BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13770
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P15941|MUC1_HUMAN Mucin-1 OS=Homo sapiens GN=MUC1 PE=1 SV=3
Length = 1255
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 18/162 (11%)
Query: 23 LTSPLKVVLTSPPLKVV--LTSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV-- 75
T P V ++P K T+PP GV ++P P G A PP GV ++P +
Sbjct: 111 TTPPAHDVTSAPDNKPAPGSTAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPG 169
Query: 76 LTSPPLKGVLTYPLLKGV--LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV- 129
T+PP GV + P + T+PP GV ++P P G A PP GV ++P +
Sbjct: 170 STAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAP 228
Query: 130 -LTYPPLKGVLTYPPLKGV--LTSPPLKGVLTSPPLKGVPNS 168
T PP GV + P + T+PP GV ++P + P S
Sbjct: 229 GSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGS 270
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 151 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 209
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 210 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 268
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 269 GSTAPPAHGVTSAPDTRPAPGS 290
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 171 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 229
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 230 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 288
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 289 GSTAPPAHGVTSAPDTRPAPGS 310
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 191 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 249
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 250 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 308
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 309 GSTAPPAHGVTSAPDTRPAPGS 330
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 211 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 269
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 270 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 328
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 329 GSTAPPAHGVTSAPDTRPAPGS 350
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 231 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 289
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 290 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 348
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 349 GSTAPPAHGVTSAPDTRPAPGS 370
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 251 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 309
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 310 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 368
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 369 GSTAPPAHGVTSAPDTRPAPGS 390
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 271 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 329
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 330 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 388
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 389 GSTAPPAHGVTSAPDTRPAPGS 410
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 291 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 349
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 350 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 408
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 409 GSTAPPAHGVTSAPDTRPAPGS 430
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 311 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 369
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 370 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 428
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 429 GSTAPPAHGVTSAPDTRPAPGS 450
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 331 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 389
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 390 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 448
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 449 GSTAPPAHGVTSAPDTRPAPGS 470
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 351 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 409
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 410 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 468
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 469 GSTAPPAHGVTSAPDTRPAPGS 490
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 371 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 429
