Query psy13768
Match_columns 175
No_of_seqs 173 out of 1080
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 20:00:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03211 ABC transporter G-25; 99.9 2.4E-26 5.2E-31 204.9 17.3 138 29-169 384-524 (659)
2 TIGR00955 3a01204 The Eye Pigm 99.9 3.2E-25 6.9E-30 196.8 18.4 142 27-168 333-477 (617)
3 PLN03140 ABC transporter G fam 99.9 1.4E-25 3.1E-30 213.1 17.0 142 26-167 1184-1331(1470)
4 TIGR00956 3a01205 Pleiotropic 99.9 1.7E-25 3.6E-30 212.5 13.4 143 26-169 393-538 (1394)
5 TIGR00956 3a01205 Pleiotropic 99.9 1.8E-24 3.8E-29 205.5 16.0 133 27-160 1070-1206(1394)
6 KOG0065|consensus 99.9 5.6E-25 1.2E-29 202.0 10.9 161 3-163 1072-1235(1391)
7 KOG0061|consensus 99.9 1.1E-22 2.4E-27 180.1 16.8 139 30-168 333-474 (613)
8 PLN03140 ABC transporter G fam 99.9 1.1E-22 2.3E-27 193.6 15.8 144 25-169 506-655 (1470)
9 KOG0065|consensus 99.8 1.3E-19 2.8E-24 167.0 11.3 150 20-170 425-578 (1391)
10 PF01061 ABC2_membrane: ABC-2 99.4 3.7E-13 8E-18 102.8 2.9 119 35-154 1-120 (210)
11 TIGR03861 phenyl_ABC_PedC alco 96.5 0.12 2.6E-06 41.0 13.1 113 35-151 2-125 (253)
12 TIGR01247 drrB daunorubicin re 96.4 0.06 1.3E-06 42.1 10.8 109 43-154 1-116 (236)
13 PF03379 CcmB: CcmB protein; 96.2 0.24 5.2E-06 38.7 13.0 94 37-142 1-102 (215)
14 TIGR01291 nodJ ABC-2 type tran 95.3 0.83 1.8E-05 36.3 12.9 110 37-151 7-125 (253)
15 TIGR00025 Mtu_efflux ABC trans 90.2 7.3 0.00016 30.2 11.9 103 49-154 2-105 (232)
16 TIGR01190 ccmB heme exporter p 86.9 13 0.00028 29.1 11.5 87 41-139 2-96 (211)
17 PF12679 ABC2_membrane_2: ABC- 84.2 18 0.00039 28.3 12.6 26 39-64 2-27 (277)
18 PRK15066 inner membrane transp 76.2 36 0.00078 26.8 14.8 40 34-73 7-47 (257)
19 PF13829 DUF4191: Domain of un 69.8 54 0.0012 26.0 9.9 47 27-73 3-49 (224)
20 TIGR00439 ftsX putative protei 67.9 14 0.00031 30.4 5.5 44 28-71 4-47 (309)
21 PRK11026 ftsX cell division AB 66.5 21 0.00046 29.4 6.2 44 29-72 5-48 (309)
22 COG2386 CcmB ABC-type transpor 64.4 65 0.0014 25.3 8.0 104 36-152 3-120 (221)
23 PHA03029 hypothetical protein; 63.7 38 0.00082 22.0 6.4 45 117-165 45-89 (92)
24 TIGR03061 pip_yhgE_Nterm YhgE/ 63.2 9.9 0.00022 28.0 3.4 33 43-75 1-36 (164)
25 PF10766 DUF2592: Protein of u 49.9 40 0.00086 19.1 3.5 20 54-73 5-24 (41)
26 TIGR03518 ABC_perm_GldF glidin 48.7 1.3E+02 0.0028 23.6 11.5 95 38-143 2-108 (240)
27 PF12911 OppC_N: N-terminal TM 48.3 56 0.0012 19.2 6.0 44 41-84 5-49 (56)
28 PLN03211 ABC transporter G-25; 46.7 93 0.002 28.5 7.4 28 147-174 466-493 (659)
29 COG1277 NosY ABC-type transpor 43.3 1.3E+02 0.0028 23.6 7.1 38 36-73 3-40 (278)
30 TIGR03733 lanti_perm_MutG lant 42.6 1.7E+02 0.0036 23.0 12.4 24 124-147 84-107 (248)
31 PF07019 Rab5ip: Rab5-interact 40.8 99 0.0021 19.9 5.1 39 54-101 3-41 (81)
32 TIGR01257 rim_protein retinal- 39.7 84 0.0018 33.3 6.4 44 110-154 1702-1747(2272)
33 PF10906 DUF2697: Protein of u 32.7 45 0.00097 21.3 2.2 37 2-38 18-54 (68)
34 KOG2603|consensus 29.9 73 0.0016 26.6 3.6 87 34-122 155-244 (331)
35 PHA02690 hypothetical protein; 28.2 1.5E+02 0.0033 19.5 4.1 15 63-77 54-68 (90)
36 TIGR00955 3a01204 The Eye Pigm 27.0 2.6E+02 0.0057 25.3 7.0 20 155-174 428-447 (617)
37 KOG0059|consensus 26.5 3.6E+02 0.0077 25.8 8.0 45 109-154 319-365 (885)
38 PF07155 ECF-ribofla_trS: ECF- 26.2 2.6E+02 0.0056 20.3 9.2 39 52-90 72-111 (169)
39 PF12698 ABC2_membrane_3: ABC- 25.0 25 0.00055 27.8 0.1 46 109-155 182-229 (344)
40 TIGR02161 napC_nirT periplasmi 25.0 1.2E+02 0.0026 23.1 3.8 18 58-75 16-33 (185)
41 PF12730 ABC2_membrane_4: ABC- 25.0 2.7E+02 0.0059 20.1 12.2 36 114-149 68-111 (232)
42 PF09847 DUF2074: Predicted pe 23.8 4.9E+02 0.011 22.7 13.0 36 32-68 245-280 (449)
43 PRK10617 cytochrome c-type pro 23.2 1.5E+02 0.0033 22.9 4.1 18 58-75 25-42 (200)
44 PF11688 DUF3285: Protein of u 23.1 1.7E+02 0.0036 17.0 3.6 30 45-74 12-43 (45)
45 TIGR01248 drrC daunorubicin re 21.0 3.3E+02 0.0071 19.6 6.3 46 108-154 13-58 (152)
No 1
>PLN03211 ABC transporter G-25; Provisional
Probab=99.94 E-value=2.4e-26 Score=204.89 Aligned_cols=138 Identities=25% Similarity=0.427 Sum_probs=127.9
Q ss_pred CCCCHHHHHHHHHHHhhHHhhhchhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13768 29 QDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILT 108 (175)
Q Consensus 29 ~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~f~~~~~~~~~i~~~~g~lf~~~~~~~~~~~~~~i~~ 108 (175)
+.+||++|+.+|++|+++. +||+.+...|+++.+++|+++|++||+++ ..+++++.|++|+++++.++.+++.+++.
