Query psy13769
Match_columns 155
No_of_seqs 88 out of 90
Neff 2.4
Searched_HMMs 46136
Date Fri Aug 16 20:01:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00853 Runt: Runt domain; I 100.0 2E-93 4.4E-98 555.6 11.5 133 23-155 1-133 (135)
2 KOG3982|consensus 100.0 4.2E-87 9E-92 591.1 13.3 134 21-154 96-230 (475)
3 TIGR02788 VirB11 P-type DNA tr 89.1 2.4 5.2E-05 35.5 7.7 104 18-132 34-170 (308)
4 cd01858 NGP_1 NGP-1. Autoanti 84.2 0.93 2E-05 33.3 2.5 42 78-120 73-116 (157)
5 PRK13894 conjugal transfer ATP 83.2 6.3 0.00014 33.9 7.5 96 17-122 60-164 (319)
6 PF04028 DUF374: Domain of unk 78.2 1.3 2.9E-05 31.3 1.5 13 141-153 62-74 (74)
7 cd01856 YlqF YlqF. Proteins o 76.6 2.5 5.5E-05 31.6 2.7 45 76-121 77-130 (171)
8 TIGR00296 uncharacterized prot 75.1 2.2 4.9E-05 35.0 2.2 71 73-147 43-131 (200)
9 PRK13900 type IV secretion sys 72.9 12 0.00026 32.3 6.2 97 18-123 51-177 (332)
10 PRK13833 conjugal transfer pro 71.1 15 0.00032 32.1 6.3 95 18-123 57-161 (323)
11 TIGR03819 heli_sec_ATPase heli 68.8 15 0.00033 31.8 5.9 103 19-132 92-204 (340)
12 PF00005 ABC_tran: ABC transpo 68.4 2 4.4E-05 30.0 0.5 15 109-123 14-28 (137)
13 TIGR02782 TrbB_P P-type conjug 66.9 29 0.00062 29.4 7.1 95 18-122 45-148 (299)
14 PF01926 MMR_HSR1: 50S ribosom 65.0 2.6 5.7E-05 29.0 0.5 12 109-120 2-13 (116)
15 cd01859 MJ1464 MJ1464. This f 63.6 7.1 0.00015 28.3 2.5 44 77-121 73-116 (156)
16 TIGR03729 acc_ester putative p 62.7 11 0.00024 29.7 3.7 42 75-116 61-110 (239)
17 PRK00801 hypothetical protein; 62.5 6.7 0.00014 32.3 2.5 69 73-147 43-128 (201)
18 PF13555 AAA_29: P-loop contai 62.0 3.1 6.7E-05 28.7 0.4 19 102-120 15-37 (62)
19 cd03273 ABC_SMC2_euk Eukaryoti 61.7 3.2 6.9E-05 33.0 0.5 11 111-121 30-40 (251)
20 PF02575 YbaB_DNA_bd: YbaB/Ebf 61.4 3.7 7.9E-05 28.5 0.7 27 92-118 4-30 (93)
21 COG1132 MdlB ABC-type multidru 61.0 3.2 6.9E-05 36.8 0.4 10 111-120 360-369 (567)
22 cd03279 ABC_sbcCD SbcCD and ot 60.6 3.6 7.7E-05 32.1 0.5 14 110-123 32-45 (213)
23 cd00820 PEPCK_HprK Phosphoenol 60.3 3.6 7.8E-05 30.8 0.5 17 109-125 18-34 (107)
24 PRK13851 type IV secretion sys 59.6 48 0.001 29.1 7.3 59 18-85 49-108 (344)
25 COG1116 TauB ABC-type nitrate/ 59.6 3.5 7.5E-05 35.5 0.4 25 109-133 32-56 (248)
26 cd01849 YlqF_related_GTPase Yl 58.4 9.8 0.00021 27.9 2.5 45 77-122 62-116 (155)
27 PRK14238 phosphate transporter 58.4 5.1 0.00011 32.4 1.1 16 111-126 55-70 (271)
28 COG2274 SunT ABC-type bacterio 58.3 3.8 8.3E-05 39.3 0.5 13 109-121 502-514 (709)
29 PRK12288 GTPase RsgA; Reviewed 58.3 7.9 0.00017 33.7 2.3 36 76-120 184-219 (347)
30 cd03272 ABC_SMC3_euk Eukaryoti 58.3 4.1 8.8E-05 31.7 0.5 11 110-120 27-37 (243)
31 PRK13891 conjugal transfer pro 58.2 3.7 7.9E-05 39.6 0.3 96 24-124 394-506 (852)
32 PF13207 AAA_17: AAA domain; P 57.7 4.3 9.2E-05 27.8 0.5 10 111-120 4-13 (121)
33 cd01853 Toc34_like Toc34-like 57.1 4 8.8E-05 33.7 0.3 12 109-120 34-45 (249)
34 PF03193 DUF258: Protein of un 56.6 4.2 9.1E-05 32.4 0.4 31 82-120 19-49 (161)
35 TIGR02868 CydC thiol reductant 54.7 4.7 0.0001 35.3 0.4 14 107-120 362-375 (529)
36 cd04155 Arl3 Arl3 subfamily. 54.4 5.1 0.00011 28.6 0.5 12 109-120 17-28 (173)
37 cd03263 ABC_subfamily_A The AB 54.4 4.9 0.00011 30.8 0.4 24 109-132 31-54 (220)
38 cd01918 HprK_C HprK/P, the bif 54.2 5 0.00011 31.6 0.4 12 109-120 17-28 (149)
39 TIGR00157 ribosome small subun 53.2 5.3 0.00012 32.5 0.4 35 77-120 100-134 (245)
40 TIGR01166 cbiO cobalt transpor 53.0 5.3 0.00012 30.1 0.4 24 109-132 21-44 (190)
41 cd03224 ABC_TM1139_LivF_branch 52.9 5.4 0.00012 30.5 0.4 25 109-133 29-53 (222)
42 cd03274 ABC_SMC4_euk Eukaryoti 52.9 5.6 0.00012 31.6 0.5 15 110-124 29-43 (212)
43 cd03225 ABC_cobalt_CbiO_domain 52.9 5.4 0.00012 30.4 0.4 24 109-132 30-53 (211)
44 PF14564 Membrane_bind: Membra 52.6 14 0.00029 28.1 2.5 24 108-131 3-27 (110)
45 cd03278 ABC_SMC_barmotin Barmo 52.5 5.6 0.00012 31.1 0.4 15 110-124 26-40 (197)
46 PF04665 Pox_A32: Poxvirus A32 52.3 5.7 0.00012 33.6 0.5 12 110-121 17-28 (241)
47 TIGR02858 spore_III_AA stage I 52.2 37 0.00081 28.7 5.3 102 18-128 27-133 (270)
48 cd03292 ABC_FtsE_transporter F 52.2 5.6 0.00012 30.2 0.4 25 109-133 30-54 (214)
49 cd04114 Rab30 Rab30 subfamily. 52.1 6.4 0.00014 27.9 0.7 14 107-120 8-21 (169)
50 PF10442 FIST_C: FIST C domain 51.9 22 0.00048 25.5 3.5 34 66-99 50-83 (136)
51 cd03235 ABC_Metallic_Cations A 51.8 5.7 0.00012 30.4 0.4 24 109-132 28-51 (213)
52 cd03264 ABC_drug_resistance_li 51.8 5.7 0.00012 30.3 0.4 18 109-126 28-45 (211)
53 cd03261 ABC_Org_Solvent_Resist 51.7 5.8 0.00012 30.9 0.4 24 109-132 29-52 (235)
54 TIGR02673 FtsE cell division A 51.5 5.8 0.00013 30.2 0.4 24 109-132 31-54 (214)
55 PF05356 Phage_Coat_B: Phage C 51.4 4.9 0.00011 30.1 0.0 15 97-111 2-16 (83)
56 COG3638 ABC-type phosphate/pho 51.4 5.3 0.00012 35.0 0.2 13 110-122 34-46 (258)
57 COG1126 GlnQ ABC-type polar am 50.5 6.3 0.00014 34.3 0.5 28 108-135 30-57 (240)
58 PRK14257 phosphate ABC transpo 50.2 6.2 0.00013 33.6 0.4 17 109-125 111-127 (329)
59 PRK11174 cysteine/glutathione 50.0 6.2 0.00013 35.0 0.4 14 108-121 378-391 (588)
60 TIGR02528 EutP ethanolamine ut 49.7 6.5 0.00014 27.4 0.4 12 109-120 3-14 (142)
61 cd01857 HSR1_MMR1 HSR1/MMR1. 49.7 15 0.00033 26.6 2.3 14 108-121 85-98 (141)
62 PRK12289 GTPase RsgA; Reviewed 49.6 15 0.00033 32.2 2.7 35 77-120 152-186 (352)
63 cd03269 ABC_putative_ATPase Th 49.5 6.6 0.00014 30.0 0.4 25 109-133 29-53 (210)
64 PRK13539 cytochrome c biogenes 49.5 6.6 0.00014 30.3 0.4 24 109-132 31-54 (207)
65 cd03265 ABC_DrrA DrrA is the A 49.5 6.6 0.00014 30.3 0.4 24 109-132 29-52 (220)
66 COG1135 AbcC ABC-type metal io 49.5 6.2 0.00014 35.7 0.3 15 109-123 35-49 (339)
67 cd03262 ABC_HisP_GlnQ_permease 49.4 6.6 0.00014 29.8 0.4 24 109-132 29-52 (213)
68 TIGR00960 3a0501s02 Type II (G 49.4 6.6 0.00014 30.1 0.4 24 109-132 32-55 (216)
69 TIGR03797 NHPM_micro_ABC2 NHPM 49.0 6.6 0.00014 35.8 0.4 15 107-121 480-494 (686)
70 cd01868 Rab11_like Rab11-like. 48.9 6.8 0.00015 27.7 0.4 12 109-120 6-17 (165)
71 TIGR01193 bacteriocin_ABC ABC- 48.6 6.7 0.00015 35.9 0.4 18 104-121 498-515 (708)
72 PF01935 DUF87: Domain of unkn 48.3 3.5 7.5E-05 31.9 -1.3 15 111-125 28-42 (229)
73 cd03293 ABC_NrtD_SsuB_transpor 48.3 7 0.00015 30.1 0.4 24 109-132 33-56 (220)
74 cd03266 ABC_NatA_sodium_export 48.3 7 0.00015 29.9 0.4 24 109-132 34-57 (218)
75 PRK00098 GTPase RsgA; Reviewed 47.9 7.1 0.00015 32.6 0.4 36 77-121 144-179 (298)
76 PRK11176 lipid transporter ATP 47.9 7 0.00015 34.6 0.4 19 106-124 369-387 (582)
77 PRK00907 hypothetical protein; 47.7 10 0.00022 28.0 1.2 46 96-141 35-82 (92)
78 PRK10584 putative ABC transpor 47.5 7.4 0.00016 30.1 0.4 24 109-132 39-62 (228)
79 KOG3587|consensus 47.3 23 0.00051 27.0 3.1 22 117-147 86-107 (143)
80 PLN03232 ABC transporter C fam 47.3 7.2 0.00016 39.8 0.4 15 106-120 1262-1276(1495)
81 PF00437 T2SE: Type II/IV secr 47.2 39 0.00085 26.9 4.5 99 18-125 40-146 (270)
82 COG4987 CydC ABC-type transpor 47.2 6.9 0.00015 37.6 0.2 19 103-121 361-379 (573)
83 cd03219 ABC_Mj1267_LivG_branch 47.1 7.5 0.00016 30.1 0.4 25 109-133 29-53 (236)
84 PRK14241 phosphate transporter 47.0 7.5 0.00016 30.9 0.4 20 109-128 33-52 (258)
85 cd03257 ABC_NikE_OppD_transpor 47.0 7.5 0.00016 29.7 0.4 24 109-132 34-57 (228)
86 PRK09825 idnK D-gluconate kina 46.8 7.6 0.00017 30.0 0.4 14 109-122 6-19 (176)
87 cd03270 ABC_UvrA_I The excisio 46.6 7.8 0.00017 30.7 0.4 14 109-122 24-37 (226)
88 TIGR03597 GTPase_YqeH ribosome 46.5 17 0.00036 31.4 2.4 39 77-120 130-168 (360)
89 TIGR03410 urea_trans_UrtE urea 46.4 7.8 0.00017 30.0 0.4 25 109-133 29-53 (230)
90 PRK10790 putative multidrug tr 46.3 7.7 0.00017 34.6 0.4 26 108-133 369-394 (592)
91 cd01855 YqeH YqeH. YqeH is an 46.3 20 0.00044 27.0 2.6 41 76-120 101-141 (190)
92 cd03259 ABC_Carb_Solutes_like 46.2 7.9 0.00017 29.6 0.4 24 109-132 29-52 (213)
93 cd03218 ABC_YhbG The ABC trans 46.1 8 0.00017 29.9 0.4 24 109-132 29-52 (232)
94 cd03255 ABC_MJ0796_Lo1CDE_FtsE 46.1 8 0.00017 29.6 0.4 24 109-132 33-56 (218)
95 PRK14245 phosphate ABC transpo 46.1 7.9 0.00017 30.5 0.4 17 109-125 32-48 (250)
96 PHA03260 Capsid triplex subuni 46.0 34 0.00074 31.1 4.4 79 50-134 7-112 (339)
97 TIGR03608 L_ocin_972_ABC putat 45.9 8.1 0.00018 29.2 0.4 24 109-132 27-50 (206)
98 TIGR01184 ntrCD nitrate transp 45.7 8.1 0.00018 30.3 0.4 24 109-132 14-37 (230)
99 cd03258 ABC_MetN_methionine_tr 45.7 8.1 0.00018 29.9 0.4 24 109-132 34-57 (233)
100 cd03231 ABC_CcmA_heme_exporter 45.4 8.3 0.00018 29.6 0.4 25 109-133 29-53 (201)
101 TIGR03796 NHPM_micro_ABC1 NHPM 45.3 8.1 0.00018 35.3 0.4 29 105-133 504-532 (710)
102 cd03216 ABC_Carb_Monos_I This 44.9 8.6 0.00019 28.8 0.4 25 109-133 29-53 (163)
103 PLN03130 ABC transporter C fam 44.8 8.2 0.00018 39.9 0.4 13 108-120 1267-1279(1622)
104 PRK10418 nikD nickel transport 44.8 8.5 0.00018 30.6 0.4 24 109-132 32-55 (254)
105 PF10662 PduV-EutP: Ethanolami 44.7 8.6 0.00019 30.3 0.4 12 109-120 4-15 (143)
106 cd01363 Motor_domain Myosin an 44.7 11 0.00023 29.2 0.9 13 112-124 30-42 (186)
107 cd03234 ABCG_White The White s 44.7 8.8 0.00019 29.8 0.4 16 109-124 36-51 (226)
108 PRK13652 cbiO cobalt transport 44.6 8.6 0.00019 31.2 0.4 24 109-132 33-56 (277)
109 COG4988 CydD ABC-type transpor 44.3 8.7 0.00019 36.6 0.4 20 104-123 345-364 (559)
110 PRK14249 phosphate ABC transpo 44.2 8.8 0.00019 30.3 0.4 23 110-132 34-56 (251)
111 cd03301 ABC_MalK_N The N-termi 44.2 8.9 0.00019 29.2 0.4 19 109-127 29-47 (213)
112 TIGR02211 LolD_lipo_ex lipopro 44.2 8.9 0.00019 29.4 0.4 24 109-132 34-57 (221)
113 TIGR02204 MsbA_rel ABC transpo 44.1 8.8 0.00019 33.8 0.4 14 108-121 368-381 (576)
114 cd03226 ABC_cobalt_CbiO_domain 43.9 9 0.0002 29.2 0.4 25 109-133 29-53 (205)
115 PRK10744 pstB phosphate transp 43.9 8.9 0.00019 30.6 0.4 17 109-125 42-58 (260)
116 cd03260 ABC_PstB_phosphate_tra 43.8 9.1 0.0002 29.5 0.4 22 109-130 29-50 (227)
117 PRK05541 adenylylsulfate kinas 43.7 9.2 0.0002 28.5 0.4 12 109-120 10-21 (176)
118 COG1124 DppF ABC-type dipeptid 43.7 11 0.00023 32.9 0.8 43 103-151 30-73 (252)
119 TIGR00957 MRP_assoc_pro multi 43.7 8.8 0.00019 39.2 0.4 15 106-120 1312-1326(1522)
120 PF09586 YfhO: Bacterial membr 43.6 78 0.0017 29.5 6.4 86 63-150 711-806 (843)
121 cd03296 ABC_CysA_sulfate_impor 43.5 9.2 0.0002 29.9 0.4 24 109-132 31-54 (239)
122 PRK15177 Vi polysaccharide exp 43.5 9.3 0.0002 29.9 0.4 24 109-132 16-39 (213)
123 TIGR01978 sufC FeS assembly AT 43.4 9.5 0.00021 29.6 0.5 17 109-125 29-45 (243)
124 PRK10522 multidrug transporter 43.4 9 0.0002 34.0 0.4 14 108-121 351-364 (547)
125 PRK14250 phosphate ABC transpo 43.4 9.3 0.0002 30.1 0.4 24 109-132 32-55 (241)
126 cd03214 ABC_Iron-Siderophores_ 43.4 9.4 0.0002 28.8 0.4 23 110-132 29-51 (180)
127 PRK13638 cbiO cobalt transport 43.3 9.2 0.0002 30.8 0.4 25 109-133 30-54 (271)
128 PRK14251 phosphate ABC transpo 43.2 9.3 0.0002 30.0 0.4 16 109-124 33-48 (251)
129 cd03247 ABCC_cytochrome_bd The 43.2 9.4 0.0002 28.6 0.4 24 109-132 31-54 (178)
130 COG1136 SalX ABC-type antimicr 43.0 9.3 0.0002 32.1 0.4 14 110-123 35-48 (226)
131 CHL00131 ycf16 sulfate ABC tra 42.9 9.5 0.00021 29.9 0.4 17 109-125 36-52 (252)
132 TIGR00235 udk uridine kinase. 42.9 9.4 0.0002 29.5 0.4 12 109-120 9-20 (207)
133 PRK14269 phosphate ABC transpo 42.8 9.5 0.00021 30.1 0.4 16 109-124 31-46 (246)
134 PRK14261 phosphate ABC transpo 42.8 9.5 0.00021 30.1 0.4 18 109-126 35-52 (253)
135 TIGR01271 CFTR_protein cystic 42.6 9.4 0.0002 39.0 0.4 16 105-120 1244-1259(1490)
136 PRK13538 cytochrome c biogenes 42.6 9.7 0.00021 29.2 0.4 24 109-132 30-53 (204)
137 cd03249 ABC_MTABC3_MDL1_MDL2 M 42.6 10 0.00022 29.5 0.5 24 109-132 32-55 (238)
138 PRK00300 gmk guanylate kinase; 42.5 10 0.00022 28.7 0.5 12 109-120 8-19 (205)
139 TIGR02315 ABC_phnC phosphonate 42.5 9.8 0.00021 29.6 0.4 24 109-132 31-54 (243)
140 cd01864 Rab19 Rab19 subfamily. 42.5 9.8 0.00021 27.1 0.4 12 109-120 6-17 (165)
141 cd03289 ABCC_CFTR2 The CFTR su 42.4 9.7 0.00021 31.6 0.4 15 108-122 32-46 (275)
142 PRK03846 adenylylsulfate kinas 42.2 9.9 0.00021 29.3 0.4 14 107-120 25-38 (198)
143 PRK15112 antimicrobial peptide 42.2 9.8 0.00021 30.6 0.4 16 109-124 42-57 (267)
144 PRK11231 fecE iron-dicitrate t 42.2 9.9 0.00022 30.1 0.4 17 109-125 31-47 (255)
145 cd00879 Sar1 Sar1 subfamily. 42.2 10 0.00022 27.8 0.4 12 109-120 22-33 (190)
146 PRK10575 iron-hydroxamate tran 42.0 10 0.00022 30.5 0.4 24 109-132 40-63 (265)
147 PRK15093 antimicrobial peptide 42.0 9.8 0.00021 32.1 0.4 21 108-128 35-55 (330)
148 cd01854 YjeQ_engC YjeQ/EngC. 42.0 9.9 0.00021 31.6 0.4 35 78-121 142-176 (287)
149 PRK10908 cell division protein 41.9 10 0.00022 29.3 0.4 25 109-133 31-55 (222)
150 TIGR02857 CydD thiol reductant 41.9 9.9 0.00022 33.3 0.4 29 105-133 347-375 (529)
151 PRK06921 hypothetical protein; 41.8 7 0.00015 32.5 -0.5 18 106-123 117-134 (266)
152 PRK13541 cytochrome c biogenes 41.6 10 0.00022 28.8 0.4 24 109-132 29-52 (195)
153 PRK14239 phosphate transporter 41.6 10 0.00022 29.7 0.4 17 109-125 34-50 (252)
154 cd03230 ABC_DR_subfamily_A Thi 41.6 10 0.00022 28.4 0.4 17 109-125 29-45 (173)
155 TIGR03864 PQQ_ABC_ATP ABC tran 41.6 10 0.00022 29.6 0.4 24 109-132 30-53 (236)
156 cd03217 ABC_FeS_Assembly ABC-t 41.6 10 0.00022 29.1 0.4 16 109-124 29-44 (200)
157 cd03298 ABC_ThiQ_thiamine_tran 41.5 12 0.00026 28.6 0.7 24 109-132 27-50 (211)
158 PRK00454 engB GTP-binding prot 41.5 11 0.00023 27.6 0.5 13 108-120 26-38 (196)
159 PRK14248 phosphate ABC transpo 41.4 10 0.00022 30.4 0.4 16 109-124 50-65 (268)
160 PTZ00243 ABC transporter; Prov 41.4 10 0.00022 39.1 0.4 18 104-121 1334-1351(1560)
161 TIGR02324 CP_lyasePhnL phospho 41.4 10 0.00023 29.2 0.4 24 109-132 37-60 (224)
162 PRK04213 GTP-binding protein; 41.3 10 0.00023 28.2 0.4 12 109-120 12-23 (201)
163 cd03300 ABC_PotA_N PotA is an 41.3 10 0.00023 29.6 0.4 15 109-123 29-43 (232)
164 PRK14242 phosphate transporter 41.3 10 0.00023 29.8 0.4 17 109-125 35-51 (253)
165 cd03277 ABC_SMC5_euk Eukaryoti 41.2 13 0.00028 29.6 0.9 17 105-121 20-38 (213)
166 cd03229 ABC_Class3 This class 41.2 11 0.00023 28.5 0.4 15 109-123 29-43 (178)
167 PRK10771 thiQ thiamine transpo 41.2 11 0.00023 29.5 0.4 25 108-132 27-51 (232)
168 cd00267 ABC_ATPase ABC (ATP-bi 41.1 11 0.00023 27.6 0.4 15 109-123 28-42 (157)
169 cd03256 ABC_PhnC_transporter A 41.1 11 0.00023 29.2 0.4 24 109-132 30-53 (241)
170 PRK11701 phnK phosphonate C-P 40.9 11 0.00023 30.0 0.4 24 109-132 35-58 (258)
171 cd04163 Era Era subfamily. Er 40.9 11 0.00024 25.5 0.4 12 109-120 6-17 (168)
172 PRK14260 phosphate ABC transpo 40.8 11 0.00023 30.1 0.4 17 109-125 36-52 (259)
173 PRK00341 hypothetical protein; 40.8 14 0.00031 26.9 1.0 54 84-141 26-81 (91)
174 PRK13657 cyclic beta-1,2-gluca 40.7 11 0.00023 33.8 0.4 28 105-132 360-387 (588)
175 PRK14240 phosphate transporter 40.7 11 0.00023 29.7 0.4 18 109-126 32-49 (250)
176 cd03238 ABC_UvrA The excision 40.6 11 0.00024 29.6 0.4 16 109-124 24-39 (176)
177 cd03215 ABC_Carb_Monos_II This 40.6 11 0.00024 28.5 0.4 25 109-133 29-53 (182)
178 cd01372 KISc_KIF4 Kinesin moto 40.6 14 0.00031 30.9 1.1 12 112-123 80-91 (341)
179 TIGR00968 3a0106s01 sulfate AB 40.5 11 0.00024 29.7 0.4 18 109-126 29-46 (237)
180 PRK13645 cbiO cobalt transport 40.5 11 0.00023 30.7 0.4 24 109-132 40-63 (289)
181 PRK11629 lolD lipoprotein tran 40.4 11 0.00024 29.4 0.4 24 109-132 38-61 (233)
182 PRK11124 artP arginine transpo 40.4 11 0.00024 29.5 0.4 17 109-125 31-47 (242)
183 PRK13639 cbiO cobalt transport 40.3 11 0.00024 30.6 0.4 25 109-133 31-55 (275)
184 PRK10895 lipopolysaccharide AB 40.3 11 0.00024 29.4 0.4 24 109-132 32-55 (241)
185 PRK10253 iron-enterobactin tra 40.2 11 0.00024 30.2 0.4 24 109-132 36-59 (265)
186 cd03290 ABCC_SUR1_N The SUR do 40.2 13 0.00028 28.7 0.7 25 108-132 29-53 (218)
187 TIGR03005 ectoine_ehuA ectoine 40.1 11 0.00024 29.7 0.4 24 109-132 29-52 (252)
188 TIGR02746 TraC-F-type type-IV 40.1 6.3 0.00014 36.5 -1.1 16 109-124 433-448 (797)
189 PRK10619 histidine/lysine/argi 40.0 11 0.00024 29.9 0.4 24 109-132 34-57 (257)
190 PF13476 AAA_23: AAA domain; P 40.0 12 0.00026 27.0 0.5 11 111-121 24-34 (202)
191 PRK05480 uridine/cytidine kina 39.9 11 0.00025 28.8 0.4 13 109-121 9-21 (209)
192 PF02463 SMC_N: RecF/RecN/SMC 39.9 14 0.00031 28.3 0.9 21 100-120 16-38 (220)
193 PRK13647 cbiO cobalt transport 39.8 11 0.00024 30.7 0.3 25 109-133 34-58 (274)
194 TIGR01189 ccmA heme ABC export 39.8 11 0.00025 28.6 0.4 25 109-133 29-53 (198)
195 PRK14273 phosphate ABC transpo 39.8 11 0.00025 29.7 0.4 19 109-127 36-54 (254)
196 PRK13646 cbiO cobalt transport 39.7 11 0.00025 30.8 0.4 25 109-133 36-60 (286)
197 PRK14267 phosphate ABC transpo 39.6 11 0.00025 29.6 0.4 19 109-127 33-51 (253)
198 PRK13632 cbiO cobalt transport 39.5 11 0.00025 30.3 0.4 24 109-132 38-61 (271)
199 PRK09493 glnQ glutamine ABC tr 39.5 12 0.00025 29.3 0.4 24 109-132 30-53 (240)
200 TIGR03375 type_I_sec_LssB type 39.4 11 0.00025 34.4 0.4 14 107-120 492-505 (694)
201 cd03297 ABC_ModC_molybdenum_tr 39.4 12 0.00025 28.8 0.4 17 108-124 25-41 (214)
202 PRK13547 hmuV hemin importer A 39.4 12 0.00025 30.8 0.4 25 109-133 30-54 (272)
203 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 39.3 12 0.00025 29.4 0.4 24 109-132 51-74 (224)
204 cd03221 ABCF_EF-3 ABCF_EF-3 E 39.3 12 0.00026 27.7 0.4 25 109-133 29-53 (144)
205 COG0218 Predicted GTPase [Gene 39.2 12 0.00025 31.4 0.4 13 108-120 26-38 (200)
206 cd01376 KISc_KID_like Kinesin 39.2 16 0.00034 30.7 1.2 27 98-124 72-99 (319)
207 cd01371 KISc_KIF3 Kinesin moto 39.1 15 0.00033 31.0 1.1 13 112-124 88-100 (333)
208 TIGR03411 urea_trans_UrtD urea 39.1 12 0.00026 29.2 0.4 24 109-132 31-54 (242)
209 PRK09473 oppD oligopeptide tra 39.1 10 0.00023 32.2 0.1 25 108-132 44-68 (330)
210 TIGR02695 azurin azurin. Azuri 39.0 14 0.00031 29.1 0.8 13 43-56 106-118 (125)
211 TIGR03420 DnaA_homol_Hda DnaA 38.8 11 0.00024 28.6 0.2 34 85-123 22-55 (226)
212 cd01866 Rab2 Rab2 subfamily. 38.8 12 0.00026 27.0 0.4 12 109-120 7-18 (168)
213 PRK13548 hmuV hemin importer A 38.8 12 0.00026 30.0 0.4 24 109-132 31-54 (258)
214 PRK14270 phosphate ABC transpo 38.7 12 0.00026 29.5 0.4 19 109-127 33-51 (251)
215 cd03275 ABC_SMC1_euk Eukaryoti 38.6 13 0.00027 29.8 0.5 10 111-120 27-36 (247)
216 smart00382 AAA ATPases associa 38.6 12 0.00027 24.0 0.4 15 109-123 5-19 (148)
217 TIGR02769 nickel_nikE nickel i 38.6 12 0.00026 30.0 0.4 25 109-133 40-64 (265)
218 PRK09580 sufC cysteine desulfu 38.6 12 0.00026 29.1 0.4 18 108-125 29-46 (248)
219 PRK04998 hypothetical protein; 38.5 21 0.00046 25.4 1.6 48 85-136 25-73 (88)
220 PRK13543 cytochrome c biogenes 38.4 12 0.00027 28.9 0.4 25 109-133 40-64 (214)
221 PF00910 RNA_helicase: RNA hel 38.4 11 0.00024 26.6 0.1 13 111-123 3-15 (107)
222 PRK08727 hypothetical protein; 38.3 16 0.00034 29.3 1.0 19 105-123 40-58 (233)
223 PRK14255 phosphate ABC transpo 38.3 12 0.00027 29.4 0.4 16 109-124 34-49 (252)
224 PRK14262 phosphate ABC transpo 38.3 12 0.00027 29.3 0.4 19 109-127 32-50 (250)
225 TIGR01360 aden_kin_iso1 adenyl 38.3 13 0.00028 27.2 0.5 14 109-122 6-19 (188)
226 PRK11022 dppD dipeptide transp 38.3 12 0.00025 31.8 0.3 22 109-130 36-57 (326)
227 PLN03073 ABC transporter F fam 38.2 12 0.00027 35.6 0.5 18 109-126 206-223 (718)
228 COG3839 MalK ABC-type sugar tr 38.2 12 0.00027 33.1 0.4 17 109-125 32-48 (338)
229 cd03276 ABC_SMC6_euk Eukaryoti 38.1 13 0.00027 29.2 0.4 13 110-122 25-37 (198)
230 PRK14247 phosphate ABC transpo 38.1 13 0.00027 29.3 0.4 17 109-125 32-48 (250)
231 PRK09087 hypothetical protein; 38.1 19 0.00041 29.1 1.4 19 106-124 43-62 (226)
232 cd01364 KISc_BimC_Eg5 Kinesin 38.1 17 0.00036 30.9 1.2 23 102-124 77-100 (352)
233 PRK11300 livG leucine/isoleuci 38.1 13 0.00027 29.3 0.4 24 109-132 34-57 (255)
234 cd03222 ABC_RNaseL_inhibitor T 38.0 11 0.00024 29.5 0.1 24 109-132 28-51 (177)
235 PRK11264 putative amino-acid A 38.0 13 0.00027 29.2 0.4 24 109-132 32-55 (250)
236 TIGR02323 CP_lyasePhnK phospho 37.9 13 0.00028 29.3 0.4 25 109-133 32-56 (253)
237 PF13671 AAA_33: AAA domain; P 37.8 13 0.00029 25.9 0.5 11 111-121 4-14 (143)
238 PRK11831 putative ABC transpor 37.8 13 0.00028 30.0 0.4 25 109-133 36-60 (269)
239 TIGR03719 ABC_ABC_ChvD ATP-bin 37.6 13 0.00028 33.3 0.5 17 109-125 34-50 (552)
240 cd04127 Rab27A Rab27a subfamil 37.6 13 0.00029 26.8 0.4 12 109-120 7-18 (180)
241 PF00004 AAA: ATPase family as 37.4 11 0.00023 25.5 -0.1 13 111-123 3-15 (132)
242 PRK13540 cytochrome c biogenes 37.2 13 0.00029 28.3 0.4 23 110-132 31-53 (200)
243 PRK11247 ssuB aliphatic sulfon 37.2 13 0.00029 30.2 0.4 25 109-133 41-65 (257)
244 cd03248 ABCC_TAP TAP, the Tran 37.1 13 0.00029 28.6 0.4 25 109-133 43-67 (226)
245 TIGR01288 nodI ATP-binding ABC 37.0 13 0.00029 30.6 0.4 24 109-132 33-56 (303)
246 PF13481 AAA_25: AAA domain; P 37.0 12 0.00026 27.7 0.2 24 98-121 24-47 (193)
247 PRK13649 cbiO cobalt transport 37.0 13 0.00029 29.9 0.4 25 109-133 36-60 (280)
248 PRK13637 cbiO cobalt transport 36.9 13 0.00028 30.5 0.3 25 109-133 36-60 (287)
249 PRK14252 phosphate ABC transpo 36.9 13 0.00029 29.7 0.4 17 109-125 45-61 (265)
250 TIGR00972 3a0107s01c2 phosphat 36.9 13 0.00029 29.2 0.4 24 109-132 30-53 (247)
251 PRK13636 cbiO cobalt transport 36.9 13 0.00029 30.3 0.4 24 109-132 35-58 (283)
252 PRK09984 phosphonate/organopho 36.8 13 0.00029 29.5 0.4 24 109-132 33-56 (262)
253 PRK13633 cobalt transporter AT 36.8 13 0.00029 30.1 0.4 24 109-132 39-62 (280)
254 PRK11248 tauB taurine transpor 36.6 14 0.00029 29.8 0.4 24 109-132 30-53 (255)
255 PRK14256 phosphate ABC transpo 36.4 14 0.0003 29.2 0.4 15 109-123 33-47 (252)
256 PRK10247 putative ABC transpor 36.4 14 0.0003 28.8 0.4 25 109-133 36-60 (225)
257 TIGR03771 anch_rpt_ABC anchore 36.3 14 0.0003 28.9 0.4 13 109-121 9-21 (223)
258 cd03299 ABC_ModC_like Archeal 36.3 14 0.0003 29.0 0.4 25 109-133 28-52 (235)
259 PF00988 CPSase_sm_chain: Carb 36.3 8.7 0.00019 30.3 -0.7 24 49-72 85-111 (131)
260 PRK14268 phosphate ABC transpo 36.2 14 0.0003 29.4 0.4 20 109-128 41-60 (258)
261 PRK13159 cytochrome c-type bio 36.1 44 0.00095 27.1 3.2 32 58-89 91-128 (155)
262 TIGR03598 GTPase_YsxC ribosome 36.1 15 0.00032 27.3 0.5 13 108-120 20-32 (179)
263 cd03223 ABCD_peroxisomal_ALDP 36.1 14 0.00031 27.7 0.4 24 109-132 30-53 (166)
264 PTZ00132 GTP-binding nuclear p 36.0 14 0.00031 28.2 0.4 15 109-123 12-26 (215)
265 TIGR02203 MsbA_lipidA lipid A 36.0 13 0.00028 32.6 0.2 10 111-120 363-372 (571)
266 PRK14244 phosphate ABC transpo 35.9 14 0.00031 29.1 0.4 15 111-125 36-50 (251)
267 PF01871 AMMECR1: AMMECR1; In 35.9 8.5 0.00018 30.7 -0.9 68 73-147 32-112 (171)
268 cd03271 ABC_UvrA_II The excisi 35.9 15 0.00032 30.8 0.5 11 111-121 26-36 (261)
269 TIGR00958 3a01208 Conjugate Tr 35.8 14 0.0003 34.3 0.4 14 108-121 509-522 (711)
270 cd01365 KISc_KIF1A_KIF1B Kines 35.8 20 0.00043 30.6 1.3 27 98-124 80-107 (356)
271 TIGR02982 heterocyst_DevA ABC 35.8 14 0.00031 28.5 0.4 16 109-124 34-49 (220)
272 cd03233 ABC_PDR_domain1 The pl 35.7 14 0.00031 28.5 0.4 23 109-131 36-58 (202)
273 PRK09544 znuC high-affinity zi 35.7 14 0.00031 29.8 0.4 17 109-125 33-49 (251)
274 cd03244 ABCC_MRP_domain2 Domai 35.7 15 0.00032 28.2 0.4 16 110-125 34-49 (221)
275 cd03295 ABC_OpuCA_Osmoprotecti 35.6 15 0.00032 28.9 0.4 25 109-133 30-54 (242)
276 COG1131 CcmA ABC-type multidru 35.6 14 0.00031 30.9 0.4 23 110-132 35-57 (293)
277 PRK14265 phosphate ABC transpo 35.5 15 0.00032 29.9 0.4 19 109-127 49-67 (274)
278 COG1123 ATPase components of v 35.2 14 0.0003 35.1 0.3 26 107-132 36-61 (539)
279 TIGR02314 ABC_MetN D-methionin 35.2 15 0.00032 31.8 0.4 24 109-132 34-57 (343)
280 cd01374 KISc_CENP_E Kinesin mo 35.1 18 0.00039 30.3 0.9 27 98-124 65-92 (321)
281 PRK15056 manganese/iron transp 35.1 15 0.00032 29.7 0.4 16 109-124 36-51 (272)
282 PRK13650 cbiO cobalt transport 35.0 15 0.00032 30.0 0.4 25 109-133 36-60 (279)
283 PF01796 DUF35: DUF35 OB-fold 35.0 57 0.0012 21.6 3.2 34 115-149 5-41 (68)
284 PRK14272 phosphate ABC transpo 35.0 15 0.00033 28.8 0.4 20 109-128 33-52 (252)
285 PRK11153 metN DL-methionine tr 34.9 15 0.00032 31.3 0.4 24 109-132 34-57 (343)
286 PRK15079 oligopeptide ABC tran 34.9 15 0.00032 31.3 0.4 24 109-132 50-73 (331)
287 TIGR03740 galliderm_ABC gallid 34.8 15 0.00033 28.3 0.4 25 109-133 29-53 (223)
288 PRK14235 phosphate transporter 34.8 15 0.00033 29.6 0.4 19 109-127 48-66 (267)
289 cd01369 KISc_KHC_KIF5 Kinesin 34.7 21 0.00045 29.9 1.2 26 99-124 69-95 (325)
290 cd03268 ABC_BcrA_bacitracin_re 34.7 15 0.00034 27.9 0.4 23 110-132 30-52 (208)
291 PRK15134 microcin C ABC transp 34.6 15 0.00032 32.6 0.4 24 109-132 38-61 (529)
292 PRK14259 phosphate ABC transpo 34.6 15 0.00033 29.7 0.4 17 109-125 42-58 (269)
293 COG0488 Uup ATPase components 34.6 15 0.00032 34.2 0.4 17 109-125 32-48 (530)
294 cd03237 ABC_RNaseL_inhibitor_d 34.5 15 0.00033 29.7 0.4 25 109-133 28-52 (246)
295 KOG3886|consensus 34.5 22 0.00047 31.9 1.3 14 108-121 6-19 (295)
296 PRK14237 phosphate transporter 34.4 15 0.00034 29.5 0.4 18 109-126 49-66 (267)
297 PRK11308 dppF dipeptide transp 34.4 15 0.00033 31.2 0.4 25 109-133 44-68 (327)
298 PRK13641 cbiO cobalt transport 34.4 15 0.00033 30.0 0.4 24 109-132 36-59 (287)
299 cd01878 HflX HflX subfamily. 34.2 16 0.00034 27.4 0.4 13 108-120 43-55 (204)
300 cd03240 ABC_Rad50 The catalyti 34.2 16 0.00035 28.6 0.5 15 110-124 26-40 (204)
301 cd03245 ABCC_bacteriocin_expor 34.1 16 0.00035 28.0 0.4 24 109-132 33-56 (220)
302 PRK09270 nucleoside triphospha 34.1 16 0.00034 28.9 0.4 13 109-121 36-48 (229)
303 COG1125 OpuBA ABC-type proline 34.0 16 0.00035 32.9 0.5 16 109-124 30-45 (309)
304 PRK08181 transposase; Validate 34.0 22 0.00048 30.0 1.3 19 104-122 104-122 (269)
305 PRK14266 phosphate ABC transpo 33.9 16 0.00035 28.7 0.4 15 109-123 32-46 (250)
306 TIGR01277 thiQ thiamine ABC tr 33.9 16 0.00035 28.1 0.4 15 109-123 27-41 (213)
307 KOG1068|consensus 33.9 25 0.00054 30.6 1.6 13 143-155 51-63 (245)
308 cd03236 ABC_RNaseL_inhibitor_d 33.9 16 0.00035 29.9 0.4 25 109-133 29-53 (255)
309 cd00009 AAA The AAA+ (ATPases 33.8 17 0.00037 23.8 0.4 17 106-122 19-35 (151)
310 cd04154 Arl2 Arl2 subfamily. 33.8 17 0.00036 26.4 0.5 12 109-120 17-28 (173)
311 PF00337 Gal-bind_lectin: Gala 33.8 59 0.0013 23.4 3.3 13 117-129 81-93 (133)
312 PRK13643 cbiO cobalt transport 33.8 15 0.00033 30.1 0.3 25 109-133 35-59 (288)
313 cd03232 ABC_PDR_domain2 The pl 33.8 17 0.00036 27.8 0.5 18 109-126 36-53 (192)
314 PRK13648 cbiO cobalt transport 33.7 16 0.00035 29.3 0.4 17 109-125 38-54 (269)
315 PRK11614 livF leucine/isoleuci 33.6 16 0.00036 28.4 0.4 24 109-132 34-57 (237)
316 PRK14274 phosphate ABC transpo 33.5 16 0.00035 29.0 0.4 16 109-124 41-56 (259)
317 PRK03695 vitamin B12-transport 33.4 17 0.00036 29.0 0.4 17 109-125 25-41 (248)
318 cd03250 ABCC_MRP_domain1 Domai 33.4 17 0.00037 27.7 0.4 24 109-132 34-57 (204)
319 PF13191 AAA_16: AAA ATPase do 33.3 16 0.00034 26.3 0.2 17 107-123 25-41 (185)
320 PRK13644 cbiO cobalt transport 33.2 17 0.00036 29.6 0.4 18 109-126 31-48 (274)
321 PRK10789 putative multidrug tr 32.8 17 0.00037 32.6 0.4 26 108-133 343-368 (569)
322 cd03241 ABC_RecN RecN ATPase i 32.8 18 0.00039 29.6 0.5 12 110-121 25-36 (276)
323 PRK10751 molybdopterin-guanine 32.7 16 0.00034 29.3 0.2 13 109-121 9-21 (173)
324 PF10236 DAP3: Mitochondrial r 32.6 13 0.00028 31.5 -0.3 28 97-124 12-41 (309)
325 PRK13796 GTPase YqeH; Provisio 32.4 41 0.00088 29.2 2.6 39 77-120 136-174 (365)
326 TIGR01846 type_I_sec_HlyB type 32.3 17 0.00038 33.3 0.4 15 107-121 484-498 (694)
327 TIGR01188 drrA daunorubicin re 32.3 18 0.00038 29.9 0.4 25 109-133 22-46 (302)
328 PRK11160 cysteine/glutathione 32.2 17 0.00038 32.6 0.4 26 108-133 368-393 (574)
329 cd03239 ABC_SMC_head The struc 32.2 18 0.0004 28.0 0.5 10 111-120 27-36 (178)
330 cd03252 ABCC_Hemolysin The ABC 32.1 18 0.00039 28.1 0.4 24 109-132 31-54 (237)
331 PRK11000 maltose/maltodextrin 31.9 18 0.00038 31.3 0.3 25 109-133 32-56 (369)
332 cd03246 ABCC_Protease_Secretio 31.8 18 0.0004 27.0 0.4 24 109-132 31-54 (173)
333 TIGR01192 chvA glucan exporter 31.8 18 0.00039 32.7 0.4 24 109-132 364-387 (585)
334 PRK13642 cbiO cobalt transport 31.8 20 0.00044 29.1 0.7 25 109-133 36-60 (277)
335 cd01370 KISc_KIP3_like Kinesin 31.8 25 0.00054 29.9 1.2 25 99-123 80-105 (338)
336 TIGR03265 PhnT2 putative 2-ami 31.7 18 0.00039 31.2 0.4 24 109-132 33-56 (353)
