Query psy13768
Match_columns 175
No_of_seqs 173 out of 1080
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 20:00:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13768.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13768hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_L Photosystem II reaction 12.1 1.9E+02 0.0066 15.1 3.6 19 56-74 18-36 (37)
2 1loi_A Cyclic 3',5'-AMP specif 10.4 68 0.0023 15.1 0.3 13 26-38 12-24 (26)
3 1peh_A Pepnh1; transferase, nu 10.2 70 0.0024 16.6 0.3 13 4-16 7-19 (35)
4 1c94_A Retro-GCN4 leucine zipp 9.7 61 0.0021 16.7 -0.1 13 2-14 25-37 (38)
5 1scf_A Stem cell factor; steel 9.2 68 0.0023 24.7 0.0 37 42-78 201-241 (273)
6 2q97_T Toxofilin, actin, alpha 8.1 60 0.002 21.7 -0.6 19 3-21 72-90 (129)
7 1jb0_M Photosystem 1 reaction 6.9 2.4E+02 0.0083 14.3 1.5 20 58-77 7-26 (31)
8 4av3_A K(+)-stimulated pyropho 6.4 3.1E+02 0.011 24.5 2.9 39 1-48 582-620 (735)
9 1vda_A FMBP-1, fibroin-modulat 6.2 1E+02 0.0035 14.6 -0.2 13 3-15 4-16 (26)
10 2q67_A Potassium channel prote 5.7 6.3E+02 0.022 16.1 4.3 39 33-74 4-42 (114)
No 1
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=12.13 E-value=1.9e+02 Score=15.14 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q psy13768 56 HLRIIVNIFVALMLGVLFQ 74 (175)
Q Consensus 56 ~~rl~~~i~~~ll~G~~f~ 74 (175)
..-+...+++|+++..-|+
T Consensus 18 y~GLLlifvlavlFssyff 36 (37)
T 3arc_L 18 YLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcc
Confidence 3334455555666555443
No 2
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=10.43 E-value=68 Score=15.13 Aligned_cols=13 Identities=8% Similarity=-0.097 Sum_probs=9.6
Q ss_pred cccCCCCHHHHHH
Q psy13768 26 QILQDTSYSNQLG 38 (175)
Q Consensus 26 ~~~~~~s~~~Q~~ 38 (175)
.+|.-.+||.||+
T Consensus 12 skpwlvgwwdqfk 24 (26)
T 1loi_A 12 SKPWLVGWWDQFK 24 (26)
T ss_dssp SCTTGGGGHHHHT
T ss_pred CCchhhhhHHHhc
Confidence 3456778999985
No 3
>1peh_A Pepnh1; transferase, nucleotidyltransferase, repeat, phospholipid biosynthesis, membrane, phosphorylation; NMR {Rattus norvegicus} SCOP: j.14.1.1
Probab=10.23 E-value=70 Score=16.57 Aligned_cols=13 Identities=31% Similarity=0.220 Sum_probs=8.6
Q ss_pred hhhcCCCCCcccc
Q psy13768 4 QAQNDVKPDKKTK 16 (175)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (175)
..|+++|++++--
T Consensus 7 ~lQ~~VDk~K~kv 19 (35)
T 1peh_A 7 HLQERVDKVKKKV 19 (35)
T ss_dssp CCSSSTTGGGGGT
T ss_pred HHHHHHHHHHHHH
Confidence 3578888876543
No 4
>1c94_A Retro-GCN4 leucine zipper; retro-coiled coil, 4-alpha-helix-bundle, peptide synthesis, gene regulation; 2.08A {Synthetic} SCOP: k.11.1.1
Probab=9.66 E-value=61 Score=16.70 Aligned_cols=13 Identities=8% Similarity=0.450 Sum_probs=8.4
Q ss_pred hhhhhcCCCCCcc
Q psy13768 2 VEQAQNDVKPDKK 14 (175)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (175)
.|+||.++++|++
T Consensus 25 leevkdelqkmrq 37 (38)
T 1c94_A 25 LEEVKDELQKMRQ 37 (38)
T ss_dssp HHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhc
Confidence 4667777776654
No 5
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=9.18 E-value=68 Score=24.71 Aligned_cols=37 Identities=16% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHhhHHhhhchhHHHHHH----HHHHHHHHHHHHHhcCCCc
Q psy13768 42 SRGLLKVKRDSTLTHLRI----IVNIFVALMLGVLFQNSGE 78 (175)
Q Consensus 42 ~R~~~~~~R~~~~~~~rl----~~~i~~~ll~G~~f~~~~~ 78 (175)
.|.-.....++...+.-+ +..+++|+++|.+||...+
T Consensus 201 n~~a~~~~~~~slq~~~~~l~al~slvigf~~ga~~wk~k~ 241 (273)
T 1scf_A 201 NRKAKNPPGDSSLHWAAMALPALFSLIIGFAFGALYWKKRQ 241 (273)
T ss_dssp -----------------------------------------
T ss_pred cccccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 343444445555555444 4677899999999997765
No 6
>2q97_T Toxofilin, actin, alpha skeletal muscle; structural protein, structural protein-cell invasion complex; HET: HIC ATP; 2.50A {Toxoplasma gondii}
Probab=8.10 E-value=60 Score=21.71 Aligned_cols=19 Identities=26% Similarity=0.178 Sum_probs=15.7
Q ss_pred hhhhcCCCCCccccccccc
Q psy13768 3 EQAQNDVKPDKKTKKTKHC 21 (175)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (175)
|++|.|+.+++++.|+...