T Consensus 384 ~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~ 460 (659)
T PLN03211 384 SISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFV 460 (659)
T ss_pred cCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999998 89999999999999999999999999985 67899999999999999888888899999
Q ss_pred hHHhHHHHHHHhcCCCcchhHHHHHHHHHhHhHHHHhhhhhhhhhc---ccchhhhhHHHHhhh
Q psy13768 109 FPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVADCGPMLYLEAHF---NRWYSLKAYYVSVNL 169 (175)
Q Consensus 109 ~~~er~v~~RE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y---~~~~~~~~Ff~~~~~ 169 (175)
|+.||++|.||+.+|+|++++|++|++++|+|+.++.+++|++|+| |+.+++..||+..++
T Consensus 461 f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li 524 (659)
T PLN03211 461 FPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLV 524 (659)
T ss_pred HHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 677788777765544
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.94 E-value=3.2e-25 Score=196.77 Aligned_cols=142 Identities=21% Similarity=0.368 Sum_probs=133.4
Q ss_pred ccCCCCHHHHHHHHHHHhhHHhhhchhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13768 27 ILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNI 106 (175)
Q Consensus 27 ~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~f~~~~~~~~~i~~~~g~lf~~~~~~~~~~~~~~i 106 (175)
..|..++++|++.|++|+++..+|||.+...|+++.+++|+++|++|+++++++.+++++.|++|++++..++.+++..+
T Consensus 333 ~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~ 412 (617)
T TIGR00955 333 IGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVI 412 (617)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred hhhHHhHHHHHHHhcCCCcchhHHHHHHHHHhHhHHHHhhhhhhhhhc---ccchhhhhHHHHhh
Q psy13768 107 LTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVADCGPMLYLEAHF---NRWYSLKAYYVSVN 168 (175)
Q Consensus 107 ~~~~~er~v~~RE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y---~~~~~~~~Ff~~~~ 168 (175)
+.++.||++|.||+.+|+|++++|++|++++|+|..++.+++|++|+| ++..++..||...+
T Consensus 413 ~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l 477 (617)
T TIGR00955 413 NVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLF 477 (617)
T ss_pred HHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 56777777766544
No 3
>PLN03140 ABC transporter G family member; Provisional
Probab=99.93 E-value=1.4e-25 Score=213.08 Aligned_cols=142 Identities=13% Similarity=0.176 Sum_probs=129.8
Q ss_pred cccCCCCHHHHHHHHHHHhhHHhhhchhHHHHHHHHHHHHHHHHHHHhcCCCcch---HHHHHHHHHHHHHHHHHHHHHH
Q psy13768 26 QILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYA---SSVLINYNLLFSILIHHVMTSM 102 (175)
Q Consensus 26 ~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~f~~~~~~~---~~i~~~~g~lf~~~~~~~~~~~ 102 (175)
...|++|+++|++.|++|+++..||||.+...|+++++++|+++|++||++|++. .+++++.|++|+.+++.++..+
T Consensus 1184 ~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 1263 (1470)
T PLN03140 1184 ATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNC 1263 (1470)
T ss_pred CccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999999865 5778889999999999888887
Q ss_pred HHHHhhhHHhHHHHHHHhcCCCcchhHHHHHHHHHhHhHHHHhhhhhhhhhc---ccchhhhhHHHHh
Q psy13768 103 MLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVADCGPMLYLEAHF---NRWYSLKAYYVSV 167 (175)
Q Consensus 103 ~~~i~~~~~er~v~~RE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y---~~~~~~~~Ff~~~ 167 (175)
.+.++.+..||++|+||+++|+|++.+|++|++++|+|+.++.+++|.+|+| ++.++...||...
T Consensus 1264 ~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~ 1331 (1470)
T PLN03140 1264 STVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFY 1331 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Confidence 7888999999999999999999999999999999999999999999999999 5656666665443
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.93 E-value=1.7e-25 Score=212.46 Aligned_cols=143 Identities=20% Similarity=0.261 Sum_probs=133.6
Q ss_pred cccCCCCHHHHHHHHHHHhhHHhhhchhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13768 26 QILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLN 105 (175)
Q Consensus 26 ~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~f~~~~~~~~~i~~~~g~lf~~~~~~~~~~~~~~ 105 (175)
.++|..|+++|+++|++|+++..+|||.+...|+++.+++|+++|++|++++.++++++++.|++|+++++.+++++ ..
T Consensus 393 ~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~-~~ 471 (1394)
T TIGR00956 393 SSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSL-LE 471 (1394)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH-HH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999886 55
Q ss_pred HhhhHHhHHHHHHHhcCCCcchhHHHHHHHHHhHhHHHHhhhhhhhhhc---ccchhhhhHHHHhhh
Q psy13768 106 ILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVADCGPMLYLEAHF---NRWYSLKAYYVSVNL 169 (175)
Q Consensus 106 i~~~~~er~v~~RE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y---~~~~~~~~Ff~~~~~ 169 (175)
+..+..||++|.||+++|+|++++|++|++++|+|+.++.+++|.+|+| |+..+++.||+..++
T Consensus 472 i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~ 538 (1394)
T TIGR00956 472 IASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLI 538 (1394)
T ss_pred HHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHH
Confidence 7778889999999999999999999999999999999999999999999 677888888766544
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.92 E-value=1.8e-24 Score=205.54 Aligned_cols=133 Identities=15% Similarity=0.209 Sum_probs=122.5
Q ss_pred ccCCCCHHHHHHHHHHHhhHHhhhchhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13768 27 ILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNI 106 (175)
Q Consensus 27 ~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~f~~~~~~~~~i~~~~g~lf~~~~~~~~~~~~~~i 106 (175)
..|++|+++|+++|++|++++.||||.+...|+++++++|+++|++|+++++++.+++++.|++|+.+++..+. .++.+
T Consensus 1070 ~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~-~~~~~ 1148 (1394)
T TIGR00956 1070 SKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPL-IQQYL 1148 (1394)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999888876655 35778
Q ss_pred hhhHHhHHHH-HHHhcCCCcchhHHHHHHHHHhHhHHHHhhhhhhhhhc---ccchhh
Q psy13768 107 LTFPMEMSIL-IKEHFNRWYSLKAYYVSVNLLDIPVADCGPMLYLEAHF---NRWYSL 160 (175)
Q Consensus 107 ~~~~~er~v~-~RE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y---~~~~~~ 160 (175)