337 cd01368 KISc_KIF23_like Kinesi 31.7 26 0.00056 30.0 1.3 26 99-124 81-107 (345)
338 smart00129 KISc Kinesin motor, 31.6 26 0.00056 29.2 1.3 25 100-124 73-98 (335)
339 TIGR01842 type_I_sec_PrtD type 31.6 18 0.00039 32.1 0.4 26 108-133 346-371 (544)
340 PRK15064 ABC transporter ATP-b 31.5 19 0.0004 32.0 0.5 24 109-132 30-53 (530)
341 PRK13546 teichoic acids export 31.5 18 0.0004 29.6 0.4 25 109-133 53-77 (264)
342 PRK10419 nikE nickel transport 31.5 19 0.0004 29.2 0.4 24 109-132 41-64 (268)
343 TIGR03873 F420-0_ABC_ATP propo 31.4 19 0.00041 28.6 0.4 24 109-132 30-53 (256)
344 cd01867 Rab8_Rab10_Rab13_like 31.3 19 0.00041 25.9 0.4 12 109-120 6-17 (167)
345 PRK10261 glutathione transport 31.2 18 0.00038 33.3 0.3 24 109-132 45-68 (623)
346 cd01850 CDC_Septin CDC/Septin. 31.2 19 0.00042 29.9 0.5 12 109-120 7-18 (276)
347 cd01367 KISc_KIF2_like Kinesin 31.1 25 0.00054 29.7 1.1 39 83-124 64-103 (322)
348 cd02019 NK Nucleoside/nucleoti 31.0 20 0.00043 23.6 0.4 11 111-121 4-14 (69)
349 cd03267 ABC_NatA_like Similar 31.0 19 0.00042 28.4 0.4 16 110-125 51-66 (236)
350 PRK13634 cbiO cobalt transport 31.0 19 0.0004 29.7 0.3 24 109-132 36-59 (290)
351 PRK14264 phosphate ABC transpo 30.9 19 0.00041 29.9 0.4 16 110-125 75-90 (305)
352 PRK14253 phosphate ABC transpo 30.9 19 0.00042 28.2 0.4 17 109-125 32-48 (249)
353 TIGR00635 ruvB Holliday juncti 30.9 20 0.00043 28.8 0.5 33 90-122 14-46 (305)
354 cd00071 GMPK Guanosine monopho 30.9 19 0.00042 26.5 0.4 11 111-121 4-14 (137)
355 cd03254 ABCC_Glucan_exporter_l 30.9 19 0.00042 27.7 0.4 24 110-133 33-56 (229)
356 cd03288 ABCC_SUR2 The SUR doma 30.8 19 0.00042 28.7 0.4 14 110-123 51-64 (257)
357 PRK14258 phosphate ABC transpo 30.8 19 0.00042 28.8 0.4 24 109-132 36-59 (261)
358 cd03253 ABCC_ATM1_transporter 30.7 19 0.00042 27.8 0.4 25 109-133 30-54 (236)
359 PRK13651 cobalt transporter AT 30.7 19 0.00041 30.2 0.4 24 109-132 36-59 (305)
360 PRK11819 putative ABC transpor 30.6 20 0.00043 32.3 0.5 17 109-125 36-52 (556)
361 cd04153 Arl5_Arl8 Arl5/Arl8 su 30.5 20 0.00044 26.3 0.5 12 109-120 18-29 (174)
362 PF13401 AAA_22: AAA domain; P 30.5 21 0.00045 24.5 0.5 13 110-122 8-20 (131)
363 PRK14254 phosphate ABC transpo 30.5 20 0.00042 29.5 0.4 17 109-125 68-84 (285)
364 cd03294 ABC_Pro_Gly_Bertaine T 30.2 20 0.00044 29.0 0.4 24 110-133 54-77 (269)
365 PRK13631 cbiO cobalt transport 30.2 20 0.00043 30.4 0.4 25 108-132 54-78 (320)
366 PRK05057 aroK shikimate kinase 30.1 20 0.00044 27.3 0.4 12 109-120 7-18 (172)
367 PRK10938 putative molybdenum t 30.1 20 0.00043 31.3 0.4 16 109-124 32-47 (490)
368 cd07302 CHD cyclase homology d 30.1 1.6E+02 0.0035 20.5 5.0 83 19-136 28-110 (177)
369 PRK13635 cbiO cobalt transport 30.0 20 0.00043 29.3 0.4 25 109-133 36-60 (279)
370 COG1484 DnaC DNA replication p 29.9 22 0.00048 29.4 0.6 17 105-121 104-120 (254)
371 TIGR01186 proV glycine betaine 29.9 19 0.00042 31.5 0.3 25 109-133 22-46 (363)
372 PRK14243 phosphate transporter 29.9 21 0.00045 28.8 0.4 17 109-125 39-55 (264)
373 cd05721 IgV_CTLA-4 Immunoglobu 29.9 2.6E+02 0.0057 21.5 7.4 77 32-128 4-81 (115)
374 PRK14236 phosphate transporter 29.8 20 0.00044 28.9 0.4 17 109-125 54-70 (272)
375 TIGR03596 GTPase_YlqF ribosome 29.8 36 0.00077 28.0 1.8 44 77-121 80-133 (276)
376 PF07475 Hpr_kinase_C: HPr Ser 29.7 21 0.00046 29.1 0.5 11 110-120 22-32 (171)
377 TIGR00991 3a0901s02IAP34 GTP-b 29.6 20 0.00044 31.6 0.4 12 111-122 43-54 (313)
378 cd04116 Rab9 Rab9 subfamily. 29.6 21 0.00046 25.5 0.4 12 109-120 8-19 (170)
379 COG4172 ABC-type uncharacteriz 29.5 28 0.0006 33.4 1.2 14 107-120 314-327 (534)
380 PF04763 DUF562: Protein of un 29.5 30 0.00066 28.3 1.3 17 110-126 68-84 (146)
381 PF10738 Lpp-LpqN: Probable li 29.4 1.6E+02 0.0034 23.9 5.3 123 25-147 8-170 (175)
382 COG1117 PstB ABC-type phosphat 29.4 21 0.00046 31.4 0.4 11 110-120 37-47 (253)
383 cd03251 ABCC_MsbA MsbA is an e 29.2 21 0.00047 27.5 0.4 25 109-133 31-55 (234)
384 PRK13549 xylose transporter AT 29.1 21 0.00046 31.4 0.4 24 109-132 34-57 (506)
385 PRK10982 galactose/methyl gala 29.0 21 0.00046 31.2 0.4 24 109-132 27-50 (491)
386 cd00106 KISc Kinesin motor dom 28.9 33 0.0007 28.4 1.4 25 100-124 72-97 (328)
387 cd03291 ABCC_CFTR1 The CFTR su 28.9 22 0.00047 29.7 0.4 25 109-133 66-90 (282)
388 PRK08903 DnaA regulatory inact 28.8 24 0.00052 27.3 0.6 33 86-122 26-58 (227)
389 PRK14275 phosphate ABC transpo 28.6 22 0.00048 29.2 0.4 17 109-125 68-84 (286)
390 CHL00197 carA carbamoyl-phosph 28.6 17 0.00036 32.7 -0.4 24 49-72 89-115 (382)
391 cd01373 KISc_KLP2_like Kinesin 28.4 30 0.00066 29.4 1.2 22 103-124 71-93 (337)
392 smart00276 GLECT Galectin. Gal 28.4 77 0.0017 23.2 3.2 13 117-129 75-87 (128)
393 TIGR02633 xylG D-xylose ABC tr 28.3 22 0.00049 31.1 0.4 24 109-132 30-53 (500)
394 PRK14271 phosphate ABC transpo 28.3 23 0.00049 28.9 0.4 15 110-124 51-65 (276)
395 COG0194 Gmk Guanylate kinase [ 28.2 47 0.001 27.9 2.2 25 109-133 7-42 (191)
396 COG4172 ABC-type uncharacteriz 28.1 24 0.00053 33.7 0.6 21 102-122 32-52 (534)
397 PRK09700 D-allose transporter 28.1 23 0.00049 31.2 0.4 24 109-132 34-57 (510)
398 cd01375 KISc_KIF9_like Kinesin 28.1 29 0.00063 29.4 1.0 13 112-124 87-99 (334)
399 PRK10851 sulfate/thiosulfate t 28.1 23 0.0005 30.6 0.4 25 109-133 31-55 (353)
400 PRK13640 cbiO cobalt transport 28.0 23 0.00049 29.0 0.4 24 109-132 36-59 (282)
401 cd01366 KISc_C_terminal Kinesi 28.0 30 0.00065 28.9 1.1 13 112-124 84-96 (329)
402 PTZ00265 multidrug resistance 28.0 22 0.00048 36.6 0.4 13 108-120 1196-1208(1466)
403 PRK11650 ugpC glycerol-3-phosp 27.9 23 0.00049 30.6 0.3 25 109-133 33-57 (356)
404 PRK13537 nodulation ABC transp 27.8 23 0.00051 29.5 0.4 25 109-133 36-60 (306)
405 PRK11144 modC molybdate transp 27.8 23 0.0005 30.2 0.4 25 109-133 27-51 (352)
406 PRK06835 DNA replication prote 27.4 24 0.00051 30.7 0.4 30 93-122 166-199 (329)
407 PRK14263 phosphate ABC transpo 27.4 28 0.0006 28.1 0.7 17 109-125 37-53 (261)
408 COG0444 DppD ABC-type dipeptid 27.2 29 0.00063 30.9 0.9 20 105-124 30-49 (316)
409 cd01130 VirB11-like_ATPase Typ 27.2 24 0.00053 26.9 0.4 27 99-125 18-44 (186)
410 PRK11432 fbpC ferric transport 27.1 24 0.00052 30.5 0.4 26 109-134 35-60 (351)
411 TIGR02142 modC_ABC molybdenum 27.1 24 0.00053 30.0 0.4 25 109-133 26-50 (354)
412 TIGR03744 traC_PFL_4706 conjug 26.9 14 0.0003 35.9 -1.2 16 109-124 478-493 (893)
413 PRK10636 putative ABC transpor 26.8 25 0.00055 32.5 0.5 24 109-132 30-53 (638)
414 TIGR02770 nickel_nikD nickel i 26.8 25 0.00055 27.4 0.4 24 109-132 15-38 (230)
415 TIGR00929 VirB4_CagE type IV s 26.8 22 0.00047 32.7 0.0 15 109-123 437-451 (785)
416 PLN03133 beta-1,3-galactosyltr 26.8 61 0.0013 31.4 3.0 23 117-148 302-324 (636)
417 TIGR01368 CPSaseIIsmall carbam 26.6 18 0.00039 32.1 -0.5 25 49-73 83-110 (358)
418 PF02221 E1_DerP2_DerF2: ML do 26.5 1.3E+02 0.0028 21.2 4.0 33 115-147 28-60 (134)
419 PRK11147 ABC transporter ATPas 26.5 25 0.00055 32.3 0.4 24 109-132 32-55 (635)
420 TIGR03015 pepcterm_ATPase puta 26.4 26 0.00056 27.3 0.4 35 90-124 26-61 (269)
421 PRK06526 transposase; Provisio 26.4 29 0.00064 28.8 0.7 18 105-122 97-114 (254)
422 TIGR03269 met_CoM_red_A2 methy 26.3 26 0.00056 31.0 0.4 24 110-133 314-337 (520)
423 smart00178 SAR Sar1p-like memb 26.2 27 0.00058 26.1 0.5 12 109-120 20-31 (184)
424 TIGR03258 PhnT 2-aminoethylpho 26.1 26 0.00056 30.5 0.4 25 109-133 34-58 (362)
425 cd03213 ABCG_EPDR ABCG transpo 26.1 27 0.00058 26.8 0.4 21 109-129 38-58 (194)
426 PRK09183 transposase/IS protei 26.1 25 0.00054 29.0 0.3 35 83-122 84-118 (259)
427 TIGR01194 cyc_pep_trnsptr cycl 26.0 26 0.00056 31.4 0.4 14 108-121 370-383 (555)
428 PRK00153 hypothetical protein; 25.9 47 0.001 24.2 1.7 21 98-118 18-38 (104)
429 PF06519 TolA: TolA C-terminal 25.9 31 0.00067 25.3 0.7 28 70-97 44-72 (96)
430 PRK10738 hypothetical protein; 25.9 55 0.0012 24.8 2.1 23 102-124 4-26 (134)
431 PRK00889 adenylylsulfate kinas 25.8 27 0.00059 25.9 0.4 13 109-121 7-19 (175)
432 PRK15439 autoinducer 2 ABC tra 25.8 27 0.00058 31.0 0.4 25 109-133 40-64 (510)
433 PRK13536 nodulation factor exp 25.7 27 0.00058 30.0 0.4 24 109-132 70-93 (340)
434 cd02034 CooC The accessory pro 25.6 24 0.00052 25.9 0.1 13 110-122 3-15 (116)
435 TIGR03415 ABC_choXWV_ATP choli 25.6 26 0.00056 31.0 0.3 25 109-133 53-77 (382)
436 PF06309 Torsin: Torsin; Inte 25.6 27 0.00058 27.3 0.4 15 109-123 56-70 (127)
437 COG1162 Predicted GTPases [Gen 25.5 26 0.00057 30.9 0.3 12 109-120 167-178 (301)
438 COG3168 PilP Tfp pilus assembl 25.4 61 0.0013 27.1 2.4 19 65-84 109-127 (170)
439 PRK10762 D-ribose transporter 25.3 27 0.00059 30.7 0.4 24 109-132 33-56 (501)
440 TIGR00455 apsK adenylylsulfate 25.3 28 0.00061 26.1 0.4 12 109-120 21-32 (184)
441 cd03369 ABCC_NFT1 Domain 2 of 25.3 32 0.00069 26.2 0.7 17 109-125 37-53 (207)
442 KOG0057|consensus 25.2 28 0.0006 33.8 0.5 13 108-120 380-392 (591)
443 cd01892 Miro2 Miro2 subfamily. 25.2 28 0.0006 25.6 0.4 12 109-120 7-18 (169)
444 cd03228 ABCC_MRP_Like The MRP 25.1 28 0.00062 26.0 0.4 15 109-123 31-45 (171)
445 PRK13150 cytochrome c-type bio 25.1 88 0.0019 25.5 3.2 37 58-94 97-141 (159)
446 cd00844 MPP_Dbr1_N Dbr1 RNA la 25.1 61 0.0013 27.3 2.4 43 79-121 77-128 (262)
447 PRK12838 carbamoyl phosphate s 25.0 15 0.00034 32.4 -1.2 48 48-95 84-145 (354)
448 PLN03118 Rab family protein; P 24.9 28 0.00062 26.5 0.4 13 109-121 17-29 (211)
449 TIGR03238 dnd_assoc_3 dnd syst 24.7 28 0.00061 32.9 0.4 16 109-124 35-50 (504)
450 PF04359 DUF493: Protein of un 24.7 44 0.00096 23.2 1.3 42 84-128 19-61 (85)
451 PRK00149 dnaA chromosomal repl 24.7 42 0.00092 29.4 1.5 26 98-123 140-165 (450)
452 PRK06547 hypothetical protein; 24.6 29 0.00063 27.0 0.4 11 111-121 20-30 (172)
453 PF07705 CARDB: CARDB; InterP 24.4 2.1E+02 0.0045 18.6 5.6 77 48-148 9-86 (101)
454 PRK10261 glutathione transport 24.3 29 0.00063 31.9 0.4 23 110-132 354-376 (623)
455 COG1122 CbiO ABC-type cobalt t 24.3 30 0.00064 28.8 0.4 26 109-134 33-58 (235)
456 PRK13764 ATPase; Provisional 24.2 1.9E+02 0.0041 27.8 5.7 95 18-123 175-274 (602)
457 PRK06696 uridine kinase; Valid 24.1 27 0.00057 27.5 0.1 10 112-121 28-37 (223)
458 PF14756 Pdase_C33_assoc: Pept 24.0 44 0.00095 27.2 1.3 9 1-9 23-31 (147)
459 PRK00131 aroK shikimate kinase 23.7 33 0.0007 24.5 0.5 12 110-121 8-19 (175)
460 PF08512 Rtt106: Histone chape 23.7 1.7E+02 0.0037 20.9 4.2 15 115-129 48-62 (95)
461 cd01129 PulE-GspE PulE/GspE Th 23.7 1.2E+02 0.0026 25.2 3.8 84 63-152 31-121 (264)
462 PF01695 IstB_IS21: IstB-like 23.5 32 0.0007 26.8 0.5 16 106-121 47-62 (178)
463 PF13175 AAA_15: AAA ATPase do 23.5 33 0.00071 28.0 0.5 12 110-121 26-37 (415)
464 PLN00223 ADP-ribosylation fact 23.4 33 0.0007 25.9 0.4 12 109-120 20-31 (181)
465 PRK03881 hypothetical protein; 23.2 50 0.0011 29.8 1.6 70 71-147 332-415 (467)
466 PRK00089 era GTPase Era; Revie 23.2 32 0.0007 27.7 0.4 12 109-120 8-19 (292)
467 PF00101 RuBisCO_small: Ribulo 23.1 76 0.0017 23.8 2.4 20 20-39 59-78 (99)
468 COG4608 AppF ABC-type oligopep 23.0 33 0.00071 30.0 0.4 19 108-126 41-59 (268)
469 PRK13165 cytochrome c-type bio 23.0 1E+02 0.0022 25.2 3.2 33 58-90 97-136 (160)
470 PRK09452 potA putrescine/sperm 22.6 33 0.00071 30.1 0.4 24 109-132 43-66 (375)
471 COG4451 RbcS Ribulose bisphosp 22.6 71 0.0015 25.7 2.2 21 19-39 66-86 (127)
472 TIGR02168 SMC_prok_B chromosom 22.4 37 0.00079 31.6 0.6 14 110-123 27-40 (1179)
473 PRK11288 araG L-arabinose tran 22.3 34 0.00073 30.1 0.4 24 109-132 33-56 (501)
474 PRK10070 glycine betaine trans 22.3 31 0.00066 30.7 0.1 25 109-133 57-81 (400)
475 PRK13721 conjugal transfer ATP 22.3 31 0.00066 33.2 0.1 17 108-124 451-467 (844)
476 cd03242 ABC_RecF RecF is a rec 22.0 36 0.00077 27.7 0.4 10 111-120 26-35 (270)
477 PLN03110 Rab GTPase; Provision 22.0 35 0.00076 26.5 0.4 13 108-120 14-26 (216)
478 PRK08233 hypothetical protein; 22.0 36 0.00078 24.7 0.4 10 111-120 8-17 (182)
479 PRK01889 GTPase RsgA; Reviewed 22.0 41 0.0009 29.1 0.9 17 107-123 196-212 (356)
480 COG1493 HprK Serine kinase of 22.0 37 0.0008 30.5 0.6 11 110-120 149-159 (308)
481 PF01580 FtsK_SpoIIIE: FtsK/Sp 21.9 34 0.00074 26.0 0.3 17 108-124 40-56 (205)
482 cd08898 SRPBCC_CalC_Aha1-like_ 21.8 1.7E+02 0.0038 20.2 3.8 20 64-83 92-111 (145)
483 PRK12377 putative replication 21.8 31 0.00066 28.8 0.0 18 105-122 100-117 (248)
484 PRK13873 conjugal transfer ATP 21.7 30 0.00064 33.0 -0.1 17 109-125 444-460 (811)
485 cd04149 Arf6 Arf6 subfamily. 21.5 43 0.00094 24.7 0.8 13 108-120 11-23 (168)
486 PF13238 AAA_18: AAA domain; P 21.4 39 0.00085 22.7 0.5 9 112-120 4-12 (129)
487 PLN02771 carbamoyl-phosphate s 21.4 23 0.0005 32.4 -0.8 24 49-72 139-165 (415)
488 PF08477 Miro: Miro-like prote 21.1 35 0.00075 23.0 0.2 10 111-120 4-13 (119)
489 cd00046 DEXDc DEAD-like helica 21.1 46 0.00099 21.5 0.7 14 109-122 3-16 (144)
490 PF00580 UvrD-helicase: UvrD/R 21.1 21 0.00045 27.7 -1.0 18 107-124 14-31 (315)
491 PRK09774 fec operon regulator 21.0 1.4E+02 0.0031 25.3 3.8 15 71-85 122-136 (319)
492 TIGR01997 sufA_proteo FeS asse 20.9 32 0.00069 24.8 -0.1 18 106-123 90-107 (107)
493 cd00070 GLECT Galectin/galacto 20.8 1.3E+02 0.0028 21.8 3.1 14 117-130 76-89 (127)
494 PRK02047 hypothetical protein; 20.8 36 0.00078 24.7 0.2 53 84-139 25-79 (91)
495 PLN03071 GTP-binding nuclear p 20.7 39 0.00084 26.5 0.4 13 109-121 16-28 (219)
496 KOG0951|consensus 20.6 66 0.0014 34.6 2.1 84 39-122 1080-1175(1674)
497 PF13889 Chromosome_seg: Chrom 20.6 1.5E+02 0.0033 20.6 3.2 42 108-153 8-53 (56)
498 cd04152 Arl4_Arl7 Arl4/Arl7 su 20.6 40 0.00087 25.1 0.4 12 109-120 6-17 (183)
499 PRK05428 HPr kinase/phosphoryl 20.3 41 0.00088 29.7 0.5 12 109-120 149-160 (308)
500 COG4181 Predicted ABC-type tra 20.3 51 0.0011 28.6 1.0 19 104-122 34-52 (228)
No 1
>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....
Probab=100.00 E-value=2e-93 Score=555.58 Aligned_cols=133 Identities=74% Similarity=1.139 Sum_probs=116.8
Q ss_pred HHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEEeecCCCCeEEEEeecCCCccchhcchhhhhhhcc
Q psy13769 23 FAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQ 102 (155)
Q Consensus 23 ~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL~~VpDGT~Vtv~AGNDEn~~aELRN~tavmknq 102 (155)
.|+++|+|+||+||||+||||+|+||+||+|||||||||.+||||||+||||||+|||+|||||||||||||++|+||||
T Consensus 1 er~~~~~l~~~~~~lv~T~sP~~lcs~LP~HWR~NKsLP~~FkVvalg~V~DGT~Vtv~AGNDEn~~aElRN~tavmknq 80 (135)
T PF00853_consen 1 ERTLHEALAEHPGELVRTDSPNFLCSVLPSHWRSNKSLPVAFKVVALGDVPDGTLVTVMAGNDENYCAELRNATAVMKNQ 80 (135)
T ss_dssp ---HHHHHHHSTCCEEECSSTTEEEES-TSEEETTSS-SS-EEEEESSS-STTEEEEEEEEESSCSSBBEES-EEEEETT
T ss_pred CccHHHHHHhCCcccccCCCCCEEeecccccccccCCCCCceeEEEEEEcCCCcEEEEEecCCchhhhhhhchhhhhhcc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeeeccCCCceeEEEEEEecCCceeeeeeeeeEEeeeCCCCCCCCC
Q psy13769 103 VAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPREPRSKS 155 (155)
Q Consensus 103 vA~FNDLRFvGRSGRGKsftltItv~t~Ppqvaty~~AIKVTVDGPRePR~k~ 155 (155)
|||||||||||||||||||+|||+|+|+|||||||+||||||||||||||+|+
T Consensus 81 vA~FnDLRFvGRSGRGKsFtltItv~t~PpqvAty~~AIKVTVDGPRePR~~~ 133 (135)
T PF00853_consen 81 VARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREPRSKR 133 (135)
T ss_dssp EEEESS-EECST-TTTSEEEEEEEE-SSS-EEEEECCEEEEESS-SSCCG---
T ss_pred cccccccccccccCCccceEEEEEEeCCCchHHhheeeEEEEecCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999974
No 2
>KOG3982|consensus
Probab=100.00 E-value=4.2e-87 Score=591.08 Aligned_cols=134 Identities=75% Similarity=1.154 Sum_probs=132.2
Q ss_pred hHHHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEEeecCCCCeEEEEeecCCCccchhcchhhhhhh
Q psy13769 21 DMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVK 100 (155)
Q Consensus 21 ~~~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL~~VpDGT~Vtv~AGNDEn~~aELRN~tavmk 100 (155)
.++|+|+|+|+|||||||+||||+||||+||+|||||||||+||||||||||||||+||||||||||||||||||+|+||
T Consensus 96 ~~~rt~~~~laehpgeLvrT~SPn~lcs~LP~HWRsNKtlp~aFkVvaLgdVpDgT~Vti~aGNDEnyc~ElRN~tA~mk 175 (475)
T KOG3982|consen 96 LVFRTVVEFLAEHPGELVRTSSPNFLCSVLPTHWRSNKTLPVAFKVVALGDVPDGTLVTIMAGNDENYCAELRNCTAVMK 175 (475)
T ss_pred hhHHHHHHHHHhCccceeecCCCceeeecCcchhccCCcccceeEEEEecccCCCcEEEEEecCCcchhHHhhhhHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeeeeccCCCceeEEEEEEecCCceeeeeeeeeEEeeeCCCCCC-CC
Q psy13769 101 NQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPREPR-SK 154 (155)
Q Consensus 101 nqvA~FNDLRFvGRSGRGKsftltItv~t~Ppqvaty~~AIKVTVDGPRePR-~k 154 (155)
|||||||||||||||||||||||||+|+|+|+|||||+|||||||||||||| +|
T Consensus 176 nQVAkFNDLRFVGRSGRGKsFtLTIti~TnP~qvATy~kaIKVTVDGPRepRr~K 230 (475)
T KOG3982|consen 176 NQVAKFNDLRFVGRSGRGKSFTLTITIFTNPPQVATYHKAIKVTVDGPREPRRSK 230 (475)
T ss_pred hhhhhhccceeecccCCCcceEEEEEEecCCcceeeeeceEEEeccCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999 44
No 3
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=89.06 E-value=2.4 Score=35.48 Aligned_cols=104 Identities=18% Similarity=0.297 Sum_probs=64.5
Q ss_pred cchhHHHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEEeec--CCCCe-EEEEeecCCCccchh---
Q psy13769 18 MTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDD--VMDGT-IVTIRAGNDDNYCGE--- 91 (155)
Q Consensus 18 ~~~~~~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL~~--VpDGT-~Vtv~AGNDEn~~aE--- 91 (155)
++.+.++.+.+.++...|.-+-.++|.+-+. || ...+|-+..+ .+.|+ .++|+--+..+++-+
T Consensus 34 ~~~~~l~~~~~~l~~~~~~~l~~~~p~~~~~-l~----------~g~Rv~~~~~p~~~~~~~~i~IRk~~~~~~sl~~l~ 102 (308)
T TIGR02788 34 LTFSHLMRLARAIASFSKQSISEENPILSAT-LP----------GGERVQIVIPPACENDTVSITIRKPSLVDFSLDDYE 102 (308)
T ss_pred CCHHHHHHHHHHHHHHhCCcccCCCceEEEE-CC----------CCeEEEEECCCcccCCCceEEEECCCCCCCCHHHHH
Confidence 4667888888888888887777899988877 34 3446666543 45566 888888776665422
Q ss_pred ---------------------cch------hhhhhhcccccccceeeeeccCCCceeEEEEEEecCCc
Q psy13769 92 ---------------------LRN------CTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 92 ---------------------LRN------~tavmknqvA~FNDLRFvGRSGRGKsftltItv~t~Pp 132 (155)
|.. -...++..+..=.-+=++|.+|+||+=.+..-+.--|+
T Consensus 103 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 103 EKGFFDTVRAQSGTLSDNDEQLLELLDAGDIKEFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred HcCCcccccccccccchhhHHHHHhhhhHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCc
Confidence 110 11122233333345678999999998655433333343
No 4
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=84.20 E-value=0.93 Score=33.27 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=23.0
Q ss_pred EEEeecCCCccchhcchhhhhhhccccccccee--eeeccCCCce
Q psy13769 78 VTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLR--FVGRSGRGKS 120 (155)
Q Consensus 78 Vtv~AGNDEn~~aELRN~tavmknqvA~FNDLR--FvGRSGRGKs 120 (155)
+.++|-+.++ ..+|.+...-..+....-...+ |+|+||.|||
T Consensus 73 ~~iSa~~~~~-~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKS 116 (157)
T cd01858 73 FHASINNPFG-KGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKS 116 (157)
T ss_pred EEeecccccc-HHHHHHHHHHHHhhhccccceEEEEEeCCCCChH
Confidence 4456655554 3455554433222111123455 8999999998
No 5
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=83.19 E-value=6.3 Score=33.93 Aligned_cols=96 Identities=19% Similarity=0.263 Sum_probs=65.0
Q ss_pred ccchhHHHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEE-eecCCCCeEEEEeecCCCccch-hcch
Q psy13769 17 AMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVV-LDDVMDGTIVTIRAGNDDNYCG-ELRN 94 (155)
Q Consensus 17 ~~~~~~~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVva-L~~VpDGT~Vtv~AGNDEn~~a-ELRN 94 (155)
.++.+.++.+.+.|+.+.|.-+-..+|.+-|. ||. ...+|-+ +.++-+|..++|+--....+.- +|.+
T Consensus 60 ~~~~~~~~~~~~~lA~~~g~~~~~~~P~l~~~-lp~---------~G~Rv~~~~~p~~~g~~~~IRk~~~~~~tl~~l~~ 129 (319)
T PRK13894 60 TLRVAQAQAIIETIAGYHGKEVTRSKPILEGE-LPL---------DGSRFAGQLPPVVPAPTFAIRKKAVAIFTLDQYVE 129 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCCcccCCCceEEEE-cCC---------CCEEEEEEcCCcCCCcEEEEECCCCCCCCHHHHHh
Confidence 35667888999999999999999999966554 341 2345544 3456688889999876554332 2321
Q ss_pred -------hhhhhhcccccccceeeeeccCCCceeE
Q psy13769 95 -------CTAVVKNQVAKFNDLRFVGRSGRGKSFT 122 (155)
Q Consensus 95 -------~tavmknqvA~FNDLRFvGRSGRGKsft 122 (155)
..+.++..+..-..+=++|..|.||+-.
T Consensus 130 ~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl 164 (319)
T PRK13894 130 RGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTL 164 (319)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 1244555555556678999999999833
No 6
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=78.19 E-value=1.3 Score=31.29 Aligned_cols=13 Identities=62% Similarity=1.083 Sum_probs=10.7
Q ss_pred eEEeeeCCCCCCC
Q psy13769 141 IKVTVDGPREPRS 153 (155)
Q Consensus 141 IKVTVDGPRePR~ 153 (155)
|=+|.||||-||+
T Consensus 62 ~~itpDGPrGP~r 74 (74)
T PF04028_consen 62 IAITPDGPRGPRR 74 (74)
T ss_pred EEEeCCCCCCCCC
Confidence 3478999999985
No 7
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=76.61 E-value=2.5 Score=31.60 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=27.8
Q ss_pred eEEEEeecCCCccchhcchhhhhhh-----ccccccc----ceeeeeccCCCcee
Q psy13769 76 TIVTIRAGNDDNYCGELRNCTAVVK-----NQVAKFN----DLRFVGRSGRGKSF 121 (155)
Q Consensus 76 T~Vtv~AGNDEn~~aELRN~tavmk-----nqvA~FN----DLRFvGRSGRGKsf 121 (155)
..+.++|-++++ ..||++...-+- +.-+++. .+.++|+||.|||=
T Consensus 77 ~vi~iSa~~~~g-i~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKst 130 (171)
T cd01856 77 KVLFVNAKSGKG-VKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKST 130 (171)
T ss_pred eEEEEECCCccc-HHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHH
Confidence 357788877765 566666554331 1111221 37899999999973
No 8
>TIGR00296 uncharacterized protein, PH0010 family. Members of this functionally uncharacterized protein family have been crystallized from Pyrococcus Horikoshii, Methanosarcina Mazei, and Sulfolobus Tokodaii.
Probab=75.13 E-value=2.2 Score=34.99 Aligned_cols=71 Identities=21% Similarity=0.385 Sum_probs=48.3
Q ss_pred CCCeEEEEeecCCCccchhcchhh-----------hhhhccc-ccccceeeeecc-CCCceeEEEEEEecCCceee----
Q psy13769 73 MDGTIVTIRAGNDDNYCGELRNCT-----------AVVKNQV-AKFNDLRFVGRS-GRGKSFTLSIMVGSSPHQIA---- 135 (155)
Q Consensus 73 pDGT~Vtv~AGNDEn~~aELRN~t-----------avmknqv-A~FNDLRFvGRS-GRGKsftltItv~t~Ppqva---- 135 (155)
+-|+-||+...++ .+||.|. ++.+|-+ |-|+|=||-==+ .==+..++.|+|.+.|-.+.
T Consensus 43 ~~g~FVTl~~~~~----~~LRGCIGs~~p~~pL~~~v~~~A~~AA~~DpRF~Pl~~~EL~~l~ieVSvL~~~e~i~~~~~ 118 (200)
T TIGR00296 43 KRGVFITLKKKGN----KHLRGCIGTPEPVMPLIEAIEEAAISAATEDPRFPPVQLEELDDIKVEVSILTPPETIFVGGP 118 (200)
T ss_pred cccEEEEEEECCC----cCCCcccccCCCcccHHHHHHHHHHHHHcCCCCCCCCChHHhCCcEEEEEeCCCCEEcccCCc
Confidence 7789999986443 2588873 3555655 889999995311 11157888999999887763
Q ss_pred -eeeeeeEEeeeC
Q psy13769 136 -SYNKAIKVTVDG 147 (155)
Q Consensus 136 -ty~~AIKVTVDG 147 (155)
.+-..+++-.||
T Consensus 119 ~~~~~~~~~G~hG 131 (200)
T TIGR00296 119 KDYPFDIEIGRHG 131 (200)
T ss_pred cccHHHcccccce
Confidence 455566666666
No 9
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=72.88 E-value=12 Score=32.31 Aligned_cols=97 Identities=12% Similarity=0.234 Sum_probs=60.8
Q ss_pred cchhHHHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEEeecCCCCe-EEEEeecCCCccc-hhcc--
Q psy13769 18 MTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGT-IVTIRAGNDDNYC-GELR-- 93 (155)
Q Consensus 18 ~~~~~~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL~~VpDGT-~Vtv~AGNDEn~~-aELR-- 93 (155)
++.+.+..+.+.++.+.|.-+-..+|.+-+. ||..-|-+-.+|. -+.+|+ .++|+--...+++ .+|.
T Consensus 51 ~~~~~~~~l~~~ia~~~~~~i~~~~P~l~~~-Lp~G~Rv~~~~~p--------~~~~~~~~~~IRk~~~~~~sl~~l~~~ 121 (332)
T PRK13900 51 LDLSHLKALGRLVAQATEQKISEEKPLLSAT-LPNGYRIQIVFPP--------ACEIGQIVYSIRKPSGMQLTLDDYEKM 121 (332)
T ss_pred CCHHHHHHHHHHHHHHcCCcccCCCceEEEE-cCCCeEEEEEcCC--------cccCCCceEEEECCCCCCCCHHHHHhc
Confidence 4667788899999999998888899966665 5644444333322 134555 5777766554332 1111
Q ss_pred --------------------------hhhhhhhcccccccceeeeeccCCCceeEE
Q psy13769 94 --------------------------NCTAVVKNQVAKFNDLRFVGRSGRGKSFTL 123 (155)
Q Consensus 94 --------------------------N~tavmknqvA~FNDLRFvGRSGRGKsftl 123 (155)
...+.++..|..--.+=+.|..|+||+=.|
T Consensus 122 g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~~v~~~~nili~G~tgSGKTTll 177 (332)
T PRK13900 122 GAFDETATESLVDEDDVILNELLAEKKIKEFLEHAVISKKNIIISGGTSTGKTTFT 177 (332)
T ss_pred CCCCcccccccccchhhhhhhhhhhHHHHHHHHHHHHcCCcEEEECCCCCCHHHHH
Confidence 112344555555566889999999998544
No 10
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=71.07 E-value=15 Score=32.10 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=59.3
Q ss_pred cchhHHHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEEe-ecCCCCeEEEEeecCCCccchh-cchh
Q psy13769 18 MTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVL-DDVMDGTIVTIRAGNDDNYCGE-LRNC 95 (155)
Q Consensus 18 ~~~~~~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL-~~VpDGT~Vtv~AGNDEn~~aE-LRN~ 95 (155)
++.+.++.+.+.++...|.-+-..+|.+-|+ ||. ...++=+. .++..|..++|+--....+.-+ |-..
T Consensus 57 l~~~~~~~~i~~lA~~~~~~~~~~~P~l~~~-Lp~---------~g~Ri~~~~pp~~~~~~~~IRk~~~~~~tl~~lv~~ 126 (323)
T PRK13833 57 MSAAAAEVVIGSVAHALQSEADDERPIISGE-LPI---------GGHRFEGLLPPVVSGPAFTIRRRASRLIPLDDYVTS 126 (323)
T ss_pred CCHHHHHHHHHHHHHHhCCccCCCCceEEEE-eCC---------CCEEEEEEcCCCCCCceEEEECcCCCCCCHHHHHHc
Confidence 5667888888899998888888999975554 552 24465543 5666789999986554443222 1110
Q ss_pred h-------hhhhccc-ccccceeeeeccCCCceeEE
Q psy13769 96 T-------AVVKNQV-AKFNDLRFVGRSGRGKSFTL 123 (155)
Q Consensus 96 t-------avmknqv-A~FNDLRFvGRSGRGKsftl 123 (155)
- +.++.-+ ++.| +=+.|..|+||+-.+
T Consensus 127 g~~~~~~~~~L~~~v~~~~n-ilI~G~tGSGKTTll 161 (323)
T PRK13833 127 KIMTEAQASVIRSAIDSRLN-IVISGGTGSGKTTLA 161 (323)
T ss_pred CCCCHHHHHHHHHHHHcCCe-EEEECCCCCCHHHHH
Confidence 0 1111111 2445 559999999998544
No 11
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=68.78 E-value=15 Score=31.84 Aligned_cols=103 Identities=19% Similarity=0.288 Sum_probs=62.5
Q ss_pred chhHHHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEEe-ecC-CCCeEEEEeecCCCccc-hhcc--
Q psy13769 19 TSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVL-DDV-MDGTIVTIRAGNDDNYC-GELR-- 93 (155)
Q Consensus 19 ~~~~~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL-~~V-pDGT~Vtv~AGNDEn~~-aELR-- 93 (155)
+.+.++.+.+.++...|.-+-..+|.+- ..||.. ++|-+. .++ ++|+.++|+--....+. .+|.
T Consensus 92 ~~~~~~~l~~~la~~~g~~l~~~~P~~d-~~l~~g----------~Rv~~~~~pvs~~g~~i~IR~~~~~~~tl~~l~~~ 160 (340)
T TIGR03819 92 DEAAVRRLAQRLAAAAGRRLDDAQPWVD-GRLPDG----------TRLHAVLPPVATDGTCLSLRVPRPRTFTLDELVAS 160 (340)
T ss_pred CHHHHHHHHHHHHHHcCCcccCCCCeeE-eECCCC----------EEEEEEecCccCCCcEEEEEeeCCccCCHHHHHHc
Confidence 4567888888899998877778888544 344544 454333 333 67999999876654442 2221
Q ss_pred -----hhhhhhhcccccccceeeeeccCCCceeEEEEEEecCCc
Q psy13769 94 -----NCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 94 -----N~tavmknqvA~FNDLRFvGRSGRGKsftltItv~t~Pp 132 (155)
...+.++.-+..=-.+=+.|.+|.||+=.+...+.--||
T Consensus 161 g~~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~~ 204 (340)
T TIGR03819 161 GTFPPGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVAP 204 (340)
T ss_pred CCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCCC
Confidence 112333333333346779999999997555433333344
No 12
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=68.45 E-value=2 Score=30.05 Aligned_cols=15 Identities=47% Similarity=0.691 Sum_probs=11.8
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+-++|++|+|||=-|
T Consensus 14 ~~i~G~nGsGKStLl 28 (137)
T PF00005_consen 14 VAIVGPNGSGKSTLL 28 (137)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEEccCCCccccce
Confidence 467999999998433
No 13
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=66.91 E-value=29 Score=29.42 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=59.7
Q ss_pred cchhHHHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEE-EeecCCCCeEEEEeecCCCccch-hcch-
Q psy13769 18 MTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVV-VLDDVMDGTIVTIRAGNDDNYCG-ELRN- 94 (155)
Q Consensus 18 ~~~~~~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVv-aL~~VpDGT~Vtv~AGNDEn~~a-ELRN- 94 (155)
++.+.+..+.+.|+...|.-+...+|-+-+ .||. ...++- .+.++.+|..++|+--....+.- +|..
