRQHV 142
Score = 32.5 bits (74), Expect = 0.33
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIK 678
+ + F+KMDKN DG++ ++F++ +
Sbjct: 139 RQHVDVFFQKMDKNKDGIVTLDEFLESXQE 168
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 34.5 bits (79), Expect = 0.084
Identities = 11/94 (11%), Positives = 30/94 (31%), Gaps = 14/94 (14%)
Query: 623 LIELEKVKNFSWDD---WRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKT 679
L E + + + + +RF + R ++ + +P E + +
Sbjct: 36 LAEYQDLTFLTKQEILLAHRRFCELLP-------QEQRSVESSLRAQVPFEQILS--LPE 86
Query: 680 KFETSKLEMGAVADMFDHDYNPGLIDWKEFIAAL 713
E + +F + +++F+ L
Sbjct: 87 LKANPFKER--ICRVFSTSPAKDSLSFEDFLDLL 118
Score = 32.5 bits (74), Expect = 0.38
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 655 LFRKMDKNNDGLIPREDFVDGIIKT 679
+ + D + DG I +F I ++
Sbjct: 179 ILEESDIDRDGTINLSEFQHVISRS 203
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 34.6 bits (79), Expect = 0.088
Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 24/143 (16%)
Query: 619 RLNYLIELEKVKNFSWDDWRKRFLRFMNHKKSRLTD-----------------------L 655
+ L +L+ F+ + + + F N + L D L
Sbjct: 75 QPEGLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFL 134
Query: 656 FRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRP 715
F D + +G I EDFV G+ T ++ +++D + + G I +E +A ++
Sbjct: 135 FNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKD-GCITKEEMLAIMKS 193
Query: 716 DWEEKKPNTESEKIHDEVKRLVQ 738
++ +T D V+
Sbjct: 194 IYDMMGRHTYPILREDAPLEHVE 216
Score = 33.5 bits (76), Expect = 0.24
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIK 678
+ F+KMD+N DG++ ++F++ K
Sbjct: 212 LEHVERFFQKMDRNQDGVVTIDEFLETCQK 241
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 34.0 bits (78), Expect = 0.093
Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 24/138 (17%)
Query: 623 LIELEKVKNFSWDD---WRKRFLR-------------------FMNHKKSRLTD-LFRKM 659
L +L + F + W K F + F S + +F
Sbjct: 13 LQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVF 72
Query: 660 DKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRPDWEE 719
D + +G I ++F+ + T ++ ++D D N GLI + E + + ++
Sbjct: 73 DADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNN-GLISYDEMLRIVDAIYKM 131
Query: 720 KKPNTESEKIHDEVKRLV 737
+ + D ++ V
Sbjct: 132 VGSMVKLPEDEDTPEKRV 149
Score = 34.0 bits (78), Expect = 0.11
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIK 678
+ R+ +F MDKN DG + E+F +G +
Sbjct: 146 EKRVNKIFNMMDKNKDGQLTLEEFCEGSKR 175
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 33.7 bits (78), Expect = 0.096
Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 656 FRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRP 715
FR+ DK+ DG I D + + + +++E+ ++ + + G +D+ +F+ + P
Sbjct: 17 FREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLG-GHVDFDDFVELMGP 75
Query: 716 DWEEKKPNTESEK 728
+ + K
Sbjct: 76 KLLAETADMIGVK 88
Score = 29.4 bits (67), Expect = 2.4
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 648 KKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADM------FDHDYNP 701
+ L +L ++++ N G + +DFV+ ++ K +M V ++ FD + +
Sbjct: 45 TEMELIELSQQINMNLGGHVDFDDFVE-LMGPKLLAETADMIGVKELRDAFREFDTNGD- 102
Query: 702 GLIDWKEFIAALRPDWEEKKPNTESEKIHDEV 733
G I E A+R + + + E+I +V
Sbjct: 103 GEISTSELREAMRALLGHQVGHRDIEEIIRDV 134
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 33.5 bits (77), Expect = 0.11
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Query: 641 FLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYN 700
F F D + G + ++ + F + + ++A +
Sbjct: 64 FKELWAVLN-GWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTS-- 120
Query: 701 PGLIDWKEFIAAL 713
G I + ++IA
Sbjct: 121 -GKITFDDYIACC 132
Score = 30.4 bits (69), Expect = 1.3
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 640 RFLRFMNHKKSRLTDLFRKMDKNNDGLIP--REDFVDGII 677
++ + LTD FR+ D G++ +DF+ ++
Sbjct: 127 DYIACCVKLR-ALTDSFRRRDSAQQGMVNFSYDDFIQCVM 165
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 33.7 bits (77), Expect = 0.11
Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 24/138 (17%)
Query: 623 LIELEKVKNFSWDD---WRKRFLR-------------------FMNHKKSRLTD-LFRKM 659
L L++ F + W K FLR F + LF
Sbjct: 13 LTCLKQSTYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVF 72
Query: 660 DKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRPDWEE 719
DK+N+G I E+F+ + T T + ++ +++D +++ G I + E + + ++
Sbjct: 73 DKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHD-GYITFDEMLTIVASVYKM 131
Query: 720 KKPNTESEKIHDEVKRLV 737
+ + V
Sbjct: 132 MGSMVTLNEDEATPEMRV 149
Score = 32.9 bits (75), Expect = 0.22
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIK 678
+ R+ +F+ MDKN DG I ++F +G
Sbjct: 146 EMRVKKIFKLMDKNEDGYITLDEFREGSKV 175
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 33.8 bits (78), Expect = 0.14
Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 641 FLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYN 700
F + S + + FRK D + DG + + ++ + ++ S+ A+ FD
Sbjct: 85 FKDLHHFILS-MREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQ-R 142
Query: 701 PGLIDWKEFIAAL 713
G + + +++
Sbjct: 143 RGSLGFDDYVELS 155
Score = 33.4 bits (77), Expect = 0.16
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 652 LTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIA 711
L + FR +D + G I + + S + M+D +++ G I + EF
Sbjct: 29 LMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHS-GEITFDEFKD 87
Score = 31.1 bits (71), Expect = 0.82
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 641 FLRFMNHKKSRLTDLFRKMDKNNDGLI--PREDFV 673
++ R+ ++F D+ G + + F+
Sbjct: 151 YVELSIFVC-RVRNVFAFYDRERTGQVTFTFDTFI 184
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 32.8 bits (75), Expect = 0.21