+.|+.||+++ .||+++|+|++.+|++|++++|+|+.++.+++|.+++| ++..++
T Consensus 1149 ~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~ 1206 (1394)
T TIGR00956 1149 PPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNA 1206 (1394)
T ss_pred hhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcc
Confidence 8899999886 89999999999999999999999999999999999999 454443
No 6
>KOG0065|consensus
Probab=99.92 E-value=5.6e-25 Score=202.01 Aligned_cols=161 Identities=14% Similarity=0.159 Sum_probs=139.0
Q ss_pred hhhhcCCCCCccccccccccccccccCCCCHHHHHHHHHHHhhHHhhhchhHHHHHHHHHHHHHHHHHHHhcCCCcchHH
Q psy13768 3 EQAQNDVKPDKKTKKTKHCTYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASS 82 (175)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~f~~~~~~~~~ 82 (175)
+++|+.++++++...........+..|++|++.|++.+++|++..+||+|.+..+|++.+++.|+++|+.||++|.+..|
T Consensus 1072 k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~ 1151 (1391)
T KOG0065|consen 1072 KRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQG 1151 (1391)
T ss_pred HHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHH
Confidence 56788888887777552343455777999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhcCCCcchhHHHHHHHHHhHhHHHHhhhhhhhhhc---ccchh
Q psy13768 83 VLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVADCGPMLYLEAHF---NRWYS 159 (175)
Q Consensus 83 i~~~~g~lf~~~~~~~~~~~~~~i~~~~~er~v~~RE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y---~~~~~ 159 (175)
++|.+|.+|..+++..........+.+..||.+++||+++|+||+.+|.+|++++|+|+.++++.+|.++.| ++.++
T Consensus 1152 lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~ 1231 (1391)
T KOG0065|consen 1152 LQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWT 1231 (1391)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhh
Confidence 999999999998876655543355566789999999999999999999999999999999999999999999 44444
Q ss_pred hhhH
Q psy13768 160 LKAY 163 (175)
Q Consensus 160 ~~~F 163 (175)
+..|
T Consensus 1232 a~~~ 1235 (1391)
T KOG0065|consen 1232 ASKF 1235 (1391)
T ss_pred HHHH
Confidence 4433
No 7
>KOG0061|consensus
Probab=99.90 E-value=1.1e-22 Score=180.05 Aligned_cols=139 Identities=27% Similarity=0.452 Sum_probs=130.8
Q ss_pred CCCHHHHHHHHHHHhhHHhhhchhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13768 30 DTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTF 109 (175)
Q Consensus 30 ~~s~~~Q~~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~f~~~~~~~~~i~~~~g~lf~~~~~~~~~~~~~~i~~~ 109 (175)
.++|+.|++.+++|.+++.+|||.....|+++.+.+|+++|++||+++++..+++++.|++|+.+....+..++++++.|
T Consensus 333 ~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f 412 (613)
T KOG0061|consen 333 SPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVF 412 (613)
T ss_pred CCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999899988899999
Q ss_pred HHhHHHHHHHhcCCCcchhHHHHHHHHHhHhHHHHhhhhhhhhhc---ccchhhhhHHHHhh
Q psy13768 110 PMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVADCGPMLYLEAHF---NRWYSLKAYYVSVN 168 (175)
Q Consensus 110 ~~er~v~~RE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y---~~~~~~~~Ff~~~~ 168 (175)
+.||++|.||+.+|+|+.++|++|+.++|+|+.++.+++|.+|+| ++.+++..|+.+.+
T Consensus 413 ~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l 474 (613)
T KOG0061|consen 413 PQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLL 474 (613)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 55666666655543
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=99.89 E-value=1.1e-22 Score=193.61 Aligned_cols=144 Identities=11% Similarity=0.137 Sum_probs=130.5
Q ss_pred ccccCCCCHHHHHHHHHHHhhHHhhhchhHHHHHHHHHHHHHHHHHHHhcCCCcch---HHHHHHHHHHHHHHHHHHHHH
Q psy13768 25 NQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYA---SSVLINYNLLFSILIHHVMTS 101 (175)
Q Consensus 25 ~~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~f~~~~~~~---~~i~~~~g~lf~~~~~~~~~~ 101 (175)
+.++|..|++.|++.|++|+++..+||+..+..|+++.+++|+++|++|++++.+. .+.+.+.|.+|+++++.++.+
T Consensus 506 ~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~ 585 (1470)
T PLN03140 506 VFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNG 585 (1470)
T ss_pred cCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 34569999999999999999999999999999999999999999999999997543 356678899999988888877
Q ss_pred HHHHHhhhHHhHHHHHHHhcCCCcchhHHHHHHHHHhHhHHHHhhhhhhhhhc---ccchhhhhHHHHhhh
Q psy13768 102 MMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVADCGPMLYLEAHF---NRWYSLKAYYVSVNL 169 (175)
Q Consensus 102 ~~~~i~~~~~er~v~~RE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y---~~~~~~~~Ff~~~~~ 169 (175)
+ ..++.++.||+||.|||++++|++++|++|++++|+|+.++.+++|++|+| |+.++++.||...++
T Consensus 586 ~-~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~ 655 (1470)
T PLN03140 586 F-AELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLL 655 (1470)
T ss_pred H-HHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHH
Confidence 5 678899999999999999999999999999999999999999999999999 788888888877654
No 9
>KOG0065|consensus
Probab=99.81 E-value=1.3e-19 Score=167.04 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=140.5
Q ss_pred cccccccccCCCCHHHHHHHHHHHhhHHhhhchhHHHHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHH
Q psy13768 20 HCTYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSG-EYASSVLINYNLLFSILIHHV 98 (175)
Q Consensus 20 ~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~f~~~~-~~~~~i~~~~g~lf~~~~~~~ 98 (175)
+.++.+.+.|..|+|.|++.|+.|.+....||..++..+..+.+++|+++|++|++.+ .+..+...+.|++|+++++.+
T Consensus 425 ~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~ 504 (1391)
T KOG0065|consen 425 HKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNL 504 (1391)
T ss_pred cchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHH
Confidence 3445678889999999999999999999999999999999999999999999999999 778889999999999999999
Q ss_pred HHHHHHHHhhhHHhHHHHHHHhcCCCcchhHHHHHHHHHhHhHHHHhhhhhhhhhc---ccchhhhhHHHHhhhc
Q psy13768 99 MTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVADCGPMLYLEAHF---NRWYSLKAYYVSVNLL 170 (175)
Q Consensus 99 ~~~~~~~i~~~~~er~v~~RE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y---~~~~~~~~Ff~~~~~~ 170 (175)
+.++ +.+....+.||||+|||...+|++++|.++..++++|..++.+++|.+|.| ++.++++.||..+++.