T Consensus 45 ~s~~~~~~l~~~la~~~g~~~~~~~P~~~~-~lp~---------~g~R~~~~~~p~~~g~~i~IRk~~~~~~tl~~l~~~ 114 (299)
T TIGR02782 45 MSPADAQRIIGLVADYLGTEVDRDKPIVEG-ELPL---------DGSRFEGLIPPVVAAPSFAIRKKAVAVFTLDDYVEA 114 (299)
T ss_pred CCHHHHHHHHHHHHHHhCCeecCCCCEEEE-EECC---------CCEEEEEEecCccCCcEEEEECcCCCCCCHHHHHhc
Confidence 467888899999999999888888886654 3342 245664 34667779999998755433222 2210
Q ss_pred ------hhhhhhcccccccceeeeeccCCCceeE
Q psy13769 95 ------CTAVVKNQVAKFNDLRFVGRSGRGKSFT 122 (155)
Q Consensus 95 ------~tavmknqvA~FNDLRFvGRSGRGKsft 122 (155)
..+.++..+..-..+=+.|..|+||+=.
T Consensus 115 g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl 148 (299)
T TIGR02782 115 GIMTAAQRDVLREAVLARKNILVVGGTGSGKTTL 148 (299)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 1122333333223455999999999743
No 14
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=64.99 E-value=2.6 Score=28.97 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=10.2
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
.=++|++|.|||
T Consensus 2 V~iiG~~~~GKS 13 (116)
T PF01926_consen 2 VAIIGRPNVGKS 13 (116)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 348999999997
No 15
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=63.58 E-value=7.1 Score=28.30 Aligned_cols=44 Identities=23% Similarity=0.171 Sum_probs=30.3
Q ss_pred EEEEeecCCCccchhcchhhhhhhcccccccceeeeeccCCCcee
Q psy13769 77 IVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSF 121 (155)
Q Consensus 77 ~Vtv~AGNDEn~~aELRN~tavmknqvA~FNDLRFvGRSGRGKsf 121 (155)
.+.++|-+.++ ..||++...-+-..-++.-..-++|.||.|||=
T Consensus 73 ~~~iSa~~~~g-i~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkss 116 (156)
T cd01859 73 VVYVSAKERLG-TKILRRTIKELAKIDGKEGKVGVVGYPNVGKSS 116 (156)
T ss_pred EEEEEcccccc-HHHHHHHHHHHHhhcCCCcEEEEECCCCCCHHH
Confidence 46677766655 567877766544344455567899999999973
No 16
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=62.69 E-value=11 Score=29.75 Aligned_cols=42 Identities=29% Similarity=0.490 Sum_probs=28.3
Q ss_pred CeEEEEeecCCCcc----chhcchh--hhhhhcccccc--cceeeeeccC
Q psy13769 75 GTIVTIRAGNDDNY----CGELRNC--TAVVKNQVAKF--NDLRFVGRSG 116 (155)
Q Consensus 75 GT~Vtv~AGNDEn~----~aELRN~--tavmknqvA~F--NDLRFvGRSG 116 (155)
+..|.+-.||-|.+ ..+++.. .-.+.+....| +++||+|=.|
T Consensus 61 ~~pv~~v~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ig~~g 110 (239)
T TIGR03729 61 GIKVTFNAGNHDMLKDLTYEEIESNDSPLYLHNRFIDIPNTQWRIIGNNG 110 (239)
T ss_pred CCcEEEECCCCCCCCCCCHHHHHhccchhhhcccccccCCCceEEEeecc
Confidence 45678899999975 2335432 12456666777 9999999654
No 17
>PRK00801 hypothetical protein; Provisional
Probab=62.50 E-value=6.7 Score=32.34 Aligned_cols=69 Identities=28% Similarity=0.441 Sum_probs=44.9
Q ss_pred CCCeEEEEeecCCCccchhcchhh-----------hhhhccc-ccccceeeee-ccCCCceeEEEEEEecCCceeee---
Q psy13769 73 MDGTIVTIRAGNDDNYCGELRNCT-----------AVVKNQV-AKFNDLRFVG-RSGRGKSFTLSIMVGSSPHQIAS--- 136 (155)
Q Consensus 73 pDGT~Vtv~AGNDEn~~aELRN~t-----------avmknqv-A~FNDLRFvG-RSGRGKsftltItv~t~Ppqvat--- 136 (155)
+-|+-||+.- -.+||.|. .+.+|-+ |-|+|=||-= +..==+..++.|+|.+.|-.+..
T Consensus 43 ~~g~FVTl~~------~g~LRGCIGs~~p~~pL~~~v~~~A~~AA~~DpRF~Pl~~~EL~~l~ieVSvLs~~e~i~~~~~ 116 (201)
T PRK00801 43 KRGVFVTLNK------HGVLRGCIGFPYPDSPLVEAIIDSAISAATRDPRFPPVKLEEMDEITVEVTVLTPPELIEGPPE 116 (201)
T ss_pred cccEEEEEEE------CCeeccccCCCCCcccHHHHHHHHHHHHHcCCCCCCCCChHHhCCcEEEEEEcCCCEEccCcch
Confidence 6788899965 25788773 3455544 7899999942 11122567888888888866642
Q ss_pred -eeeeeEEeeeC
Q psy13769 137 -YNKAIKVTVDG 147 (155)
Q Consensus 137 -y~~AIKVTVDG 147 (155)
+-..+.|-.||
T Consensus 117 ~l~~~~~~G~~G 128 (201)
T PRK00801 117 ELPEKIEVGRHG 128 (201)
T ss_pred hhHHhccccceE
Confidence 23445666655
No 18
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=62.00 E-value=3.1 Score=28.69 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=13.9
Q ss_pred cccccc----ceeeeeccCCCce
Q psy13769 102 QVAKFN----DLRFVGRSGRGKS 120 (155)
Q Consensus 102 qvA~FN----DLRFvGRSGRGKs 120 (155)
+...|. ..=+.|.||+|||
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKS 37 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKS 37 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHH
Confidence 444554 2568899999998
No 19
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=61.73 E-value=3.2 Score=33.04 Aligned_cols=11 Identities=45% Similarity=0.655 Sum_probs=9.6
Q ss_pred eeeccCCCcee
Q psy13769 111 FVGRSGRGKSF 121 (155)
Q Consensus 111 FvGRSGRGKsf 121 (155)
+||.||+|||=
T Consensus 30 IvG~NGsGKSt 40 (251)
T cd03273 30 ITGLNGSGKSN 40 (251)
T ss_pred EECCCCCCHHH
Confidence 68999999983
No 20
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=61.45 E-value=3.7 Score=28.48 Aligned_cols=27 Identities=15% Similarity=0.384 Sum_probs=18.2
Q ss_pred cchhhhhhhcccccccceeeeeccCCC
Q psy13769 92 LRNCTAVVKNQVAKFNDLRFVGRSGRG 118 (155)
Q Consensus 92 LRN~tavmknqvA~FNDLRFvGRSGRG 118 (155)
++.-...|+.--.++..++|.|.||-|
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~s~~g 30 (93)
T PF02575_consen 4 AQEMQEKMEEAQEELAEIEVTGTSGDG 30 (93)
T ss_dssp HHHHHHHHHHHHHHHHHSEEEEEETCC
T ss_pred HHHHHHHHHHHHHHHhcCEEEEEECCC
Confidence 333344444455566789999999988
No 21
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=60.97 E-value=3.2 Score=36.83 Aligned_cols=10 Identities=70% Similarity=1.022 Sum_probs=9.3
Q ss_pred eeeccCCCce
Q psy13769 111 FVGRSGRGKS 120 (155)
Q Consensus 111 FvGRSGRGKs 120 (155)
+||+||+|||
T Consensus 360 iVG~sGsGKS 369 (567)
T COG1132 360 IVGPSGSGKS 369 (567)
T ss_pred EECCCCCCHH
Confidence 7999999996
No 22
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=60.56 E-value=3.6 Score=32.06 Aligned_cols=14 Identities=43% Similarity=0.600 Sum_probs=11.1
Q ss_pred eeeeccCCCceeEE
Q psy13769 110 RFVGRSGRGKSFTL 123 (155)
Q Consensus 110 RFvGRSGRGKsftl 123 (155)
-++|.+|.|||=.|
T Consensus 32 ~i~G~NGsGKSTll 45 (213)
T cd03279 32 LICGPTGAGKSTIL 45 (213)
T ss_pred EEECCCCCCHHHHH
Confidence 38899999998443
No 23
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=60.34 E-value=3.6 Score=30.82 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=13.5
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=++|.||.|||=.+.+
T Consensus 18 v~I~GpSGsGKSTLl~~ 34 (107)
T cd00820 18 VLITGDSGIGKTELALE 34 (107)
T ss_pred EEEEcCCCCCHHHHHHH
Confidence 35789999999966655
No 24
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=59.60 E-value=48 Score=29.12 Aligned_cols=59 Identities=25% Similarity=0.254 Sum_probs=38.6
Q ss_pred cchhHHHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEEeecCCCCe-EEEEeecCC
Q psy13769 18 MTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGT-IVTIRAGND 85 (155)
Q Consensus 18 ~~~~~~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL~~VpDGT-~Vtv~AGND 85 (155)
++.+.+..+...++.+.+..+...+|.+-|. ||...|-+-.+| .-++.|| .++|+-=..
T Consensus 49 l~~~~~~~l~~~~a~~~~~~~~~~~Pil~a~-LpdG~Rv~~v~p--------P~~~~g~~sitIRk~~~ 108 (344)
T PRK13851 49 LSYDDLEDIAILAGALRKQDVGPRNPLCATE-LPGGERLQICLP--------PTVPSGTVSLTIRRPSS 108 (344)
T ss_pred CCHHHHHHHHHHHHHhcCCccccCCcEEEEE-CCCCeEEEEEec--------ccccCCceEEEEEccCC
Confidence 4667788888899999999999999965554 464444332222 2346676 677775433
No 25
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=59.57 E-value=3.5 Score=35.52 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=16.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+-++|.||+|||=-|.|----..|+
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~p~ 56 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEKPT 56 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4568999999996555544444443
No 26
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=58.44 E-value=9.8 Score=27.90 Aligned_cols=45 Identities=20% Similarity=0.167 Sum_probs=26.7
Q ss_pred EEEEeecCCCccchhcchhhhhh---------hcc-cccccceeeeeccCCCceeE
Q psy13769 77 IVTIRAGNDDNYCGELRNCTAVV---------KNQ-VAKFNDLRFVGRSGRGKSFT 122 (155)
Q Consensus 77 ~Vtv~AGNDEn~~aELRN~tavm---------knq-vA~FNDLRFvGRSGRGKsft 122 (155)
.+.++|-++++ ..+|++..... ++. ..+=-.+-++|++|.|||-.
T Consensus 62 ii~vSa~~~~g-i~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstl 116 (155)
T cd01849 62 PFKISATNGQG-IEKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSV 116 (155)
T ss_pred EEEEeccCCcC-hhhHHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHH
Confidence 56778877766 56666643211 000 01112366999999999963
No 27
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=58.43 E-value=5.1 Score=32.44 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=11.7
Q ss_pred eeeccCCCceeEEEEE
Q psy13769 111 FVGRSGRGKSFTLSIM 126 (155)
Q Consensus 111 FvGRSGRGKsftltIt 126 (155)
.+|.||.|||=-|.+-
T Consensus 55 I~G~nGsGKSTLl~~i 70 (271)
T PRK14238 55 IIGPSGCGKSTYIKTL 70 (271)
T ss_pred EECCCCCCHHHHHHHH
Confidence 5789999998544443
No 28
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=58.28 E-value=3.8 Score=39.26 Aligned_cols=13 Identities=62% Similarity=0.905 Sum_probs=10.7
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
.=.|||||+|||=
T Consensus 502 vaIvG~SGsGKST 514 (709)
T COG2274 502 VAIVGRSGSGKST 514 (709)
T ss_pred EEEECCCCCCHHH
Confidence 4479999999983
No 29
>PRK12288 GTPase RsgA; Reviewed
Probab=58.26 E-value=7.9 Score=33.71 Aligned_cols=36 Identities=28% Similarity=0.495 Sum_probs=25.5
Q ss_pred eEEEEeecCCCccchhcchhhhhhhcccccccceeeeeccCCCce
Q psy13769 76 TIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKS 120 (155)
Q Consensus 76 T~Vtv~AGNDEn~~aELRN~tavmknqvA~FNDLRFvGRSGRGKs 120 (155)
..+.++|-+.++ ..||++... +++ .=|+|.||.|||
T Consensus 184 ~v~~vSA~tg~G-ideL~~~L~---~ki-----~~~vG~sgVGKS 219 (347)
T PRK12288 184 RVLMVSSHTGEG-LEELEAALT---GRI-----SIFVGQSGVGKS 219 (347)
T ss_pred eEEEEeCCCCcC-HHHHHHHHh---hCC-----EEEECCCCCCHH
Confidence 456778887776 456776543 333 459999999998
No 30
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=58.26 E-value=4.1 Score=31.70 Aligned_cols=11 Identities=64% Similarity=0.972 Sum_probs=9.8
Q ss_pred eeeeccCCCce
Q psy13769 110 RFVGRSGRGKS 120 (155)
Q Consensus 110 RFvGRSGRGKs 120 (155)
=++|++|.|||
T Consensus 27 ~i~GpNGsGKS 37 (243)
T cd03272 27 VVVGRNGSGKS 37 (243)
T ss_pred EEECCCCCCHH
Confidence 37999999998
No 31
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=58.21 E-value=3.7 Score=39.57 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=48.5
Q ss_pred HHHHHHHhhhccceeec--CCCcEEeecCCCccccCCCCCcc--eEEEEeecCCCCeEEEEeecCCCccch---hcchhh
Q psy13769 24 AGIHEALQEYHGELVQT--GSPTILCSVLPTHWRSNKSLPIA--FKVVVLDDVMDGTIVTIRAGNDDNYCG---ELRNCT 96 (155)
Q Consensus 24 ~~~~~~l~~~~gelv~T--~sP~~lCs~LP~HWRsNKtLP~~--FkVvaL~~VpDGT~Vtv~AGNDEn~~a---ELRN~t 96 (155)
+.+..++++..=.+++- .....+.+.||.+|..|--.+.- .-+.++-+ ...+..|...+.|- +-..+.
T Consensus 394 ~~v~~~l~~~g~~~~~e~~~~~~af~a~lPg~~~~~~r~~~itt~n~a~l~p-----~~~~~~G~~~~~~~~~~~~~~~l 468 (852)
T PRK13891 394 LLVEKAINRLGFAARIETINTMDAYLGSLPGHGVENVRRPLINTMNLADLLP-----TSSIWTGSATAPCPMYPPLSPAL 468 (852)
T ss_pred HHHHHHHHhCCcEEEEcccccHHHHHhcCCCCcccccccccccchhhHHhhh-----hccccCCccCCCCcccCCCCCce
Confidence 34555555553333332 45667789999988765433220 00111111 22456665555331 112333
Q ss_pred hhhhcccc---ccc-------ceeeeeccCCCceeEEE
Q psy13769 97 AVVKNQVA---KFN-------DLRFVGRSGRGKSFTLS 124 (155)
Q Consensus 97 avmknqvA---~FN-------DLRFvGRSGRGKsftlt 124 (155)
+.+++.-. .|| -.-.+|.||.||||.+.
T Consensus 469 ~~~~t~~~~p~~fN~h~~d~gh~~I~G~tGsGKS~l~~ 506 (852)
T PRK13891 469 MHCVTVGATPFRLNLHVRDLGHTFMFGPTGAGKSTHLG 506 (852)
T ss_pred EEEecCCCCceEEEeEeCCCCeEEEECCCCCCHHHHHH
Confidence 33332222 344 24578999999999764
No 32
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=57.70 E-value=4.3 Score=27.83 Aligned_cols=10 Identities=50% Similarity=0.817 Sum_probs=8.8
Q ss_pred eeeccCCCce
Q psy13769 111 FVGRSGRGKS 120 (155)
Q Consensus 111 FvGRSGRGKs 120 (155)
..|.||+|||
T Consensus 4 I~G~~gsGKS 13 (121)
T PF13207_consen 4 ISGPPGSGKS 13 (121)
T ss_dssp EEESTTSSHH
T ss_pred EECCCCCCHH
Confidence 5799999998
No 33
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=57.09 E-value=4 Score=33.71 Aligned_cols=12 Identities=42% Similarity=0.830 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|++|.|||
T Consensus 34 IllvG~tGvGKS 45 (249)
T cd01853 34 ILVLGKTGVGKS 45 (249)
T ss_pred EEEECCCCCcHH
Confidence 457999999998
No 34
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=56.63 E-value=4.2 Score=32.39 Aligned_cols=31 Identities=29% Similarity=0.406 Sum_probs=20.5
Q ss_pred ecCCCccchhcchhhhhhhcccccccceeeeeccCCCce
Q psy13769 82 AGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKS 120 (155)
Q Consensus 82 AGNDEn~~aELRN~tavmknqvA~FNDLRFvGRSGRGKs 120 (155)
..++..-..||+... +++ -.=|+|-||.|||
T Consensus 19 S~~~~~g~~~l~~~l---~~k-----~~vl~G~SGvGKS 49 (161)
T PF03193_consen 19 SAKTGEGIEELKELL---KGK-----TSVLLGQSGVGKS 49 (161)
T ss_dssp BTTTTTTHHHHHHHH---TTS-----EEEEECSTTSSHH
T ss_pred eCCCCcCHHHHHHHh---cCC-----EEEEECCCCCCHH
Confidence 334556666776543 332 3568999999998
No 35
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=54.67 E-value=4.7 Score=35.27 Aligned_cols=14 Identities=43% Similarity=0.736 Sum_probs=11.6
Q ss_pred cceeeeeccCCCce
Q psy13769 107 NDLRFVGRSGRGKS 120 (155)
Q Consensus 107 NDLRFvGRSGRGKs 120 (155)
.=.=+||.||+|||
T Consensus 362 ~~vaIvG~SGsGKS 375 (529)
T TIGR02868 362 ERVAILGPSGSGKS 375 (529)
T ss_pred CEEEEECCCCCCHH
Confidence 34567999999998
No 36
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=54.44 E-value=5.1 Score=28.62 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 17 v~i~G~~g~GKS 28 (173)
T cd04155 17 ILILGLDNAGKT 28 (173)
T ss_pred EEEEccCCCCHH
Confidence 568999999997
No 37
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=54.43 E-value=4.9 Score=30.78 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=15.8
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||+|||=-+.+-.--.+|
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (220)
T cd03263 31 FGLLGHNGAGKTTTLKMLTGELRP 54 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 457899999999554444333344
No 38
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=54.21 E-value=5 Score=31.57 Aligned_cols=12 Identities=50% Similarity=0.686 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=|.|.||.|||
T Consensus 17 vLi~G~sG~GKS 28 (149)
T cd01918 17 VLITGPSGIGKS 28 (149)
T ss_pred EEEEcCCCCCHH
Confidence 458999999999
No 39
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=53.18 E-value=5.3 Score=32.53 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=22.9
Q ss_pred EEEEeecCCCccchhcchhhhhhhcccccccceeeeeccCCCce
Q psy13769 77 IVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKS 120 (155)
Q Consensus 77 ~Vtv~AGNDEn~~aELRN~tavmknqvA~FNDLRFvGRSGRGKs 120 (155)
.+.++|-+.++ -.||.+..+ ++ -.=|+|.||.|||
T Consensus 100 v~~~SAktg~g-i~eLf~~l~---~~-----~~~~~G~sgvGKS 134 (245)
T TIGR00157 100 VLMTSSKNQDG-LKELIEALQ---NR-----ISVFAGQSGVGKS 134 (245)
T ss_pred EEEEecCCchh-HHHHHhhhc---CC-----EEEEECCCCCCHH
Confidence 34567777665 456665433 21 3459999999997
No 40
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=52.98 E-value=5.3 Score=30.07 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=15.8
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-|.+-.--.+|
T Consensus 21 ~~i~G~nGsGKSTLl~~i~G~~~~ 44 (190)
T TIGR01166 21 LALLGANGAGKSTLLLHLNGLLRP 44 (190)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 457899999999655444333344
No 41
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=52.94 E-value=5.4 Score=30.51 Aligned_cols=25 Identities=32% Similarity=0.654 Sum_probs=17.1
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||+|||=-|.+-.--.||.
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl~~~~ 53 (222)
T cd03224 29 VALLGRNGAGKTTLLKTIMGLLPPR 53 (222)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4578999999996655544444553
No 42
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=52.88 E-value=5.6 Score=31.57 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=11.6
Q ss_pred eeeeccCCCceeEEE
Q psy13769 110 RFVGRSGRGKSFTLS 124 (155)
Q Consensus 110 RFvGRSGRGKsftlt 124 (155)
=|+|++|.|||=.+.
T Consensus 29 ~ivGpNGaGKSTll~ 43 (212)
T cd03274 29 AIVGPNGSGKSNVID 43 (212)
T ss_pred EEECCCCCCHHHHHH
Confidence 378999999985443
No 43
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=52.86 E-value=5.4 Score=30.35 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=15.6
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-|.+-.--.+|
T Consensus 30 ~~l~G~nGsGKSTLl~~l~G~~~~ 53 (211)
T cd03225 30 VLIVGPNGSGKSTLLRLLNGLLGP 53 (211)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 456899999998655443333344
No 44
>PF14564 Membrane_bind: Membrane binding; PDB: 1YHP_A 2B1O_A.
Probab=52.60 E-value=14 Score=28.13 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=18.9
Q ss_pred ceeee-eccCCCceeEEEEEEecCC
Q psy13769 108 DLRFV-GRSGRGKSFTLSIMVGSSP 131 (155)
Q Consensus 108 DLRFv-GRSGRGKsftltItv~t~P 131 (155)
|+||+ ..+|-+++|.|+|..+...
T Consensus 3 ~irlv~~~~~~~~~Y~l~i~~~~v~ 27 (110)
T PF14564_consen 3 DIRLVDNTGGPAGKYSLTIKPYGVD 27 (110)
T ss_dssp EEEEEESS-TT-TTEEEEEEETT--
T ss_pred EEEEEEcCCCCCcEEEEEEEeeecC
Confidence 79999 8999999999999998755
No 45
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=52.48 E-value=5.6 Score=31.14 Aligned_cols=15 Identities=40% Similarity=0.632 Sum_probs=11.5
Q ss_pred eeeeccCCCceeEEE
Q psy13769 110 RFVGRSGRGKSFTLS 124 (155)
Q Consensus 110 RFvGRSGRGKsftlt 124 (155)
=++|+||.|||=-+.
T Consensus 26 ~i~G~nGsGKStll~ 40 (197)
T cd03278 26 AIVGPNGSGKSNIID 40 (197)
T ss_pred EEECCCCCCHHHHHH
Confidence 479999999984443
No 46
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=52.31 E-value=5.7 Score=33.60 Aligned_cols=12 Identities=42% Similarity=0.808 Sum_probs=10.4
Q ss_pred eeeeccCCCcee
Q psy13769 110 RFVGRSGRGKSF 121 (155)
Q Consensus 110 RFvGRSGRGKsf 121 (155)
=++|+||+|||-
T Consensus 17 viIG~sGSGKT~ 28 (241)
T PF04665_consen 17 VIIGKSGSGKTT 28 (241)
T ss_pred EEECCCCCCHHH
Confidence 479999999985
No 47
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=52.22 E-value=37 Score=28.67 Aligned_cols=102 Identities=13% Similarity=0.048 Sum_probs=54.6
Q ss_pred cchhHHHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEEeecCCCCeEEEEeecCCCccc--hhcchh
Q psy13769 18 MTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYC--GELRNC 95 (155)
Q Consensus 18 ~~~~~~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL~~VpDGT~Vtv~AGNDEn~~--aELRN~ 95 (155)
++.+++..+.+.++.+.+--+.-..|.-+.+ ||..-|..=..|.+ +.+||+.||+-=.--|.- .|..++
T Consensus 27 lt~~~l~~l~~~la~~s~~~~~~~~~~~~~t-lpgG~Rv~i~~~p~--------~~~g~v~tIR~~s~~~~r~~~~~~~~ 97 (270)
T TIGR02858 27 PTVEDVNYILQLISNYSLYAFEEELKQGYIT-IEGGHRVGLAGRCV--------TENGKVKTIKNVSSLNIRIAREKLGA 97 (270)
T ss_pred CCHHHHHHHHHHHHhccccccccccccceEE-cCCCcEEEEEccce--------ecCCEEEEEEcccccEEEeccccCCc
Confidence 5778999999999999886555566654443 25444444333322 456775555433222220 000111
Q ss_pred h-hhhhccc--ccccceeeeeccCCCceeEEEEEEe
Q psy13769 96 T-AVVKNQV--AKFNDLRFVGRSGRGKSFTLSIMVG 128 (155)
Q Consensus 96 t-avmknqv--A~FNDLRFvGRSGRGKsftltItv~ 128 (155)
. ..|..-. .+|...=++|-+|+|||=.+.....
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~ 133 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLAR 133 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhC
Confidence 1 1111111 2344567999999999855443333
No 48
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=52.18 E-value=5.6 Score=30.22 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=16.2
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+-.+|.||.|||=-|.+-.--.||.
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~~~~ 54 (214)
T cd03292 30 VFLVGPSGAGKSTLLKLIYKEELPT 54 (214)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4568999999985444443444543
No 49
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=52.13 E-value=6.4 Score=27.89 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=11.9
Q ss_pred cceeeeeccCCCce
Q psy13769 107 NDLRFVGRSGRGKS 120 (155)
Q Consensus 107 NDLRFvGRSGRGKs 120 (155)
-.+=++|.+|.|||
T Consensus 8 ~~v~v~G~~~~GKS 21 (169)
T cd04114 8 FKIVLIGNAGVGKT 21 (169)
T ss_pred eEEEEECCCCCCHH
Confidence 45778999999997
No 50
>PF10442 FIST_C: FIST C domain; InterPro: IPR019494 This entry represents a novel sensory domain, designated FIST C (short for F-box and intracellular signal transduction, C-terminal), which is present in signal transduction proteins from bacteria, archaea and eukaryotes. The chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=51.90 E-value=22 Score=25.45 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=28.0
Q ss_pred EEEeecCCCCeEEEEeecCCCccchhcchhhhhh
Q psy13769 66 VVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVV 99 (155)
Q Consensus 66 VvaL~~VpDGT~Vtv~AGNDEn~~aELRN~tavm 99 (155)
+.-.++|+.|+.|.++-+|-+.....++.+...+
T Consensus 50 l~~~~~v~eG~~v~l~~~~~~~~~~~~~~~~~~~ 83 (136)
T PF10442_consen 50 LTFAGDVPEGSEVQLMEGDPEDIIESAEEALEKA 83 (136)
T ss_pred EEEeeecCCCCEEEEEcCCHHHHHHHHHHHHHhh
Confidence 3455799999999999999888888887777655
No 51
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=51.83 E-value=5.7 Score=30.38 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=15.3
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|+||+|||=-|.|-.--.+|
T Consensus 28 ~~l~G~nGsGKSTLl~~l~G~~~p 51 (213)
T cd03235 28 LAIVGPNGAGKSTLLKAILGLLKP 51 (213)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCC
Confidence 346899999999555443333343
No 52
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=51.80 E-value=5.7 Score=30.32 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=13.6
Q ss_pred eeeeeccCCCceeEEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSIM 126 (155)
Q Consensus 109 LRFvGRSGRGKsftltIt 126 (155)
+=++|.||.|||=-|.+-
T Consensus 28 ~~i~G~nGsGKSTLl~~l 45 (211)
T cd03264 28 YGLLGPNGAGKTTLMRIL 45 (211)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 568999999998654443
No 53
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=51.68 E-value=5.8 Score=30.89 Aligned_cols=24 Identities=42% Similarity=0.600 Sum_probs=15.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-|.+-.--.+|
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~~p 52 (235)
T cd03261 29 LAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 457899999999544444333444
No 54
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=51.47 E-value=5.8 Score=30.23 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=15.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-+.+-.--.+|
T Consensus 31 ~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (214)
T TIGR02673 31 LFLTGPSGAGKTTLLKLLYGALTP 54 (214)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 346899999998655443333344
No 55
>PF05356 Phage_Coat_B: Phage Coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1QL1_A 2XKM_A 4IFM_A 1QL2_A 1IFM_A 2KLV_A 1IFN_A 2IFN_A 3IFM_A 2KSJ_A ....
Probab=51.42 E-value=4.9 Score=30.11 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=0.0
Q ss_pred hhhhcccccccceee
Q psy13769 97 AVVKNQVAKFNDLRF 111 (155)
Q Consensus 97 avmknqvA~FNDLRF 111 (155)
.-||||+||||-.|-
T Consensus 2 k~mkq~i~kf~~v~s 16 (83)
T PF05356_consen 2 KGMKQAIAKFRPVPS 16 (83)
T ss_dssp ---------------
T ss_pred chHHHHHHhcCCcHH
Confidence 359999999998863
No 56
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=51.35 E-value=5.3 Score=34.96 Aligned_cols=13 Identities=46% Similarity=0.664 Sum_probs=10.2
Q ss_pred eeeeccCCCceeE
Q psy13769 110 RFVGRSGRGKSFT 122 (155)
Q Consensus 110 RFvGRSGRGKsft 122 (155)
=.+|+||.|||=-
T Consensus 34 aiIG~SGaGKSTL 46 (258)
T COG3638 34 AIIGPSGAGKSTL 46 (258)
T ss_pred EEECCCCCcHHHH
Confidence 3479999999843
No 57
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=50.52 E-value=6.3 Score=34.25 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=18.8
Q ss_pred ceeeeeccCCCceeEEEEEEecCCceee
Q psy13769 108 DLRFVGRSGRGKSFTLSIMVGSSPHQIA 135 (155)
Q Consensus 108 DLRFvGRSGRGKsftltItv~t~Ppqva 135 (155)
=+-++|.||+|||=-|..-..-.+|+-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~~G 57 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPDSG 57 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCCCc
Confidence 4568999999999655544444555443
No 58
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=50.20 E-value=6.2 Score=33.59 Aligned_cols=17 Identities=47% Similarity=0.571 Sum_probs=12.8
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=++|+||.|||=-|.+
T Consensus 111 v~IvG~~GsGKSTLl~~ 127 (329)
T PRK14257 111 TAFIGPSGCGKSTFLRN 127 (329)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45789999999954443
No 59
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=50.04 E-value=6.2 Score=35.03 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=11.2
Q ss_pred ceeeeeccCCCcee
Q psy13769 108 DLRFVGRSGRGKSF 121 (155)
Q Consensus 108 DLRFvGRSGRGKsf 121 (155)
=.=.||+||+|||=
T Consensus 378 ~vaIvG~SGsGKST 391 (588)
T PRK11174 378 RIALVGPSGAGKTS 391 (588)
T ss_pred EEEEECCCCCCHHH
Confidence 34579999999993
No 60
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=49.73 E-value=6.5 Score=27.36 Aligned_cols=12 Identities=42% Similarity=0.897 Sum_probs=10.0
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|++|.|||
T Consensus 3 v~liG~~~vGKS 14 (142)
T TIGR02528 3 IMFIGSVGCGKT 14 (142)
T ss_pred EEEECCCCCCHH
Confidence 347999999986
No 61
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=49.67 E-value=15 Score=26.57 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=11.3
Q ss_pred ceeeeeccCCCcee
Q psy13769 108 DLRFVGRSGRGKSF 121 (155)
Q Consensus 108 DLRFvGRSGRGKsf 121 (155)
-+=|+|.||.|||=
T Consensus 85 ~~~~~G~~~vGKst 98 (141)
T cd01857 85 TIGLVGYPNVGKSS 98 (141)
T ss_pred EEEEECCCCCCHHH
Confidence 35689999999973
No 62
>PRK12289 GTPase RsgA; Reviewed
Probab=49.61 E-value=15 Score=32.17 Aligned_cols=35 Identities=26% Similarity=0.157 Sum_probs=23.8
Q ss_pred EEEEeecCCCccchhcchhhhhhhcccccccceeeeeccCCCce
Q psy13769 77 IVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKS 120 (155)
Q Consensus 77 ~Vtv~AGNDEn~~aELRN~tavmknqvA~FNDLRFvGRSGRGKs 120 (155)
.+.++|-+.++ ..||++... +. -+=|+|.||.|||
T Consensus 152 v~~iSA~tg~G-I~eL~~~L~---~k-----i~v~iG~SgVGKS 186 (352)
T PRK12289 152 PLFISVETGIG-LEALLEQLR---NK-----ITVVAGPSGVGKS 186 (352)
T ss_pred EEEEEcCCCCC-HHHHhhhhc---cc-----eEEEEeCCCCCHH
Confidence 45677777766 356665542 22 2579999999997
No 63
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=49.51 E-value=6.6 Score=29.96 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=16.9
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=.+|.||+|||=-|.|-.--.||+
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (210)
T cd03269 29 FGLLGPNGAGKTTTIRMILGIILPD 53 (210)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4578999999996555544444543
No 64
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=49.48 E-value=6.6 Score=30.27 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=16.2
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-+.+-.--.+|
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G~~~~ 54 (207)
T PRK13539 31 LVLTGPNGSGKTTLLRLIAGLLPP 54 (207)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 457899999999655554444444
No 65
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=49.47 E-value=6.6 Score=30.28 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=15.4
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||+|||=-+.|-.---+|
T Consensus 29 ~~i~G~nGsGKSTLl~~i~G~~~~ 52 (220)
T cd03265 29 FGLLGPNGAGKTTTIKMLTTLLKP 52 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 457899999999555443333343
No 66
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=49.45 E-value=6.2 Score=35.72 Aligned_cols=15 Identities=47% Similarity=0.680 Sum_probs=11.5
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+=.||+||.|||=-|
T Consensus 35 ~GIIG~SGAGKSTLi 49 (339)
T COG1135 35 FGIIGYSGAGKSTLL 49 (339)
T ss_pred EEEEcCCCCcHHHHH
Confidence 446999999998433
No 67
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=49.45 E-value=6.6 Score=29.82 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=15.2
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-|.+-.--.||
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03262 29 VVIIGPSGSGKSTLLRCINLLEEP 52 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 446899999998544443333344
No 68
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=49.39 E-value=6.6 Score=30.07 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=16.2
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-|.+-.--.+|
T Consensus 32 ~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (216)
T TIGR00960 32 VFLVGHSGAGKSTFLKLILGIEKP 55 (216)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 457899999999655544444444
No 69
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=49.00 E-value=6.6 Score=35.83 Aligned_cols=15 Identities=47% Similarity=0.581 Sum_probs=11.9
Q ss_pred cceeeeeccCCCcee
Q psy13769 107 NDLRFVGRSGRGKSF 121 (155)
Q Consensus 107 NDLRFvGRSGRGKsf 121 (155)
.=+=+||+||+|||=
T Consensus 480 e~vaIvG~sGsGKST 494 (686)
T TIGR03797 480 EFVAIVGPSGSGKST 494 (686)
T ss_pred CEEEEECCCCCCHHH
Confidence 345679999999983
No 70
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=48.93 E-value=6.8 Score=27.75 Aligned_cols=12 Identities=50% Similarity=0.861 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|++|.|||
T Consensus 6 i~vvG~~~~GKS 17 (165)
T cd01868 6 IVLIGDSGVGKS 17 (165)
T ss_pred EEEECCCCCCHH
Confidence 558999999987
No 71
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=48.57 E-value=6.7 Score=35.91 Aligned_cols=18 Identities=39% Similarity=0.422 Sum_probs=13.6
Q ss_pred ccccceeeeeccCCCcee
Q psy13769 104 AKFNDLRFVGRSGRGKSF 121 (155)
Q Consensus 104 A~FNDLRFvGRSGRGKsf 121 (155)
.+-.-+-.||+||+|||=
T Consensus 498 ~~G~~vaIvG~SGsGKST 515 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKST 515 (708)
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 333456789999999993
No 72
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=48.34 E-value=3.5 Score=31.90 Aligned_cols=15 Identities=40% Similarity=0.707 Sum_probs=12.3
Q ss_pred eeeccCCCceeEEEE
Q psy13769 111 FVGRSGRGKSFTLSI 125 (155)
Q Consensus 111 FvGRSGRGKsftltI 125 (155)
.+|.+|.|||+++..
T Consensus 28 I~G~TGsGKS~~~~~ 42 (229)
T PF01935_consen 28 IFGTTGSGKSNTVKV 42 (229)
T ss_pred EECCCCCCHHHHHHH
Confidence 579999999987643
No 73
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.32 E-value=7 Score=30.11 Aligned_cols=24 Identities=42% Similarity=0.563 Sum_probs=15.6
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-|.+-.--.+|
T Consensus 33 ~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (220)
T cd03293 33 VALVGPSGCGKSTLLRIIAGLERP 56 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 457899999998555443333344
No 74
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=48.25 E-value=7 Score=29.88 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=15.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-|.+-.--.||
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl~~~ 57 (218)
T cd03266 34 TGLLGPNGAGKTTTLRMLAGLLEP 57 (218)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC
Confidence 457899999999544443333344
No 75
>PRK00098 GTPase RsgA; Reviewed
Probab=47.93 E-value=7.1 Score=32.64 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=21.6
Q ss_pred EEEEeecCCCccchhcchhhhhhhcccccccceeeeeccCCCcee
Q psy13769 77 IVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSF 121 (155)
Q Consensus 77 ~Vtv~AGNDEn~~aELRN~tavmknqvA~FNDLRFvGRSGRGKsf 121 (155)
.+.++|-+.++ ..||+... ++. =.=|+|+||.|||=
T Consensus 144 v~~vSA~~g~g-i~~L~~~l---~gk-----~~~~~G~sgvGKSt 179 (298)
T PRK00098 144 VLELSAKEGEG-LDELKPLL---AGK-----VTVLAGQSGVGKST 179 (298)
T ss_pred EEEEeCCCCcc-HHHHHhhc---cCc-----eEEEECCCCCCHHH
Confidence 34566665554 34555432 222 24589999999974
No 76
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=47.90 E-value=7 Score=34.56 Aligned_cols=19 Identities=42% Similarity=0.544 Sum_probs=13.6
Q ss_pred ccceeeeeccCCCceeEEE
Q psy13769 106 FNDLRFVGRSGRGKSFTLS 124 (155)
Q Consensus 106 FNDLRFvGRSGRGKsftlt 124 (155)
-.=+=.||+||+|||==+.
T Consensus 369 G~~~aIvG~sGsGKSTLl~ 387 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3345679999999984433
No 77
>PRK00907 hypothetical protein; Provisional
Probab=47.72 E-value=10 Score=27.99 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=33.0
Q ss_pred hhhhhcccccccceeeee-ccCCCceeEEEEEEe-cCCceeeeeeeee
Q psy13769 96 TAVVKNQVAKFNDLRFVG-RSGRGKSFTLSIMVG-SSPHQIASYNKAI 141 (155)
Q Consensus 96 tavmknqvA~FNDLRFvG-RSGRGKsftltItv~-t~Ppqvaty~~AI 141 (155)
.+++.++.-.|++-+.-- .|.-||--.+|++|. |+-.|+-...+++
T Consensus 35 ~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L 82 (92)
T PRK00907 35 PRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQAL 82 (92)
T ss_pred HHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHH
Confidence 456777777888888755 477788777777776 7777776665554
No 78
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=47.49 E-value=7.4 Score=30.07 Aligned_cols=24 Identities=38% Similarity=0.643 Sum_probs=15.1
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-.+|+||.|||=-+.+-.--.+|
T Consensus 39 ~~i~G~nGsGKSTLl~~i~Gl~~p 62 (228)
T PRK10584 39 IALIGESGSGKSTLLAILAGLDDG 62 (228)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCC
Confidence 456899999998544443333333
No 79
>KOG3587|consensus
Probab=47.32 E-value=23 Score=26.97 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=16.0
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
.||.|.|+|.+.. .+++|.|+|
T Consensus 86 ~g~~F~l~I~~~~---------~~~~I~VNg 107 (143)
T KOG3587|consen 86 PGQPFDLTILVEE---------DKFQIFVNG 107 (143)
T ss_pred CCCeEEEEEEEcc---------CeEEEEECC
Confidence 4799999998864 355566665
No 80
>PLN03232 ABC transporter C family member; Provisional
Probab=47.27 E-value=7.2 Score=39.76 Aligned_cols=15 Identities=47% Similarity=0.749 Sum_probs=12.2
Q ss_pred ccceeeeeccCCCce
Q psy13769 106 FNDLRFVGRSGRGKS 120 (155)
Q Consensus 106 FNDLRFvGRSGRGKs 120 (155)
-.=+=+|||||+|||
T Consensus 1262 GekvaIVG~SGSGKS 1276 (1495)
T PLN03232 1262 SEKVGVVGRTGAGKS 1276 (1495)
T ss_pred CCEEEEECCCCCCHH
Confidence 335668999999999
No 81
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=47.22 E-value=39 Score=26.93 Aligned_cols=99 Identities=15% Similarity=0.234 Sum_probs=60.9
Q ss_pred cchhHHHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEEeecCCCCeEEEEeecCCCccchh-c-ch-
Q psy13769 18 MTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGE-L-RN- 94 (155)
Q Consensus 18 ~~~~~~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL~~VpDGT~Vtv~AGNDEn~~aE-L-RN- 94 (155)
++.+.+..+.+.|....|.-+...+|..-+..--..+ -|.|. ..++.++..++|+..+...++-| | ++
T Consensus 40 ~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~~~~~~~~--------R~~i~-~~p~~~~~~~~iR~~~~~~~sle~l~~~~ 110 (270)
T PF00437_consen 40 LSEEELERLIRRLASAAGREINERNPIQDGELPGDGI--------RVRIT-TPPVSGGPTIVIRKFSSKPFSLEDLGESG 110 (270)
T ss_dssp CGHHHHHHHHHHHHHHTTHHHHCCSSEEEEEECTTSE--------EEEEE-ETTTSTSEEEEEEEETSS--CHCCCCHTH
T ss_pred CCHHHHHHHHHHHHHHhhhhHHhhCcceeeEEeeCCe--------EEEEE-EcCCcCCcccceeccccccccHhhccCch
Confidence 3556777788888888776666677765554331222 23433 34666668899998777775544 2 21
Q ss_pred -----hhhhhhcccccccceeeeeccCCCceeEEEE
Q psy13769 95 -----CTAVVKNQVAKFNDLRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 95 -----~tavmknqvA~FNDLRFvGRSGRGKsftltI 125 (155)
....++..+..-.-+=|.|..|+||+=++.-
T Consensus 111 ~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~a 146 (270)
T PF00437_consen 111 SIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNA 146 (270)
T ss_dssp HCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHH
T ss_pred hhHHHHHHHHhhccccceEEEEECCCccccchHHHH
Confidence 1234455555556677999999999865533
No 82
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=47.21 E-value=6.9 Score=37.59 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=13.8
Q ss_pred cccccceeeeeccCCCcee
Q psy13769 103 VAKFNDLRFVGRSGRGKSF 121 (155)
Q Consensus 103 vA~FNDLRFvGRSGRGKsf 121 (155)
++.-.-+=.+||||+|||=
T Consensus 361 l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 361 LAQGEKVAILGRSGSGKST 379 (573)
T ss_pred ecCCCeEEEECCCCCCHHH
Confidence 3334456679999999984
No 83
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=47.06 E-value=7.5 Score=30.07 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=16.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||+|||=-|.+-.--.||.