Identities = 11/96 (11%), Positives = 31/96 (32%), Gaps = 18/96 (18%)
Query: 623 LIELEKVKNFSWDD---WRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVD--GII 677
L E + + + + +RF + R ++ + +P E + +
Sbjct: 5 LAEYQDLTFLTKQEILLAHRRFCELLP-------QEQRSVESSLRAQVPFEQILSLPELK 57
Query: 678 KTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAAL 713
F+ + +F + +++F+ L
Sbjct: 58 ANPFKER------ICRVFSTSPAKDSLSFEDFLDLL 87
Score = 32.0 bits (73), Expect = 0.49
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 655 LFRKMDKNNDGLIPREDFVDGIIKT 679
+ + D + DG I +F I ++
Sbjct: 148 ILEESDIDRDGTINLSEFQHVISRS 172
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 31.8 bits (73), Expect = 0.21
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 7/82 (8%)
Query: 639 KRFLRFMNHKKSR---LTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMF 695
K F + + +F +D++ G I E+ + L
Sbjct: 28 KSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFL 87
Query: 696 ---DHDYNPGLIDWKEFIAALR 714
D D G I +EF + ++
Sbjct: 88 AAGDTD-GDGKIGVEEFQSLVK 108
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 34.1 bits (77), Expect = 0.22
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 645 MNHKKSR---LTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNP 701
M+ ++ + RK DKN D + ++ D + + + + DH
Sbjct: 3 MDQRQKLQHWIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHS-QT 61
Query: 702 GLIDWKEFIAALR 714
++ +E +
Sbjct: 62 DSLEDEEIETFYK 74
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton,
hemidesmosomes epidermolysis bullosa, structural
protein; 2.05A {Homo sapiens} PDB: 2odu_A
Length = 235
Score = 33.2 bits (75), Expect = 0.24
Identities = 34/209 (16%), Positives = 67/209 (32%), Gaps = 21/209 (10%)
Query: 415 SLPEDDQEARTQLAEHEKFLR-ELAEKEIEKDATIGLAQRILVKSHPDGATV-IKHWITI 472
P +E ++ KF EL KE +K+ + G+ Q + V +
Sbjct: 38 RFPSSFEEIEILWSQFLKFKEMELPAKEADKNRSKGIYQSLEGAVQAGQLKVPPGYHPLD 97
Query: 473 IQSRWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPD-DI 531
++ W ++ +RE++LR+ L+ L ++ +L E L +A D +
Sbjct: 98 VEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQADALLQSDVRL 157
Query: 532 PTVERLIEEHKEFMEATSKRQHEVDSVRASPSREKLNDNLPHYGPRFPPKGSKGAEPQFR 591
++ + E K + + + L D G +
Sbjct: 158 LAAGKVPQRAGEVERDLDKADSMIRLLFNDV--QTLKDGRHPQGEQM------------- 202
Query: 592 NPRCRLLWDTWRNVWLLAWERQRRLQERL 620
R L + E RL+ +
Sbjct: 203 YRRVYRLHKRLVA---IRTEYNLRLKAGV 228
Score = 32.8 bits (74), Expect = 0.32
Identities = 23/179 (12%), Positives = 54/179 (30%), Gaps = 13/179 (7%)
Query: 249 LQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLM 308
LQ + ++ +E Q ++ E + K + S + +
Sbjct: 24 LQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEME-LPAKEADKNRSKGIYQSLEGAV 82
Query: 309 KICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEKAMEFHETLQRKGEQGTIT 368
+ K H D++ W + +RE+ L E+ + + +
Sbjct: 83 QAGQL--KVPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQME---- 136
Query: 369 ALFAKREENLIHAMEKAMEFHETLQQNRDDCKKAD---CNADAVQTFVNSLPEDDQEAR 424
A E ++ + ++ L ++A + D + + L D Q +
Sbjct: 137 ---AGLAEEQLNQADALLQSDVRLLAAGKVPQRAGEVERDLDKADSMIRLLFNDVQTLK 192
Score = 28.5 bits (63), Expect = 7.4
Identities = 8/100 (8%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 56 KAIERQLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDME 115
+E++ +L + + LE + + Q + + L++++ ++
Sbjct: 96 LDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQADALLQSDV 155
Query: 116 LIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSL 155
+ + + +++ + L + +L
Sbjct: 156 ----RLLAAGKVPQRAGEVERDLDKADSMIRLLFNDVQTL 191
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 32.9 bits (75), Expect = 0.25
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGIIK 678
+ R+ +F MDKN DG + ++F +G
Sbjct: 146 EKRVDRIFAMMDKNADGKLTLQEFQEGSKA 175
Score = 32.5 bits (74), Expect = 0.31
Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 24/137 (17%)
Query: 625 ELEKVKNFSWDD---WRKRFLR-------------------FMNHKKSRLTD-LFRKMDK 661
EL + F+ + W K F++ F ++ +F D+
Sbjct: 15 ELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDE 74
Query: 662 NNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRPDWEEKK 721
N DG I +F+ + T T ++ ++D D + G I E + + ++
Sbjct: 75 NKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDND-GYITRNEMLDIVDAIYQMVG 133
Query: 722 PNTESEKIHDEVKRLVQ 738
E + + ++ V
Sbjct: 134 NTVELPEEENTPEKRVD 150
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 33.3 bits (76), Expect = 0.25
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 3/100 (3%)
Query: 639 KRFLRFMNHKKSRLTD-LFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVA-DMFD 696
+ L N K+S D +F D ++G++ E+F + + + ++D
Sbjct: 73 QLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYD 132
Query: 697 HDYNPGLIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRL 736
G I+ +E + E N + I D + +
Sbjct: 133 LKQQ-GFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKT 171
Score = 32.5 bits (74), Expect = 0.36
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 654 DLFRKMDKNNDGLIPREDFVDGIIK 678
F + D +DG I +E++ +++
Sbjct: 170 KTFEEADTKHDGKIDKEEWRSLVLR 194
Score = 28.2 bits (63), Expect = 8.5
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 21/93 (22%)
Query: 641 FLRFMNHKKSRLTD------LFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGA---- 690
F R ++ F+ D G I R++ ++ S + +
Sbjct: 107 FARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQ-MVVATLAESGMNLKDTVIE 165
Query: 691 --VADMF-----DHDYNPGLIDWKEFIAALRPD 716
+ F HD G ID +E+ + +
Sbjct: 166 DIIDKTFEEADTKHD---GKIDKEEWRSLVLRH 195
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 31.5 bits (72), Expect = 0.26
