Query psy13769
Match_columns 155
No_of_seqs 88 out of 90
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 20:02:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13769.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13769hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1eaq_A RUNT-related transcript 100.0 1.9E-91 6.4E-96 545.6 9.7 133 23-155 3-135 (140)
2 2zhn_A Galectin-9; beta sandwi 86.7 1.8 6.1E-05 31.8 6.2 22 117-147 95-116 (148)
3 2oap_1 GSPE-2, type II secreti 85.7 0.52 1.8E-05 41.1 3.3 119 18-151 172-299 (511)
4 3nv1_A Galectin-9, galectin 9 80.4 6.2 0.00021 28.7 6.8 22 117-147 85-106 (138)
5 2yro_A Galectin-8; GAL-BIND le 72.7 10 0.00036 28.2 6.3 22 117-147 95-116 (155)
6 2gza_A Type IV secretion syste 71.8 2.8 9.6E-05 34.2 3.3 40 107-152 176-215 (361)
7 2d6m_A Galectin-9, lectin, gal 69.8 12 0.0004 27.9 6.1 77 60-147 15-117 (159)
8 4f9p_D 103.2 anti-BTN3A1 antib 69.0 3.1 0.00011 34.7 3.0 27 110-138 197-223 (254)
9 4gp7_A Metallophosphoesterase; 67.2 1.4 4.7E-05 31.6 0.4 16 109-124 12-27 (171)
10 1lvg_A Guanylate kinase, GMP k 63.9 1.7 5.7E-05 31.9 0.4 12 109-120 7-18 (198)
11 1znw_A Guanylate kinase, GMP k 63.3 1.7 6E-05 31.6 0.4 16 109-124 23-38 (207)
12 1pui_A ENGB, probable GTP-bind 63.1 1.9 6.5E-05 30.3 0.5 12 109-120 29-40 (210)
13 1z6g_A Guanylate kinase; struc 61.8 1.9 6.6E-05 32.2 0.4 15 109-123 26-40 (218)
14 3c8u_A Fructokinase; YP_612366 61.2 2.3 7.9E-05 31.0 0.7 13 109-121 25-37 (208)
15 4f9l_D 20.1 anti-BTN3A1 antibo 61.2 4 0.00014 34.1 2.2 28 110-139 61-88 (259)
16 3zsj_A Galectin-3; sugar bindi 60.7 27 0.00092 25.2 6.4 22 117-147 82-103 (138)
17 2kjq_A DNAA-related protein; s 60.7 5.2 0.00018 28.5 2.5 19 105-123 35-53 (149)
18 3tr0_A Guanylate kinase, GMP k 59.6 2.3 7.8E-05 30.0 0.4 13 109-121 10-22 (205)
19 1kgd_A CASK, peripheral plasma 59.3 2.3 7.8E-05 30.4 0.4 12 109-120 8-19 (180)
20 4a74_A DNA repair and recombin 58.9 2.5 8.5E-05 30.1 0.5 26 100-125 19-44 (231)
21 2pcj_A ABC transporter, lipopr 58.4 2.6 8.8E-05 32.1 0.6 17 109-125 33-49 (224)
22 3kta_A Chromosome segregation 56.9 2.8 9.6E-05 29.3 0.5 11 110-120 30-40 (182)
23 2j41_A Guanylate kinase; GMP, 56.1 2.8 9.7E-05 29.5 0.4 13 109-121 9-21 (207)
24 2pt7_A CAG-ALFA; ATPase, prote 55.9 38 0.0013 27.3 7.1 38 107-150 172-209 (330)
25 2wkk_A Galectin-2; sugar-bindi 55.8 25 0.00087 26.0 5.6 22 117-147 85-106 (150)
26 2gj8_A MNME, tRNA modification 55.4 3.1 0.00011 29.0 0.5 12 109-120 7-18 (172)
27 1zp6_A Hypothetical protein AT 54.9 3.2 0.00011 29.0 0.6 13 109-121 12-24 (191)
28 1x50_A Galectin-4; GAL-BIND le 54.9 26 0.00087 26.3 5.6 22 117-147 105-126 (164)
29 3asz_A Uridine kinase; cytidin 54.8 3.2 0.00011 29.7 0.5 13 109-121 9-21 (211)
30 4f4c_A Multidrug resistance pr 54.6 3.3 0.00011 39.8 0.7 13 108-120 1107-1119(1321)
31 1mv5_A LMRA, multidrug resista 54.6 3 0.0001 32.0 0.4 17 109-125 31-47 (243)
32 2wji_A Ferrous iron transport 53.9 3.2 0.00011 28.4 0.4 12 109-120 6-17 (165)
33 2ff7_A Alpha-hemolysin translo 53.6 3.2 0.00011 32.2 0.4 24 109-132 38-61 (247)
34 3tif_A Uncharacterized ABC tra 53.4 3.2 0.00011 31.8 0.4 24 109-132 34-57 (235)
35 1knq_A Gluconate kinase; ALFA/ 53.3 4.1 0.00014 28.3 0.8 13 109-121 11-23 (175)
36 3uie_A Adenylyl-sulfate kinase 53.2 3.3 0.00011 29.9 0.4 12 109-120 28-39 (200)
37 1kag_A SKI, shikimate kinase I 53.2 3.4 0.00012 28.4 0.4 13 109-121 7-19 (173)
38 2ehv_A Hypothetical protein PH 53.0 3.3 0.00011 29.8 0.4 22 102-123 26-47 (251)
39 2cbz_A Multidrug resistance-as 52.7 3.4 0.00011 31.8 0.4 13 109-121 34-46 (237)
40 2bme_A RAB4A, RAS-related prot 52.6 3.9 0.00013 27.8 0.6 13 108-120 12-24 (186)
41 1cke_A CK, MSSA, protein (cyti 52.3 3.5 0.00012 29.6 0.4 12 109-120 8-19 (227)
42 1g86_A Charcot-leyden crystal 52.1 11 0.00037 27.4 3.0 22 117-147 85-106 (142)
43 1tq4_A IIGP1, interferon-induc 50.6 4 0.00014 34.9 0.5 16 108-123 71-86 (413)
44 2wjg_A FEOB, ferrous iron tran 50.4 3.9 0.00013 28.0 0.4 12 109-120 10-21 (188)
45 1s96_A Guanylate kinase, GMP k 49.7 4.1 0.00014 31.1 0.4 24 109-132 19-42 (219)
46 2ixe_A Antigen peptide transpo 49.6 4 0.00014 32.2 0.4 17 109-125 48-64 (271)
47 2d2e_A SUFC protein; ABC-ATPas 49.6 4 0.00014 31.5 0.4 16 109-124 32-47 (250)
48 2npi_A Protein CLP1; CLP1-PCF1 49.6 3.7 0.00012 35.3 0.1 50 74-124 94-156 (460)
49 3lxx_A GTPase IMAP family memb 49.4 4.1 0.00014 30.0 0.4 12 109-120 32-43 (239)
50 1u0l_A Probable GTPase ENGC; p 49.3 4.1 0.00014 32.1 0.4 13 109-121 172-184 (301)
51 2onk_A Molybdate/tungstate ABC 49.1 4.2 0.00014 31.6 0.4 25 108-132 26-50 (240)
52 2ghi_A Transport protein; mult 49.1 4.1 0.00014 31.8 0.4 14 110-123 50-63 (260)
53 2pze_A Cystic fibrosis transme 48.9 4.2 0.00014 31.0 0.4 13 109-121 37-49 (229)
54 1b0u_A Histidine permease; ABC 48.6 4.3 0.00015 31.8 0.4 17 109-125 35-51 (262)
55 2olj_A Amino acid ABC transpor 48.4 4.3 0.00015 32.1 0.4 24 109-132 53-76 (263)
56 3b9c_A HSPC159; beta sandwich, 48.4 14 0.00048 27.0 3.2 22 117-147 92-113 (144)
57 1oix_A RAS-related protein RAB 48.4 4.6 0.00016 28.6 0.5 13 109-121 32-44 (191)
58 3ec2_A DNA replication protein 48.3 5.4 0.00018 28.0 0.8 33 91-123 18-55 (180)
59 1kao_A RAP2A; GTP-binding prot 48.1 4.5 0.00015 26.4 0.4 12 109-120 6-17 (167)
60 3jvv_A Twitching mobility prot 47.8 16 0.00055 30.2 3.7 60 64-125 81-142 (356)
61 2f9l_A RAB11B, member RAS onco 47.8 4.4 0.00015 28.6 0.3 13 109-121 8-20 (199)
62 1np6_A Molybdopterin-guanine d 47.7 4.6 0.00016 30.1 0.4 12 109-120 9-20 (174)
63 1ji0_A ABC transporter; ATP bi 47.5 4.5 0.00016 31.0 0.4 24 109-132 35-58 (240)
64 1g6h_A High-affinity branched- 47.5 4.5 0.00015 31.3 0.4 17 109-125 36-52 (257)
65 2w0m_A SSO2452; RECA, SSPF, un 47.5 4.6 0.00016 28.4 0.4 14 108-121 25-38 (235)
66 2v9p_A Replication protein E1; 47.3 4.6 0.00016 33.1 0.4 20 102-121 122-141 (305)
67 3b85_A Phosphate starvation-in 47.0 5.4 0.00018 30.3 0.7 28 109-137 25-52 (208)
68 2yz2_A Putative ABC transporte 46.8 4.7 0.00016 31.5 0.4 17 109-125 36-52 (266)
69 4g1u_C Hemin import ATP-bindin 46.7 4.9 0.00017 31.7 0.4 17 109-125 40-56 (266)
70 2ce2_X GTPase HRAS; signaling 46.6 5.2 0.00018 26.0 0.5 12 109-120 6-17 (166)
71 1z2a_A RAS-related protein RAB 46.5 4.9 0.00017 26.5 0.4 12 109-120 8-19 (168)
72 3lnc_A Guanylate kinase, GMP k 46.4 5.4 0.00019 29.3 0.6 17 109-125 30-46 (231)
73 4eun_A Thermoresistant glucoki 46.2 5.1 0.00017 28.9 0.4 13 109-121 32-44 (200)
74 1c1l_A Protein (congerin I); g 46.1 16 0.00056 26.4 3.2 22 117-147 84-105 (137)
75 1sgw_A Putative ABC transporte 46.0 5 0.00017 30.8 0.4 17 109-125 38-54 (214)
76 2cvh_A DNA repair and recombin 45.8 5.1 0.00017 28.3 0.4 13 109-121 23-35 (220)
77 3nh6_A ATP-binding cassette SU 45.6 2.9 0.0001 34.1 -1.0 16 108-123 82-97 (306)
78 2nq2_C Hypothetical ABC transp 45.5 5.2 0.00018 31.2 0.4 16 109-124 34-49 (253)
79 3gfo_A Cobalt import ATP-bindi 45.4 5.1 0.00018 31.9 0.4 24 109-132 37-60 (275)
80 2fu5_C RAS-related protein RAB 45.1 6.9 0.00024 26.6 0.9 16 108-123 10-25 (183)
81 2eyu_A Twitching motility prot 45.0 5.3 0.00018 31.3 0.4 17 109-125 28-44 (261)
82 2fn4_A P23, RAS-related protei 44.8 5.8 0.0002 26.5 0.5 12 109-120 12-23 (181)
83 2zu0_C Probable ATP-dependent 44.6 5.4 0.00018 31.3 0.4 14 109-122 49-62 (267)
84 3ap9_A Galectin-8; beta-sandwi 44.6 17 0.0006 26.7 3.2 22 117-147 99-120 (154)
85 1vpl_A ABC transporter, ATP-bi 44.6 5.4 0.00018 31.3 0.4 24 109-132 44-67 (256)
86 1u8z_A RAS-related protein RAL 44.5 5.5 0.00019 26.0 0.4 12 109-120 7-18 (168)
87 1a78_A Galectin-1; S-lectin, c 44.3 18 0.00062 26.0 3.1 22 117-147 82-103 (134)
88 2yv5_A YJEQ protein; hydrolase 44.2 5.4 0.00019 31.6 0.4 38 77-123 145-182 (302)
89 2ihy_A ABC transporter, ATP-bi 44.1 5.5 0.00019 31.7 0.4 24 109-132 50-73 (279)
90 3dui_A Beta-galactoside-bindin 44.1 18 0.00063 26.0 3.2 22 117-147 83-104 (135)
91 1ek0_A Protein (GTP-binding pr 44.1 5.6 0.00019 26.2 0.4 13 109-121 6-18 (170)
92 2qag_B Septin-6, protein NEDD5 44.1 6 0.00021 34.3 0.6 12 109-120 45-56 (427)
93 1c1y_A RAS-related protein RAP 44.0 5.6 0.00019 26.2 0.4 12 109-120 6-17 (167)
94 1w6n_A Galectin-1; carbohydrat 44.0 17 0.0006 26.1 3.0 22 117-147 81-102 (134)
95 1is3_A Congerin II; complex wi 43.8 18 0.0006 26.2 3.0 22 117-147 82-103 (135)
96 3zxf_A Galectin-7; sugar bindi 43.8 18 0.00061 26.1 3.0 22 117-147 85-106 (138)
97 2qi9_C Vitamin B12 import ATP- 43.7 5.6 0.00019 31.1 0.4 24 109-132 29-52 (249)
98 3tau_A Guanylate kinase, GMP k 43.7 5.8 0.0002 29.0 0.4 12 109-120 11-22 (208)
99 2qor_A Guanylate kinase; phosp 43.2 6 0.0002 28.6 0.4 17 104-120 10-26 (204)
100 1yjd_C TP44, T-cell-specific s 43.1 82 0.0028 23.0 6.6 64 64-143 35-100 (140)
101 2nzj_A GTP-binding protein REM 42.9 6 0.00021 26.4 0.4 12 109-120 7-18 (175)
102 2erx_A GTP-binding protein DI- 42.7 6.1 0.00021 26.0 0.4 12 109-120 6-17 (172)
103 2yl4_A ATP-binding cassette SU 42.3 6.9 0.00024 33.8 0.7 16 109-124 373-388 (595)
104 2bbw_A Adenylate kinase 4, AK4 42.2 6.2 0.00021 29.4 0.4 13 109-121 30-42 (246)
105 4dsu_A GTPase KRAS, isoform 2B 41.9 6.4 0.00022 26.6 0.4 12 109-120 7-18 (189)
106 1n0w_A DNA repair protein RAD5 41.8 6.4 0.00022 28.2 0.4 23 102-124 20-42 (243)
107 1hlc_A Human lectin; HET: GAL 41.7 15 0.00052 26.3 2.4 22 117-147 75-96 (129)
108 2wsu_A Putative fiber protein; 41.7 60 0.0021 27.0 6.3 14 117-130 112-125 (343)
109 3lxw_A GTPase IMAP family memb 41.6 6.2 0.00021 29.9 0.3 11 110-120 25-35 (247)
110 3lyw_A YBBR family protein; st 41.2 34 0.0012 24.1 4.1 33 118-150 2-36 (90)
111 1z08_A RAS-related protein RAB 41.2 6.8 0.00023 26.0 0.4 12 109-120 9-20 (170)
112 1cr0_A DNA primase/helicase; R 40.9 7 0.00024 29.8 0.5 13 110-122 39-51 (296)
113 2bbs_A Cystic fibrosis transme 40.7 7 0.00024 31.4 0.5 16 109-124 67-82 (290)
114 1rz3_A Hypothetical protein rb 40.6 7.2 0.00025 28.3 0.5 13 109-121 25-37 (201)
115 3ney_A 55 kDa erythrocyte memb 40.6 6.8 0.00023 30.2 0.4 12 109-120 22-33 (197)
116 1g16_A RAS-related protein SEC 40.5 7.4 0.00025 25.7 0.5 12 109-120 6-17 (170)
117 2pjz_A Hypothetical protein ST 40.4 6.8 0.00023 30.9 0.4 17 109-125 33-49 (263)
118 2qnr_A Septin-2, protein NEDD5 40.3 7.2 0.00024 30.9 0.5 11 110-120 22-32 (301)
119 1r2q_A RAS-related protein RAB 40.1 7.1 0.00024 25.7 0.4 12 109-120 9-20 (170)
120 1qhx_A CPT, protein (chloramph 39.9 7.1 0.00024 26.9 0.4 12 109-120 6-17 (178)
121 2y8e_A RAB-protein 6, GH09086P 39.9 7.6 0.00026 25.8 0.5 12 109-120 17-28 (179)
122 3qf4_B Uncharacterized ABC tra 39.9 7.9 0.00027 33.7 0.7 14 108-121 383-396 (598)
123 3b60_A Lipid A export ATP-bind 39.8 7.3 0.00025 33.6 0.5 18 108-125 371-388 (582)
124 2wsm_A Hydrogenase expression/ 39.7 7.8 0.00027 27.5 0.6 13 108-120 32-44 (221)
125 1rj9_A FTSY, signal recognitio 39.5 7.1 0.00024 31.5 0.4 15 109-123 105-119 (304)
126 3tw8_B RAS-related protein RAB 39.4 7.6 0.00026 25.9 0.4 12 109-120 12-23 (181)
127 1upt_A ARL1, ADP-ribosylation 39.3 7.4 0.00025 25.8 0.4 12 109-120 10-21 (171)
128 1wms_A RAB-9, RAB9, RAS-relate 39.1 7.5 0.00026 26.0 0.4 12 109-120 10-21 (177)
129 3con_A GTPase NRAS; structural 39.1 7.5 0.00026 26.7 0.4 12 109-120 24-35 (190)
130 2qt1_A Nicotinamide riboside k 38.9 7.9 0.00027 27.7 0.5 11 110-120 25-35 (207)
131 2g6b_A RAS-related protein RAB 38.8 7.6 0.00026 26.1 0.4 12 109-120 13-24 (180)
132 3tui_C Methionine import ATP-b 38.8 7.4 0.00025 33.0 0.4 24 109-132 57-80 (366)
133 2qag_C Septin-7; cell cycle, c 38.5 7.5 0.00026 33.1 0.4 12 110-121 35-46 (418)
134 1fzq_A ADP-ribosylation factor 38.2 8.3 0.00028 26.8 0.5 12 109-120 19-30 (181)
135 1lw7_A Transcriptional regulat 38.2 5.9 0.0002 31.7 -0.3 16 107-122 171-186 (365)
136 2w58_A DNAI, primosome compone 38.1 8.6 0.0003 27.2 0.6 16 107-122 55-70 (202)
137 1htw_A HI0065; nucleotide-bind 38.1 7.8 0.00027 28.2 0.4 14 109-122 36-49 (158)
138 1f6b_A SAR1; gtpases, N-termin 38.0 8.3 0.00028 27.4 0.5 12 109-120 28-39 (198)
139 3t5g_A GTP-binding protein RHE 37.9 8.5 0.00029 26.1 0.5 12 109-120 9-20 (181)
140 1mh1_A RAC1; GTP-binding, GTPa 37.9 8 0.00027 26.0 0.4 12 109-120 8-19 (186)
141 1svi_A GTP-binding protein YSX 37.8 8.8 0.0003 26.3 0.6 12 109-120 26-37 (195)
142 3t7h_A Ubiquitin-like modifier 37.8 78 0.0027 26.0 6.3 54 76-130 204-259 (291)
143 2vp4_A Deoxynucleoside kinase; 37.8 8.1 0.00028 28.7 0.4 12 109-120 23-34 (230)
144 3t61_A Gluconokinase; PSI-biol 37.7 8.2 0.00028 27.5 0.4 13 109-121 21-33 (202)
145 2hxs_A RAB-26, RAS-related pro 37.7 8.2 0.00028 25.9 0.4 12 109-120 9-20 (178)
146 3trf_A Shikimate kinase, SK; a 37.6 8.1 0.00028 26.9 0.4 12 109-120 8-19 (185)
147 3i8t_A Galectin-4; S-type lect 37.5 26 0.00087 26.4 3.2 22 117-147 109-130 (164)
148 1z0j_A RAB-22, RAS-related pro 37.5 8.2 0.00028 25.4 0.4 12 109-120 9-20 (170)
149 2jeo_A Uridine-cytidine kinase 37.4 8.1 0.00028 28.9 0.4 15 109-123 28-42 (245)
150 3b5x_A Lipid A export ATP-bind 37.2 8.2 0.00028 33.3 0.4 18 108-125 371-388 (582)
151 3ihw_A Centg3; RAS, centaurin, 37.2 8.5 0.00029 27.0 0.4 12 109-120 23-34 (184)
152 3qf4_A ABC transporter, ATP-bi 37.1 8.2 0.00028 33.5 0.4 15 108-122 371-385 (587)
153 3clv_A RAB5 protein, putative; 37.0 8.5 0.00029 25.9 0.4 12 109-120 10-21 (208)
154 1mky_A Probable GTP-binding pr 37.0 8.2 0.00028 31.9 0.4 11 110-120 184-194 (439)
155 1vg8_A RAS-related protein RAB 36.9 8.7 0.0003 26.6 0.4 13 108-120 10-22 (207)
156 3bc1_A RAS-related protein RAB 36.9 8.5 0.00029 25.9 0.4 12 109-120 14-25 (195)
157 2pez_A Bifunctional 3'-phospho 36.7 8.6 0.00029 26.9 0.4 13 109-121 8-20 (179)
158 1ky3_A GTP-binding protein YPT 36.7 8.6 0.00029 25.6 0.4 13 108-120 10-22 (182)
159 4a82_A Cystic fibrosis transme 36.6 8.4 0.00029 33.3 0.4 14 108-121 369-382 (578)
160 3vaa_A Shikimate kinase, SK; s 36.5 8.9 0.0003 27.6 0.4 13 108-120 27-39 (199)
161 1dqt_A CTLA4, cytotoxic T lymp 36.4 51 0.0017 21.3 4.1 29 111-141 66-94 (117)
162 1moz_A ARL1, ADP-ribosylation 36.4 9.2 0.00032 25.8 0.5 12 109-120 21-32 (183)
163 2rcn_A Probable GTPase ENGC; Y 36.1 8.7 0.0003 32.3 0.4 13 109-121 218-230 (358)
164 1g29_1 MALK, maltose transport 36.1 8.7 0.0003 32.1 0.4 24 109-132 32-55 (372)
165 1a9x_B Carbamoyl phosphate syn 35.9 6 0.00021 33.7 -0.6 25 49-73 86-113 (379)
166 3th5_A RAS-related C3 botulinu 42.1 7.7 0.00026 27.2 0.0 32 90-121 12-45 (204)
167 2yyz_A Sugar ABC transporter, 35.9 8.8 0.0003 32.1 0.4 24 109-132 32-55 (359)
168 4agr_A Galectin; sugar binding 35.8 32 0.0011 26.0 3.4 18 70-87 21-38 (146)
169 2oil_A CATX-8, RAS-related pro 35.8 8.9 0.0003 26.5 0.3 13 108-120 27-39 (193)
170 3t5d_A Septin-7; GTP-binding p 35.7 9.5 0.00033 29.1 0.5 12 109-120 11-22 (274)
171 3cbq_A GTP-binding protein REM 35.7 9.1 0.00031 27.2 0.4 12 109-120 26-37 (195)
172 3aez_A Pantothenate kinase; tr 35.7 9.1 0.00031 30.9 0.4 15 109-123 93-107 (312)
173 2ged_A SR-beta, signal recogni 35.4 9.3 0.00032 26.3 0.4 12 109-120 51-62 (193)
174 1z0f_A RAB14, member RAS oncog 35.2 9.4 0.00032 25.4 0.4 12 109-120 18-29 (179)
175 1ko7_A HPR kinase/phosphatase; 35.2 9.6 0.00033 31.8 0.5 12 109-120 147-158 (314)
176 2lkc_A Translation initiation 35.1 9.5 0.00033 25.5 0.4 12 109-120 11-22 (178)
177 3bwd_D RAC-like GTP-binding pr 35.1 9.5 0.00032 25.6 0.4 12 109-120 11-22 (182)
178 1yhp_A Ddcad-1, GP24, calcium- 35.0 33 0.0011 28.0 3.6 33 101-133 93-126 (212)
179 1z06_A RAS-related protein RAB 34.8 9.6 0.00033 26.3 0.4 12 109-120 23-34 (189)
180 1z47_A CYSA, putative ABC-tran 34.8 9.4 0.00032 32.0 0.4 23 110-132 45-67 (355)
181 2xtp_A GTPase IMAP family memb 34.8 10 0.00035 28.1 0.6 12 109-120 25-36 (260)
182 4e22_A Cytidylate kinase; P-lo 34.7 9.5 0.00033 29.0 0.4 12 109-120 30-41 (252)
183 1m2o_B GTP-binding protein SAR 34.7 10 0.00035 26.7 0.5 12 109-120 26-37 (190)
184 1e69_A Chromosome segregation 34.7 11 0.00039 29.6 0.8 12 109-120 27-38 (322)
185 2it1_A 362AA long hypothetical 34.6 9.5 0.00032 31.9 0.4 24 109-132 32-55 (362)
186 2a9k_A RAS-related protein RAL 34.6 9.7 0.00033 25.5 0.4 12 109-120 21-32 (187)
187 1v43_A Sugar-binding transport 34.6 9.5 0.00033 32.0 0.4 24 109-132 40-63 (372)
188 3kkq_A RAS-related protein M-R 34.5 9.8 0.00033 25.8 0.4 12 109-120 21-32 (183)
189 3oes_A GTPase rhebl1; small GT 34.5 10 0.00035 26.6 0.5 12 109-120 27-38 (201)
190 3t1o_A Gliding protein MGLA; G 34.3 9.9 0.00034 25.7 0.4 12 109-120 17-28 (198)
191 2qm8_A GTPase/ATPase; G protei 34.3 9.9 0.00034 30.7 0.4 13 109-121 58-70 (337)
192 3pqc_A Probable GTP-binding pr 34.2 11 0.00037 25.5 0.6 12 109-120 26-37 (195)
193 3gd7_A Fusion complex of cysti 34.0 10 0.00035 32.0 0.5 15 109-123 50-64 (390)
194 2rhm_A Putative kinase; P-loop 33.9 11 0.00037 26.1 0.5 12 109-120 8-19 (193)
195 4djt_A GTP-binding nuclear pro 33.8 10 0.00035 26.8 0.4 12 109-120 14-25 (218)
196 1sq5_A Pantothenate kinase; P- 33.7 11 0.00036 29.8 0.5 15 109-123 83-97 (308)
197 2aka_B Dynamin-1; fusion prote 33.7 11 0.00039 28.1 0.6 12 109-120 29-40 (299)
198 2efe_B Small GTP-binding prote 33.5 11 0.00037 25.4 0.4 12 109-120 15-26 (181)
199 3tqf_A HPR(Ser) kinase; transf 33.4 11 0.00038 29.9 0.5 12 109-120 19-30 (181)
200 1jbk_A CLPB protein; beta barr 33.2 16 0.00056 24.1 1.3 30 91-122 30-59 (195)
201 2gf0_A GTP-binding protein DI- 33.2 11 0.00039 25.8 0.5 12 109-120 11-22 (199)
202 4dix_A Plectin-related protein 33.2 18 0.00062 30.2 1.8 49 60-108 68-120 (230)
203 3szr_A Interferon-induced GTP- 32.8 9.2 0.00031 33.6 -0.0 14 109-122 48-61 (608)
204 3b9q_A Chloroplast SRP recepto 32.8 11 0.00037 30.3 0.4 15 109-123 103-117 (302)
205 3reg_A RHO-like small GTPase; 32.8 11 0.00037 26.1 0.4 12 109-120 26-37 (194)
206 3fvq_A Fe(3+) IONS import ATP- 32.5 11 0.00039 31.6 0.5 24 109-132 33-56 (359)
207 2iwr_A Centaurin gamma 1; ANK 32.5 9.1 0.00031 25.8 -0.1 12 109-120 10-21 (178)
208 2dr3_A UPF0273 protein PH0284; 32.5 12 0.0004 26.8 0.5 21 102-122 19-39 (247)
209 4bas_A ADP-ribosylation factor 32.4 11 0.00039 25.7 0.4 12 109-120 20-31 (199)
210 2qu8_A Putative nucleolar GTP- 32.3 11 0.00038 27.3 0.4 12 109-120 32-43 (228)
211 2bov_A RAla, RAS-related prote 32.2 11 0.00038 25.9 0.4 12 109-120 17-28 (206)
212 2yvu_A Probable adenylyl-sulfa 32.2 11 0.00038 26.4 0.4 13 109-121 16-28 (186)
213 1f2t_A RAD50 ABC-ATPase; DNA d 32.2 11 0.00038 26.7 0.4 11 110-120 27-37 (149)
214 1m7b_A RND3/RHOE small GTP-bin 32.0 12 0.00041 25.8 0.5 12 109-120 10-21 (184)
215 3h2y_A GTPase family protein; 32.0 21 0.00073 29.2 2.1 40 76-120 135-174 (368)
216 2gco_A H9, RHO-related GTP-bin 31.9 12 0.00041 26.3 0.5 29 89-120 11-39 (201)