T Consensus 29 ~~l~G~nGsGKSTLl~~l~Gl~~~~ 53 (236)
T cd03219 29 HGLIGPNGAGKTTLFNLISGFLRPT 53 (236)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC
Confidence 4578999999996555444444443
No 84
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=47.00 E-value=7.5 Score=30.88 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=14.4
Q ss_pred eeeeeccCCCceeEEEEEEe
Q psy13769 109 LRFVGRSGRGKSFTLSIMVG 128 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~ 128 (155)
+=++|.||+|||=-|.+-.-
T Consensus 33 ~~i~G~nGsGKSTLl~~laG 52 (258)
T PRK14241 33 TAFIGPSGCGKSTVLRTLNR 52 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 45789999999965555433
No 85
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=46.98 E-value=7.5 Score=29.73 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=15.8
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-|.+-.-..||
T Consensus 34 ~~i~G~nGsGKSTLl~~l~G~~~~ 57 (228)
T cd03257 34 LGLVGESGSGKSTLARAILGLLKP 57 (228)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 456899999999555444444444
No 86
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=46.79 E-value=7.6 Score=30.03 Aligned_cols=14 Identities=43% Similarity=0.662 Sum_probs=11.5
Q ss_pred eeeeeccCCCceeE
Q psy13769 109 LRFVGRSGRGKSFT 122 (155)
Q Consensus 109 LRFvGRSGRGKsft 122 (155)
+-++|.||.|||--
T Consensus 6 i~l~G~sGsGKSTl 19 (176)
T PRK09825 6 YILMGVSGSGKSLI 19 (176)
T ss_pred EEEECCCCCCHHHH
Confidence 45799999999863
No 87
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=46.58 E-value=7.8 Score=30.71 Aligned_cols=14 Identities=43% Similarity=0.522 Sum_probs=11.2
Q ss_pred eeeeeccCCCceeE
Q psy13769 109 LRFVGRSGRGKSFT 122 (155)
Q Consensus 109 LRFvGRSGRGKsft 122 (155)
+=.+|.||+|||=-
T Consensus 24 ~~l~G~sGsGKSTL 37 (226)
T cd03270 24 VVITGVSGSGKSSL 37 (226)
T ss_pred EEEEcCCCCCHHHH
Confidence 34689999999954
No 88
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=46.54 E-value=17 Score=31.41 Aligned_cols=39 Identities=28% Similarity=0.413 Sum_probs=26.0
Q ss_pred EEEEeecCCCccchhcchhhhhhhcccccccceeeeeccCCCce
Q psy13769 77 IVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKS 120 (155)
Q Consensus 77 ~Vtv~AGNDEn~~aELRN~tavmknqvA~FNDLRFvGRSGRGKs 120 (155)
.+.++|-+.+| ..||.+...-..+. .++=|||++|.|||
T Consensus 130 i~~vSAk~g~g-v~eL~~~l~~~~~~----~~v~~vG~~nvGKS 168 (360)
T TIGR03597 130 IILVSAKKGNG-IDELLDKIKKARNK----KDVYVVGVTNVGKS 168 (360)
T ss_pred EEEecCCCCCC-HHHHHHHHHHHhCC----CeEEEECCCCCCHH
Confidence 45677777766 45555554333221 48899999999996
No 89
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=46.43 E-value=7.8 Score=29.97 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=17.3
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||+|||=-|.|-.-..+|.
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~~~~ 53 (230)
T TIGR03410 29 TCVLGRNGVGKTTLLKTLMGLLPVK 53 (230)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 5678999999996655544444543
No 90
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=46.28 E-value=7.7 Score=34.57 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=15.9
Q ss_pred ceeeeeccCCCceeEEEEEEecCCce
Q psy13769 108 DLRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 108 DLRFvGRSGRGKsftltItv~t~Ppq 133 (155)
=+=.||+||+|||==+.+-.--.+|+
T Consensus 369 ~iaIvG~SGsGKSTLl~lL~gl~~p~ 394 (592)
T PRK10790 369 FVALVGHTGSGKSTLASLLMGYYPLT 394 (592)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC
Confidence 34568999999994333333344444
No 91
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=46.26 E-value=20 Score=26.96 Aligned_cols=41 Identities=29% Similarity=0.311 Sum_probs=26.3
Q ss_pred eEEEEeecCCCccchhcchhhhhhhcccccccceeeeeccCCCce
Q psy13769 76 TIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKS 120 (155)
Q Consensus 76 T~Vtv~AGNDEn~~aELRN~tavmknqvA~FNDLRFvGRSGRGKs 120 (155)
..+.++|-+.++ ..||.+...-+ ..+=..+-|+|.+|.|||
T Consensus 101 ~i~~vSA~~~~g-i~eL~~~l~~~---l~~~~~~~~~G~~nvGKS 141 (190)
T cd01855 101 DVILISAKKGWG-VEELINAIKKL---AKKGGDVYVVGATNVGKS 141 (190)
T ss_pred cEEEEECCCCCC-HHHHHHHHHHH---hhcCCcEEEEcCCCCCHH
Confidence 356777777666 45565444321 112246889999999998
No 92
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.24 E-value=7.9 Score=29.59 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=14.9
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-+.|-.--.+|
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~p 52 (213)
T cd03259 29 LALLGPSGCGKTTLLRLIAGLERP 52 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 446899999999444433333344
No 93
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=46.11 E-value=8 Score=29.87 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=15.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-.+|.||.|||=-|.+-.-..||
T Consensus 29 ~~l~G~nGsGKSTLl~~l~Gl~~p 52 (232)
T cd03218 29 VGLLGPNGAGKTTTFYMIVGLVKP 52 (232)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 557899999998554443333344
No 94
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=46.08 E-value=8 Score=29.56 Aligned_cols=24 Identities=42% Similarity=0.553 Sum_probs=14.9
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-|.+-.--.||
T Consensus 33 ~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 33 VAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred EEEEcCCCCCHHHHHHHHhCCcCC
Confidence 346899999998544433333344
No 95
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.07 E-value=7.9 Score=30.50 Aligned_cols=17 Identities=47% Similarity=0.741 Sum_probs=12.6
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=.+|+||.|||=-|.+
T Consensus 32 ~~i~G~nGsGKSTLl~~ 48 (250)
T PRK14245 32 VAFIGPSGCGKSTFLRL 48 (250)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34689999999955444
No 96
>PHA03260 Capsid triplex subunit 2; Provisional
Probab=46.01 E-value=34 Score=31.12 Aligned_cols=79 Identities=29% Similarity=0.408 Sum_probs=59.7
Q ss_pred CCCccccCCCC-CcceEEEEee-----cCC------CCeEEEEeecCCCc-------cchhcchhhhhhhccccccc---
Q psy13769 50 LPTHWRSNKSL-PIAFKVVVLD-----DVM------DGTIVTIRAGNDDN-------YCGELRNCTAVVKNQVAKFN--- 107 (155)
Q Consensus 50 LP~HWRsNKtL-P~~FkVvaL~-----~Vp------DGT~Vtv~AGNDEn-------~~aELRN~tavmknqvA~FN--- 107 (155)
.-..|+.-.|| |..||-=-|| ++| -|+-|.++|-|||. +-+|-||-.. |.|-
T Consensus 7 ~~~~w~~~q~~~~~~~~appl~~~~~e~~pprivas~g~fvr~~~~~~e~~~~~~p~~hge~~~~~~------~~~p~~~ 80 (339)
T PHA03260 7 MSDGWIAAQSLHGAEFKAPPLGEKMIEDLPPRIVASMGIFVRLMARNDEGAKLFHPSFHGEKRNVVN------AHFPAHH 80 (339)
T ss_pred cccchhhhhhccCCCCcCCCcchhhhhhCCchhhhccceEEEEEeecCCCCcccccccccccccccc------ccCCccc
Confidence 44579888877 5778877774 788 89999999999995 5689998652 3331
Q ss_pred -----ceeeeeccCCCceeEEEEEEecCCcee
Q psy13769 108 -----DLRFVGRSGRGKSFTLSIMVGSSPHQI 134 (155)
Q Consensus 108 -----DLRFvGRSGRGKsftltItv~t~Ppqv 134 (155)
-.-||-|+-.|--=.--|.+++.|.+-
T Consensus 81 ~~~~~~~a~v~~~~~~~~~~~~~~~~~~p~kq 112 (339)
T PHA03260 81 DGPKDRVAFVQDDLAGDLSAGLIHAECTPMKQ 112 (339)
T ss_pred CCccceEEEEecccccccccccEEEEecccce
Confidence 245888888887666678888888743
No 97
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=45.85 E-value=8.1 Score=29.19 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=16.1
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-|.+-.-.-+|
T Consensus 27 ~~i~G~nGsGKSTLl~~l~G~~~~ 50 (206)
T TIGR03608 27 YAIIGESGSGKSTLLNIIGLLEKF 50 (206)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 446899999998655544444444
No 98
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=45.71 E-value=8.1 Score=30.34 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=15.4
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|+||.|||=-+.+-.--.+|
T Consensus 14 ~~i~G~nGsGKSTLl~~l~Gl~~p 37 (230)
T TIGR01184 14 ISLIGHSGCGKSTLLNLISGLAQP 37 (230)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 457899999998554443333344
No 99
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.69 E-value=8.1 Score=29.93 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=15.2
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-+.+-.--.||
T Consensus 34 ~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 34 FGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 457899999998544433333343
No 100
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=45.38 E-value=8.3 Score=29.56 Aligned_cols=25 Identities=40% Similarity=0.650 Sum_probs=16.3
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+-++|.||.|||=-|.+-.--.||.
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (201)
T cd03231 29 LQVTGPNGSGKTTLLRILAGLSPPL 53 (201)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4578999999995554443344443
No 101
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=45.26 E-value=8.1 Score=35.32 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=17.5
Q ss_pred cccceeeeeccCCCceeEEEEEEecCCce
Q psy13769 105 KFNDLRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 105 ~FNDLRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+-.-.-.||+||.|||=-+.+-.--.+|+
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~ 532 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGLYQPW 532 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 33456689999999994333333334443
No 102
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=44.91 E-value=8.6 Score=28.80 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=17.3
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||.|||=-|.+-.--.||.
T Consensus 29 ~~l~G~nGsGKSTLl~~i~G~~~~~ 53 (163)
T cd03216 29 HALLGENGAGKSTLMKILSGLYKPD 53 (163)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3468999999996666554455554
No 103
>PLN03130 ABC transporter C family member; Provisional
Probab=44.82 E-value=8.2 Score=39.93 Aligned_cols=13 Identities=54% Similarity=0.935 Sum_probs=11.4
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
=+=+|||||+|||
T Consensus 1267 kVaIVGrSGSGKS 1279 (1622)
T PLN03130 1267 KVGIVGRTGAGKS 1279 (1622)
T ss_pred EEEEECCCCCCHH
Confidence 4668999999998
No 104
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=44.81 E-value=8.5 Score=30.59 Aligned_cols=24 Identities=46% Similarity=0.679 Sum_probs=15.6
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-+.|----.+|
T Consensus 32 ~~l~G~nGsGKSTLl~~l~Gl~~~ 55 (254)
T PRK10418 32 LALVGGSGSGKSLTCAAALGILPA 55 (254)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 457899999999554443333344
No 105
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=44.67 E-value=8.6 Score=30.28 Aligned_cols=12 Identities=42% Similarity=0.883 Sum_probs=10.2
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=|||++|.||+
T Consensus 4 imliG~~g~GKT 15 (143)
T PF10662_consen 4 IMLIGPSGSGKT 15 (143)
T ss_pred EEEECCCCCCHH
Confidence 348999999997
No 106
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=44.67 E-value=11 Score=29.16 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=11.4
Q ss_pred eeccCCCceeEEE
Q psy13769 112 VGRSGRGKSFTLS 124 (155)
Q Consensus 112 vGRSGRGKsftlt 124 (155)
.|-+|.||+||+.
T Consensus 30 yG~tGsGKT~Tm~ 42 (186)
T cd01363 30 YGQTGSGKTYTME 42 (186)
T ss_pred ECCCCCcceEecC
Confidence 5899999999975
No 107
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=44.67 E-value=8.8 Score=29.79 Aligned_cols=16 Identities=38% Similarity=0.673 Sum_probs=12.2
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+=++|.||+|||=-+.
T Consensus 36 ~~l~G~nGsGKSTLlk 51 (226)
T cd03234 36 MAILGSSGSGKTTLLD 51 (226)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5678999999984333
No 108
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=44.60 E-value=8.6 Score=31.23 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=15.9
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|+||.|||=-+.+-.-.-+|
T Consensus 33 ~~i~G~NGsGKSTLl~~l~Gl~~p 56 (277)
T PRK13652 33 IAVIGPNGAGKSTLFRHFNGILKP 56 (277)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 347899999999655444444344
No 109
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=44.28 E-value=8.7 Score=36.65 Aligned_cols=20 Identities=40% Similarity=0.350 Sum_probs=14.6
Q ss_pred ccccceeeeeccCCCceeEE
Q psy13769 104 AKFNDLRFVGRSGRGKSFTL 123 (155)
Q Consensus 104 A~FNDLRFvGRSGRGKsftl 123 (155)
.+++-.=+||+||.|||=-+
T Consensus 345 ~~g~~talvG~SGaGKSTLl 364 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLL 364 (559)
T ss_pred cCCcEEEEECCCCCCHHHHH
Confidence 34445668999999998443
No 110
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=44.22 E-value=8.8 Score=30.26 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=15.5
Q ss_pred eeeeccCCCceeEEEEEEecCCc
Q psy13769 110 RFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 110 RFvGRSGRGKsftltItv~t~Pp 132 (155)
=.+|+||.|||=-|.+-.--.+|
T Consensus 34 ~i~G~nGsGKSTLl~~l~Gl~~~ 56 (251)
T PRK14249 34 AIIGPSGCGKSTLLRALNRMNDI 56 (251)
T ss_pred EEECCCCCCHHHHHHHHhcccCc
Confidence 46899999999655554444344
No 111
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=44.21 E-value=8.9 Score=29.20 Aligned_cols=19 Identities=37% Similarity=0.639 Sum_probs=13.3
Q ss_pred eeeeeccCCCceeEEEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSIMV 127 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv 127 (155)
+=.+|.||.|||=-|.+-.
T Consensus 29 ~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03301 29 VVLLGPSGCGKTTTLRMIA 47 (213)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4578999999985444433
No 112
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=44.17 E-value=8.9 Score=29.37 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=15.2
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||+|||=-|.+-.-..+|
T Consensus 34 ~~i~G~nGsGKSTLl~~i~G~~~~ 57 (221)
T TIGR02211 34 VAIVGSSGSGKSTLLHLLGGLDNP 57 (221)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 346899999998555443333344
No 113
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=44.05 E-value=8.8 Score=33.83 Aligned_cols=14 Identities=50% Similarity=0.721 Sum_probs=11.1
Q ss_pred ceeeeeccCCCcee
Q psy13769 108 DLRFVGRSGRGKSF 121 (155)
Q Consensus 108 DLRFvGRSGRGKsf 121 (155)
=+=.+|+||+|||=
T Consensus 368 ~i~IvG~sGsGKST 381 (576)
T TIGR02204 368 TVALVGPSGAGKST 381 (576)
T ss_pred EEEEECCCCCCHHH
Confidence 34569999999983
No 114
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=43.91 E-value=9 Score=29.19 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=16.3
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+-.+|.||.|||=-|.+-.--.+|.
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl~~p~ 53 (205)
T cd03226 29 IALTGKNGAGKTTLAKILAGLIKES 53 (205)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4568999999995555444444443
No 115
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=43.88 E-value=8.9 Score=30.58 Aligned_cols=17 Identities=47% Similarity=0.632 Sum_probs=12.6
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=.+|.||.|||=-+.+
T Consensus 42 ~~i~G~nGsGKSTLl~~ 58 (260)
T PRK10744 42 TAFIGPSGCGKSTLLRT 58 (260)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45689999999854444
No 116
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=43.77 E-value=9.1 Score=29.55 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=15.1
Q ss_pred eeeeeccCCCceeEEEEEEecC
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSS 130 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~ 130 (155)
+=.+|.||.|||=-+.+-.--.
T Consensus 29 ~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 29 TALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 4568999999986555543333
No 117
>PRK05541 adenylylsulfate kinase; Provisional
Probab=43.73 E-value=9.2 Score=28.45 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=|.|-||.|||
T Consensus 10 I~i~G~~GsGKs 21 (176)
T PRK05541 10 IWITGLAGSGKT 21 (176)
T ss_pred EEEEcCCCCCHH
Confidence 568999999997
No 118
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=43.69 E-value=11 Score=32.92 Aligned_cols=43 Identities=30% Similarity=0.483 Sum_probs=25.6
Q ss_pred cccccceeeeeccCCCceeEEEEEEecCCceeeeeeeeeEEeeeC-CCCC
Q psy13769 103 VAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG-PREP 151 (155)
Q Consensus 103 vA~FNDLRFvGRSGRGKsftltItv~t~Ppqvaty~~AIKVTVDG-PReP 151 (155)
+++-.=|=.||.||+|||=-..+-+--..|.- =.|++|| |..|
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~------G~I~~~G~~~~~ 73 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSS------GSILLDGKPLAP 73 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCC------ceEEECCcccCc
Confidence 34444567799999999844444333333322 2577888 4444
No 119
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=43.66 E-value=8.8 Score=39.21 Aligned_cols=15 Identities=47% Similarity=0.716 Sum_probs=12.2
Q ss_pred ccceeeeeccCCCce
Q psy13769 106 FNDLRFVGRSGRGKS 120 (155)
Q Consensus 106 FNDLRFvGRSGRGKs 120 (155)
-.=+=+|||||+|||
T Consensus 1312 GekiaIVGrTGsGKS 1326 (1522)
T TIGR00957 1312 GEKVGIVGRTGAGKS 1326 (1522)
T ss_pred CCEEEEECCCCCCHH
Confidence 345668999999998
No 120
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=43.55 E-value=78 Score=29.46 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=48.0
Q ss_pred ceEEEEeecCCCCeEEEEee-cCCCccchh-c---chhhhhhhcccccc--cceeeeeccCCCceeEEEEEE-ecCCcee
Q psy13769 63 AFKVVVLDDVMDGTIVTIRA-GNDDNYCGE-L---RNCTAVVKNQVAKF--NDLRFVGRSGRGKSFTLSIMV-GSSPHQI 134 (155)
Q Consensus 63 ~FkVvaL~~VpDGT~Vtv~A-GNDEn~~aE-L---RN~tavmknqvA~F--NDLRFvGRSGRGKsftltItv-~t~Ppqv 134 (155)
.-.++-|+...+|+.|+|.. -+.+.+.-+ + .-....+++.+.++ +.+..+--+ +..++.+|++ ..+.-.+
T Consensus 711 ~~~~~~lg~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~i~~~~~~~~l~ 788 (843)
T PF09586_consen 711 RNQLLNLGYFEKGQTVTITFSLSKGEYDFDNIQLYTLDYDALEKAVNQLKKNGLKNTKYS--NNHISGTITATSKDGYLV 788 (843)
T ss_pred ceEEEEeeecCCCcEEEEEEEecCCcccccCCEEEEcCHHHHHHHHHhhhhcCcEEEEEe--CCEEEEEEEecCCCcEEE
Confidence 35678889999999999988 222222210 0 01112222233222 234444333 6677777877 3333222
Q ss_pred e--eeeeeeEEeeeCCCC
Q psy13769 135 A--SYNKAIKVTVDGPRE 150 (155)
Q Consensus 135 a--ty~~AIKVTVDGPRe 150 (155)
- -|.+.-|++|||=+.
T Consensus 789 ~sipy~~GW~~~vdGk~~ 806 (843)
T PF09586_consen 789 LSIPYDKGWKAYVDGKKV 806 (843)
T ss_pred EEeccCCCCEEEECCEEc
Confidence 2 399999999999654
No 121
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.52 E-value=9.2 Score=29.93 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=15.8
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-|.+-.--.+|
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (239)
T cd03296 31 VALLGPSGSGKTTLLRLIAGLERP 54 (239)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 457899999999555443333344
No 122
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=43.46 E-value=9.3 Score=29.92 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=15.6
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-.+|.||+|||=-|-+-..-.||
T Consensus 16 ~~l~G~NGsGKSTLlk~i~Gl~~~ 39 (213)
T PRK15177 16 IGILAAPGSGKTTLTRLLCGLDAP 39 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCCccC
Confidence 346899999998655443333344
No 123
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=43.41 E-value=9.5 Score=29.56 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=12.8
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=.+|.||.|||=-|.+
T Consensus 29 ~~i~G~nGsGKSTLl~~ 45 (243)
T TIGR01978 29 HAIMGPNGSGKSTLSKT 45 (243)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45789999999954444
No 124
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=43.40 E-value=9 Score=34.05 Aligned_cols=14 Identities=43% Similarity=0.586 Sum_probs=11.7
Q ss_pred ceeeeeccCCCcee
Q psy13769 108 DLRFVGRSGRGKSF 121 (155)
Q Consensus 108 DLRFvGRSGRGKsf 121 (155)
=.-++|+||.|||=
T Consensus 351 ~~aivG~sGsGKST 364 (547)
T PRK10522 351 LLFLIGGNGSGKST 364 (547)
T ss_pred EEEEECCCCCCHHH
Confidence 45689999999993
No 125
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=43.38 E-value=9.3 Score=30.14 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=15.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|+||.|||=-|.+-.--.+|
T Consensus 32 ~~i~G~nGsGKSTLl~~l~Gl~~p 55 (241)
T PRK14250 32 YTIVGPSGAGKSTLIKLINRLIDP 55 (241)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 446899999999555443333344
No 126
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=43.35 E-value=9.4 Score=28.78 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=14.4
Q ss_pred eeeeccCCCceeEEEEEEecCCc
Q psy13769 110 RFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 110 RFvGRSGRGKsftltItv~t~Pp 132 (155)
=.+|.||.|||=-+.+-.-..+|
T Consensus 29 ~l~G~nGsGKStLl~~i~G~~~~ 51 (180)
T cd03214 29 GILGPNGAGKSTLLKTLAGLLKP 51 (180)
T ss_pred EEECCCCCCHHHHHHHHhCCCCC
Confidence 36899999999544443333344
No 127
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=43.29 E-value=9.2 Score=30.76 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=16.3
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||.|||=-|.+-.-..+|.
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl~~p~ 54 (271)
T PRK13638 30 TGLVGANGCGKSTLFMNLSGLLRPQ 54 (271)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC
Confidence 4578999999995554443334443
No 128
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=43.25 E-value=9.3 Score=30.03 Aligned_cols=16 Identities=44% Similarity=0.561 Sum_probs=12.1
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+-.+|+||.|||=-+.
T Consensus 33 ~~i~G~nGsGKSTLl~ 48 (251)
T PRK14251 33 TALIGPSGCGKSTFLR 48 (251)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4578999999984433
No 129
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=43.24 E-value=9.4 Score=28.63 Aligned_cols=24 Identities=38% Similarity=0.660 Sum_probs=15.1
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-++|+||.|||=-|.+-.--.||
T Consensus 31 ~~i~G~nGsGKStLl~~l~G~~~~ 54 (178)
T cd03247 31 IALLGRSGSGKSTLLQLLTGDLKP 54 (178)
T ss_pred EEEECCCCCCHHHHHHHHhccCCC
Confidence 457899999998544433333344
No 130
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=43.05 E-value=9.3 Score=32.14 Aligned_cols=14 Identities=57% Similarity=0.729 Sum_probs=10.7
Q ss_pred eeeeccCCCceeEE
Q psy13769 110 RFVGRSGRGKSFTL 123 (155)
Q Consensus 110 RFvGRSGRGKsftl 123 (155)
=.+|.||+|||==|
T Consensus 35 aI~GpSGSGKSTLL 48 (226)
T COG1136 35 AIVGPSGSGKSTLL 48 (226)
T ss_pred EEECCCCCCHHHHH
Confidence 35799999998433
No 131
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=42.93 E-value=9.5 Score=29.91 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=12.3
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=++|.||.|||=-+.+
T Consensus 36 ~~i~G~nGsGKSTLl~~ 52 (252)
T CHL00131 36 HAIMGPNGSGKSTLSKV 52 (252)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34689999999854443
No 132
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=42.90 E-value=9.4 Score=29.49 Aligned_cols=12 Identities=42% Similarity=0.695 Sum_probs=10.0
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.||+|||
T Consensus 9 i~I~G~sGsGKS 20 (207)
T TIGR00235 9 IGIGGGSGSGKT 20 (207)
T ss_pred EEEECCCCCCHH
Confidence 347899999998
No 133
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=42.83 E-value=9.5 Score=30.07 Aligned_cols=16 Identities=44% Similarity=0.567 Sum_probs=11.8
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+=++|.||.|||=-+.
T Consensus 31 ~~i~G~nGsGKSTLl~ 46 (246)
T PRK14269 31 TALIGASGCGKSTFLR 46 (246)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3468999999994443
No 134
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=42.77 E-value=9.5 Score=30.11 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=13.2
Q ss_pred eeeeeccCCCceeEEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSIM 126 (155)
Q Consensus 109 LRFvGRSGRGKsftltIt 126 (155)
.-.+|+||.|||=-+.+-
T Consensus 35 ~~i~G~nGsGKSTLl~~l 52 (253)
T PRK14261 35 TALIGPSGCGKSTLLRCF 52 (253)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 446899999998655443
No 135
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=42.64 E-value=9.4 Score=39.01 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=12.6
Q ss_pred cccceeeeeccCCCce
Q psy13769 105 KFNDLRFVGRSGRGKS 120 (155)
Q Consensus 105 ~FNDLRFvGRSGRGKs 120 (155)
.-.=+-+|||||.|||
T Consensus 1244 ~GekvaIvGrSGsGKS 1259 (1490)
T TIGR01271 1244 GGQRVGLLGRTGSGKS 1259 (1490)
T ss_pred CCCEEEEECCCCCCHH
Confidence 3345678999999998
No 136
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=42.60 E-value=9.7 Score=29.19 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=15.9
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-++|.||.|||=-+.+-.--.||
T Consensus 30 ~~l~G~nGsGKSTLl~~l~G~~~p 53 (204)
T PRK13538 30 VQIEGPNGAGKTSLLRILAGLARP 53 (204)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 456899999998655544434344
No 137
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=42.55 E-value=10 Score=29.50 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=15.2
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-+.+-.--.||
T Consensus 32 ~~l~G~nGsGKSTLl~~i~G~~~~ 55 (238)
T cd03249 32 VALVGSSGCGKSTVVSLLERFYDP 55 (238)
T ss_pred EEEEeCCCCCHHHHHHHHhccCCC
Confidence 345899999998655443333333
No 138
>PRK00300 gmk guanylate kinase; Provisional
Probab=42.53 E-value=10 Score=28.66 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|-||+|||
T Consensus 8 i~i~G~sGsGKs 19 (205)
T PRK00300 8 IVLSGPSGAGKS 19 (205)
T ss_pred EEEECCCCCCHH
Confidence 458999999998
No 139
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=42.50 E-value=9.8 Score=29.59 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=14.9
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-|.+-.--.+|
T Consensus 31 ~~l~G~nGsGKSTLl~~l~Gl~~~ 54 (243)
T TIGR02315 31 VAIIGPSGAGKSTLLRCINRLVEP 54 (243)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC
Confidence 446899999998544433333343
No 140
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=42.48 E-value=9.8 Score=27.14 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|++|.|||
T Consensus 6 v~vvG~~~~GKT 17 (165)
T cd01864 6 IILIGDSNVGKT 17 (165)
T ss_pred EEEECCCCCCHH
Confidence 448999999997
No 141
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=42.36 E-value=9.7 Score=31.64 Aligned_cols=15 Identities=40% Similarity=0.711 Sum_probs=11.9
Q ss_pred ceeeeeccCCCceeE
Q psy13769 108 DLRFVGRSGRGKSFT 122 (155)
Q Consensus 108 DLRFvGRSGRGKsft 122 (155)
=+-++|+||.|||=-
T Consensus 32 ~~~IvG~nGsGKSTL 46 (275)
T cd03289 32 RVGLLGRTGSGKSTL 46 (275)
T ss_pred EEEEECCCCCCHHHH
Confidence 356799999999843
No 142
>PRK03846 adenylylsulfate kinase; Provisional
Probab=42.23 E-value=9.9 Score=29.27 Aligned_cols=14 Identities=57% Similarity=0.698 Sum_probs=11.5
Q ss_pred cceeeeeccCCCce
Q psy13769 107 NDLRFVGRSGRGKS 120 (155)
Q Consensus 107 NDLRFvGRSGRGKs 120 (155)
.=+=|+|.||.|||
T Consensus 25 ~~i~i~G~~GsGKS 38 (198)
T PRK03846 25 VVLWFTGLSGSGKS 38 (198)
T ss_pred EEEEEECCCCCCHH
Confidence 34678999999996
No 143
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=42.23 E-value=9.8 Score=30.63 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=12.1
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+=++|+||.|||=-|.
T Consensus 42 ~~i~G~NGsGKSTLl~ 57 (267)
T PRK15112 42 LAIIGENGSGKSTLAK 57 (267)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 4578999999984433
No 144
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=42.23 E-value=9.9 Score=30.14 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=12.7
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=++|+||.|||=-|.+
T Consensus 31 ~~l~G~nGsGKSTLl~~ 47 (255)
T PRK11231 31 TALIGPNGCGKSTLLKC 47 (255)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45789999999854443
No 145
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=42.18 E-value=10 Score=27.82 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 22 i~ilG~~~~GKS 33 (190)
T cd00879 22 ILFLGLDNAGKT 33 (190)
T ss_pred EEEECCCCCCHH
Confidence 468999999997
No 146
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=42.03 E-value=10 Score=30.46 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=15.1
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-++|.||.|||=-+.+-.-..||
T Consensus 40 ~~i~G~nGsGKSTLl~~l~Gl~~~ 63 (265)
T PRK10575 40 TGLIGHNGSGKSTLLKMLGRHQPP 63 (265)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCC
Confidence 447899999998544433333343
No 147
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=42.02 E-value=9.8 Score=32.09 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=14.8
Q ss_pred ceeeeeccCCCceeEEEEEEe
Q psy13769 108 DLRFVGRSGRGKSFTLSIMVG 128 (155)
Q Consensus 108 DLRFvGRSGRGKsftltItv~ 128 (155)
=+=++|.||.|||=-+.+-.-
T Consensus 35 ~~~ivG~sGsGKSTLl~~i~G 55 (330)
T PRK15093 35 IRGLVGESGSGKSLIAKAICG 55 (330)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 356899999999955544333
No 148
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=42.00 E-value=9.9 Score=31.61 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=21.8
Q ss_pred EEEeecCCCccchhcchhhhhhhcccccccceeeeeccCCCcee
Q psy13769 78 VTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSF 121 (155)
Q Consensus 78 Vtv~AGNDEn~~aELRN~tavmknqvA~FNDLRFvGRSGRGKsf 121 (155)
+.++|-+.++ ..+|+...+ + .-.=|+|.||.|||=
T Consensus 142 ~~vSA~~g~g-i~~L~~~L~---~-----k~~~~~G~sg~GKST 176 (287)
T cd01854 142 LAVSAKTGEG-LDELREYLK---G-----KTSVLVGQSGVGKST 176 (287)
T ss_pred EEEECCCCcc-HHHHHhhhc---c-----ceEEEECCCCCCHHH
Confidence 4566665554 345554332 2 236699999999984
No 149
>PRK10908 cell division protein FtsE; Provisional
Probab=41.90 E-value=10 Score=29.27 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=15.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||.|||=-+.+-.--.||+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G~~~~~ 55 (222)
T PRK10908 31 AFLTGHSGAGKSTLLKLICGIERPS 55 (222)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3478999999985444433333443
No 150
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=41.86 E-value=9.9 Score=33.30 Aligned_cols=29 Identities=31% Similarity=0.427 Sum_probs=18.1
Q ss_pred cccceeeeeccCCCceeEEEEEEecCCce
Q psy13769 105 KFNDLRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 105 ~FNDLRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+-.=.-++|.||.|||=-+.+-.--.+|+
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~ 375 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLGFVDPT 375 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 33345679999999985444433344443
No 151
>PRK06921 hypothetical protein; Provisional
Probab=41.83 E-value=7 Score=32.46 Aligned_cols=18 Identities=33% Similarity=0.663 Sum_probs=14.7
Q ss_pred ccceeeeeccCCCceeEE
Q psy13769 106 FNDLRFVGRSGRGKSFTL 123 (155)
Q Consensus 106 FNDLRFvGRSGRGKsftl 123 (155)
++-|=|.|-+|.||++-+
T Consensus 117 ~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL 134 (266)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 455889999999999744
No 152
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=41.64 E-value=10 Score=28.84 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=15.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.+|.|||=-+.+-.--.||
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~~~ 52 (195)
T PRK13541 29 TYIKGANGCGKSSLLRMIAGIMQP 52 (195)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 346899999998655444443344
No 153
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=41.63 E-value=10 Score=29.72 Aligned_cols=17 Identities=41% Similarity=0.550 Sum_probs=12.7
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+-.+|.||.|||=-|.+
T Consensus 34 ~~i~G~nGsGKSTLl~~ 50 (252)
T PRK14239 34 TALIGPSGSGKSTLLRS 50 (252)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45789999999854444
No 154
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.61 E-value=10 Score=28.37 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=12.9
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+-.+|.||.|||=-+.+
T Consensus 29 ~~i~G~nGsGKStLl~~ 45 (173)
T cd03230 29 YGLLGPNGAGKTTLIKI 45 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 55789999999855444
No 155
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=41.59 E-value=10 Score=29.61 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=14.9
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-+.+-.--.||
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~~p 53 (236)
T TIGR03864 30 VALLGPNGAGKSTLFSLLTRLYVA 53 (236)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC
Confidence 346899999998544443333344
No 156
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=41.56 E-value=10 Score=29.12 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=12.0
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+=.+|.||.|||=-+.
T Consensus 29 ~~i~G~nGsGKStLl~ 44 (200)
T cd03217 29 HALMGPNGSGKSTLAK 44 (200)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4568999999995443
No 157
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.47 E-value=12 Score=28.59 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=16.2
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-.+|+||.|||=-|.+-.--.||
T Consensus 27 ~~l~G~nGsGKSTLl~~l~gl~~~ 50 (211)
T cd03298 27 TAIVGPSGSGKSTLLNLIAGFETP 50 (211)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 567899999998555444333444
No 158
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=41.46 E-value=11 Score=27.62 Aligned_cols=13 Identities=54% Similarity=0.920 Sum_probs=11.1
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
++=++|.+|.|||
T Consensus 26 ~v~ivG~~~~GKS 38 (196)
T PRK00454 26 EIAFAGRSNVGKS 38 (196)
T ss_pred EEEEEcCCCCCHH
Confidence 4668999999997
No 159
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=41.44 E-value=10 Score=30.36 Aligned_cols=16 Identities=44% Similarity=0.561 Sum_probs=12.5
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+-++|.||.|||=-|.
T Consensus 50 ~~i~G~nGsGKSTLl~ 65 (268)
T PRK14248 50 TALIGPSGCGKSTFLR 65 (268)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5689999999985443
No 160
>PTZ00243 ABC transporter; Provisional
Probab=41.43 E-value=10 Score=39.13 Aligned_cols=18 Identities=44% Similarity=0.634 Sum_probs=13.2
Q ss_pred ccccceeeeeccCCCcee
Q psy13769 104 AKFNDLRFVGRSGRGKSF 121 (155)
Q Consensus 104 A~FNDLRFvGRSGRGKsf 121 (155)
+.-.=+=+|||||+|||=
T Consensus 1334 ~~GekVaIVGrTGSGKST 1351 (1560)
T PTZ00243 1334 APREKVGIVGRTGSGKST 1351 (1560)
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 333456679999999983
No 161
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=41.39 E-value=10 Score=29.16 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=15.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-.+|.||+|||=-|.+-.-..+|
T Consensus 37 ~~l~G~nGsGKSTLl~~i~G~~~~ 60 (224)
T TIGR02324 37 VALSGPSGAGKSTLLKSLYANYLP 60 (224)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 457899999998555444334444
No 162
>PRK04213 GTP-binding protein; Provisional
Probab=41.35 E-value=10 Score=28.19 Aligned_cols=12 Identities=67% Similarity=0.974 Sum_probs=10.8
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+-++|++|.|||
T Consensus 12 i~i~G~~~~GKS 23 (201)
T PRK04213 12 IVFVGRSNVGKS 23 (201)
T ss_pred EEEECCCCCCHH
Confidence 678999999997
No 163
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.32 E-value=10 Score=29.58 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=11.5
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
.=++|+||.|||=-+
T Consensus 29 ~~i~G~nGsGKSTLl 43 (232)
T cd03300 29 FTLLGPSGCGKTTLL 43 (232)
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999998433
No 164
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=41.26 E-value=10 Score=29.79 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=12.7
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=.+|.||.|||=-|.+
T Consensus 35 ~~i~G~nGsGKSTLl~~ 51 (253)
T PRK14242 35 TALIGPSGCGKSTFLRC 51 (253)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45789999999955444
No 165
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=41.23 E-value=13 Score=29.61 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=11.9
Q ss_pred cccc-e-eeeeccCCCcee
Q psy13769 105 KFND-L-RFVGRSGRGKSF 121 (155)
Q Consensus 105 ~FND-L-RFvGRSGRGKsf 121 (155)
.|++ + =|+|++|.|||=
T Consensus 20 ~~~~g~n~i~G~NgsGKS~ 38 (213)
T cd03277 20 RPGPSLNMIIGPNGSGKSS 38 (213)
T ss_pred ecCCCeEEEECCCCCCHHH
Confidence 4544 2 478999999973
No 166
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.22 E-value=11 Score=28.46 Aligned_cols=15 Identities=47% Similarity=0.707 Sum_probs=11.3
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+=++|.||.|||=-+
T Consensus 29 ~~i~G~nGsGKSTLl 43 (178)
T cd03229 29 VALLGPSGSGKSTLL 43 (178)
T ss_pred EEEECCCCCCHHHHH
Confidence 346899999998433
No 167
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=41.20 E-value=11 Score=29.48 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=15.9
Q ss_pred ceeeeeccCCCceeEEEEEEecCCc
Q psy13769 108 DLRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 108 DLRFvGRSGRGKsftltItv~t~Pp 132 (155)
=+=.+|+||.|||=-|.+-.--.+|
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~~ 51 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFLTP 51 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3557899999999544443333344
No 168
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.07 E-value=11 Score=27.58 Aligned_cols=15 Identities=47% Similarity=0.713 Sum_probs=11.2
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
.=++|.+|.|||=-+
T Consensus 28 ~~i~G~nGsGKStll 42 (157)
T cd00267 28 VALVGPNGSGKSTLL 42 (157)
T ss_pred EEEECCCCCCHHHHH
Confidence 347899999998433
No 169
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.06 E-value=11 Score=29.25 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=15.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-+.+-.--.+|
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl~~~ 53 (241)
T cd03256 30 VALIGPSGAGKSTLLRCLNGLVEP 53 (241)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC
Confidence 456899999998555444333344
No 170
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=40.88 E-value=11 Score=30.01 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=15.3
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||+|||=-+.+-.-..+|
T Consensus 35 ~~i~G~nGsGKSTLl~~l~Gl~~p 58 (258)
T PRK11701 35 LGIVGESGSGKTTLLNALSARLAP 58 (258)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 346899999999554443333344
No 171
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=40.87 E-value=11 Score=25.52 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=10.1
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+-++|.+|.|||
T Consensus 6 i~~~G~~g~GKt 17 (168)
T cd04163 6 VAIVGRPNVGKS 17 (168)
T ss_pred EEEECCCCCCHH
Confidence 568999999994
No 172
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=40.85 E-value=11 Score=30.12 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=12.7
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+-++|.||.|||=-|.+
T Consensus 36 ~~l~G~nGsGKSTLlk~ 52 (259)
T PRK14260 36 TAIIGPSGCGKSTFIKT 52 (259)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 55789999999844443
No 173
>PRK00341 hypothetical protein; Provisional
Probab=40.76 E-value=14 Score=26.85 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=30.5
Q ss_pred CCCccchhcchhhhhhhcccccccceeeee-ccCCCceeEEEEEEe-cCCceeeeeeeee
Q psy13769 84 NDDNYCGELRNCTAVVKNQVAKFNDLRFVG-RSGRGKSFTLSIMVG-SSPHQIASYNKAI 141 (155)
Q Consensus 84 NDEn~~aELRN~tavmknqvA~FNDLRFvG-RSGRGKsftltItv~-t~Ppqvaty~~AI 141 (155)
+.+.+.+++. ++++.+. .|.+-..-. .|.-||--.+||+|. ++..|+-.+.+++
T Consensus 26 ~~~~~~~~V~---~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~q~~~iy~~L 81 (91)
T PRK00341 26 TGVGFKDLVI---EILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATDEDQLQDINSAL 81 (91)
T ss_pred CchhHHHHHH---HHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECCHHHHHHHHHHH
Confidence 4444444443 4555554 776665543 466677666666665 5666665554443
No 174
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=40.75 E-value=11 Score=33.78 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=17.5
Q ss_pred cccceeeeeccCCCceeEEEEEEecCCc
Q psy13769 105 KFNDLRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 105 ~FNDLRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-.=+=.+|.||+|||=-+.+-.-..+|
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p 387 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFDP 387 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 3344567999999999444443334444
No 175
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=40.72 E-value=11 Score=29.65 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=13.4
Q ss_pred eeeeeccCCCceeEEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSIM 126 (155)
Q Consensus 109 LRFvGRSGRGKsftltIt 126 (155)
+=.+|.||.|||=-|.+-
T Consensus 32 ~~i~G~nGsGKSTLl~~i 49 (250)
T PRK14240 32 TALIGPSGCGKSTFLRTL 49 (250)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 457899999999655543
No 176
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=40.61 E-value=11 Score=29.56 Aligned_cols=16 Identities=38% Similarity=0.507 Sum_probs=12.2
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+-++|.||.|||=-|.
