RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13768
         (175 letters)



>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
           Family protein.  [Transport and binding proteins,
           Other].
          Length = 617

 Score = 76.2 bits (188), Expect = 1e-16
 Identities = 31/132 (23%), Positives = 59/132 (44%)

Query: 19  KHCTYSNQILQDTSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGE 78
           K       I  + S+  Q   LL R  L V RD  L  +R+I  +  A+++G+++   G 
Sbjct: 325 KDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL 384

Query: 79  YASSVLINYNLLFSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLD 138
               V      LF  L +    ++   I  F  E+ + ++E  +  Y + AY+++  + +
Sbjct: 385 TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAE 444

Query: 139 IPVADCGPMLYL 150
           +P+    P L+ 
Sbjct: 445 LPLFIILPALFT 456


>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter. 
          Length = 210

 Score = 61.1 bits (149), Expect = 6e-12
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 36  QLGVLLSRGLLKVKRDSTLTHL-RIIVNIFVALMLGVLFQNSGEYASSVLINYNLLFSIL 94
           QL  LL R  L+  RD +L  L R+I  + +AL+ G +F N       +     LLF  +
Sbjct: 2   QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLNRPG-LLFFSI 60

Query: 95  IHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVA 142
           + +  +S+      F  E  +L +E  +  YS  AY ++  L+++P++
Sbjct: 61  LFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPIS 108


>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
          Length = 659

 Score = 47.6 bits (113), Expect = 9e-07
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 31  TSYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYNLL 90
           +++ NQ  +LL R L K ++  +   LR+   I  AL+ G+++ +S      V     LL
Sbjct: 386 STWFNQFSILLQRSL-KERKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLL 442

Query: 91  FSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSLKAYYVSVNLLDIPVADCGPMLYL 150
           F I I   +     ++  FP E +I +KE  +  Y+L +Y+++  + D+P+    P ++L
Sbjct: 443 FFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFL 502


>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
           protein.  [Transport and binding proteins, Other].
          Length = 1394

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 9/114 (7%)

Query: 32  SYSNQLGVLLSRGLLKVKRDSTLTHLRIIVNIFVALMLGVLFQNSGEYASSVLINYN-LL 90
           S+S Q+   L+R  L++K + + T   +  NI +AL+L  +F N  +  S        L 
Sbjct: 399 SFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALF 458

Query: 91  FSILIHHVMTSMMLNILTFPMEMSILIKEHFNRWYSL---KAYYVSVNLLDIPV 141
           F+IL +    S +L I +      I+ K   +R Y+L    A  ++  + +IP 
Sbjct: 459 FAILFN--AFSSLLEIASMYEARPIVEK---HRKYALYHPSADAIASIISEIPF 507


>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
           bifunctional fatty acid transporter/very-long-chain
           acyl-CoA synthetase in fungi.  Fatty acid transport
           protein (FATP) transports long-chain or very-long-chain
           fatty acids across the plasma membrane. FATPs also have
           fatty acid CoA synthetase activity, thus playing dual
           roles as fatty acid transporters and its activation
           enzymes. FATPs are the key players in the trafficking of
           exogenous fatty acids into the cell and in intracellular
           fatty acid homeostasis. Members of this family are
           fungal FATPs, including FAT1 from Cochliobolus
           heterostrophus.
          Length = 468

 Score = 28.2 bits (63), Expect = 2.7
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 11/67 (16%)

Query: 62  NIFVALMLGVLFQNSGEY-----------ASSVLINYNLLFSILIHHVMTSMMLNILTFP 110
           N+     + +   NS E+           A    INYNL    LIH +  S    ++  P
Sbjct: 27  NVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFINYNLSGDPLIHCLKISGAKFVIVDP 86

Query: 111 MEMSILI 117
            + + LI
Sbjct: 87  DDPAALI 93


>gnl|CDD|202456 pfam02898, NO_synthase, Nitric oxide synthase, oxygenase domain. 
          Length = 366

 Score = 26.6 bits (59), Expect = 7.5
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 7/36 (19%)

Query: 123 RWYSLKAYYVSVNLLDIPVADCGPMLYLEAHFNRWY 158
           +WY+L A  VS  LLD     CG + +    FN WY
Sbjct: 215 KWYALPA--VSNMLLD-----CGGLEFPACPFNGWY 243


>gnl|CDD|117168 pfam08594, UPF0300, Uncharacterized protein family (UPF0300).
          This family of proteins appear to be specific to S.
          pombe.
          Length = 215

 Score = 26.2 bits (58), Expect = 9.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 73 FQNSGEYASSVLINYNLLFSILIHHVM 99
            +  +  S  L N N   ++LIHHVM
Sbjct: 6  KPSCFKRLSDFLSNGNAPLTVLIHHVM 32


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0829    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,580,154
Number of extensions: 780309
Number of successful extensions: 883
Number of sequences better than 10.0: 1
Number of HSP's gapped: 877
Number of HSP's successfully gapped: 32
Length of query: 175
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 85
Effective length of database: 6,945,742
Effective search space: 590388070
Effective search space used: 590388070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.2 bits)