RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13769
(155 letters)
>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute
myeloid leukemia, AML, RUNX1, RUNT domain, chloride
binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP:
b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A
1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A
Length = 140
Score = 203 bits (518), Expect = 8e-69
Identities = 90/130 (69%), Positives = 108/130 (83%)
Query: 26 IHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGND 85
+ E L ++ GELV+T SP L SVLPTHWRSNK+LPIAFKVV L DV DGT+VT+ AGND
Sbjct: 6 MVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGND 65
Query: 86 DNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTV 145
+NY ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TV
Sbjct: 66 ENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITV 125
Query: 146 DGPREPRSKS 155
DGPREPR
Sbjct: 126 DGPREPRRHR 135
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.049
Identities = 18/159 (11%), Positives = 45/159 (28%), Gaps = 40/159 (25%)
Query: 1 MHLPSSKSPEMSSSIEAMTSDMFAGIHEALQEYHGELVQTGSPTILCSVLPTHWR---SN 57
++L + SPE ++ M + ++ + + + + + R +
Sbjct: 187 LNLKNCNSPE---TVLEMLQKLL---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 58 KSLPIAFKVVVLDDVMDGTIVTIRAGND--DNYCGEL-----RNCTAVVKNQVAKFNDLR 110
K ++VL +V + + + C L + T + +
Sbjct: 241 KPYENC--LLVLLNVQNAKAW------NAFNLSCKILLTTRFKQVTDFLSAATTT--HIS 290
Query: 111 FVGRSGRGKSFT-----------LSIMVGSSPHQIASYN 138
S + T L P ++ + N
Sbjct: 291 LDHHS---MTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.28
Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 50/161 (31%)
Query: 5 SSKSPE--MSSSIEAMTSDMFAGI--HEA----------LQEY--HGELVQTGSPTILCS 48
+ S E S +A+T F G+ +EA L++ + E G P+ + S
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE----GVPSPMLS 340
Query: 49 V-------LPTH-WRSNKSLPIAFKVVV-LDDVMDGTIVTIRAGN-DDNY--CGELRNCT 96
+ + + ++N LP +V + L + +V+ G Y LR
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS---GPPQSLYGLNLTLRKAK 397
Query: 97 AVV-KNQV-AKFND--LRFVGRSGRGKSFTLSIMVGSSP-H 132
A +Q F++ L+F R F L + +SP H
Sbjct: 398 APSGLDQSRIPFSERKLKFSNR------F-LPV---ASPFH 428
Score = 26.2 bits (57), Expect = 6.3
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 83 GNDDNYCGELRN 94
GN D+Y ELR+
Sbjct: 164 GNTDDYFEELRD 175
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 29.6 bits (67), Expect = 0.45
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 112 VGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPR 149
VG +G GK+ + I+ G + N + + R
Sbjct: 123 VGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 2.5
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 18/47 (38%)
Query: 100 KNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVD 146
K + K K + S+P A AIK T++
Sbjct: 19 KQALKKL--------QASLKLYA----DDSAP---AL---AIKATME 47
>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta
sandwich, function, structural genomics, TB structural
genomics conso TBSGC; 1.57A {Mycobacterium smegmatis}
Length = 168
Score = 25.7 bits (56), Expect = 5.2
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 53 HWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGNDD 86
+ N LP++ V + GT T
Sbjct: 99 DFNPNTDLPVSTNVYTFTEHDGGTRATYVGTYAS 132
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 26.1 bits (58), Expect = 5.6
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 111 FVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPR 149
VG +G GKS + I+ G + N + + R
Sbjct: 52 IVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFR 90
>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom
cerevisiae, structural genomics, PSI-2, protein
structure initiative; 1.60A {Saccharomyces cerevisiae}
Length = 275
Score = 25.9 bits (57), Expect = 5.9
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 56 SNKSLPIAFKVVVLDDVMDGTIV 78
+ K L + + D +DGTI+
Sbjct: 27 TTKPLSLKINAALFD--VDGTII 47
>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune
system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A
Length = 119
Score = 25.2 bits (56), Expect = 6.3
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 6/30 (20%)
Query: 110 RFVGRSGRGKSFTLSIMVGSS--PHQIASY 137
RF G SG G+ ++ SI S+ P A+Y
Sbjct: 63 RFSG-SGSGRDYSFSI---SNLEPEDAATY 88
>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain
amyloidosis, amyloid, immunoglobulin, protein fibril;
1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A
3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A
3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A
...
Length = 109
Score = 25.2 bits (56), Expect = 6.7
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 6/30 (20%)
Query: 110 RFVGRSGRGKSFTLSIMVGSS--PHQIASY 137
RF G SG G FT +I SS P IA+Y
Sbjct: 63 RFSG-SGSGTDFTFTI---SSLQPEDIATY 88
>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like
beta-sandwich, stalk region, immune system; 2.80A
{Ictalurus punctatus}
Length = 137
Score = 25.3 bits (56), Expect = 6.9
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 6/32 (18%)
Query: 108 DLRFVGRSGRGKSFTLSIMVGSS--PHQIASY 137
D RF + + F L+I Y
Sbjct: 64 DSRFSM-TVNDQKFDLNI---IGAREDDGGEY 91
>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome
C oxidase, high- resolution structure, immune system;
1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D*
3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A
1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L
1g7l_A 1g7m_A 1a7n_L ...
Length = 120
Score = 25.2 bits (56), Expect = 7.3
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 110 RFVGRSGRGKSFTLSIMVGSS--PHQIASY 137
RF G SG G F+L I +S P SY
Sbjct: 61 RFSG-SGSGTQFSLKI---NSLLPEDFGSY 86
>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like
beta-sandwich, immune system; 1.56A {Ictalurus
punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A
Length = 111
Score = 24.9 bits (55), Expect = 7.6
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 6/32 (18%)
Query: 108 DLRFVGRSGRGKSFTLSIMVGSS--PHQIASY 137
D RF + + F L+I Y
Sbjct: 64 DSRFSM-TVNDQKFDLNI---IGTREDDGGEY 91
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 25.8 bits (57), Expect = 7.8
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 112 VGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGPREPRSK 154
VG +G GKS L I+ G + ++ + S+
Sbjct: 109 VGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSE 151
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen);
2.40A {Mus musculus} SCOP: b.1.1.1
Length = 108
Score = 24.8 bits (55), Expect = 7.8
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 110 RFVGRSGRGKSFTLSIMVGSS--PHQIASY 137
RF G SG G FTL+I SS P A Y
Sbjct: 61 RFSG-SGSGTDFTLTI---SSLEPEDFAMY 86
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain;
antibody-peptide complex, immunoglobulin fold, type II'
beta turn., immune system; 1.80A {Mus musculus} SCOP:
b.1.1.1 PDB: 1i8i_A
Length = 107
Score = 24.8 bits (55), Expect = 9.1
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 6/30 (20%)
Query: 110 RFVGRSGRGKSFTLSIMVGSS--PHQIASY 137
RF SG G F +I + + Y
Sbjct: 61 RFSS-SGTGTDFVFTI---ENTLSEDVGDY 86
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 25.4 bits (56), Expect = 9.6
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 112 VGRSGRGKSFTLSIMVG 128
+G++G GK+ L I+ G
Sbjct: 31 LGKNGVGKTTVLKILAG 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.380
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,323,449
Number of extensions: 132180
Number of successful extensions: 519
Number of sequences better than 10.0: 1
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 35
Length of query: 155
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 69
Effective length of database: 4,300,587
Effective search space: 296740503
Effective search space used: 296740503
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.0 bits)