T Consensus 24 ~~l~G~nG~GKSTLl~ 39 (176)
T cd03238 24 VVVTGVSGSGKSTLVN 39 (176)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4578999999995443
No 177
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=40.57 E-value=11 Score=28.46 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=16.6
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+-.+|.||.|||=-|.+-.-..+|.
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (182)
T cd03215 29 VGIAGLVGNGQTELAEALFGLRPPA 53 (182)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4568999999996555444444554
No 178
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=40.55 E-value=14 Score=30.94 Aligned_cols=12 Identities=42% Similarity=1.016 Sum_probs=10.9
Q ss_pred eeccCCCceeEE
Q psy13769 112 VGRSGRGKSFTL 123 (155)
Q Consensus 112 vGRSGRGKsftl 123 (155)
.|-+|+||+||+
T Consensus 80 yG~tgSGKT~Tm 91 (341)
T cd01372 80 YGQTGSGKTYTM 91 (341)
T ss_pred ecCCCCCCcEEe
Confidence 589999999997
No 179
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=40.55 E-value=11 Score=29.67 Aligned_cols=18 Identities=44% Similarity=0.706 Sum_probs=13.2
Q ss_pred eeeeeccCCCceeEEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSIM 126 (155)
Q Consensus 109 LRFvGRSGRGKsftltIt 126 (155)
+=++|+||.|||=-+.+-
T Consensus 29 ~~l~G~nGsGKSTLl~~i 46 (237)
T TIGR00968 29 VALLGPSGSGKSTLLRII 46 (237)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 457899999998544433
No 180
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.50 E-value=11 Score=30.75 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=15.8
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|+||.|||=-|.+-.--.||
T Consensus 40 ~~l~G~nGsGKSTLl~~l~Gl~~p 63 (289)
T PRK13645 40 TCVIGTTGSGKSTMIQLTNGLIIS 63 (289)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 446899999999655444444344
No 181
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=40.38 E-value=11 Score=29.39 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=15.0
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-|.+-.--.+|
T Consensus 38 ~~l~G~nGsGKSTLl~~l~Gl~~~ 61 (233)
T PRK11629 38 MAIVGSSGSGKSTLLHLLGGLDTP 61 (233)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 346899999998544443333343
No 182
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=40.38 E-value=11 Score=29.46 Aligned_cols=17 Identities=47% Similarity=0.677 Sum_probs=12.4
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+-++|.||+|||=-+.+
T Consensus 31 ~~i~G~nGsGKSTLl~~ 47 (242)
T PRK11124 31 LVLLGPSGAGKSSLLRV 47 (242)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45679999999954443
No 183
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.34 E-value=11 Score=30.59 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=17.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||.|||=-+.+-.--.||.
T Consensus 31 ~~l~G~nGsGKSTLl~~i~Gl~~~~ 55 (275)
T PRK13639 31 VALLGPNGAGKSTLFLHFNGILKPT 55 (275)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4578999999996666555444554
No 184
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=40.28 E-value=11 Score=29.43 Aligned_cols=24 Identities=33% Similarity=0.672 Sum_probs=15.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-|.|-.--.+|
T Consensus 32 ~~l~G~nGsGKSTLl~~l~G~~~~ 55 (241)
T PRK10895 32 VGLLGPNGAGKTTTFYMVVGIVPR 55 (241)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 457899999999554443333344
No 185
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=40.22 E-value=11 Score=30.23 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=15.4
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-|.+-.--.||
T Consensus 36 ~~i~G~nGsGKSTLl~~i~G~~~~ 59 (265)
T PRK10253 36 TAIIGPNGCGKSTLLRTLSRLMTP 59 (265)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCC
Confidence 457899999998554443333344
No 186
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=40.19 E-value=13 Score=28.65 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=16.8
Q ss_pred ceeeeeccCCCceeEEEEEEecCCc
Q psy13769 108 DLRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 108 DLRFvGRSGRGKsftltItv~t~Pp 132 (155)
=+-++|.||.|||=-|.+-.-..+|
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~~~ 53 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEMQT 53 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 3567899999998665554333344
No 187
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=40.12 E-value=11 Score=29.70 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=15.4
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-+.+-.--.+|
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~ 52 (252)
T TIGR03005 29 VALIGPSGSGKSTILRILMTLEPI 52 (252)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 446899999999554443333344
No 188
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=40.07 E-value=6.3 Score=36.46 Aligned_cols=16 Identities=50% Similarity=0.818 Sum_probs=13.8
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
.=.+|.||.||||.+.
T Consensus 433 ~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 433 IAVVGGSGAGKSFFMQ 448 (797)
T ss_pred eEEEcCCCCCHHHHHH
Confidence 5689999999999864
No 189
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=40.05 E-value=11 Score=29.88 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=16.3
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-++|.||.|||=-+.|-.-..||
T Consensus 34 ~~l~G~nGsGKSTLl~~i~G~~~~ 57 (257)
T PRK10619 34 ISIIGSSGSGKSTFLRCINFLEKP 57 (257)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 457899999998655554444444
No 190
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=39.96 E-value=12 Score=27.03 Aligned_cols=11 Identities=45% Similarity=0.688 Sum_probs=9.2
Q ss_pred eeeccCCCcee
Q psy13769 111 FVGRSGRGKSF 121 (155)
Q Consensus 111 FvGRSGRGKsf 121 (155)
|+|.+|.|||-
T Consensus 24 i~G~Ng~GKSt 34 (202)
T PF13476_consen 24 IYGPNGSGKST 34 (202)
T ss_dssp EEESTTSSHHH
T ss_pred EECCCCCCHHH
Confidence 57899999973
No 191
>PRK05480 uridine/cytidine kinase; Provisional
Probab=39.90 E-value=11 Score=28.82 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=10.2
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+-..|.||+|||.
T Consensus 9 I~I~G~sGsGKTT 21 (209)
T PRK05480 9 IGIAGGSGSGKTT 21 (209)
T ss_pred EEEECCCCCCHHH
Confidence 4467899999983
No 192
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=39.85 E-value=14 Score=28.26 Aligned_cols=21 Identities=43% Similarity=0.563 Sum_probs=13.5
Q ss_pred hcccccccc--eeeeeccCCCce
Q psy13769 100 KNQVAKFND--LRFVGRSGRGKS 120 (155)
Q Consensus 100 knqvA~FND--LRFvGRSGRGKs 120 (155)
++..-.|+. .=|+|.+|.|||
T Consensus 16 ~~~~~~~~~~~~~i~G~NGsGKS 38 (220)
T PF02463_consen 16 KNAELSFSPGLNVIVGPNGSGKS 38 (220)
T ss_dssp CEEEEETTSSEEEEEESTTSSHH
T ss_pred CeEEEecCCCCEEEEcCCCCCHH
Confidence 333344554 457888888887
No 193
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.84 E-value=11 Score=30.66 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=17.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+-++|.||.|||=-+.+-.--.+|.
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl~~p~ 58 (274)
T PRK13647 34 TALLGPNGAGKSTLLLHLNGIYLPQ 58 (274)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC
Confidence 5678999999997665554444543
No 194
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=39.76 E-value=11 Score=28.55 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=15.6
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||.|||=-+.+-.--.||.
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (198)
T TIGR01189 29 LQVTGPNGIGKTTLLRILAGLLRPD 53 (198)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4578999999985444433333443
No 195
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=39.75 E-value=11 Score=29.69 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=13.7
Q ss_pred eeeeeccCCCceeEEEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSIMV 127 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv 127 (155)
+-.+|.||.|||=-|.+-.
T Consensus 36 ~~i~G~nGsGKSTLl~~l~ 54 (254)
T PRK14273 36 TALIGPSGCGKSTFLRTLN 54 (254)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4578999999996554433
No 196
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.69 E-value=11 Score=30.76 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=17.4
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||+|||=-+.+-.--.+|.
T Consensus 36 ~~i~G~nGsGKSTLl~~L~Gl~~p~ 60 (286)
T PRK13646 36 YAIVGQTGSGKSTLIQNINALLKPT 60 (286)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Confidence 5678999999996665554444543
No 197
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=39.61 E-value=11 Score=29.58 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=13.3
Q ss_pred eeeeeccCCCceeEEEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSIMV 127 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv 127 (155)
+=.+|.||.|||=-+.+-.
T Consensus 33 ~~l~G~nGsGKSTLl~~l~ 51 (253)
T PRK14267 33 FALMGPSGCGKSTLLRTFN 51 (253)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3468999999995554433
No 198
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.51 E-value=11 Score=30.31 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=15.4
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|+||.|||=-|.+-.-..||
T Consensus 38 ~~l~G~nGsGKSTLl~~l~Gl~~p 61 (271)
T PRK13632 38 VAILGHNGSGKSTISKILTGLLKP 61 (271)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 346899999999544443334444
No 199
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=39.48 E-value=12 Score=29.30 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=14.8
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-|.+-.-..+|
T Consensus 30 ~~l~G~nGsGKSTLl~~l~G~~~~ 53 (240)
T PRK09493 30 VVIIGPSGSGKSTLLRCINKLEEI 53 (240)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 346899999998544433333333
No 200
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=39.43 E-value=11 Score=34.39 Aligned_cols=14 Identities=43% Similarity=0.824 Sum_probs=11.8
Q ss_pred cceeeeeccCCCce
Q psy13769 107 NDLRFVGRSGRGKS 120 (155)
Q Consensus 107 NDLRFvGRSGRGKs 120 (155)
.-.-.||+||.|||
T Consensus 492 ~~iaIvG~sGsGKS 505 (694)
T TIGR03375 492 EKVAIIGRIGSGKS 505 (694)
T ss_pred CEEEEECCCCCCHH
Confidence 34668999999998
No 201
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.42 E-value=12 Score=28.79 Aligned_cols=17 Identities=41% Similarity=0.440 Sum_probs=12.5
Q ss_pred ceeeeeccCCCceeEEE
Q psy13769 108 DLRFVGRSGRGKSFTLS 124 (155)
Q Consensus 108 DLRFvGRSGRGKsftlt 124 (155)
=+=.+|.||+|||=-|.
T Consensus 25 ~~~i~G~nGsGKSTLl~ 41 (214)
T cd03297 25 VTGIFGASGAGKSTLLR 41 (214)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 45678999999984433
No 202
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=39.41 E-value=12 Score=30.83 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=16.2
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|+||.|||=-|.+-.---||.
T Consensus 30 ~~l~G~nGsGKSTLl~~laG~~~p~ 54 (272)
T PRK13547 30 TALLGRNGAGKSTLLKALAGDLTGG 54 (272)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCc
Confidence 4478999999995555443333443
No 203
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=39.33 E-value=12 Score=29.43 Aligned_cols=24 Identities=38% Similarity=0.729 Sum_probs=15.4
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-++|+||.|||=-+.+-.--.+|
T Consensus 51 ~~i~G~nGsGKSTLl~~l~G~~~p 74 (224)
T cd03220 51 IGLIGRNGAGKSTLLRLLAGIYPP 74 (224)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 346899999998544444443344
No 204
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=39.32 E-value=12 Score=27.67 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=16.6
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+-++|.||.|||=-+.+-.-..||.
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~~~~~ 53 (144)
T cd03221 29 IGLVGRNGAGKSTLLKLIAGELEPD 53 (144)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC
Confidence 4578999999995554444444543
No 205
>COG0218 Predicted GTPase [General function prediction only]
Probab=39.22 E-value=12 Score=31.44 Aligned_cols=13 Identities=54% Similarity=0.920 Sum_probs=11.4
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
..=|+|||-.|||
T Consensus 26 EIaF~GRSNVGKS 38 (200)
T COG0218 26 EIAFAGRSNVGKS 38 (200)
T ss_pred EEEEEccCcccHH
Confidence 4579999999998
No 206
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=39.17 E-value=16 Score=30.73 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=18.5
Q ss_pred hhhcccccccceeee-eccCCCceeEEE
Q psy13769 98 VVKNQVAKFNDLRFV-GRSGRGKSFTLS 124 (155)
Q Consensus 98 vmknqvA~FNDLRFv-GRSGRGKsftlt 124 (155)
++.+-+.-||=.=|. |-+|+||+||+.
T Consensus 72 lv~~~~~G~n~~i~ayG~tgSGKTyTm~ 99 (319)
T cd01376 72 IVPHLLSGQNATVFAYGSTGAGKTHTML 99 (319)
T ss_pred HHHHHhCCCceEEEEECCCCCCCcEEEe
Confidence 344444555555454 899999999994
No 207
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=39.12 E-value=15 Score=31.03 Aligned_cols=13 Identities=46% Similarity=0.991 Sum_probs=11.3
Q ss_pred eeccCCCceeEEE
Q psy13769 112 VGRSGRGKSFTLS 124 (155)
Q Consensus 112 vGRSGRGKsftlt 124 (155)
.|-+|.||+||+.
T Consensus 88 yG~tgSGKTyTm~ 100 (333)
T cd01371 88 YGQTGTGKTFTME 100 (333)
T ss_pred cCCCCCCCcEeec
Confidence 4899999999984
No 208
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=39.11 E-value=12 Score=29.21 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=15.8
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-++|.||.|||=-|.|-.-..+|
T Consensus 31 ~~l~G~nGsGKSTLl~~l~G~~~p 54 (242)
T TIGR03411 31 RVIIGPNGAGKTTMMDVITGKTRP 54 (242)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 457899999999555444433344
No 209
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=39.10 E-value=10 Score=32.17 Aligned_cols=25 Identities=40% Similarity=0.486 Sum_probs=18.5
Q ss_pred ceeeeeccCCCceeEEEEEEecCCc
Q psy13769 108 DLRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 108 DLRFvGRSGRGKsftltItv~t~Pp 132 (155)
=+=++|.||.|||=-+.+-.-..||
T Consensus 44 ~~~ivG~sGsGKSTL~~~l~Gl~~p 68 (330)
T PRK09473 44 TLGIVGESGSGKSQTAFALMGLLAA 68 (330)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCC
Confidence 3567999999999776665555555
No 210
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=39.01 E-value=14 Score=29.12 Aligned_cols=13 Identities=46% Similarity=1.048 Sum_probs=10.6
Q ss_pred CcEEeecCCCcccc
Q psy13769 43 PTILCSVLPTHWRS 56 (155)
Q Consensus 43 P~~lCs~LP~HWRs 56 (155)
=.|+||. |.||+-
T Consensus 106 Y~f~CSF-PGH~~~ 118 (125)
T TIGR02695 106 YTFFCSF-PGHWAM 118 (125)
T ss_pred ceEEEcC-CCcHHh
Confidence 4589998 999973
No 211
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=38.84 E-value=11 Score=28.57 Aligned_cols=34 Identities=32% Similarity=0.305 Sum_probs=21.8
Q ss_pred CCccchhcchhhhhhhcccccccceeeeeccCCCceeEE
Q psy13769 85 DDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTL 123 (155)
Q Consensus 85 DEn~~aELRN~tavmknqvA~FNDLRFvGRSGRGKsftl 123 (155)
++....+|++... ...-.-+=+.|-+|.||++-+
T Consensus 22 ~~~~~~~l~~~~~-----~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 22 NAELLAALRQLAA-----GKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred cHHHHHHHHHHHh-----cCCCCeEEEECCCCCCHHHHH
Confidence 3445556665532 233456889999999998644
No 212
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=38.79 E-value=12 Score=27.04 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=10.2
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|++|.|||
T Consensus 7 i~vvG~~~vGKS 18 (168)
T cd01866 7 YIIIGDTGVGKS 18 (168)
T ss_pred EEEECCCCCCHH
Confidence 458999999996
No 213
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=38.76 E-value=12 Score=29.98 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=16.2
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-|.+-.-..+|
T Consensus 31 ~~i~G~nGsGKSTLl~~i~G~~~p 54 (258)
T PRK13548 31 VAILGPNGAGKSTLLRALSGELSP 54 (258)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 457899999999655544444444
No 214
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=38.71 E-value=12 Score=29.49 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=13.6
Q ss_pred eeeeeccCCCceeEEEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSIMV 127 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv 127 (155)
+-.+|+||.|||=-+.+-.
T Consensus 33 ~~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14270 33 TALIGPSGCGKSTFLRCLN 51 (251)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4578999999985554433
No 215
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=38.65 E-value=13 Score=29.77 Aligned_cols=10 Identities=50% Similarity=0.969 Sum_probs=9.1
Q ss_pred eeeccCCCce
Q psy13769 111 FVGRSGRGKS 120 (155)
Q Consensus 111 FvGRSGRGKs 120 (155)
++|.+|.|||
T Consensus 27 i~G~NGsGKS 36 (247)
T cd03275 27 IIGPNGSGKS 36 (247)
T ss_pred EECCCCCCHH
Confidence 6899999997
No 216
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=38.64 E-value=12 Score=23.99 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=11.6
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+=++|-+|.||+-.+
T Consensus 5 ~~l~G~~G~GKTtl~ 19 (148)
T smart00382 5 ILIVGPPGSGKTTLA 19 (148)
T ss_pred EEEECCCCCcHHHHH
Confidence 347899999998654
No 217
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=38.63 E-value=12 Score=29.99 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=16.8
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||.|||=-|.|-.-..+|.
T Consensus 40 ~~i~G~nGsGKSTLl~~l~Gl~~p~ 64 (265)
T TIGR02769 40 VGLLGRSGCGKSTLARLLLGLEKPA 64 (265)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4578999999996555444444554
No 218
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=38.57 E-value=12 Score=29.15 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=13.7
Q ss_pred ceeeeeccCCCceeEEEE
Q psy13769 108 DLRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 108 DLRFvGRSGRGKsftltI 125 (155)
=+-++|.||.|||=-+.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~ 46 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSAT 46 (248)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 356899999999955444
No 219
>PRK04998 hypothetical protein; Provisional
Probab=38.54 E-value=21 Score=25.41 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=23.0
Q ss_pred CCccchhcchhhhhhhcccccccceeeeeccCCCceeEEEEEEe-cCCceeee
Q psy13769 85 DDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVG-SSPHQIAS 136 (155)
Q Consensus 85 DEn~~aELRN~tavmknqvA~FNDLRFvGRSGRGKsftltItv~-t~Ppqvat 136 (155)
+++.-++++ +++.++.-.+..+. +--|--||--.+|++|. ++..|+-.
T Consensus 25 ~~~~~~~v~---~v~~~~~~~~~~~~-~r~S~~GkY~Svtv~v~v~s~eq~~~ 73 (88)
T PRK04998 25 RPELVDQVV---EVVQRHAPGDYTPT-VKPSSKGNYHSVSITITATSIEQVET 73 (88)
T ss_pred cHhHHHHHH---HHHHHhCCCCCCce-EccCCCCEEEEEEEEEEECCHHHHHH
Confidence 355555555 45555543332222 23456666555555554 44445433
No 220
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=38.41 E-value=12 Score=28.90 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=15.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+-++|.||.|||=-+.+-.--.+|.
T Consensus 40 ~~i~G~nGsGKSTLl~~i~G~~~~~ 64 (214)
T PRK13543 40 LLVQGDNGAGKTTLLRVLAGLLHVE 64 (214)
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 4478999999985444433333443
No 221
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=38.40 E-value=11 Score=26.58 Aligned_cols=13 Identities=38% Similarity=0.450 Sum_probs=10.6
Q ss_pred eeeccCCCceeEE
Q psy13769 111 FVGRSGRGKSFTL 123 (155)
Q Consensus 111 FvGRSGRGKsftl 123 (155)
+.|.+|.|||.-.
T Consensus 3 i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 3 IYGPPGIGKSTLA 15 (107)
T ss_pred EECCCCCCHHHHH
Confidence 6799999998643
No 222
>PRK08727 hypothetical protein; Validated
Probab=38.32 E-value=16 Score=29.30 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.6
Q ss_pred cccceeeeeccCCCceeEE
Q psy13769 105 KFNDLRFVGRSGRGKSFTL 123 (155)
Q Consensus 105 ~FNDLRFvGRSGRGKsftl 123 (155)
.+|-+=+.|-||.||+.-+
T Consensus 40 ~~~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4677999999999999543
No 223
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=38.29 E-value=12 Score=29.36 Aligned_cols=16 Identities=44% Similarity=0.567 Sum_probs=12.3
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+-++|.||.|||=-|.
T Consensus 34 ~~l~G~nGsGKSTLl~ 49 (252)
T PRK14255 34 TALIGPSGCGKSTYLR 49 (252)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5678999999994433
No 224
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=38.28 E-value=12 Score=29.31 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=13.8
Q ss_pred eeeeeccCCCceeEEEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSIMV 127 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv 127 (155)
+-++|.||.|||=-+.+-.
T Consensus 32 ~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14262 32 TAIIGPSGCGKTTLLRSIN 50 (250)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4468999999996555433
No 225
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=38.27 E-value=13 Score=27.21 Aligned_cols=14 Identities=36% Similarity=0.582 Sum_probs=11.0
Q ss_pred eeeeeccCCCceeE
Q psy13769 109 LRFVGRSGRGKSFT 122 (155)
Q Consensus 109 LRFvGRSGRGKsft 122 (155)
+=++|-+|+|||-.
T Consensus 6 i~i~G~~GsGKsTl 19 (188)
T TIGR01360 6 IFIVGGPGSGKGTQ 19 (188)
T ss_pred EEEECCCCCCHHHH
Confidence 34789999999864
No 226
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=38.26 E-value=12 Score=31.76 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=15.8
Q ss_pred eeeeeccCCCceeEEEEEEecC
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSS 130 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~ 130 (155)
+=+||.||.|||=.+.+-.-.-
T Consensus 36 ~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 36 VGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred EEEECCCCChHHHHHHHHHcCC
Confidence 5679999999997655544433
No 227
>PLN03073 ABC transporter F family; Provisional
Probab=38.22 E-value=12 Score=35.55 Aligned_cols=18 Identities=44% Similarity=0.691 Sum_probs=13.3
Q ss_pred eeeeeccCCCceeEEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSIM 126 (155)
Q Consensus 109 LRFvGRSGRGKsftltIt 126 (155)
.=+||+||.|||=-|.+-
T Consensus 206 ~gLvG~NGsGKSTLLr~l 223 (718)
T PLN03073 206 YGLVGRNGTGKTTFLRYM 223 (718)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 446899999999655443
No 228
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=38.21 E-value=12 Score=33.15 Aligned_cols=17 Identities=41% Similarity=0.602 Sum_probs=13.4
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=|+|-||+|||=+|.|
T Consensus 32 ~vllGPSGcGKSTlLr~ 48 (338)
T COG3839 32 VVLLGPSGCGKSTLLRM 48 (338)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45789999999976643
No 229
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=38.13 E-value=13 Score=29.19 Aligned_cols=13 Identities=46% Similarity=0.629 Sum_probs=10.9
Q ss_pred eeeeccCCCceeE
Q psy13769 110 RFVGRSGRGKSFT 122 (155)
Q Consensus 110 RFvGRSGRGKsft 122 (155)
=|+|++|.|||--
T Consensus 25 ~i~G~NGsGKStl 37 (198)
T cd03276 25 FIVGNNGSGKSAI 37 (198)
T ss_pred EEECCCCCcHHHH
Confidence 4899999999843
No 230
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=38.09 E-value=13 Score=29.29 Aligned_cols=17 Identities=41% Similarity=0.616 Sum_probs=12.6
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=.+|.||.|||=-|.+
T Consensus 32 ~~i~G~nGsGKSTLl~~ 48 (250)
T PRK14247 32 TALMGPSGSGKSTLLRV 48 (250)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44789999999854443
No 231
>PRK09087 hypothetical protein; Validated
Probab=38.08 E-value=19 Score=29.09 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=14.9
Q ss_pred ccc-eeeeeccCCCceeEEE
Q psy13769 106 FND-LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 106 FND-LRFvGRSGRGKsftlt 124 (155)
-|. +=+.|.||.|||--+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 355 8899999999986544
No 232
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=38.07 E-value=17 Score=30.85 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=16.3
Q ss_pred ccccccceeee-eccCCCceeEEE
Q psy13769 102 QVAKFNDLRFV-GRSGRGKSFTLS 124 (155)
Q Consensus 102 qvA~FNDLRFv-GRSGRGKsftlt 124 (155)
-+.=||-.=|. |-+|.||+|||.
T Consensus 77 ~~~G~n~~i~ayG~tgSGKTyTl~ 100 (352)
T cd01364 77 VLMGYNCTIFAYGQTGTGKTYTME 100 (352)
T ss_pred HhCCCeEEEEECCCCCCCCcEEec
Confidence 33445555454 899999999983
No 233
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=38.06 E-value=13 Score=29.29 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=15.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-+.+-.--.||
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (255)
T PRK11300 34 VSLIGPNGAGKTTVFNCLTGFYKP 57 (255)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC
Confidence 346899999999655444444344
No 234
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=38.03 E-value=11 Score=29.51 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=15.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||+|||=-+.+-.--.+|
T Consensus 28 ~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 28 IGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred EEEECCCCChHHHHHHHHHcCCCC
Confidence 557899999998555443333344
No 235
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=38.02 E-value=13 Score=29.18 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=15.1
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-+.+-.--.+|
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G~~~~ 55 (250)
T PRK11264 32 VAIIGPSGSGKTTLLRCINLLEQP 55 (250)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 447899999999544433333344
No 236
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=37.91 E-value=13 Score=29.32 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=16.2
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+-.+|.||.|||=-|.+-.-..||+
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G~~~~~ 56 (253)
T TIGR02323 32 LGIVGESGSGKSTLLGCLAGRLAPD 56 (253)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3568999999996555444444443
No 237
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=37.84 E-value=13 Score=25.89 Aligned_cols=11 Identities=45% Similarity=0.736 Sum_probs=9.5
Q ss_pred eeeccCCCcee
Q psy13769 111 FVGRSGRGKSF 121 (155)
Q Consensus 111 FvGRSGRGKsf 121 (155)
++|-+|.|||.
T Consensus 4 ~~G~pgsGKSt 14 (143)
T PF13671_consen 4 LCGPPGSGKST 14 (143)
T ss_dssp EEESTTSSHHH
T ss_pred EECCCCCCHHH
Confidence 68999999985
No 238
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=37.79 E-value=13 Score=30.02 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=16.8
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=.+|.||.|||=-|.+-.--.||.
T Consensus 36 ~~i~G~nGsGKSTLl~~l~Gl~~p~ 60 (269)
T PRK11831 36 TAIMGPSGIGKTTLLRLIGGQIAPD 60 (269)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4468999999996555544444543
No 239
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=37.60 E-value=13 Score=33.28 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=12.3
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=++|+||+|||=-|.|
T Consensus 34 ~~liG~NGsGKSTLl~~ 50 (552)
T TIGR03719 34 IGVLGLNGAGKSTLLRI 50 (552)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44789999999844433
No 240
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=37.56 E-value=13 Score=26.78 Aligned_cols=12 Identities=42% Similarity=0.659 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 7 i~ivG~~~vGKT 18 (180)
T cd04127 7 FLALGDSGVGKT 18 (180)
T ss_pred EEEECCCCCCHH
Confidence 458999999997
No 241
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=37.36 E-value=11 Score=25.52 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=10.5
Q ss_pred eeeccCCCceeEE
Q psy13769 111 FVGRSGRGKSFTL 123 (155)
Q Consensus 111 FvGRSGRGKsftl 123 (155)
+.|.+|.||++.+
T Consensus 3 l~G~~G~GKT~l~ 15 (132)
T PF00004_consen 3 LHGPPGTGKTTLA 15 (132)
T ss_dssp EESSTTSSHHHHH
T ss_pred EECcCCCCeeHHH
Confidence 6899999998643
No 242
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=37.22 E-value=13 Score=28.34 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=15.5
Q ss_pred eeeeccCCCceeEEEEEEecCCc
Q psy13769 110 RFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 110 RFvGRSGRGKsftltItv~t~Pp 132 (155)
=++|.||.|||=-+.+-.--.+|
T Consensus 31 ~l~G~nGsGKSTLl~~i~G~~~~ 53 (200)
T PRK13540 31 HLKGSNGAGKTTLLKLIAGLLNP 53 (200)
T ss_pred EEECCCCCCHHHHHHHHhcCCCC
Confidence 46899999998655544444444
No 243
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=37.19 E-value=13 Score=30.24 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=16.3
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||.|||=-|.|-.--.+|.
T Consensus 41 ~~I~G~NGsGKSTLlk~l~Gl~~p~ 65 (257)
T PRK11247 41 VAVVGRSGCGKSTLLRLLAGLETPS 65 (257)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4578999999995554444444443
No 244
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=37.15 E-value=13 Score=28.62 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=16.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||.|||=-+.|----.||.
T Consensus 43 ~~i~G~nGsGKSTLl~~l~Gl~~~~ 67 (226)
T cd03248 43 TALVGPSGSGKSTVVALLENFYQPQ 67 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcCcCCC
Confidence 4568999999986555444444554
No 245
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=37.04 E-value=13 Score=30.61 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=16.0
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=.|.+-.-..+|
T Consensus 33 ~~l~G~NGaGKSTLl~~l~Gl~~p 56 (303)
T TIGR01288 33 FGLLGPNGAGKSTIARMLLGMISP 56 (303)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 557899999999555444333344
No 246
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=37.01 E-value=12 Score=27.67 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=14.3
Q ss_pred hhhcccccccceeeeeccCCCcee
Q psy13769 98 VVKNQVAKFNDLRFVGRSGRGKSF 121 (155)
Q Consensus 98 vmknqvA~FNDLRFvGRSGRGKsf 121 (155)
++++.+.+=.=.=|.|.+|.|||+
T Consensus 24 li~g~~~~g~l~~i~g~~g~GKT~ 47 (193)
T PF13481_consen 24 LIDGLLPRGELTLIAGPPGSGKTT 47 (193)
T ss_dssp EETTEE-TTSEEEEEECSTSSHHH
T ss_pred eECCcccCCeEEEEEeCCCCCHHH
Confidence 334433333234578899999985
No 247
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.96 E-value=13 Score=29.91 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=16.0
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=.+|.||.|||=-|.+-.-..+|.
T Consensus 36 ~~l~G~nGsGKSTLl~~i~Gl~~p~ 60 (280)
T PRK13649 36 TAFIGHTGSGKSTIMQLLNGLHVPT 60 (280)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3468999999995554443343443
No 248
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.93 E-value=13 Score=30.51 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=17.4
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||.|||=-+.+-.-.-+|.
T Consensus 36 ~~i~G~nGaGKSTLl~~l~Gl~~p~ 60 (287)
T PRK13637 36 VGLIGHTGSGKSTLIQHLNGLLKPT 60 (287)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC
Confidence 4468999999997665555454554
No 249
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.92 E-value=13 Score=29.66 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=12.4
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=++|.||.|||=-+.+
T Consensus 45 ~~i~G~nGsGKSTLl~~ 61 (265)
T PRK14252 45 TALIGPSGCGKSTFLRC 61 (265)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44689999999954433
No 250
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=36.91 E-value=13 Score=29.17 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=15.9
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-|.+-.--.+|
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~~p 53 (247)
T TIGR00972 30 TALIGPSGCGKSTLLRSLNRMNDL 53 (247)
T ss_pred EEEECCCCCCHHHHHHHHhccCCC
Confidence 446899999998665554433343
No 251
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.89 E-value=13 Score=30.32 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=15.6
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-++|+||.|||=-+.+-.---||
T Consensus 35 ~~i~G~nGaGKSTLl~~i~Gl~~p 58 (283)
T PRK13636 35 TAILGGNGAGKSTLFQNLNGILKP 58 (283)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 457899999999544443333344
No 252
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=36.79 E-value=13 Score=29.52 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=15.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-+.+-.-..+|
T Consensus 33 ~~i~G~nGsGKSTLl~~i~G~~~p 56 (262)
T PRK09984 33 VALLGPSGSGKSTLLRHLSGLITG 56 (262)
T ss_pred EEEECCCCCCHHHHHHHHhccCCC
Confidence 456899999999554444333343
No 253
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=36.78 E-value=13 Score=30.15 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=16.0
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-|.+-.-..+|
T Consensus 39 ~~l~G~nGsGKSTLl~~l~Gl~~~ 62 (280)
T PRK13633 39 LVILGRNGSGKSTIAKHMNALLIP 62 (280)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 447899999999555444444444
No 254
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=36.60 E-value=14 Score=29.80 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=15.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-|.+-.--.+|
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl~~p 53 (255)
T PRK11248 30 LVVLGPSGCGKTTLLNLIAGFVPY 53 (255)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 446899999999554443333344
No 255
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.42 E-value=14 Score=29.20 Aligned_cols=15 Identities=47% Similarity=0.629 Sum_probs=11.7
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+-++|.||.|||=-|
T Consensus 33 ~~i~G~nGsGKSTLl 47 (252)
T PRK14256 33 TAIIGPSGCGKSTVL 47 (252)
T ss_pred EEEECCCCCCHHHHH
Confidence 557899999998433
No 256
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=36.39 E-value=14 Score=28.84 Aligned_cols=25 Identities=32% Similarity=0.310 Sum_probs=16.4
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+-++|.||.|||=-|.|-.--.||+
T Consensus 36 ~~i~G~nGsGKSTLl~~l~G~~~~~ 60 (225)
T PRK10247 36 KLITGPSGCGKSTLLKIVASLISPT 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCC
Confidence 4568999999996555444444443
No 257
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=36.33 E-value=14 Score=28.93 Aligned_cols=13 Identities=38% Similarity=0.731 Sum_probs=10.4
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+-.+|.||.|||=
T Consensus 9 ~~l~G~nGsGKST 21 (223)
T TIGR03771 9 LGLLGPNGAGKTT 21 (223)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999983
No 258
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.28 E-value=14 Score=29.03 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=15.9
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|+||.|||=-+.|----.+|+
T Consensus 28 ~~i~G~nG~GKStLl~~l~G~~~p~ 52 (235)
T cd03299 28 FVILGPTGSGKSVLLETIAGFIKPD 52 (235)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCCC
Confidence 4478999999986554433333443
No 259
>PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the small subunit of carbamoyl phosphate synthase. The small subunit has a 3-layer beta/beta/alpha structure, and is thought to be mobile in most proteins that carry it. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity.; GO: 0006807 nitrogen compound metabolic process; PDB: 1CE8_B 1KEE_B 1CS0_D 1T36_D 1M6V_H 1A9X_F 1JDB_I 1BXR_F 1C3O_B 1C30_F ....
Probab=36.27 E-value=8.7 Score=30.28 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=12.9
Q ss_pred cCCCccccCCCCCcce---EEEEeecC
Q psy13769 49 VLPTHWRSNKSLPIAF---KVVVLDDV 72 (155)
Q Consensus 49 ~LP~HWRsNKtLP~~F---kVvaL~~V 72 (155)
..|+||||..+|..-. +|.++..|
T Consensus 85 ~~~s~~~~~~sL~~~L~~~~ipgi~gv 111 (131)
T PF00988_consen 85 DIPSHWRSEMSLDEWLKEHGIPGISGV 111 (131)
T ss_dssp SS---TT-SB-HHHHHHHTT-EEEESS
T ss_pred CCCccccccCCHHHHHHHCCCeeeeCC
Confidence 3499999999998765 57777654
No 260
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.24 E-value=14 Score=29.44 Aligned_cols=20 Identities=30% Similarity=0.404 Sum_probs=14.1
Q ss_pred eeeeeccCCCceeEEEEEEe
Q psy13769 109 LRFVGRSGRGKSFTLSIMVG 128 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~ 128 (155)
+=++|.||.|||=-|.+-.-
T Consensus 41 ~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 41 TALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 44789999999965554433
No 261
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=36.11 E-value=44 Score=27.11 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=27.4
Q ss_pred CCCCcceE----EEEeecCCCCeE--EEEeecCCCccc
Q psy13769 58 KSLPIAFK----VVVLDDVMDGTI--VTIRAGNDDNYC 89 (155)
Q Consensus 58 KtLP~~Fk----VvaL~~VpDGT~--Vtv~AGNDEn~~ 89 (155)
--||..|| ||+-|..-||+- =+|.|.-||||-
T Consensus 91 GilPDlFrEGqgVVaeG~~~~g~F~A~~vLAKHde~Ym 128 (155)
T PRK13159 91 GILPDLFRDNQSVIANGRMQGGRFVANEVLAKHDETYM 128 (155)
T ss_pred cCCCccccCCCeEEEEEEEcCCEEEEeEEEecCCCcCC
Confidence 36888897 999998888984 489999999997
No 262
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=36.08 E-value=15 Score=27.26 Aligned_cols=13 Identities=54% Similarity=0.920 Sum_probs=11.1
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
.+=++|++|.|||
T Consensus 20 ~i~ivG~~~~GKS 32 (179)
T TIGR03598 20 EIAFAGRSNVGKS 32 (179)
T ss_pred EEEEEcCCCCCHH
Confidence 4568999999997
No 263
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=36.07 E-value=14 Score=27.70 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=15.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-++|.||.|||=-+.+-.--.+|
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~~~ 53 (166)
T cd03223 30 LLITGPSGTGKSSLFRALAGLWPW 53 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 467899999998554443333344
No 264
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=36.03 E-value=14 Score=28.16 Aligned_cols=15 Identities=40% Similarity=0.600 Sum_probs=12.0
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+=++|.+|.|||=-+
T Consensus 12 v~liG~~g~GKTtLi 26 (215)
T PTZ00132 12 LILVGDGGVGKTTFV 26 (215)
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999998444
No 265
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=36.00 E-value=13 Score=32.65 Aligned_cols=10 Identities=80% Similarity=1.242 Sum_probs=9.2
Q ss_pred eeeccCCCce
Q psy13769 111 FVGRSGRGKS 120 (155)
Q Consensus 111 FvGRSGRGKs 120 (155)
.+|+||.|||
T Consensus 363 IvG~sGsGKS 372 (571)
T TIGR02203 363 LVGRSGSGKS 372 (571)
T ss_pred EECCCCCCHH
Confidence 5899999998
No 266
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=35.88 E-value=14 Score=29.09 Aligned_cols=15 Identities=53% Similarity=0.727 Sum_probs=11.5
Q ss_pred eeeccCCCceeEEEE
Q psy13769 111 FVGRSGRGKSFTLSI 125 (155)
Q Consensus 111 FvGRSGRGKsftltI 125 (155)
.+|.||.|||=-+.+
T Consensus 36 I~G~nGsGKSTLl~~ 50 (251)
T PRK14244 36 FIGPSGCGKSTFLRC 50 (251)
T ss_pred EECCCCCCHHHHHHH
Confidence 689999999854443
No 267
>PF01871 AMMECR1: AMMECR1; InterPro: IPR002733 The contiguous gene deletion syndrome is characterised by Alport syndrome (A), mental retardation (M), midface hypoplasia (M), and elliptocytosis (E), as well as generalized hypoplasia and cardiac abnormalities. It is caused by a deletion in Xq22.3, comprising several genes including AMME chromosomal region gene 1 (AMMECR1), which encodes a protein with a nuclear location and presently unknown function. The C-terminal region of AMMECR1 (from residue 122 to 333) is well conserved, and homologues appear in species ranging from bacteria and archaea to eukaryotes. The high level of conservation of the AMMECR1 domain points to a basic cellular function, potentially in either the transcription, replication, repair or translation machinery [, ]. The AMMECR1 domain contains a 6-amino-acid motif (LRGCIG) that might be functionally important since it is strikingly conserved throughout evolution []. The AMMECR1 domain consists of two distinct subdomains of different sizes. The large subdomain, which contains both the N- and C-terminal regions, consists of five alpha-helices and five beta-strands. These five beta-strands form an antiparallel beta-sheet. The small subdomain consists of four alpha-helices and three beta-strands, and these beta-strands also form an antiparallel beta-sheet. The conserved 'LRGCIG' motif is located at beta(2) and its N-terminal loop, and most of the side chains of these residues point toward the interface of the two subdomains. The two subdomains are connected by only two loops, and the interaction between the two subdomains is not strong. Thus, these subdomains may move dynamically when the substrate enters the cleft. The size of the cleft suggests that the substrate is large, e.g., the substrate may be a nucleic acid or protein. However, the inner side of the cleft is not filled with positively charged residues, and therefore it is unlikely that negatively charged nucleic acids such as DNA or RNA interact at this site []. ; PDB: 1WSC_B 1VAJ_A 1ZQ7_D.