217 2yc2_C IFT27, small RAB-relate 31.8 11 0.00036 26.0 0.2 14 109-122 23-36 (208)
218 4aby_A DNA repair protein RECN 31.8 4.9 0.00017 32.0 -1.8 14 110-123 64-77 (415)
219 3ksp_A Calcium/calmodulin-depe 31.8 7.3 0.00025 28.3 -0.7 29 87-117 18-46 (129)
220 2e6j_A Hydin protein; PAPD, st 31.7 52 0.0018 21.6 3.6 33 117-151 68-100 (112)
221 3llu_A RAS-related GTP-binding 31.5 12 0.00042 26.2 0.5 12 109-120 23-34 (196)
222 4gzl_A RAS-related C3 botulinu 31.5 12 0.00042 26.5 0.5 25 96-120 18-44 (204)
223 2hf9_A Probable hydrogenase ni 31.4 12 0.00043 26.6 0.5 12 109-120 41-52 (226)
224 2il1_A RAB12; G-protein, GDP, 31.3 12 0.0004 26.2 0.4 12 109-120 29-40 (192)
225 1uf3_A Hypothetical protein TT 31.2 40 0.0014 23.6 3.1 41 76-116 64-115 (228)
226 2fv8_A H6, RHO-related GTP-bin 31.0 13 0.00044 26.3 0.5 12 109-120 28-39 (207)
227 2h57_A ADP-ribosylation factor 31.0 13 0.00044 25.6 0.5 12 109-120 24-35 (190)
228 2cjw_A GTP-binding protein GEM 30.9 12 0.00041 26.5 0.4 12 109-120 9-20 (192)
229 3iij_A Coilin-interacting nucl 30.8 12 0.00042 26.0 0.4 14 108-121 13-26 (180)
230 3ux8_A Excinuclease ABC, A sub 30.8 12 0.00041 32.8 0.4 14 110-123 352-365 (670)
231 3l0i_B RAS-related protein RAB 30.8 15 0.0005 25.7 0.8 12 109-120 36-47 (199)
232 3rlf_A Maltose/maltodextrin im 30.8 12 0.00041 31.8 0.4 24 109-132 32-55 (381)
233 3cm0_A Adenylate kinase; ATP-b 30.2 13 0.00044 25.7 0.4 12 109-120 7-18 (186)
234 1ega_A Protein (GTP-binding pr 30.2 13 0.00043 29.3 0.4 12 109-120 11-22 (301)
235 3vx6_A E1; 2.60A {Kluyveromyce 30.2 85 0.0029 25.8 5.4 52 76-129 198-251 (283)
236 1rwu_A Hypothetical UPF0250 pr 30.1 25 0.00085 25.5 1.9 52 85-141 46-99 (109)
237 2bcg_Y Protein YP2, GTP-bindin 30.0 14 0.00046 25.9 0.5 12 109-120 11-22 (206)
238 1w1w_A Structural maintenance 29.9 13 0.00043 30.5 0.4 11 110-120 30-40 (430)
239 2ewv_A Twitching motility prot 29.9 13 0.00044 30.6 0.4 61 63-125 93-155 (372)
240 1nlf_A Regulatory protein REPA 29.8 14 0.00046 28.1 0.5 13 110-122 34-46 (279)
241 3c5c_A RAS-like protein 12; GD 29.8 13 0.00045 25.9 0.4 12 109-120 24-35 (187)
242 3tkl_A RAS-related protein RAB 29.8 13 0.00045 25.4 0.4 12 109-120 19-30 (196)
243 1nrj_B SR-beta, signal recogni 29.8 13 0.00044 26.2 0.4 12 109-120 15-26 (218)
244 2a5j_A RAS-related protein RAB 29.7 13 0.00044 25.8 0.3 12 109-120 24-35 (191)
245 2h17_A ADP-ribosylation factor 29.6 14 0.00047 25.4 0.5 12 109-120 24-35 (181)
246 1zbd_A Rabphilin-3A; G protein 29.6 13 0.00045 25.8 0.4 12 109-120 11-22 (203)
247 2p65_A Hypothetical protein PF 29.6 16 0.00054 24.4 0.8 30 91-122 30-59 (187)
248 3dz8_A RAS-related protein RAB 29.5 14 0.00048 25.6 0.5 12 109-120 26-37 (191)
249 2x77_A ADP-ribosylation factor 29.5 14 0.00048 25.3 0.5 12 109-120 25-36 (189)
250 1p9r_A General secretion pathw 29.5 24 0.00082 29.9 2.0 76 50-126 102-187 (418)
251 3cph_A RAS-related protein SEC 29.4 13 0.00045 25.8 0.4 12 109-120 23-34 (213)
252 3d31_A Sulfate/molybdate ABC t 29.3 7.9 0.00027 32.2 -1.0 24 109-132 29-52 (348)
253 1kht_A Adenylate kinase; phosp 29.1 14 0.00048 25.3 0.4 12 109-120 6-17 (192)
254 1t9h_A YLOQ, probable GTPase E 29.0 5.9 0.0002 32.5 -1.8 13 108-120 175-187 (307)
255 4dcu_A GTP-binding protein ENG 29.0 14 0.00046 30.7 0.4 12 109-120 26-37 (456)
256 2ew1_A RAS-related protein RAB 28.9 15 0.0005 26.5 0.5 13 108-120 28-40 (201)
257 1zj6_A ADP-ribosylation factor 28.9 15 0.0005 25.3 0.5 12 109-120 19-30 (187)
258 2q3h_A RAS homolog gene family 28.8 14 0.00047 25.6 0.4 13 108-120 22-34 (201)
259 2atx_A Small GTP binding prote 28.8 15 0.00051 25.3 0.5 13 108-120 20-32 (194)
260 3pic_A CIP2; alpha/beta hydrol 28.6 9.2 0.00031 33.1 -0.7 27 47-79 11-39 (375)
261 1uf9_A TT1252 protein; P-loop, 28.2 18 0.00061 25.2 0.9 12 109-120 11-22 (203)
262 3gj0_A GTP-binding nuclear pro 28.0 16 0.00053 26.1 0.5 12 109-120 18-29 (221)
263 1ixz_A ATP-dependent metallopr 28.0 15 0.0005 27.2 0.4 34 89-123 25-66 (254)
264 2o52_A RAS-related protein RAB 28.0 15 0.00053 25.8 0.5 13 108-120 27-39 (200)
265 1knx_A Probable HPR(Ser) kinas 27.9 15 0.00052 30.6 0.5 12 109-120 150-161 (312)
266 1h65_A Chloroplast outer envel 27.9 15 0.00052 27.8 0.5 11 110-120 43-53 (270)
267 2j1l_A RHO-related GTP-binding 27.9 16 0.00053 26.2 0.5 12 109-120 37-48 (214)
268 1ksh_A ARF-like protein 2; sma 27.8 15 0.00051 25.0 0.4 12 109-120 21-32 (186)
269 3e70_C DPA, signal recognition 27.6 15 0.0005 30.1 0.4 14 109-122 132-145 (328)
270 2fg5_A RAB-22B, RAS-related pr 27.6 16 0.00055 25.4 0.5 13 108-120 25-37 (192)
271 4f4c_A Multidrug resistance pr 27.3 16 0.00054 35.2 0.6 13 109-121 447-459 (1321)
272 2atv_A RERG, RAS-like estrogen 27.3 15 0.00052 25.5 0.4 12 109-120 31-42 (196)
273 3g5u_A MCG1178, multidrug resi 27.2 15 0.00051 35.2 0.4 14 108-121 418-431 (1284)
274 1j6q_A Cytochrome C maturation 27.2 48 0.0016 25.0 3.1 34 57-90 72-112 (136)
275 1x3s_A RAS-related protein RAB 26.8 16 0.00054 24.8 0.4 13 108-120 17-29 (195)
276 3ux8_A Excinuclease ABC, A sub 26.5 16 0.00054 32.0 0.4 14 109-122 47-60 (670)
277 1wf3_A GTP-binding protein; GT 26.3 16 0.00055 29.0 0.4 12 109-120 10-21 (301)
278 1yqt_A RNAse L inhibitor; ATP- 26.3 16 0.00055 31.7 0.4 17 109-125 50-66 (538)
279 3t34_A Dynamin-related protein 26.2 17 0.00057 28.9 0.4 13 108-120 36-48 (360)
280 2fh5_B SR-beta, signal recogni 26.2 16 0.00056 25.6 0.4 12 109-120 10-21 (214)
281 1vht_A Dephospho-COA kinase; s 25.7 17 0.00059 26.1 0.4 13 109-121 7-19 (218)
282 2yh5_A DAPX protein, BAMC; lip 25.6 61 0.0021 23.6 3.4 49 58-106 71-120 (127)
283 1jwy_B Dynamin A GTPase domain 25.3 19 0.00064 27.3 0.5 12 109-120 27-38 (315)
284 1oxx_K GLCV, glucose, ABC tran 25.2 8.2 0.00028 32.0 -1.6 23 110-132 35-57 (353)
285 2h9z_A Hypothetical protein HP 25.1 11 0.00038 25.9 -0.7 30 112-141 46-76 (86)
286 3vkl_A Galectin-8; beta-sandwi 25.0 57 0.002 26.4 3.4 14 117-130 99-112 (291)
287 2p5t_B PEZT; postsegregational 24.9 16 0.00055 27.5 0.1 13 109-121 35-47 (253)
288 3bwu_F Protein FIMF; usher, N- 24.9 86 0.0029 21.5 3.9 32 113-150 29-60 (142)
289 3euj_A Chromosome partition pr 24.7 18 0.00061 31.8 0.4 16 108-123 31-46 (483)
290 1gwn_A RHO-related GTP-binding 24.6 20 0.00068 25.8 0.6 13 108-120 30-42 (205)
291 3nwj_A ATSK2; P loop, shikimat 24.6 19 0.00063 28.3 0.4 13 108-120 50-62 (250)
292 1via_A Shikimate kinase; struc 24.5 19 0.00065 25.0 0.4 12 109-120 7-18 (175)
293 2f7s_A C25KG, RAS-related prot 24.5 18 0.00062 25.4 0.3 13 108-120 27-39 (217)
294 1zd9_A ADP-ribosylation factor 24.5 18 0.00063 25.0 0.4 12 109-120 25-36 (188)
295 4ag6_A VIRB4 ATPase, type IV s 24.4 16 0.00055 29.2 0.0 18 108-125 37-54 (392)
296 3qks_A DNA double-strand break 24.3 19 0.00064 26.7 0.4 10 111-120 28-37 (203)
297 1hp9_A Kappa-hefutoxin 1; scor 24.3 11 0.00039 22.0 -0.6 11 81-91 10-20 (26)
298 2og2_A Putative signal recogni 24.2 19 0.00065 30.1 0.4 15 109-123 160-174 (359)
299 1sr3_A APO-CCME; OB fold, beta 24.2 33 0.0011 26.0 1.8 34 57-90 67-107 (136)
300 2p5s_A RAS and EF-hand domain 24.1 19 0.00064 25.2 0.3 13 108-120 30-42 (199)
301 3def_A T7I23.11 protein; chlor 23.9 20 0.00069 27.0 0.5 12 109-120 39-50 (262)
302 1m7g_A Adenylylsulfate kinase; 23.9 19 0.00066 26.0 0.4 12 109-120 28-39 (211)
303 3n70_A Transport activator; si 23.8 27 0.00092 23.9 1.1 15 107-121 25-39 (145)
304 2b6h_A ADP-ribosylation factor 23.8 21 0.0007 25.1 0.5 12 109-120 32-43 (192)
305 3tqc_A Pantothenate kinase; bi 23.6 19 0.00066 29.6 0.4 14 109-122 95-108 (321)
306 1tev_A UMP-CMP kinase; ploop, 23.5 20 0.00068 24.5 0.4 12 109-120 6-17 (196)
307 2j0v_A RAC-like GTP-binding pr 23.4 21 0.00072 25.0 0.5 12 109-120 12-23 (212)
308 1xjc_A MOBB protein homolog; s 23.2 23 0.00079 26.6 0.7 12 109-120 7-18 (169)
309 2zts_A Putative uncharacterize 23.2 20 0.0007 25.5 0.4 11 110-120 34-44 (251)
310 2hup_A RAS-related protein RAB 23.0 22 0.00074 25.2 0.5 13 108-120 31-43 (201)
311 4dhe_A Probable GTP-binding pr 23.0 9.4 0.00032 27.0 -1.4 12 109-120 32-43 (223)
312 1iy2_A ATP-dependent metallopr 23.0 20 0.0007 27.0 0.4 35 88-123 48-90 (278)
313 1vaj_A Hypothetical protein PH 22.9 19 0.00065 28.8 0.2 74 73-147 44-134 (214)
314 3g5u_A MCG1178, multidrug resi 22.8 21 0.00071 34.3 0.4 15 109-123 1062-1076(1284)
315 2www_A Methylmalonic aciduria 22.8 21 0.0007 28.9 0.4 12 109-120 77-88 (349)
316 3iev_A GTP-binding protein ERA 22.7 21 0.00071 28.1 0.4 11 110-120 14-24 (308)
317 2vli_A Antibiotic resistance p 22.6 23 0.00078 24.3 0.5 12 109-120 8-19 (183)
318 3k53_A Ferrous iron transport 22.6 23 0.00077 26.8 0.5 12 109-120 6-17 (271)
319 1qf9_A UMP/CMP kinase, protein 22.4 23 0.00078 24.2 0.5 13 109-121 9-21 (194)
320 3co5_A Putative two-component 22.4 32 0.0011 23.6 1.2 15 107-121 28-42 (143)
321 2yhs_A FTSY, cell division pro 22.1 21 0.00073 31.8 0.4 15 109-123 296-310 (503)
322 1puj_A YLQF, conserved hypothe 22.0 23 0.00079 27.9 0.5 12 109-120 123-134 (282)
323 3ozx_A RNAse L inhibitor; ATP 22.0 22 0.00074 31.1 0.4 17 110-126 29-45 (538)
324 3j16_B RLI1P; ribosome recycli 22.0 22 0.00074 31.8 0.4 19 108-126 105-123 (608)
325 1nij_A Hypothetical protein YJ 22.0 26 0.0009 27.7 0.8 13 111-123 9-21 (318)
326 2c95_A Adenylate kinase 1; tra 21.8 24 0.00082 24.4 0.5 12 109-120 12-23 (196)
327 1odf_A YGR205W, hypothetical 3 21.4 23 0.00078 28.2 0.4 13 109-121 34-46 (290)
328 3cpj_B GTP-binding protein YPT 21.3 23 0.00078 25.4 0.3 13 108-120 15-27 (223)
329 3bk7_A ABC transporter ATP-bin 21.3 23 0.00078 31.5 0.4 19 107-125 118-136 (607)
330 2bwj_A Adenylate kinase 5; pho 21.2 25 0.00086 24.3 0.5 12 109-120 15-26 (199)
331 2hjg_A GTP-binding protein ENG 21.1 23 0.0008 29.1 0.4 12 109-120 6-17 (436)
332 1y63_A LMAJ004144AAA protein; 20.9 24 0.00082 25.0 0.4 12 109-120 13-24 (184)
333 2o5v_A DNA replication and rep 20.8 24 0.00082 29.3 0.4 11 110-120 30-40 (359)
334 3q3j_B RHO-related GTP-binding 20.7 24 0.00083 25.3 0.4 30 86-120 12-41 (214)
335 1gvn_B Zeta; postsegregational 20.4 28 0.00096 27.3 0.7 12 109-120 36-47 (287)
336 3vkw_A Replicase large subunit 20.3 51 0.0017 28.9 2.4 100 22-123 55-178 (446)
337 1ww7_A Galectin; carbohydrate 20.2 73 0.0025 24.3 3.0 13 118-130 99-111 (160)
338 3qkt_A DNA double-strand break 20.2 25 0.00086 27.9 0.4 12 111-122 28-39 (339)
No 1
>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A
Probab=100.00 E-value=1.9e-91 Score=545.62 Aligned_cols=133 Identities=68% Similarity=1.037 Sum_probs=123.7
Q ss_pred HHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEEeecCCCCeEEEEeecCCCccchhcchhhhhhhcc
Q psy13769 23 FAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCTAVVKNQ 102 (155)
Q Consensus 23 ~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL~~VpDGT~Vtv~AGNDEn~~aELRN~tavmknq 102 (155)
.|++.|+|+||+||||+||||||+||+||+|||||||||.+|||||||+|||||+|||+|||||||||||||++|+||||
T Consensus 3 er~~~e~l~~~~gelv~T~sP~~~cs~LP~HWRsNKtLP~~FkVvalg~V~DGT~Vtv~AGNDEn~~aelrN~~a~mknq 82 (140)
T 1eaq_A 3 DRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQ 82 (140)
T ss_dssp --CHHHHHHHSTTTCEECSSTTEEECCCCSEEETTCCCSSCCEEEESSCCCTTCEEEEEEEETTEEEECEESCEEEEETT
T ss_pred chhHHHHHhhCCCceEecCCCCEEEccCcchhccCCCCCCceEEEEecccCCCCEEEEEecCCcchhHHHHhHHHHHhhc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeeeccCCCceeEEEEEEecCCceeeeeeeeeEEeeeCCCCCCCCC
Q psy13769 103 VAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPREPRSKS 155 (155)
Q Consensus 103 vA~FNDLRFvGRSGRGKsftltItv~t~Ppqvaty~~AIKVTVDGPRePR~k~ 155 (155)
|||||||||||||||||||+|||+|+|+|||||||+||||||||||||||+++
T Consensus 83 vA~FnDLRFvgRSGRGKsFtlTItv~t~PpqvAty~~AIKVTVDGPRePR~~r 135 (140)
T 1eaq_A 83 VARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHR 135 (140)
T ss_dssp EEECSSCEECSCCCTTCCBEEEEEECSSSCEEEECSSCBEEESSCC-------
T ss_pred cceeecccccccCCCCccEEEEEEEecCCcchhhheeeEEEEecCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999974
No 2
>2zhn_A Galectin-9; beta sandwich, carbohydrate binding protein, sugar protein; HET: NAG GAL; 1.30A {Homo sapiens} PDB: 2eak_A* 2eal_A* 2zhk_A* 2zhm_A* 2zhl_A* 2yy1_A* 3lsd_A 3lse_A*
Probab=86.75 E-value=1.8 Score=31.84 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=16.4
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
+|+.|.|+|.+.- ..+||.|+|
T Consensus 95 ~G~~F~l~i~~~~---------~~f~V~vng 116 (148)
T 2zhn_A 95 KGMPFDLCFLVQS---------SDFKVMVNG 116 (148)
T ss_dssp TTCEEEEEEEECS---------SEEEEEETT
T ss_pred CCCeEEEEEEEcC---------CEEEEEECC
Confidence 6999999998764 355666666
No 3
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.65 E-value=0.52 Score=41.08 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=69.7
Q ss_pred cchhHHHHHHHHHhhhccceeecCCCcEEeecCCCccccCCCCCcceEEEEeec-CCCCeEEEEeecCCCcc-chhcch-
Q psy13769 18 MTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDD-VMDGTIVTIRAGNDDNY-CGELRN- 94 (155)
Q Consensus 18 ~~~~~~~~~~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL~~-VpDGT~Vtv~AGNDEn~-~aELRN- 94 (155)
++.+.+..+...++...|.-+-..+|.+-+. ||..-|.+-.+ -.+ ..+|+.++|+-=..... ..+|-+
T Consensus 172 ~~~~~l~~li~~i~~~~g~~i~~~~P~~~~~-lp~g~Rv~~~~--------~~~~~~~G~~i~IR~~~~~~~~~~~l~~~ 242 (511)
T 2oap_1 172 LDQEKLDRMVLRLTQRSGKHISIANPIVDAT-LPDGSRLQATF--------GTEVTPRGSSFTIRKFTIEPLTPIDLIEK 242 (511)
T ss_dssp CCHHHHHHHHHHHHHHTTCCCBTTBCEEEEE-ETTTEEEEEEC--------SSSSCTTCSEEEEEECCCCCCCHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHcCCCccccCcceeee-cCCCeEEEEEE--------CCCccCCCCEEEEEecCCCCCChhhHHhc
Confidence 3557778888888888887666677865433 45544433222 012 36899999997665543 222221
Q ss_pred --hh----hhhhcccccccceeeeeccCCCceeEEEEEEecCCceeeeeeeeeEEeeeCCCCC
Q psy13769 95 --CT----AVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPREP 151 (155)
Q Consensus 95 --~t----avmknqvA~FNDLRFvGRSGRGKsftltItv~t~Ppqvaty~~AIKVTVDGPReP 151 (155)
.+ ..+.-.+..-.-+=++|.+|+|||=+|..-..--||.- =.||++||.|-
T Consensus 243 G~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~------giitied~~E~ 299 (511)
T 2oap_1 243 GTVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA------KVVSIEDTREI 299 (511)
T ss_dssp TSSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTC------CEEEEESSCCC
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCC------CEEEEcCcccc
Confidence 11 11222223333477999999999977765555555531 13677887763
No 4
>3nv1_A Galectin-9, galectin 9 short isoform variant; sugar binding, sugar binding protein; 1.50A {Homo sapiens} SCOP: b.29.1.0 PDB: 3nv2_A* 3nv3_A* 3nv4_A*
Probab=80.37 E-value=6.2 Score=28.66 Aligned_cols=22 Identities=45% Similarity=0.831 Sum_probs=16.9
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
+|+.|.|+|.+.. ..+||.|+|
T Consensus 85 ~G~~F~l~I~~~~---------~~f~V~vng 106 (138)
T 3nv1_A 85 RGQSFSVWILCEA---------HCLKVAVDG 106 (138)
T ss_dssp TTCEEEEEEEECS---------SEEEEEETT
T ss_pred CCCeEEEEEEEcc---------ceEEEEECC
Confidence 7999999998764 456677766
No 5
>2yro_A Galectin-8; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.66 E-value=10 Score=28.16 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=15.9
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
+|+.|.|+|.+.- ..+||.|||
T Consensus 95 ~G~~F~l~I~~~~---------~~f~V~VNg 116 (155)
T 2yro_A 95 PGMYFEMIIYCDV---------REFKVAVNG 116 (155)
T ss_dssp TTSEEEEEEEECS---------SEEEEEETT
T ss_pred CCCeEEEEEEEcC---------CEEEEEECC
Confidence 5899999998764 345666665
No 6
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=71.84 E-value=2.8 Score=34.22 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=26.3
Q ss_pred cceeeeeccCCCceeEEEEEEecCCceeeeeeeeeEEeeeCCCCCC
Q psy13769 107 NDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPREPR 152 (155)
Q Consensus 107 NDLRFvGRSGRGKsftltItv~t~Ppqvaty~~AIKVTVDGPRePR 152 (155)
.=+=++|.||+|||=.+.+-..-.||. .=.|+++|++|.+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~------~g~I~ie~~~e~~ 215 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFD------QRLITIEDVPELF 215 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTT------SCEEEEESSSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCC------ceEEEECCccccC
Confidence 345589999999996665544445553 2356777877653
No 7
>2d6m_A Galectin-9, lectin, galactose binding, soluble 9; beta sandwich, carbohydrate binding protein, sugar binding protein; HET: LBT; 1.60A {Mus musculus} PDB: 2d6l_X 2d6k_A* 2d6n_A* 2d6p_A* 2d6o_X*
Probab=69.80 E-value=12 Score=27.92 Aligned_cols=77 Identities=25% Similarity=0.395 Sum_probs=40.7
Q ss_pred CCcceEEEEeecCCCCeEEEEee---cCCCccchhcchhhhhhhcccc-----cccc-eeee------e------ccC--
Q psy13769 60 LPIAFKVVVLDDVMDGTIVTIRA---GNDDNYCGELRNCTAVVKNQVA-----KFND-LRFV------G------RSG-- 116 (155)
Q Consensus 60 LP~~FkVvaL~~VpDGT~Vtv~A---GNDEn~~aELRN~tavmknqvA-----~FND-LRFv------G------RSG-- 116 (155)
+|++|..-.-+....|..|+|.. .+.+.+.=.|..... .+.+| ||+| =..| | |++
T Consensus 15 p~vPf~~~i~~gl~~G~~i~I~G~v~~~~~rF~Inl~~g~~--~~dialHfnpRf~~~~~IV~Ns~~~g~Wg~EEr~~~~ 92 (159)
T 2d6m_A 15 PIIPFTGPIQGGLQEGLQVTLQGTTKSFAQRFVVNFQNSFN--GNDIAFHFNPRFEEGGYVVCNTKQNGQWGPEERKMQM 92 (159)
T ss_dssp CCSSEEEECTTCCCTTCEEEEEEEECSSCCBEEEEEESSTT--CSCEEEEEEEECCTTCEEEEEEEETTEECCCEEECCC
T ss_pred CCCCEEEECCCCCccCCEEEEEEEECCCCCEEEEEEecCCC--CCCEEEEEEEEECCCCEEEEEcccCCEeCcceEcCCC
Confidence 45566654446666777777664 223344444444322 12232 3432 1111 0 332
Q ss_pred ---CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 ---RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 ---RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
+|+.|.|+|.+.- ..+||.|||
T Consensus 93 PF~~G~~F~l~I~~~~---------~~f~V~Vng 117 (159)
T 2d6m_A 93 PFQKGMPFELCFLVQR---------SEFKVMVNK 117 (159)
T ss_dssp CCCTTCEEEEEEEECS---------SEEEEEETT
T ss_pred CcCCCCcEEEEEEEeC---------CEEEEEECC
Confidence 6999999998764 355666666
No 8
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}
Probab=68.98 E-value=3.1 Score=34.69 Aligned_cols=27 Identities=44% Similarity=0.688 Sum_probs=20.3
Q ss_pred eeeeccCCCceeEEEEEEecCCceeeeee
Q psy13769 110 RFVGRSGRGKSFTLSIMVGSSPHQIASYN 138 (155)
Q Consensus 110 RFvGRSGRGKsftltItv~t~Ppqvaty~ 138 (155)
||-| ||.|..|+|+|+ ...|-..|+|-
T Consensus 197 RFSg-S~sgt~ftLtIs-~lq~eD~A~YY 223 (254)
T 4f9p_D 197 RFSG-SGSGTEFTLSIN-SVETEDFGIYF 223 (254)
T ss_dssp TCEE-ECCTTEEEEEEE-SCCTTCCEEEE
T ss_pred CEEe-eeeCCEEEEEEC-CCCHHHCEEEE
Confidence 7766 788999999987 34566777763
No 9
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=67.17 E-value=1.4 Score=31.57 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=12.4
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+=++|.||+|||-.+.