T Consensus 505 f~~l-aEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~l 578 (1391)
T KOG0065|consen 505 FNGL-AEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFL 578 (1391)
T ss_pred HHhH-HHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 9985 678888999999999999999999999999999999999999999999999 8999999999887664
No 10
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.35 E-value=3.7e-13 Score=102.79 Aligned_cols=119 Identities=21% Similarity=0.302 Sum_probs=105.9
Q ss_pred HHHHHHHHHhhHHhhhchhHH-HHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Q psy13768 35 NQLGVLLSRGLLKVKRDSTLT-HLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEM 113 (175)
Q Consensus 35 ~Q~~~l~~R~~~~~~R~~~~~-~~rl~~~i~~~ll~G~~f~~~~~~~~~i~~~~g~lf~~~~~~~~~~~~~~i~~~~~er 113 (175)
+|++.+++|+++..+|||... ...++..++.++++|.+|.+++++.++. ++.|.++..+...++....+.......|+
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999988544555 77888888777777566556557789999
Q ss_pred HHHHHHhcCCCcchhHHHHHHHHHhHhHHHHhhhhhhhhhc
Q psy13768 114 SILIKEHFNRWYSLKAYYVSVNLLDIPVADCGPMLYLEAHF 154 (175)
Q Consensus 114 ~v~~RE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y 154 (175)
..+.||+.++.|++.+|.+|+.+.+++..++.++++..+.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~ 120 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAY 120 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhh
Confidence 99999999999999999999999999999999999988888
No 11
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=96.52 E-value=0.12 Score=40.96 Aligned_cols=113 Identities=13% Similarity=0.081 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhHHhhhchhHHHHHHHHHHHHHHHHHHHhcCC-Cc------ch---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13768 35 NQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNS-GE------YA---SSVLINYNLLFSILIHHVMTSMML 104 (175)
Q Consensus 35 ~Q~~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~f~~~-~~------~~---~~i~~~~g~lf~~~~~~~~~~~~~ 104 (175)
+++..+.+|+++...|||.....-+++.++.-+++|.+|.+. +. +. ....--.|.+-+.....++. .
T Consensus 2 ~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~---~ 78 (253)
T TIGR03861 2 ICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ---S 78 (253)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH---h
Confidence 678999999999999999999999999999999999988432 11 00 00111123322222211111 1
Q ss_pred HHh-hhHHhHHHHHHHhcCCCcchhHHHHHHHHHhHhHHHHhhhhhhh
Q psy13768 105 NIL-TFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVADCGPMLYLE 151 (175)
Q Consensus 105 ~i~-~~~~er~v~~RE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~ 151 (175)
+.. ...+|+....+=+... .+...+.+++++.+.-..++..++...
T Consensus 79 ~~~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~ 125 (253)
T TIGR03861 79 SLSMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLA 125 (253)
T ss_pred hhHhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1122222333333333 367778999999987776666554433
No 12
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.44 E-value=0.06 Score=42.10 Aligned_cols=109 Identities=14% Similarity=0.014 Sum_probs=63.5
Q ss_pred HhhHHhhhchhHHHHHHHHHHHHHHHHHHHhcCC-Ccc--hHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHH
Q psy13768 43 RGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNS-GEY--ASSVL----INYNLLFSILIHHVMTSMMLNILTFPMEMSI 115 (175)
Q Consensus 43 R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~f~~~-~~~--~~~i~----~~~g~lf~~~~~~~~~~~~~~i~~~~~er~v 115 (175)
|+++...|||.....-+++.++..+++|.++-+. +.+ ..+.. --.|.+.+.....+.... ......+|+.+
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~~--~~~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFSG--ISVIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHhCH
Confidence 7788899999999999999999999999887432 111 11111 112333222222111111 11111222233
Q ss_pred HHHHhcCCCcchhHHHHHHHHHhHhHHHHhhhhhhhhhc
Q psy13768 116 LIKEHFNRWYSLKAYYVSVNLLDIPVADCGPMLYLEAHF 154 (175)
Q Consensus 116 ~~RE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y 154 (175)
+.|=. ..=-+...|+++|.+.+.+..++...+...+.+
T Consensus 79 ~~~~~-~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~ 116 (236)
T TIGR01247 79 LKEIL-VAPASRVEMIVGRILGGSTVAMIQGAIILALSF 116 (236)
T ss_pred HHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222 222356789999999999999888877776666
No 13
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=96.23 E-value=0.24 Score=38.74 Aligned_cols=94 Identities=12% Similarity=0.017 Sum_probs=58.4
Q ss_pred HHHHHHHhhHHhhhchhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH
Q psy13768 37 LGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSIL 116 (175)
Q Consensus 37 ~~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~f~~~~~~~~~i~~~~g~lf~~~~~~~~~~~~~~i~~~~~er~v~ 116 (175)
++.+++|.++.-+|++.....-+...+..-.+.+.. +|.+.+...+..+.++.++... .+... -...|
T Consensus 1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~~a---l~~~~~~l~~~~~gllWi~~lf--a~~l~-------~~r~f 68 (215)
T PF03379_consen 1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFSFA---LGPDPDLLARVAPGLLWIALLF--ASLLG-------LNRSF 68 (215)
T ss_pred CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHhh---cCCchhHHHHHhHHHHHHHHHH--HHHHH-------hhHhH
Confidence 467899999999999988777666666665566555 5555544444443444433322 22111 13457
Q ss_pred HHHhcCCC--------cchhHHHHHHHHHhHhHH
Q psy13768 117 IKEHFNRW--------YSLKAYYVSVNLLDIPVA 142 (175)
Q Consensus 117 ~RE~~~g~--------Y~~~~y~la~~l~elP~~ 142 (175)
.+|+++|. .++...+++|.+...-..
T Consensus 69 ~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~ 102 (215)
T PF03379_consen 69 AREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLL 102 (215)
T ss_pred HHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 88888875 135678899988775443
No 14
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=95.26 E-value=0.83 Score=36.34 Aligned_cols=110 Identities=10% Similarity=0.011 Sum_probs=62.6
Q ss_pred HHHHHHHhhHHhhhc-hhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHH
Q psy13768 37 LGVLLSRGLLKVKRD-STLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSI 115 (175)
Q Consensus 37 ~~~l~~R~~~~~~R~-~~~~~~rl~~~i~~~ll~G~~f~~~~~~~~~i~~~~g~lf~~~~~~~~~~~~~~i~~~~~er~v 115 (175)
...+.+|+++..+|+ |......+++.++.-+++|..+-+...+..+ .+ -.-|.......+..+..+. +..--..
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g-~~--y~~f~~pg~l~~~~~~~~~--~~~~~~~ 81 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG-VS--YAAFLAAGMVATSAMTAST--FETIYAT 81 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CC--HHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 456779999999999 9999999999998888888886432111111 11 1122222222222221111 1111134
Q ss_pred HHHHhcCCCc--------chhHHHHHHHHHhHhHHHHhhhhhhh
Q psy13768 116 LIKEHFNRWY--------SLKAYYVSVNLLDIPVADCGPMLYLE 151 (175)
Q Consensus 116 ~~RE~~~g~Y--------~~~~y~la~~l~elP~~~i~~~if~~ 151 (175)
+.|||++|.+ +...+.+||++.+.-..++..++...
T Consensus 82 ~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~ 125 (253)
T TIGR01291 82 FARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGV 125 (253)
T ss_pred HHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555542 56788999998886655555544333
No 15
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=90.19 E-value=7.3 Score=30.23 Aligned_cols=103 Identities=13% Similarity=-0.014 Sum_probs=56.6
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhcCCCcch
Q psy13768 49 KRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLI-NYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSL 127 (175)
Q Consensus 49 ~R~~~~~~~rl~~~i~~~ll~G~~f~~~~~~~~~i~~-~~g~lf~~~~~~~~~~~~~~i~~~~~er~v~~RE~~~g~Y~~ 127 (175)
+|||.....-+.+.+++-++.+.++-+. .+.++.+. ..|.+-......+.... +.......|...+.|=+.... +.