Probab=35.88 E-value=8.5 Score=30.69 Aligned_cols=68 Identities=29% Similarity=0.446 Sum_probs=35.6
Q ss_pred CCCeEEEEeecCCCccchhcchhh-----------hhhhc-ccccccceeeeecc-CCCceeEEEEEEecCCceeeeeee
Q psy13769 73 MDGTIVTIRAGNDDNYCGELRNCT-----------AVVKN-QVAKFNDLRFVGRS-GRGKSFTLSIMVGSSPHQIASYNK 139 (155)
Q Consensus 73 pDGT~Vtv~AGNDEn~~aELRN~t-----------avmkn-qvA~FNDLRFvGRS-GRGKsftltItv~t~Ppqvaty~~ 139 (155)
+-|+-||+.- -.|||.|. ++.+| ..|-|+|=||--=+ --=+..+++|+|.+.|-.+..+ +
T Consensus 32 ~~g~FVTl~~------~g~LRGCIGt~~p~~~L~~~v~~~A~~AA~~DpRF~Pl~~~El~~l~ieVSvL~~~~~i~~~-~ 104 (171)
T PF01871_consen 32 PRGVFVTLKK------DGELRGCIGTFEPVRPLAEDVIENAIAAAFEDPRFPPLTPSELPELSIEVSVLSPPEPISDP-E 104 (171)
T ss_dssp BEEEEEEEEE------CCCEEEEEEESSSESBHHHHHHHHHHHHHHT-TTS----GGGGGGEEEEEEEE---EE--GG-G
T ss_pred ceeEEEEEEE------CCEEEEEeccCCcchhHHHHHHHHHHHHhhCCCCCCCCCHHHHcccEEEEEeccCcEEcCCH-H
Confidence 6788888887 34566553 34444 45679999997421 1225678888888888666633 5
Q ss_pred eeEEeeeC
Q psy13769 140 AIKVTVDG 147 (155)
Q Consensus 140 AIKVTVDG 147 (155)
.+.+-+||
T Consensus 105 ~~~~g~~G 112 (171)
T PF01871_consen 105 DWEPGRHG 112 (171)
T ss_dssp G--TTT-E
T ss_pred HcccCcce
Confidence 55555554
No 268
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=35.88 E-value=15 Score=30.83 Aligned_cols=11 Identities=55% Similarity=0.682 Sum_probs=9.2
Q ss_pred eeeccCCCcee
Q psy13769 111 FVGRSGRGKSF 121 (155)
Q Consensus 111 FvGRSGRGKsf 121 (155)
+.|-||+|||=
T Consensus 26 vtGvSGsGKSt 36 (261)
T cd03271 26 VTGVSGSGKSS 36 (261)
T ss_pred EECCCCCchHH
Confidence 46899999983
No 269
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=35.82 E-value=14 Score=34.32 Aligned_cols=14 Identities=50% Similarity=0.662 Sum_probs=11.4
Q ss_pred ceeeeeccCCCcee
Q psy13769 108 DLRFVGRSGRGKSF 121 (155)
Q Consensus 108 DLRFvGRSGRGKsf 121 (155)
=.=.||+||.|||=
T Consensus 509 ~vaIvG~SGsGKST 522 (711)
T TIGR00958 509 VVALVGPSGSGKST 522 (711)
T ss_pred EEEEECCCCCCHHH
Confidence 45579999999983
No 270
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=35.75 E-value=20 Score=30.61 Aligned_cols=27 Identities=30% Similarity=0.609 Sum_probs=17.6
Q ss_pred hhhcccccccceee-eeccCCCceeEEE
Q psy13769 98 VVKNQVAKFNDLRF-VGRSGRGKSFTLS 124 (155)
Q Consensus 98 vmknqvA~FNDLRF-vGRSGRGKsftlt 124 (155)
++++-+.=||=.=| .|-+|.||+|||.
T Consensus 80 ~v~~~l~G~n~~i~ayGqtGSGKT~Tm~ 107 (356)
T cd01365 80 LLDHAFEGYNVCLFAYGQTGSGKSYTMM 107 (356)
T ss_pred HHHHHhCCCceEEEEecCCCCCCeEEec
Confidence 34444444554433 4899999999984
No 271
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=35.75 E-value=14 Score=28.47 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=11.6
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+=.+|.||.|||=-+.
T Consensus 34 ~~I~G~nGsGKStLl~ 49 (220)
T TIGR02982 34 VILTGPSGSGKTTLLT 49 (220)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3467999999984333
No 272
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.72 E-value=14 Score=28.46 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=15.8
Q ss_pred eeeeeccCCCceeEEEEEEecCC
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSP 131 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~P 131 (155)
+=.+|.||.|||=-|.+-.-..+
T Consensus 36 ~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 36 VLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EEEECCCCCCHHHHHHHhcccCC
Confidence 44689999999966655444444
No 273
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=35.69 E-value=14 Score=29.75 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=12.5
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+-.+|.||.|||=-+.+
T Consensus 33 ~~I~G~NGsGKSTLl~~ 49 (251)
T PRK09544 33 LTLLGPNGAGKSTLVRV 49 (251)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45689999999854443
No 274
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=35.66 E-value=15 Score=28.20 Aligned_cols=16 Identities=50% Similarity=0.659 Sum_probs=11.6
Q ss_pred eeeeccCCCceeEEEE
Q psy13769 110 RFVGRSGRGKSFTLSI 125 (155)
Q Consensus 110 RFvGRSGRGKsftltI 125 (155)
=.+|.||.|||=-+.|
T Consensus 34 ~i~G~nGsGKSTLl~~ 49 (221)
T cd03244 34 GIVGRTGSGKSSLLLA 49 (221)
T ss_pred EEECCCCCCHHHHHHH
Confidence 3579999999854443
No 275
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.60 E-value=15 Score=28.87 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=15.9
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=.+|.||.|||=-|.+-.--.||.
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~~~~ 54 (242)
T cd03295 30 LVLIGPSGSGKTTTMKMINRLIEPT 54 (242)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3468999999995554444344443
No 276
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=35.58 E-value=14 Score=30.90 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=16.2
Q ss_pred eeeeccCCCceeEEEEEEecCCc
Q psy13769 110 RFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 110 RFvGRSGRGKsftltItv~t~Pp 132 (155)
=|+|++|+|||=.|.+-..-..|
T Consensus 35 gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 35 GLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred EEECCCCCCHHHHHHHHhCCcCC
Confidence 47899999999766655544444
No 277
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=35.48 E-value=15 Score=29.94 Aligned_cols=19 Identities=42% Similarity=0.618 Sum_probs=14.2
Q ss_pred eeeeeccCCCceeEEEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSIMV 127 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv 127 (155)
+-.+|.||.|||=-|.+-.
T Consensus 49 ~~IiG~nGsGKSTLl~~l~ 67 (274)
T PRK14265 49 IAFIGPSGCGKSTLLRCFN 67 (274)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5679999999986555433
No 278
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=35.24 E-value=14 Score=35.06 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=18.7
Q ss_pred cceeeeeccCCCceeEEEEEEecCCc
Q psy13769 107 NDLRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 107 NDLRFvGRSGRGKsftltItv~t~Pp 132 (155)
.=|=.||.||+|||-+...-+-.-|+
T Consensus 36 E~lgIvGESGsGKSt~a~~i~gll~~ 61 (539)
T COG1123 36 EILGIVGESGSGKSTLALALMGLLPE 61 (539)
T ss_pred cEEEEEcCCCCCHHHHHHHHhccCCC
Confidence 34678999999999776555555444
No 279
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=35.24 E-value=15 Score=31.84 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=16.9
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-++|.||.|||=-|.+-.-..+|
T Consensus 34 ~gIiG~sGaGKSTLlr~I~gl~~p 57 (343)
T TIGR02314 34 YGVIGASGAGKSTLIRCVNLLERP 57 (343)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 557999999998665554444444
No 280
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=35.12 E-value=18 Score=30.25 Aligned_cols=27 Identities=37% Similarity=0.712 Sum_probs=18.0
Q ss_pred hhhcccccccceee-eeccCCCceeEEE
Q psy13769 98 VVKNQVAKFNDLRF-VGRSGRGKSFTLS 124 (155)
Q Consensus 98 vmknqvA~FNDLRF-vGRSGRGKsftlt 124 (155)
++.+-++-||=.=| .|-+|.||+||+.
T Consensus 65 ~v~~~l~G~n~~i~ayG~tgSGKT~T~~ 92 (321)
T cd01374 65 VVRSALEGYNGTIFAYGQTSSGKTFTMS 92 (321)
T ss_pred HHHHHHCCCceeEEeecCCCCCCceecc
Confidence 34444555654433 3899999999984
No 281
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=35.10 E-value=15 Score=29.70 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=11.7
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+-.+|.||.|||=-|.
T Consensus 36 ~~l~G~nGsGKSTLl~ 51 (272)
T PRK15056 36 AALVGVNGSGKSTLFK 51 (272)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3468999999984433
No 282
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.97 E-value=15 Score=29.96 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=16.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=.+|.||.|||=-+.+-.---+|.
T Consensus 36 ~~i~G~nGsGKSTLl~~l~Gl~~p~ 60 (279)
T PRK13650 36 LSIIGHNGSGKSTTVRLIDGLLEAE 60 (279)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4568999999986655544444444
No 283
>PF01796 DUF35: DUF35 OB-fold domain; InterPro: IPR002878 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is approximately 70 amino acids long. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain and a C-terminal OB fold domain represented in this entry. OB-folds are frequently found to bind nucleic acids suggesting this domain might bind to DNA or RNA.
Probab=34.96 E-value=57 Score=21.64 Aligned_cols=34 Identities=35% Similarity=0.673 Sum_probs=22.1
Q ss_pred cCCCceeEEEEEEecCCceee--eeeeeeEEeee-CCC
Q psy13769 115 SGRGKSFTLSIMVGSSPHQIA--SYNKAIKVTVD-GPR 149 (155)
Q Consensus 115 SGRGKsftltItv~t~Ppqva--ty~~AIKVTVD-GPR 149 (155)
||+|+-++-|+.-...++... -|.=|| |..| |+|
T Consensus 5 ~g~Gtv~s~T~v~~~~~~~~~~~Py~v~~-V~ldeg~r 41 (68)
T PF01796_consen 5 SGRGTVYSFTVVHRPPPPGFPEVPYVVAI-VELDEGVR 41 (68)
T ss_pred CCCEEEEEEEEEecCCCCcccCCCEEEEE-EEeCCCCE
Confidence 799999999987776555443 444443 3335 665
No 284
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.96 E-value=15 Score=28.78 Aligned_cols=20 Identities=30% Similarity=0.384 Sum_probs=14.1
Q ss_pred eeeeeccCCCceeEEEEEEe
Q psy13769 109 LRFVGRSGRGKSFTLSIMVG 128 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~ 128 (155)
+=.+|.||.|||=-|.+-.-
T Consensus 33 ~~i~G~nGsGKSTLl~~i~G 52 (252)
T PRK14272 33 NALIGPSGCGKTTFLRAINR 52 (252)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 34789999999965554333
No 285
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=34.95 E-value=15 Score=31.30 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=16.1
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-|.+-.-..+|
T Consensus 34 ~~iiG~nGsGKSTLlk~L~Gl~~p 57 (343)
T PRK11153 34 FGVIGASGAGKSTLIRCINLLERP 57 (343)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Confidence 446899999999655544444444
No 286
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=34.92 E-value=15 Score=31.35 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=17.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||+|||=-+.+-.-..+|
T Consensus 50 ~~lvG~sGsGKSTLlk~i~Gl~~p 73 (331)
T PRK15079 50 LGVVGESGCGKSTFARAIIGLVKA 73 (331)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Confidence 557999999999766655554455
No 287
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=34.84 E-value=15 Score=28.32 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=15.8
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=.+|.||.|||=-|.+-.---||+
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (223)
T TIGR03740 29 YGLLGPNGAGKSTLLKMITGILRPT 53 (223)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3468999999985554433333443
No 288
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=34.80 E-value=15 Score=29.56 Aligned_cols=19 Identities=42% Similarity=0.551 Sum_probs=13.7
Q ss_pred eeeeeccCCCceeEEEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSIMV 127 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv 127 (155)
+=.+|.||.|||=-|.+-.
T Consensus 48 ~~i~G~nGsGKSTLl~~l~ 66 (267)
T PRK14235 48 TAFIGPSGCGKSTFLRCLN 66 (267)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4468999999996555433
No 289
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=34.72 E-value=21 Score=29.85 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=16.5
Q ss_pred hhcccccccceee-eeccCCCceeEEE
Q psy13769 99 VKNQVAKFNDLRF-VGRSGRGKSFTLS 124 (155)
Q Consensus 99 mknqvA~FNDLRF-vGRSGRGKsftlt 124 (155)
+..-+.=+|-.=| .|-+|.||+||+.
T Consensus 69 v~~~~~G~n~~i~ayG~tgSGKT~Tm~ 95 (325)
T cd01369 69 VDDVLNGYNGTIFAYGQTGSGKTYTME 95 (325)
T ss_pred HHHHHcCccceEEEeCCCCCCceEEec
Confidence 3333444554333 3799999999974
No 290
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=34.66 E-value=15 Score=27.89 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=14.2
Q ss_pred eeeeccCCCceeEEEEEEecCCc
Q psy13769 110 RFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 110 RFvGRSGRGKsftltItv~t~Pp 132 (155)
=.+|.||.|||=-|.+-.-..||
T Consensus 30 ~i~G~nGsGKSTLl~~l~Gl~~~ 52 (208)
T cd03268 30 GFLGPNGAGKTTTMKIILGLIKP 52 (208)
T ss_pred EEECCCCCCHHHHHHHHhCCcCC
Confidence 35799999998544433333343
No 291
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=34.62 E-value=15 Score=32.57 Aligned_cols=24 Identities=42% Similarity=0.562 Sum_probs=15.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|+||+|||=-|.+-.-.-||
T Consensus 38 ~~iiG~nGsGKSTLl~~i~G~~~~ 61 (529)
T PRK15134 38 LALVGESGSGKSVTALSILRLLPS 61 (529)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 457899999998544443333343
No 292
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.58 E-value=15 Score=29.65 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=12.7
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=++|.||.|||=-|.+
T Consensus 42 ~~l~G~nGsGKSTLl~~ 58 (269)
T PRK14259 42 TALIGPSGCGKSTVLRS 58 (269)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44789999999954444
No 293
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=34.58 E-value=15 Score=34.18 Aligned_cols=17 Identities=53% Similarity=0.823 Sum_probs=12.8
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
.=.|||+|+|||=-|.|
T Consensus 32 iGLvG~NGaGKSTLLki 48 (530)
T COG0488 32 IGLVGRNGAGKSTLLKI 48 (530)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44699999999955444
No 294
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=34.55 E-value=15 Score=29.66 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=16.0
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||.|||=-|.|-.--.+|.
T Consensus 28 ~~i~G~NGsGKSTLlk~L~G~~~p~ 52 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGVLKPD 52 (246)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCC
Confidence 4578999999995554433333443
No 295
>KOG3886|consensus
Probab=34.49 E-value=22 Score=31.86 Aligned_cols=14 Identities=50% Similarity=0.781 Sum_probs=11.2
Q ss_pred ceeeeeccCCCcee
Q psy13769 108 DLRFVGRSGRGKSF 121 (155)
Q Consensus 108 DLRFvGRSGRGKsf 121 (155)
-+=.+||||+|||-
T Consensus 6 KvlLMGrsGsGKsS 19 (295)
T KOG3886|consen 6 KVLLMGRSGSGKSS 19 (295)
T ss_pred eEEEeccCCCCccc
Confidence 34578999999984
No 296
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=34.44 E-value=15 Score=29.50 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=13.0
Q ss_pred eeeeeccCCCceeEEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSIM 126 (155)
Q Consensus 109 LRFvGRSGRGKsftltIt 126 (155)
+=.+|.||.|||=-|.+-
T Consensus 49 ~~I~G~nGsGKSTLl~~l 66 (267)
T PRK14237 49 TALIGPSGSGKSTYLRSL 66 (267)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 447899999999544443
No 297
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=34.44 E-value=15 Score=31.17 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=17.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=.+|.||+|||=-+.+-.-..||.
T Consensus 44 ~~IvG~sGsGKSTLl~~l~gl~~p~ 68 (327)
T PRK11308 44 LAVVGESGCGKSTLARLLTMIETPT 68 (327)
T ss_pred EEEECCCCCcHHHHHHHHHcCCCCC
Confidence 4468999999997666555555553
No 298
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.37 E-value=15 Score=30.00 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=15.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-|.+-.---+|
T Consensus 36 ~~iiG~NGaGKSTLl~~l~Gl~~p 59 (287)
T PRK13641 36 VALVGHTGSGKSTLMQHFNALLKP 59 (287)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 446899999999555444433344
No 299
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=34.22 E-value=16 Score=27.39 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=10.9
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
..-++|++|.|||
T Consensus 43 ~I~iiG~~g~GKS 55 (204)
T cd01878 43 TVALVGYTNAGKS 55 (204)
T ss_pred eEEEECCCCCCHH
Confidence 4568899999997
No 300
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=34.15 E-value=16 Score=28.62 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=11.5
Q ss_pred eeeeccCCCceeEEE
Q psy13769 110 RFVGRSGRGKSFTLS 124 (155)
Q Consensus 110 RFvGRSGRGKsftlt 124 (155)
=++|.||.|||=-|.
T Consensus 26 ~i~G~NGsGKTTLl~ 40 (204)
T cd03240 26 LIVGQNGAGKTTIIE 40 (204)
T ss_pred EEECCCCCCHHHHHH
Confidence 468999999985444
No 301
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=34.12 E-value=16 Score=27.97 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=15.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-++|.||.|||=-|.+-.--.||
T Consensus 33 ~~i~G~nGsGKSTLl~~i~G~~~~ 56 (220)
T cd03245 33 VAIIGRVGSGKSTLLKLLAGLYKP 56 (220)
T ss_pred EEEECCCCCCHHHHHHHHhcCcCC
Confidence 457899999998655444333343
No 302
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=34.08 E-value=16 Score=28.87 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=10.6
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+-+.|.||.|||-
T Consensus 36 igi~G~~GsGKTT 48 (229)
T PRK09270 36 VGIAGPPGAGKST 48 (229)
T ss_pred EEEECCCCCCHHH
Confidence 4567899999985
No 303
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=33.98 E-value=16 Score=32.85 Aligned_cols=16 Identities=50% Similarity=0.773 Sum_probs=13.1
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+=|+|.||+||+=+|.
T Consensus 30 ~vliGpSGsGKTTtLk 45 (309)
T COG1125 30 LVLIGPSGSGKTTTLK 45 (309)
T ss_pred EEEECCCCCcHHHHHH
Confidence 4689999999987664
No 304
>PRK08181 transposase; Validated
Probab=33.96 E-value=22 Score=29.97 Aligned_cols=19 Identities=42% Similarity=0.501 Sum_probs=15.3
Q ss_pred ccccceeeeeccCCCceeE
Q psy13769 104 AKFNDLRFVGRSGRGKSFT 122 (155)
Q Consensus 104 A~FNDLRFvGRSGRGKsft 122 (155)
.+...|=|+|.+|.||++-
T Consensus 104 ~~~~nlll~Gp~GtGKTHL 122 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHL 122 (269)
T ss_pred hcCceEEEEecCCCcHHHH
Confidence 3445699999999999863
No 305
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.94 E-value=16 Score=28.69 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=11.4
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+-.+|+||.|||=-+
T Consensus 32 ~~i~G~nGsGKSTLl 46 (250)
T PRK14266 32 TALIGPSGCGKSTFI 46 (250)
T ss_pred EEEECCCCCCHHHHH
Confidence 356899999998433
No 306
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=33.93 E-value=16 Score=28.08 Aligned_cols=15 Identities=47% Similarity=0.671 Sum_probs=11.4
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+-.+|.||.|||=-+
T Consensus 27 ~~i~G~nGsGKSTLl 41 (213)
T TIGR01277 27 VAIMGPSGAGKSTLL 41 (213)
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999998433
No 307
>KOG1068|consensus
Probab=33.90 E-value=25 Score=30.59 Aligned_cols=13 Identities=62% Similarity=0.810 Sum_probs=10.9
Q ss_pred EeeeCCCCCCCCC
Q psy13769 143 VTVDGPREPRSKS 155 (155)
Q Consensus 143 VTVDGPRePR~k~ 155 (155)
..|.||||+|.|+
T Consensus 51 ~aV~GPre~~~~~ 63 (245)
T KOG1068|consen 51 CAVYGPREIRGKS 63 (245)
T ss_pred EEEeCCccccccc
Confidence 5799999999863
No 308
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=33.88 E-value=16 Score=29.87 Aligned_cols=25 Identities=40% Similarity=0.590 Sum_probs=17.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=.+|.||+|||=-|.+-.--.+|+
T Consensus 29 ~~IvG~nGsGKSTLlk~l~Gl~~p~ 53 (255)
T cd03236 29 LGLVGPNGIGKSTALKILAGKLKPN 53 (255)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCCC
Confidence 5678999999996655544445554
No 309
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=33.84 E-value=17 Score=23.85 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=13.6
Q ss_pred ccceeeeeccCCCceeE
Q psy13769 106 FNDLRFVGRSGRGKSFT 122 (155)
Q Consensus 106 FNDLRFvGRSGRGKsft 122 (155)
-.-+-++|-+|.||+..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 34578899999999854
No 310
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=33.82 E-value=17 Score=26.44 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 17 v~ivG~~~~GKT 28 (173)
T cd04154 17 ILILGLDNAGKT 28 (173)
T ss_pred EEEECCCCCCHH
Confidence 448999999997
No 311
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=33.81 E-value=59 Score=23.41 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=10.7
Q ss_pred CCceeEEEEEEec
Q psy13769 117 RGKSFTLSIMVGS 129 (155)
Q Consensus 117 RGKsftltItv~t 129 (155)
.|+.|+|.|.+..
T Consensus 81 ~g~~F~i~I~~~~ 93 (133)
T PF00337_consen 81 PGQPFEIRIRVEE 93 (133)
T ss_dssp TTSEEEEEEEEES
T ss_pred CCceEEEEEEEec
Confidence 5899999998763
No 312
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.79 E-value=15 Score=30.12 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=15.8
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||+|||=-+.+-.-..+|.
T Consensus 35 v~i~G~nGsGKSTLl~~l~Gl~~p~ 59 (288)
T PRK13643 35 TALIGHTGSGKSTLLQHLNGLLQPT 59 (288)
T ss_pred EEEECCCCChHHHHHHHHhcCCCCC
Confidence 4468999999995444433333443
No 313
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.78 E-value=17 Score=27.80 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=13.3
Q ss_pred eeeeeccCCCceeEEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSIM 126 (155)
Q Consensus 109 LRFvGRSGRGKsftltIt 126 (155)
+-.+|.||.|||=-|.+-
T Consensus 36 ~~l~G~nGsGKSTLl~~l 53 (192)
T cd03232 36 TALMGESGAGKTTLLDVL 53 (192)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 457899999998655543
No 314
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.67 E-value=16 Score=29.34 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=12.2
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=.+|.||.|||=-+.+
T Consensus 38 ~~I~G~nGsGKSTLl~~ 54 (269)
T PRK13648 38 TSIVGHNGSGKSTIAKL 54 (269)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34689999999854433
No 315
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=33.57 E-value=16 Score=28.41 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=15.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-|.+-.-..||
T Consensus 34 ~~i~G~nGsGKSTLl~~l~G~~~p 57 (237)
T PRK11614 34 VTLIGANGAGKTTLLGTLCGDPRA 57 (237)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCC
Confidence 346899999999555444334444
No 316
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.48 E-value=16 Score=28.98 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=11.7
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+=.+|.||.|||=-|.
T Consensus 41 ~~l~G~nGsGKSTLl~ 56 (259)
T PRK14274 41 TAIIGPSGCGKSTFIK 56 (259)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3468999999994443
No 317
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=33.44 E-value=17 Score=29.03 Aligned_cols=17 Identities=47% Similarity=0.663 Sum_probs=12.8
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=++|.||.|||=-+.+
T Consensus 25 ~~l~G~nGsGKSTLl~~ 41 (248)
T PRK03695 25 LHLVGPNGAGKSTLLAR 41 (248)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45789999999855444
No 318
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=33.39 E-value=17 Score=27.68 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=15.1
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-+.+-.--.+|
T Consensus 34 ~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 34 VAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred EEEECCCCCCHHHHHHHHhCcCCC
Confidence 345799999998655443333344
No 319
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=33.25 E-value=16 Score=26.33 Aligned_cols=17 Identities=41% Similarity=0.649 Sum_probs=10.4
Q ss_pred cceeeeeccCCCceeEE
Q psy13769 107 NDLRFVGRSGRGKSFTL 123 (155)
Q Consensus 107 NDLRFvGRSGRGKsftl 123 (155)
+-+=++|-+|.|||.-|
T Consensus 25 ~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLL 41 (185)
T ss_dssp --EEE-B-TTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 55678899999998643
No 320
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.18 E-value=17 Score=29.61 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=12.8
Q ss_pred eeeeeccCCCceeEEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSIM 126 (155)
Q Consensus 109 LRFvGRSGRGKsftltIt 126 (155)
+=++|.||.|||=-|.+-
T Consensus 31 ~~i~G~nGsGKSTLl~~l 48 (274)
T PRK13644 31 IGIIGKNGSGKSTLALHL 48 (274)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 346899999999554443
No 321
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=32.78 E-value=17 Score=32.63 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=16.3
Q ss_pred ceeeeeccCCCceeEEEEEEecCCce
Q psy13769 108 DLRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 108 DLRFvGRSGRGKsftltItv~t~Ppq 133 (155)
=+=++|.||.|||=-+.+-.--.+|+
T Consensus 343 ~~~ivG~sGsGKSTLl~ll~g~~~p~ 368 (569)
T PRK10789 343 MLGICGPTGSGKSTLLSLIQRHFDVS 368 (569)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC
Confidence 34579999999985443333334443
No 322
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.78 E-value=18 Score=29.55 Aligned_cols=12 Identities=42% Similarity=0.764 Sum_probs=10.1
Q ss_pred eeeeccCCCcee
Q psy13769 110 RFVGRSGRGKSF 121 (155)
Q Consensus 110 RFvGRSGRGKsf 121 (155)
=|+|.+|.|||=
T Consensus 25 ~i~G~nGsGKS~ 36 (276)
T cd03241 25 VLTGETGAGKSI 36 (276)
T ss_pred EEEcCCCCCHHH
Confidence 468999999984
No 323
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=32.66 E-value=16 Score=29.28 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=11.2
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=|+|.||+||+-
T Consensus 9 i~ivG~sgsGKTT 21 (173)
T PRK10751 9 LAIAAWSGTGKTT 21 (173)
T ss_pred EEEECCCCChHHH
Confidence 5689999999983
No 324
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=32.60 E-value=13 Score=31.54 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=18.7
Q ss_pred hhhhcccccccceeee--eccCCCceeEEE
Q psy13769 97 AVVKNQVAKFNDLRFV--GRSGRGKSFTLS 124 (155)
Q Consensus 97 avmknqvA~FNDLRFv--GRSGRGKsftlt 124 (155)
..|+++...=.+.|++ |..|.|||++|.
T Consensus 12 ~~l~~~~~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 12 NKLKEADKSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred HHHHHhcccCCceEEEEECCCCCCHHHHHH
Confidence 3445544444467765 999999998763
No 325
>PRK13796 GTPase YqeH; Provisional
Probab=32.41 E-value=41 Score=29.19 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=25.4
Q ss_pred EEEEeecCCCccchhcchhhhhhhcccccccceeeeeccCCCce
Q psy13769 77 IVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKS 120 (155)
Q Consensus 77 ~Vtv~AGNDEn~~aELRN~tavmknqvA~FNDLRFvGRSGRGKs 120 (155)
.+.++|-++++ ..||.+...-..+ =.|.-|||.++.|||
T Consensus 136 v~~vSAk~g~g-I~eL~~~I~~~~~----~~~v~vvG~~NvGKS 174 (365)
T PRK13796 136 VVLISAQKGHG-IDELLEAIEKYRE----GRDVYVVGVTNVGKS 174 (365)
T ss_pred EEEEECCCCCC-HHHHHHHHHHhcC----CCeEEEEcCCCCcHH
Confidence 45677776655 4555555433221 247899999999997
No 326
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=32.30 E-value=17 Score=33.31 Aligned_cols=15 Identities=47% Similarity=0.594 Sum_probs=12.1
Q ss_pred cceeeeeccCCCcee
Q psy13769 107 NDLRFVGRSGRGKSF 121 (155)
Q Consensus 107 NDLRFvGRSGRGKsf 121 (155)
.-.-.+|+||.|||=
T Consensus 484 ~~vaivG~sGsGKST 498 (694)
T TIGR01846 484 EFIGIVGPSGSGKST 498 (694)
T ss_pred CEEEEECCCCCCHHH
Confidence 345689999999983
No 327
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=32.26 E-value=18 Score=29.88 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=17.4
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||.|||=.|.+-.---+|.
T Consensus 22 ~~l~G~NGaGKSTLl~~l~Gl~~p~ 46 (302)
T TIGR01188 22 FGFLGPNGAGKTTTIRMLTTLLRPT 46 (302)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4578999999997665554444553
No 328
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=32.21 E-value=17 Score=32.65 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=15.8
Q ss_pred ceeeeeccCCCceeEEEEEEecCCce
Q psy13769 108 DLRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 108 DLRFvGRSGRGKsftltItv~t~Ppq 133 (155)
=+=.||.||.|||=-+.+-.--.+|+
T Consensus 368 ~~aivG~sGsGKSTL~~ll~g~~~p~ 393 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQLLTRAWDPQ 393 (574)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34569999999994433333333443
No 329
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=32.19 E-value=18 Score=27.97 Aligned_cols=10 Identities=60% Similarity=0.979 Sum_probs=9.2
Q ss_pred eeeccCCCce
Q psy13769 111 FVGRSGRGKS 120 (155)
Q Consensus 111 FvGRSGRGKs 120 (155)
++|++|.|||
T Consensus 27 i~G~NGsGKS 36 (178)
T cd03239 27 IVGPNGSGKS 36 (178)
T ss_pred EECCCCCCHH
Confidence 7899999997
No 330
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=32.09 E-value=18 Score=28.11 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=15.4
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-|.+-.--.||
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (237)
T cd03252 31 VGIVGRSGSGKSTLTKLIQRFYVP 54 (237)
T ss_pred EEEECCCCCCHHHHHHHHhcCcCC
Confidence 557899999998544433333344
No 331
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=31.94 E-value=18 Score=31.31 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=16.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||.|||=-|.+-.--.+|+
T Consensus 32 ~~l~G~nGsGKSTLL~~iaGl~~p~ 56 (369)
T PRK11000 32 VVFVGPSGCGKSTLLRMIAGLEDIT 56 (369)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC
Confidence 4578999999996555544444443
No 332
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=31.80 E-value=18 Score=27.03 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=15.1
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-++|.||.|||=-|.+-.--.+|
T Consensus 31 ~~i~G~nGsGKStLl~~l~G~~~~ 54 (173)
T cd03246 31 LAIIGPSGSGKSTLARLILGLLRP 54 (173)
T ss_pred EEEECCCCCCHHHHHHHHHhccCC
Confidence 457899999998544433333344
No 333
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=31.79 E-value=18 Score=32.75 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=15.2
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||+|||=-+.+-.--.+|
T Consensus 364 ~~ivG~sGsGKSTL~~ll~g~~~~ 387 (585)
T TIGR01192 364 VAIVGPTGAGKTTLINLLQRVYDP 387 (585)
T ss_pred EEEECCCCCCHHHHHHHHccCCCC
Confidence 456899999999444333333444
No 334
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=31.78 E-value=20 Score=29.08 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=17.1
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+-++|.||.|||=-+.+-.-..||.
T Consensus 36 ~~I~G~nGsGKSTLl~~l~Gl~~~~ 60 (277)
T PRK13642 36 VSIIGQNGSGKSTTARLIDGLFEEF 60 (277)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC
Confidence 6789999999986555444444443
No 335
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=31.75 E-value=25 Score=29.93 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=16.8
Q ss_pred hhcccccccceee-eeccCCCceeEE
Q psy13769 99 VKNQVAKFNDLRF-VGRSGRGKSFTL 123 (155)
Q Consensus 99 mknqvA~FNDLRF-vGRSGRGKsftl 123 (155)
+++-+.=||-.=| .|-+|.||+||+
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm 105 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTM 105 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEE
Confidence 3344445555433 489999999997
No 336
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=31.70 E-value=18 Score=31.20 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=16.8
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=.|.+----.+|
T Consensus 33 ~~l~GpsGsGKSTLLr~iaGl~~p 56 (353)
T TIGR03265 33 VCLLGPSGCGKTTLLRIIAGLERQ 56 (353)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Confidence 457899999999766554444444
No 337
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=31.68 E-value=26 Score=30.00 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=17.0
Q ss_pred hhcccccccceee-eeccCCCceeEEE
Q psy13769 99 VKNQVAKFNDLRF-VGRSGRGKSFTLS 124 (155)
Q Consensus 99 mknqvA~FNDLRF-vGRSGRGKsftlt 124 (155)
+++-+.-||=.=| .|=+|.||+||+.
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~ 107 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQ 107 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEec
Confidence 3333444554434 4899999999985
No 338
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=31.61 E-value=26 Score=29.17 Aligned_cols=25 Identities=32% Similarity=0.684 Sum_probs=16.1
Q ss_pred hcccccccceee-eeccCCCceeEEE
Q psy13769 100 KNQVAKFNDLRF-VGRSGRGKSFTLS 124 (155)
Q Consensus 100 knqvA~FNDLRF-vGRSGRGKsftlt 124 (155)
..-+.-+|=.=| .|-+|.||+|||.
T Consensus 73 ~~~~~G~~~~i~~yG~tgSGKT~tl~ 98 (335)
T smart00129 73 DSVLEGYNATIFAYGQTGSGKTYTMS 98 (335)
T ss_pred HHHhcCCceeEEEeCCCCCCCceEec
Confidence 333344443222 5899999999995
No 339
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=31.58 E-value=18 Score=32.07 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=16.4
Q ss_pred ceeeeeccCCCceeEEEEEEecCCce
Q psy13769 108 DLRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 108 DLRFvGRSGRGKsftltItv~t~Ppq 133 (155)
=.=.+|.||.|||=-+.+-.--.+|.
T Consensus 346 ~~~ivG~sGsGKSTL~~ll~g~~~~~ 371 (544)
T TIGR01842 346 ALAIIGPSGSGKSTLARLIVGIWPPT 371 (544)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45578999999995444433333443
No 340
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=31.55 E-value=19 Score=31.97 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=15.0
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||+|||=-|.+-.-..||
T Consensus 30 ~~liG~NGsGKSTLl~~l~Gl~~p 53 (530)
T PRK15064 30 YGLIGANGCGKSTFMKILGGDLEP 53 (530)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 446899999998544443333333
No 341
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=31.48 E-value=18 Score=29.59 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=17.1
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+-++|.+|+|||=-|.+-.--.||.
T Consensus 53 ~~liG~NGsGKSTLlk~L~Gl~~p~ 77 (264)
T PRK13546 53 IGLVGINGSGKSTLSNIIGGSLSPT 77 (264)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCCC
Confidence 5679999999996555544444443
No 342
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=31.48 E-value=19 Score=29.15 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=15.6
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-+.+-.-..+|
T Consensus 41 ~~i~G~nGsGKSTLl~~l~Gl~~p 64 (268)
T PRK10419 41 VALLGRSGCGKSTLARLLVGLESP 64 (268)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 446899999999655544333344
No 343
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=31.44 E-value=19 Score=28.60 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=15.8
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-++|.||.|||=-|.+-.-..||
T Consensus 30 ~~i~G~nGsGKSTLl~~i~G~~~~ 53 (256)
T TIGR03873 30 TGLLGPNGSGKSTLLRLLAGALRP 53 (256)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCC
Confidence 447899999998555444444444
No 344
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=31.28 E-value=19 Score=25.92 Aligned_cols=12 Identities=58% Similarity=0.888 Sum_probs=10.1
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 6 i~vvG~~~~GKS 17 (167)
T cd01867 6 LLLIGDSGVGKS 17 (167)
T ss_pred EEEECCCCCCHH
Confidence 447999999997
No 345
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=31.22 E-value=18 Score=33.27 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=16.4
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.||.||+|||=.|.+-.--.||
T Consensus 45 ~~lvG~nGsGKSTLl~~l~Gll~p 68 (623)
T PRK10261 45 LAIVGESGSGKSVTALALMRLLEQ 68 (623)
T ss_pred EEEECCCCChHHHHHHHHHcCCCC
Confidence 446899999999665554444444
No 346
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=31.16 E-value=19 Score=29.89 Aligned_cols=12 Identities=58% Similarity=0.839 Sum_probs=10.2
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
|=.+|+||.|||
T Consensus 7 I~vvG~sg~GKS 18 (276)
T cd01850 7 IMVVGESGLGKS 18 (276)
T ss_pred EEEEcCCCCCHH
Confidence 457999999996
No 347
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=31.12 E-value=25 Score=29.67 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=23.2
Q ss_pred cCCCccchhcchhhhhhhcccccccceee-eeccCCCceeEEE
Q psy13769 83 GNDDNYCGELRNCTAVVKNQVAKFNDLRF-VGRSGRGKSFTLS 124 (155)
Q Consensus 83 GNDEn~~aELRN~tavmknqvA~FNDLRF-vGRSGRGKsftlt 124 (155)
.|++-|....+ -++++-+.-||-.=| .|-+|.||+||+.
T Consensus 64 ~q~~vf~~~~~---plv~~~~~G~n~~i~ayGqtGSGKTyTm~ 103 (322)
T cd01367 64 TNEEVYRSTVK---PLIPHVFEGGVATCFAYGQTGSGKTYTML 103 (322)
T ss_pred CHHHHHHHHHH---HHHHHHhCCCceEEEeccCCCCCCceEec
Confidence 34444443333 234444455565544 3889999999985
No 348
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=31.00 E-value=20 Score=23.56 Aligned_cols=11 Identities=55% Similarity=0.758 Sum_probs=8.9
Q ss_pred eeeccCCCcee
Q psy13769 111 FVGRSGRGKSF 121 (155)
Q Consensus 111 FvGRSGRGKsf 121 (155)
+.|-+|.|||-
T Consensus 4 i~G~~gsGKst 14 (69)
T cd02019 4 ITGGSGSGKST 14 (69)
T ss_pred EECCCCCCHHH
Confidence 57899999973
No 349
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=30.99 E-value=19 Score=28.36 Aligned_cols=16 Identities=50% Similarity=0.862 Sum_probs=11.9
Q ss_pred eeeeccCCCceeEEEE
Q psy13769 110 RFVGRSGRGKSFTLSI 125 (155)
Q Consensus 110 RFvGRSGRGKsftltI 125 (155)
=.+|.||.|||=-|.+
T Consensus 51 ~i~G~NGsGKSTLl~~ 66 (236)
T cd03267 51 GFIGPNGAGKTTTLKI 66 (236)
T ss_pred EEECCCCCCHHHHHHH
Confidence 3689999999855444
No 350
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.97 E-value=19 Score=29.67 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=15.1
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-+.+-.---+|
T Consensus 36 ~~i~G~nGsGKSTLl~~l~Gl~~p 59 (290)
T PRK13634 36 VAIIGHTGSGKSTLLQHLNGLLQP 59 (290)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 456899999999544433333344
No 351
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.92 E-value=19 Score=29.88 Aligned_cols=16 Identities=44% Similarity=0.565 Sum_probs=11.8
Q ss_pred eeeeccCCCceeEEEE
Q psy13769 110 RFVGRSGRGKSFTLSI 125 (155)
Q Consensus 110 RFvGRSGRGKsftltI 125 (155)
=.+|.||.|||=-|.+
T Consensus 75 ~IvG~nGsGKSTLl~~ 90 (305)
T PRK14264 75 ALIGPSGCGKSTFLRC 90 (305)
T ss_pred EEECCCCCCHHHHHHH
Confidence 3689999999854443
No 352
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.92 E-value=19 Score=28.25 Aligned_cols=17 Identities=41% Similarity=0.524 Sum_probs=12.7
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+-.+|.||.|||=-+.+
T Consensus 32 ~~i~G~nGsGKSTLl~~ 48 (249)
T PRK14253 32 TALIGPSGCGKSTLLRC 48 (249)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45689999999955443
No 353
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=30.91 E-value=20 Score=28.84 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=24.4
Q ss_pred hhcchhhhhhhcccccccceeeeeccCCCceeE
Q psy13769 90 GELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFT 122 (155)
Q Consensus 90 aELRN~tavmknqvA~FNDLRFvGRSGRGKsft 122 (155)
.+|+......++.-.+.+.+=|.|-+|.||+.-
T Consensus 14 ~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 14 EQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTL 46 (305)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHH
Confidence 456666665555556677788999999999843
No 354
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=30.90 E-value=19 Score=26.54 Aligned_cols=11 Identities=55% Similarity=0.706 Sum_probs=9.3
Q ss_pred eeeccCCCcee
Q psy13769 111 FVGRSGRGKSF 121 (155)
Q Consensus 111 FvGRSGRGKsf 121 (155)
++|-||.|||-
T Consensus 4 i~GpsGsGKst 14 (137)
T cd00071 4 LSGPSGVGKST 14 (137)
T ss_pred EECCCCCCHHH
Confidence 68999999873
No 355
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.86 E-value=19 Score=27.67 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=15.7
Q ss_pred eeeeccCCCceeEEEEEEecCCce
Q psy13769 110 RFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 110 RFvGRSGRGKsftltItv~t~Ppq 133 (155)
=.+|.||.|||=-|.+-.--.||+
T Consensus 33 ~i~G~nGsGKSTLl~~l~G~~~~~ 56 (229)
T cd03254 33 AIVGPTGAGKTTLINLLMRFYDPQ 56 (229)
T ss_pred EEECCCCCCHHHHHHHHhcCcCCC
Confidence 357999999986555444444443
No 356
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=30.83 E-value=19 Score=28.72 Aligned_cols=14 Identities=43% Similarity=0.596 Sum_probs=10.6
Q ss_pred eeeeccCCCceeEE
Q psy13769 110 RFVGRSGRGKSFTL 123 (155)
Q Consensus 110 RFvGRSGRGKsftl 123 (155)
=.+|.||.|||=-+
T Consensus 51 ~i~G~nGsGKSTLl 64 (257)
T cd03288 51 GICGRTGSGKSSLS 64 (257)
T ss_pred EEECCCCCCHHHHH
Confidence 35799999998433
No 357
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.80 E-value=19 Score=28.79 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=16.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-.+|.||.|||=-|.+-.-..||
T Consensus 36 ~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 36 TAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred EEEECCCCCCHHHHHHHHhcccCC
Confidence 557899999998655554444454
No 358
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.72 E-value=19 Score=27.80 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=15.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=.+|.+|.|||=-|.+-.--.||.