T Consensus 12 ~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4579999999985544
No 10
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=63.94 E-value=1.7 Score=31.93 Aligned_cols=12 Identities=50% Similarity=0.742 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.||.|||
T Consensus 7 i~lvGpsGaGKS 18 (198)
T 1lvg_A 7 VVLSGPSGAGKS 18 (198)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999997
No 11
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=63.27 E-value=1.7 Score=31.64 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=12.5
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+=++|.||+|||=.+.
T Consensus 23 ~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVR 38 (207)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5689999999984443
No 12
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=63.15 E-value=1.9 Score=30.34 Aligned_cols=12 Identities=58% Similarity=0.933 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|++|.|||
T Consensus 29 v~lvG~~g~GKS 40 (210)
T 1pui_A 29 VAFAGRSNAGKS 40 (210)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 13
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=61.77 E-value=1.9 Score=32.17 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=11.6
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+=++|.||.|||=.+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 457999999998433
No 14
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=61.24 E-value=2.3 Score=31.01 Aligned_cols=13 Identities=38% Similarity=0.636 Sum_probs=10.6
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=.+|.||+|||=
T Consensus 25 v~I~G~sGsGKST 37 (208)
T 3c8u_A 25 VALSGAPGSGKST 37 (208)
T ss_dssp EEEECCTTSCTHH
T ss_pred EEEECCCCCCHHH
Confidence 4478999999984
No 15
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Probab=61.17 E-value=4 Score=34.06 Aligned_cols=28 Identities=46% Similarity=0.738 Sum_probs=19.9
Q ss_pred eeeeccCCCceeEEEEEEecCCceeeeeee
Q psy13769 110 RFVGRSGRGKSFTLSIMVGSSPHQIASYNK 139 (155)
Q Consensus 110 RFvGRSGRGKsftltItv~t~Ppqvaty~~ 139 (155)
||-| ||.|..|+|||+- ..|-..|+|-=
T Consensus 61 RFSg-S~Sgt~ftLtIs~-lq~eD~A~YyC 88 (259)
T 4f9l_D 61 RFSG-SGSATGFTLTISS-LQPEDIATYYC 88 (259)
T ss_dssp TEEE-EEETTEEEEEEES-CCGGGCEEEEE
T ss_pred CEEe-eccCCeEEEEEcc-cChhhCEEEEE
Confidence 7766 7789999999873 34556666643
No 16
>3zsj_A Galectin-3; sugar binding protein; HET: LAT; 0.86A {Homo sapiens} SCOP: b.29.1.3 PDB: 2nmn_A* 2nn8_A* 2nmo_A* 3t1m_A* 3t1l_A* 1kjl_A* 1kjr_A* 1a3k_A* 2xg3_A* 3zsk_A 3zsl_A 3zsm_A 3ayc_A* 3aya_A* 3ayd_A* 3aye_A*
Probab=60.69 E-value=27 Score=25.21 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=16.4
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
+|+.|.|+|.+.. ..+||.|+|
T Consensus 82 ~G~~F~l~I~~~~---------~~f~V~vng 103 (138)
T 3zsj_A 82 SGKPFKIQVLVEP---------DHFKVAVND 103 (138)
T ss_dssp TTCEEEEEEEECS---------SEEEEEETT
T ss_pred CCCeEEEEEEEcc---------ceEEEEECC
Confidence 7999999998764 356666666
No 17
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=60.66 E-value=5.2 Score=28.49 Aligned_cols=19 Identities=32% Similarity=0.315 Sum_probs=15.1
Q ss_pred cccceeeeeccCCCceeEE
Q psy13769 105 KFNDLRFVGRSGRGKSFTL 123 (155)
Q Consensus 105 ~FNDLRFvGRSGRGKsftl 123 (155)
.-+-+=++|.+|.|||.-+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4556789999999998744
No 18
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=59.61 E-value=2.3 Score=30.00 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=10.7
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=++|-||+|||=
T Consensus 10 i~l~Gp~GsGKST 22 (205)
T 3tr0_A 10 FIISAPSGAGKTS 22 (205)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECcCCCCHHH
Confidence 4478999999984
No 19
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=59.27 E-value=2.3 Score=30.44 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=9.8
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|-||.|||
T Consensus 8 i~i~GpsGsGKS 19 (180)
T 1kgd_A 8 LVLLGAHGVGRR 19 (180)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 347899999985
No 20
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=58.89 E-value=2.5 Score=30.07 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=17.5
Q ss_pred hcccccccceeeeeccCCCceeEEEE
Q psy13769 100 KNQVAKFNDLRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 100 knqvA~FNDLRFvGRSGRGKsftltI 125 (155)
...+.+-.=+=++|.||.|||-.+.+
T Consensus 19 ~ggi~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 19 GGGIETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHH
T ss_pred cCCCCCCcEEEEECCCCCCHHHHHHH
Confidence 34444444566899999999965543
No 21
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=58.43 E-value=2.6 Score=32.07 Aligned_cols=17 Identities=47% Similarity=0.684 Sum_probs=12.3
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=++|.||+|||=-|.+
T Consensus 33 ~~iiG~nGsGKSTLl~~ 49 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYI 49 (224)
T ss_dssp EEEEECTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44689999999944433
No 22
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=56.89 E-value=2.8 Score=29.28 Aligned_cols=11 Identities=55% Similarity=0.881 Sum_probs=9.6
Q ss_pred eeeeccCCCce
Q psy13769 110 RFVGRSGRGKS 120 (155)
Q Consensus 110 RFvGRSGRGKs 120 (155)
=++|.||.|||
T Consensus 30 ~i~G~NGsGKS 40 (182)
T 3kta_A 30 AIVGANGSGKS 40 (182)
T ss_dssp EEEECTTSSHH
T ss_pred EEECCCCCCHH
Confidence 37899999998
No 23
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=56.11 E-value=2.8 Score=29.46 Aligned_cols=13 Identities=38% Similarity=0.572 Sum_probs=10.5
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=++|-||+|||-
T Consensus 9 i~l~G~~GsGKST 21 (207)
T 2j41_A 9 IVLSGPSGVGKGT 21 (207)
T ss_dssp EEEECSTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 4578999999973
No 24
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=55.88 E-value=38 Score=27.27 Aligned_cols=38 Identities=16% Similarity=0.378 Sum_probs=25.6
Q ss_pred cceeeeeccCCCceeEEEEEEecCCceeeeeeeeeEEeeeCCCC
Q psy13769 107 NDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPRE 150 (155)
Q Consensus 107 NDLRFvGRSGRGKsftltItv~t~Ppqvaty~~AIKVTVDGPRe 150 (155)
.-+=++|.||+|||=.|.+-..-.||. .=.|+++|++|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~------~g~i~i~~~~e 209 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE------ERIISIEDTEE 209 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT------SCEEEEESSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC------CcEEEECCeec
Confidence 346689999999996665555555553 12467788765
No 25
>2wkk_A Galectin-2; sugar-binding protein, secreted, cell WALL, sugar binding, sugar binding protein, beta-galactoside binding lectin, fruiting BODY; HET: GAL NAG FUC; 1.50A {Coprinopsis cinerea} PDB: 1ulc_A* 1ul9_A* 1ule_A* 1ulf_A* 1ulg_A* 1uld_A*
Probab=55.84 E-value=25 Score=26.02 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=16.3
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
+|+.|.|+|.+.- ..+||.|||
T Consensus 85 ~G~~F~l~I~~~~---------~~f~V~VNg 106 (150)
T 2wkk_A 85 RPPNPSITVIDHG---------DRFQIRFDY 106 (150)
T ss_dssp CSSSCEEEEEECS---------SEEEEECSS
T ss_pred CCCCEEEEEEECC---------CEEEEEECC
Confidence 6999999998763 455666665
No 26
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=55.39 E-value=3.1 Score=29.02 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|++|.|||
T Consensus 7 i~ivG~~g~GKS 18 (172)
T 2gj8_A 7 VVIAGRPNAGKS 18 (172)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 448999999998
No 27
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=54.95 E-value=3.2 Score=28.98 Aligned_cols=13 Identities=46% Similarity=0.682 Sum_probs=11.0
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=++|-||+|||=
T Consensus 12 i~l~G~~GsGKST 24 (191)
T 1zp6_A 12 LLLSGHPGSGKST 24 (191)
T ss_dssp EEEEECTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 5579999999984
No 28
>1x50_A Galectin-4; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.89 E-value=26 Score=26.31 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=16.2
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
+|+.|.|+|.+.- ..+||.|||
T Consensus 105 ~G~~F~l~I~~~~---------~~f~V~VNg 126 (164)
T 1x50_A 105 PGQFFDLSIRCGL---------DRFKVYANG 126 (164)
T ss_dssp TTSEEEEEEEECS---------SEEEEEESS
T ss_pred CCCeEEEEEEEcC---------CEEEEEECC
Confidence 6899999998764 355666666
No 29
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=54.76 E-value=3.2 Score=29.71 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=10.6
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=.+|.||+|||-
T Consensus 9 i~i~G~~GsGKST 21 (211)
T 3asz_A 9 IGIAGGTASGKTT 21 (211)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4578999999984
No 30
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=54.61 E-value=3.3 Score=39.82 Aligned_cols=13 Identities=62% Similarity=0.848 Sum_probs=11.0
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
=+=+|||||+|||
T Consensus 1107 ~vaIVG~SGsGKS 1119 (1321)
T 4f4c_A 1107 TLALVGPSGCGKS 1119 (1321)
T ss_dssp EEEEECSTTSSTT
T ss_pred EEEEECCCCChHH
Confidence 3557999999998
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=54.59 E-value=3 Score=31.99 Aligned_cols=17 Identities=47% Similarity=0.765 Sum_probs=12.5
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=.+|.||+|||=-|.+
T Consensus 31 ~~i~G~nGsGKSTLl~~ 47 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSL 47 (243)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34689999999854444
No 32
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=53.89 E-value=3.2 Score=28.44 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|++|.|||
T Consensus 6 v~lvG~~gvGKS 17 (165)
T 2wji_A 6 IALIGNPNVGKS 17 (165)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999986
No 33
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=53.58 E-value=3.2 Score=32.20 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=15.0
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||+|||=-|.+-.-..+|
T Consensus 38 ~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 346899999998544443333344
No 34
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=53.38 E-value=3.2 Score=31.85 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=14.9
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||+|||=-|.+-.-..+|
T Consensus 34 ~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 456899999999444333333344
No 35
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=53.28 E-value=4.1 Score=28.26 Aligned_cols=13 Identities=46% Similarity=0.629 Sum_probs=10.9
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=++|-||+|||-
T Consensus 11 i~l~G~~GsGKST 23 (175)
T 1knq_A 11 YVLMGVSGSGKSA 23 (175)
T ss_dssp EEEECSTTSCHHH
T ss_pred EEEEcCCCCCHHH
Confidence 5678999999984
No 36
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=53.23 E-value=3.3 Score=29.90 Aligned_cols=12 Identities=50% Similarity=0.731 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|-||+|||
T Consensus 28 i~l~G~sGsGKS 39 (200)
T 3uie_A 28 IWVTGLSGSGKS 39 (200)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568899999998
No 37
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=53.16 E-value=3.4 Score=28.41 Aligned_cols=13 Identities=46% Similarity=0.644 Sum_probs=10.7
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=++|-||+|||-
T Consensus 7 i~l~G~~GsGKST 19 (173)
T 1kag_A 7 IFLVGPMGAGKST 19 (173)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 4579999999983
No 38
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=53.05 E-value=3.3 Score=29.78 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=15.0
Q ss_pred ccccccceeeeeccCCCceeEE
Q psy13769 102 QVAKFNDLRFVGRSGRGKSFTL 123 (155)
Q Consensus 102 qvA~FNDLRFvGRSGRGKsftl 123 (155)
.+.+=.=+=++|.||.|||-.+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHH
Confidence 4444444567899999998544
No 39
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=52.72 E-value=3.4 Score=31.79 Aligned_cols=13 Identities=46% Similarity=0.652 Sum_probs=10.3
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=.+|.||+|||=
T Consensus 34 ~~i~G~nGsGKST 46 (237)
T 2cbz_A 34 VAVVGQVGCGKSS 46 (237)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 3458999999983
No 40
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=52.61 E-value=3.9 Score=27.81 Aligned_cols=13 Identities=38% Similarity=0.767 Sum_probs=11.2
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
.+=++|.+|.|||
T Consensus 12 ki~v~G~~~~GKS 24 (186)
T 2bme_A 12 KFLVIGNAGTGKS 24 (186)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4668999999997
No 41
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=52.34 E-value=3.5 Score=29.64 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.||+|||
T Consensus 8 i~i~G~~GsGKS 19 (227)
T 1cke_A 8 ITIDGPSGAGKG 19 (227)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 42
>1g86_A Charcot-leyden crystal protein; beta barrel, hydrolase; 1.80A {Homo sapiens} SCOP: b.29.1.3 PDB: 1lcl_A 1qkq_A* 1hdk_A*
Probab=52.14 E-value=11 Score=27.40 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=16.5
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
+|+.|.|+|.+.- ..+||.|+|
T Consensus 85 ~G~~F~l~I~~~~---------~~f~V~Vng 106 (142)
T 1g86_A 85 DGQEFELSISVLP---------DKYQVMVNG 106 (142)
T ss_dssp TTCCEEEEEEECS---------SEEEEEETT
T ss_pred CCCcEEEEEEeCC---------CEEEEEECC
Confidence 6999999998764 456666666
No 43
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=50.58 E-value=4 Score=34.90 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=12.7
Q ss_pred ceeeeeccCCCceeEE
Q psy13769 108 DLRFVGRSGRGKSFTL 123 (155)
Q Consensus 108 DLRFvGRSGRGKsftl 123 (155)
-+=++|+||.|||=.|
T Consensus 71 ~valvG~nGaGKSTLl 86 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFI 86 (413)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4568999999998544
No 44
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=50.36 E-value=3.9 Score=27.96 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 10 i~lvG~~gvGKS 21 (188)
T 2wjg_A 10 IALIGNPNVGKS 21 (188)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558999999997
No 45
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=49.73 E-value=4.1 Score=31.11 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=15.3
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||.|||=-+.+-....||
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCT
T ss_pred EEEECCCCCCHHHHHHHHhccCCC
Confidence 447899999998544443333444
No 46
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=49.64 E-value=4 Score=32.15 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=12.4
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=.+|.||+|||=-|.+
T Consensus 48 ~~i~G~nGsGKSTLlk~ 64 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAAL 64 (271)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34689999999854443
No 47
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=49.60 E-value=4 Score=31.50 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=11.8
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+=.+|.||+|||=-|.
T Consensus 32 ~~l~G~nGsGKSTLlk 47 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGK 47 (250)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3468999999984433
No 48
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=49.57 E-value=3.7 Score=35.31 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=25.9
Q ss_pred CCeEEEEeecCCCccc---hhcchhhhhhhccccccccee----------eeeccCCCceeEEE
Q psy13769 74 DGTIVTIRAGNDDNYC---GELRNCTAVVKNQVAKFNDLR----------FVGRSGRGKSFTLS 124 (155)
Q Consensus 74 DGT~Vtv~AGNDEn~~---aELRN~tavmknqvA~FNDLR----------FvGRSGRGKsftlt 124 (155)
.|+.+.+...++..|. ++- ...-.++|-..+|.|++ .+|+||+|||=-+.
T Consensus 94 ~~~~l~i~~~~~~e~~~~~~~~-~~mi~~~nl~~~y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr 156 (460)
T 2npi_A 94 EETELLWKCPDLTTNTITVKPN-HTMKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSR 156 (460)
T ss_dssp SSCEEEEECTTCCSSSCCCEEC-CTHHHHHHHHHHHHHHHHHSSSCCCEEEEESTTSSHHHHHH
T ss_pred cceEEEEecCCccceeecCCCC-cchhhhhhhhehhhcCceEeCCCCEEEEECCCCCCHHHHHH
Confidence 3455666666554444 211 11122333333444444 57999999984443
No 49
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=49.40 E-value=4.1 Score=30.00 Aligned_cols=12 Identities=50% Similarity=0.971 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|++|.|||
T Consensus 32 i~lvG~~g~GKS 43 (239)
T 3lxx_A 32 IVLVGKTGAGKS 43 (239)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 348999999998
No 50
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=49.31 E-value=4.1 Score=32.15 Aligned_cols=13 Identities=46% Similarity=0.509 Sum_probs=11.0
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+-++|.||.|||=
T Consensus 172 v~l~G~sG~GKST 184 (301)
T 1u0l_A 172 STMAGLSGVGKSS 184 (301)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCcHHH
Confidence 4589999999984
No 51
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=49.10 E-value=4.2 Score=31.59 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=15.6
Q ss_pred ceeeeeccCCCceeEEEEEEecCCc
Q psy13769 108 DLRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 108 DLRFvGRSGRGKsftltItv~t~Pp 132 (155)
=+=.+|.||+|||=-|.+-.--.+|
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3457899999998554443333344
No 52
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=49.08 E-value=4.1 Score=31.79 Aligned_cols=14 Identities=43% Similarity=0.665 Sum_probs=10.9
Q ss_pred eeeeccCCCceeEE
Q psy13769 110 RFVGRSGRGKSFTL 123 (155)
Q Consensus 110 RFvGRSGRGKsftl 123 (155)
=.+|.||+|||=-|
T Consensus 50 ~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 50 ALVGHTGSGKSTIA 63 (260)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 46899999998443
No 53
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=48.86 E-value=4.2 Score=30.98 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=10.4
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=.+|.||+|||=
T Consensus 37 ~~i~G~nGsGKST 49 (229)
T 2pze_A 37 LAVAGSTGAGKTS 49 (229)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 3468999999984
No 54
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=48.60 E-value=4.3 Score=31.75 Aligned_cols=17 Identities=41% Similarity=0.628 Sum_probs=12.2
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=.+|.||+|||=-|.+
T Consensus 35 ~~liG~nGsGKSTLlk~ 51 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRC 51 (262)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34689999999854433
No 55
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=48.42 E-value=4.3 Score=32.09 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=15.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||+|||=-|.+-.-..+|
T Consensus 53 ~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEcCCCCcHHHHHHHHHcCCCC
Confidence 346899999999555443333344
No 56
>3b9c_A HSPC159; beta sandwich, unknown function; 1.90A {Homo sapiens} PDB: 2jj6_A
Probab=48.41 E-value=14 Score=27.04 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=16.7
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
+|+.|.|+|.+.- ..+||.|||
T Consensus 92 ~G~~F~l~I~~~~---------~~f~V~Vng 113 (144)
T 3b9c_A 92 PDQPFRVEILCEY---------PRFRVFVDG 113 (144)
T ss_dssp TTCEEEEEEEECS---------SEEEEEETT
T ss_pred CCCcEEEEEEEcC---------CEEEEEECC
Confidence 6999999998753 456677776
No 57
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=48.39 E-value=4.6 Score=28.58 Aligned_cols=13 Identities=46% Similarity=0.690 Sum_probs=11.0
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=++|.+|.|||=
T Consensus 32 v~lvG~~g~GKST 44 (191)
T 1oix_A 32 VVLIGDSGVGKSN 44 (191)
T ss_dssp EEEEECTTSSHHH
T ss_pred EEEECcCCCCHHH
Confidence 4589999999983
No 58
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=48.26 E-value=5.4 Score=27.96 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=20.8
Q ss_pred hcchhhhhhhcccccc-----cceeeeeccCCCceeEE
Q psy13769 91 ELRNCTAVVKNQVAKF-----NDLRFVGRSGRGKSFTL 123 (155)
Q Consensus 91 ELRN~tavmknqvA~F-----NDLRFvGRSGRGKsftl 123 (155)
+.+.+...+++.+..| .-+=++|.+|.|||..+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 18 SQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 3444445555444444 34678999999998644
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=48.07 E-value=4.5 Score=26.45 Aligned_cols=12 Identities=42% Similarity=0.697 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 6 i~v~G~~~~GKS 17 (167)
T 1kao_A 6 VVVLGSGGVGKS 17 (167)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999997
No 60
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=47.77 E-value=16 Score=30.18 Aligned_cols=60 Identities=25% Similarity=0.231 Sum_probs=34.4
Q ss_pred eEEEEeecCCCCeEEEEeecCCCccch-hcchhhhhhhccccc-ccceeeeeccCCCceeEEEE
Q psy13769 64 FKVVVLDDVMDGTIVTIRAGNDDNYCG-ELRNCTAVVKNQVAK-FNDLRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 64 FkVvaL~~VpDGT~Vtv~AGNDEn~~a-ELRN~tavmknqvA~-FNDLRFvGRSGRGKsftltI 125 (155)
|+|-++. ..+|..|+++--+++...- +| +...++++-..+ -.=+=++|.||+|||=+|.+
T Consensus 81 ~Rv~~~~-~~~g~~~~iR~~~~~~~~l~~l-g~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~ 142 (356)
T 3jvv_A 81 FRVNAFN-QNRGAGAVFRTIPSKVLTMEEL-GMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAA 142 (356)
T ss_dssp EEEEEEE-ETTEEEEEEEEECCSCCCTTTT-TCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHH
T ss_pred EEEEEEe-eCCCcEEEEEECCCCCCCHHHc-CChHHHHHHHhCCCCEEEEECCCCCCHHHHHHH
Confidence 6766665 4678889888766543322 22 122233332211 12256889999999866653
No 61
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=47.76 E-value=4.4 Score=28.57 Aligned_cols=13 Identities=46% Similarity=0.690 Sum_probs=10.7
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=++|.+|.|||=
T Consensus 8 v~lvG~~g~GKST 20 (199)
T 2f9l_A 8 VVLIGDSGVGKSN 20 (199)
T ss_dssp EEEESSTTSSHHH
T ss_pred EEEECcCCCCHHH
Confidence 4589999999983
No 62
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=47.73 E-value=4.6 Score=30.09 Aligned_cols=12 Identities=50% Similarity=0.814 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+-|+|.||.|||
T Consensus 9 i~i~G~sGsGKT 20 (174)
T 1np6_A 9 LAFAAWSGTGKT 20 (174)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEEeCCCCCHH
Confidence 458999999986
No 63
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=47.53 E-value=4.5 Score=31.02 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=14.9
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||+|||=-|.+-.-..+|
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 346899999998544433333344
No 64
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=47.52 E-value=4.5 Score=31.34 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=12.4
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=.+|.||+|||=-|.+
T Consensus 36 ~~liG~nGsGKSTLlk~ 52 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINV 52 (257)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44789999999854443
No 65
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=47.51 E-value=4.6 Score=28.41 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=11.2
Q ss_pred ceeeeeccCCCcee
Q psy13769 108 DLRFVGRSGRGKSF 121 (155)
Q Consensus 108 DLRFvGRSGRGKsf 121 (155)
=+=++|++|.|||.