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 7/79 (8%)
Query: 639 KRFLRFMNHKK---SRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADM- 694
K F + + F +D++ G I ++ + L
Sbjct: 28 KAFFAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFL 87
Query: 695 --FDHDYNPGLIDWKEFIA 711
D D G I E+ A
Sbjct: 88 KAGDSD-GDGAIGVDEWAA 105
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 31.4 bits (71), Expect = 0.27
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 622 YLIELEKVKNFSWDDWRKRFLRFMNHKKSRLTD-LFRKMDKNNDGLIPREDFVDGIIKTK 680
+ ELEKV + ++ +R M ++ R+ + + + +D N D L+ E+F+ + +
Sbjct: 46 FTKELEKVYDPKNEEDD---MREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQRKE 102
Query: 681 F 681
F
Sbjct: 103 F 103
Score = 27.2 bits (60), Expect = 6.9
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 15/87 (17%)
Query: 645 MNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKT---------KFETSKLEMGAVADMF 695
++ + F D N+DG++ ++ K + + + M
Sbjct: 15 LDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMR 74
Query: 696 DH-----DYNP-GLIDWKEFIAALRPD 716
+H D N L+ +EF+A+ +
Sbjct: 75 EHVMKNVDTNQDRLVTLEEFLASTQRK 101
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.31
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 19/49 (38%)
Query: 243 EKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEID 291
EK Q+ L+ LQ +L + P AL IKA ++
Sbjct: 18 EK-----QA----LKKLQASLKLYADDSA-P--------ALA-IKATME 47
Score = 31.5 bits (70), Expect = 0.62
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 10/30 (33%)
Query: 512 LAKCESHLLNLEAEPLPDDIP------TVE 535
L K ++ L L A D P T+E
Sbjct: 22 LKKLQASL-KLYA---DDSAPALAIKATME 47
Score = 30.3 bits (67), Expect = 1.2
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 13/42 (30%)
Query: 21 EQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQL 62
E++ LKK+ Q S+ L+ A ++ PA AI+ +
Sbjct: 18 EKQALKKL----QASL-KLY------ADDSAPA--LAIKATM 46
Score = 29.1 bits (64), Expect = 3.3
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 19/44 (43%)
Query: 315 DKPEVKKHIEDLDS-----AWDNVTALFAKREENLIHAMEKAME 353
+K +KK L + A D+ AL A++ ME
Sbjct: 18 EKQALKK----LQASLKLYADDSAPAL----------AIKATME 47
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein,
alpha-helical bundle, complex all- beta folds,
structural protein; 2.10A {Salmonella typhimurium}
Length = 463
Score = 33.3 bits (75), Expect = 0.35
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 21/97 (21%)
Query: 181 LVEASDNLGQYAFLYNQL-----ILSPRFSSVTDIKKKLERLNGLWNEVQKATND----- 230
L A + Y Q+ +L+ + SS++ L + +Q ++
Sbjct: 11 LRGAQNQSSGLTTRYEQMSKIDNLLADKSSSLSG------SLQSFFTSLQTLVSNAEDPA 64
Query: 231 -RGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQ 266
R + +A L +F ++ LRD +N
Sbjct: 65 ARQALIGKAEGLVNQF----KTTDQYLRDQDKQVNIA 97
Score = 31.4 bits (70), Expect = 1.4
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 33 QHSMSSLFQMGNEVAAN-ADPAERKAIERQLNELMNRFDNLNEG-ASQRMDALEQAMAVA 90
S+ S F + +N DPA R+A+ + L+N+F ++ Q +
Sbjct: 43 SGSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSV 102
Query: 91 KQFQDKLTGILD 102
Q + I +
Sbjct: 103 AQINNYAKQIAN 114
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 32.0 bits (73), Expect = 0.38
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 641 FLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYN 700
F N+ K + ++++ D + G I + F ++ + +
Sbjct: 69 FKYLWNNIK-KWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYSD--E 125
Query: 701 PGLIDWKEFIAAL 713
G +D+ FI+ L
Sbjct: 126 GGNMDFDNFISCL 138
Score = 29.3 bits (66), Expect = 3.0
Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 640 RFLRFMNHKKSRLTDLFRKMDKNNDGLIP--REDFV 673
F+ + + F+ +DK+ G I ++++
Sbjct: 133 NFISCLVRLD-AMFRAFKSLDKDGTGQIQVNIQEWL 167
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 30.8 bits (70), Expect = 0.41
Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Query: 625 ELEKVKNFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETS 684
L+++ DD + + K + + + D N +G I + K +
Sbjct: 7 RLDEINKQFLDDPKYSSDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKT 66
Query: 685 KLEMGAVADMFDHDYNPGLIDWKEFIA 711
LE+ + + +F+
Sbjct: 67 HLELKKLIGEVSSGSG-ETFSYPDFLR 92
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 32.5 bits (74), Expect = 0.44
Identities = 15/106 (14%), Positives = 28/106 (26%), Gaps = 18/106 (16%)
Query: 652 LTDLFRKMDKNNDGLIPREDFVD-----GIIKTKFETSKLEMGAVADM---FDHDYNPGL 703
+RK D ++ G I E+ + K M FD + + G
Sbjct: 105 FMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNND-GK 163
Query: 704 IDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVF 749
++ E L + E + F ++
Sbjct: 164 LELTEMARLLPVQENFLLKFQGIKMCGKEF---------NKAFELY 200
Score = 32.2 bits (73), Expect = 0.53
Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 15/107 (14%)
Query: 649 KSRLTDLFRKMDKNNDGLIPREDFVDGI------IKTKFETSKLEMGAVADMFDHDYNPG 702
S+ +++ D + G + ++ + I K EM D + + G
Sbjct: 15 ASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDD-G 73
Query: 703 LIDWKEFIAALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVF 749
I E L + + E + + +R +
Sbjct: 74 KIGIVELAHVLPTEENFLLLFRCQQLKSCE-----EF---MKTWRKY 112
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 30.6 bits (70), Expect = 0.51
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 7/80 (8%)
Query: 641 FLRFMNHKKSRLTDL---FRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMF-- 695
F + K D+ F+ +D + G I E+ + + L
Sbjct: 30 FFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKA 89
Query: 696 -DHDYNPGLIDWKEFIAALR 714
D D G I EF +
Sbjct: 90 ADKD-GDGKIGIDEFETLVH 108
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper
depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A
{Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1a65_A*
Length = 503
Score = 32.7 bits (75), Expect = 0.53
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 759 GDSQKLRLVR-ILRSTVMVRVGGGWVAL 785
S V + R V + V G V +
Sbjct: 411 AGSSTYNFVNPVKRDVVSLGVTGDEVTI 438
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 30.6 bits (70), Expect = 0.59
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 13/80 (16%)
Query: 641 FLRFMNHKKSRLTDL---FRKMDKNNDGLIPREDFVDGIIKTKFETSKL------EMGAV 691
F + L D+ F +D++ G I ++ + L A
Sbjct: 29 FFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLAD 88
Query: 692 ADMFDHDYNPGLIDWKEFIA 711
D D D G+I EF A
Sbjct: 89 GDK-DGD---GMIGVDEFAA 104
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 29.8 bits (68), Expect = 0.62
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 652 LTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIA 711
+ +F++ D N DG I + D ++T TS E+ + D D G ID+ EFI+
Sbjct: 5 MERIFKRFDTNGDGKISLSELTD-ALRTLGSTSADEVQRMMAEIDTD-GDGFIDFNEFIS 62
Query: 712 ALRPDWEEKK 721
+ K
Sbjct: 63 FCNANPGLMK 72
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 29.8 bits (68), Expect = 0.63
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 656 FRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIA 711
F D N G I + + F+ K E+ + + +D + N G I + +F+
Sbjct: 13 FDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGN-GYIGFDDFLD 67
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A
{Saccharomyces cerevisiae}
Length = 956
Score = 32.4 bits (72), Expect = 0.67
Identities = 53/342 (15%), Positives = 105/342 (30%), Gaps = 12/342 (3%)
Query: 16 KAQLQEQKFLKKMLADRQHSMSSLFQMGNEVAANADPAERKAIERQLNELMNRFDNLNEG 75
+ +Q S L + + ++++ E + ++ F L
Sbjct: 540 QLTFASSHNPDTHPTQKQESEGPLQMSQLDTTQLNELLKQQSFEYVQFQTLSNFQILLSV 599
Query: 76 ASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIP----TDEEKIQQRIREH 131
++ + LE + +L LD+ KK K + K ++ I
Sbjct: 600 FNKIFEKLEMKKSSRGYILHQLNLFKITLDERIKKSKIDDADKFIRDNQPIKKEENIVNE 659
Query: 132 DALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDN--LG 189
D + K+P L IA S ED D YG + +D+
Sbjct: 660 DGPNTSRRTKRPKQIRLLSIADSSDESSTEDSNVFKKDGESIEDGAYGENEDENDSEMQE 719
Query: 190 QYAFLYNQLILSPRFSSVTDIKKKLER-LNGLWNEVQKATNDRGRSLEEALALAEKFWSE 248
Q + N+LI S + + D + E +N L +++ + R + +
Sbjct: 720 QLKSMINELINSKISTFLRDQMDQFELKINALLDKILEEKVTRIIEQK-----LGSHTGK 774
Query: 249 LQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLM 308
++ + + N V K +YA + Q +
Sbjct: 775 FSTLKRPQLYMTEEHNVGFDMEVPKKLRTSGKYAETVKDNDDHQAMSTTASPSPEQDQEA 834
Query: 309 KICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHAMEK 350
K + + + K I+ ++ AK +H+M K
Sbjct: 835 KSYTDEQEFMLDKSIDSIEGIILEWFTPNAKYANQCVHSMNK 876
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 31.0 bits (70), Expect = 0.68
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 1/87 (1%)
Query: 625 ELEKVKNFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETS 684
L ++ D + + K + + + + D NN+G I + K +
Sbjct: 25 RLAEINREFLCDQKYSDEENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKT 84
Query: 685 KLEMGAVADMFDHDYNPGLIDWKEFIA 711
LEM + + I +++F+
Sbjct: 85 HLEMKKMISEVTGGVS-DTISYRDFVN 110
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 31.0 bits (71), Expect = 0.70
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 656 FRKMDK-NNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALR 714
FR + G + + + + +K + + D FD N G ID+ F
Sbjct: 19 FRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGN-GDIDFDSFKIIGA 77
Query: 715 PDWEEKKPNTESEK 728
E+ + ++
Sbjct: 78 RFLGEEVNPEQMQQ 91
Score = 27.9 bits (63), Expect = 8.3
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 646 NHKKSRLTDLFRKMDKNNDGLIPREDFVDGII-----KTKFETSKLEMGAVADMFDHDYN 700
KS + L + D +G I + F + E + E+ ++D + N
Sbjct: 46 QQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGN 105
Query: 701 PGLIDWKEFIAALR 714
G I L
Sbjct: 106 -GYISTDVMREILA 118
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 31.0 bits (71), Expect = 0.72
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 14/98 (14%)
Query: 652 LTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIA 711
F D + G I ++ + +K E+ A+ + D D + G ID++EF+
Sbjct: 22 FKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGS-GTIDFEEFLV 80
Query: 712 ALRPDWEEKKPNTESEKIHDEVKRLVQLCTCRQKFRVF 749
+ +E E++ FR+F
Sbjct: 81 MMVRQMKEDAKGKSEEEL-------------ANCFRIF 105
Score = 28.3 bits (64), Expect = 6.4
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 646 NHKKSRLTDLFRKMDKNNDGLIPREDFVD----GIIKTKFETSKLEMGAVADMFDHDYNP 701
N K L + ++D++ G I E+F+ + + S+ E+ +FD + +
Sbjct: 52 NPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNAD- 110
Query: 702 GLIDWKEFIAALR 714
G ID +E LR
Sbjct: 111 GFIDIEELGEILR 123
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 30.2 bits (69), Expect = 0.77
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 641 FLRFMNHKKSR---LTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMF-- 695
F + K + ++F +DK+ G I E+ + L +
Sbjct: 29 FFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAA 88
Query: 696 -DHDYNPGLIDWKEFIA 711
D D + G I EF
Sbjct: 89 GDSD-HDGKIGADEFAK 104
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.87
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 288 AEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENLIHA 347
A+ D+ E E R ++ K E D E + A ++ ++ E
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ---- 130
Query: 348 MEKAMEFHETLQRKGEQGTITALFAKREENLI 379
+EK R ++ A + + + ++I
Sbjct: 131 VEKNKI----NNRIADK----AFYQQPDADII 154
Score = 28.2 bits (62), Expect = 8.6
Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 10/88 (11%)
Query: 333 VTALFAKREENLIHAMEK-AMEFHETLQRKGEQGTITALFAKREENLIHAMEKAMEFHET 391
+ +E ++ K E + LQ +E A + E+++
Sbjct: 74 IAQADRLTQEP--ESIRKWREEQRKRLQELDAASK-----VMEQEWREKAKKDLEEWNQR 126
Query: 392 LQQNRDDCKKADCNADAVQTFVNSLPED 419
+ + K N A + F D
Sbjct: 127 QSEQVEKNKIN--NRIADKAFYQQPDAD 152
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 30.7 bits (69), Expect = 0.89
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 655 LFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVAD----------MFDHDYNP-GL 703
F+ D + + L+ + I E + +++ + D D N G
Sbjct: 73 YFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGY 132
Query: 704 IDWKEFIAALR 714
ID+ EF +L+
Sbjct: 133 IDYAEFAKSLQ 143
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus
lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Length = 521
Score = 31.9 bits (73), Expect = 0.92
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 759 GDSQKLRLVR-ILRSTVMVRVGGGWVAL 785
S V + R V + GG V
Sbjct: 432 PGSSVYNYVNPVRRDVVSIGGGGDNVTF 459
>2g64_A Putative 6-pyruvoyl tetrahydrobiopterin synthase;
tetrahydrobiopterin biosynthesis, phosphate elimination,
PTE synthesis; 1.80A {Caenorhabditis elegans} SCOP:
d.96.1.2
Length = 140
Score = 30.6 bits (69), Expect = 1.0
Identities = 11/62 (17%), Positives = 23/62 (37%)
Query: 498 LQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEATSKRQHEVDS 557
+ DL L +E+ L + L+ + E + T E + E +++ +
Sbjct: 65 VYDLAKLKKEMSLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPSVLYK 124
Query: 558 VR 559
V
Sbjct: 125 VT 126
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 32.0 bits (73), Expect = 1.1
Identities = 39/309 (12%), Positives = 88/309 (28%), Gaps = 51/309 (16%)
Query: 55 RKAIERQLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQD---KLTGILDWLDKSEKKI 111
R R + R A+ + ++ V K++Q + L +
Sbjct: 802 RGHQARCYATFLRRTR-----AAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRN 856
Query: 112 KDMELIPTDEEKIQQRIREHDALHKEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKL 171
K ++ + I Q+ R + + ++ + E KL
Sbjct: 857 KYQMMLREHKSIIIQKHVRGWLARVHYHRTL---KAIVYLQCCYRRMMAKREL----KKL 909
Query: 172 QDTADRYGALVEASDNLGQYAFLYNQLILSPRFSSVTDIKKKLERLNGLWNEV------- 224
+ A + L + +++K++ N + +
Sbjct: 910 KIEARSVERYKKLHIGLEN---------------KIMQLQRKIDEQNKEYKSLLEKMNNL 954
Query: 225 QKATNDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLNSQEPPAVEPKAIQQQQYALK 284
+ + L + E ++ + LQ+ + K + Q Q K
Sbjct: 955 EITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR------KELHQTQTEKK 1008
Query: 285 EIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHIEDLDSAWDNVTALFAKREENL 344
I+ D+ K E EQ + ++ +K E+L+ + + E
Sbjct: 1009 TIEEWADKYKHETEQLVSELKEQNT--------LLKTEKEELNRRIHDQAKEITETMEKK 1060
Query: 345 IHAMEKAME 353
+ K +E
Sbjct: 1061 LVEETKQLE 1069
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 31.1 bits (71), Expect = 1.2
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 421 QEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDG 462
Q A+T L E+ L + + D I + +S D
Sbjct: 165 QGAKTYL---ERTLDTFIKIDGNPDELIKAGVEAISQSLRDE 203
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 29.1 bits (66), Expect = 1.2
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 652 LTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIA 711
+F++ D N DG I + D +KT + E+ + D D + G I + EF
Sbjct: 13 RERIFKRFDTNGDGKISSSELGD-ALKTLGSVTPDEVRRMMAEIDTDGD-GFISFDEFTD 70
Query: 712 ALRPDWEEKK 721
R + K
Sbjct: 71 FARANRGLVK 80
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum
ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Length = 495
Score = 31.5 bits (72), Expect = 1.3
Identities = 5/28 (17%), Positives = 8/28 (28%), Gaps = 1/28 (3%)
Query: 759 GDSQKLRLVR-ILRSTVMVRVGGGWVAL 785
+ I R V + G V +
Sbjct: 412 ASNSTSNYDDPIWRDVVSIGGVGDNVTI 439
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 30.3 bits (68), Expect = 1.4
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 1/90 (1%)
Query: 625 ELEKVKNFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETS 684
LE + DD + + K + + D N +G I + K +
Sbjct: 23 RLEGINKQFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKT 82
Query: 685 KLEMGAVADMFDHDYNPGLIDWKEFIAALR 714
LE+ + + +F+ +
Sbjct: 83 HLELKRLIREVSSGSE-ETFSYSDFLRMML 111
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 30.2 bits (69), Expect = 1.4
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 656 FRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIA 711
F D NNDG + + + FE K E+ + D +D + L+ + +F
Sbjct: 29 FSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSE-GRHLMKYDDFYI 83
Score = 28.3 bits (64), Expect = 6.7
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 648 KKSRLTDLFRKMDKNNDGLIPREDFVDGI-IKTKFETSKLEMGAVADMFDHDYNPGLIDW 706
K + DL + D L+ +DF + K E+ +FD D + G I
Sbjct: 57 PKREILDLIDEYDSEGRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDD-HTGKISI 115
Query: 707 KEFIAALR 714
K +
Sbjct: 116 KNLRRVAK 123
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 29.7 bits (68), Expect = 1.9
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 646 NHKKSRLTDLFRKMDKNNDGLIPREDFVDGI-IKTKFETSKLEMGAVADMFDHDYNPGLI 704
KK + + ++DK G + DF+ + K + +K E+ +FD D G I
Sbjct: 38 EPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDD-ETGKI 96
Query: 705 DWKEFIAALR 714
+K +
Sbjct: 97 SFKNLKRVAK 106
Score = 29.4 bits (67), Expect = 2.4
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 656 FRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRP 715
F D + G I ++ + FE K E+ + D + G +++ +F+ +
Sbjct: 12 FDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGT-GKMNFGDFLTVMTQ 70