T Consensus 30 ~~l~G~nGsGKSTLl~~i~Gl~~~~ 54 (236)
T cd03253 30 VAIVGPSGSGKSTILRLLFRFYDVS 54 (236)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCC
Confidence 3468999999985444433334443
No 359
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=30.71 E-value=19 Score=30.19 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=15.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+-++|.||+|||=-+.+-.---||
T Consensus 36 v~iiG~nGsGKSTLl~~L~Gl~~p 59 (305)
T PRK13651 36 IAIIGQTGSGKTTFIEHLNALLLP 59 (305)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Confidence 567899999999544443333344
No 360
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=30.63 E-value=20 Score=32.26 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=12.1
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=++|.||+|||=-|.|
T Consensus 36 ~~iiG~NGsGKSTLlk~ 52 (556)
T PRK11819 36 IGVLGLNGAGKSTLLRI 52 (556)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34689999999844433
No 361
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=30.53 E-value=20 Score=26.29 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 18 v~~~G~~~~GKT 29 (174)
T cd04153 18 VIIVGLDNAGKT 29 (174)
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 362
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=30.51 E-value=21 Score=24.48 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=9.5
Q ss_pred eeeeccCCCceeE
Q psy13769 110 RFVGRSGRGKSFT 122 (155)
Q Consensus 110 RFvGRSGRGKsft 122 (155)
=+.|-+|.|||..
T Consensus 8 ~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 8 VISGPPGSGKTTL 20 (131)
T ss_dssp EEEE-TTSSHHHH
T ss_pred EEEcCCCCCHHHH
Confidence 3679999999864
No 363
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.46 E-value=20 Score=29.54 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=12.3
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=.+|+||.|||=-|.|
T Consensus 68 ~~I~G~nGsGKSTLl~~ 84 (285)
T PRK14254 68 TAMIGPSGCGKSTFLRC 84 (285)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44689999999854443
No 364
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.22 E-value=20 Score=28.98 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=15.4
Q ss_pred eeeeccCCCceeEEEEEEecCCce
Q psy13769 110 RFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 110 RFvGRSGRGKsftltItv~t~Ppq 133 (155)
=.+|.||.|||=-|.+-.--.||.
T Consensus 54 ~l~G~nGsGKSTLl~~L~Gl~~p~ 77 (269)
T cd03294 54 VIMGLSGSGKSTLLRCINRLIEPT 77 (269)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCC
Confidence 358999999985554443344443
No 365
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.20 E-value=20 Score=30.36 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=16.2
Q ss_pred ceeeeeccCCCceeEEEEEEecCCc
Q psy13769 108 DLRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 108 DLRFvGRSGRGKsftltItv~t~Pp 132 (155)
=+=.+|.||.|||=-+.+-.--.+|
T Consensus 54 ~~~I~G~nGsGKSTLl~~L~Gl~~p 78 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLIKS 78 (320)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3667999999998554443333333
No 366
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=30.15 E-value=20 Score=27.34 Aligned_cols=12 Identities=50% Similarity=0.758 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|-+|+|||
T Consensus 7 I~liG~~GaGKS 18 (172)
T PRK05057 7 IFLVGPMGAGKS 18 (172)
T ss_pred EEEECCCCcCHH
Confidence 568999999997
No 367
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=30.11 E-value=20 Score=31.30 Aligned_cols=16 Identities=44% Similarity=0.613 Sum_probs=11.9
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+=.+|.||+|||=-|.
T Consensus 32 ~~liG~nGsGKSTLl~ 47 (490)
T PRK10938 32 WAFVGANGSGKSALAR 47 (490)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4468999999984443
No 368
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=30.07 E-value=1.6e+02 Score=20.45 Aligned_cols=83 Identities=14% Similarity=0.243 Sum_probs=52.1
Q ss_pred chhHHHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEEeecCCCCeEEEEeecCCCccchhcchhhhh
Q psy13769 19 TSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAV 98 (155)
Q Consensus 19 ~~~~~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL~~VpDGT~Vtv~AGNDEn~~aELRN~tav 98 (155)
-...+..+.+++..|.|.++++..-.++|..- .+ ...|+.....-.+.-.
T Consensus 28 l~~~~~~~~~~~~~~~g~~~~~~gd~~~~~f~---------------------~~---------~~~~~~~~~A~~~a~~ 77 (177)
T cd07302 28 LNEYFSAFDEIIERHGGTVDKTIGDAVMAVFG---------------------LP---------GAHEDHAERAVRAALE 77 (177)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCceEEEEeC---------------------CC---------CCchhHHHHHHHHHHH
Confidence 33566788888888888887765444333311 00 0145555555566666
Q ss_pred hhcccccccceeeeeccCCCceeEEEEEEecCCceeee
Q psy13769 99 VKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIAS 136 (155)
Q Consensus 99 mknqvA~FNDLRFvGRSGRGKsftltItv~t~Ppqvat 136 (155)
|...+..++... ..+..+.+.|-|++.|.....
T Consensus 78 i~~~~~~~~~~~-----~~~~~~~~riGi~~G~~~~g~ 110 (177)
T cd07302 78 MQEALAELNAER-----EGGPPLRLRIGIHTGPVVAGV 110 (177)
T ss_pred HHHHHHHHhhcc-----cCCCCeEEEEEEecceEEEEe
Confidence 666777776554 556788888888888765554
No 369
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.99 E-value=20 Score=29.31 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=17.4
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=.+|.||.|||=-|.+-.-..+|.
T Consensus 36 ~~i~G~nGaGKSTLl~~i~G~~~p~ 60 (279)
T PRK13635 36 VAIVGHNGSGKSTLAKLLNGLLLPE 60 (279)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC
Confidence 4568999999997665554444553
No 370
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=29.93 E-value=22 Score=29.43 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=15.6
Q ss_pred cccceeeeeccCCCcee
Q psy13769 105 KFNDLRFVGRSGRGKSF 121 (155)
Q Consensus 105 ~FNDLRFvGRSGRGKsf 121 (155)
+-+.|-|.|-+|.||+|
T Consensus 104 ~~~nl~l~G~~G~GKTh 120 (254)
T COG1484 104 RGENLVLLGPPGVGKTH 120 (254)
T ss_pred cCCcEEEECCCCCcHHH
Confidence 67799999999999997
No 371
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=29.91 E-value=19 Score=31.48 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=17.0
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||.|||=.|.+-.--.||.
T Consensus 22 ~~l~G~sGsGKSTLLr~L~Gl~~p~ 46 (363)
T TIGR01186 22 FVIMGLSGSGKSTTVRMLNRLIEPT 46 (363)
T ss_pred EEEECCCCChHHHHHHHHhCCCCCC
Confidence 4468999999996655544444553
No 372
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=29.90 E-value=21 Score=28.75 Aligned_cols=17 Identities=47% Similarity=0.636 Sum_probs=12.6
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+-.+|.||.|||=-|.+
T Consensus 39 ~~i~G~nGsGKSTLl~~ 55 (264)
T PRK14243 39 TAFIGPSGCGKSTILRC 55 (264)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45789999999854443
No 373
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=29.86 E-value=2.6e+02 Score=21.54 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=53.5
Q ss_pred hhccceee-cCCCcEEeecCCCccccCCCCCcceEEEEeecCCCCeEEEEeecCCCccchhcchhhhhhhccccccccee
Q psy13769 32 EYHGELVQ-TGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLR 110 (155)
Q Consensus 32 ~~~gelv~-T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL~~VpDGT~Vtv~AGNDEn~~aELRN~tavmknqvA~FNDLR 110 (155)
+..+.||. .++=.+.|+. |..++...|++=-+...|+|..|...-.|.+++.. -+++-=
T Consensus 4 ~~~~~lv~p~~sv~LsC~~------sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~--------------~~~~r~ 63 (115)
T cd05721 4 QQSPVLASSNGAASLVCEY------TYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQ--------------TSLDGF 63 (115)
T ss_pred ecCCeEEcCCCCEEEEEEe------cCCccccEEEEEEEEeCCCCcEEEEEEeCCCcccc--------------ccCCCe
Confidence 34445544 4556789988 66778788999999999999888888888877221 111211
Q ss_pred eeeccCCCceeEEEEEEe
Q psy13769 111 FVGRSGRGKSFTLSIMVG 128 (155)
Q Consensus 111 FvGRSGRGKsftltItv~ 128 (155)
.+.|.-...+++|+|+=.
T Consensus 64 tcs~~~s~ntv~L~l~~L 81 (115)
T cd05721 64 NCDGTLGNEQVNFTLQNL 81 (115)
T ss_pred EEeEeCCCCEEEEEEcCC
Confidence 366777888899988643
No 374
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=29.84 E-value=20 Score=28.90 Aligned_cols=17 Identities=47% Similarity=0.622 Sum_probs=12.5
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=.+|.||.|||=-+.+
T Consensus 54 ~~I~G~nGsGKSTLl~~ 70 (272)
T PRK14236 54 TAFIGPSGCGKSTLLRC 70 (272)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34689999999855444
No 375
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=29.84 E-value=36 Score=27.97 Aligned_cols=44 Identities=20% Similarity=0.192 Sum_probs=25.8
Q ss_pred EEEEeecCCCccchhcchhhhh-hhccccc---------ccceeeeeccCCCcee
Q psy13769 77 IVTIRAGNDDNYCGELRNCTAV-VKNQVAK---------FNDLRFVGRSGRGKSF 121 (155)
Q Consensus 77 ~Vtv~AGNDEn~~aELRN~tav-mknqvA~---------FNDLRFvGRSGRGKsf 121 (155)
.+.++|-+.++ ..+|++...- +++...+ --.+-++|.+|.|||=
T Consensus 80 vi~iSa~~~~g-i~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSs 133 (276)
T TIGR03596 80 ALAINAKKGKG-VKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKST 133 (276)
T ss_pred EEEEECCCccc-HHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHH
Confidence 46677766654 3566555432 2222211 1137799999999983
No 376
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=29.74 E-value=21 Score=29.15 Aligned_cols=11 Identities=55% Similarity=0.694 Sum_probs=9.8
Q ss_pred eeeeccCCCce
Q psy13769 110 RFVGRSGRGKS 120 (155)
Q Consensus 110 RFvGRSGRGKs 120 (155)
=+.|.||.|||
T Consensus 22 Li~G~SG~GKS 32 (171)
T PF07475_consen 22 LITGPSGIGKS 32 (171)
T ss_dssp EEEESTTSSHH
T ss_pred EEECCCCCCHH
Confidence 47899999998
No 377
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=29.63 E-value=20 Score=31.59 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=10.2
Q ss_pred eeeccCCCceeE
Q psy13769 111 FVGRSGRGKSFT 122 (155)
Q Consensus 111 FvGRSGRGKsft 122 (155)
++|++|.|||=+
T Consensus 43 lvGktGVGKSSl 54 (313)
T TIGR00991 43 VMGKGGVGKSST 54 (313)
T ss_pred EECCCCCCHHHH
Confidence 789999999843
No 378
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=29.60 E-value=21 Score=25.46 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=10.2
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 8 i~vvG~~~~GKT 19 (170)
T cd04116 8 VILLGDGGVGKS 19 (170)
T ss_pred EEEECCCCCCHH
Confidence 458999999995
No 379
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=29.54 E-value=28 Score=33.38 Aligned_cols=14 Identities=57% Similarity=0.873 Sum_probs=12.2
Q ss_pred cceeeeeccCCCce
Q psy13769 107 NDLRFVGRSGRGKS 120 (155)
Q Consensus 107 NDLRFvGRSGRGKs 120 (155)
.-|=.||.||+|||
T Consensus 314 qTlGlVGESGSGKs 327 (534)
T COG4172 314 QTLGLVGESGSGKS 327 (534)
T ss_pred CeEEEEecCCCCcc
Confidence 35788999999998
No 380
>PF04763 DUF562: Protein of unknown function (DUF562); InterPro: IPR006850 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=29.53 E-value=30 Score=28.28 Aligned_cols=17 Identities=24% Similarity=0.589 Sum_probs=14.0
Q ss_pred eeeeccCCCceeEEEEE
Q psy13769 110 RFVGRSGRGKSFTLSIM 126 (155)
Q Consensus 110 RFvGRSGRGKsftltIt 126 (155)
||.+++-.|||||+-|+
T Consensus 68 ~~l~~~~~grsFTvI~~ 84 (146)
T PF04763_consen 68 QILNDDSQGRSFTVILT 84 (146)
T ss_pred HHhcCCccCceEEEEEE
Confidence 56677778999999887
No 381
>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein [].
Probab=29.43 E-value=1.6e+02 Score=23.92 Aligned_cols=123 Identities=20% Similarity=0.327 Sum_probs=75.7
Q ss_pred HHHHHHhhh--ccceeecCCCcE--EeecCCCccccC--CCCCcceEEEEeec----CCCCeEEEEee--cCCC------
Q psy13769 25 GIHEALQEY--HGELVQTGSPTI--LCSVLPTHWRSN--KSLPIAFKVVVLDD----VMDGTIVTIRA--GNDD------ 86 (155)
Q Consensus 25 ~~~~~l~~~--~gelv~T~sP~~--lCs~LP~HWRsN--KtLP~~FkVvaL~~----VpDGT~Vtv~A--GNDE------ 86 (155)
+|.+.|+++ .++-|..+.|.- +-...|..|.-. ..+|.+|-|++... -+-..+|+|.- ||=.
T Consensus 8 ti~dYl~~~gV~~~pv~~~~~~~p~v~lP~P~GW~~~~~~~~~~a~~vi~~~~~~~~~~Pnavv~V~kL~G~~Dp~e~l~ 87 (175)
T PF10738_consen 8 TIADYLESNGVTEEPVAPGDPGAPTVSLPTPPGWEPAPDPNPPWAYAVIVDPQADGGFPPNAVVTVSKLTGDFDPAEALE 87 (175)
T ss_pred CHHHHHHhcCceEEecCCCCCCCCEEeccCCcCcccCCCCCCCceEEEEEeccccCCCCCceEEEEEeccCCCCHHHHHH
Confidence 577888877 567777776533 445678899754 45778899996654 22234555542 3211
Q ss_pred ----------ccc------hhcchhhhhh------hcccccccceeeeeccCCCceeEEEEEEecCCceeeeeeeeeEEe
Q psy13769 87 ----------NYC------GELRNCTAVV------KNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVT 144 (155)
Q Consensus 87 ----------n~~------aELRN~tavm------knqvA~FNDLRFvGRSGRGKsftltItv~t~Ppqvaty~~AIKVT 144 (155)
+|- +++...-+.| +++..+--.=|-|-=.|-++.|-+.+++.+.-.|...+..|+++.
T Consensus 88 ~a~~d~~~l~g~~~~~~s~~~~~GfpS~~i~GtY~~~g~~~~~~~r~VV~~~~~~~Ylvqltvt~~~~qa~~~~~a~~aI 167 (175)
T PF10738_consen 88 HAPADAQNLPGFRELDGSPSDFSGFPSSQIEGTYDKDGMRLHTSQRTVVIPGDDQRYLVQLTVTTTADQAVALADATEAI 167 (175)
T ss_pred hchhhHhhCcCcccccCCccccCCCceeEEEEEEeeCCEEeEeEEEEEEEeCCCcEEEEEEEeeccccchhhhhhHHHHH
Confidence 111 1111111222 233334444456666778888999999999988888888888777
Q ss_pred eeC
Q psy13769 145 VDG 147 (155)
Q Consensus 145 VDG 147 (155)
++|
T Consensus 168 ~~g 170 (175)
T PF10738_consen 168 DEG 170 (175)
T ss_pred HcC
Confidence 766
No 382
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=29.42 E-value=21 Score=31.35 Aligned_cols=11 Identities=55% Similarity=0.872 Sum_probs=9.9
Q ss_pred eeeeccCCCce
Q psy13769 110 RFVGRSGRGKS 120 (155)
Q Consensus 110 RFvGRSGRGKs 120 (155)
-|+|=||+|||
T Consensus 37 AlIGPSGcGKS 47 (253)
T COG1117 37 ALIGPSGCGKS 47 (253)
T ss_pred EEECCCCcCHH
Confidence 47999999998
No 383
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.25 E-value=21 Score=27.53 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=16.6
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=.+|.||.|||=-+.+-.-..||.
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~p~ 55 (234)
T cd03251 31 VALVGPSGSGKSTLVNLIPRFYDVD 55 (234)
T ss_pred EEEECCCCCCHHHHHHHHhccccCC
Confidence 4468999999996655544444553
No 384
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=29.11 E-value=21 Score=31.41 Aligned_cols=24 Identities=33% Similarity=0.710 Sum_probs=15.2
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||+|||=-|.|-.--.||
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (506)
T PRK13549 34 VSLCGENGAGKSTLMKVLSGVYPH 57 (506)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 446899999999544443333343
No 385
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=28.99 E-value=21 Score=31.20 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=15.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||+|||=-|.+-.--.+|
T Consensus 27 ~~liG~nGsGKSTLl~~l~Gl~~p 50 (491)
T PRK10982 27 HALMGENGAGKSTLLKCLFGIYQK 50 (491)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCC
Confidence 346899999999554444333344
No 386
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=28.91 E-value=33 Score=28.35 Aligned_cols=25 Identities=28% Similarity=0.632 Sum_probs=15.9
Q ss_pred hcccccccceee-eeccCCCceeEEE
Q psy13769 100 KNQVAKFNDLRF-VGRSGRGKSFTLS 124 (155)
Q Consensus 100 knqvA~FNDLRF-vGRSGRGKsftlt 124 (155)
.+-+.-+|=.=| .|-+|.||+|||.
T Consensus 72 ~~~~~G~~~~i~~yG~tgSGKT~tl~ 97 (328)
T cd00106 72 ESVLEGYNGTIFAYGQTGSGKTYTMF 97 (328)
T ss_pred HHHhCCCceeEEEecCCCCCCeEEec
Confidence 333344444333 6899999999864
No 387
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=28.88 E-value=22 Score=29.69 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=15.8
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+-++|.||.|||=-+.+-.---||+
T Consensus 66 ~~liG~NGsGKSTLl~~I~Gl~~p~ 90 (282)
T cd03291 66 LAITGSTGSGKTSLLMLILGELEPS 90 (282)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4578999999985544433333443
No 388
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=28.80 E-value=24 Score=27.30 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=20.9
Q ss_pred CccchhcchhhhhhhcccccccceeeeeccCCCceeE
Q psy13769 86 DNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFT 122 (155)
Q Consensus 86 En~~aELRN~tavmknqvA~FNDLRFvGRSGRGKsft 122 (155)
+...+.+|+... +....+-+-|.|-+|.||+.-
T Consensus 26 ~~~~~~l~~~~~----~~~~~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 26 AELVARLRELAA----GPVADRFFYLWGEAGSGRSHL 58 (227)
T ss_pred HHHHHHHHHHHh----ccCCCCeEEEECCCCCCHHHH
Confidence 334444555433 334455688999999999743
No 389
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=28.64 E-value=22 Score=29.16 Aligned_cols=17 Identities=41% Similarity=0.493 Sum_probs=12.2
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=.+|.||.|||=-|.+
T Consensus 68 ~~l~G~nGsGKSTLl~~ 84 (286)
T PRK14275 68 TAIIGPSGCGKSTFLRA 84 (286)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34689999999854433
No 390
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=28.62 E-value=17 Score=32.71 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.1
Q ss_pred cCCCccccCCCCCcce---EEEEeecC
Q psy13769 49 VLPTHWRSNKSLPIAF---KVVVLDDV 72 (155)
Q Consensus 49 ~LP~HWRsNKtLP~~F---kVvaL~~V 72 (155)
-.|+||||.+||..-+ +|.++..|
T Consensus 89 ~~~s~~~~~~sl~~~l~~~~ipgi~gv 115 (382)
T CHL00197 89 KSSSNWRQQESLVSYLQRHKIPFIFGI 115 (382)
T ss_pred CCCCcccccCCHHHHHHHCCCceEeCC
Confidence 4799999999998776 58888766
No 391
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=28.44 E-value=30 Score=29.41 Aligned_cols=22 Identities=32% Similarity=0.735 Sum_probs=15.2
Q ss_pred cccccceee-eeccCCCceeEEE
Q psy13769 103 VAKFNDLRF-VGRSGRGKSFTLS 124 (155)
Q Consensus 103 vA~FNDLRF-vGRSGRGKsftlt 124 (155)
+.-||=.=| .|-+|.||+||+.
T Consensus 71 ~~G~n~ti~aYGqTGSGKTyTm~ 93 (337)
T cd01373 71 LSGYNGSIFAYGQTGSGKTYTMM 93 (337)
T ss_pred hCCCceeEEEeCCCCCCceEEec
Confidence 344554433 4789999999984
No 392
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=28.35 E-value=77 Score=23.16 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=10.4
Q ss_pred CCceeEEEEEEec
Q psy13769 117 RGKSFTLSIMVGS 129 (155)
Q Consensus 117 RGKsftltItv~t 129 (155)
+|+.|.|+|.+.-
T Consensus 75 ~g~~F~l~i~~~~ 87 (128)
T smart00276 75 PGQPFDLTIIVQP 87 (128)
T ss_pred CCCEEEEEEEEcC
Confidence 4899999998753
No 393
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=28.33 E-value=22 Score=31.06 Aligned_cols=24 Identities=38% Similarity=0.711 Sum_probs=16.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||+|||=-|.+-.-..||
T Consensus 30 ~~liG~nGsGKSTLl~~i~G~~~~ 53 (500)
T TIGR02633 30 VGLCGENGAGKSTLMKILSGVYPH 53 (500)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 346899999999666655444454
No 394
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=28.26 E-value=23 Score=28.93 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=11.1
Q ss_pred eeeeccCCCceeEEE
Q psy13769 110 RFVGRSGRGKSFTLS 124 (155)
Q Consensus 110 RFvGRSGRGKsftlt 124 (155)
=.+|.||.|||=-|.
T Consensus 51 ~I~G~nGsGKSTLl~ 65 (276)
T PRK14271 51 SLMGPTGSGKTTFLR 65 (276)
T ss_pred EEECCCCCCHHHHHH
Confidence 357999999984433
No 395
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=28.25 E-value=47 Score=27.89 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=18.6
Q ss_pred eeeeeccCCCce-----------eEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKS-----------FTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKs-----------ftltItv~t~Ppq 133 (155)
+=+.|-||.||| |.++|+..|-+|-
T Consensus 7 ~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR 42 (191)
T COG0194 7 IVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPR 42 (191)
T ss_pred EEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCC
Confidence 346788999985 7777777787763
No 396
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=28.14 E-value=24 Score=33.72 Aligned_cols=21 Identities=43% Similarity=0.608 Sum_probs=16.8
Q ss_pred ccccccceeeeeccCCCceeE
Q psy13769 102 QVAKFNDLRFVGRSGRGKSFT 122 (155)
Q Consensus 102 qvA~FNDLRFvGRSGRGKsft 122 (155)
+++.-.-|-.||-||+|||-|
T Consensus 32 ~i~~GEtlAlVGESGSGKSvT 52 (534)
T COG4172 32 DIEAGETLALVGESGSGKSVT 52 (534)
T ss_pred eecCCCEEEEEecCCCCccHH
Confidence 455555788999999999965
No 397
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=28.11 E-value=23 Score=31.20 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=16.0
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||+|||=-|.|-.--.+|
T Consensus 34 ~~liG~nGsGKSTLl~~i~Gl~~p 57 (510)
T PRK09700 34 HALLGENGAGKSTLMKVLSGIHEP 57 (510)
T ss_pred EEEECCCCCCHHHHHHHHcCCcCC
Confidence 346899999999655554444444
No 398
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=28.10 E-value=29 Score=29.42 Aligned_cols=13 Identities=46% Similarity=1.014 Sum_probs=11.3
Q ss_pred eeccCCCceeEEE
Q psy13769 112 VGRSGRGKSFTLS 124 (155)
Q Consensus 112 vGRSGRGKsftlt 124 (155)
.|=+|.||+|||.
T Consensus 87 yG~tgSGKTyTm~ 99 (334)
T cd01375 87 YGQTGAGKTFTMT 99 (334)
T ss_pred ecCCCCCCeEEcc
Confidence 4799999999984
No 399
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=28.06 E-value=23 Score=30.57 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=17.4
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+-++|.||.|||=-|.+-.--.+|.
T Consensus 31 ~~llGpsGsGKSTLLr~IaGl~~p~ 55 (353)
T PRK10851 31 VALLGPSGSGKTTLLRIIAGLEHQT 55 (353)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4568999999996665554444543
No 400
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.04 E-value=23 Score=28.96 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=15.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-|.+-.--.+|
T Consensus 36 ~~I~G~nGaGKSTLl~~l~G~~~p 59 (282)
T PRK13640 36 TALIGHNGSGKSTISKLINGLLLP 59 (282)
T ss_pred EEEECCCCCcHHHHHHHHhcccCC
Confidence 456899999998655544433333
No 401
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=28.02 E-value=30 Score=28.91 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=11.4
Q ss_pred eeccCCCceeEEE
Q psy13769 112 VGRSGRGKSFTLS 124 (155)
Q Consensus 112 vGRSGRGKsftlt 124 (155)
.|-+|.||+|||.
T Consensus 84 yG~tgSGKT~tl~ 96 (329)
T cd01366 84 YGQTGSGKTYTME 96 (329)
T ss_pred eCCCCCCCcEEec
Confidence 4899999999984
No 402
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=27.97 E-value=22 Score=36.59 Aligned_cols=13 Identities=46% Similarity=0.754 Sum_probs=11.1
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
=.=+||.||+|||
T Consensus 1196 ~vAIVG~SGsGKS 1208 (1466)
T PTZ00265 1196 TTAIVGETGSGKS 1208 (1466)
T ss_pred EEEEECCCCCCHH
Confidence 4557999999998
No 403
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=27.90 E-value=23 Score=30.63 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=17.6
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=.+|.||.|||=.|.+-.--.+|.
T Consensus 33 ~~llG~sGsGKSTLLr~iaGl~~p~ 57 (356)
T PRK11650 33 IVLVGPSGCGKSTLLRMVAGLERIT 57 (356)
T ss_pred EEEECCCCCcHHHHHHHHHCCCCCC
Confidence 4578999999997666555544553
No 404
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=27.83 E-value=23 Score=29.55 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=17.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.+|.|||=.+.|-.-.-+|.
T Consensus 36 ~gllGpNGaGKSTLl~~l~Gl~~p~ 60 (306)
T PRK13537 36 FGLLGPNGAGKTTTLRMLLGLTHPD 60 (306)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4679999999996665555444553
No 405
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=27.83 E-value=23 Score=30.22 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=16.6
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=.+|.||.|||=-|.+-.-..+|.
T Consensus 27 ~~l~G~nGsGKSTLl~~iaGl~~p~ 51 (352)
T PRK11144 27 TAIFGRSGAGKTSLINAISGLTRPQ 51 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4578999999996555444444443
No 406
>PRK06835 DNA replication protein DnaC; Validated
Probab=27.42 E-value=24 Score=30.66 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=20.2
Q ss_pred chhhhhhhcccc----cccceeeeeccCCCceeE
Q psy13769 93 RNCTAVVKNQVA----KFNDLRFVGRSGRGKSFT 122 (155)
Q Consensus 93 RN~tavmknqvA----~FNDLRFvGRSGRGKsft 122 (155)
+++.+..++-+. ..+.|=|.|-+|.||+|-
T Consensus 166 ~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThL 199 (329)
T PRK06835 166 EKILEKCKNFIENFDKNNENLLFYGNTGTGKTFL 199 (329)
T ss_pred HHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHH
Confidence 344444444444 346789999999999983
No 407
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=27.40 E-value=28 Score=28.14 Aligned_cols=17 Identities=47% Similarity=0.626 Sum_probs=12.9
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+-++|.||.|||=-+.+
T Consensus 37 ~~i~G~nGsGKSTLl~~ 53 (261)
T PRK14263 37 TGFIGPSGCGKSTVLRS 53 (261)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56789999999854443
No 408
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=27.23 E-value=29 Score=30.94 Aligned_cols=20 Identities=45% Similarity=0.464 Sum_probs=15.1
Q ss_pred cccceeeeeccCCCceeEEE
Q psy13769 105 KFNDLRFVGRSGRGKSFTLS 124 (155)
Q Consensus 105 ~FNDLRFvGRSGRGKsftlt 124 (155)
+-.=|=.||-||+|||-+..
T Consensus 30 ~GE~lgiVGESGsGKS~~~~ 49 (316)
T COG0444 30 KGEILGIVGESGSGKSVLAK 49 (316)
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 33457789999999996643
No 409
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=27.18 E-value=24 Score=26.92 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=17.9
Q ss_pred hhcccccccceeeeeccCCCceeEEEE
Q psy13769 99 VKNQVAKFNDLRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 99 mknqvA~FNDLRFvGRSGRGKsftltI 125 (155)
++..+..-.-+=++|.+|.|||=.+..
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~a 44 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNA 44 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHH
Confidence 333344444578999999999855443
No 410
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=27.12 E-value=24 Score=30.50 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=18.1
Q ss_pred eeeeeccCCCceeEEEEEEecCCcee
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQI 134 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppqv 134 (155)
+=++|.||.|||=.|.+-.--.+|.-
T Consensus 35 ~~llGpsGsGKSTLLr~IaGl~~p~~ 60 (351)
T PRK11432 35 VTLLGPSGCGKTTVLRLVAGLEKPTE 60 (351)
T ss_pred EEEECCCCCcHHHHHHHHHCCCCCCc
Confidence 45789999999977665544455543
No 411
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=27.06 E-value=24 Score=30.04 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=16.6
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=.+|.||.|||=-|.+-.--.+|.
T Consensus 26 ~~l~G~nGsGKSTLl~~iaGl~~p~ 50 (354)
T TIGR02142 26 TAIFGRSGSGKTTLIRLIAGLTRPD 50 (354)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4578999999996555444444443
No 412
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=26.90 E-value=14 Score=35.86 Aligned_cols=16 Identities=50% Similarity=0.740 Sum_probs=13.1
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
.=.+|.||.||||.+.
T Consensus 478 ~~I~G~TGSGKS~l~~ 493 (893)
T TIGR03744 478 LLILGPTGAGKSATLT 493 (893)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3578999999999763
No 413
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=26.79 E-value=25 Score=32.53 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=16.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|++|+|||=-|.|-.-..+|
T Consensus 30 v~LvG~NGsGKSTLLkiL~G~~~p 53 (638)
T PRK10636 30 VGLVGKNGCGKSTLLALLKNEISA 53 (638)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 456899999999666554444444
No 414
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=26.77 E-value=25 Score=27.42 Aligned_cols=24 Identities=46% Similarity=0.690 Sum_probs=14.8
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
.=.+|.||.|||=-|.+-.--.+|
T Consensus 15 ~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 15 LALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 346899999999444433333343
No 415
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=26.76 E-value=22 Score=32.71 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=13.1
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
.=.+|.||.||||.+
T Consensus 437 ~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 437 TLIFGPTGSGKTTLL 451 (785)
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999976
No 416
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=26.75 E-value=61 Score=31.44 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=18.3
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeCC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDGP 148 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDGP 148 (155)
.|+.|++||.+. ...++|||||=
T Consensus 302 ~G~~F~lti~~g---------~egf~v~VnG~ 324 (636)
T PLN03133 302 QGYLSVATLRVG---------TEGIQMTVDGK 324 (636)
T ss_pred CCCcEEEEEEec---------CCEEEEEECCe
Confidence 478999999875 45788999984
No 417
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=26.60 E-value=18 Score=32.05 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=20.2
Q ss_pred cCCCccccCCCCCcce---EEEEeecCC
Q psy13769 49 VLPTHWRSNKSLPIAF---KVVVLDDVM 73 (155)
Q Consensus 49 ~LP~HWRsNKtLP~~F---kVvaL~~Vp 73 (155)
-.|+||||.+||...+ +|.++..|-
T Consensus 83 ~~~s~~~~~~~l~~~l~~~~i~gi~gvD 110 (358)
T TIGR01368 83 DRYSNWRATESLDQFLKRHGIPGIYGVD 110 (358)
T ss_pred CCCCcccccCCHHHHHHHCCCceEeCCc
Confidence 4699999999998766 588887663
No 418
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=26.53 E-value=1.3e+02 Score=21.21 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=22.1
Q ss_pred cCCCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 115 SGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 115 SGRGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
=-||+.++++|+..+.........--+.+.+.|
T Consensus 28 ~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g 60 (134)
T PF02221_consen 28 LKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGG 60 (134)
T ss_dssp EETTSEEEEEEEEEECSSBBSSEEEEEEEEETT
T ss_pred ccCCCEEEEEEEEEEccccccCCEEEEEEEECC
Confidence 357999999998877666555554445555555
No 419
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=26.48 E-value=25 Score=32.30 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=15.9
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|+||+|||=-|.|---..+|
T Consensus 32 v~LvG~NGsGKSTLLriiaG~~~p 55 (635)
T PRK11147 32 VCLVGRNGAGKSTLMKILNGEVLL 55 (635)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCC
Confidence 457899999998655543333344
No 420
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=26.37 E-value=26 Score=27.31 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=21.4
Q ss_pred hhcchhhhhhhccccccc-ceeeeeccCCCceeEEE
Q psy13769 90 GELRNCTAVVKNQVAKFN-DLRFVGRSGRGKSFTLS 124 (155)
Q Consensus 90 aELRN~tavmknqvA~FN-DLRFvGRSGRGKsftlt 124 (155)
++.+-+...+...+..-. -+=++|.+|.|||..+.
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 334445555554443322 36689999999996544
No 421
>PRK06526 transposase; Provisional
Probab=26.35 E-value=29 Score=28.76 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=14.8
Q ss_pred cccceeeeeccCCCceeE
Q psy13769 105 KFNDLRFVGRSGRGKSFT 122 (155)
Q Consensus 105 ~FNDLRFvGRSGRGKsft 122 (155)
+...|=|+|.+|.||++.
T Consensus 97 ~~~nlll~Gp~GtGKThL 114 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHL 114 (254)
T ss_pred cCceEEEEeCCCCchHHH
Confidence 345689999999999964
No 422
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=26.30 E-value=26 Score=30.96 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=15.3
Q ss_pred eeeeccCCCceeEEEEEEecCCce
Q psy13769 110 RFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 110 RFvGRSGRGKsftltItv~t~Ppq 133 (155)
=++|.||+|||=-|.+-.-..||.
T Consensus 314 ~l~G~NGsGKSTLl~~l~Gl~~p~ 337 (520)
T TIGR03269 314 GIVGTSGAGKTTLSKIIAGVLEPT 337 (520)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCC
Confidence 347899999985554444444443
No 423
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=26.25 E-value=27 Score=26.14 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 20 i~ivG~~~~GKT 31 (184)
T smart00178 20 ILFLGLDNAGKT 31 (184)
T ss_pred EEEECCCCCCHH
Confidence 569999999996
No 424
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=26.09 E-value=26 Score=30.50 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=17.1
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||.|||=.|.+----.+|.
T Consensus 34 ~~llGpsGsGKSTLLr~iaGl~~p~ 58 (362)
T TIGR03258 34 LALIGKSGCGKTTLLRAIAGFVKAA 58 (362)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4578999999986655544444554
No 425
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=26.08 E-value=27 Score=26.79 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=14.2
Q ss_pred eeeeeccCCCceeEEEEEEec
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGS 129 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t 129 (155)
+-.+|.||.|||=-+.+-.--
T Consensus 38 ~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 38 TAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 446899999999554443333
No 426
>PRK09183 transposase/IS protein; Provisional
Probab=26.07 E-value=25 Score=28.98 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=21.9
Q ss_pred cCCCccchhcchhhhhhhcccccccceeeeeccCCCceeE
Q psy13769 83 GNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFT 122 (155)
Q Consensus 83 GNDEn~~aELRN~tavmknqvA~FNDLRFvGRSGRGKsft 122 (155)
|.++.-..+|+++.- +.+-..+-++|-+|.|||+-
T Consensus 84 ~~~~~~i~~L~~~~~-----i~~~~~v~l~Gp~GtGKThL 118 (259)
T PRK09183 84 GAPQKQLQSLRSLSF-----IERNENIVLLGPSGVGKTHL 118 (259)
T ss_pred CCCHHHHHHHhcCCc-----hhcCCeEEEEeCCCCCHHHH
Confidence 334444455555432 33335688999999999963
No 427
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=26.02 E-value=26 Score=31.43 Aligned_cols=14 Identities=43% Similarity=0.508 Sum_probs=11.6
Q ss_pred ceeeeeccCCCcee
Q psy13769 108 DLRFVGRSGRGKSF 121 (155)
Q Consensus 108 DLRFvGRSGRGKsf 121 (155)
=.=.||.||.|||=
T Consensus 370 ~~aivG~sGsGKST 383 (555)
T TIGR01194 370 IVFIVGENGCGKST 383 (555)
T ss_pred EEEEECCCCCCHHH
Confidence 45679999999983
No 428
>PRK00153 hypothetical protein; Validated
Probab=25.91 E-value=47 Score=24.15 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=15.7
Q ss_pred hhhcccccccceeeeeccCCC
Q psy13769 98 VVKNQVAKFNDLRFVGRSGRG 118 (155)
Q Consensus 98 vmknqvA~FNDLRFvGRSGRG 118 (155)
.|++--+++..++|-|.||-|
T Consensus 18 ~~~~~q~~l~~~~~~~~s~~G 38 (104)
T PRK00153 18 KMQKMQEELAQMEVEGEAGGG 38 (104)
T ss_pred HHHHHHHHHhccEEEEEECCC
Confidence 344444677899999999977
No 429
>PF06519 TolA: TolA C-terminal; InterPro: IPR014161 TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cut-offs are based largely on conserved operon structure. The Tol-Pal complex is required for maintaining outer membrane integrity, and is also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins OmpC, PhoE and LamB.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2X9A_D 3QDP_A 3QDR_A 1TOL_A 1S62_A.
Probab=25.88 E-value=31 Score=25.32 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=20.0
Q ss_pred ecCCCCeEEEEe-ecCCCccchhcchhhh
Q psy13769 70 DDVMDGTIVTIR-AGNDDNYCGELRNCTA 97 (155)
Q Consensus 70 ~~VpDGT~Vtv~-AGNDEn~~aELRN~ta 97 (155)
.=-|||++..|. -+.|+..|....++.+
T Consensus 44 ~l~~dG~v~~v~~~~GD~~lC~aa~~Ai~ 72 (96)
T PF06519_consen 44 RLAPDGLVLSVTVESGDPALCRAAKSAIA 72 (96)
T ss_dssp EEETTSEEEEEEEEEE-HHHHHHHHHH-H
T ss_pred EECCCCcEEEeeecCCCHHHHHHHHHHHH
Confidence 346899987775 4459999998888854
No 430
>PRK10738 hypothetical protein; Provisional
Probab=25.87 E-value=55 Score=24.82 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=17.4
Q ss_pred ccccccceeeeeccCCCceeEEE
Q psy13769 102 QVAKFNDLRFVGRSGRGKSFTLS 124 (155)
Q Consensus 102 qvA~FNDLRFvGRSGRGKsftlt 124 (155)
.+-.-.|++|.|++.+|..+.+.
T Consensus 4 ~~~w~~~~~f~~~~~~g~~i~~D 26 (134)
T PRK10738 4 RVKWVEGLTFLGESASGHQILMD 26 (134)
T ss_pred EEEEeCCcEEEEEcCCCCEEEEc
Confidence 33344689999999999877664
No 431
>PRK00889 adenylylsulfate kinase; Provisional
Probab=25.84 E-value=27 Score=25.92 Aligned_cols=13 Identities=46% Similarity=0.741 Sum_probs=10.3
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=|+|-+|.|||-
T Consensus 7 i~~~G~~GsGKST 19 (175)
T PRK00889 7 VWFTGLSGAGKTT 19 (175)
T ss_pred EEEECCCCCCHHH
Confidence 3478999999985
No 432
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=25.78 E-value=27 Score=31.02 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=16.4
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=.+|.||.|||=-|.+-.-..+|.
T Consensus 40 ~~liG~NGsGKSTLl~~l~Gl~~p~ 64 (510)
T PRK15439 40 HALLGGNGAGKSTLMKIIAGIVPPD 64 (510)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3468999999986555444444443
No 433
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=25.75 E-value=27 Score=30.00 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=16.1
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.+|.|||=.|.+-.---+|
T Consensus 70 ~gLlGpNGaGKSTLl~~L~Gl~~p 93 (340)
T PRK13536 70 FGLLGPNGAGKSTIARMILGMTSP 93 (340)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCC
Confidence 457899999999655544443344
No 434
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=25.61 E-value=24 Score=25.86 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=10.5
Q ss_pred eeeeccCCCceeE
Q psy13769 110 RFVGRSGRGKSFT 122 (155)
Q Consensus 110 RFvGRSGRGKsft 122 (155)
=|.|++|.|||+.
T Consensus 3 ~~~GkgG~GKTt~ 15 (116)
T cd02034 3 AITGKGGVGKTTI 15 (116)
T ss_pred EEECCCCCCHHHH
Confidence 3789999999863
No 435
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=25.58 E-value=26 Score=31.02 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=16.9
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+-++|.||.|||=-|.+-.--.+|.