T Consensus 25 ~~~i~G~~GsGKTt 38 (235)
T 2w0m_A 25 FIALTGEPGTGKTI 38 (235)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 34578999999984
No 66
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=47.25 E-value=4.6 Score=33.13 Aligned_cols=20 Identities=40% Similarity=0.605 Sum_probs=14.6
Q ss_pred ccccccceeeeeccCCCcee
Q psy13769 102 QVAKFNDLRFVGRSGRGKSF 121 (155)
Q Consensus 102 qvA~FNDLRFvGRSGRGKsf 121 (155)
.+.+=+=+=++|+||.|||=
T Consensus 122 ~i~~Ge~vaIvGpsGsGKST 141 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSM 141 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHH
T ss_pred EecCCCEEEEECCCCCcHHH
Confidence 34444556789999999983
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=47.04 E-value=5.4 Score=30.28 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=19.2
Q ss_pred eeeeeccCCCceeEEEEEEecCCceeeee
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPHQIASY 137 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Ppqvaty 137 (155)
+=.+|.||+|||--|.+-.-. +|.-.++
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred EEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 457899999999777665545 5543333
No 68
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=46.80 E-value=4.7 Score=31.48 Aligned_cols=17 Identities=47% Similarity=0.657 Sum_probs=12.4
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=.+|.||+|||=-|.+
T Consensus 36 ~~liG~nGsGKSTLl~~ 52 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQI 52 (266)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCcHHHHHHH
Confidence 34689999999854443
No 69
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=46.68 E-value=4.9 Score=31.67 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=12.7
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=.+|.||+|||=-|.+
T Consensus 40 ~~liG~nGsGKSTLl~~ 56 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRL 56 (266)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCcHHHHHHH
Confidence 45789999999854443
No 70
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=46.56 E-value=5.2 Score=25.99 Aligned_cols=12 Identities=58% Similarity=0.792 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 6 i~v~G~~~~GKs 17 (166)
T 2ce2_X 6 LVVVGAGGVGKS 17 (166)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558999999986
No 71
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=46.53 E-value=4.9 Score=26.51 Aligned_cols=12 Identities=42% Similarity=0.614 Sum_probs=10.1
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 8 i~v~G~~~~GKs 19 (168)
T 1z2a_A 8 MVVVGNGAVGKS 19 (168)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 458999999997
No 72
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=46.41 E-value=5.4 Score=29.28 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=8.8
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=++|-||+|||=.+.+
T Consensus 30 i~l~Gp~GsGKSTl~~~ 46 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANK 46 (231)
T ss_dssp EEEECSCC----CHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45789999999955443
No 73
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=46.21 E-value=5.1 Score=28.89 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=10.6
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=++|.||+|||-
T Consensus 32 i~l~G~~GsGKST 44 (200)
T 4eun_A 32 VVVMGVSGSGKTT 44 (200)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 74
>1c1l_A Protein (congerin I); galectin, lectin, beta-galactose-binding, sugar binding PROT; HET: GAL BGC; 1.50A {Conger myriaster} SCOP: b.29.1.3 PDB: 1c1f_A* 3ajy_A*
Probab=46.06 E-value=16 Score=26.41 Aligned_cols=22 Identities=9% Similarity=0.259 Sum_probs=16.6
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
+|+.|.|+|.+.- ..+||.|+|
T Consensus 84 ~G~~F~l~I~~~~---------~~f~V~Vng 105 (137)
T 1c1l_A 84 AGQYFEITLSYDI---------NKFYIDILD 105 (137)
T ss_dssp TTCEEEEEEEECS---------SEEEEEETT
T ss_pred CCCeEEEEEEEeC---------CEEEEEECC
Confidence 6999999998764 456677766
No 75
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=46.01 E-value=5 Score=30.79 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=12.4
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=.+|.||+|||=-|.+
T Consensus 38 ~~iiG~NGsGKSTLlk~ 54 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKT 54 (214)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34689999999854443
No 76
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=45.80 E-value=5.1 Score=28.31 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=10.8
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
.=++|+||.|||.
T Consensus 23 ~~i~G~~GsGKTt 35 (220)
T 2cvh_A 23 TQVYGPYASGKTT 35 (220)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4578999999984
No 77
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=45.56 E-value=2.9 Score=34.08 Aligned_cols=16 Identities=56% Similarity=0.748 Sum_probs=12.3
Q ss_pred ceeeeeccCCCceeEE
Q psy13769 108 DLRFVGRSGRGKSFTL 123 (155)
Q Consensus 108 DLRFvGRSGRGKsftl 123 (155)
=+=+||+||+|||=-+
T Consensus 82 ~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 82 TLALVGPSGAGKSTIL 97 (306)
T ss_dssp EEEEESSSCHHHHHHH
T ss_pred EEEEECCCCchHHHHH
Confidence 3567999999998443
No 78
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=45.51 E-value=5.2 Score=31.20 Aligned_cols=16 Identities=44% Similarity=0.661 Sum_probs=11.8
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+=.+|.||+|||=-|.
T Consensus 34 ~~l~G~nGsGKSTLl~ 49 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLD 49 (253)
T ss_dssp EEEECCSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3468999999984443
No 79
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=45.38 E-value=5.1 Score=31.94 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=15.3
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||+|||=-|.+-.--.+|
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHHcCCCC
Confidence 347899999998554433333344
No 80
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=45.05 E-value=6.9 Score=26.56 Aligned_cols=16 Identities=44% Similarity=0.729 Sum_probs=8.3
Q ss_pred ceeeeeccCCCceeEE
Q psy13769 108 DLRFVGRSGRGKSFTL 123 (155)
Q Consensus 108 DLRFvGRSGRGKsftl 123 (155)
.+=++|.+|.|||=-+
T Consensus 10 ki~v~G~~~~GKssl~ 25 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVL 25 (183)
T ss_dssp EEEEECCCCC------
T ss_pred EEEEECCCCCCHHHHH
Confidence 3568999999998443
No 81
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=45.04 E-value=5.3 Score=31.27 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=13.1
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=++|.||+|||=.|.+
T Consensus 28 v~i~Gp~GsGKSTll~~ 44 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIAS 44 (261)
T ss_dssp EEEECSTTCSHHHHHHH
T ss_pred EEEECCCCccHHHHHHH
Confidence 55899999999855543
No 82
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=44.82 E-value=5.8 Score=26.50 Aligned_cols=12 Identities=58% Similarity=0.781 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 12 i~v~G~~~~GKs 23 (181)
T 2fn4_A 12 LVVVGGGGVGKS 23 (181)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558999999997
No 83
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=44.63 E-value=5.4 Score=31.27 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=10.9
Q ss_pred eeeeeccCCCceeE
Q psy13769 109 LRFVGRSGRGKSFT 122 (155)
Q Consensus 109 LRFvGRSGRGKsft 122 (155)
+=.+|.||+|||=-
T Consensus 49 ~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 49 HAIMGPNGSGKSTL 62 (267)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 34689999999843
No 84
>3ap9_A Galectin-8; beta-sandwich, carbohydrate/sugar binding, lacto-N fucopentaose III, sugar binding protein; HET: GAL FUC NAG BGC; 1.33A {Homo sapiens} PDB: 3ap4_A 3ap5_A* 3ap6_A* 3ap7_A* 3apb_A 2yv8_A 2yxs_A*
Probab=44.62 E-value=17 Score=26.68 Aligned_cols=22 Identities=45% Similarity=0.670 Sum_probs=16.3
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
+|+.|.|+|.+.- ..+||.|+|
T Consensus 99 ~G~~F~l~I~~~~---------~~f~V~vng 120 (154)
T 3ap9_A 99 REKSFEIVIMVLK---------DKFQVAVNG 120 (154)
T ss_dssp TTCEEEEEEEECS---------SEEEEEETT
T ss_pred cCCeEEEEEEEcC---------CEEEEEECC
Confidence 6899999998764 355666666
No 85
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=44.60 E-value=5.4 Score=31.33 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=15.3
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||+|||=-|.+-.-..+|
T Consensus 44 ~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 346899999998554443333344
No 86
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=44.51 E-value=5.5 Score=26.05 Aligned_cols=12 Identities=50% Similarity=0.772 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 7 i~v~G~~~~GKs 18 (168)
T 1u8z_A 7 VIMVGSGGVGKS 18 (168)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999987
No 87
>1a78_A Galectin-1; S-lectin, carbohydrate binding, complex (lectin/saccharide); HET: TDG; 2.00A {Bufo arenarum} SCOP: b.29.1.3 PDB: 1gan_A*
Probab=44.30 E-value=18 Score=25.99 Aligned_cols=22 Identities=9% Similarity=0.227 Sum_probs=16.2
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
+|+.|.|+|.+.- ..+||.|+|
T Consensus 82 ~G~~F~l~i~~~~---------~~f~V~Vng 103 (134)
T 1a78_A 82 QGAEVMVCFEYQT---------QKIIIKFSS 103 (134)
T ss_dssp TTSEEEEEEEECS---------SEEEEEETT
T ss_pred CCCcEEEEEEEcC---------CEEEEEECC
Confidence 6999999998763 345666666
No 88
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=44.25 E-value=5.4 Score=31.61 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=23.6
Q ss_pred EEEEeecCCCccchhcchhhhhhhcccccccceeeeeccCCCceeEE
Q psy13769 77 IVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTL 123 (155)
Q Consensus 77 ~Vtv~AGNDEn~~aELRN~tavmknqvA~FNDLRFvGRSGRGKsftl 123 (155)
.+.++|-+.+| ..||+... +++ =+=++|.||.|||=.|
T Consensus 145 ~~~~SA~~g~g-i~~L~~~l---~G~-----i~~l~G~sG~GKSTLl 182 (302)
T 2yv5_A 145 VLKVSAKTGEG-IDELVDYL---EGF-----ICILAGPSGVGKSSIL 182 (302)
T ss_dssp EEECCTTTCTT-HHHHHHHT---TTC-----EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCC-HHHHHhhc---cCc-----EEEEECCCCCCHHHHH
Confidence 45667766665 34555433 222 2568999999998443
No 89
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=44.13 E-value=5.5 Score=31.66 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=15.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||+|||=-|.+-.--.+|
T Consensus 50 ~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Confidence 447899999998555443333344
No 90
>3dui_A Beta-galactoside-binding lectin; carbohydrate-binding proteins, galactosides, galectin, acetylation, sugar binding protein; 2.10A {Gallus gallus} SCOP: b.29.1.3
Probab=44.12 E-value=18 Score=26.00 Aligned_cols=22 Identities=14% Similarity=0.478 Sum_probs=17.3
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
+|+.|.|+|.+.- ..+||.|+|
T Consensus 83 ~G~~F~l~I~~~~---------~~f~V~vng 104 (135)
T 3dui_A 83 KGAPIEITFSINP---------SDLTVHLPG 104 (135)
T ss_dssp TTCEEEEEEEECS---------SEEEEEETT
T ss_pred CCCcEEEEEEEeC---------CEEEEEECC
Confidence 6999999998764 357777777
No 91
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=44.12 E-value=5.6 Score=26.16 Aligned_cols=13 Identities=38% Similarity=0.555 Sum_probs=10.6
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=++|.+|.|||=
T Consensus 6 i~v~G~~~~GKss 18 (170)
T 1ek0_A 6 LVLLGEAAVGKSS 18 (170)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4589999999873
No 92
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=44.06 E-value=6 Score=34.26 Aligned_cols=12 Identities=50% Similarity=0.780 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|+||.|||
T Consensus 45 vaLvG~nGaGKS 56 (427)
T 2qag_B 45 ILCVGETGLGKS 56 (427)
T ss_dssp EEEECSTTSSSH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 93
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=44.04 E-value=5.6 Score=26.18 Aligned_cols=12 Identities=50% Similarity=0.758 Sum_probs=10.2
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 6 i~v~G~~~~GKs 17 (167)
T 1c1y_A 6 LVVLGSGGVGKS 17 (167)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999986
No 94
>1w6n_A Galectin-1; carbohydrate-binding proteins, galactosides; 1.65A {Homo sapiens} SCOP: b.29.1.3 PDB: 1w6m_A 1w6o_A* 1w6p_A* 3t2t_A* 1gzw_A* 2km2_A 3oy8_A* 3oyw_A* 1w6q_A 2zkn_A* 3m2m_A* 1slt_A* 1sla_A* 1slb_A* 1slc_A*
Probab=44.00 E-value=17 Score=26.09 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=16.4
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
+|+.|.|+|.+.- ..+||.|+|
T Consensus 81 ~G~~F~l~i~~~~---------~~f~V~Vng 102 (134)
T 1w6n_A 81 PGSVAEVCITFDQ---------ANLTVKLPD 102 (134)
T ss_dssp TTSEEEEEEEECS---------SEEEEECTT
T ss_pred CCCeEEEEEEEeC---------CeEEEEECC
Confidence 6999999998764 355666666
No 95
>1is3_A Congerin II; complex with lactose and MES, sugar binding protein; HET: LAT MES; 1.45A {Conger myriaster} SCOP: b.29.1.3 PDB: 1is4_A* 1is5_A 1is6_A* 1wld_A* 1wlw_A* 1wlc_A* 3ak0_A* 3ajz_A*
Probab=43.83 E-value=18 Score=26.18 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=16.2
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
+|+.|.|+|.+.- ..+||.|+|
T Consensus 82 ~G~~F~l~I~~~~---------~~f~V~vng 103 (135)
T 1is3_A 82 KGDHFQTTITFDT---------HTFYIQLSN 103 (135)
T ss_dssp TTSEEEEEEEECS---------SEEEEECTT
T ss_pred CCCcEEEEEEEcC---------CEEEEEECC
Confidence 5999999998764 345666666
No 96
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Probab=43.76 E-value=18 Score=26.11 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=16.8
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
+|+.|.|+|.+.. ..+||.|+|
T Consensus 85 ~G~~F~l~I~~~~---------~~f~V~vng 106 (138)
T 3zxf_A 85 RGQPFEVLIIASD---------DGFKAVVGD 106 (138)
T ss_dssp TTEEEEEEEEECS---------SEEEEEETT
T ss_pred CCCEEEEEEEEcC---------CeEEEEECC
Confidence 7999999998764 456666666
No 97
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=43.72 E-value=5.6 Score=31.08 Aligned_cols=24 Identities=42% Similarity=0.610 Sum_probs=15.1
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||+|||=-|.+-.--.+|
T Consensus 29 ~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Confidence 346899999998554443333344
No 98
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=43.71 E-value=5.8 Score=29.03 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=10.2
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|-||.|||
T Consensus 11 i~l~GpsGsGKs 22 (208)
T 3tau_A 11 IVLSGPSGVGKG 22 (208)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECcCCCCHH
Confidence 457899999997
No 99
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=43.25 E-value=6 Score=28.59 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=12.6
Q ss_pred ccccceeeeeccCCCce
Q psy13769 104 AKFNDLRFVGRSGRGKS 120 (155)
Q Consensus 104 A~FNDLRFvGRSGRGKs 120 (155)
|+-.=+=++|-||.|||
T Consensus 10 ~~~~~i~l~G~sGsGKs 26 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKG 26 (204)
T ss_dssp CCCCCEEEECCTTSCHH
T ss_pred ccCCEEEEECCCCCCHH
Confidence 44444568899999996
No 100
>1yjd_C TP44, T-cell-specific surface glycoprotein CD28; IGSF, CD28 homodimer, immune system-signaling protein comple; HET: NAG; 2.70A {Homo sapiens} SCOP: b.1.1.1
Probab=43.14 E-value=82 Score=23.04 Aligned_cols=64 Identities=17% Similarity=0.113 Sum_probs=42.2
Q ss_pred eEEEEeecCCCCeEEEEe--ecCCCccchhcchhhhhhhcccccccceeeeeccCCCceeEEEEEEecCCceeeeeeeee
Q psy13769 64 FKVVVLDDVMDGTIVTIR--AGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAI 141 (155)
Q Consensus 64 FkVvaL~~VpDGT~Vtv~--AGNDEn~~aELRN~tavmknqvA~FNDLRFvGRSGRGKsftltItv~t~Ppqvaty~~AI 141 (155)
|++.-+...|.+..+.+. .+|.+| ++.--+..||.|. ..+++|+|+|+= ..+-+-|.|-=|+
T Consensus 35 ~~~~WYrq~pg~~~~l~~~~~~~~~~--------------~~~~~~~~~~~~s-~s~~s~sLtIs~-l~~~Dta~YfCa~ 98 (140)
T 1yjd_C 35 FRASLHKGLDSAVEVCVVYGNYSQQL--------------QVYSKTGFNCDGK-LGNESVTFYLQN-LYVNQTDIYFCKI 98 (140)
T ss_dssp EEEEEEESTTCCCEEEEEEEESSSCC--------------EEECSSSCEEEEE-ECSSEEEEEEES-CCGGGCEEEEEEE
T ss_pred eEEEEEecCCCCceEEEEecCccccc--------------cccCCCCceEEee-ccCCEEEEEECC-CChhhCEEEEEEE
Confidence 788888888888888877 455543 1111125677776 678999999963 3455666666555
Q ss_pred EE
Q psy13769 142 KV 143 (155)
Q Consensus 142 KV 143 (155)
-+
T Consensus 99 ~~ 100 (140)
T 1yjd_C 99 EV 100 (140)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 101
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=42.89 E-value=6 Score=26.35 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 7 i~i~G~~~vGKS 18 (175)
T 2nzj_A 7 VVLLGDPGVGKT 18 (175)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCccHH
Confidence 458999999987
No 102
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=42.70 E-value=6.1 Score=26.03 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=10.2
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 6 i~v~G~~~~GKs 17 (172)
T 2erx_A 6 VAVFGAGGVGKS 17 (172)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999987
No 103
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=42.25 E-value=6.9 Score=33.83 Aligned_cols=16 Identities=56% Similarity=0.704 Sum_probs=12.2
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+=.+|+||+|||=-+.
T Consensus 373 ~~ivG~sGsGKSTLl~ 388 (595)
T 2yl4_A 373 TALVGPSGSGKSTVLS 388 (595)
T ss_dssp EEEECCTTSSSTHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4579999999984443
No 104
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=42.19 E-value=6.2 Score=29.36 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=11.0
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=++|.||+|||=
T Consensus 30 i~l~G~~GsGKST 42 (246)
T 2bbw_A 30 AVILGPPGSGKGT 42 (246)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5678999999984
No 105
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=41.91 E-value=6.4 Score=26.58 Aligned_cols=12 Identities=58% Similarity=0.794 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 7 i~v~G~~~~GKS 18 (189)
T 4dsu_A 7 LVVVGADGVGKS 18 (189)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999996
No 106
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=41.82 E-value=6.4 Score=28.24 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=15.8
Q ss_pred ccccccceeeeeccCCCceeEEE
Q psy13769 102 QVAKFNDLRFVGRSGRGKSFTLS 124 (155)
Q Consensus 102 qvA~FNDLRFvGRSGRGKsftlt 124 (155)
.+.+=.=.=++|.||.|||..+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHH
Confidence 34444445689999999986543
No 107
>1hlc_A Human lectin; HET: GAL BGC; 2.90A {Homo sapiens} SCOP: b.29.1.3
Probab=41.70 E-value=15 Score=26.31 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=16.6
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
+|+.|.|+|.+.- ..+||.|||
T Consensus 75 ~G~~F~l~i~~~~---------~~f~V~vng 96 (129)
T 1hlc_A 75 PGSEVKFTVTFES---------DKFKVKLPD 96 (129)
T ss_dssp TTSEEEEEEECCT---------TEEEEECTT
T ss_pred CCCeEEEEEEECC---------cEEEEEECC
Confidence 6999999998763 356677776
No 108
>2wsu_A Putative fiber protein; viral protein, carbohydrate recognition domain, tandem-repea; 1.90A {Porcine adenovirus 4} PDB: 2wsv_A* 2wt0_A* 2wt1_A* 2wt2_A*
Probab=41.70 E-value=60 Score=26.97 Aligned_cols=14 Identities=43% Similarity=0.665 Sum_probs=11.4
Q ss_pred CCceeEEEEEEecC
Q psy13769 117 RGKSFTLSIMVGSS 130 (155)
Q Consensus 117 RGKsftltItv~t~ 130 (155)
+|+.|.|+|.+.-.
T Consensus 112 ~G~~F~l~I~~~~~ 125 (343)
T 2wsu_A 112 REKPFVLVIVIQSD 125 (343)
T ss_dssp TTCEEEEEEEECSS
T ss_pred CCCcEEEEEEEcCC
Confidence 69999999987643
No 109
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=41.62 E-value=6.2 Score=29.92 Aligned_cols=11 Identities=64% Similarity=1.023 Sum_probs=9.9
Q ss_pred eeeeccCCCce
Q psy13769 110 RFVGRSGRGKS 120 (155)
Q Consensus 110 RFvGRSGRGKs 120 (155)
=+||++|.|||
T Consensus 25 ~lvG~~g~GKS 35 (247)
T 3lxw_A 25 ILVGRTGAGKS 35 (247)
T ss_dssp EEESSTTSSHH
T ss_pred EEECCCCCcHH
Confidence 48999999997
No 110
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A 2l5n_A
Probab=41.22 E-value=34 Score=24.07 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=24.9
Q ss_pred CceeEEEEEEecCCcee--eeeeeeeEEeeeCCCC
Q psy13769 118 GKSFTLSIMVGSSPHQI--ASYNKAIKVTVDGPRE 150 (155)
Q Consensus 118 GKsftltItv~t~Ppqv--aty~~AIKVTVDGPRe 150 (155)
-.+|++-|.+.--|... .+=-..++|+|.|||.
T Consensus 2 e~tytVPv~~~Nlp~~~~v~~~~~tV~V~v~G~r~ 36 (90)
T 3lyw_A 2 DPTLTLSLIAKNTPANSMIMTKLPSVRVKTEGYNP 36 (90)
T ss_dssp CCEEEEEEEEESCCTTEEECSCCCEEEEEEEECCT
T ss_pred CceEEeeEEEeeCCCCcEEecCCCEEEEEEEecCc
Confidence 46888888888777643 3444689999999994
No 111
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=41.21 E-value=6.8 Score=25.96 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 9 i~v~G~~~~GKs 20 (170)
T 1z08_A 9 VVLLGEGCVGKT 20 (170)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECcCCCCHH
Confidence 458999999997
No 112
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=40.87 E-value=7 Score=29.79 Aligned_cols=13 Identities=38% Similarity=0.322 Sum_probs=10.2
Q ss_pred eeeeccCCCceeE
Q psy13769 110 RFVGRSGRGKSFT 122 (155)
Q Consensus 110 RFvGRSGRGKsft 122 (155)
=++|+||.|||--
T Consensus 39 ~i~G~~G~GKTTl 51 (296)
T 1cr0_A 39 MVTSGSGMGKSTF 51 (296)
T ss_dssp EEEESTTSSHHHH
T ss_pred EEEeCCCCCHHHH
Confidence 3679999999843
No 113
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=40.69 E-value=7 Score=31.37 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=11.8
Q ss_pred eeeeeccCCCceeEEE
Q psy13769 109 LRFVGRSGRGKSFTLS 124 (155)
Q Consensus 109 LRFvGRSGRGKsftlt 124 (155)
+=++|.||+|||=-|.
