BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13769
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CMO|A Chain A, Immunoglobulin Motif Dna-Recognition And
Heterodimerization For The Pebp2CBF RUNT-Domain
Length = 127
Score = 197 bits (502), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 91/125 (72%), Positives = 108/125 (86%)
Query: 28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
E L ++ GELV+T SP LCSVLPTHWRSNK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct: 2 EVLADHPGELVRTDSPNFLCSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 61
Query: 88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
Y ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct: 62 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 121
Query: 148 PREPR 152
PREPR
Sbjct: 122 PREPR 126
>pdb|1H9D|A Chain A, Aml1CBF-BetaDNA COMPLEX
pdb|1H9D|C Chain C, Aml1CBF-BetaDNA COMPLEX
pdb|1E50|A Chain A, Aml1CBF COMPLEX
pdb|1E50|C Chain C, Aml1CBF COMPLEX
pdb|1E50|E Chain E, Aml1CBF COMPLEX
pdb|1E50|G Chain G, Aml1CBF COMPLEX
pdb|1E50|Q Chain Q, Aml1CBF COMPLEX
pdb|1E50|R Chain R, Aml1CBF COMPLEX
Length = 134
Score = 195 bits (496), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 90/125 (72%), Positives = 107/125 (85%)
Query: 28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
E L ++ GELV+T SP LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct: 4 EVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 63
Query: 88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
Y ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct: 64 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 123
Query: 148 PREPR 152
PREPR
Sbjct: 124 PREPR 128
>pdb|1LJM|A Chain A, Dna Recognition Is Mediated By Conformational Transition
And By Dna Bending
pdb|1LJM|B Chain B, Dna Recognition Is Mediated By Conformational Transition
And By Dna Bending
Length = 131
Score = 195 bits (495), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 90/125 (72%), Positives = 107/125 (85%)
Query: 28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
E L ++ GELV+T SP LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct: 3 EVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 62
Query: 88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
Y ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct: 63 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 122
Query: 148 PREPR 152
PREPR
Sbjct: 123 PREPR 127
>pdb|1EAN|A Chain A, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
pdb|1EAO|A Chain A, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
pdb|1EAO|B Chain B, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
Length = 140
Score = 195 bits (495), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 90/125 (72%), Positives = 107/125 (85%)
Query: 28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
E L ++ GELV+T SP L SVLPTHWRSNK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct: 8 EVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 67
Query: 88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
Y ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct: 68 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 127
Query: 148 PREPR 152
PREPR
Sbjct: 128 PREPR 132
>pdb|1EAQ|A Chain A, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
pdb|1EAQ|B Chain B, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
Length = 140
Score = 194 bits (493), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 90/125 (72%), Positives = 106/125 (84%)
Query: 28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
E L ++ GELV+T SP L SVLPTHWRSNK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct: 8 EVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVXAGNDEN 67
Query: 88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
Y ELRN TA KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct: 68 YSAELRNATAAXKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 127
Query: 148 PREPR 152
PREPR
Sbjct: 128 PREPR 132
>pdb|2J6W|A Chain A, R164n Mutant Of The Runx1 Runt Domain
pdb|2J6W|B Chain B, R164n Mutant Of The Runx1 Runt Domain
Length = 140
Score = 194 bits (492), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 90/125 (72%), Positives = 106/125 (84%)
Query: 28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
E L ++ GELV+T SP L SVLPTHWRSNK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct: 8 EVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 67
Query: 88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
Y ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y+ AIK+TVDG
Sbjct: 68 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHNAIKITVDG 127
Query: 148 PREPR 152
PREPR
Sbjct: 128 PREPR 132
>pdb|1IO4|C Chain C, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN-
Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP
Homodimer Bound To A Dna Fragment From The Csf-1r
Promoter
pdb|1HJB|C Chain C, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
pdb|1HJB|F Chain F, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
pdb|1HJC|A Chain A, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN BOUND
To A Dna Fragment From The Csf-1r Promoter
pdb|1HJC|D Chain D, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN BOUND
To A Dna Fragment From The Csf-1r Promoter
Length = 123
Score = 191 bits (484), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 88/118 (74%), Positives = 103/118 (87%)
Query: 35 GELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRN 94
GELV+T SP LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+NY ELRN
Sbjct: 1 GELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRN 60
Query: 95 CTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPREPR 152
TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDGPREPR
Sbjct: 61 ATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPR 118
>pdb|1CO1|A Chain A, Fold Of The Cbfa
Length = 115
Score = 184 bits (466), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 85/115 (73%), Positives = 100/115 (86%)
Query: 36 ELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNC 95
ELV+T SP LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+NY ELRN
Sbjct: 1 ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA 60
Query: 96 TAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPRE 150
TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDGPRE
Sbjct: 61 TAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPRE 115
>pdb|2J68|A Chain A, Bacterial Dynamin-Like Protein Bdlp, Gdp Bound
pdb|2J69|A Chain A, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|B Chain B, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|C Chain C, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|D Chain D, Bacterial Dynamin-like Protein Bdlp
pdb|2W6D|A Chain A, Bacterial Dynamin-Like Protein Lipid Tube Bound
pdb|2W6D|B Chain B, Bacterial Dynamin-Like Protein Lipid Tube Bound
Length = 695
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 64 FKVVVLDDVMDGTIVTIRAGNDDNYC-GELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFT 122
F+++VL D+ G + A +N ++ CTAV+ V R G K T
Sbjct: 70 FRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLT-----------VLRYGPEKKVT 118
Query: 123 LSIMVGSSPHQIASYNKAIKVTVDGPREPR 152
+ G SP Q+ N K T+D P E +
Sbjct: 119 IHFNDGKSPQQLDFQNFKYKYTID-PAEAK 147
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 38 VQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDD 86
+ GSP + + W N SLP+ + +D ++G + G DD
Sbjct: 198 LAVGSPFVFGFSVYNSWVGNNSLPVRIPLPTKNDTLEGGHAVLCVGYDD 246
>pdb|1JMY|A Chain A, Truncated Recombinant Human Bile Salt Stimulated Lipase
Length = 522
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 26 IHEALQEYHGELVQTGSPTILCSVLPTHWR 55
+ +A+ Y +TG P + S +PTHW
Sbjct: 460 VSKAMIAYWTNFAKTGDPNMGDSAVPTHWE 489
>pdb|1F6W|A Chain A, Structure Of The Catalytic Domain Of Human Bile Salt
Activated Lipase
Length = 533
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 26 IHEALQEYHGELVQTGSPTILCSVLPTHWR 55
+ +A+ Y +TG P + S +PTHW
Sbjct: 460 VSKAMIAYWTNFAKTGDPNMGDSAVPTHWE 489
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,237,829
Number of Sequences: 62578
Number of extensions: 159808
Number of successful extensions: 352
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 13
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)