BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13770
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A35|A Chain A, Crystal Structure Of Human Mitochondrial Enolase
Superfamily Member 1 (Enosf1)
Length = 441
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 7 GAQLKDSLRRTELKRDLTSPLKVVLTSPPLK 37
GA L+D +RR ++ RD+ P K ++ +
Sbjct: 225 GADLQDDMRRCQIIRDMIGPEKTLMMDANQR 255
>pdb|2VJX|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VJX|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VOT|A Chain A, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VOT|B Chain B, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VQT|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQT|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VR4|A Chain A, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
pdb|2VR4|B Chain B, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
Length = 846
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 5 RSGAQLKDSLRRTELKRDLTSP-----LKVVLTSPPLKVVLTSPPL-KGVLASPPLKGVL 58
+SG Q+ +S+ +DL P ++ T ++ L S L K + PL+G
Sbjct: 739 KSGHQVAESVHFFRKTKDLQLPPTSVSYQMKQTDGKCELTLFSSMLAKDIFIETPLQGAR 798
Query: 59 ASPPLKGVLTSPPLKVVLTSPPLK 82
S +L KV++TSP +K
Sbjct: 799 YSDNFFDLLPGERKKVIITSPRIK 822
>pdb|2VQU|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQU|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
Length = 846
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 5 RSGAQLKDSLRRTELKRDLTSP-----LKVVLTSPPLKVVLTSPPL-KGVLASPPLKGVL 58
+SG Q+ +S+ +DL P ++ T ++ L S L K + PL+G
Sbjct: 739 KSGHQVAESVHFFRKTKDLQLPPTSVSYQMKQTDGKCELTLFSSMLAKDIFIETPLQGAR 798
Query: 59 ASPPLKGVLTSPPLKVVLTSPPLK 82
S +L KV++TSP +K
Sbjct: 799 YSDNFFDLLPGERKKVIITSPRIK 822
>pdb|2JE8|A Chain A, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
pdb|2JE8|B Chain B, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
Length = 848
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 5 RSGAQLKDSLRRTELKRDLTSP-----LKVVLTSPPLKVVLTSPPL-KGVLASPPLKGVL 58
+SG Q+ +S+ +DL P ++ T ++ L S L K + PL+G
Sbjct: 741 KSGHQVAESVHFFRKTKDLQLPPTSVSYQMKQTDGKCELTLFSSMLAKDIFIETPLQGAR 800
Query: 59 ASPPLKGVLTSPPLKVVLTSPPLK 82
S +L KV++TSP +K
Sbjct: 801 YSDNFFDLLPGERKKVIITSPRIK 824
>pdb|2WBK|A Chain A, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
pdb|2WBK|B Chain B, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
Length = 847
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 5 RSGAQLKDSLRRTELKRDLTSP-----LKVVLTSPPLKVVLTSPPL-KGVLASPPLKGVL 58
+SG Q+ +S+ +DL P ++ T ++ L S L K + PL+G
Sbjct: 739 KSGHQVAESVHFFRKTKDLQLPPTSVSYQMKQTDGKCELTLFSSMLAKDIFIETPLQGAR 798
Query: 59 ASPPLKGVLTSPPLKVVLTSPPLK 82
S +L KV++TSP +K
Sbjct: 799 YSDNFFDLLPGERKKVIITSPRIK 822
>pdb|2OSD|A Chain A, Crystal Structure Of A Vinyl-4-reductase Family Protein
(mj_1460) From Methanocaldococcus Jannaschii Dsm At 2.40
A Resolution
pdb|2OSO|A Chain A, Crystal Structure Of A Vinyl-4-Reductase Family Protein
(Mj_1460) From Methanocaldococcus Jannaschii Dsm At 1.90
A Resolution
Length = 163
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 28 KVVLTSPPLKVVLTSPPLKGVLASPPLKGVLA 59
K++L +PP K+ L++PP + V P+ +A
Sbjct: 90 KILLKNPPYKIKLSNPPYQWVSKEEPIHDFIA 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,655,732
Number of Sequences: 62578
Number of extensions: 171856
Number of successful extensions: 331
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 30
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.1 bits)