RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13769
(155 letters)
>gnl|CDD|109891 pfam00853, Runt, Runt domain.
Length = 134
Score = 251 bits (643), Expect = 1e-87
Identities = 98/129 (75%), Positives = 114/129 (88%)
Query: 26 IHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGND 85
+ E L E+ GELV+TGSP LCSVLP+HWRSNK+LP+AFKVV L +V DGT+VTIRAGND
Sbjct: 3 VVEVLAEHPGELVKTGSPNFLCSVLPSHWRSNKTLPVAFKVVALGEVPDGTMVTIRAGND 62
Query: 86 DNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTV 145
+NYC ELRN TAV+KNQVAKFNDLRFVGRSGRGKSFTL+I + ++P Q+A+YNKAIKVTV
Sbjct: 63 ENYCAELRNATAVMKNQVAKFNDLRFVGRSGRGKSFTLTITIATNPPQVATYNKAIKVTV 122
Query: 146 DGPREPRSK 154
DGPREPR K
Sbjct: 123 DGPREPRRK 131
>gnl|CDD|224135 COG1214, COG1214, Inactive homolog of metal-dependent proteases,
putative molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 220
Score = 28.9 bits (65), Expect = 0.87
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 7/77 (9%)
Query: 78 VTIRAGNDDNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPH--QIA 135
V I A + Y E + + + V +L + K + +++G + A
Sbjct: 115 VAIDARRGEVYWAEYQRSGGLEEEAVLSAEELFE-----KLKEASAYVLIGWGAIALEEA 169
Query: 136 SYNKAIKVTVDGPREPR 152
+ + P
Sbjct: 170 PLLELEFLEDFLPTAAD 186
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 28.3 bits (64), Expect = 1.3
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
F+G +G GK+ T+ I++G
Sbjct: 31 FLGPNGAGKTTTMKIILG 48
>gnl|CDD|221135 pfam11566, PI31_Prot_N, PI31 proteasome regulator N-terminal.
PI31 is a regulatory subunit of the immuno-proteasome
which is an inhibitor of the 20 S proteasome in
vitro.PI31 is also an F-box protein Fbxo7.Skp1 binding
partner which requires an N terminal FP domain in both
proteins for the interaction to occur via the FP beta
sheets. The structure of PI31 FP domain contains a
novel alpha/beta-fold and two intermolecular contact
surfaces. This is the N-terminal domain of the members.
Length = 147
Score = 27.7 bits (62), Expect = 1.8
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 1 MHLPSSKSPEMSSSIEAMTSDMFAGIHEALQEYHGELVQTGSPTIL---CSVLPTHWRSN 57
M L S S ++ +A+ +H L E LV G L +LP W SN
Sbjct: 1 MLLLLSISADLKLKSDALA----LFVHALLLESGFRLVGLGDEKKLKESEELLPPGWNSN 56
Query: 58 K 58
K
Sbjct: 57 K 57
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 27.7 bits (62), Expect = 2.6
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 90 GELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFT-LSIM 126
+R V Q+ L VG SG GKS T LSI+
Sbjct: 19 QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL 56
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein
which is localized in the photoreceptor outer segment
discs. Mutation/s in its genetic loci is implicated in
the recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 27.7 bits (61), Expect = 3.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 111 FVGRSGRGKSFTLSIMVGSSP 131
F+G +G GK+ TLSI+ G P
Sbjct: 961 FLGHNGAGKTTTLSILTGLLP 981
>gnl|CDD|187774 cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR
(Clustered Regularly Interspaced Short Palindromic
Repeats) and associated Cas proteins comprise a system
for heritable host defense by prokaryotic cells against
phage and other foreign DNA; Very large protein
containing McrA/HNH-nuclease related domain and a
RuvC-like nuclease domain; signature gene for type II.
Length = 799
Score = 27.0 bits (60), Expect = 5.6
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 27 HEALQEYHGELVQTGSPTIL----------CSVLPTHWRSNKSLPIAFKVVVLDDVMDGT 76
L E E P + C+ LP R+ K +A K VL+++ +
Sbjct: 240 IGPLAEGKSEFAWLTRPALSEAFIEKMTGKCTYLPEEKRAPKHSLLAEKFTVLNELNNLR 299
Query: 77 IVTI 80
I+
Sbjct: 300 IIEE 303
>gnl|CDD|218507 pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.
Length = 430
Score = 26.6 bits (59), Expect = 6.8
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 64 FKVVVLDDVM-DGTIVTIRAGNDDNYCGE 91
++VV L++V+ D I G D G
Sbjct: 254 YQVVTLEEVVKDADIFVTTTGCVDIIVGR 282
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 26.5 bits (59), Expect = 7.1
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 98 VVKN---QVAKFNDLRFVGRSGRGKS-FTLSIMVGSSPHQIASY 137
VK + L VG SG GKS LSI+ G P A++
Sbjct: 25 AVKGISFDIEAGETLALVGESGSGKSVTALSIL-GLLPSPAAAH 67
>gnl|CDD|224329 COG1411, COG1411, Uncharacterized protein related to proFAR
isomerase (HisA) [General function prediction only].
Length = 229
Score = 26.3 bits (58), Expect = 7.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 64 FKVVVLDDVMDGTIVTIRAGNDDNY 88
KV+ + D+ DG +V ++G + Y
Sbjct: 1 MKVIFVIDIKDGKVVVGKSGEREEY 25
>gnl|CDD|238062 cd00114, LIGANc, NAD+ dependent DNA ligase adenylation domain.
DNA ligases catalyze the crucial step of joining the
breaks in duplex DNA during DNA replication, repair and
recombination, utilizing either ATP or NAD(+) as a
cofactor, but using the same basic reaction mechanism.
The enzyme reacts with the cofactor to form a
phosphoamide-linked AMP with the amino group of a
conserved Lysine in the KXDG motif, and subsequently
transfers it to the DNA substrate to yield adenylated
DNA. This alignment contains members of the NAD+
dependent subfamily only.
Length = 307
Score = 26.0 bits (58), Expect = 9.4
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 28 EALQEYHGELVQTGSPTI 45
AL+E H EL SPT
Sbjct: 38 RALEEEHPELKTPDSPTQ 55
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 26.1 bits (58), Expect = 9.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
+G +G GK+ L I+ G
Sbjct: 36 LLGPNGAGKTTLLKILAG 53
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.380
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,605,485
Number of extensions: 667032
Number of successful extensions: 780
Number of sequences better than 10.0: 1
Number of HSP's gapped: 780
Number of HSP's successfully gapped: 20
Length of query: 155
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 66
Effective length of database: 6,990,096
Effective search space: 461346336
Effective search space used: 461346336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)