BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13769
(155 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P22814|RUNT_DROME Segmentation protein Runt OS=Drosophila melanogaster GN=run PE=2
SV=2
Length = 510
Score = 244 bits (624), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 109/146 (74%), Positives = 126/146 (86%)
Query: 9 PEMSSSIEAMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVV 68
P+ S+ + + +DMFA +HE LQEYHGEL QTGSP+ILCS LP HWRSNKSLP AFKV+
Sbjct: 90 PQNSAKMPSSMTDMFASLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIA 149
Query: 69 LDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVG 128
LDDV DGT+V+I+ GND+NYCGELRNCT +KNQVAKFNDLRFVGRSGRGKSFTL+I +
Sbjct: 150 LDDVPDGTLVSIKCGNDENYCGELRNCTTTMKNQVAKFNDLRFVGRSGRGKSFTLTITIA 209
Query: 129 SSPHQIASYNKAIKVTVDGPREPRSK 154
+ P QIASY+KAIKVTVDGPREPRSK
Sbjct: 210 TYPVQIASYSKAIKVTVDGPREPRSK 235
>sp|Q03347|RUNX1_MOUSE Runt-related transcription factor 1 OS=Mus musculus GN=Runx1 PE=1
SV=1
Length = 451
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 90/125 (72%), Positives = 107/125 (85%)
Query: 28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
E L ++ GELV+T SP LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct: 53 EVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 112
Query: 88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
Y ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct: 113 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 172
Query: 148 PREPR 152
PREPR
Sbjct: 173 PREPR 177
>sp|Q01196|RUNX1_HUMAN Runt-related transcription factor 1 OS=Homo sapiens GN=RUNX1 PE=1
SV=3
Length = 453
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 90/125 (72%), Positives = 107/125 (85%)
Query: 28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
E L ++ GELV+T SP LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct: 53 EVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 112
Query: 88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
Y ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct: 113 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 172
Query: 148 PREPR 152
PREPR
Sbjct: 173 PREPR 177
>sp|Q63046|RUNX1_RAT Runt-related transcription factor 1 OS=Rattus norvegicus GN=Runx1
PE=2 SV=1
Length = 450
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 90/125 (72%), Positives = 107/125 (85%)
Query: 28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
E L ++ GELV+T SP LCSVLPTHWR NK+LPIAFKVV L DV DGT+VT+ AGND+N
Sbjct: 53 EVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 112
Query: 88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
Y ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct: 113 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 172
Query: 148 PREPR 152
PREPR
Sbjct: 173 PREPR 177
>sp|Q9W349|LOZEN_DROME Protein lozenge OS=Drosophila melanogaster GN=lz PE=2 SV=2
Length = 826
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 92/130 (70%), Positives = 107/130 (82%)
Query: 26 IHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGND 85
+ + QE+ GELV+T +P LCS LP HWRSNK+LP+AFKVV L +V DGT VTIRAGND
Sbjct: 276 VQKRQQEHPGELVRTSNPYFLCSALPAHWRSNKTLPMAFKVVALAEVGDGTYVTIRAGND 335
Query: 86 DNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTV 145
+N C ELRN T +KN VAKFNDLRFVGRSGRGKSFTL+I V +SP Q+A+Y KAIKVTV
Sbjct: 336 ENCCAELRNFTTQMKNDVAKFNDLRFVGRSGRGKSFTLTITVATSPPQVATYAKAIKVTV 395
Query: 146 DGPREPRSKS 155
DGPREPRSK+
Sbjct: 396 DGPREPRSKT 405
>sp|Q64131|RUNX3_MOUSE Runt-related transcription factor 3 OS=Mus musculus GN=Runx3 PE=2
SV=3
Length = 409
Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 88/125 (70%), Positives = 108/125 (86%)
Query: 28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
+ L ++ GELV+T SP LCSVLP+HWR NK+LP+AFKVV L DV DGT+VT+ AGND+N
Sbjct: 58 DVLADHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAGNDEN 117
Query: 88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
Y ELRN +AV+KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIKVTVDG
Sbjct: 118 YSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPTQVATYHRAIKVTVDG 177
Query: 148 PREPR 152
PREPR
Sbjct: 178 PREPR 182
>sp|Q13761|RUNX3_HUMAN Runt-related transcription factor 3 OS=Homo sapiens GN=RUNX3 PE=1
SV=2
Length = 415
Score = 196 bits (499), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 88/125 (70%), Positives = 108/125 (86%)
Query: 28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
+ L ++ GELV+T SP LCSVLP+HWR NK+LP+AFKVV L DV DGT+VT+ AGND+N
Sbjct: 57 DVLADHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAGNDEN 116
Query: 88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
Y ELRN +AV+KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIKVTVDG
Sbjct: 117 YSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPTQVATYHRAIKVTVDG 176
Query: 148 PREPR 152
PREPR
Sbjct: 177 PREPR 181
>sp|Q6PF39|RUNX1_XENLA Runt-related transcription factor 1 OS=Xenopus laevis GN=runx1 PE=2
SV=2
Length = 462
Score = 196 bits (498), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 88/125 (70%), Positives = 107/125 (85%)
