RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13769
(155 letters)
>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 233 bits (596), Expect = 3e-81
Identities = 86/123 (69%), Positives = 104/123 (84%)
Query: 26 IHEALQEYHGELVQTGSPTILCSVLPTHWRSNKSLPIAFKVVVLDDVMDGTIVTIRAGND 85
+ E L ++ GELV+T SP L SVLPTHWRSNK+LPIAFKVV L DV DGT+VT+ AGND
Sbjct: 2 MVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGND 61
Query: 86 DNYCGELRNCTAVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTV 145
+NY ELRN TA +KNQVA+FNDLRFVGRSGRGKSFTL+I V ++P Q+A+Y++AIK+TV
Sbjct: 62 ENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITV 121
Query: 146 DGP 148
DGP
Sbjct: 122 DGP 124
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 26.8 bits (59), Expect = 1.1
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 111 FVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
VGRSG GKS ++ + +V +DG
Sbjct: 34 IVGRSGSGKSTLTKLIQRFYIPE------NGQVLIDG 64
>d2joqa1 d.58.54.2 (A:4-89) Hypothetical protein HP0495
{Helicobacter pylori [TaxId: 210]}
Length = 86
Score = 25.2 bits (55), Expect = 1.7
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 97 AVVKNQVAKFNDLRFVGRSGRGKSFTLSIMVGSSPHQIASYNK 139
+ K ++ + SF +S+ V + + + K
Sbjct: 34 LETYQRPFKLEFKN-TSKNAKFYSFNVSMEVSNESERNEIFQK 75
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 25.7 bits (56), Expect = 2.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
FVG SG GKS L ++ G
Sbjct: 31 FVGPSGCGKSTLLRMIAG 48
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 25.7 bits (56), Expect = 2.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
+G +G GKS L ++ G
Sbjct: 29 LLGPTGAGKSVFLELIAG 46
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 25.8 bits (56), Expect = 2.4
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
+G +G GK+ L ++ G
Sbjct: 31 ILGPTGAGKTLFLELIAG 48
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 25.6 bits (56), Expect = 2.4
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 111 FVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
VG +G GKS +++ ++ +DG
Sbjct: 45 LVGPNGSGKSTVAALLQNLYQPT------GGQLLLDG 75
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 25.5 bits (56), Expect = 2.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
FVG SG GKS ++++
Sbjct: 49 FVGMSGGGKSTLINLIPR 66
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 25.7 bits (56), Expect = 2.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
+G SG GK+ TL ++ G
Sbjct: 34 LLGPSGCGKTTTLRMIAG 51
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 25.6 bits (56), Expect = 2.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
G +G GK+ L +++G
Sbjct: 67 ITGSTGSGKTSLLMLILG 84
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 25.3 bits (55), Expect = 3.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
VG +G GKS L+ M G
Sbjct: 30 LVGPNGAGKSTLLARMAG 47
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 25.4 bits (55), Expect = 3.2
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
+G SG GK+ + I+ G
Sbjct: 36 ILGPSGAGKTTFMRIIAG 53
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 25.1 bits (55), Expect = 3.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
+G SG GK+ TL ++ G
Sbjct: 37 LLGPSGCGKTTTLRMIAG 54
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 25.2 bits (55), Expect = 3.3
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
+G SG GKS L +
Sbjct: 33 IIGSSGSGKSTFLRCINF 50
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 24.9 bits (54), Expect = 4.1
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
F G +G GK+ L +
Sbjct: 32 FHGPNGIGKTTLLKTIST 49
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 24.8 bits (54), Expect = 4.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
+G SG GKS L+I+
Sbjct: 36 IMGPSGSGKSTMLNIIGC 53
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 24.8 bits (54), Expect = 4.5
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
+G SG GKS + +
Sbjct: 36 VIGASGAGKSTLIRCVNL 53
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 24.8 bits (54), Expect = 4.8
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
F G SG GKS S++
Sbjct: 33 FAGPSGGGKSTIFSLLER 50
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 24.8 bits (54), Expect = 5.5
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 111 FVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDGP 148
VGRSG GKS S++ + +DG
Sbjct: 46 LVGRSGSGKSTIASLITRFYDIDEGH------ILMDGH 77
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 24.6 bits (53), Expect = 5.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
+G +G GK+ TL I+
Sbjct: 33 LIGPNGAGKTTTLRIIST 50
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 24.5 bits (52), Expect = 5.7
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 8/37 (21%)
Query: 111 FVGRSGRGKSFTLSIMVGSSPHQIASYNKAIKVTVDG 147
VG RGK+ +S ++ Y I V
Sbjct: 7 MVGLPARGKT-YIS-------KKLTRYLNFIGVPTRE 35
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 23.8 bits (51), Expect = 7.2
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 9/31 (29%)
Query: 12 SSSIEAMTSDMFAGIHE---------ALQEY 33
SS +E+ D+ AG+H L +Y
Sbjct: 5 SSGLESEEVDLNAGLHGNWTLENAKARLNQY 35
>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli
[TaxId: 562]}
Length = 87
Score = 23.6 bits (51), Expect = 7.3
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 97 AVVKNQVAKFNDLRF-VGRSGRGKSFTLSIMVGSSPHQIASYNKA 140
VV+ G S +++I Y +
Sbjct: 33 EVVQRHAPGDYTPTVKPSSKGNYHSVSITINATHIEQVETLYEEL 77
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 24.1 bits (52), Expect = 7.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
+G +G GK+ TLS + G
Sbjct: 37 LIGANGAGKTTTLSAIAG 54
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 24.2 bits (52), Expect = 8.0
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 111 FVGRSGRGKSFTLSIMVG 128
+G +G GKS ++++ G
Sbjct: 35 IIGPNGSGKSTLINVITG 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.380
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 557,725
Number of extensions: 24298
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 28
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.9 bits)