Query psy13768
Match_columns 175
No_of_seqs 173 out of 1080
Neff 8.2
Searched_HMMs 13730
Date Fri Aug 16 20:00:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13768.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13768hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 22.5 44 0.0032 16.2 3.6 20 55-74 17-36 (37)
2 d1jb0m_ f.23.19.1 (M:) Subunit 11.3 82 0.0059 14.5 2.0 19 58-76 7-25 (31)
3 d2e74e1 f.23.24.1 (E:1-32) Pet 9.4 1E+02 0.0075 14.0 2.5 13 61-73 12-24 (32)
4 d2nwwa1 f.49.1.1 (A:12-416) Pr 7.2 3.9E+02 0.028 19.4 5.8 18 58-75 4-21 (405)
5 d2e74d2 f.23.12.1 (D:12-45) IS 5.6 1.8E+02 0.013 13.5 3.4 10 64-73 16-25 (34)
6 d1q90g_ f.23.26.1 (G:) PetG su 4.5 2.1E+02 0.015 12.9 1.9 10 63-72 5-14 (30)
7 d2idob1 a.237.1.1 (B:2-76) Hom 3.6 2.7E+02 0.019 15.6 1.8 21 106-126 48-68 (75)
8 d2axtm1 f.23.35.1 (M:1-36) Pho 3.2 3.2E+02 0.023 12.9 1.8 13 142-154 14-26 (36)
9 d1otsa_ f.20.1.1 (A:) Clc chlo 3.1 3.5E+02 0.025 20.0 2.7 16 57-72 18-33 (444)
10 d2ae9a1 a.237.1.1 (A:1-76) The 2.9 3.4E+02 0.025 15.2 1.8 19 106-124 48-66 (76)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.53 E-value=44 Score=16.24 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy13768 55 THLRIIVNIFVALMLGVLFQ 74 (175)
Q Consensus 55 ~~~rl~~~i~~~ll~G~~f~ 74 (175)
...-++..+++|+++..-|+
T Consensus 17 Ly~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 17 LYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33344555566666666554
No 2
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=11.27 E-value=82 Score=14.51 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q psy13768 58 RIIVNIFVALMLGVLFQNS 76 (175)
Q Consensus 58 rl~~~i~~~ll~G~~f~~~ 76 (175)
+....++++++-|.+-|++
T Consensus 7 qv~valvial~pg~lafrl 25 (31)
T d1jb0m_ 7 QVYVALVIALLPAVLAFRL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666777777665543
No 3
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.38 E-value=1e+02 Score=14.00 Aligned_cols=13 Identities=23% Similarity=0.938 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHh
Q psy13768 61 VNIFVALMLGVLF 73 (175)
Q Consensus 61 ~~i~~~ll~G~~f 73 (175)
..++.|+..|.+|
T Consensus 12 ialffgiavgiif 24 (32)
T d2e74e1 12 IALFFGIAVGIIF 24 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhee
Confidence 3444455555544
No 4
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=7.15 E-value=3.9e+02 Score=19.40 Aligned_cols=18 Identities=11% Similarity=0.659 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy13768 58 RIIVNIFVALMLGVLFQN 75 (175)
Q Consensus 58 rl~~~i~~~ll~G~~f~~ 75 (175)
|++..++.|+++|..+..
T Consensus 4 rili~lv~Gi~~G~~~~~ 21 (405)
T d2nwwa1 4 KILIGLILGAIVGLILGH 21 (405)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 555666666666666543
No 5
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.60 E-value=1.8e+02 Score=13.50 Aligned_cols=10 Identities=30% Similarity=0.717 Sum_probs=4.9
Q ss_pred HHHHHHHHHh
Q psy13768 64 FVALMLGVLF 73 (175)
Q Consensus 64 ~~~ll~G~~f 73 (175)
+.|..+|.+|
T Consensus 16 ~tg~alg~ly 25 (34)
T d2e74d2 16 VTGVALGALY 25 (34)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhh
Confidence 4455555544
No 6
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.53 E-value=2.1e+02 Score=12.91 Aligned_cols=10 Identities=20% Similarity=0.796 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q psy13768 63 IFVALMLGVL 72 (175)
Q Consensus 63 i~~~ll~G~~ 72 (175)
++.|+++|++
T Consensus 5 ll~GivlGli 14 (30)
T d1q90g_ 5 LLCGIVLGLV 14 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhHHHhhH
Confidence 3455555554
No 7
>d2idob1 a.237.1.1 (B:2-76) Homolog of theta (HOT) {Bacteriophage P1 [TaxId: 10678]}
Probab=3.60 E-value=2.7e+02 Score=15.59 Aligned_cols=21 Identities=14% Similarity=-0.029 Sum_probs=15.2
Q ss_pred HhhhHHhHHHHHHHhcCCCcc
Q psy13768 106 ILTFPMEMSILIKEHFNRWYS 126 (175)
Q Consensus 106 i~~~~~er~v~~RE~~~g~Y~ 126 (175)
+..++.||-.++|+++.++=+
T Consensus 48 LR~yF~eRL~~yR~~s~~l~r 68 (75)
T d2idob1 48 LRTYFMERLRHYRQLSLQLPK 68 (75)
T ss_dssp GHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHhhcCc
Confidence 345778888888888776643
No 8
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.22 E-value=3.2e+02 Score=12.90 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=9.1
Q ss_pred HHHhhhhhhhhhc
Q psy13768 142 ADCGPMLYLEAHF 154 (175)
Q Consensus 142 ~~i~~~if~~i~Y 154 (175)
.++.|.+|.+|.|
T Consensus 14 FilvPt~FLliLy 26 (36)
T d2axtm1 14 FVLVPSVFLIILY 26 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 3556777888877
No 9
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=3.11 E-value=3.5e+02 Score=19.95 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy13768 57 LRIIVNIFVALMLGVL 72 (175)
Q Consensus 57 ~rl~~~i~~~ll~G~~ 72 (175)
..++..+++|++.|.+
T Consensus 18 ~~~~la~liGi~~gl~ 33 (444)
T d1otsa_ 18 AILFMAAVVGTLVGLA 33 (444)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455566667777743
No 10
>d2ae9a1 a.237.1.1 (A:1-76) Theta subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}
Probab=2.89 E-value=3.4e+02 Score=15.15 Aligned_cols=19 Identities=11% Similarity=-0.097 Sum_probs=0.0
Q ss_pred HhhhHHhHHHHHHHhcCCC
Q psy13768 106 ILTFPMEMSILIKEHFNRW 124 (175)
Q Consensus 106 i~~~~~er~v~~RE~~~g~ 124 (175)
+..++.||-.++|..+.++
T Consensus 48 LR~yF~eRL~~yR~~s~~~ 66 (76)
T d2ae9a1 48 LRSWFRERLIAHRLASVNL 66 (76)
T ss_dssp GHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhc
Done!