T Consensus 67 ~~i~G~NGsGKSTLlk 82 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLLM 82 (290)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCcHHHHHH
Confidence 4468999999984443
No 114
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=40.63 E-value=7.2 Score=28.28 Aligned_cols=13 Identities=38% Similarity=0.401 Sum_probs=10.8
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=++|.||+|||-
T Consensus 25 i~i~G~~GsGKst 37 (201)
T 1rz3_A 25 LGIDGLSRSGKTT 37 (201)
T ss_dssp EEEEECTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5578999999985
No 115
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=40.61 E-value=6.8 Score=30.20 Aligned_cols=12 Identities=50% Similarity=0.872 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.||.|||
T Consensus 22 ivl~GPSGaGKs 33 (197)
T 3ney_A 22 LVLIGASGVGRS 33 (197)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 457899999996
No 116
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=40.50 E-value=7.4 Score=25.69 Aligned_cols=12 Identities=50% Similarity=0.855 Sum_probs=10.1
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 6 i~v~G~~~~GKs 17 (170)
T 1g16_A 6 ILLIGDSGVGKS 17 (170)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 458999999986
No 117
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=40.36 E-value=6.8 Score=30.93 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=12.7
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=.+|.||+|||=-|.+
T Consensus 33 ~~i~G~NGsGKSTLlk~ 49 (263)
T 2pjz_A 33 VIILGPNGSGKTTLLRA 49 (263)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34689999999955544
No 118
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=40.31 E-value=7.2 Score=30.91 Aligned_cols=11 Identities=64% Similarity=0.830 Sum_probs=10.0
Q ss_pred eeeeccCCCce
Q psy13769 110 RFVGRSGRGKS 120 (155)
Q Consensus 110 RFvGRSGRGKs 120 (155)
=++|+||.|||
T Consensus 22 ~lvG~nG~GKS 32 (301)
T 2qnr_A 22 MVVGESGLGKS 32 (301)
T ss_dssp EEEEETTSSHH
T ss_pred EEECCCCCCHH
Confidence 57999999998
No 119
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=40.14 E-value=7.1 Score=25.67 Aligned_cols=12 Identities=50% Similarity=0.708 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 9 i~v~G~~~~GKs 20 (170)
T 1r2q_A 9 LVLLGESAVGKS 20 (170)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999997
No 120
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=39.93 E-value=7.1 Score=26.89 Aligned_cols=12 Identities=42% Similarity=0.551 Sum_probs=9.7
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=+.|-||+|||
T Consensus 6 i~l~G~~GsGKS 17 (178)
T 1qhx_A 6 IILNGGSSAGKS 17 (178)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 447899999986
No 121
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=39.88 E-value=7.6 Score=25.84 Aligned_cols=12 Identities=42% Similarity=0.769 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 17 i~v~G~~~~GKs 28 (179)
T 2y8e_A 17 LVFLGEQSVGKT 28 (179)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999996
No 122
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=39.86 E-value=7.9 Score=33.66 Aligned_cols=14 Identities=36% Similarity=0.710 Sum_probs=11.5
Q ss_pred ceeeeeccCCCcee
Q psy13769 108 DLRFVGRSGRGKSF 121 (155)
Q Consensus 108 DLRFvGRSGRGKsf 121 (155)
=+=.||+||+|||=
T Consensus 383 ~~~ivG~sGsGKST 396 (598)
T 3qf4_B 383 KVALVGPTGSGKTT 396 (598)
T ss_dssp EEEEECCTTSSTTH
T ss_pred EEEEECCCCCcHHH
Confidence 45679999999984
No 123
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=39.80 E-value=7.3 Score=33.57 Aligned_cols=18 Identities=50% Similarity=0.732 Sum_probs=13.2
Q ss_pred ceeeeeccCCCceeEEEE
Q psy13769 108 DLRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 108 DLRFvGRSGRGKsftltI 125 (155)
=+=.+|+||+|||=-+.+
T Consensus 371 ~~~ivG~sGsGKSTLl~~ 388 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASL 388 (582)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 356799999999844433
No 124
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=39.68 E-value=7.8 Score=27.54 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=11.2
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
-+=++|.+|.|||
T Consensus 32 ~i~i~G~~g~GKT 44 (221)
T 2wsm_A 32 AVNIMGAIGSGKT 44 (221)
T ss_dssp EEEEEECTTSCHH
T ss_pred EEEEEcCCCCCHH
Confidence 4669999999997
No 125
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=39.48 E-value=7.1 Score=31.46 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=11.8
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+=++|.||.|||=++
T Consensus 105 i~lvG~nGsGKTTll 119 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTI 119 (304)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 448999999998544
No 126
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=39.41 E-value=7.6 Score=25.91 Aligned_cols=12 Identities=58% Similarity=0.861 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 12 i~v~G~~~~GKs 23 (181)
T 3tw8_B 12 LLIIGDSGVGKS 23 (181)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECCCCCCHH
Confidence 558999999996
No 127
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=39.29 E-value=7.4 Score=25.81 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 10 i~v~G~~~~GKs 21 (171)
T 1upt_A 10 ILILGLDGAGKT 21 (171)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558999999987
No 128
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=39.08 E-value=7.5 Score=26.03 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 10 i~v~G~~~~GKS 21 (177)
T 1wms_A 10 VILLGDGGVGKS 21 (177)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 129
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=39.06 E-value=7.5 Score=26.67 Aligned_cols=12 Identities=58% Similarity=0.792 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 24 i~vvG~~~~GKS 35 (190)
T 3con_A 24 LVVVGAGGVGKS 35 (190)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 568999999997
No 130
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=38.91 E-value=7.9 Score=27.71 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=9.2
Q ss_pred eeeeccCCCce
Q psy13769 110 RFVGRSGRGKS 120 (155)
Q Consensus 110 RFvGRSGRGKs 120 (155)
=.+|.||+|||
T Consensus 25 ~i~G~~GsGKS 35 (207)
T 2qt1_A 25 GISGVTNSGKT 35 (207)
T ss_dssp EEEESTTSSHH
T ss_pred EEECCCCCCHH
Confidence 36789999997
No 131
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=38.83 E-value=7.6 Score=26.08 Aligned_cols=12 Identities=50% Similarity=0.830 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 13 i~v~G~~~~GKs 24 (180)
T 2g6b_A 13 VMLVGDSGVGKT 24 (180)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 458999999997
No 132
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=38.81 E-value=7.4 Score=32.98 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=15.1
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=.+|.||+|||=-|.+-.--.+|
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEcCCCchHHHHHHHHhcCCCC
Confidence 346899999999544433333344
No 133
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=38.52 E-value=7.5 Score=33.10 Aligned_cols=12 Identities=58% Similarity=0.700 Sum_probs=10.6
Q ss_pred eeeeccCCCcee
Q psy13769 110 RFVGRSGRGKSF 121 (155)
Q Consensus 110 RFvGRSGRGKsf 121 (155)
=++|+||.|||=
T Consensus 35 ~lvG~sGaGKST 46 (418)
T 2qag_C 35 MVVGESGLGKST 46 (418)
T ss_dssp EEECCTTSSHHH
T ss_pred EEECCCCCcHHH
Confidence 689999999983
No 134
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=38.23 E-value=8.3 Score=26.81 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=10.8
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 19 i~ivG~~~vGKS 30 (181)
T 1fzq_A 19 ILLLGLDNAGKT 30 (181)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 668999999997
No 135
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=38.15 E-value=5.9 Score=31.71 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=12.4
Q ss_pred cceeeeeccCCCceeE
Q psy13769 107 NDLRFVGRSGRGKSFT 122 (155)
Q Consensus 107 NDLRFvGRSGRGKsft 122 (155)
.-+-++|.||+|||=-
T Consensus 171 ~k~~IvG~nGsGKSTL 186 (365)
T 1lw7_A 171 KTVAILGGESSGKSVL 186 (365)
T ss_dssp EEEEEECCTTSHHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3456789999999843
No 136
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=38.12 E-value=8.6 Score=27.21 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=13.3
Q ss_pred cceeeeeccCCCceeE
Q psy13769 107 NDLRFVGRSGRGKSFT 122 (155)
Q Consensus 107 NDLRFvGRSGRGKsft 122 (155)
.-+=+.|-+|.||+.-
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5688999999999753
No 137
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=38.08 E-value=7.8 Score=28.23 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=11.5
Q ss_pred eeeeeccCCCceeE
Q psy13769 109 LRFVGRSGRGKSFT 122 (155)
Q Consensus 109 LRFvGRSGRGKsft 122 (155)
+-++|.+|.|||=-
T Consensus 36 v~L~G~nGaGKTTL 49 (158)
T 1htw_A 36 VYLNGDLGAGKTTL 49 (158)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56899999999843
No 138
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=38.00 E-value=8.3 Score=27.40 Aligned_cols=12 Identities=42% Similarity=0.744 Sum_probs=10.8
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 28 i~lvG~~~vGKS 39 (198)
T 1f6b_A 28 LVFLGLDNAGKT 39 (198)
T ss_dssp EEEEEETTSSHH
T ss_pred EEEECCCCCCHH
Confidence 669999999997
No 139
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=37.93 E-value=8.5 Score=26.06 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=10.2
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 9 i~~~G~~~~GKS 20 (181)
T 3t5g_A 9 IAILGYRSVGKS 20 (181)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 448999999997
No 140
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=37.86 E-value=8 Score=26.00 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 8 i~~~G~~~~GKs 19 (186)
T 1mh1_A 8 CVVVGDGAVGKT 19 (186)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999998
No 141
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=37.85 E-value=8.8 Score=26.31 Aligned_cols=12 Identities=50% Similarity=0.783 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 26 i~v~G~~~~GKS 37 (195)
T 1svi_A 26 IALAGRSNVGKS 37 (195)
T ss_dssp EEEEEBTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558999999997
No 142
>3t7h_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, ligase; 1.60A {Saccharomyces cerevisiae} PDB: 3t7f_A 3t7g_A 3ruj_A 4gsj_A*
Probab=37.84 E-value=78 Score=25.99 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=41.7
Q ss_pred eEEEEeecC-CCccchhcchhhhhhhcccccccceeeee-ccCCCceeEEEEEEecC
Q psy13769 76 TIVTIRAGN-DDNYCGELRNCTAVVKNQVAKFNDLRFVG-RSGRGKSFTLSIMVGSS 130 (155)
Q Consensus 76 T~Vtv~AGN-DEn~~aELRN~tavmknqvA~FNDLRFvG-RSGRGKsftltItv~t~ 130 (155)
+.+-+-..| +++..--|||..+.+..+.-++++++++. |...| |+.++|.+...
T Consensus 204 ~~~f~Dps~~~~~PGWpLRNlL~ll~~~~~~~~~v~vlc~Rd~~~-S~i~~l~l~~~ 259 (291)
T 3t7h_A 204 VLAIRDTSTMENVPSALTKNFLSVLQYDVPDLIDFKLLIIRQNEG-SFALNATFASI 259 (291)
T ss_dssp EEEEECCBCSTTCCBTTHHHHHHHHHHHCTTCCEEEEEEECSSSC-CEEEEEEEEEC
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHhccCCceEEEEEEeCCCC-cEEEEEEcccc
Confidence 445555666 67889999999999986677788999888 76555 99988887653
No 143
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=37.82 E-value=8.1 Score=28.69 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+-|+|-+|+|||
T Consensus 23 i~i~G~~GsGKS 34 (230)
T 2vp4_A 23 VLIEGNIGSGKT 34 (230)
T ss_dssp EEEECSTTSCHH
T ss_pred EEEECCCCCCHH
Confidence 568899999998
No 144
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=37.70 E-value=8.2 Score=27.52 Aligned_cols=13 Identities=46% Similarity=0.639 Sum_probs=11.0
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=++|-||+|||-
T Consensus 21 I~l~G~~GsGKST 33 (202)
T 3t61_A 21 IVVMGVSGSGKSS 33 (202)
T ss_dssp EEEECSTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 5678999999983
No 145
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=37.66 E-value=8.2 Score=25.88 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 9 i~v~G~~~~GKs 20 (178)
T 2hxs_A 9 IVVLGDGASGKT 20 (178)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 558999999997
No 146
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=37.61 E-value=8.1 Score=26.87 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=10.1
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|-+|+|||
T Consensus 8 i~l~G~~GsGKs 19 (185)
T 3trf_A 8 IYLIGLMGAGKT 19 (185)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 447899999997
No 147
>3i8t_A Galectin-4; S-type lectin, carbohydrate binding, molecular recognition, sugar binding protein; HET: LBT; 2.10A {Mus musculus} PDB: 2dyc_A
Probab=37.54 E-value=26 Score=26.44 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=16.8
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDG 147 (155)
+|+.|.|+|.+.- ..+||.|+|
T Consensus 109 ~G~~F~l~I~~~~---------~~f~V~VNg 130 (164)
T 3i8t_A 109 KGKHFELVFMVMP---------EHYKVVVNG 130 (164)
T ss_dssp TTCEEEEEEEECS---------SEEEEEETT
T ss_pred CCCEEEEEEEEcC---------CEEEEEECC
Confidence 7999999998764 456666666
No 148
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=37.50 E-value=8.2 Score=25.44 Aligned_cols=12 Identities=42% Similarity=0.772 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 9 i~v~G~~~~GKS 20 (170)
T 1z0j_A 9 VCLLGDTGVGKS 20 (170)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 558999999997
No 149
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=37.37 E-value=8.1 Score=28.87 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=11.2
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+=++|.||+|||-.+
T Consensus 28 igI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 28 IGVSGGTASGKSTVC 42 (245)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 446789999998443
No 150
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=37.17 E-value=8.2 Score=33.27 Aligned_cols=18 Identities=44% Similarity=0.708 Sum_probs=13.0
Q ss_pred ceeeeeccCCCceeEEEE
Q psy13769 108 DLRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 108 DLRFvGRSGRGKsftltI 125 (155)
=+=.+|.||+|||=-+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~ 388 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANL 388 (582)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 355789999999844433
No 151
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=37.16 E-value=8.5 Score=27.02 Aligned_cols=12 Identities=42% Similarity=0.617 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 23 i~ivG~~~vGKS 34 (184)
T 3ihw_A 23 VGIVGNLSSGKS 34 (184)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECCCCCCHH
Confidence 558999999997
No 152
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=37.14 E-value=8.2 Score=33.55 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=12.0
Q ss_pred ceeeeeccCCCceeE
Q psy13769 108 DLRFVGRSGRGKSFT 122 (155)
Q Consensus 108 DLRFvGRSGRGKsft 122 (155)
=+=.||+||+|||=-
T Consensus 371 ~~~ivG~sGsGKSTl 385 (587)
T 3qf4_A 371 LVAVLGETGSGKSTL 385 (587)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 456799999999843
No 153
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=37.04 E-value=8.5 Score=25.86 Aligned_cols=12 Identities=42% Similarity=0.559 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 10 i~v~G~~~~GKS 21 (208)
T 3clv_A 10 TVLLGESSVGKS 21 (208)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558999999997
No 154
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=37.01 E-value=8.2 Score=31.87 Aligned_cols=11 Identities=55% Similarity=0.785 Sum_probs=9.9
Q ss_pred eeeeccCCCce
Q psy13769 110 RFVGRSGRGKS 120 (155)
Q Consensus 110 RFvGRSGRGKs 120 (155)
=++|+||.|||
T Consensus 184 aivG~~gvGKS 194 (439)
T 1mky_A 184 AIVGRPNVGKS 194 (439)
T ss_dssp EEECSTTSSHH
T ss_pred EEECCCCCCHH
Confidence 38999999998
No 155
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=36.90 E-value=8.7 Score=26.60 Aligned_cols=13 Identities=38% Similarity=0.695 Sum_probs=11.0
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
.+=++|.+|.|||
T Consensus 10 ki~v~G~~~~GKS 22 (207)
T 1vg8_A 10 KVIILGDSGVGKT 22 (207)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 3668999999997
No 156
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=36.85 E-value=8.5 Score=25.87 Aligned_cols=12 Identities=42% Similarity=0.659 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 14 i~v~G~~~~GKS 25 (195)
T 3bc1_A 14 FLALGDSGVGKT 25 (195)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999998
No 157
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=36.73 E-value=8.6 Score=26.89 Aligned_cols=13 Identities=38% Similarity=0.613 Sum_probs=10.5
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+-++|-+|+|||-
T Consensus 8 i~l~G~~GsGKST 20 (179)
T 2pez_A 8 VWLTGLSGAGKTT 20 (179)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4578999999973
No 158
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=36.72 E-value=8.6 Score=25.65 Aligned_cols=13 Identities=38% Similarity=0.695 Sum_probs=11.0
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
-+=++|.+|.|||
T Consensus 10 ~i~v~G~~~~GKS 22 (182)
T 1ky3_A 10 KVIILGDSGVGKT 22 (182)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3668999999997
No 159
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=36.65 E-value=8.4 Score=33.27 Aligned_cols=14 Identities=57% Similarity=0.812 Sum_probs=11.5
Q ss_pred ceeeeeccCCCcee
Q psy13769 108 DLRFVGRSGRGKSF 121 (155)
Q Consensus 108 DLRFvGRSGRGKsf 121 (155)
=+=.+|.||+|||=
T Consensus 369 ~~~ivG~sGsGKST 382 (578)
T 4a82_A 369 TVAFVGMSGGGKST 382 (578)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCChHHH
Confidence 45679999999984
No 160
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=36.47 E-value=8.9 Score=27.57 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=11.1
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
=+=++|-||+|||
T Consensus 27 ~i~l~G~~GsGKs 39 (199)
T 3vaa_A 27 RIFLTGYMGAGKT 39 (199)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEEcCCCCCHH
Confidence 3668999999998
No 161
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin variable domain-like beta-sandwich, homodimer, immune system; 2.00A {Mus musculus} SCOP: b.1.1.1
Probab=36.45 E-value=51 Score=21.26 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=15.4
Q ss_pred eeeccCCCceeEEEEEEecCCceeeeeeeee
Q psy13769 111 FVGRSGRGKSFTLSIMVGSSPHQIASYNKAI 141 (155)
Q Consensus 111 FvGRSGRGKsftltItv~t~Ppqvaty~~AI 141 (155)
|-+|-..+ +|+|+|+- ..+-.-|+|-=|+
T Consensus 66 ~~~~~~~~-~~~L~I~~-~~~~Dsg~Y~C~~ 94 (117)
T 1dqt_A 66 CSGTFNES-RVNLTIQG-LRAVDTGLYLCKV 94 (117)
T ss_dssp EEEEEETT-EEEEEECS-CCGGGCEEEEEEE
T ss_pred EecccCCC-EEEEEEeC-CCcccCEEEEEEE
Confidence 55543333 68888753 2344555555444
No 162
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=36.36 E-value=9.2 Score=25.83 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 21 i~v~G~~~~GKs 32 (183)
T 1moz_A 21 ILILGLDGAGKT 32 (183)
T ss_dssp EEEEEETTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558999999997
No 163
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=36.10 E-value=8.7 Score=32.33 Aligned_cols=13 Identities=54% Similarity=0.685 Sum_probs=11.3
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=|+|.||.|||=
T Consensus 218 ~~lvG~sG~GKST 230 (358)
T 2rcn_A 218 SIFAGQSGVGKSS 230 (358)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCccHHH
Confidence 5689999999994
No 164
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=36.05 E-value=8.7 Score=32.14 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=15.5
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||+|||=.|.+-.--.+|
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCcHHHHHHHHHHcCCCC
Confidence 447899999999655443333333
No 165
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=35.89 E-value=6 Score=33.74 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=20.8
Q ss_pred cCCCccccCCCCCcceE---EEEeecCC
Q psy13769 49 VLPTHWRSNKSLPIAFK---VVVLDDVM 73 (155)
Q Consensus 49 ~LP~HWRsNKtLP~~Fk---VvaL~~Vp 73 (155)
-.|+||||.+||..-+| |+++..|-
T Consensus 86 ~~~s~~~~~~~l~~~l~~~~i~gi~giD 113 (379)
T 1a9x_B 86 LIASNFRNTEDLSSYLKRHNIVAIADID 113 (379)
T ss_dssp SCCCCTTCCSCHHHHHHHTTCEEEESSC
T ss_pred CCCCcccccCCHHHHHHHCCCccccCCC
Confidence 46999999999987774 88888764
No 166
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=42.15 E-value=7.7 Score=27.23 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=20.5
Q ss_pred hhcchhhhhhhccccccccee--eeeccCCCcee
Q psy13769 90 GELRNCTAVVKNQVAKFNDLR--FVGRSGRGKSF 121 (155)
Q Consensus 90 aELRN~tavmknqvA~FNDLR--FvGRSGRGKsf 121 (155)
.-|+.....|.++.-.=..++ ++|.+|.|||=
T Consensus 12 ~~~~~~~~~m~~~~~~~~~~ki~v~G~~~~GKSs 45 (204)
T 3th5_A 12 SGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTC 45 (204)
Confidence 345555566666644333344 78999999983
No 167
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=35.87 E-value=8.8 Score=32.10 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=15.8
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||+|||=.|.+-.--.+|
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEcCCCchHHHHHHHHHCCCCC
Confidence 346899999999665543333344
No 168
>4agr_A Galectin; sugar binding protein; 2.10A {Cinachyrella} PDB: 4agg_A 4agv_A
Probab=35.78 E-value=32 Score=26.04 Aligned_cols=18 Identities=22% Similarity=0.073 Sum_probs=13.0
Q ss_pred ecCCCCeEEEEeecCCCc
Q psy13769 70 DDVMDGTIVTIRAGNDDN 87 (155)
Q Consensus 70 ~~VpDGT~Vtv~AGNDEn 87 (155)
--.||...++|.-+||.+
T Consensus 21 ~~~P~~~rf~inl~~~~~ 38 (146)
T 4agr_A 21 YRSPDKGRVSLYLYNDGE 38 (146)
T ss_dssp EECCSSEEEEEEEECTTC
T ss_pred ecCCCCCEEEEEcCCCCC
Confidence 446888888888777654
No 169
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=35.76 E-value=8.9 Score=26.46 Aligned_cols=13 Identities=38% Similarity=0.782 Sum_probs=11.1
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
.+=++|.+|.|||
T Consensus 27 ki~v~G~~~~GKS 39 (193)
T 2oil_A 27 KVVLIGESGVGKT 39 (193)
T ss_dssp EEEEESSTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 3568999999997
No 170
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=35.67 E-value=9.5 Score=29.08 Aligned_cols=12 Identities=67% Similarity=0.872 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=+||++|.|||
T Consensus 11 I~vvG~~g~GKS 22 (274)
T 3t5d_A 11 LMVVGESGLGKS 22 (274)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 457999999997
No 171
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=35.66 E-value=9.1 Score=27.23 Aligned_cols=12 Identities=58% Similarity=0.869 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 26 i~vvG~~~vGKS 37 (195)
T 3cbq_A 26 VMLVGESGVGKS 37 (195)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999996
No 172
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=35.65 E-value=9.1 Score=30.86 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=11.3
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+=.+|.||+|||=.+
T Consensus 93 vgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 93 IGVAGSVAVGKSTTA 107 (312)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCchHHHHH
Confidence 346789999998543
No 173
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=35.38 E-value=9.3 Score=26.25 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 51 i~vvG~~g~GKS 62 (193)
T 2ged_A 51 IIIAGPQNSGKT 62 (193)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999997
No 174
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=35.21 E-value=9.4 Score=25.39 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 18 i~v~G~~~~GKS 29 (179)
T 1z0f_A 18 YIIIGDMGVGKS 29 (179)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 668999999997
No 175
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=35.16 E-value=9.6 Score=31.76 Aligned_cols=12 Identities=50% Similarity=0.703 Sum_probs=11.0
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=|.|.||.|||
T Consensus 147 vl~~G~sG~GKS 158 (314)
T 1ko7_A 147 VLITGDSGIGKS 158 (314)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEEeCCCCCHH
Confidence 679999999998
No 176
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=35.09 E-value=9.5 Score=25.54 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 11 i~v~G~~~~GKs 22 (178)
T 2lkc_A 11 VTIMGHVDHGKT 22 (178)
T ss_dssp EEEESCTTTTHH
T ss_pred EEEECCCCCCHH
Confidence 558999999997
No 177
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=35.07 E-value=9.5 Score=25.65 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 11 i~v~G~~~~GKs 22 (182)
T 3bwd_D 11 CVTVGDGAVGKT 22 (182)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 178
>1yhp_A Ddcad-1, GP24, calcium-dependent cell adhesion molecule-1; NMR {Dictyostelium discoideum} PDB: 2b1o_A
Probab=35.00 E-value=33 Score=27.99 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=24.8
Q ss_pred cccccccceeeeecc-CCCceeEEEEEEecCCce
Q psy13769 101 NQVAKFNDLRFVGRS-GRGKSFTLSIMVGSSPHQ 133 (155)
Q Consensus 101 nqvA~FNDLRFvGRS-GRGKsftltItv~t~Ppq 133 (155)
+...-.=|+||++-. +-.|+|.|||......|.