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 430 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 488
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 489 GSTAPPAHGVTSAPDTRPAPGS 510
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 391 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 449
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 450 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 508
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 509 GSTAPPAHGVTSAPDTRPAPGS 530
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 411 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 469
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 470 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 528
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 529 GSTAPPAHGVTSAPDTRPAPGS 550
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 431 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 489
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 490 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 548
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 549 GSTAPPAHGVTSAPDTRPAPGS 570
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 451 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 509
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 510 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 568
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 569 GSTAPPAHGVTSAPDTRPAPGS 590
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 471 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 529
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 530 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 588
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 589 GSTAPPAHGVTSAPDTRPAPGS 610
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 491 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 549
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 550 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 608
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 609 GSTAPPAHGVTSAPDTRPAPGS 630
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 511 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 569
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 570 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 628
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 629 GSTAPPAHGVTSAPDTRPAPGS 650
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 531 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 589
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 590 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 648
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 649 GSTAPPAHGVTSAPDTRPAPGS 670
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 551 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 609
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 610 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 668
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 669 GSTAPPAHGVTSAPDTRPAPGS 690
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 571 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 629
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 630 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 688
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 689 GSTAPPAHGVTSAPDTRPAPGS 710
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 591 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 649
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 650 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 708
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 709 GSTAPPAHGVTSAPDTRPAPGS 730
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 611 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 669
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 670 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 728
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 729 GSTAPPAHGVTSAPDTRPAPGS 750
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 631 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 689
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 690 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 748
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 749 GSTAPPAHGVTSAPDTRPAPGS 770
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 651 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 709
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 710 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 768