Query: 716 DWEEKKPNTE 725
EK E
Sbjct: 71 KMSEKDTKEE 80
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 31.1 bits (69), Expect = 1.9
Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 16/181 (8%)
Query: 25 LKKMLADRQHSMSSLFQMGNEVAA---NADPAERKAIERQLNELMNRFDNLNEGASQRMD 81
+K+ + ++ L + E+ A +A+PA+ +N L + NL+E +R
Sbjct: 515 VKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREG 574
Query: 82 ALEQAMAVAKQFQDKLTGILDWLDK-SEKKIKDMEL---IPTDEEKIQQRIREHDALHKE 137
+V K L +E+ + EL K+Q+ +++ + L K
Sbjct: 575 LENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKN 634
Query: 138 ILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFLYNQ 197
I +F+++ +EA + L++ A Y VE NL + YN+
Sbjct: 635 IQVSHQEFSKMKQS---------NNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNE 685
Query: 198 L 198
L
Sbjct: 686 L 686
Score = 29.9 bits (66), Expect = 4.1
Identities = 23/183 (12%), Positives = 56/183 (30%), Gaps = 16/183 (8%)
Query: 373 KREENLIHAMEKAMEFHETLQQNRDDCKKADCNADAVQTFVNSLPEDDQEARTQLAEHEK 432
EE + + + + + K +T ++ + D + + H
Sbjct: 465 DEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRD 524
Query: 433 FLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQSRWEEVSSWAKQREERLR 492
+ L + E E +A + ++P + +++S + K+RE
Sbjct: 525 TIVLLCKPEPELNA-------AIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLEN 577
Query: 493 NHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEATSKRQ 552
+ D+ S L + L L +R+ ++ + K+Q
Sbjct: 578 DLKSVNFDMTSKFLTALA--QDGVINEEALSVTEL-------DRVYGGLTTKVQESLKKQ 628
Query: 553 HEV 555
+
Sbjct: 629 EGL 631
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 30.6 bits (69), Expect = 2.4
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 229 NDRGRSLEEALALAEKFWSELQSVMATLRDLQDNLN--SQEPPAVEPKAIQQQQYALKEI 286
N R A L K+ S + L ++Q L +E V A+ + Y +EI
Sbjct: 261 NIRVMECRLAAKLLAKYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEI 320
Query: 287 KAEIDQTKPEVEQ 299
+ + E+
Sbjct: 321 CRCLGISLEELRT 333
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 29.5 bits (67), Expect = 2.6
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 646 NHKKSRLTDLFRKMDKNNDGLIPREDFVDGI-IKTKFETSKLEMGAVADMFDHDYNPGLI 704
KK + + ++DK+ G I E+F+ + K S+ E+ +FD D N G I
Sbjct: 60 EPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDD-NSGTI 118
Query: 705 DWKEFIAALR 714
K+ +
Sbjct: 119 TIKDLRRVAK 128
Score = 28.7 bits (65), Expect = 4.8
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 656 FRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIA 711
F D + G I ++ + FE K E+ + D D + G ID++EF+
Sbjct: 34 FDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGS-GTIDFEEFLT 88
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic
resistance, breakage-reunion domain, struct genomics;
HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB:
3ifz_A*
Length = 470
Score = 30.5 bits (70), Expect = 2.6
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 23/89 (25%)
Query: 48 ANADPAERKAIERQLNELMNRFDNLNEGASQRMDALEQAMA-VAKQFQDKLTG-----IL 101
A+ + L+ D ++E QA A + Q + +L I+
Sbjct: 380 ASETVDIAR------AGLIELLD-IDE---------IQAQAILDMQLR-RLAALERQRII 422
Query: 102 DWLDKSEKKIKDMELIPTDEEKIQQRIRE 130
D L K E +I D+E I E+ + +R+
Sbjct: 423 DDLAKIEAEIADLEDILAKPERQRGIVRD 451
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 29.0 bits (66), Expect = 2.9
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 656 FRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIA 711
F D G I +E + + + + D N G I + EF++
Sbjct: 12 FELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGN-GKIQFPEFLS 66
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate
synthase, structural genomics, PSI, protein structure
initiative, nysgrc; 1.90A {Corynebacterium glutamicum}
PDB: 3q2q_A*
Length = 360
Score = 29.9 bits (68), Expect = 3.1
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Query: 47 AANADPAERKAIERQLNELMNRFDNLNE--GASQRMDALEQAMAVAKQFQDKLTGILDWL 104
A D + L + + +N + + A+ ++ D LD L
Sbjct: 272 ALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRL 331
Query: 105 DKSEKK 110
S K
Sbjct: 332 PDSTVK 337
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA
topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus
aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Length = 692
Score = 30.3 bits (69), Expect = 3.1
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 23/89 (25%)
Query: 48 ANADPAERKAIERQLNELMNRFDNLNEGASQRMDALEQAMA-VAKQFQDKLTG-----IL 101
+ L RF L+E +QA A + + + +LTG I
Sbjct: 601 ESDTDKVAM------ESLQQRFK-LSE---------KQAQAILDMRLR-RLTGLERDKIE 643
Query: 102 DWLDKSEKKIKDMELIPTDEEKIQQRIRE 130
++ I ++E I DEE + Q +R+
Sbjct: 644 AEYNELLNYISELETILADEEVLLQLVRD 672
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 30.2 bits (68), Expect = 3.3
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 646 NHKKSRLTDLFRKMDKNNDGLIPREDFVDGI-IKTKFETSKLEMGAVADMFDHDYNPGLI 704
N ++ L D+ ++D + +G I +F+ + K K S+ E+ +FD D N G I
Sbjct: 344 NPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGN-GYI 402
Query: 705 DWKEF 709
E
Sbjct: 403 SAAEL 407
Score = 28.7 bits (64), Expect = 8.4
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 656 FRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRP 715
F DK+ DG I ++ + ++ E+ + + D D N G ID+ EF+ +
Sbjct: 318 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGN-GTIDFPEFLTMMAR 376
Query: 716 DWEEKKPNTE 725
++ E
Sbjct: 377 KMKDTDSEEE 386
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA
polymerase III; HET: DGT; 2.39A {Geobacillus
kaustophilus} PDB: 3f2c_A* 3f2d_A*
Length = 1041
Score = 30.0 bits (68), Expect = 3.5
Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 80 MDALEQAMAVAKQFQDKLT--GILDWLDKSEKKIK 112