T Consensus 93 ~~~~~~i~ir~~~~~~~~~~~Y~lti~p~~~~~v 126 (212)
T 1yhp_A 93 GAFQWAVDVKIVNKVNSTAGSYEMTITPYQVDKV 126 (212)
T ss_dssp SSCSEEEEEEEEESSCSSCTTEEEEEEETTCCCE
T ss_pred CcceEEEEEEEEcCCCCCCceEEEEEeeeecCCE
Confidence 333334499999985 999999999999765443
No 179
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=34.77 E-value=9.6 Score=26.28 Aligned_cols=12 Identities=33% Similarity=0.606 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 23 i~v~G~~~~GKS 34 (189)
T 1z06_A 23 IIVIGDSNVGKT 34 (189)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 180
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=34.77 E-value=9.4 Score=31.95 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=15.3
Q ss_pred eeeeccCCCceeEEEEEEecCCc
Q psy13769 110 RFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 110 RFvGRSGRGKsftltItv~t~Pp 132 (155)
=.+|.||+|||=.|.+-.--.+|
T Consensus 45 ~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 45 GLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp EEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEECCCCCcHHHHHHHHhCCCCC
Confidence 46899999999665543333344
No 181
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=34.75 E-value=10 Score=28.09 Aligned_cols=12 Identities=50% Similarity=0.971 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|++|.|||
T Consensus 25 I~lvG~~g~GKS 36 (260)
T 2xtp_A 25 IILVGKTGTGKS 36 (260)
T ss_dssp EEEEECTTSCHH
T ss_pred EEEECCCCCCHH
Confidence 568999999998
No 182
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=34.73 E-value=9.5 Score=28.98 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=10.8
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|-||+|||
T Consensus 30 I~I~G~~GsGKS 41 (252)
T 4e22_A 30 ITVDGPSGAGKG 41 (252)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 668999999998
No 183
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=34.72 E-value=10 Score=26.66 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 26 i~~vG~~~vGKS 37 (190)
T 1m2o_B 26 LLFLGLDNAGKT 37 (190)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 569999999997
No 184
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=34.70 E-value=11 Score=29.63 Aligned_cols=12 Identities=50% Similarity=0.764 Sum_probs=10.2
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
.=++|.+|.|||
T Consensus 27 ~~i~G~NGsGKS 38 (322)
T 1e69_A 27 TAIVGPNGSGKS 38 (322)
T ss_dssp EEEECCTTTCST
T ss_pred EEEECCCCCcHH
Confidence 357999999997
No 185
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=34.62 E-value=9.5 Score=31.93 Aligned_cols=24 Identities=33% Similarity=0.474 Sum_probs=15.8
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||+|||=.|.+-.--.+|
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCchHHHHHHHHhcCCCC
Confidence 446899999999665543333344
No 186
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=34.58 E-value=9.7 Score=25.50 Aligned_cols=12 Identities=50% Similarity=0.772 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 21 i~v~G~~~~GKS 32 (187)
T 2a9k_A 21 VIMVGSGGVGKS 32 (187)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 187
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=34.56 E-value=9.5 Score=32.04 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=15.2
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||+|||=.|.+-.--.+|
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCChHHHHHHHHHcCCCC
Confidence 346899999999655443333333
No 188
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=34.52 E-value=9.8 Score=25.81 Aligned_cols=12 Identities=58% Similarity=0.800 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 21 i~v~G~~~~GKS 32 (183)
T 3kkq_A 21 LVVVGDGGVGKS 32 (183)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999996
No 189
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=34.47 E-value=10 Score=26.58 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 27 i~vvG~~~~GKS 38 (201)
T 3oes_A 27 VVILGYRCVGKT 38 (201)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCcCHH
Confidence 458999999996
No 190
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=34.34 E-value=9.9 Score=25.72 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=10.2
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 17 i~vvG~~~~GKs 28 (198)
T 3t1o_A 17 IVYYGPGLSGKT 28 (198)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 448999999996
No 191
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=34.32 E-value=9.9 Score=30.75 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=10.8
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=++|++|.|||=
T Consensus 58 v~i~G~~GaGKST 70 (337)
T 2qm8_A 58 VGITGVPGVGKST 70 (337)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 5588999999973
No 192
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=34.24 E-value=11 Score=25.53 Aligned_cols=12 Identities=67% Similarity=0.985 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 26 i~v~G~~~~GKS 37 (195)
T 3pqc_A 26 VAFVGRSNVGKS 37 (195)
T ss_dssp EEEEEBTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 193
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=34.00 E-value=10 Score=32.03 Aligned_cols=15 Identities=47% Similarity=0.806 Sum_probs=11.8
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+=++|.||+|||=.|
T Consensus 50 ~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLL 64 (390)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCChHHHHH
Confidence 457899999998544
No 194
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=33.91 E-value=11 Score=26.13 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=9.7
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|-+|+|||
T Consensus 8 I~l~G~~GsGKS 19 (193)
T 2rhm_A 8 IIVTGHPATGKT 19 (193)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 457889999987
No 195
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=33.81 E-value=10 Score=26.78 Aligned_cols=12 Identities=33% Similarity=0.786 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 14 i~vvG~~~~GKS 25 (218)
T 4djt_A 14 ICLIGDGGVGKT 25 (218)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 448999999997
No 196
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=33.74 E-value=11 Score=29.76 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=11.7
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+=++|.||+|||-.+
T Consensus 83 igI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTA 97 (308)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 457889999998544
No 197
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=33.69 E-value=11 Score=28.10 Aligned_cols=12 Identities=42% Similarity=0.648 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|++|.|||
T Consensus 29 i~vvG~~~~GKS 40 (299)
T 2aka_B 29 IAVVGGQSAGKS 40 (299)
T ss_dssp EEEEEBTTSCHH
T ss_pred EEEEeCCCCCHH
Confidence 558999999998
No 198
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=33.50 E-value=11 Score=25.36 Aligned_cols=12 Identities=50% Similarity=0.808 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 15 i~v~G~~~~GKS 26 (181)
T 2efe_B 15 LVLLGDVGAGKS 26 (181)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECcCCCCHH
Confidence 568999999997
No 199
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=33.36 E-value=11 Score=29.91 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=|.|.||.|||
T Consensus 19 vli~G~SGaGKS 30 (181)
T 3tqf_A 19 VLITGEANIGKS 30 (181)
T ss_dssp EEEEESSSSSHH
T ss_pred EEEEcCCCCCHH
Confidence 458999999999
No 200
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=33.20 E-value=16 Score=24.14 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=18.8
Q ss_pred hcchhhhhhhcccccccceeeeeccCCCceeE
Q psy13769 91 ELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFT 122 (155)
Q Consensus 91 ELRN~tavmknqvA~FNDLRFvGRSGRGKsft 122 (155)
+++.....+++. .-.-+=+.|-+|.||+.-
T Consensus 30 ~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 30 EIRRTIQVLQRR--TKNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp HHHHHHHHHTSS--SSCEEEEECCTTSCHHHH
T ss_pred HHHHHHHHHhcC--CCCceEEECCCCCCHHHH
Confidence 444444444442 233477899999999864
No 201
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=33.20 E-value=11 Score=25.75 Aligned_cols=12 Identities=42% Similarity=0.639 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 11 i~vvG~~~~GKS 22 (199)
T 2gf0_A 11 VVVFGAGGVGKS 22 (199)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECCCCCcHH
Confidence 568999999997
No 202
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=33.15 E-value=18 Score=30.21 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=41.0
Q ss_pred CCcce---EEEEeecCCCCeEEEEeecCCCccchhcchhh-hhhhcccccccc
Q psy13769 60 LPIAF---KVVVLDDVMDGTIVTIRAGNDDNYCGELRNCT-AVVKNQVAKFND 108 (155)
Q Consensus 60 LP~~F---kVvaL~~VpDGT~Vtv~AGNDEn~~aELRN~t-avmknqvA~FND 108 (155)
-|.|| +++..+=+|||-.|++.+-+.-++-++|-|.. +.|++.-+.||=
T Consensus 68 APeP~DVGrlLqadi~~~G~k~t~~T~gpId~a~GL~~yVEaL~rk~~tEFNV 120 (230)
T 4dix_A 68 APEPFDVGRVLHADIIYDGHSLSLSTVGKIDPAAGLGSYVEALVRKHDVDFNV 120 (230)
T ss_dssp CCCGGGBTSEEEEEEEETTEEEEEEEEEEBBCCTTHHHHHHHHHTTSEEEEEE
T ss_pred cCCccccccEEEEEEecCCcEEEEEecCCCCCCchhHHHHHHHhhcCCCcEEE
Confidence 47788 56777778999999999999999999998875 678888888873
No 203
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=32.85 E-value=9.2 Score=33.64 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=11.5
Q ss_pred eeeeeccCCCceeE
Q psy13769 109 LRFVGRSGRGKSFT 122 (155)
Q Consensus 109 LRFvGRSGRGKsft 122 (155)
+=+||.||+|||=.
T Consensus 48 iaIvG~nGsGKSTL 61 (608)
T 3szr_A 48 IAVIGDQSSGKSSV 61 (608)
T ss_dssp EECCCCTTSCHHHH
T ss_pred EEEECCCCChHHHH
Confidence 56899999999843
No 204
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=32.75 E-value=11 Score=30.27 Aligned_cols=15 Identities=40% Similarity=0.694 Sum_probs=11.8
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+=++|.||.|||=++
T Consensus 103 i~lvG~nGsGKTTll 117 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 348999999998544
No 205
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=32.75 E-value=11 Score=26.13 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 26 i~~vG~~~~GKS 37 (194)
T 3reg_A 26 IVVVGDGAVGKT 37 (194)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 458999999996
No 206
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=32.53 E-value=11 Score=31.65 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=15.7
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||+|||=.|.+-.--.+|
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCchHHHHHHHHhcCCCC
Confidence 446899999999655443333344
No 207
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=32.48 E-value=9.1 Score=25.85 Aligned_cols=12 Identities=42% Similarity=0.642 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 10 i~~vG~~~vGKT 21 (178)
T 2iwr_A 10 LGVLGDARSGKS 21 (178)
T ss_dssp EEEECCGGGCHH
T ss_pred EEEECCCCCCHH
Confidence 458999999996
No 208
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=32.46 E-value=12 Score=26.80 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=13.9
Q ss_pred ccccccceeeeeccCCCceeE
Q psy13769 102 QVAKFNDLRFVGRSGRGKSFT 122 (155)
Q Consensus 102 qvA~FNDLRFvGRSGRGKsft 122 (155)
.+.+=.=.=+.|++|.|||.-
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl 39 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIF 39 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHH
Confidence 333333345789999999854
No 209
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=32.37 E-value=11 Score=25.73 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=10.1
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 20 i~v~G~~~~GKS 31 (199)
T 4bas_A 20 VVMCGLDNSGKT 31 (199)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECCCCCCHH
Confidence 448999999996
No 210
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=32.28 E-value=11 Score=27.26 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 32 I~vvG~~~vGKS 43 (228)
T 2qu8_A 32 IILSGAPNVGKS 43 (228)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999987
No 211
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=32.24 E-value=11 Score=25.92 Aligned_cols=12 Identities=50% Similarity=0.772 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 17 i~v~G~~~~GKS 28 (206)
T 2bov_A 17 VIMVGSGGVGKS 28 (206)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558999999997
No 212
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=32.23 E-value=11 Score=26.45 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=10.9
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+-++|-+|+|||-
T Consensus 16 i~l~G~~GsGKsT 28 (186)
T 2yvu_A 16 VWLTGLPGSGKTT 28 (186)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEEcCCCCCHHH
Confidence 5689999999973
No 213
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=32.21 E-value=11 Score=26.73 Aligned_cols=11 Identities=45% Similarity=0.887 Sum_probs=9.4
Q ss_pred eeeeccCCCce
Q psy13769 110 RFVGRSGRGKS 120 (155)
Q Consensus 110 RFvGRSGRGKs 120 (155)
=++|.+|.|||
T Consensus 27 ~I~G~NGsGKS 37 (149)
T 1f2t_A 27 LIIGQNGSGKS 37 (149)
T ss_dssp EEECCTTSSHH
T ss_pred EEECCCCCCHH
Confidence 36899999997
No 214
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=32.02 E-value=12 Score=25.76 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 10 i~v~G~~~vGKS 21 (184)
T 1m7b_A 10 IVVVGDSQCGKT 21 (184)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999996
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=31.96 E-value=21 Score=29.20 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=25.9
Q ss_pred eEEEEeecCCCccchhcchhhhhhhcccccccceeeeeccCCCce
Q psy13769 76 TIVTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKS 120 (155)
Q Consensus 76 T~Vtv~AGNDEn~~aELRN~tavmknqvA~FNDLRFvGRSGRGKs 120 (155)
..+.++|-+.++. .||++...-+..+ .+.=++|++|.|||
T Consensus 135 ~v~~iSA~~g~gi-~~L~~~l~~~~~~----~~i~~vG~~nvGKS 174 (368)
T 3h2y_A 135 DVFLISAAKGQGI-AELADAIEYYRGG----KDVYVVGCTNVGKS 174 (368)
T ss_dssp EEEECCTTTCTTH-HHHHHHHHHHHTT----SCEEEEEBTTSSHH
T ss_pred cEEEEeCCCCcCH-HHHHhhhhhhccc----ceEEEecCCCCChh
Confidence 3556677666653 4666555433222 36779999999997
No 216
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=31.86 E-value=12 Score=26.32 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=16.6
Q ss_pred chhcchhhhhhhcccccccceeeeeccCCCce
Q psy13769 89 CGELRNCTAVVKNQVAKFNDLRFVGRSGRGKS 120 (155)
Q Consensus 89 ~aELRN~tavmknqvA~FNDLRFvGRSGRGKs 120 (155)
+-+.+|..--|++.- | -+=++|.+|.|||
T Consensus 11 ~~~~~~~~~~m~~~~--~-ki~vvG~~~~GKS 39 (201)
T 2gco_A 11 SSGLVPRGSHMAAIR--K-KLVIVGDGACGKT 39 (201)
T ss_dssp CTTCCC-----CCEE--E-EEEEEESTTSSHH
T ss_pred cCCcccCCCCCcccc--e-EEEEECCCCCCHH
Confidence 445666666676542 2 2568999999998
No 217
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=31.82 E-value=11 Score=26.00 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=3.0
Q ss_pred eeeeeccCCCceeE
Q psy13769 109 LRFVGRSGRGKSFT 122 (155)
Q Consensus 109 LRFvGRSGRGKsft 122 (155)
+=++|.+|.|||=-
T Consensus 23 i~v~G~~~~GKssl 36 (208)
T 2yc2_C 23 VAVVGEATVGKSAL 36 (208)
T ss_dssp EEEC----------
T ss_pred EEEECCCCCCHHHH
Confidence 56899999999843
No 218
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=31.81 E-value=4.9 Score=32.02 Aligned_cols=14 Identities=43% Similarity=0.835 Sum_probs=11.2
Q ss_pred eeeeccCCCceeEE
Q psy13769 110 RFVGRSGRGKSFTL 123 (155)
Q Consensus 110 RFvGRSGRGKsftl 123 (155)
=++|.+|.|||=-|
T Consensus 64 ~lvG~NGaGKStLl 77 (415)
T 4aby_A 64 AFTGETGAGKSIIV 77 (415)
T ss_dssp EEEESHHHHHHHHT
T ss_pred EEECCCCCCHHHHH
Confidence 36899999998554
No 219
>3ksp_A Calcium/calmodulin-dependent kinase II associatio; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG; HET: MSE NHE; 2.59A {Exiguobacterium sibiricum 255-15}
Probab=31.77 E-value=7.3 Score=28.32 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=22.6
Q ss_pred ccchhcchhhhhhhcccccccceeeeeccCC
Q psy13769 87 NYCGELRNCTAVVKNQVAKFNDLRFVGRSGR 117 (155)
Q Consensus 87 n~~aELRN~tavmknqvA~FNDLRFvGRSGR 117 (155)
-+-|++|+-.+.|..-.+. ||.|+|.||+
T Consensus 18 ~~~A~~~~D~~~L~~LL~d--df~~v~~sG~ 46 (129)
T 3ksp_A 18 RHAYLMEGNREAMHQLLSS--DFSFIDGQGR 46 (129)
T ss_dssp HHHHHHHTCHHHHHHHEEE--EEEEECTTCC
T ss_pred HHHHHHhCCHHHHHhhcCC--CEEEECCCCC
Confidence 3456777777777777764 9999999997
No 220
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.66 E-value=52 Score=21.60 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=24.5
Q ss_pred CCceeEEEEEEecCCceeeeeeeeeEEeeeCCCCC
Q psy13769 117 RGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPREP 151 (155)
Q Consensus 117 RGKsftltItv~t~Ppqvaty~~AIKVTVDGPReP 151 (155)
-|++.+++|+.. |-++..|.+.|.|.+.|.-+|
T Consensus 68 pg~~~~i~V~f~--~~~~g~f~~~i~v~~~g~~~~ 100 (112)
T 2e6j_A 68 PSGVQAIQISFS--SIILGNFEEEFLVNVNGSPEP 100 (112)
T ss_dssp TTBCCEEEEEEC--CCCCEEEEEEECEEESSCSSC
T ss_pred CCCEEEEEEEEE--CCCcceEEEEEEEEECCCCce
Confidence 467666665554 457788999999999987655
No 221
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=31.50 E-value=12 Score=26.16 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 23 i~~vG~~~vGKT 34 (196)
T 3llu_A 23 ILLMGLRRSGKS 34 (196)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558999999997
No 222
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=31.48 E-value=12 Score=26.52 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=10.5
Q ss_pred hhhhhcccccccc--eeeeeccCCCce
Q psy13769 96 TAVVKNQVAKFND--LRFVGRSGRGKS 120 (155)
Q Consensus 96 tavmknqvA~FND--LRFvGRSGRGKs 120 (155)
.+.|.+...+-+. +=++|.+|.|||
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKS 44 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKT 44 (204)
T ss_dssp ------------CEEEEEEESTTSSHH
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHH
Confidence 3344444333333 347899999997
No 223
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=31.39 E-value=12 Score=26.57 Aligned_cols=12 Identities=42% Similarity=0.894 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 41 i~ivG~~gvGKT 52 (226)
T 2hf9_A 41 FDFMGAIGSGKT 52 (226)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEEcCCCCCHH
Confidence 568999999997
No 224
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=31.33 E-value=12 Score=26.18 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 29 i~vvG~~~~GKS 40 (192)
T 2il1_A 29 VIIIGSRGVGKT 40 (192)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 225
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=31.25 E-value=40 Score=23.55 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=23.7
Q ss_pred eEEEEeecCCCccch-hcchh---------hhhhhccccccc-ceeeeeccC
Q psy13769 76 TIVTIRAGNDDNYCG-ELRNC---------TAVVKNQVAKFN-DLRFVGRSG 116 (155)
Q Consensus 76 T~Vtv~AGNDEn~~a-ELRN~---------tavmknqvA~FN-DLRFvGRSG 116 (155)
..|.+-.||-|.+.. .++.. ...+.++...++ +++|+|-.|
T Consensus 64 ~pv~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~g~~~ 115 (228)
T 1uf3_A 64 LPTAYVPGPQDAPIWEYLREAANVELVHPEMRNVHETFTFWRGPYLVAGVGG 115 (228)
T ss_dssp SCEEEECCTTSCSHHHHHHHHHHHHHHCTTEEECBTSEEEETTTEEEEEECS
T ss_pred CcEEEECCCCCchhHHHHHhhhhhhccCcceEEcccceEeeCCCcEEecCCC
Confidence 347788999887653 22222 112334444555 888888654
No 226
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=30.97 E-value=13 Score=26.31 Aligned_cols=12 Identities=42% Similarity=0.606 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 28 i~vvG~~~~GKS 39 (207)
T 2fv8_A 28 LVVVGDGACGKT 39 (207)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 568999999997
No 227
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=30.96 E-value=13 Score=25.64 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 24 i~v~G~~~~GKS 35 (190)
T 2h57_A 24 VLCLGLDNSGKT 35 (190)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558999999997
No 228
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=30.88 E-value=12 Score=26.50 Aligned_cols=12 Identities=42% Similarity=0.797 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|++|.|||
T Consensus 9 v~lvG~~~vGKS 20 (192)
T 2cjw_A 9 VVLIGEQGVGKS 20 (192)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999997
No 229
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=30.85 E-value=12 Score=26.02 Aligned_cols=14 Identities=29% Similarity=0.603 Sum_probs=11.4
Q ss_pred ceeeeeccCCCcee
Q psy13769 108 DLRFVGRSGRGKSF 121 (155)
Q Consensus 108 DLRFvGRSGRGKsf 121 (155)
-+=+.|-||.|||-
T Consensus 13 ~i~i~G~~GsGKst 26 (180)
T 3iij_A 13 NILLTGTPGVGKTT 26 (180)
T ss_dssp CEEEECSTTSSHHH
T ss_pred eEEEEeCCCCCHHH
Confidence 35689999999983
No 230
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=30.84 E-value=12 Score=32.79 Aligned_cols=14 Identities=43% Similarity=0.548 Sum_probs=11.2
Q ss_pred eeeeccCCCceeEE
Q psy13769 110 RFVGRSGRGKSFTL 123 (155)
Q Consensus 110 RFvGRSGRGKsftl 123 (155)
=++|.||+|||=-|
T Consensus 352 aIiGpnGsGKSTLl 365 (670)
T 3ux8_A 352 AVTGVSGSGKSTLV 365 (670)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEEeeCCCCHHHHH
Confidence 36899999999554
No 231
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=30.79 E-value=15 Score=25.75 Aligned_cols=12 Identities=58% Similarity=0.888 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 36 i~vvG~~~~GKS 47 (199)
T 3l0i_B 36 LLLIGDSGVGKS 47 (199)
T ss_dssp EEEECCTTSCCT
T ss_pred EEEECCCCCCHH
Confidence 458999999996
No 232
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=30.77 E-value=12 Score=31.81 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=15.9
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||+|||=.|.+-.--.+|
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEcCCCchHHHHHHHHHcCCCC
Confidence 447899999999655444333344
No 233
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=30.23 E-value=13 Score=25.73 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=10.0
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=+.|-+|+|||
T Consensus 7 I~l~G~~GsGKS 18 (186)
T 3cm0_A 7 VIFLGPPGAGKG 18 (186)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECCCCCCHH
Confidence 457899999997
No 234
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=30.22 E-value=13 Score=29.31 Aligned_cols=12 Identities=50% Similarity=0.797 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|++|.|||
T Consensus 11 VaIvG~~nvGKS 22 (301)
T 1ega_A 11 IAIVGRPNVGKS 22 (301)
T ss_dssp EEEECSSSSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999998
No 235
>3vx6_A E1; 2.60A {Kluyveromyces marxianus} PDB: 3vx7_A
Probab=30.16 E-value=85 Score=25.81 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=39.0
Q ss_pred eEEEEeecC-CCccchhcchhhhhhhcccccccceeeee-ccCCCceeEEEEEEec
Q psy13769 76 TIVTIRAGN-DDNYCGELRNCTAVVKNQVAKFNDLRFVG-RSGRGKSFTLSIMVGS 129 (155)
Q Consensus 76 T~Vtv~AGN-DEn~~aELRN~tavmknqvA~FNDLRFvG-RSGRGKsftltItv~t 129 (155)
+.+-+-..+ +++..--|||..+.+..+- +++.++++. |...| ||.++|.+..
T Consensus 198 ~~~f~Dps~~~~~PGWpLRNlL~ll~~~~-~~~~v~vl~~R~~~~-S~~~~l~~~~ 251 (283)
T 3vx6_A 198 KVVFKDFSHLKDIPSAVTKNILTVWSKLS-PRETYTICFLRSDES-SFEAEIIINN 251 (283)
T ss_dssp EEEEECSBCSTTCCBTTHHHHHHHHHHHS-CCSCEEEEEECTTTT-CEEEEEEEES
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHhc-CCceEEEEEEeCCCC-cEEEEEEecC
Confidence 444555555 6688999999999887444 788898887 76555 9999988764
No 236
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=30.07 E-value=25 Score=25.48 Aligned_cols=52 Identities=15% Similarity=0.301 Sum_probs=33.0
Q ss_pred CCccchhcchhhhhhhcccc-cccceeeeeccCCCceeEEEEEEe-cCCceeeeeeeee
Q psy13769 85 DDNYCGELRNCTAVVKNQVA-KFNDLRFVGRSGRGKSFTLSIMVG-SSPHQIASYNKAI 141 (155)
Q Consensus 85 DEn~~aELRN~tavmknqvA-~FNDLRFvGRSGRGKsftltItv~-t~Ppqvaty~~AI 141 (155)
++.+-+++ .+++++.+. .|.- -+-.|--||.-.+||+|. ++..|+-.+-+++
T Consensus 46 ~~~~~~~V---~~vv~~~~p~d~~~--~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L 99 (109)
T 1rwu_A 46 LPELVDQV---VEVVQRHAPGDYTP--TVKPSSKGNYHSVSITINATHIEQVETLYEEL 99 (109)
T ss_dssp CTTHHHHH---HHHHHHHSSSCCCE--EEEESSCSSEEEEEEEECCSSHHHHHHHHHHH
T ss_pred cHHHHHHH---HHHHHHhCCCCCCc--eecCCCCCeEEEEEEEEEECCHHHHHHHHHHH
Confidence 33344443 356666555 5643 445688899888888887 7777776655554
No 237
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=30.05 E-value=14 Score=25.88 Aligned_cols=12 Identities=58% Similarity=0.905 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 11 i~v~G~~~~GKS 22 (206)
T 2bcg_Y 11 LLLIGNSGVGKS 22 (206)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 238
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=29.93 E-value=13 Score=30.49 Aligned_cols=11 Identities=45% Similarity=0.875 Sum_probs=9.7
Q ss_pred eeeeccCCCce
Q psy13769 110 RFVGRSGRGKS 120 (155)
Q Consensus 110 RFvGRSGRGKs 120 (155)
=++|.+|.|||
T Consensus 30 ~i~G~nG~GKs 40 (430)
T 1w1w_A 30 SIIGPNGSGKS 40 (430)
T ss_dssp EEECSTTSSHH
T ss_pred EEECCCCCCHH
Confidence 47899999987
No 239
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=29.89 E-value=13 Score=30.58 Aligned_cols=61 Identities=20% Similarity=0.186 Sum_probs=31.4
Q ss_pred ceEEEEeecCCCCeEEEEeecCCCccc-hhcchhhhhhhcc-cccccceeeeeccCCCceeEEEE
Q psy13769 63 AFKVVVLDDVMDGTIVTIRAGNDDNYC-GELRNCTAVVKNQ-VAKFNDLRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 63 ~FkVvaL~~VpDGT~Vtv~AGNDEn~~-aELRN~tavmknq-vA~FNDLRFvGRSGRGKsftltI 125 (155)
-|+|-++.. ..|..++++--.++... .+|- ...++++- +..-.=+=++|.||+|||=+|..