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 769 GSTAPPAHGVTSAPDTRPAPGS 790
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 671 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 729
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 730 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 788
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 789 GSTAPPAHGVTSAPDTRPAPGS 810
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 691 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 749
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 750 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 808
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 809 GSTAPPAHGVTSAPDTRPAPGS 830
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 711 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 769
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 770 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 828
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 829 GSTAPPAHGVTSAPDTRPAPGS 850
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 731 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 789
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 790 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 848
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 849 GSTAPPAHGVTSAPDTRPAPGS 870
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 751 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 809
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 810 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 868
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 869 GSTAPPAHGVTSAPDTRPAPGS 890
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 771 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 829
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 830 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 888
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 889 GSTAPPAHGVTSAPDTRPAPGS 910
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 41 TSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV--LTSPPLKGVLTYPLLKGV-- 93
T+PP GV ++P P G A PP GV ++P + T+PP GV + P +
Sbjct: 791 TAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPG 849
Query: 94 LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKGV--LTYPPLKGVLTYPPLKGV- 147
T+PP GV ++P P G A PP GV ++P + T PP GV + P +
Sbjct: 850 STAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 908
Query: 148 -LTSPPLKGVLTSPPLKGVPNS 168
T+PP GV ++P + P S
Sbjct: 909 GSTAPPAHGVTSAPDTRPAPGS 930
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 21/164 (12%)
Query: 19 LKRDLTSPLKVVLTSPPLKVVLTSPPLKGVLASP---PLKGVLASPPLKGVLTSPPLKVV 75
+D+TS V +T P L T+PP V ++P P G A PP GV ++P +
Sbjct: 94 WGQDVTS---VPVTRPALG--STTPPAHDVTSAPDNKPAPGSTA-PPAHGVTSAPDTRPA 147
Query: 76 --LTSPPLKGVLTYPLLKGV--LTSPPLKGVLTSP---PLKGVLASPPLKGVLASPPLKG 128
T+PP GV + P + T+PP GV ++P P G A PP GV ++P +
Sbjct: 148 PGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTA-PPAHGVTSAPDTRP 206
Query: 129 V--LTYPPLKGVLTYPPLKGV--LTSPPLKGVLTSPPLKGVPNS 168
T PP GV + P + T+PP GV ++P + P S
Sbjct: 207 APGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGS 250
>sp|A8MUU9|YV023_HUMAN Putative uncharacterized protein ENSP00000383309 OS=Homo sapiens
PE=5 SV=3
Length = 505
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 9/137 (6%)
Query: 33 SPPLKVVLTSPPLKGVLASPPLKGVLASPPL--------KGVLTSPPLKVVLTSPPLKGV 84
SPP + +PP + SPP + +PP + LT P LT P +
Sbjct: 303 SPPRASLTRTPPTASLTRSPPTASLTRTPPRASLTRSPPRASLTRTPSTASLTRTPSRAS 362
Query: 85 LTYPLLKGVLTSPPLKGVLT-SPPLKGVLASPPLKGVLASPPLKGVLTYPPLKGVLTYPP 143
LT + T P + LT +PP + +PP + SPP + PP + PP
Sbjct: 363 LTRSKSRASHTRTPSRASLTRTPPRASLTRTPPRASLTRSPPTASLTRMPPTASLTRSPP 422
Query: 144 LKGVLTSPPLKGVLTSP 160
+ +PP + SP
Sbjct: 423 RASLTRTPPRASLTRSP 439
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 56/145 (38%), Gaps = 22/145 (15%)
Query: 25 SPLKVVLT-SPPLKVVLTSPPLKGVLASPPLKGVLASPPLKGVLTSPPLKVVLTSPPLKG 83
SP + LT +PP + SPP + +PP + SPP + LT P LT P +
Sbjct: 303 SPPRASLTRTPPTASLTRSPPTASLTRTPPRASLTRSPP-RASLTRTPSTASLTRTPSRA 361
Query: 84 VLTYPLLKGVLTSPPLKGVLT-------------------SPPLKGVLASPPLKGVLASP 124
LT + T P + LT SPP + PP + SP
Sbjct: 362 SLTRSKSRASHTRTPSRASLTRTPPRASLTRTPPRASLTRSPPTASLTRMPPTASLTRSP 421
Query: 125 PLKGVLTYPPLKGVLTYPPLKGVLT 149
P + LT P + LT P LT
Sbjct: 422 P-RASLTRTPPRASLTRSPSTASLT 445
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 3/139 (2%)
Query: 25 SPLKVVLTSPPLKVVLTSPPLKGVLASPPLKGVLASPPLKGVLTSPPLKVVLTSPPLKGV 84
