RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13768
         (175 letters)



>d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma
           acidophilum [TaxId: 2303]}
          Length = 55

 Score = 27.8 bits (62), Expect = 0.15
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 144 CGPMLYLEAHFNRWYSLKAYY 164
           CGP ++L  H +R+   +  Y
Sbjct: 24  CGPGVFLAEHADRYSCGRCGY 44


>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 421

 Score = 26.2 bits (58), Expect = 2.2
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 7/36 (19%)

Query: 123 RWYSLKAYYVSVNLLDIPVADCGPMLYLEAHFNRWY 158
           +WY+L A  V+  LL++     G + +    FN WY
Sbjct: 263 KWYALPA--VANMLLEV-----GGLEFPACPFNGWY 291


>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 418

 Score = 26.2 bits (58), Expect = 2.4
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 7/36 (19%)

Query: 123 RWYSLKAYYVSVNLLDIPVADCGPMLYLEAHFNRWY 158
           +WY L A  VS  LL+I     G + +    F+ WY
Sbjct: 262 KWYGLPA--VSNMLLEI-----GGLEFSACPFSGWY 290


>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 416

 Score = 25.9 bits (57), Expect = 2.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 7/36 (19%)

Query: 123 RWYSLKAYYVSVNLLDIPVADCGPMLYLEAHFNRWY 158
           RWY+L A  VS  LL+I     G + +  A F+ WY
Sbjct: 265 RWYALPA--VSNMLLEI-----GGLEFSAAPFSGWY 293


>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Bacillus subtilis [TaxId: 1423]}
          Length = 363

 Score = 25.1 bits (55), Expect = 6.0
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 7/36 (19%)

Query: 123 RWYSLKAYYVSVNLLDIPVADCGPMLYLEAHFNRWY 158
           +WY +    +S   L++     G + Y  A FN WY
Sbjct: 211 KWYGVPI--ISDMKLEV-----GGIHYNAAPFNGWY 239


>d1mjta_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 346

 Score = 24.7 bits (54), Expect = 6.6
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 7/36 (19%)

Query: 123 RWYSLKAYYVSVNLLDIPVADCGPMLYLEAHFNRWY 158
           +WY++    +S   L I     G ++Y  A FN WY
Sbjct: 198 KWYAVPI--ISNMDLKI-----GGIVYPTAPFNGWY 226


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 614,691
Number of extensions: 25279
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 9
Length of query: 175
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,322,926
Effective search space: 127000896
Effective search space used: 127000896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.2 bits)