T Consensus 53 ~~I~G~nGsGKSTLlr~L~Gl~~p~ 77 (382)
T TIGR03415 53 CVLMGLSGSGKSSLLRAVNGLNPVS 77 (382)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC
Confidence 4568999999996555444444553
No 436
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=25.57 E-value=27 Score=27.34 Aligned_cols=15 Identities=47% Similarity=0.829 Sum_probs=12.7
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
|-|-|=||.||+|.-
T Consensus 56 lSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVS 70 (127)
T ss_pred EEeecCCCCcHHHHH
Confidence 669999999999853
No 437
>COG1162 Predicted GTPases [General function prediction only]
Probab=25.54 E-value=26 Score=30.95 Aligned_cols=12 Identities=50% Similarity=0.761 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
.=|+|-||-|||
T Consensus 167 svl~GqSGVGKS 178 (301)
T COG1162 167 TVLLGQSGVGKS 178 (301)
T ss_pred EEEECCCCCcHH
Confidence 358999999998
No 438
>COG3168 PilP Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.43 E-value=61 Score=27.11 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=17.0
Q ss_pred EEEEeecCCCCeEEEEeecC
Q psy13769 65 KVVVLDDVMDGTIVTIRAGN 84 (155)
Q Consensus 65 kVvaL~~VpDGT~Vtv~AGN 84 (155)
++.|+-++|||+ ++|++|+
T Consensus 109 ~~~A~i~~~~~v-~~V~vG~ 127 (170)
T COG3168 109 GVSALIEAPGGV-YRVRVGQ 127 (170)
T ss_pred ceEEEEEcCCce-EEEeecc
Confidence 378899999999 9999996
No 439
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=25.33 E-value=27 Score=30.71 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=16.0
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||+|||=-|.+-.-..+|
T Consensus 33 ~~l~G~NGsGKSTLl~~l~G~~~p 56 (501)
T PRK10762 33 MALVGENGAGKSTMMKVLTGIYTR 56 (501)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 446899999999555444444444
No 440
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=25.30 E-value=28 Score=26.14 Aligned_cols=12 Identities=50% Similarity=0.783 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=+.|.||.|||
T Consensus 21 i~i~G~~GsGKs 32 (184)
T TIGR00455 21 IWLTGLSGSGKS 32 (184)
T ss_pred EEEECCCCCCHH
Confidence 567899999996
No 441
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=25.29 E-value=32 Score=26.23 Aligned_cols=17 Identities=41% Similarity=0.655 Sum_probs=12.1
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+-.+|.||.|||=-|.+
T Consensus 37 ~~i~G~nGsGKSTLl~~ 53 (207)
T cd03369 37 IGIVGRTGAGKSTLILA 53 (207)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44579999999854433
No 442
>KOG0057|consensus
Probab=25.25 E-value=28 Score=33.77 Aligned_cols=13 Identities=46% Similarity=0.815 Sum_probs=11.5
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
-+=+||+||+|||
T Consensus 380 kVaIvG~nGsGKS 392 (591)
T KOG0057|consen 380 KVAIVGSNGSGKS 392 (591)
T ss_pred EEEEECCCCCCHH
Confidence 4668999999998
No 443
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=25.25 E-value=28 Score=25.65 Aligned_cols=12 Identities=42% Similarity=0.603 Sum_probs=9.9
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 7 v~~vG~~~vGKT 18 (169)
T cd01892 7 CFVLGAKGSGKS 18 (169)
T ss_pred EEEECCCCCcHH
Confidence 347999999986
No 444
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.14 E-value=28 Score=25.96 Aligned_cols=15 Identities=53% Similarity=0.720 Sum_probs=11.0
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+-.+|.+|.|||=-+
T Consensus 31 ~~l~G~nGsGKstLl 45 (171)
T cd03228 31 VAIVGPSGSGKSTLL 45 (171)
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999997433
No 445
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=25.09 E-value=88 Score=25.48 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=28.2
Q ss_pred CCCCcceE----EEEeecCC-CCeE--EEEeecCCCccc-hhcch
Q psy13769 58 KSLPIAFK----VVVLDDVM-DGTI--VTIRAGNDDNYC-GELRN 94 (155)
Q Consensus 58 KtLP~~Fk----VvaL~~Vp-DGT~--Vtv~AGNDEn~~-aELRN 94 (155)
-.||..|+ ||+-|..- ||+. =+|.|.-||+|. .|+-.
T Consensus 97 GilPDlFrEG~gVVveG~~~~~g~F~A~evLAKhdekYmPpEv~~ 141 (159)
T PRK13150 97 GILPDLFREGQGVVVQGTLEKGNHVLAHEVLAKHDENYTPPEVEK 141 (159)
T ss_pred ccCCccccCCCeEEEEEEECCCCEEEEeEEEeCCCCCCCCHHHHH
Confidence 35888886 99999875 5665 379999999998 56443
No 446
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=25.08 E-value=61 Score=27.28 Aligned_cols=43 Identities=30% Similarity=0.303 Sum_probs=28.9
Q ss_pred EEeecCCCccc--------hhcc-hhhhhhhcccccccceeeeeccCCCcee
Q psy13769 79 TIRAGNDDNYC--------GELR-NCTAVVKNQVAKFNDLRFVGRSGRGKSF 121 (155)
Q Consensus 79 tv~AGNDEn~~--------aELR-N~tavmknqvA~FNDLRFvGRSGRGKsf 121 (155)
..--||-|++. ++++ |..-.++-+|-+++.||+.|=||..|.+
T Consensus 77 ~fi~GNHE~~~~l~~l~~gg~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~ 128 (262)
T cd00844 77 IFIGGNHEASNYLWELPYGGWVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSH 128 (262)
T ss_pred EEECCCCCCHHHHHhhcCCCeecCcEEEecCCCEEEECCeEEEEeccccccc
Confidence 45568888732 2222 2333456688889999999999977744
No 447
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=25.03 E-value=15 Score=32.41 Aligned_cols=48 Identities=21% Similarity=0.314 Sum_probs=31.2
Q ss_pred ecCCCccccCCCCCcce---EEEEeecCC----------CCeEE-EEeecCCCccchhcchh
Q psy13769 48 SVLPTHWRSNKSLPIAF---KVVVLDDVM----------DGTIV-TIRAGNDDNYCGELRNC 95 (155)
Q Consensus 48 s~LP~HWRsNKtLP~~F---kVvaL~~Vp----------DGT~V-tv~AGNDEn~~aELRN~ 95 (155)
+-.|+||||.+||...+ +|.++..|- .|++- .|..++|+...++++..
T Consensus 84 ~~~~s~~~~~~~l~~~l~~~~i~gi~giDTR~lt~~lR~~G~~~~~i~~~~~~~~~~~~~~~ 145 (354)
T PRK12838 84 SREGSHYRAKQSLDDFLKEWNIPGISGVDTRALVKHIREKGTMKASITTTDDAHAFDQIKAL 145 (354)
T ss_pred CCCCCcccccCCHHHHHHHCCCCcccCCCHHHHHHHHHHcCCceEEEecCCcHHHHHHHHhh
Confidence 45799999999998776 588776553 45553 34445555444555543
No 448
>PLN03118 Rab family protein; Provisional
Probab=24.93 E-value=28 Score=26.51 Aligned_cols=13 Identities=46% Similarity=0.718 Sum_probs=11.2
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=|+|.+|.|||=
T Consensus 17 v~ivG~~~vGKTs 29 (211)
T PLN03118 17 ILLIGDSGVGKSS 29 (211)
T ss_pred EEEECcCCCCHHH
Confidence 5699999999974
No 449
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=24.74 E-value=28 Score=32.95 Aligned_cols=16 Identities=50% Similarity=0.632 Sum_probs=13.5
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+=.+|.||.|||=-|.
T Consensus 35 v~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 35 LFLCGSSGDGKSEILA 50 (504)
T ss_pred EEEECCCCCCHHHHHh
Confidence 4468999999998887
No 450
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=24.72 E-value=44 Score=23.18 Aligned_cols=42 Identities=14% Similarity=0.514 Sum_probs=21.8
Q ss_pred CCCccchhcchhhhhhhcccccccceeeeecc-CCCceeEEEEEEe
Q psy13769 84 NDDNYCGELRNCTAVVKNQVAKFNDLRFVGRS-GRGKSFTLSIMVG 128 (155)
Q Consensus 84 NDEn~~aELRN~tavmknqvA~FNDLRFvGRS-GRGKsftltItv~ 128 (155)
|++.+-++++. ++.+.+..|.+..+-.|. --||...+||++.
T Consensus 19 ~~~~~~~~v~~---iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~ 61 (85)
T PF04359_consen 19 AEEDFVEAVKE---IVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVT 61 (85)
T ss_dssp -STTHHHHHCC---CCCCHSS--SSEEEEECCSTTSSEEEEEEEEE
T ss_pred CcHhHHHHHHH---HHHHhCCcCccCceEEecCCCCeEEEEEEEEE
Confidence 35556666543 445566677777777643 3355444444444
No 451
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=24.70 E-value=42 Score=29.41 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=19.2
Q ss_pred hhhcccccccceeeeeccCCCceeEE
Q psy13769 98 VVKNQVAKFNDLRFVGRSGRGKSFTL 123 (155)
Q Consensus 98 vmknqvA~FNDLRFvGRSGRGKsftl 123 (155)
+.++.-..||-|=+.|.+|.||+.-+
T Consensus 140 ~~~~~~~~~~~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 140 VAENPGKAYNPLFIYGGVGLGKTHLL 165 (450)
T ss_pred HHhCcCccCCeEEEECCCCCCHHHHH
Confidence 33443356788999999999998644
No 452
>PRK06547 hypothetical protein; Provisional
Probab=24.56 E-value=29 Score=27.00 Aligned_cols=11 Identities=55% Similarity=0.821 Sum_probs=8.8
Q ss_pred eeeccCCCcee
Q psy13769 111 FVGRSGRGKSF 121 (155)
Q Consensus 111 FvGRSGRGKsf 121 (155)
+.|.||+|||-
T Consensus 20 i~G~~GsGKTt 30 (172)
T PRK06547 20 IDGRSGSGKTT 30 (172)
T ss_pred EECCCCCCHHH
Confidence 44899999984
No 453
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=24.40 E-value=2.1e+02 Score=18.60 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=43.1
Q ss_pred ecCCCccccCCCCCcceEEEEeecCC-CCeEEEEeecCCCccchhcchhhhhhhcccccccceeeeeccCCCceeEEEEE
Q psy13769 48 SVLPTHWRSNKSLPIAFKVVVLDDVM-DGTIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIM 126 (155)
Q Consensus 48 s~LP~HWRsNKtLP~~FkVvaL~~Vp-DGT~Vtv~AGNDEn~~aELRN~tavmknqvA~FNDLRFvGRSGRGKsftltIt 126 (155)
..-|.....++.+-..++|-=.|... .+..|.+..+++.. +-..|+.=..|++.+++++
T Consensus 9 ~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~--------------------~~~~i~~L~~g~~~~v~~~ 68 (101)
T PF07705_consen 9 TVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV--------------------STVTIPSLAPGESETVTFT 68 (101)
T ss_dssp EEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE--------------------EEEEESEB-TTEEEEEEEE
T ss_pred eeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee--------------------ccEEECCcCCCcEEEEEEE
Confidence 44556666667666666666666543 45566666655443 2222333345777766666
Q ss_pred EecCCceeeeeeeeeEEeeeCC
Q psy13769 127 VGSSPHQIASYNKAIKVTVDGP 148 (155)
Q Consensus 127 v~t~Ppqvaty~~AIKVTVDGP 148 (155)
+... +-..|. |++.+|..
T Consensus 69 ~~~~--~~G~~~--i~~~iD~~ 86 (101)
T PF07705_consen 69 WTPP--SPGSYT--IRVVIDPD 86 (101)
T ss_dssp EE-S--S-CEEE--EEEEESTT
T ss_pred EEeC--CCCeEE--EEEEEeeC
Confidence 6554 566776 89999853
No 454
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=24.32 E-value=29 Score=31.89 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=15.5
Q ss_pred eeeeccCCCceeEEEEEEecCCc
Q psy13769 110 RFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 110 RFvGRSGRGKsftltItv~t~Pp 132 (155)
=.+|.||+|||=-+.+-.--.+|
T Consensus 354 ~lvG~nGsGKSTLlk~i~Gl~~p 376 (623)
T PRK10261 354 SLVGESGSGKSTTGRALLRLVES 376 (623)
T ss_pred EEECCCCCCHHHHHHHHHcCCCC
Confidence 35899999998665554444444
No 455
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.30 E-value=30 Score=28.76 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=15.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCcee
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQI 134 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppqv 134 (155)
+=++|.+|+|||=-+.+-----+|+-
T Consensus 33 ~~i~G~nGsGKSTL~~~l~GLl~p~~ 58 (235)
T COG1122 33 VLLIGPNGSGKSTLLKLLNGLLKPTS 58 (235)
T ss_pred EEEECCCCCCHHHHHHHHcCcCcCCC
Confidence 45789999999844333333334433
No 456
>PRK13764 ATPase; Provisional
Probab=24.20 E-value=1.9e+02 Score=27.78 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=46.7
Q ss_pred cchhHHHHHHHHHhhhccc----eeecCCCcEEeecCCCccccCCCCCcceEEEEe-ecCCCCeEEEEeecCCCccchhc
Q psy13769 18 MTSDMFAGIHEALQEYHGE----LVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVL-DDVMDGTIVTIRAGNDDNYCGEL 92 (155)
Q Consensus 18 ~~~~~~~~~~~~l~~~~ge----lv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL-~~VpDGT~Vtv~AGNDEn~~aEL 92 (155)
++.+.+..+.+.+.+..+. ++.-+.|.. +. ..+..|+|-+. .++.+|..+++.--..--...+|
T Consensus 175 lt~~~l~~la~~i~~~~~~~~~~~~e~~~p~~-~~----------~~~~~~Rv~i~~~p~~~~~~itirrp~~~~~Le~l 243 (602)
T PRK13764 175 LTEEELEEIAREILERAKRDPDGFIEIERRGA-TV----------VQLGNYRIVIARPPFSDGIEITAVRPVVKLSLEDY 243 (602)
T ss_pred CCHHHHHHHHHHHHHHhcccccccceeecCcc-cc----------cCCCCEEEEEEccCccccEEEEEEccCCCCCHHHh
Confidence 5666777666666554431 222233311 11 22345676554 45667777775421211122333
Q ss_pred chhhhhhhcccccccceeeeeccCCCceeEE
Q psy13769 93 RNCTAVVKNQVAKFNDLRFVGRSGRGKSFTL 123 (155)
Q Consensus 93 RN~tavmknqvA~FNDLRFvGRSGRGKsftl 123 (155)
.-.-..++.-..+-.-+=+.|-+|+|||-++
T Consensus 244 ~l~~~l~~~l~~~~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 244 NLSEKLKERLEERAEGILIAGAPGAGKSTFA 274 (602)
T ss_pred CCCHHHHHHHHhcCCEEEEECCCCCCHHHHH
Confidence 3221222222222233779999999999655
No 457
>PRK06696 uridine kinase; Validated
Probab=24.08 E-value=27 Score=27.50 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=8.1
Q ss_pred eeccCCCcee
Q psy13769 112 VGRSGRGKSF 121 (155)
Q Consensus 112 vGRSGRGKsf 121 (155)
-|.||+|||-
T Consensus 28 ~G~sgsGKST 37 (223)
T PRK06696 28 DGITASGKTT 37 (223)
T ss_pred ECCCCCCHHH
Confidence 4799999974
No 458
>PF14756 Pdase_C33_assoc: Peptidase_C33-associated domain
Probab=23.99 E-value=44 Score=27.21 Aligned_cols=9 Identities=78% Similarity=1.125 Sum_probs=6.4
Q ss_pred CCCCCCCCC
Q psy13769 1 MHLPSSKSP 9 (155)
Q Consensus 1 mhl~~~~~~ 9 (155)
||||+..-|
T Consensus 23 mhlps~~ip 31 (147)
T PF14756_consen 23 MHLPSSVIP 31 (147)
T ss_pred hcCccchhH
Confidence 888877553
No 459
>PRK00131 aroK shikimate kinase; Reviewed
Probab=23.75 E-value=33 Score=24.53 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=9.1
Q ss_pred eeeeccCCCcee
Q psy13769 110 RFVGRSGRGKSF 121 (155)
Q Consensus 110 RFvGRSGRGKsf 121 (155)
=++|=+|+|||.
T Consensus 8 ~l~G~~GsGKst 19 (175)
T PRK00131 8 VLIGFMGAGKST 19 (175)
T ss_pred EEEcCCCCCHHH
Confidence 367888888874
No 460
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=23.72 E-value=1.7e+02 Score=20.85 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=12.3
Q ss_pred cCCCceeEEEEEEec
Q psy13769 115 SGRGKSFTLSIMVGS 129 (155)
Q Consensus 115 SGRGKsftltItv~t 129 (155)
++.+|+|+|+|+...
T Consensus 48 ~~~~ktFDl~v~~k~ 62 (95)
T PF08512_consen 48 SFSSKTFDLVVILKD 62 (95)
T ss_dssp SSSSSEEEEEEEETT
T ss_pred cCcceEEEEEEEEec
Confidence 677899999988865
No 461
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=23.69 E-value=1.2e+02 Score=25.17 Aligned_cols=84 Identities=21% Similarity=0.249 Sum_probs=43.2
Q ss_pred ceEEEEeecCCCCeEEEEeecCCCccchhcch------hhhhhhccccc-ccceeeeeccCCCceeEEEEEEecCCceee
Q psy13769 63 AFKVVVLDDVMDGTIVTIRAGNDDNYCGELRN------CTAVVKNQVAK-FNDLRFVGRSGRGKSFTLSIMVGSSPHQIA 135 (155)
Q Consensus 63 ~FkVvaL~~VpDGT~Vtv~AGNDEn~~aELRN------~tavmknqvA~-FNDLRFvGRSGRGKsftltItv~t~Ppqva 135 (155)
.|+ |+.-+..+|..|+++-=+++.....|-. ..+.++.-+.+ =.=+=|.|.+|+|||=++.--+.--++
T Consensus 31 ~~R-v~~~p~~~G~~~~iR~~~~~~~~~~l~~lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~--- 106 (264)
T cd01129 31 DLR-VSTLPTIYGESVVLRILDKKNQILDLEKLGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNT--- 106 (264)
T ss_pred EEE-EEEeecCCCCEEEEEEeCCccCCCCHHHcCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCC---
Confidence 455 4445566888898888766543222111 11112222221 112568999999999776533222221
Q ss_pred eeeeeeEEeeeCCCCCC
Q psy13769 136 SYNKAIKVTVDGPREPR 152 (155)
Q Consensus 136 ty~~AIKVTVDGPRePR 152 (155)
+.+ --+|++.|.|-.
T Consensus 107 -~~~-~iitiEdp~E~~ 121 (264)
T cd01129 107 -PEK-NIITVEDPVEYQ 121 (264)
T ss_pred -CCC-eEEEECCCceec
Confidence 122 236677666643
No 462
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=23.54 E-value=32 Score=26.76 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=12.8
Q ss_pred ccceeeeeccCCCcee
Q psy13769 106 FNDLRFVGRSGRGKSF 121 (155)
Q Consensus 106 FNDLRFvGRSGRGKsf 121 (155)
-..|=|.|-+|.||++
T Consensus 47 ~~~l~l~G~~G~GKTh 62 (178)
T PF01695_consen 47 GENLILYGPPGTGKTH 62 (178)
T ss_dssp --EEEEEESTTSSHHH
T ss_pred CeEEEEEhhHhHHHHH
Confidence 3469999999999986
No 463
>PF13175 AAA_15: AAA ATPase domain
Probab=23.52 E-value=33 Score=28.01 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=10.3
Q ss_pred eeeeccCCCcee
Q psy13769 110 RFVGRSGRGKSF 121 (155)
Q Consensus 110 RFvGRSGRGKsf 121 (155)
=+||+.|.|||=
T Consensus 26 iiiG~N~sGKT~ 37 (415)
T PF13175_consen 26 IIIGENNSGKTN 37 (415)
T ss_pred EEEccCCCCHHH
Confidence 389999999983
No 464
>PLN00223 ADP-ribosylation factor; Provisional
Probab=23.44 E-value=33 Score=25.89 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=10.9
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+-++|.+|.|||
T Consensus 20 i~ivG~~~~GKT 31 (181)
T PLN00223 20 ILMVGLDAAGKT 31 (181)
T ss_pred EEEECCCCCCHH
Confidence 779999999995
No 465
>PRK03881 hypothetical protein; Provisional
Probab=23.20 E-value=50 Score=29.81 Aligned_cols=70 Identities=23% Similarity=0.398 Sum_probs=44.7
Q ss_pred cCCCCeEEEEeecCCCccchhcchhhh------------hhhccc-ccccceeeeeccC-CCceeEEEEEEecCCceeee
Q psy13769 71 DVMDGTIVTIRAGNDDNYCGELRNCTA------------VVKNQV-AKFNDLRFVGRSG-RGKSFTLSIMVGSSPHQIAS 136 (155)
Q Consensus 71 ~VpDGT~Vtv~AGNDEn~~aELRN~ta------------vmknqv-A~FNDLRFvGRSG-RGKsftltItv~t~Ppqvat 136 (155)
..+-|+-||+.-+ .|||.|.- +.+|-+ |-|+|-||--=+= ==+..++.|+|.+.|-.+.
T Consensus 332 ~~~~g~FVTl~~~------g~LRGCIG~~~p~~~~L~~~v~~~a~~AA~~DpRF~pl~~~El~~l~i~VsvL~~~~~~~- 404 (467)
T PRK03881 332 NRRAGVFVSLKKD------GELRGCIGTIFPTRENIAEEIIRNAISAGTEDPRFPPVEEDELDDLVYSVDVLTEPEPVS- 404 (467)
T ss_pred CCcccEEEEEEEC------CeeeeeeeecCCCcchHHHHHHHHHHHHhcCCCCCCCCChHHhCCeEEEEEEcCCCeECC-
Confidence 4567899999752 57888742 444544 8899999942111 1167788889988877764
Q ss_pred eeeeeEEeeeC
Q psy13769 137 YNKAIKVTVDG 147 (155)
Q Consensus 137 y~~AIKVTVDG 147 (155)
+-..+.+-.||
T Consensus 405 ~~~~~~~g~~G 415 (467)
T PRK03881 405 SLDELDPKRYG 415 (467)
T ss_pred CHHHcCCccce
Confidence 33344444444
No 466
>PRK00089 era GTPase Era; Reviewed
Probab=23.17 E-value=32 Score=27.72 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|++|.|||
T Consensus 8 V~iiG~pn~GKS 19 (292)
T PRK00089 8 VAIVGRPNVGKS 19 (292)
T ss_pred EEEECCCCCCHH
Confidence 457999999997
No 467
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=23.09 E-value=76 Score=23.76 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHhhhccceee
Q psy13769 20 SDMFAGIHEALQEYHGELVQ 39 (155)
Q Consensus 20 ~~~~~~~~~~l~~~~gelv~ 39 (155)
++.+..|.+.+++|+|+.||
T Consensus 59 ~~Vl~el~~c~~~~p~~yVR 78 (99)
T PF00101_consen 59 AQVLAELEACLAEHPGEYVR 78 (99)
T ss_dssp HHHHHHHHHHHHHSTTSEEE
T ss_pred HHHHHHHHHHHHhCCCceEE
Confidence 45678999999999999887
No 468
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=22.99 E-value=33 Score=29.95 Aligned_cols=19 Identities=42% Similarity=0.548 Sum_probs=14.4
Q ss_pred ceeeeeccCCCceeEEEEE
Q psy13769 108 DLRFVGRSGRGKSFTLSIM 126 (155)
Q Consensus 108 DLRFvGRSGRGKsftltIt 126 (155)
-|=.||-||+|||..=.+.
T Consensus 41 ~~glVGESG~GKSTlgr~i 59 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLI 59 (268)
T ss_pred EEEEEecCCCCHHHHHHHH
Confidence 4678999999999754333
No 469
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=22.97 E-value=1e+02 Score=25.15 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=26.6
Q ss_pred CCCCcceE----EEEeecCC-CCeE--EEEeecCCCccch
Q psy13769 58 KSLPIAFK----VVVLDDVM-DGTI--VTIRAGNDDNYCG 90 (155)
Q Consensus 58 KtLP~~Fk----VvaL~~Vp-DGT~--Vtv~AGNDEn~~a 90 (155)
-.||..|+ ||+-|..- ||+. =+|.|.-||+|..
T Consensus 97 GilPDlFrEG~gVVveG~~~~~g~F~A~~vLAKhdekYmP 136 (160)
T PRK13165 97 GILPDLFREGQGIVAQGVLEEGNHIEAKEVLAKHDENYTP 136 (160)
T ss_pred ccCCccccCCCeEEEEEEECCCCeEEEEEEEecCCCCCCC
Confidence 47888887 99999874 5664 4799999999973
No 470
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=22.60 E-value=33 Score=30.09 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=16.3
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-|.+----.+|
T Consensus 43 ~~LlGpsGsGKSTLLr~IaGl~~p 66 (375)
T PRK09452 43 LTLLGPSGCGKTTVLRLIAGFETP 66 (375)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Confidence 456899999999665544444444
No 471
>COG4451 RbcS Ribulose bisphosphate carboxylase small subunit [Energy production and conversion]
Probab=22.58 E-value=71 Score=25.67 Aligned_cols=21 Identities=14% Similarity=0.389 Sum_probs=17.9
Q ss_pred chhHHHHHHHHHhhhccceee
Q psy13769 19 TSDMFAGIHEALQEYHGELVQ 39 (155)
Q Consensus 19 ~~~~~~~~~~~l~~~~gelv~ 39 (155)
..|.+..|.+.+++|+||.||
T Consensus 66 ~~evlaele~Cr~dhp~eYIR 86 (127)
T COG4451 66 AGEVLAELEACRADHPGEYIR 86 (127)
T ss_pred hHHHHHHHHHHHHhCCCCeEE
Confidence 446778999999999999886
No 472
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=22.36 E-value=37 Score=31.63 Aligned_cols=14 Identities=43% Similarity=0.584 Sum_probs=11.0
Q ss_pred eeeeccCCCceeEE
Q psy13769 110 RFVGRSGRGKSFTL 123 (155)
Q Consensus 110 RFvGRSGRGKsftl 123 (155)
=++|.+|+|||=-|
T Consensus 27 ~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 27 GIVGPNGCGKSNIV 40 (1179)
T ss_pred EEECCCCCChhHHH
Confidence 46899999998443
No 473
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=22.32 E-value=34 Score=30.15 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=15.4
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||.|||=-|.|-.--.||
T Consensus 33 ~~l~G~nGsGKSTLl~~l~Gl~~p 56 (501)
T PRK11288 33 HALMGENGAGKSTLLKILSGNYQP 56 (501)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 456899999999554443333344
No 474
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=22.32 E-value=31 Score=30.71 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=16.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCce
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppq 133 (155)
+=++|.||+|||=-|.+-.--.+|.
T Consensus 57 ~~LvG~NGsGKSTLLr~I~Gl~~p~ 81 (400)
T PRK10070 57 FVIMGLSGSGKSTMVRLLNRLIEPT 81 (400)
T ss_pred EEEECCCCchHHHHHHHHHcCCCCC
Confidence 3468999999986555544444443
No 475
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=22.25 E-value=31 Score=33.18 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=14.4
Q ss_pred ceeeeeccCCCceeEEE
Q psy13769 108 DLRFVGRSGRGKSFTLS 124 (155)
Q Consensus 108 DLRFvGRSGRGKsftlt 124 (155)
..-.+|.||+||||.+.
T Consensus 451 N~~I~G~sGsGKS~l~k 467 (844)
T PRK13721 451 NMAVCGTSGAGKTGLIQ 467 (844)
T ss_pred cEEEEcCCCCCHHHHHH
Confidence 36789999999999764
No 476
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.03 E-value=36 Score=27.72 Aligned_cols=10 Identities=40% Similarity=0.886 Sum_probs=8.8
Q ss_pred eeeccCCCce
Q psy13769 111 FVGRSGRGKS 120 (155)
Q Consensus 111 FvGRSGRGKs 120 (155)
++|.+|.|||
T Consensus 26 i~G~NGsGKS 35 (270)
T cd03242 26 LVGENAQGKT 35 (270)
T ss_pred EECCCCCCHH
Confidence 6899999986
No 477
>PLN03110 Rab GTPase; Provisional
Probab=22.02 E-value=35 Score=26.51 Aligned_cols=13 Identities=46% Similarity=0.808 Sum_probs=11.6
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
-+=++|.+|.|||
T Consensus 14 Ki~ivG~~~vGKS 26 (216)
T PLN03110 14 KIVLIGDSGVGKS 26 (216)
T ss_pred EEEEECCCCCCHH
Confidence 5678999999998
No 478
>PRK08233 hypothetical protein; Provisional
Probab=22.01 E-value=36 Score=24.74 Aligned_cols=10 Identities=40% Similarity=0.624 Sum_probs=8.4
Q ss_pred eeeccCCCce
Q psy13769 111 FVGRSGRGKS 120 (155)
Q Consensus 111 FvGRSGRGKs 120 (155)
+.|-||.|||
T Consensus 8 I~G~~GsGKt 17 (182)
T PRK08233 8 IAAVSGGGKT 17 (182)
T ss_pred EECCCCCCHH
Confidence 5688999987
No 479
>PRK01889 GTPase RsgA; Reviewed
Probab=22.00 E-value=41 Score=29.11 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=13.5
Q ss_pred cceeeeeccCCCceeEE
Q psy13769 107 NDLRFVGRSGRGKSFTL 123 (155)
Q Consensus 107 NDLRFvGRSGRGKsftl 123 (155)
.-+-|+|.||.|||--+
T Consensus 196 ~~~~lvG~sgvGKStLi 212 (356)
T PRK01889 196 KTVALLGSSGVGKSTLV 212 (356)
T ss_pred CEEEEECCCCccHHHHH
Confidence 35789999999998533
No 480
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=21.99 E-value=37 Score=30.47 Aligned_cols=11 Identities=55% Similarity=0.749 Sum_probs=9.4
Q ss_pred eeeeccCCCce
Q psy13769 110 RFVGRSGRGKS 120 (155)
Q Consensus 110 RFvGRSGRGKs 120 (155)
=+.|.||.|||
T Consensus 149 LItG~SG~GKS 159 (308)
T COG1493 149 LITGPSGAGKS 159 (308)
T ss_pred EEECCCCCCHh
Confidence 36789999999
No 481
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=21.90 E-value=34 Score=26.03 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=11.9
Q ss_pred ceeeeeccCCCceeEEE
Q psy13769 108 DLRFVGRSGRGKSFTLS 124 (155)
Q Consensus 108 DLRFvGRSGRGKsftlt 124 (155)
-+=..|.||.|||..|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 45678999999998764
No 482
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=21.77 E-value=1.7e+02 Score=20.16 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=15.4
Q ss_pred eEEEEeecCCCCeEEEEeec
Q psy13769 64 FKVVVLDDVMDGTIVTIRAG 83 (155)
Q Consensus 64 FkVvaL~~VpDGT~Vtv~AG 83 (155)
.-.+.|.++.|||.|++..-
T Consensus 92 ~~~~~~~~~~~gT~vt~~~~ 111 (145)
T cd08898 92 LVEFTLEPIAGGTLLTVTES 111 (145)
T ss_pred EEEEEEEecCCcEEEEEEEc
Confidence 34566778999999999753
No 483
>PRK12377 putative replication protein; Provisional
Probab=21.77 E-value=31 Score=28.84 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=14.6
Q ss_pred cccceeeeeccCCCceeE
Q psy13769 105 KFNDLRFVGRSGRGKSFT 122 (155)
Q Consensus 105 ~FNDLRFvGRSGRGKsft 122 (155)
.++-|=|.|-+|.||++-
T Consensus 100 ~~~~l~l~G~~GtGKThL 117 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHL 117 (248)
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 346688999999999863
No 484
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=21.72 E-value=30 Score=33.04 Aligned_cols=17 Identities=41% Similarity=0.626 Sum_probs=13.8
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
.-.+|.||.||||.+..
T Consensus 444 ~~I~G~tGsGKS~l~~~ 460 (811)
T PRK13873 444 TLVVGPTGAGKSVLLAL 460 (811)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44789999999997644
No 485
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=21.50 E-value=43 Score=24.65 Aligned_cols=13 Identities=23% Similarity=0.509 Sum_probs=11.2
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
-+-++|.+|.|||
T Consensus 11 kv~i~G~~~~GKT 23 (168)
T cd04149 11 RILMLGLDAAGKT 23 (168)
T ss_pred EEEEECcCCCCHH
Confidence 4679999999996
No 486
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=21.42 E-value=39 Score=22.67 Aligned_cols=9 Identities=44% Similarity=0.789 Sum_probs=6.9
Q ss_pred eeccCCCce
Q psy13769 112 VGRSGRGKS 120 (155)
Q Consensus 112 vGRSGRGKs 120 (155)
.|-+|.|||
T Consensus 4 ~G~~GsGKt 12 (129)
T PF13238_consen 4 SGIPGSGKT 12 (129)
T ss_dssp EESTTSSHH
T ss_pred ECCCCCCHH
Confidence 577888886
No 487
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=21.38 E-value=23 Score=32.44 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=19.9
Q ss_pred cCCCccccCCCCCcce---EEEEeecC
Q psy13769 49 VLPTHWRSNKSLPIAF---KVVVLDDV 72 (155)
Q Consensus 49 ~LP~HWRsNKtLP~~F---kVvaL~~V 72 (155)
..|+||||.+||..-+ +|.++..|
T Consensus 139 ~~~s~~~~~~sL~~~L~~~~ipgI~gi 165 (415)
T PLN02771 139 ISTSNWRCTKTLGDYLAERNIMGIYDV 165 (415)
T ss_pred CCCCcccccCCHHHHHHHcCCcceecC
Confidence 4699999999998776 58888766
No 488
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=21.14 E-value=35 Score=22.97 Aligned_cols=10 Identities=50% Similarity=0.876 Sum_probs=8.2
Q ss_pred eeeccCCCce
Q psy13769 111 FVGRSGRGKS 120 (155)
Q Consensus 111 FvGRSGRGKs 120 (155)
.+|-+|.|||
T Consensus 4 V~G~~g~GKT 13 (119)
T PF08477_consen 4 VLGDSGVGKT 13 (119)
T ss_dssp EECSTTSSHH
T ss_pred EECcCCCCHH
Confidence 4789999986
No 489
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=21.13 E-value=46 Score=21.49 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=10.9
Q ss_pred eeeeeccCCCceeE
Q psy13769 109 LRFVGRSGRGKSFT 122 (155)
Q Consensus 109 LRFvGRSGRGKsft 122 (155)
+.+.|-.|.||++.
T Consensus 3 ~~i~~~~G~GKT~~ 16 (144)
T cd00046 3 VLLAAPTGSGKTLA 16 (144)
T ss_pred EEEECCCCCchhHH
Confidence 45778899999754
No 490
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=21.05 E-value=21 Score=27.66 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=14.3
Q ss_pred cceeeeeccCCCceeEEE
Q psy13769 107 NDLRFVGRSGRGKSFTLS 124 (155)
Q Consensus 107 NDLRFvGRSGRGKsftlt 124 (155)
..+...|-.|+||+++|.
T Consensus 14 ~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 14 GPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp SEEEEEE-TTSSHHHHHH
T ss_pred CCEEEEeCCCCCchHHHH
Confidence 367888999999999875
No 491
>PRK09774 fec operon regulator FecR; Reviewed
Probab=20.96 E-value=1.4e+02 Score=25.29 Aligned_cols=15 Identities=20% Similarity=0.505 Sum_probs=12.1
Q ss_pred cCCCCeEEEEeecCC
Q psy13769 71 DVMDGTIVTIRAGND 85 (155)
Q Consensus 71 ~VpDGT~Vtv~AGND 85 (155)
..||||.|++.++--
T Consensus 122 ~L~DGS~v~Ln~~S~ 136 (319)
T PRK09774 122 RLEDGSLLTLNTQSA 136 (319)
T ss_pred EcCCCCEEEEcCCCe
Confidence 469999999987754
No 492
>TIGR01997 sufA_proteo FeS assembly scaffold SufA. This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria.
Probab=20.88 E-value=32 Score=24.81 Aligned_cols=18 Identities=39% Similarity=0.628 Sum_probs=12.6
Q ss_pred ccceeeeeccCCCceeEE
Q psy13769 106 FNDLRFVGRSGRGKSFTL 123 (155)
Q Consensus 106 FNDLRFvGRSGRGKsftl 123 (155)
|++-.-.+..|.|+||+|
T Consensus 90 ~~NPn~~~~CgCG~Sf~~ 107 (107)
T TIGR01997 90 FNNPNATSACGCGESFEL 107 (107)
T ss_pred EECCCCCCccCCCCCccC
Confidence 444444578899999975
No 493
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=20.82 E-value=1.3e+02 Score=21.81 Aligned_cols=14 Identities=36% Similarity=0.717 Sum_probs=11.0
Q ss_pred CCceeEEEEEEecC
Q psy13769 117 RGKSFTLSIMVGSS 130 (155)
Q Consensus 117 RGKsftltItv~t~ 130 (155)
.|+.|+|+|.+.-.
T Consensus 76 ~g~~F~l~i~~~~~ 89 (127)
T cd00070 76 PGQPFELTILVEED 89 (127)
T ss_pred CCCeEEEEEEEcCC
Confidence 58999999987543
No 494
>PRK02047 hypothetical protein; Provisional
Probab=20.78 E-value=36 Score=24.65 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=28.4
Q ss_pred CCCccchhcchhhhhhhcccccccceeeee-ccCCCceeEEEEEEe-cCCceeeeeee
Q psy13769 84 NDDNYCGELRNCTAVVKNQVAKFNDLRFVG-RSGRGKSFTLSIMVG-SSPHQIASYNK 139 (155)
Q Consensus 84 NDEn~~aELRN~tavmknqvA~FNDLRFvG-RSGRGKsftltItv~-t~Ppqvaty~~ 139 (155)
|++.+-+++. +++.+..-.|.+-.+-. .|.-||--.+||+|. ++.-|+-.+-+
T Consensus 25 ~~~~~~~~v~---~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~ 79 (91)
T PRK02047 25 AHPEFADTIF---KVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYR 79 (91)
T ss_pred CcHhHHHHHH---HHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHHHHH
Confidence 3344444433 44455555666766644 466677666666665 55555544333
No 495
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=20.67 E-value=39 Score=26.49 Aligned_cols=13 Identities=46% Similarity=0.733 Sum_probs=11.0
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=+||.+|.|||=
T Consensus 16 i~vvG~~gvGKTs 28 (219)
T PLN03071 16 LVIVGDGGTGKTT 28 (219)
T ss_pred EEEECcCCCCHHH
Confidence 5689999999973
No 496
>KOG0951|consensus
Probab=20.65 E-value=66 Score=34.62 Aligned_cols=84 Identities=19% Similarity=0.351 Sum_probs=51.4
Q ss_pred ecCCCcEEeecCCCccccCC-CCCcceEEEEeec--CCCCeEE-----EEeecCCCccchhcc--hhh-hhhhccccccc
Q psy13769 39 QTGSPTILCSVLPTHWRSNK-SLPIAFKVVVLDD--VMDGTIV-----TIRAGNDDNYCGELR--NCT-AVVKNQVAKFN 107 (155)
Q Consensus 39 ~T~sP~~lCs~LP~HWRsNK-tLP~~FkVvaL~~--VpDGT~V-----tv~AGNDEn~~aELR--N~t-avmknqvA~FN 107 (155)
-+.-|+++-.++-.||-|.. -||+.|+=++|.+ .|++-.. -++|=+..++..=.- |.+ .++-+.+-.=|
T Consensus 1080 ~~~pP~~fi~lvSd~wl~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~~~n~iqtqVf~~~y~~n 1159 (1674)
T KOG0951|consen 1080 FEPPPQYFIRLVSDRWLHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQDFNPIQTQVFTSLYNTN 1159 (1674)
T ss_pred CCCCCceEEEEeeccccCCCcccccchhhccCcccCCCCchhhhccccchhccCCcchhhhccccCCceEEEEeeeeccc
Confidence 34578888888888887655 5899999999864 5555432 333333333322111 211 11222233448
Q ss_pred ceeeee-ccCCCceeE
Q psy13769 108 DLRFVG-RSGRGKSFT 122 (155)
Q Consensus 108 DLRFvG-RSGRGKsft 122 (155)
|+=||| +.|.||.|-
T Consensus 1160 d~v~vga~~gsgkt~~ 1175 (1674)
T KOG0951|consen 1160 DNVLVGAPNGSGKTAC 1175 (1674)
T ss_pred ceEEEecCCCCchhHH
Confidence 999999 999999874
No 497
>PF13889 Chromosome_seg: Chromosome segregation during meiosis
Probab=20.63 E-value=1.5e+02 Score=20.62 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=23.2
Q ss_pred ceeeeeccCCCceeEEEEEE----ecCCceeeeeeeeeEEeeeCCCCCCC
Q psy13769 108 DLRFVGRSGRGKSFTLSIMV----GSSPHQIASYNKAIKVTVDGPREPRS 153 (155)
Q Consensus 108 DLRFvGRSGRGKsftltItv----~t~Ppqvaty~~AIKVTVDGPRePR~ 153 (155)
-|||. |-+.+.|-|.=.| .--.|...+- -+++.+|+|..||-
T Consensus 8 HLrf~--~~~~gr~YLh~dIRvvF~~r~~d~de~--~L~~~~~~P~nPry 53 (56)
T PF13889_consen 8 HLRFC--CPRSGRFYLHTDIRVVFARRSPDSDEG--ELRSETEYPSNPRY 53 (56)
T ss_pred EEEEe--cCCCCcEEEECCeEEEEeccCCCCCcc--EEEEEEeCCCCCCC
Confidence 36777 3345556554222 2222222221 67889999999974
No 498
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=20.61 E-value=40 Score=25.10 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+-|+|.+|.|||
T Consensus 6 v~~vG~~~~GKT 17 (183)
T cd04152 6 IVMLGLDSAGKT 17 (183)
T ss_pred EEEECCCCCCHH
Confidence 568999999986
No 499
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=20.35 E-value=41 Score=29.70 Aligned_cols=12 Identities=50% Similarity=0.722 Sum_probs=10.1
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=+.|.||.|||
T Consensus 149 vLi~G~SG~GKS 160 (308)
T PRK05428 149 VLITGESGIGKS 160 (308)
T ss_pred EEEEcCCCCCHH
Confidence 447899999998
No 500
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.34 E-value=51 Score=28.63 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=14.1
Q ss_pred ccccceeeeeccCCCceeE
Q psy13769 104 AKFNDLRFVGRSGRGKSFT 122 (155)
Q Consensus 104 A~FNDLRFvGRSGRGKsft 122 (155)
++-.-+-.||-||+|||--
T Consensus 34 ~~Ge~vaiVG~SGSGKSTL 52 (228)
T COG4181 34 KRGETVAIVGPSGSGKSTL 52 (228)
T ss_pred cCCceEEEEcCCCCcHHhH
Confidence 3344567899999999843
Done!