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~er~~G~l~rl~~~P~-~~ 78 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGS-VTHNRGATFIPVLMALAAISTAFTGQ-AIAVARDRRYGALKRLGATPL-PR 78 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCc-cCCcchhHhhHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHhcCCC-cH
Confidence 6999999999999998888888877542 11112211 12222212211111111 111112223334444444433 67
Q ss_pred hHHHHHHHHHhHhHHHHhhhhhhhhhc
Q psy13768 128 KAYYVSVNLLDIPVADCGPMLYLEAHF 154 (175)
Q Consensus 128 ~~y~la~~l~elP~~~i~~~if~~i~Y 154 (175)
..|.++|.+...+..++...++..+.+
T Consensus 79 ~~~l~g~~~~~~~~~~~~~~~~~~~~~ 105 (232)
T TIGR00025 79 LGILAGRSLAVVARVFLQTLILLVIGF 105 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999988888887777665554443
No 16
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=86.91 E-value=13 Score=29.06 Aligned_cols=87 Identities=9% Similarity=-0.070 Sum_probs=54.2
Q ss_pred HHHhhHHhhhchhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHh
Q psy13768 41 LSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEH 120 (175)
Q Consensus 41 ~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~f~~~~~~~~~i~~~~g~lf~~~~~~~~~~~~~~i~~~~~er~v~~RE~ 120 (175)
++|.++.-+|++.....-+...+.+..++... .|.|.+...+....++.++... .++. .-...|.+|+
T Consensus 2 ~~kDl~l~~r~~~~~~~~llF~l~vi~lf~la---~gp~~~~l~~~apgilWva~lf--a~ll-------~l~rlF~~d~ 69 (211)
T TIGR01190 2 IRRDLRLAFRAGGGILNPLWFFLIVVTLFPFG---VGPELKLLSRIAPGIVWVGALL--SSLL-------SLDRLFRDDF 69 (211)
T ss_pred cHHHHHHHHcccchHHHHHHHHHHHHHHHHhh---cCCcHHHHHHHHHHHHHHHHHH--HHHH-------HhhHHHHHHH
Confidence 57999999999887766665555555555444 5666555555555555444422 2211 1135788888
Q ss_pred cCCC--------cchhHHHHHHHHHhH
Q psy13768 121 FNRW--------YSLKAYYVSVNLLDI 139 (175)
Q Consensus 121 ~~g~--------Y~~~~y~la~~l~el 139 (175)
++|. .+....+++|.++..
T Consensus 70 e~g~Le~lll~p~~~~~i~l~K~la~w 96 (211)
T TIGR01190 70 EDGSLDLLMLSPTPLELTVLAKVLAHW 96 (211)
T ss_pred hCCcHHHHHhCCCChHHHHHHHHHHHH
Confidence 8884 356778888887653
No 17
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=84.22 E-value=18 Score=28.32 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=20.2
Q ss_pred HHHHHhhHHhhhchhHHHHHHHHHHH
Q psy13768 39 VLLSRGLLKVKRDSTLTHLRIIVNIF 64 (175)
Q Consensus 39 ~l~~R~~~~~~R~~~~~~~rl~~~i~ 64 (175)
.+.+++++..+|++..+..-.+..++
T Consensus 2 ~i~~~E~~~~~r~~~~~~~~~~~~~~ 27 (277)
T PF12679_consen 2 AIAKKEFRELFRSRRFWILLIIFLLL 27 (277)
T ss_pred hhHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 57899999999999887666555444
No 18
>PRK15066 inner membrane transport permease; Provisional
Probab=76.22 E-value=36 Score=26.81 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhHHhhhchhHH-HHHHHHHHHHHHHHHHHh
Q psy13768 34 SNQLGVLLSRGLLKVKRDSTLT-HLRIIVNIFVALMLGVLF 73 (175)
Q Consensus 34 ~~Q~~~l~~R~~~~~~R~~~~~-~~rl~~~i~~~ll~G~~f 73 (175)
++-+..+.+|+.+...||+... ..-+++.++..++.|..+
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~ 47 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLI 47 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6678899999999999998553 334445556666677665
No 19
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=69.76 E-value=54 Score=25.96 Aligned_cols=47 Identities=15% Similarity=0.057 Sum_probs=29.0
Q ss_pred ccCCCCHHHHHHHHHHHhhHHhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy13768 27 ILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLF 73 (175)
Q Consensus 27 ~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~f 73 (175)
.+....+..|++..++=+-+..-+=+.....-++..+.+++++|+++
T Consensus 3 k~k~~~~~~Qi~q~y~~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~ 49 (224)
T PF13829_consen 3 KPKKPGRRKQIWQAYKMTRKEDPKLPWLMLGAFLGPIAVFVLIGLLF 49 (224)
T ss_pred ccccchHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667888888876654433333333344445556677788888885
No 20
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=67.87 E-value=14 Score=30.43 Aligned_cols=44 Identities=18% Similarity=0.017 Sum_probs=33.2
Q ss_pred cCCCCHHHHHHHHHHHhhHHhhhchhHHHHHHHHHHHHHHHHHH
Q psy13768 28 LQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGV 71 (175)
Q Consensus 28 ~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~ 71 (175)
-|+.-|..|-+..+++.+++.+|||.....-++...+.=++.|.
T Consensus 4 ~~~~~~~~~h~~~~~~~~~~l~r~~~~s~~si~ti~i~L~l~g~ 47 (309)
T TIGR00439 4 HYASVFSLQVEYARSALKQDLRQQPFGTLLTLIVIAVSLTLPLV 47 (309)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 47778999999999999999999999887765544333333343
No 21
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=66.45 E-value=21 Score=29.42 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHhhHHhhhchhHHHHHHHHHHHHHHHHHHH
Q psy13768 29 QDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVL 72 (175)
Q Consensus 29 ~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~ 72 (175)
+..+|.+|=...+++.++..+|||.....-+....+.=+++|..
T Consensus 5 ~~~~~~~~h~~~~~~~~~~l~rn~~~s~~si~~i~i~L~l~g~~ 48 (309)
T PRK11026 5 FTNGFNEQVRYAWRGALADLKRKPLATLLTVMVIAISLTLPSVC 48 (309)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999998887665444444444443
No 22
>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=64.40 E-value=65 Score=25.32 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=58.6
Q ss_pred HHHHHHHHhhHHhhhchhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHhHH
Q psy13768 36 QLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINY-NLLFSILIHHVMTSMMLNILTFPMEMS 114 (175)
Q Consensus 36 Q~~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~f~~~~~~~~~i~~~~-g~lf~~~~~~~~~~~~~~i~~~~~er~ 114 (175)
-+..+++|..|.-+|.+.....-++.....-.+++. .+|.|.+-..... |.+.......+..+ - -.