T Consensus 72 Eqvq~dl~~mSPEtKa~LI 90 (129)
T 2q97_T 72 EQVQRDLSQLSPETKALLI 90 (129)
T ss_dssp HHHHHHHTTSCTTHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHH
Confidence 7899999999998877543
No 7
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=6.90 E-value=2.4e+02 Score=14.25 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q psy13768 58 RIIVNIFVALMLGVLFQNSG 77 (175)
Q Consensus 58 rl~~~i~~~ll~G~~f~~~~ 77 (175)
+++..++.+++.|.+=.++|
T Consensus 7 Qi~iAL~~Al~~~iLA~rLg 26 (31)
T 1jb0_M 7 QVYVALVIALLPAVLAFRLS 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555566666665544433
No 8
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=6.44 E-value=3.1e+02 Score=24.53 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=11.7
Q ss_pred ChhhhhcCCCCCccccccccccccccccCCCCHHHHHHHHHHHhhHHh
Q psy13768 1 MVEQAQNDVKPDKKTKKTKHCTYSNQILQDTSYSNQLGVLLSRGLLKV 48 (175)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~ 48 (175)
|||||+.|.+|++.--+.+ -++.+-+-...+.+...|..
T Consensus 582 mV~EVRRQFreipGimeg~---------~kPdy~~cV~I~T~~AlkeM 620 (735)
T 4av3_A 582 MVDEIRRQAREIPGLLEGK---------AKPDYNRCIEITSDNALKQM 620 (735)
T ss_dssp HHTC----------------------------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCCcccCC---------CCCChHHHHHHHHHHHHHHh
Confidence 4566666555554322111 22334455566666666655
No 9
>1vda_A FMBP-1, fibroin-modulator-binding-protein-1; tandem repeat, N-CAP, DNA binding, transcription; NMR {Synthetic} PDB: 1wnn_A
Probab=6.20 E-value=1e+02 Score=14.63 Aligned_cols=13 Identities=15% Similarity=-0.054 Sum_probs=8.1
Q ss_pred hhhhcCCCCCccc
Q psy13768 3 EQAQNDVKPDKKT 15 (175)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (175)
+|.|.++++|++-
T Consensus 4 ~qr~~rl~rms~y 16 (26)
T 1vda_A 4 AQRQARLLRMSAY 16 (26)
T ss_dssp HHHHHHHTSCSSS
T ss_pred HHHHHHHHHHHHH
Confidence 4666677776543
No 10
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=5.75 E-value=6.3e+02 Score=16.11 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhHHhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy13768 33 YSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQ 74 (175)
Q Consensus 33 ~~~Q~~~l~~R~~~~~~R~~~~~~~rl~~~i~~~ll~G~~f~ 74 (175)
+.-++..++++ .+..+|++.. ...+..++..++.|.+.+
T Consensus 4 ~~~~~~rl~~~-~~~~~~~~~~--~~~~~~~~~~~~~g~~~~ 42 (114)
T 2q67_A 4 FLLTLKRMLRA-CLRAWKDKEF--QVLFVLTILTLISGTIFY 42 (114)
T ss_dssp HHHHHHHHHHH-HHHHTTCHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHhhhhH--HHHHHHHHHHHHHHHHHH
Confidence 34445555555 3444566654 223334444555665543
Done!