+P + LT P + LT P L P + L + T P + LT P +
Sbjct: 330 TPPRASLTRSPPRASLTRTPSTASLTRTPSRASLTRSKSRASHTRTPSRASLTRTPPRAS 389
Query: 85 LTYPLLKGVLT-SPPLKGVLTSPPLKGVLASPPLKGVLASPPLKGVLTYPPLKGVLTY-P 142
LT + LT SPP + PP + SPP + +PP + LT P LT P
Sbjct: 390 LTRTPPRASLTRSPPTASLTRMPPTASLTRSPPRASLTRTPP-RASLTRSPSTASLTRTP 448
Query: 143 PLKGVLTSPPLKGVLTSPP 161
P + +PP + +PP
Sbjct: 449 PGTWLRRTPPRTSLTRTPP 467
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
Query: 28 KVVLTSPPLKVVLT-SPPLKGVLASPPLKGVLASPPLKGVLTSPPLKVVLTSPPLKGVLT 86
+ T P + LT +PP + +PP + SPP + PP + SPP +
Sbjct: 369 RASHTRTPSRASLTRTPPRASLTRTPPRASLTRSPPTASLTRMPPTASLTRSPPRASLTR 428
Query: 87 YPLLKGVLTSPPLKGVLTSPPLKGVLASPPLKGVLASPPLKGVLTYPPLKGVLTYPPLKG 146
P + SP + +PP + +PP + +PP LT P LT P
Sbjct: 429 TPPRASLTRSPSTASLTRTPPGTWLRRTPPRTSLTRTPPT-ASLTRTPYTASLTRTPYTA 487
Query: 147 VL 148
L
Sbjct: 488 SL 489
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 25 SPLKVVLTSPPLKVVLT-SPPLKGVLASPPLKGVLASPPLKGVLTSPPLKVVLTSPPLKG 83
+P + LT P + LT +PP + SPP + PP + SPP + +PP
Sbjct: 375 TPSRASLTRTPPRASLTRTPPRASLTRSPPTASLTRMPPTASLTRSPPRASLTRTPPRAS 434
Query: 84 VLTYPLLKGVLTSPPLKGVLTSPPLKGVLASPPLKGVLASPPLKGVLTYPPLKGVL 139
+ P + +PP + +PP + +PP L P LT P L
Sbjct: 435 LTRSPSTASLTRTPPGTWLRRTPPRTSLTRTPPT-ASLTRTPYTASLTRTPYTASL 489
>sp|B4YNE6|V6_SPTNK Collagen-like protein V6 OS=Sputnik virophage GN=ORF6 PE=3 SV=1
Length = 310
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 43/117 (36%), Gaps = 7/117 (5%)
Query: 50 ASPPLKGVLASPPLKGVLTSPPLKVVLTSPPLKGVLTYPLLKGVLTSPPLKGVLTSPPLK 109
S LKG S LKG S KG LKG + LKG + LK
Sbjct: 73 GSNGLKGETGSNGLKGETGSGD-------KGDKGDSGTDGLKGQAGTDGLKGQAGTDGLK 125
Query: 110 GVLASPPLKGVLASPPLKGVLTYPPLKGVLTYPPLKGVLTSPPLKGVLTSPPLKGVP 166
G + LKG + LKG +KG P G+ +G+ P KG P
Sbjct: 126 GDSGTDGLKGQTGNDGLKGQAGNDGIKGDKGEPGNDGLKGQTGTQGIKGDPGAKGDP 182
>sp|P08572|CO4A2_HUMAN Collagen alpha-2(IV) chain OS=Homo sapiens GN=COL4A2 PE=1 SV=4
Length = 1712
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 82 KGVLTYPLLKGVLTSPPLKGVLT---SPPLKGVLASPPLKGVLASPPLKGVLTYPPLKGV 138
+G + +G SP KG+ +P LKG SP + G P LKG +P KG
Sbjct: 889 RGDAGFTGEQGHPGSPGFKGIDGMPGTPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGE 948
Query: 139 LTY---PPLKGVLTSPPLK 154
+ P LKG+ P K
Sbjct: 949 AGFFGIPGLKGLAGEPGFK 967
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 46 KGVLASPPLKGVLA---SPPLKGVLTSPPLKVVLTSPPLKGVLTYPLLKGVLTSPPLKGV 102
+G SP KG+ +P LKG SP + P LKG +P KG G
Sbjct: 898 QGHPGSPGFKGIDGMPGTPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEA------GF 951
Query: 103 LTSPPLKGVLASPPLK 118
P LKG+ P K
Sbjct: 952 FGIPGLKGLAGEPGFK 967
>sp|P17139|CO4A1_CAEEL Collagen alpha-1(IV) chain OS=Caenorhabditis elegans GN=emb-9 PE=1
SV=4
Length = 1759
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 44/112 (39%), Gaps = 7/112 (6%)
Query: 46 KGVLASPPLKGVLASPPLKGVLTSPPLKVVLTSPPLKGVLTYPLLKGVLTSPPLKGVLTS 105
KG L G P L+G+ P LK P G +P + G L PP +
Sbjct: 90 KGARGDRGLPGSPGHPGLQGLDGLPGLKGEEGIPGCNGTDGFPGMPG-LAGPPGQSGQNG 148
Query: 106 PPLKGVLASPPLKGVLASPPLKGVLTY------PPLKGVLTYPPLKGVLTSP 151
P + L+ PP +G + S KGV P L G YP LKG P
Sbjct: 149 NPGRPGLSGPPGEGGVNSQGRKGVKGESGRSGVPGLPGNSGYPGLKGAKGDP 200
>sp|Q60754|MARCO_MOUSE Macrophage receptor MARCO OS=Mus musculus GN=Marco PE=1 SV=1
Length = 518
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 18/122 (14%)
Query: 45 LKGVLASPPLKGVLASPPLKGVLTSPPLKVVLTSPPLKGVLTYPLLKGVLTSPPLKGVLT 104
L+G+ +P +G +P +G S + LT P KG + KG L
Sbjct: 205 LQGLTGAPGKQGATGAPGPRGEKGSKG-DIGLTGP-----------KGEHGTKGDKGDLG 252
Query: 105 SPPLKGVLASPPLKGVLASPPLKGVLTYPPLKGVLTYPPLKGVLTSPPLKGVLTSPPLKG 164
P KG + G + SP +G KG P L G+ SP +KG P ++G
Sbjct: 253 LPGNKGDMGMKGDTGPMGSPGAQGG------KGDAGKPGLPGLAGSPGVKGDQGKPGVQG 306
Query: 165 VP 166
VP
Sbjct: 307 VP 308
>sp|O13166|TLE2_DANRE Protein groucho-2 OS=Danio rerio GN=gro2 PE=1 SV=1
Length = 761
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 101 GVLTSPPLKGVLASPPLKGVLASPPLKGVLTYPPLKGVLTYPPLKGVLTSPPL-KGVLTS 159
G T+P L+ +L PP++ LA+P L+ LT P ++++ + G LT+P + G+ S
Sbjct: 336 GTSTTPGLRPILGKPPME-ALAAPALRTPLTCPTPFAMMSHHEMNGSLTNPGVYAGLHIS 394
Query: 160 PPL 162
P +
Sbjct: 395 PQM 397
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,726,358
Number of Sequences: 539616
Number of extensions: 2788482
Number of successful extensions: 8803
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 199
Number of HSP's that attempted gapping in prelim test: 6507
Number of HSP's gapped (non-prelim): 1158
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)