Query: 28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
E L ++ GELV+T SP LCSVLPTHWR NK+LPIAFKVV L +V DGT+VT+ AGND+N
Sbjct: 53 EVLSDHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGEVPDGTLVTVMAGNDEN 112
Query: 88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
Y ELRN TA +K+QVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TVDG
Sbjct: 113 YSAELRNATAAMKSQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 172
Query: 148 PREPR 152
PREPR
Sbjct: 173 PREPR 177
>sp|Q13950|RUNX2_HUMAN Runt-related transcription factor 2 OS=Homo sapiens GN=RUNX2 PE=1
SV=2
Length = 521
Score = 192 bits (489), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 86/125 (68%), Positives = 107/125 (85%)
Query: 28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
E + ++ ELV+T SP LCSVLP+HWR NK+LP+AFKVV L +V DGT+VT+ AGND+N
Sbjct: 104 EIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAGNDEN 163
Query: 88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
Y ELRN +AV+KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIKVTVDG
Sbjct: 164 YSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDG 223
Query: 148 PREPR 152
PREPR
Sbjct: 224 PREPR 228
>sp|Q08775|RUNX2_MOUSE Runt-related transcription factor 2 OS=Mus musculus GN=Runx2 PE=1
SV=2
Length = 607
Score = 192 bits (487), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 86/125 (68%), Positives = 107/125 (85%)
Query: 28 EALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDN 87
E + ++ ELV+T SP LCSVLP+HWR NK+LP+AFKVV L +V DGT+VT+ AGND+N
Sbjct: 190 EIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAGNDEN 249
Query: 88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
Y ELRN +AV+KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIKVTVDG
Sbjct: 250 YSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDG 309
Query: 148 PREPR 152
PREPR
Sbjct: 310 PREPR 314
>sp|Q9Z2J9|RUNX2_RAT Runt-related transcription factor 2 (Fragments) OS=Rattus
norvegicus GN=Runx2 PE=2 SV=2
Length = 218
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 86/96 (89%)
Query: 57 NKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSG 116
NK+LP+AFKVV L +V DGT+VT+ AGND+NY ELRN +AV+KNQVA+FNDLRFVGRSG
Sbjct: 99 NKTLPVAFKVVALGEVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSG 158
Query: 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPREPR 152
RGKSFTL+I V ++P Q+A+Y++AIKVTVDGPREPR
Sbjct: 159 RGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREPR 194
>sp|Q25520|RUNT_MANSE Segmentation protein Runt (Fragment) OS=Manduca sexta GN=RUNT PE=2
SV=1
Length = 79
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/78 (76%), Positives = 70/78 (89%)
Query: 69 LDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVG 128
LDDV DGT+VTI+AGND+N ELRNCTAV+KNQVAKFNDLRFVGRSGRGKSFTL+I +
Sbjct: 2 LDDVQDGTLVTIKAGNDENVMAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITIS 61
Query: 129 SSPHQIASYNKAIKVTVD 146
+ P Q+A+Y+KAIKVTVD
Sbjct: 62 TFPSQVATYSKAIKVTVD 79
>sp|Q84M24|AB1A_ARATH ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1
PE=2 SV=2
Length = 1882
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 69 LDDVMDGTIVTIRAGNDDNYCGELRN-----------CTAVVKNQVAKFND--LRFVGRS 115
D V + + +R D C ++RN C AV Q+ + + L +G +
Sbjct: 528 FDPVFESISLEMRQQELDGRCIQVRNLHKVYASRRGNCCAVNSLQLTLYENQILSLLGHN 587
Query: 116 GRGKSFTLSIMVGSSP 131
G GKS T+S++VG P
Sbjct: 588 GAGKSTTISMLVGLLP 603
>sp|O15504|NUPL2_HUMAN Nucleoporin-like protein 2 OS=Homo sapiens GN=NUPL2 PE=1 SV=1
Length = 423
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 32 EYHGELVQTGSPTILCSV--LPTHWRSN----KSLPIAFKVVVLDDVMDG 75
EYH L + L SV L WR+ KSL I+ KV +L DV DG
Sbjct: 161 EYHNFLTSNNLQSYLNSVQRLINQWRNRVNELKSLNISTKVALLSDVKDG 210
>sp|Q5RB98|NUPL2_PONAB Nucleoporin-like protein 2 OS=Pongo abelii GN=NUPL2 PE=2 SV=1
Length = 423
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 32 EYHGELVQTGSPTILCSV--LPTHWRSN----KSLPIAFKVVVLDDVMDG 75
EYH L + L SV L WR+ KSL I+ KV +L DV DG
Sbjct: 161 EYHNFLTSNNLQSYLNSVQRLINQWRNRVNELKSLNISTKVALLSDVKDG 210
>sp|Q97X60|Y1893_SULSO Putative ABC transporter ATP-binding protein SSO1893 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=SSO1893 PE=3 SV=1
Length = 530
Score = 29.6 bits (65), Expect = 7.6, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQI 134
Y G+ + + K + + + GRSG GKS +S++ G PH I
Sbjct: 13 YMGKTKPSIVIDKLDIEEGESVLITGRSGSGKSTLVSVINGVIPHLI 59
>sp|Q97WT4|Y2030_SULSO Putative ABC transporter ATP-binding protein SSO2030 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=SSO2030 PE=3 SV=1
Length = 530
Score = 29.3 bits (64), Expect = 9.7, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 88 YCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQI 134
Y G+ + V K + + + GRSG GKS +S++ G PH I
Sbjct: 13 YMGKDKPSIVVDKLDIEEGESVLITGRSGSGKSTLVSVINGVIPHLI 59
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,985,525
Number of Sequences: 539616
Number of extensions: 2209663
Number of successful extensions: 5787
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5770
Number of HSP's gapped (non-prelim): 22
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)