T Consensus 93 r~Rv~~~~~-~~g~~~viR~l~~~~~~l~~lg-~~~~l~~l~~~~g~~i~ivG~~GsGKTTll~~ 155 (372)
T 2ewv_A 93 RFRANVFYQ-RGSVAAALRSLPAEIPEFKKLG-LPDKVLELCHRKMGLILVTGPTGSGKSTTIAS 155 (372)
T ss_dssp EEEEEEECC-SSSCBEEECCBCSSCCCHHHHC-CCSSHHHHTTSSSEEEEEECSSSSSHHHHHHH
T ss_pred EEEEEEEec-CCCcEEEEEeCCcccCCHhHcC-CCHHHHHHhhcCCCEEEEECCCCCCHHHHHHH
Confidence 466655543 45666777655444322 2221 11223321 12222356899999999855543
No 240
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=29.80 E-value=14 Score=28.11 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=10.3
Q ss_pred eeeeccCCCceeE
Q psy13769 110 RFVGRSGRGKSFT 122 (155)
Q Consensus 110 RFvGRSGRGKsft 122 (155)
=++|++|.|||.-
T Consensus 34 ~i~G~~GsGKTtl 46 (279)
T 1nlf_A 34 ALVSPGGAGKSML 46 (279)
T ss_dssp EEEESTTSSHHHH
T ss_pred EEEcCCCCCHHHH
Confidence 3678999999854
No 241
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=29.80 E-value=13 Score=25.94 Aligned_cols=12 Identities=58% Similarity=0.980 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 24 i~vvG~~~vGKT 35 (187)
T 3c5c_A 24 LAILGRRGAGKS 35 (187)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCcHH
Confidence 568999999997
No 242
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=29.79 E-value=13 Score=25.36 Aligned_cols=12 Identities=58% Similarity=0.888 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 19 i~v~G~~~~GKS 30 (196)
T 3tkl_A 19 LLLIGDSGVGKS 30 (196)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 558999999996
No 243
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=29.77 E-value=13 Score=26.22 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=10.8
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 15 i~~~G~~g~GKT 26 (218)
T 1nrj_B 15 IIIAGPQNSGKT 26 (218)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 569999999997
No 244
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=29.72 E-value=13 Score=25.78 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 24 i~v~G~~~~GKS 35 (191)
T 2a5j_A 24 YIIIGDTGVGKS 35 (191)
T ss_dssp EEEESSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 558999999997
No 245
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=29.65 E-value=14 Score=25.37 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 24 i~v~G~~~~GKS 35 (181)
T 2h17_A 24 VIIVGLDNAGKT 35 (181)
T ss_dssp EEEEEETTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999986
No 246
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=29.65 E-value=13 Score=25.79 Aligned_cols=12 Identities=33% Similarity=0.653 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 11 i~v~G~~~~GKS 22 (203)
T 1zbd_A 11 ILIIGNSSVGKT 22 (203)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 247
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=29.57 E-value=16 Score=24.42 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=18.7
Q ss_pred hcchhhhhhhcccccccceeeeeccCCCceeE
Q psy13769 91 ELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFT 122 (155)
Q Consensus 91 ELRN~tavmknqvA~FNDLRFvGRSGRGKsft 122 (155)
|++.....+++ ..-.-+=+.|-+|.||+..
T Consensus 30 ~~~~l~~~l~~--~~~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 30 EIRRAIQILSR--RTKNNPILLGDPGVGKTAI 59 (187)
T ss_dssp HHHHHHHHHTS--SSSCEEEEESCGGGCHHHH
T ss_pred HHHHHHHHHhC--CCCCceEEECCCCCCHHHH
Confidence 44444444443 2234567899999999753
No 248
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=29.54 E-value=14 Score=25.57 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 26 i~v~G~~~~GKS 37 (191)
T 3dz8_A 26 LLIIGNSSVGKT 37 (191)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCcCHH
Confidence 458999999997
No 249
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=29.52 E-value=14 Score=25.34 Aligned_cols=12 Identities=25% Similarity=0.529 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 25 i~v~G~~~~GKs 36 (189)
T 2x77_A 25 VLMLGLDNAGKT 36 (189)
T ss_dssp EEEEEETTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 250
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=29.52 E-value=24 Score=29.93 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=41.2
Q ss_pred CCCccccCCCCC---cceEEEEeecCCCCeEEEEeecCCCccchhcchhh------hhhhcccccccc-eeeeeccCCCc
Q psy13769 50 LPTHWRSNKSLP---IAFKVVVLDDVMDGTIVTIRAGNDDNYCGELRNCT------AVVKNQVAKFND-LRFVGRSGRGK 119 (155)
Q Consensus 50 LP~HWRsNKtLP---~~FkVvaL~~VpDGT~Vtv~AGNDEn~~aELRN~t------avmknqvA~FND-LRFvGRSGRGK 119 (155)
+|+..|-+-.++ .-|+|-.+ +..+|..++++-=+..+..-+|.|-. .++++-+.+=.. +=++|.+|+||
T Consensus 102 ~~q~g~~~~~~~~~~~~~Rvs~~-~~~~g~~~viR~~~~~~~~~~l~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGK 180 (418)
T 1p9r_A 102 VPQDGRISLRIGGRAVDVRVSTM-PSSHGERVVMRLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGK 180 (418)
T ss_dssp SCEEEEEEC-----CEEEEEEEE-CCTTSCEEEECCEETTTTCCCGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCH
T ss_pred CCCCceEEEEECCceEEEEEEEe-ecCCCcEEEEEecccccCCCCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCH
Confidence 455555555553 34776655 45688888887655443333444321 233333211112 45889999999
Q ss_pred eeEEEEE
Q psy13769 120 SFTLSIM 126 (155)
Q Consensus 120 sftltIt 126 (155)
|=+|.+-
T Consensus 181 TTlL~al 187 (418)
T 1p9r_A 181 STTLYAG 187 (418)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9766543
No 251
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=29.44 E-value=13 Score=25.77 Aligned_cols=12 Identities=50% Similarity=0.855 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 23 i~v~G~~~~GKS 34 (213)
T 3cph_A 23 ILLIGDSGVGKS 34 (213)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 252
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=29.33 E-value=7.9 Score=32.18 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=15.3
Q ss_pred eeeeeccCCCceeEEEEEEecCCc
Q psy13769 109 LRFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 109 LRFvGRSGRGKsftltItv~t~Pp 132 (155)
+=++|.||+|||=.|.+-.--.+|
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSSCC
T ss_pred EEEECCCCccHHHHHHHHHcCCCC
Confidence 346899999998655443333333
No 253
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=29.08 E-value=14 Score=25.31 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=10.0
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=+.|-+|+|||
T Consensus 6 I~i~G~~GsGKs 17 (192)
T 1kht_A 6 VVVTGVPGVGST 17 (192)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECCCCCCHH
Confidence 557899999987
No 254
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=29.05 E-value=5.9 Score=32.46 Aligned_cols=13 Identities=54% Similarity=0.787 Sum_probs=11.2
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
-+=|+|.||.|||
T Consensus 175 ~~~lvG~sG~GKS 187 (307)
T 1t9h_A 175 TTVFAGQSGVGKS 187 (307)
T ss_dssp EEEEEESHHHHHH
T ss_pred EEEEECCCCCCHH
Confidence 3569999999998
No 255
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=29.03 E-value=14 Score=30.73 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=+|||+|.|||
T Consensus 26 V~lvG~~nvGKS 37 (456)
T 4dcu_A 26 VAIVGRPNVGKS 37 (456)
T ss_dssp EEEECSSSSSHH
T ss_pred EEEECCCCCcHH
Confidence 558999999997
No 256
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=28.90 E-value=15 Score=26.55 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=11.2
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
.+=++|.+|.|||
T Consensus 28 ki~lvG~~~vGKS 40 (201)
T 2ew1_A 28 KIVLIGNAGVGKT 40 (201)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 3668999999997
No 257
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=28.86 E-value=15 Score=25.29 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 19 i~v~G~~~~GKs 30 (187)
T 1zj6_A 19 VIIVGLDNAGKT 30 (187)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999986
No 258
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=28.84 E-value=14 Score=25.63 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=11.2
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
.+=++|.+|.|||
T Consensus 22 ki~~~G~~~~GKs 34 (201)
T 2q3h_A 22 KCVLVGDGAVGKT 34 (201)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3678999999997
No 259
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=28.79 E-value=15 Score=25.33 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=11.2
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
.+=++|.+|.|||
T Consensus 20 ki~v~G~~~~GKs 32 (194)
T 2atx_A 20 KCVVVGDGAVGKT 32 (194)
T ss_dssp EEEEEECTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3668999999997
No 260
>3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina}
Probab=28.60 E-value=9.2 Score=33.11 Aligned_cols=27 Identities=44% Similarity=0.663 Sum_probs=18.8
Q ss_pred eecCCCcc--ccCCCCCcceEEEEeecCCCCeEEE
Q psy13769 47 CSVLPTHW--RSNKSLPIAFKVVVLDDVMDGTIVT 79 (155)
Q Consensus 47 Cs~LP~HW--RsNKtLP~~FkVvaL~~VpDGT~Vt 79 (155)
|..||+-. -+|.+||.+|+- .||+.||
T Consensus 11 ~~~~p~~~~~~~~~~LPdpf~~------~~G~~Vt 39 (375)
T 3pic_A 11 CSALPGSITLRSNAKLNDLFTM------FNGDKVT 39 (375)
T ss_dssp ---CCSSCCCCCCSSCCCTTBC------TTSCBCC
T ss_pred CCCCCCCCCCcccCCCCCcccc------CCCCCcc
Confidence 88999887 789999999973 3666655
No 261
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=28.20 E-value=18 Score=25.18 Aligned_cols=12 Identities=42% Similarity=0.731 Sum_probs=9.8
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=.+|-+|+|||
T Consensus 11 I~i~G~~GsGKS 22 (203)
T 1uf9_A 11 IGITGNIGSGKS 22 (203)
T ss_dssp EEEEECTTSCHH
T ss_pred EEEECCCCCCHH
Confidence 456889999997
No 262
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=27.98 E-value=16 Score=26.06 Aligned_cols=12 Identities=50% Similarity=0.883 Sum_probs=10.2
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 18 i~v~G~~~~GKS 29 (221)
T 3gj0_A 18 LVLVGDGGTGKT 29 (221)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 457999999996
No 263
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=27.97 E-value=15 Score=27.18 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=21.1
Q ss_pred chhcchhhhhhhcccccccc--------eeeeeccCCCceeEE
Q psy13769 89 CGELRNCTAVVKNQVAKFND--------LRFVGRSGRGKSFTL 123 (155)
Q Consensus 89 ~aELRN~tavmknqvA~FND--------LRFvGRSGRGKsftl 123 (155)
-.++++....+++. ..|++ +=++|.+|.|||..+
T Consensus 25 ~~~l~~l~~~~~~~-~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 25 KEELKEIVEFLKNP-SRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp HHHHHHHHHHHHCH-HHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHCH-HHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 45666666555432 12222 568999999998543
No 264
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=27.97 E-value=15 Score=25.83 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=11.1
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
.+=++|.+|.|||
T Consensus 27 ki~v~G~~~~GKS 39 (200)
T 2o52_A 27 KFLVIGSAGTGKS 39 (200)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 3668999999997
No 265
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=27.95 E-value=15 Score=30.58 Aligned_cols=12 Identities=58% Similarity=0.869 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=|.|.||.|||
T Consensus 150 vli~G~sG~GKS 161 (312)
T 1knx_A 150 VLLTGRSGIGKS 161 (312)
T ss_dssp EEEEESSSSSHH
T ss_pred EEEEcCCCCCHH
Confidence 558899999998
No 266
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=27.93 E-value=15 Score=27.76 Aligned_cols=11 Identities=45% Similarity=0.782 Sum_probs=9.7
Q ss_pred eeeeccCCCce
Q psy13769 110 RFVGRSGRGKS 120 (155)
Q Consensus 110 RFvGRSGRGKs 120 (155)
=++|.+|.|||
T Consensus 43 ~vvG~~g~GKS 53 (270)
T 1h65_A 43 LVMGKGGVGKS 53 (270)
T ss_dssp EEEESTTSSHH
T ss_pred EEECCCCCCHH
Confidence 37899999998
No 267
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=27.89 E-value=16 Score=26.19 Aligned_cols=12 Identities=42% Similarity=0.767 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 37 i~vvG~~~vGKS 48 (214)
T 2j1l_A 37 VVLVGDGGCGKT 48 (214)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 568999999997
No 268
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=27.75 E-value=15 Score=25.04 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 21 i~v~G~~~~GKs 32 (186)
T 1ksh_A 21 LLMLGLDNAGKT 32 (186)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458899999997
No 269
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=27.64 E-value=15 Score=30.08 Aligned_cols=14 Identities=50% Similarity=0.804 Sum_probs=11.2
Q ss_pred eeeeeccCCCceeE
Q psy13769 109 LRFVGRSGRGKSFT 122 (155)
Q Consensus 109 LRFvGRSGRGKsft 122 (155)
+=++|.||.|||=+
T Consensus 132 i~lvG~nGaGKTTl 145 (328)
T 3e70_C 132 IMFVGFNGSGKTTT 145 (328)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45899999999843
No 270
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=27.59 E-value=16 Score=25.40 Aligned_cols=13 Identities=38% Similarity=0.726 Sum_probs=11.0
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
.+=++|.+|.|||
T Consensus 25 ki~vvG~~~~GKS 37 (192)
T 2fg5_A 25 KVCLLGDTGVGKS 37 (192)
T ss_dssp EEEEEECTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 3568999999997
No 271
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=27.34 E-value=16 Score=35.19 Aligned_cols=13 Identities=54% Similarity=0.754 Sum_probs=10.8
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
.=+||+||+|||=
T Consensus 447 vaivG~sGsGKST 459 (1321)
T 4f4c_A 447 VALVGSSGCGKST 459 (1321)
T ss_dssp EEEEECSSSCHHH
T ss_pred EEEEecCCCcHHH
Confidence 4579999999983
No 272
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=27.27 E-value=15 Score=25.48 Aligned_cols=12 Identities=58% Similarity=0.930 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 31 i~v~G~~~vGKS 42 (196)
T 2atv_A 31 LAIFGRAGVGKS 42 (196)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 273
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=27.20 E-value=15 Score=35.24 Aligned_cols=14 Identities=50% Similarity=0.712 Sum_probs=11.3
Q ss_pred ceeeeeccCCCcee
Q psy13769 108 DLRFVGRSGRGKSF 121 (155)
Q Consensus 108 DLRFvGRSGRGKsf 121 (155)
=+=.||+||+|||=
T Consensus 418 ~~~ivG~sGsGKST 431 (1284)
T 3g5u_A 418 TVALVGNSGCGKST 431 (1284)
T ss_dssp EEEEECCSSSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 35579999999983
No 274
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=27.19 E-value=48 Score=25.01 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=22.9
Q ss_pred CCCCCcceE----EEEeecC-CCCeEE--EEeecCCCccch
Q psy13769 57 NKSLPIAFK----VVVLDDV-MDGTIV--TIRAGNDDNYCG 90 (155)
Q Consensus 57 NKtLP~~Fk----VvaL~~V-pDGT~V--tv~AGNDEn~~a 90 (155)
+-.||..|+ ||+-|.. +||+.+ .|.|.=||||-.
T Consensus 72 ~GilPDlFrEGqgVVa~G~l~~~g~F~A~eVLaKhdekY~p 112 (136)
T 1j6q_A 72 DDLLPDLFREGQGIVAQGVLGEDGKLAATEVLAKHDENYMP 112 (136)
T ss_dssp CSCCTTSCCSSSEEEEEEEECSTTSEEEEEEECCC------
T ss_pred CCCCCccccCCCeEEEEEEECCCCeEEEEEEEecCCCCCCC
Confidence 557888886 9999987 489875 699999999975
No 275
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=26.83 E-value=16 Score=24.81 Aligned_cols=13 Identities=46% Similarity=0.795 Sum_probs=11.0
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
-+=++|.+|.|||
T Consensus 17 ~i~v~G~~~~GKs 29 (195)
T 1x3s_A 17 KILIIGESGVGKS 29 (195)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3568999999997
No 276
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=26.49 E-value=16 Score=32.02 Aligned_cols=14 Identities=43% Similarity=0.541 Sum_probs=11.3
Q ss_pred eeeeeccCCCceeE
Q psy13769 109 LRFVGRSGRGKSFT 122 (155)
Q Consensus 109 LRFvGRSGRGKsft 122 (155)
+=.+|.||+|||=-
T Consensus 47 ~~liGpNGaGKSTL 60 (670)
T 3ux8_A 47 VVLTGLSGSGKSSL 60 (670)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 44799999999944
No 277
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=26.30 E-value=16 Score=28.95 Aligned_cols=12 Identities=42% Similarity=0.714 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|++|.|||
T Consensus 10 V~ivG~~nvGKS 21 (301)
T 1wf3_A 10 VAIVGKPNVGKS 21 (301)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558999999998
No 278
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=26.26 E-value=16 Score=31.68 Aligned_cols=17 Identities=41% Similarity=0.677 Sum_probs=13.2
Q ss_pred eeeeeccCCCceeEEEE
Q psy13769 109 LRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 109 LRFvGRSGRGKsftltI 125 (155)
+=.+|.||+|||=-|.|
T Consensus 50 ~~LvG~NGaGKSTLlk~ 66 (538)
T 1yqt_A 50 VGIVGPNGTGKSTAVKI 66 (538)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45799999999955544
No 279
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=26.22 E-value=17 Score=28.95 Aligned_cols=13 Identities=38% Similarity=0.601 Sum_probs=10.8
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
-+=+||.+|.|||
T Consensus 36 ~I~vvG~~~sGKS 48 (360)
T 3t34_A 36 AIAVVGGQSSGKS 48 (360)
T ss_dssp EEEEECBTTSSHH
T ss_pred EEEEECCCCCcHH
Confidence 4557899999997
No 280
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=26.16 E-value=16 Score=25.60 Aligned_cols=12 Identities=42% Similarity=0.714 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 10 i~vvG~~~~GKT 21 (214)
T 2fh5_B 10 VLFVGLCDSGKT 21 (214)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558999999997
No 281
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=25.75 E-value=17 Score=26.12 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=10.4
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=+.|-+|+|||-
T Consensus 7 I~i~G~~GSGKST 19 (218)
T 1vht_A 7 VALTGGIGSGKST 19 (218)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 4578999999974
No 282
>2yh5_A DAPX protein, BAMC; lipid binding protein, lipoprotein, BAM complex; 1.25A {Escherichia coli} PDB: 3sns_A
Probab=25.61 E-value=61 Score=23.59 Aligned_cols=49 Identities=10% Similarity=0.069 Sum_probs=33.1
Q ss_pred CCCCcceEEEEeecCCCCeEEEEeecCCCccch-hcchhhhhhhcccccc
Q psy13769 58 KSLPIAFKVVVLDDVMDGTIVTIRAGNDDNYCG-ELRNCTAVVKNQVAKF 106 (155)
Q Consensus 58 KtLP~~FkVvaL~~VpDGT~Vtv~AGNDEn~~a-ELRN~tavmknqvA~F 106 (155)
..++..---|.|++..++|.|+|.-.+..-... +.+.-..+++++..|.
T Consensus 71 ~~~~~~~Y~i~v~~~g~~t~V~v~d~~G~p~~~~~a~~ll~~L~~~l~~~ 120 (127)
T 2yh5_A 71 PGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDALVAVFQAAFSKL 120 (127)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEECTTSCBCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEEEeCCCceEEEEECCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 445555555778899999999999876665544 4555566666666543
No 283
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=25.28 E-value=19 Score=27.30 Aligned_cols=12 Identities=42% Similarity=0.642 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|++|.|||
T Consensus 27 I~vvG~~~~GKS 38 (315)
T 1jwy_B 27 IVVVGSQSSGKS 38 (315)
T ss_dssp EEEEECSSSSHH
T ss_pred EEEEcCCCCCHH
Confidence 558899999997
No 284
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=25.19 E-value=8.2 Score=31.97 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=15.0
Q ss_pred eeeeccCCCceeEEEEEEecCCc
Q psy13769 110 RFVGRSGRGKSFTLSIMVGSSPH 132 (155)
Q Consensus 110 RFvGRSGRGKsftltItv~t~Pp 132 (155)
=.+|.||+|||=.|.+-.--.+|
T Consensus 35 ~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 35 GILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp EEECSCHHHHHHHHHHHHTSSCC
T ss_pred EEECCCCCcHHHHHHHHhCCCCC
Confidence 46899999999655543333344
No 285
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=25.08 E-value=11 Score=25.86 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=21.3
Q ss_pred eeccCCCceeEEEEEEe-cCCceeeeeeeee
Q psy13769 112 VGRSGRGKSFTLSIMVG-SSPHQIASYNKAI 141 (155)
Q Consensus 112 vGRSGRGKsftltItv~-t~Ppqvaty~~AI 141 (155)
.-.|--||--.+||+|. ++..|+-.+.+++
T Consensus 46 ~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L 76 (86)
T 2h9z_A 46 KNTSKNAKFYSFNVSMEVSNESERNEIFQKI 76 (86)
T ss_dssp SCSSCCSSCEEEEEEEECCSHHHHHHHHHHH
T ss_pred cccCCCCeEEEEEEEEEECCHHHHHHHHHHH
Confidence 44577788888888887 7777776655554
No 286
>3vkl_A Galectin-8; beta-sandwich, carbohydrate binding, oligosaccharide, sugar protein; HET: GAL BGC; 2.55A {Homo sapiens} PDB: 3naj_A* 3vkm_A* 4fqz_A* 3ojb_A
Probab=24.96 E-value=57 Score=26.42 Aligned_cols=14 Identities=50% Similarity=0.617 Sum_probs=11.7
Q ss_pred CCceeEEEEEEecC
Q psy13769 117 RGKSFTLSIMVGSS 130 (155)
Q Consensus 117 RGKsftltItv~t~ 130 (155)
+|+.|.|.|.+...
T Consensus 99 ~G~~F~l~I~~~~~ 112 (291)
T 3vkl_A 99 REKSFEIVIMVLKD 112 (291)
T ss_dssp TTCEEEEEEEECSS
T ss_pred CCCeEEEEEEEcCC
Confidence 69999999988654
No 287
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=24.93 E-value=16 Score=27.54 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=10.7
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=++|-||+|||-
T Consensus 35 i~l~G~~GsGKST 47 (253)
T 2p5t_B 35 ILLGGQSGAGKTT 47 (253)
T ss_dssp EEEESCGGGTTHH
T ss_pred EEEECCCCCCHHH
Confidence 4578999999984
No 288
>3bwu_F Protein FIMF; usher, N-terminal domain, ternary complex with chaperone and subunit, chaperone, structural protein, mebrane protein; 1.76A {Escherichia coli} PDB: 3jwn_E
Probab=24.89 E-value=86 Score=21.55 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=17.7
Q ss_pred eccCCCceeEEEEEEecCCceeeeeeeeeEEeeeCCCC
Q psy13769 113 GRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPRE 150 (155)
Q Consensus 113 GRSGRGKsftltItv~t~Ppqvaty~~AIKVTVDGPRe 150 (155)
|.....|.|+|.++ .|... .+.++|+.+|.-.