T Consensus 3 ~~~~l~~rdLrl~~R~~~~~~~~l~F~l~Vi~lfp~---~vGpd~~~la~iaPgilWia~lLA~lL~---------l-~r 69 (221)
T COG2386 3 AFLALFKRDLRLEFRAKAGILNPLLFFLLVITLFPL---AVGPDPQLLARIAPGILWIAALLASLLG---------L-ER 69 (221)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcc---ccCCchhHHHHhcchHHHHHHHHHHHHh---------H-HH
Confidence 357889999999999988776666555554444443 3566554443333 34443322222111 2 34
Q ss_pred HHHHHhcCCCcc--------hhHHHHHHHHHh-----HhHHHHhhhhhhhh
Q psy13768 115 ILIKEHFNRWYS--------LKAYYVSVNLLD-----IPVADCGPMLYLEA 152 (175)
Q Consensus 115 v~~RE~~~g~Y~--------~~~y~la~~l~e-----lP~~~i~~~if~~i 152 (175)
.|.+|+++|.-. ...-+++|+++. +|..+..|+.....
T Consensus 70 lF~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll 120 (221)
T COG2386 70 LFRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLL 120 (221)
T ss_pred HHHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 789999999421 223445555444 46666655554433
No 23
>PHA03029 hypothetical protein; Provisional
Probab=63.73 E-value=38 Score=22.03 Aligned_cols=45 Identities=16% Similarity=0.329 Sum_probs=31.1
Q ss_pred HHHhcCCCcchhHHHHHHHHHhHhHHHHhhhhhhhhhcccchhhhhHHH
Q psy13768 117 IKEHFNRWYSLKAYYVSVNLLDIPVADCGPMLYLEAHFNRWYSLKAYYV 165 (175)
Q Consensus 117 ~RE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y~~~~~~~~Ff~ 165 (175)
.|.|+.|+| +++--..--+|+.+..++-|..+.|-+.+.+..||+
T Consensus 45 irsrrkg~y----wflnf~fwllp~al~a~fyffsiw~imnpqak~ywf 89 (92)
T PHA03029 45 IRSRRKGLY----WFLNFLFWLLPFALAAAFYFFSIWFIMNPQAKIYWF 89 (92)
T ss_pred HHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHhhheecccceeecC
Confidence 367777776 333334445799999888898888866666666653
No 24
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=63.24 E-value=9.9 Score=28.01 Aligned_cols=33 Identities=9% Similarity=0.206 Sum_probs=23.7
Q ss_pred HhhHHhhhchhHHHH---HHHHHHHHHHHHHHHhcC
Q psy13768 43 RGLLKVKRDSTLTHL---RIIVNIFVALMLGVLFQN 75 (175)
Q Consensus 43 R~~~~~~R~~~~~~~---rl~~~i~~~ll~G~~f~~ 75 (175)
|.++..+|||..+.. -++..+++++++|..|++
T Consensus 1 ~E~~~~~r~~~~~~~li~~~~~P~i~~~~~~~a~~~ 36 (164)
T TIGR03061 1 SELKRLRKNKLLRIALIAIMLIPLLYGGLFLWAFWD 36 (164)
T ss_pred ChHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 567889999976644 355667777788877764
No 25
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=49.90 E-value=40 Score=19.07 Aligned_cols=20 Identities=35% Similarity=0.738 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy13768 54 LTHLRIIVNIFVALMLGVLF 73 (175)
Q Consensus 54 ~~~~rl~~~i~~~ll~G~~f 73 (175)
...+-+...+++++++|++|
T Consensus 5 l~fa~iMVPVvma~ilglIy 24 (41)
T PF10766_consen 5 LAFAVIMVPVVMALILGLIY 24 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888887
No 26
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=48.71 E-value=1.3e+02 Score=23.60 Aligned_cols=95 Identities=11% Similarity=-0.012 Sum_probs=52.0
Q ss_pred HHHHHHhhHHhhhchhHHHHHHHHHHHHHHHHHHHhcCC----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Q psy13768 38 GVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNS----GEYASSVLINYNLLFSILIHHVMTSMMLNILTFPMEM 113 (175)
Q Consensus 38 ~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~f~~~----~~~~~~i~~~~g~lf~~~~~~~~~~~~~~i~~~~~er 113 (175)
+.+.+|+++...|.|..+..-.+..++.|+.. ..+.+. +.+..+...-.+..-+ .+..+.+.+ -.
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~-----~~~~~~p~l-----~~ 70 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPW-----VFLFLIPAI-----TM 70 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHH-----HHHHHHHHH-----HH
Confidence 46889999999999999987777777767442 222111 1111222221111111 111111111 23
Q ss_pred HHHHHHhcCCCc--------chhHHHHHHHHHhHhHHH
Q psy13768 114 SILIKEHFNRWY--------SLKAYYVSVNLLDIPVAD 143 (175)
Q Consensus 114 ~v~~RE~~~g~Y--------~~~~y~la~~l~elP~~~ 143 (175)
..+.+||++|.. +.....++|.+.-.-..+
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~ 108 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVI 108 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 566788888863 346778888887754433
No 27
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=48.33 E-value=56 Score=19.21 Aligned_cols=44 Identities=9% Similarity=0.080 Sum_probs=24.4
Q ss_pred HHHhhHHhhhchhHHHHHHHHHH-HHHHHHHHHhcCCCcchHHHH
Q psy13768 41 LSRGLLKVKRDSTLTHLRIIVNI-FVALMLGVLFQNSGEYASSVL 84 (175)
Q Consensus 41 ~~R~~~~~~R~~~~~~~rl~~~i-~~~ll~G~~f~~~~~~~~~i~ 84 (175)
.++.++.+.|||.....-++..+ ++..++|-.+..-+.++.+..
T Consensus 5 ~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~~~~~~d~~ 49 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAVIGLIILLILVLLAIFAPFISPYDPNQQDLS 49 (56)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHH
Confidence 34566777888887776655444 334445545544443443433
No 28
>PLN03211 ABC transporter G-25; Provisional
Probab=46.71 E-value=93 Score=28.53 Aligned_cols=28 Identities=18% Similarity=0.558 Sum_probs=22.5
Q ss_pred hhhhhhhcccchhhhhHHHHhhhccccC
Q psy13768 147 MLYLEAHFNRWYSLKAYYVSVNLLDIPV 174 (175)
Q Consensus 147 ~if~~i~Y~~~~~~~~Ff~~~~~~~~~~ 174 (175)
.+|.-..-+.+|++.+||++.++.++|+
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~ 493 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPM 493 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHH
Confidence 4444444488999999999999999995
No 29
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=43.30 E-value=1.3e+02 Score=23.62 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=29.9
Q ss_pred HHHHHHHHhhHHhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy13768 36 QLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLF 73 (175)
Q Consensus 36 Q~~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~f 73 (175)
+...+.+++++...|+|..+..-....+..++.....+
T Consensus 3 ~~~~i~~~e~~~~~~s~~~~~~~~~~~l~~~i~~~~~~ 40 (278)
T COG1277 3 NILVIAQKEFQKYLRSKRFYILLAIFLLFAGIVLLLAL 40 (278)
T ss_pred hhhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999888887766666666666665
No 30
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=42.55 E-value=1.7e+02 Score=23.01 Aligned_cols=24 Identities=21% Similarity=-0.016 Sum_probs=15.8
Q ss_pred CcchhHHHHHHHHHhHhHHHHhhh
Q psy13768 124 WYSLKAYYVSVNLLDIPVADCGPM 147 (175)
Q Consensus 124 ~Y~~~~y~la~~l~elP~~~i~~~ 147 (175)
-.+...+++||.+.-.-..++..+
T Consensus 84 p~s~~~~~~aK~l~~~~~~~is~~ 107 (248)
T TIGR03733 84 TKSKYKAYLSKLLLLLLCGFFSTF 107 (248)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHH
Confidence 345677899998877655555433
No 31
>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)
Probab=40.76 E-value=99 Score=19.91 Aligned_cols=39 Identities=18% Similarity=0.381 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy13768 54 LTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTS 101 (175)
Q Consensus 54 ~~~~rl~~~i~~~ll~G~~f~~~~~~~~~i~~~~g~lf~~~~~~~~~~ 101 (175)
....|-..+++.|+..|.+ ++.+..|.+++.........