M+++ + + +F+ ++ + +W S KKIK
Sbjct: 820 MESVRKGKGLTPEFEAEMRKHDVPEWYIDSCKKIK 854
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 30.0 bits (68), Expect = 4.0
Identities = 24/164 (14%), Positives = 53/164 (32%), Gaps = 5/164 (3%)
Query: 410 QTFVNSLPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHW 469
+ FV E + + EK +E AE + +L++ + +++W
Sbjct: 835 EPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKI-AVLLQKYNRILKKLENW 893
Query: 470 ITIIQSRWEEVSSWAKQREERLRNHLRSLQDLDSLLEELL-EWLAKCESHLLNLEAEPLP 528
T + ++ L++L+ D + L + + S L L
Sbjct: 894 ATTKSVYLGSNETG--DSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYN 951
Query: 529 DDIPTVERLIEEHKEFMEAT-SKRQHEVDSVRASPSREKLNDNL 571
ER + S + +++ A R + ++L
Sbjct: 952 GVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDL 995
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 29.7 bits (66), Expect = 4.4
Identities = 14/88 (15%), Positives = 35/88 (39%)
Query: 264 NSQEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRASGQKLMKICGEPDKPEVKKHI 323
+ + PP K++ Q + K ++ + +++ +A + + + KK +
Sbjct: 458 HQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAV 517
Query: 324 EDLDSAWDNVTALFAKREENLIHAMEKA 351
+ L+ + REEN A+ +
Sbjct: 518 QRLEEQLMKLEVQATDREENKQIALGTS 545
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 28.7 bits (65), Expect = 4.6
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 656 FRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHD-YNPGLIDWKEFIAALR 714
F D+ DG I D + + E+ V D +D++ F+ L+
Sbjct: 16 FELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQ 75
Query: 715 PDWEEKKPNTESE 727
+ + T +
Sbjct: 76 AVAKNRGQGTYED 88
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural
genomics, the center for structural genomics of I
diseases, csgid; 1.87A {Listeria monocytogenes}
Length = 249
Score = 29.0 bits (65), Expect = 4.9
Identities = 16/140 (11%), Positives = 37/140 (26%), Gaps = 16/140 (11%)
Query: 416 LPEDDQEARTQLAEHEKFLRELAEKEIEKDATIGLAQRILVKSHPDGATVIKHWITIIQS 475
L + + L L E ++ AT+ + + K T
Sbjct: 70 LDDPLFDKNVALDMQRHLLIEKKQRIETMLATL---DLTIKNEKGEITMTNKEKFTGFDF 126
Query: 476 RWEEVSSWAKQR-------EERLRNHLRSLQDLDSLLEELLEWLAKCESHLLNLEAEPLP 528
A++ + + + S ++ +L E L + P
Sbjct: 127 SSNPYEEEARKLWGDKVVEKANEKVNNMSEKEQLTLKESFDAEFRH-----LASVRKLTP 181
Query: 529 DDIPTVERLIEEHKEFMEAT 548
+ + I+ ++ T
Sbjct: 182 ES-EEAQLEIDHFFHYLNDT 200
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV,
GRAM-positive bacteria, quinolone target, DNA binding,
DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae}
PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A*
3rad_A* 3rae_A* 3raf_A*
Length = 496
Score = 29.4 bits (67), Expect = 4.9
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 23/89 (25%)
Query: 48 ANADPAERKAIERQLNELMNRFDNLNEGASQRMDALEQAMA-VAKQFQDKLTG-----IL 101
A+ + A+ K L + + E EQA A V Q +LT +
Sbjct: 394 ASENKADAK------ENLKVSY-DFTE---------EQAEAIVTLQLY-RLTNTDVVVLQ 436
Query: 102 DWLDKSEKKIKDMELIPTDEEKIQQRIRE 130
+ + +KI + I DE + +++
Sbjct: 437 EEEAELREKIAMLAAIIGDERTMYNLMKK 465
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 28.1 bits (63), Expect = 5.3
Identities = 9/83 (10%), Positives = 20/83 (24%), Gaps = 2/83 (2%)
Query: 652 LTDLFRKMDKNNDGLIPREDFVDGII-KTKFETSKLEMGAVADMFDHDYNPGLIDWKEFI 710
+ + ED + + K E E+ + LI +
Sbjct: 5 EKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADP-ERHLITAESLR 63
Query: 711 AALRPDWEEKKPNTESEKIHDEV 733
E +++ + E
Sbjct: 64 RNSGILGIEGMSKEDAQGMVREG 86
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor
homology domain, kinesin, motor domain,
microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Length = 298
Score = 29.1 bits (64), Expect = 5.6
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 17/81 (20%)
Query: 626 LEKVKNFS--------WDDWRKRFLRFMNHKKSRLTDLFR---------KMDKNNDGLIP 668
L + KNF+ R+ ++F+ K + + + + D L+
Sbjct: 88 LNQKKNFNLISLSTTPHGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLD 147
Query: 669 REDFVDGIIKTKFETSKLEMG 689
IK KFE + +
Sbjct: 148 YSHNDKDSIKLKFEKHSISLD 168
>2a9g_A Arginine deiminase; arginine degradation pathway, catalyti
mechanism, hydrolase; HET: ARG; 2.30A {Pseudomonas
aeruginosa} SCOP: d.126.1.4 PDB: 1rxx_A 2abr_A* 2aci_A
2aaf_A*
Length = 418
Score = 29.4 bits (65), Expect = 5.8
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 527 LPDDIPTVERLIEEHKEFMEATSKRQHEV 555
L DD+ V + +H +F+ +R +V
Sbjct: 41 LFDDVIWVNQAKRDHFDFVTKMRERGIDV 69
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 28.3 bits (64), Expect = 6.4
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 646 NHKKSRLTDLFRKMDKNNDGLIPREDFVDGI-IKTKFETSKLEMGAVADMFDHDYNPGLI 704
N ++ L D+ ++D + +G I +F+ + K K S+ E+ +FD D N G I
Sbjct: 43 NPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGN-GYI 101
Query: 705 DWKEFIAALR 714
E +
Sbjct: 102 SAAELRHVMT 111
Score = 28.3 bits (64), Expect = 7.4
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 656 FRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIA 711
F DK+ DG I ++ + ++ E+ + + D D N G ID+ EF+
Sbjct: 17 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGN-GTIDFPEFLT 71
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.15A {Planctomyces limnophilus}
Length = 290
Score = 29.0 bits (65), Expect = 6.4
Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 8/66 (12%)
Query: 390 ETLQQNRDDCKKA-----DCNADAVQTFVNSLPEDDQEARTQLAEHEKFLRELAEKEIEK 444
ET + K+ A+ + +PE ++L ++L
Sbjct: 95 ETRASRVAEMKEISDFASWVGCPAIGLHIGFVPESSSPDYSELVRV---TQDLLTHAANH 151
Query: 445 DATIGL 450
+ L
Sbjct: 152 GQAVHL 157
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate
synthase, structural genomics, PSI, PR structure
initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus
brevis} PDB: 3n3d_A
Length = 334
Score = 28.8 bits (65), Expect = 6.7
Identities = 7/63 (11%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 48 ANADPAERKAIERQLNELMNRFDNLNEGASQRMDALEQAMAVAKQFQDKLTGILDWLDKS 107
++A K ++++ + ++ + D + A +A+ + D+ ++ L
Sbjct: 258 SHAPRDFHKLLKKKQAMTLEDIKHVQA-LVAQYDGVGAAKQLAQDYTDRALTLIQQLPVG 316
Query: 108 EKK 110
+
Sbjct: 317 SAQ 319
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 27.9 bits (63), Expect = 7.0
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 656 FRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHD-YNPGLIDWKEFIAALR 714
F D+ D I D + E+ + + N I ++EF+ L+
Sbjct: 14 FLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLPMLQ 73
Query: 715 PDWEEKKPNTESE 727
K T +
Sbjct: 74 AAANNKDQGTFED 86
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA;
2.80A {Staphylococcus aureus}
Length = 514
Score = 29.0 bits (66), Expect = 7.7
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 23/89 (25%)
Query: 48 ANADPAERKAIERQLNELMNRFDNLNEGASQRMDALEQAMA-VAKQFQDKLTG-----IL 101
++ + + K L+ + E EQA A V Q +LT +
Sbjct: 418 SSKNKRDAK------ENLIEVY-EFTE---------EQAEAIVMLQLY-RLTNTDIVALE 460
Query: 102 DWLDKSEKKIKDMELIPTDEEKIQQRIRE 130
+ E IK + I + + + I+E
Sbjct: 461 GEHKELEALIKQLRHILDNHDALLNVIKE 489
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod
phosphodiesterase, HB8; 1.30A {Thermus thermophilus}
SCOP: c.1.18.3 PDB: 1v8e_A
Length = 224
Score = 28.3 bits (64), Expect = 7.8
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 21/89 (23%)
Query: 461 DGATVIKH-----WITIIQSRWEEVSSWAKQREERLRNHLRSLQDLDSLLEELLEWLAKC 515
DG ++H + Q + ++ K +E L LEE+L
Sbjct: 48 DGVFAVRHDPDTPLGPVFQVDYADL----KAQEPDL-----------PRLEEVLALKEAF 92
Query: 516 ESHLLNLEAEPLPDDIP-TVERLIEEHKE 543
+ N+E + P RL +
Sbjct: 93 PQAVFNVELKSFPGLGEEAARRLAALLRG 121
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 26.9 bits (60), Expect = 7.8
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 641 FLRFMNHKKSR-----LTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMF 695
L F + K + + FR DK+ +G I + + + + E+ +
Sbjct: 15 NLYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 74
Query: 696 DHDYNPGLIDWKEFIA 711
D D G ++++EF+
Sbjct: 75 DID-GDGQVNYEEFVQ 89
>2g18_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha
sandwich; 2.50A {Anabaena SP}
Length = 253
Score = 28.7 bits (63), Expect = 8.1
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 499 QDLDSLLEELLEWLAKCESHLLNLEAEPLPDDIPTVERLIEEHKEFMEA 547
+ L+ +L + + + L+L LP ++ VE +E K +E
Sbjct: 19 EQQHPLIRQLADCIEEVWHQHLDLSPYHLPAELGYVEGRLEGEKLTIEN 67
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 27.8 bits (63), Expect = 8.8
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 656 FRKMDKNNDGLIPREDFVDGIIKTKFETSKLEMGAVADMFDHDYNPGLIDWKEFIAALRP 715
F DK+N G I + + S+ E+ + + D D N I++ EF+A +
Sbjct: 17 FALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGN-HAIEFSEFLALMSR 75
Query: 716 DWEEKKPNTE 725
+ E
Sbjct: 76 QLKCNDSEQE 85
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A
{Sphingomonas SP} PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A*
1y3q_A 1j1n_A* 1kwh_A
Length = 502
Score = 28.7 bits (64), Expect = 9.6
Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 18/91 (19%)
Query: 628 KVKNFSWDDWRKRFLRFMNHKKSRLTDLFRKMDKNNDGLIPREDFVDGIIKTKFETSKLE 687
K+K+ + K ++ + + +GLI E F K +
Sbjct: 217 KIKHPFAEVAFKDGIKHVA-----------QW--YKEGLIDPEIFTR---KARSREQTFG 260
Query: 688 MGAVADMFDHDYNPGLIDWKEFIAALRPDWE 718
D + + + ++ P ++
Sbjct: 261 NNIGGMTHDWFASTA--LFNDALSKNIPGFK 289
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural
genomics, PSI-2, protein structure initiative; 1.38A
{Streptomyces coelicolor A3}
Length = 221
Score = 27.9 bits (62), Expect = 9.7
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 483 WAKQREERLRNHLRSLQDLDSLLEELLEWLAK-----CESHLLNLEAEPLPDDIPTVERL 537
Q + + + ++ +++ + C LN AE PD V R
Sbjct: 94 IRAQVTAARGSSPAADGQVRAVARSIVDGIRSPGFRGC--AFLNAVAE-YPDPAHPVHRA 150
Query: 538 IEEHKEFMEAT 548
+ H+++ T
Sbjct: 151 VLAHRQWFLDT 161
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein,
alpha-helical bundle, complex all- beta folds,
structural protein; 1.90A {Salmonella typhimurium}
Length = 248
Score = 28.2 bits (62), Expect = 9.8
Identities = 32/231 (13%), Positives = 68/231 (29%), Gaps = 29/231 (12%)
Query: 76 ASQRMDALEQAMAVAKQFQDKLTGILDWLDKSEKKIKDMELIPTDEEKIQQRIREHDALH 135
A+ + L QA A Q+ T + E + + Q +
Sbjct: 7 AASQAVVLSQAQAQNSQYALARTFATQKVSLEESVLSQV-------TTAIQTAQ------ 53
Query: 136 KEILRKKPDFTELTDIASSLMGLVGEDEAAGVADKLQDTADRYGALVEASDNLGQYAFLY 195
E A + G + +D+ A +A LQ D+ L ++D G+Y F
Sbjct: 54 -----------EKIVYAGN--GTLSDDDRASLATDLQGIRDQLMNLANSTDGNGRYIFAG 100
Query: 196 NQLILSP-RFSSVTDIKKKLERLNGLWNEVQKATNDRGRSLEEALALAEKFWSELQSVMA 254
+ +P ++ + + + G + ++ +
Sbjct: 101 YKTEAAPFDQATGGYHGGEKSVTQQVDSARTMVIGHTGAQIFNSITSNAVPEPDGSDSEK 160
Query: 255 TLRDLQDNLNS--QEPPAVEPKAIQQQQYALKEIKAEIDQTKPEVEQCRAS 303
L + D + + P ++ A+ + + + V RA
Sbjct: 161 NLFVMLDTAIAALKTPVEGNNVEKEKAAAAIDKTNRGLKNSLNNVLTVRAE 211
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.386
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,590,700
Number of extensions: 792776
Number of successful extensions: 3710
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3251
Number of HSP's successfully gapped: 516
Length of query: 801
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 700
Effective length of database: 3,881,772
Effective search space: 2717240400
Effective search space used: 2717240400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.1 bits)