T Consensus 29 g~~~~~~~F~I~l~-~C~~~-----~~~v~v~f~g~~~ 60 (142)
T 3bwu_F 29 GATTPVVPFRILLS-PCGNA-----VSAVKVGFTGVAD 60 (142)
T ss_dssp CCBCCCEEEEEEEE-EECTT-----CCEEEEEEECCBC
T ss_pred CcccCCCCeEEEEc-CCCCC-----CceEEEEEECCCC
Confidence 43334577777665 23322 2567777777543
No 289
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=24.73 E-value=18 Score=31.78 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=12.3
Q ss_pred ceeeeeccCCCceeEE
Q psy13769 108 DLRFVGRSGRGKSFTL 123 (155)
Q Consensus 108 DLRFvGRSGRGKsftl 123 (155)
=+-++|.||+|||=.|
T Consensus 31 ~~~liG~nGsGKSTLl 46 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTM 46 (483)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 3568999999998443
No 290
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=24.63 E-value=20 Score=25.81 Aligned_cols=13 Identities=38% Similarity=0.549 Sum_probs=11.2
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
-+=++|.+|.|||
T Consensus 30 ki~vvG~~~vGKS 42 (205)
T 1gwn_A 30 KIVVVGDSQCGKT 42 (205)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4669999999997
No 291
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=24.56 E-value=19 Score=28.28 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=11.6
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
-+-++|-||.|||
T Consensus 50 ~i~l~G~~GsGKS 62 (250)
T 3nwj_A 50 SMYLVGMMGSGKT 62 (250)
T ss_dssp CEEEECSTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 4779999999998
No 292
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=24.55 E-value=19 Score=24.99 Aligned_cols=12 Identities=50% Similarity=0.869 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|-+|+|||
T Consensus 7 i~i~G~~GsGKs 18 (175)
T 1via_A 7 IVFIGFMGSGKS 18 (175)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEEcCCCCCHH
Confidence 568899999997
No 293
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=24.55 E-value=18 Score=25.44 Aligned_cols=13 Identities=46% Similarity=0.672 Sum_probs=11.0
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
.+=++|.+|.|||
T Consensus 27 ki~vvG~~~~GKS 39 (217)
T 2f7s_A 27 KLLALGDSGVGKT 39 (217)
T ss_dssp EEEEESCTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 3668999999996
No 294
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=24.48 E-value=18 Score=24.98 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 25 i~v~G~~~~GKS 36 (188)
T 1zd9_A 25 LTLVGLQYSGKT 36 (188)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999997
No 295
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=24.37 E-value=16 Score=29.24 Aligned_cols=18 Identities=33% Similarity=0.678 Sum_probs=14.2
Q ss_pred ceeeeeccCCCceeEEEE
Q psy13769 108 DLRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 108 DLRFvGRSGRGKsftltI 125 (155)
..=++|-||.|||+.+..
T Consensus 37 ~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CEEEECCTTSSHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHH
Confidence 356899999999987643
No 296
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=24.29 E-value=19 Score=26.69 Aligned_cols=10 Identities=50% Similarity=1.049 Sum_probs=8.7
Q ss_pred eeeccCCCce
Q psy13769 111 FVGRSGRGKS 120 (155)
Q Consensus 111 FvGRSGRGKs 120 (155)
++|.+|+|||
T Consensus 28 I~G~NgsGKS 37 (203)
T 3qks_A 28 IIGQNGSGKS 37 (203)
T ss_dssp EECCTTSSHH
T ss_pred EEcCCCCCHH
Confidence 5799999997
No 297
>1hp9_A Kappa-hefutoxin 1; scorpion toxin, gating modifier, voltage-gated potassium channel; NMR {Synthetic} SCOP: j.33.2.1
Probab=24.28 E-value=11 Score=22.04 Aligned_cols=11 Identities=55% Similarity=1.075 Sum_probs=8.8
Q ss_pred eecCCCccchh
Q psy13769 81 RAGNDDNYCGE 91 (155)
Q Consensus 81 ~AGNDEn~~aE 91 (155)
+|||||.-|.|
T Consensus 10 ~~g~deetck~ 20 (26)
T 1hp9_A 10 REGNDEETCKE 20 (26)
T ss_dssp HHHSCTTHHHH
T ss_pred HccCcHHHHHH
Confidence 47999988865
No 298
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=24.21 E-value=19 Score=30.09 Aligned_cols=15 Identities=40% Similarity=0.694 Sum_probs=11.8
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+=+||.||.|||=++
T Consensus 160 i~lvG~nGsGKTTll 174 (359)
T 2og2_A 160 IMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEEcCCCChHHHHH
Confidence 448999999998544
No 299
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=24.18 E-value=33 Score=26.00 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=27.3
Q ss_pred CCCCCcceE----EEEeecC-CCCeEE--EEeecCCCccch
Q psy13769 57 NKSLPIAFK----VVVLDDV-MDGTIV--TIRAGNDDNYCG 90 (155)
Q Consensus 57 NKtLP~~Fk----VvaL~~V-pDGT~V--tv~AGNDEn~~a 90 (155)
+-.||..|+ ||+-|.. +||+.+ .|.|.=||||..
T Consensus 67 ~GilPDlFrEGqgVVa~G~l~~~g~F~A~eVLAKhdekYmp 107 (136)
T 1sr3_A 67 EGILPDLFREGQGVVVQGELEKGNHILAKEVLAKHDENYTP 107 (136)
T ss_dssp ESCCCTTCCTTSEEEEEEEECSSSEEEESSCBCCSCCCCCC
T ss_pred CCCCCccccCCCeEEEEEEECCCCeEEEEEEEecCCCCCCC
Confidence 457788885 9999987 578766 488999999975
No 300
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=24.09 E-value=19 Score=25.20 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=10.9
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
.+=++|.+|.|||
T Consensus 30 ki~v~G~~~~GKS 42 (199)
T 2p5s_A 30 KIVLAGDAAVGKS 42 (199)
T ss_dssp EEEEESSTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 3568999999997
No 301
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=23.86 E-value=20 Score=27.04 Aligned_cols=12 Identities=42% Similarity=0.772 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 39 I~lvG~~g~GKS 50 (262)
T 3def_A 39 VLVLGKGGVGKS 50 (262)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 457899999997
No 302
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=23.86 E-value=19 Score=26.01 Aligned_cols=12 Identities=42% Similarity=0.614 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+-++|-+|.|||
T Consensus 28 i~~~G~~GsGKs 39 (211)
T 1m7g_A 28 IWLTGLSASGKS 39 (211)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 678999999997
No 303
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=23.84 E-value=27 Score=23.95 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=12.4
Q ss_pred cceeeeeccCCCcee
Q psy13769 107 NDLRFVGRSGRGKSF 121 (155)
Q Consensus 107 NDLRFvGRSGRGKsf 121 (155)
..+=+.|-+|.||+.
T Consensus 25 ~~vll~G~~GtGKt~ 39 (145)
T 3n70_A 25 IAVWLYGAPGTGRMT 39 (145)
T ss_dssp SCEEEESSTTSSHHH
T ss_pred CCEEEECCCCCCHHH
Confidence 357799999999974
No 304
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=23.81 E-value=21 Score=25.10 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 32 i~v~G~~~vGKS 43 (192)
T 2b6h_A 32 ILMVGLDAAGKT 43 (192)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 678999999986
No 305
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=23.60 E-value=19 Score=29.56 Aligned_cols=14 Identities=36% Similarity=0.456 Sum_probs=10.9
Q ss_pred eeeeeccCCCceeE
Q psy13769 109 LRFVGRSGRGKSFT 122 (155)
Q Consensus 109 LRFvGRSGRGKsft 122 (155)
+=+.|-||+|||-.
T Consensus 95 igI~GpsGSGKSTl 108 (321)
T 3tqc_A 95 IGIAGSVAVGKSTT 108 (321)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 34678999999944
No 306
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=23.53 E-value=20 Score=24.52 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=9.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=+.|-+|+|||
T Consensus 6 I~l~G~~GsGKs 17 (196)
T 1tev_A 6 VFVLGGPGAGKG 17 (196)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 447888999987
No 307
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=23.45 E-value=21 Score=24.99 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 12 i~i~G~~~~GKT 23 (212)
T 2j0v_A 12 CVTVGDGAVGKT 23 (212)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558999999997
No 308
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=23.16 E-value=23 Score=26.60 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+-|+|-||+||+
T Consensus 7 i~i~G~sGsGKT 18 (169)
T 1xjc_A 7 WQVVGYKHSGKT 18 (169)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999986
No 309
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=23.15 E-value=20 Score=25.49 Aligned_cols=11 Identities=36% Similarity=0.746 Sum_probs=8.8
Q ss_pred eeeeccCCCce
Q psy13769 110 RFVGRSGRGKS 120 (155)
Q Consensus 110 RFvGRSGRGKs 120 (155)
=+.|++|.||+
T Consensus 34 ~i~G~pG~GKT 44 (251)
T 2zts_A 34 LLTGGTGTGKT 44 (251)
T ss_dssp EEECCTTSSHH
T ss_pred EEEeCCCCCHH
Confidence 45688999997
No 310
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=23.04 E-value=22 Score=25.16 Aligned_cols=13 Identities=38% Similarity=0.641 Sum_probs=11.0
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
.+=++|.+|.|||
T Consensus 31 ki~vvG~~~vGKS 43 (201)
T 2hup_A 31 KLVLVGDASVGKT 43 (201)
T ss_dssp EEEEEECTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 3668999999996
No 311
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=22.98 E-value=9.4 Score=26.96 Aligned_cols=12 Identities=58% Similarity=0.960 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 32 i~v~G~~~~GKS 43 (223)
T 4dhe_A 32 IAFAGRSNAGKS 43 (223)
T ss_dssp EEEEESCHHHHH
T ss_pred EEEEcCCCCCHH
Confidence 458999999997
No 312
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=22.96 E-value=20 Score=27.01 Aligned_cols=35 Identities=29% Similarity=0.497 Sum_probs=22.2
Q ss_pred cchhcchhhhhhhcccccccc--------eeeeeccCCCceeEE
Q psy13769 88 YCGELRNCTAVVKNQVAKFND--------LRFVGRSGRGKSFTL 123 (155)
Q Consensus 88 ~~aELRN~tavmknqvA~FND--------LRFvGRSGRGKsftl 123 (155)
.-.+|++....+++. ..|++ +=++|.+|.|||..+
T Consensus 48 ~~~~l~~l~~~~~~~-~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 48 AKEELKEIVEFLKNP-SRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHCH-HHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 346777776655442 12222 568999999998643
No 313
>1vaj_A Hypothetical protein PH0010; alpha + beta fold, structural genomics, unknown function; 1.82A {Pyrococcus horikoshii} SCOP: d.309.1.1
Probab=22.88 E-value=19 Score=28.83 Aligned_cols=74 Identities=26% Similarity=0.323 Sum_probs=46.1
Q ss_pred CCCeEEEEeecCCCccchhcchhhh-----------hhhcc-cccccceeeeecc-CCCceeEEEEEEecCCceee----
Q psy13769 73 MDGTIVTIRAGNDDNYCGELRNCTA-----------VVKNQ-VAKFNDLRFVGRS-GRGKSFTLSIMVGSSPHQIA---- 135 (155)
Q Consensus 73 pDGT~Vtv~AGNDEn~~aELRN~ta-----------vmknq-vA~FNDLRFvGRS-GRGKsftltItv~t~Ppqva---- 135 (155)
+-|.-||+..+|.- --.+||.|.- +.+|- .|-|+|=||--=+ .==+...++|+|.|.|-.+.
T Consensus 44 ~~g~FVTl~~~~~~-~~g~LRGCIGt~~p~~~L~~~i~~~Ai~AA~~DpRF~Pl~~~EL~~l~ieVsvL~~~e~i~~~~~ 122 (214)
T 1vaj_A 44 KMGVFVTLNRYNVP-PQTALRGCIGFPTPIYPLVEATIKAAIYSAVDDPRFPPVKLEEMDNLVVEVSVLTPPELIEGPPE 122 (214)
T ss_dssp BCEEEEEEEETTSC-GGGTEEEEEEESSSCSBHHHHHHHHHHHHHHCCTTSCCCCGGGGGGEEEEEEEECCCEECCSCGG
T ss_pred cccEEEEEEECcCC-CCCceeeeecCCCccccHHHHHHHHHHHhccCCCCCCCCCHHHhcCcEEEEEEcCCcEEcccccc
Confidence 56888999875322 3467887753 33332 4669999995311 12256788999988776664
Q ss_pred eeeeeeEEeeeC
Q psy13769 136 SYNKAIKVTVDG 147 (155)
Q Consensus 136 ty~~AIKVTVDG 147 (155)
.+-..+.|-+||
T Consensus 123 ~~~~~~~~G~hG 134 (214)
T 1vaj_A 123 ERPRKIKVGRDG 134 (214)
T ss_dssp GGGGGCCTTTCE
T ss_pred cCHHHcCCCCce
Confidence 333455555554
No 314
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=22.80 E-value=21 Score=34.30 Aligned_cols=15 Identities=53% Similarity=0.742 Sum_probs=11.6
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+=+||+||.|||=-+
T Consensus 1062 v~ivG~sGsGKSTl~ 1076 (1284)
T 3g5u_A 1062 LALVGSSGCGKSTVV 1076 (1284)
T ss_dssp EEEECSSSTTHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 457999999998433
No 315
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=22.77 E-value=21 Score=28.93 Aligned_cols=12 Identities=42% Similarity=0.720 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|++|.|||
T Consensus 77 v~lvG~pgaGKS 88 (349)
T 2www_A 77 VGLSGPPGAGKS 88 (349)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEEcCCCCCHH
Confidence 458999999998
No 316
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=22.68 E-value=21 Score=28.08 Aligned_cols=11 Identities=45% Similarity=0.724 Sum_probs=9.7
Q ss_pred eeeeccCCCce
Q psy13769 110 RFVGRSGRGKS 120 (155)
Q Consensus 110 RFvGRSGRGKs 120 (155)
=++|++|.|||
T Consensus 14 ~ivG~~nvGKS 24 (308)
T 3iev_A 14 AIVGKPNVGKS 24 (308)
T ss_dssp EEECSTTSSHH
T ss_pred EEECCCCCcHH
Confidence 47899999997
No 317
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=22.61 E-value=23 Score=24.31 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=6.1
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=+.|=+|+|||
T Consensus 8 I~l~G~~GsGKS 19 (183)
T 2vli_A 8 IWINGPFGVGKT 19 (183)
T ss_dssp EEEECCC----C
T ss_pred EEEECCCCCCHH
Confidence 457899999997
No 318
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=22.58 E-value=23 Score=26.83 Aligned_cols=12 Identities=33% Similarity=0.656 Sum_probs=10.1
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|.+|.|||
T Consensus 6 i~lvG~~g~GKT 17 (271)
T 3k53_A 6 VALVGNPNVGKT 17 (271)
T ss_dssp EEEEECSSSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999986
No 319
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=22.39 E-value=23 Score=24.16 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=10.5
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+=+.|-+|+|||-
T Consensus 9 I~l~G~~GsGKsT 21 (194)
T 1qf9_A 9 VFVLGGPGSGKGT 21 (194)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4578999999973
No 320
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=22.36 E-value=32 Score=23.60 Aligned_cols=15 Identities=13% Similarity=0.188 Sum_probs=12.5
Q ss_pred cceeeeeccCCCcee
Q psy13769 107 NDLRFVGRSGRGKSF 121 (155)
Q Consensus 107 NDLRFvGRSGRGKsf 121 (155)
..+=+.|-+|.||+.
T Consensus 28 ~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 28 SPVFLTGEAGSPFET 42 (143)
T ss_dssp SCEEEEEETTCCHHH
T ss_pred CcEEEECCCCccHHH
Confidence 357799999999975
No 321
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=22.12 E-value=21 Score=31.83 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=11.6
Q ss_pred eeeeeccCCCceeEE
Q psy13769 109 LRFVGRSGRGKSFTL 123 (155)
Q Consensus 109 LRFvGRSGRGKsftl 123 (155)
+=++|.||.|||=++
T Consensus 296 I~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCcccHHHHH
Confidence 348999999998544
No 322
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=22.03 E-value=23 Score=27.93 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|++|.|||
T Consensus 123 v~~vG~~nvGKS 134 (282)
T 1puj_A 123 ALIIGIPNVGKS 134 (282)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEEecCCCchH
Confidence 568999999997
No 323
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=22.02 E-value=22 Score=31.08 Aligned_cols=17 Identities=35% Similarity=0.700 Sum_probs=12.4
Q ss_pred eeeeccCCCceeEEEEE
Q psy13769 110 RFVGRSGRGKSFTLSIM 126 (155)
Q Consensus 110 RFvGRSGRGKsftltIt 126 (155)
=.+|.||+|||=-|.|-
T Consensus 29 gLiGpNGaGKSTLlkiL 45 (538)
T 3ozx_A 29 GVLGKNGVGKTTVLKIL 45 (538)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHH
Confidence 35899999998555443
No 324
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=22.00 E-value=22 Score=31.78 Aligned_cols=19 Identities=47% Similarity=0.672 Sum_probs=14.4
Q ss_pred ceeeeeccCCCceeEEEEE
Q psy13769 108 DLRFVGRSGRGKSFTLSIM 126 (155)
Q Consensus 108 DLRFvGRSGRGKsftltIt 126 (155)
=+=++|.||.|||=.|.|-
T Consensus 105 i~~LvGpNGaGKSTLLkiL 123 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKIL 123 (608)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHH
Confidence 4668999999999655443
No 325
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=21.95 E-value=26 Score=27.70 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=10.2
Q ss_pred eeeccCCCceeEE
Q psy13769 111 FVGRSGRGKSFTL 123 (155)
Q Consensus 111 FvGRSGRGKsftl 123 (155)
++|-||+|||=-|
T Consensus 9 i~G~~GaGKTTll 21 (318)
T 1nij_A 9 LTGFLGAGKTTLL 21 (318)
T ss_dssp EEESSSSSCHHHH
T ss_pred EEecCCCCHHHHH
Confidence 6899999998443
No 326
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=21.82 E-value=24 Score=24.38 Aligned_cols=12 Identities=42% Similarity=0.714 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|=+|+|||
T Consensus 12 I~l~G~~GsGKs 23 (196)
T 2c95_A 12 IFVVGGPGSGKG 23 (196)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558899999997
No 327
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=21.37 E-value=23 Score=28.21 Aligned_cols=13 Identities=54% Similarity=0.945 Sum_probs=10.2
Q ss_pred eeeeeccCCCcee
Q psy13769 109 LRFVGRSGRGKSF 121 (155)
Q Consensus 109 LRFvGRSGRGKsf 121 (155)
+-.+|.||+|||-
T Consensus 34 i~I~G~sGsGKST 46 (290)
T 1odf_A 34 IFFSGPQGSGKSF 46 (290)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 3467899999984
No 328
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=21.34 E-value=23 Score=25.39 Aligned_cols=13 Identities=46% Similarity=0.808 Sum_probs=10.9
Q ss_pred ceeeeeccCCCce
Q psy13769 108 DLRFVGRSGRGKS 120 (155)
Q Consensus 108 DLRFvGRSGRGKs 120 (155)
.+=++|.+|.|||
T Consensus 15 ki~v~G~~~vGKS 27 (223)
T 3cpj_B 15 KIVLIGDSGVGKS 27 (223)
T ss_dssp EEEEESCTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 3568999999997
No 329
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=21.29 E-value=23 Score=31.48 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=14.0
Q ss_pred cceeeeeccCCCceeEEEE
Q psy13769 107 NDLRFVGRSGRGKSFTLSI 125 (155)
Q Consensus 107 NDLRFvGRSGRGKsftltI 125 (155)
.=+=.+|.||.|||=-|.|
T Consensus 118 e~~~LiG~NGsGKSTLlki 136 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKI 136 (607)
T ss_dssp SEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHH
Confidence 3456799999999855444
No 330
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=21.18 E-value=25 Score=24.34 Aligned_cols=12 Identities=33% Similarity=0.731 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=+.|-+|+|||
T Consensus 15 I~l~G~~GsGKs 26 (199)
T 2bwj_A 15 IFIIGGPGSGKG 26 (199)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 557899999998
No 331
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=21.07 E-value=23 Score=29.12 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=+|||+|.|||
T Consensus 6 V~ivG~~nvGKS 17 (436)
T 2hjg_A 6 VAIVGRPNVGKS 17 (436)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999997
No 332
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=20.94 E-value=24 Score=25.02 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=++|-+|+|||
T Consensus 13 I~l~G~~GsGKS 24 (184)
T 1y63_A 13 ILITGTPGTGKT 24 (184)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 557899999998
No 333
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=20.76 E-value=24 Score=29.32 Aligned_cols=11 Identities=36% Similarity=0.730 Sum_probs=9.5
Q ss_pred eeeeccCCCce
Q psy13769 110 RFVGRSGRGKS 120 (155)
Q Consensus 110 RFvGRSGRGKs 120 (155)
=|+|.+|.|||
T Consensus 30 ~i~G~nG~GKt 40 (359)
T 2o5v_A 30 GIYGENGAGKT 40 (359)
T ss_dssp EEECCTTSSHH
T ss_pred EEECCCCCChh
Confidence 47899999986
No 334
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=20.71 E-value=24 Score=25.34 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=11.4
Q ss_pred CccchhcchhhhhhhcccccccceeeeeccCCCce
Q psy13769 86 DNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKS 120 (155)
Q Consensus 86 En~~aELRN~tavmknqvA~FNDLRFvGRSGRGKs 120 (155)
||..+|-|.....++. | -+=++|.+|.|||
T Consensus 12 ~~~~~q~~~~~~~~~~----~-ki~vvG~~~vGKS 41 (214)
T 3q3j_B 12 ENLYFQGRAPQPVVAR----C-KLVLVGDVQCGKT 41 (214)
T ss_dssp ---------------C----E-EEEEECSTTSSHH
T ss_pred hhhHhhccCCCCccce----E-EEEEECcCCCCHH
Confidence 4555666666554432 2 3558999999996
No 335
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=20.40 E-value=28 Score=27.26 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=9.7
Q ss_pred eeeeeccCCCce
Q psy13769 109 LRFVGRSGRGKS 120 (155)
Q Consensus 109 LRFvGRSGRGKs 120 (155)
+=+.|=||+|||
T Consensus 36 ivl~G~sGsGKS 47 (287)
T 1gvn_B 36 FLLGGQPGSGKT 47 (287)
T ss_dssp EEEECCTTSCTH
T ss_pred EEEECCCCCCHH
Confidence 446789999997
No 336
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=20.34 E-value=51 Score=28.87 Aligned_cols=100 Identities=11% Similarity=0.186 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhhccceeecCCCcEEeecCCC--ccccC-CCCCcceE----------EEEee-----cCCCCeEEEEeec
Q psy13769 22 MFAGIHEALQEYHGELVQTGSPTILCSVLPT--HWRSN-KSLPIAFK----------VVVLD-----DVMDGTIVTIRAG 83 (155)
Q Consensus 22 ~~~~~~~~l~~~~gelv~T~sP~~lCs~LP~--HWRsN-KtLP~~Fk----------VvaL~-----~VpDGT~Vtv~AG 83 (155)
+..+|..++.++... ..+.|.=.|-..|. .|--. ...+-++- +|.|. +|.+..--.+.--
T Consensus 55 ~~~~l~~~~~d~~~~--~~~~~~~~~~~~~~~~~w~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 132 (446)
T 3vkw_A 55 AVSNLVKILKDTAAI--DLETRQKFGVLDVASKRWLVKPSAKNHAWGVVETHARKYHVALLEHDEFGIITCDNWRRVAVS 132 (446)
T ss_dssp HHHHHHHHHHSSSCC--CCSSCBSEEEEETTTTEEEECBSSCSCSEEEEEETTCCEEEEECCCCSSSCCCCTTEEEEEEE
T ss_pred cHHHHHHHHHHhccc--cccCCccceEEEccCCeEecCCCCCCcceEEEEecCCceEEEEeeccCCCccccccccEEEEE
Confidence 345788888888643 55666666665553 46421 12222332 23331 2333333333333
Q ss_pred CCCccchhc---chhhhhhhcccccccceee---eeccCCCceeEE
Q psy13769 84 NDDNYCGEL---RNCTAVVKNQVAKFNDLRF---VGRSGRGKSFTL 123 (155)
Q Consensus 84 NDEn~~aEL---RN~tavmknqvA~FNDLRF---vGRSGRGKsftl 123 (155)
+|+-.+.++ +|-.+++|....++..-++ .|.-|.|||+.|
T Consensus 133 ~~t~l~~~~~~l~~l~~~~~~~~~~~~~~~v~~I~G~aGsGKTt~I 178 (446)
T 3vkw_A 133 SESVVYSDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEI 178 (446)
T ss_dssp GGGSCCHHHHHHHHHHTTCBTTBCCCCCSEEEEEEECTTSCHHHHH
T ss_pred CCchhhccHHHHHHHHHHHhhhccccccccEEEEEcCCCCCHHHHH
Confidence 444444443 3555556655666666665 689999999876
No 337
>1ww7_A Galectin; carbohydrate recognition domain,X-RAY crystallographic analysis, sulfate ION, sugar binding protein; 1.90A {Agrocybe cylindracea} PDB: 1ww4_A* 1ww6_A* 1ww5_A 2zgl_A 2zgm_A* 2zgn_A* 3afk_A* 3m3c_A* 3m3q_A* 2zgk_A 2zgs_A 2zgq_A 2zgr_A 3m3e_A* 2zgo_A* 3m3o_A* 2zgp_A 2zgu_A 2zgt_A
Probab=20.20 E-value=73 Score=24.27 Aligned_cols=13 Identities=8% Similarity=0.189 Sum_probs=10.9
Q ss_pred CceeEEEEEEecC
Q psy13769 118 GKSFTLSIMVGSS 130 (155)
Q Consensus 118 GKsftltItv~t~ 130 (155)
|+.|.|.|.+.-.
T Consensus 99 G~~F~i~I~~~~~ 111 (160)
T 1ww7_A 99 GGKAMVTVFDHGD 111 (160)
T ss_dssp SSCEEEEEEECSS
T ss_pred CCCEEEEEEEeCC
Confidence 9999999987754
No 338
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=20.17 E-value=25 Score=27.90 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=10.1
Q ss_pred eeeccCCCceeE
Q psy13769 111 FVGRSGRGKSFT 122 (155)
Q Consensus 111 FvGRSGRGKsft 122 (155)
++|.+|.|||=-
T Consensus 28 i~G~NGsGKS~l 39 (339)
T 3qkt_A 28 IIGQNGSGKSSL 39 (339)
T ss_dssp EECCTTSSHHHH
T ss_pred EECCCCCCHHHH
Confidence 789999999843
Done!