T Consensus 3 i~~~r~~~a~~~Gi~aGIL---------gLtg~~Gf~~f~~~~~~~s~ 41 (81)
T PF07019_consen 3 IYWCRQIIALLAGIAAGIL---------GLTGLYGFIFFFLSSFLVSL 41 (81)
T ss_pred HHHHHHHHHHHHHHHhhhc---------ccccHHHHHHHHHHHHHHHH
Confidence 3566777888888888877 45566788877766554443
No 32
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=39.67 E-value=84 Score=33.26 Aligned_cols=44 Identities=18% Similarity=0.088 Sum_probs=31.7
Q ss_pred HHhHHHHHH--HhcCCCcchhHHHHHHHHHhHhHHHHhhhhhhhhhc
Q psy13768 110 PMEMSILIK--EHFNRWYSLKAYYVSVNLLDIPVADCGPMLYLEAHF 154 (175)
Q Consensus 110 ~~er~v~~R--E~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y 154 (175)
..||.-=.| +.-+|. ++.+||++..+-|+...++..++..++++
T Consensus 1702 V~ER~skaK~lQ~vSGv-~~~~YWls~fl~D~~~y~i~~~~~i~i~~ 1747 (2272)
T TIGR01257 1702 IQERVNKAKHLQFISGV-SPTTYWLTNFLWDIMNYAVSAGLVVGIFI 1747 (2272)
T ss_pred ehHHhhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445543333 455666 78899999999999888887777766665
No 33
>PF10906 DUF2697: Protein of unknown function (DUF2697); InterPro: IPR020301 This entry contains proteins with no known function.
Probab=32.74 E-value=45 Score=21.28 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=22.7
Q ss_pred hhhhhcCCCCCccccccccccccccccCCCCHHHHHH
Q psy13768 2 VEQAQNDVKPDKKTKKTKHCTYSNQILQDTSYSNQLG 38 (175)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~ 38 (175)
||+|-++|..|+..+.........+..|.++-.++++
T Consensus 18 VR~Ih~kVN~I~~~~~~~~~~~~~~~~y~Pt~~~k~~ 54 (68)
T PF10906_consen 18 VRRIHAKVNGIKYGPNPHESTSQSEFLYKPTRLQKFN 54 (68)
T ss_pred HHHHHHHHhCCCCCCCCcccccccccccCCchHHHHH
Confidence 6778788888876553333323345557777666653
No 34
>KOG2603|consensus
Probab=29.94 E-value=73 Score=26.59 Aligned_cols=87 Identities=14% Similarity=0.088 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhHHhhh---chhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy13768 34 SNQLGVLLSRGLLKVKR---DSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSILIHHVMTSMMLNILTFP 110 (175)
Q Consensus 34 ~~Q~~~l~~R~~~~~~R---~~~~~~~rl~~~i~~~ll~G~~f~~~~~~~~~i~~~~g~lf~~~~~~~~~~~~~~i~~~~ 110 (175)
..|..--..+.-+...| .|..+-..++..++++++.|++|....+-.. +.++.+..+.++....++. .+..-...
T Consensus 155 Ae~iaqfv~~~tkv~v~si~rPp~~s~~iivaliva~i~~li~~k~~~l~f-l~~r~~w~~lsl~i~f~~i-SG~M~n~I 232 (331)
T KOG2603|consen 155 AEQIAQFVADRTKVNVRSIQRPPNYSKPIIVALIVALIGGLIYKKRSNLTF-LSNRTIWAVLSLFIVFFMI-SGQMWNHI 232 (331)
T ss_pred HHHHHHHHHHhhhheeeeeecCCcccchhHHHHHHHHHHHHHHHHhccchh-hhhHHHHHHHHHhheeeee-chhHHHHh
Confidence 55555544444444333 2444444488899999999999976544332 6666655554443322222 24444555
Q ss_pred HhHHHHHHHhcC
Q psy13768 111 MEMSILIKEHFN 122 (175)
Q Consensus 111 ~er~v~~RE~~~ 122 (175)
..-|...|..+.
T Consensus 233 R~~P~~~~dp~~ 244 (331)
T KOG2603|consen 233 RGPPYAIKDPHT 244 (331)
T ss_pred cCCcceeeCCCC
Confidence 666667666443
No 35
>PHA02690 hypothetical protein; Provisional
Probab=28.23 E-value=1.5e+02 Score=19.48 Aligned_cols=15 Identities=13% Similarity=0.634 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhcCCC
Q psy13768 63 IFVALMLGVLFQNSG 77 (175)
Q Consensus 63 i~~~ll~G~~f~~~~ 77 (175)
+++-+++-.++.|.|
T Consensus 54 V~myiv~Rl~~RN~g 68 (90)
T PHA02690 54 VVMYIVFRLIWRNPG 68 (90)
T ss_pred HHHHHHHHHHHcChh
Confidence 345555555555543
No 36
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=27.02 E-value=2.6e+02 Score=25.26 Aligned_cols=20 Identities=20% Similarity=0.703 Sum_probs=17.6
Q ss_pred ccchhhhhHHHHhhhccccC
Q psy13768 155 NRWYSLKAYYVSVNLLDIPV 174 (175)
Q Consensus 155 ~~~~~~~~Ff~~~~~~~~~~ 174 (175)
...|+..+|+++.++.++|.
T Consensus 428 ~~~Y~~~~y~la~~l~~lp~ 447 (617)
T TIGR00955 428 SGLYRVSAYFLAKTIAELPL 447 (617)
T ss_pred CCccCHHHHHHHHHHHHHHH
Confidence 67889999999999999885
No 37
>KOG0059|consensus
Probab=26.50 E-value=3.6e+02 Score=25.78 Aligned_cols=45 Identities=11% Similarity=0.086 Sum_probs=31.2
Q ss_pred hHHhHHHHHH--HhcCCCcchhHHHHHHHHHhHhHHHHhhhhhhhhhc
Q psy13768 109 FPMEMSILIK--EHFNRWYSLKAYYVSVNLLDIPVADCGPMLYLEAHF 154 (175)
Q Consensus 109 ~~~er~v~~R--E~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y 154 (175)
...||.-=.| +.-+|+ ++++|+++..+.|+...++..++...+.+
T Consensus 319 li~e~~~~~~~~~~i~G~-~~~~yw~~~~~~d~~~~~l~~~~~~~~~~ 365 (885)
T KOG0059|consen 319 LILERQQRLRHQQLIAGL-SPSTYWLFALVWDLLLYLLILLILLIFVL 365 (885)
T ss_pred HHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445554444 355666 67899999999999888777776555554
No 38
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=26.17 E-value=2.6e+02 Score=20.31 Aligned_cols=39 Identities=10% Similarity=0.271 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCcch-HHHHHHHHHH
Q psy13768 52 STLTHLRIIVNIFVALMLGVLFQNSGEYA-SSVLINYNLL 90 (175)
Q Consensus 52 ~~~~~~rl~~~i~~~ll~G~~f~~~~~~~-~~i~~~~g~l 90 (175)
+.......+...++|++.|..+++.+.+. ++..+..+.+
T Consensus 72 ~~~~~~~~i~~~~~g~i~g~~~~~~~~~~~~~~~~~~~~~ 111 (169)
T PF07155_consen 72 GPWAPFTMISKGLMGFIAGLIFRKKKKKKKSKSFNILAII 111 (169)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 33344557888899999999998876543 2444444433
No 39
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=25.00 E-value=25 Score=27.81 Aligned_cols=46 Identities=15% Similarity=0.018 Sum_probs=0.0
Q ss_pred hHHhHH--HHHHHhcCCCcchhHHHHHHHHHhHhHHHHhhhhhhhhhcc
Q psy13768 109 FPMEMS--ILIKEHFNRWYSLKAYYVSVNLLDIPVADCGPMLYLEAHFN 155 (175)
Q Consensus 109 ~~~er~--v~~RE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y~ 155 (175)
..+||. +..|-+..|. +...|++++.+......++..++...+.++
T Consensus 182 i~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i~~~ 229 (344)
T PF12698_consen 182 IVEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIIIIFG 229 (344)
T ss_dssp -------------------------------------------------
T ss_pred hhhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 344443 4444445554 788999999999998888887777766554
No 40
>TIGR02161 napC_nirT periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family. Nearly every member of this subfamily is NapC, a predicted membrane-anchored four-heme c-type cytochrome that forms one component of the periplasmic nitrate reductase along with NapA, NapB, NapD, NapE, and NapF subunits. A single known exception at this time is NirT, which is instead a component of a nitrite reductase. This family excludes TorC subunits of trimethylamine N-oxide (TMAO) reductases.
Probab=25.00 E-value=1.2e+02 Score=23.14 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy13768 58 RIIVNIFVALMLGVLFQN 75 (175)
Q Consensus 58 rl~~~i~~~ll~G~~f~~ 75 (175)
.++..++.|+++|.+++.
T Consensus 16 ~~~~ll~~g~~~G~~~~~ 33 (185)
T TIGR02161 16 ALGTLLLGGFVGGIVFWG 33 (185)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556677788877653
No 41
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=24.97 E-value=2.7e+02 Score=20.11 Aligned_cols=36 Identities=11% Similarity=-0.008 Sum_probs=24.7
Q ss_pred HHHHHHhcCCCc--------chhHHHHHHHHHhHhHHHHhhhhh
Q psy13768 114 SILIKEHFNRWY--------SLKAYYVSVNLLDIPVADCGPMLY 149 (175)
Q Consensus 114 ~v~~RE~~~g~Y--------~~~~y~la~~l~elP~~~i~~~if 149 (175)
..+.+|+++|++ +...++.||.++-.-..++..++.
T Consensus 68 ~~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~ 111 (232)
T PF12730_consen 68 LLFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLIS 111 (232)
T ss_pred HHHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777753 567799999888876665555443
No 42
>PF09847 DUF2074: Predicted permease (DUF2074); InterPro: IPR018646 This family has no known function.
Probab=23.82 E-value=4.9e+02 Score=22.73 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHhhHHhhhchhHHHHHHHHHHHHHHH
Q psy13768 32 SYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALM 68 (175)
Q Consensus 32 s~~~Q~~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll 68 (175)
+...-...+++..+|...|+++... -++..++.++.
T Consensus 245 k~~~~~~al~~KDlK~~~R~sq~l~-~~L~Pl~~~i~ 280 (449)
T PF09847_consen 245 KIRSPLLALFKKDLKILFRKSQLLF-GFLYPLVFVIP 280 (449)
T ss_pred ccCcchHHHHHHHHHHHHcchhHHH-HHHHHHHHHHH
Confidence 3333456788899999999987755 34444444444
No 43
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=23.23 E-value=1.5e+02 Score=22.95 Aligned_cols=18 Identities=11% Similarity=0.362 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy13768 58 RIIVNIFVALMLGVLFQN 75 (175)
Q Consensus 58 rl~~~i~~~ll~G~~f~~ 75 (175)
.++..+++|+++|.++|.
T Consensus 25 ~l~~lll~g~~~G~~~~~ 42 (200)
T PRK10617 25 ALGTLLLIGFVGGIIFWG 42 (200)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556678888888764
No 44
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=23.10 E-value=1.7e+02 Score=16.96 Aligned_cols=30 Identities=7% Similarity=0.204 Sum_probs=17.8
Q ss_pred hHHhhhchhHHHHHHH--HHHHHHHHHHHHhc
Q psy13768 45 LLKVKRDSTLTHLRII--VNIFVALMLGVLFQ 74 (175)
Q Consensus 45 ~~~~~R~~~~~~~rl~--~~i~~~ll~G~~f~ 74 (175)
.++..|-....+.++. ..-++|+++|..|.
T Consensus 12 MRNMVRKg~~SL~HF~LT~~gll~~lv~la~l 43 (45)
T PF11688_consen 12 MRNMVRKGGTSLFHFGLTAVGLLGFLVGLAYL 43 (45)
T ss_pred HHHHHHccCcchhHHHHHHHHHHHHHHHHHHh
Confidence 3444454444445554 34478999998874
No 45
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=21.04 E-value=3.3e+02 Score=19.59 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=33.9
Q ss_pred hhHHhHHHHHHHhcCCCcchhHHHHHHHHHhHhHHHHhhhhhhhhhc
Q psy13768 108 TFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVADCGPMLYLEAHF 154 (175)
Q Consensus 108 ~~~~er~v~~RE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y 154 (175)
...+|+..+.|-+..-. +.+.+.++|++...-..++...+...+.+
T Consensus 13 ~~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~ 58 (152)
T TIGR01248 13 TIDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIAL 58 (152)
T ss_pred HHHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888777766 67889999999998777777665555554
Done!