Query psy13770
Match_columns 168
No_of_seqs 2 out of 4
Neff 1.4
Searched_HMMs 29240
Date Fri Aug 16 20:05:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a40_C Wiskott-aldrich syndrom 7.8 59 0.002 19.4 -0.7 13 1-13 9-21 (32)
2 2a3z_C WAsp, wiskott-aldrich s 4.9 1.4E+02 0.005 16.8 -0.1 13 1-13 6-18 (29)
3 2bsc_A F17A-G adhesin; bacteri 2.9 5.3E+02 0.018 20.6 1.4 15 121-136 130-144 (177)
4 1c1y_B Proto-onkogene serine/t 2.7 4.3E+02 0.015 18.2 0.7 24 4-27 18-41 (77)
5 1rrb_A RAF-1 RBD, RAF proto-on 2.3 5E+02 0.017 19.1 0.6 24 4-27 35-58 (107)
6 1wxm_A A-RAF proto-oncogene se 2.3 5.6E+02 0.019 18.1 0.9 24 4-27 24-47 (86)
7 2l05_A Serine/threonine-protei 2.3 5.2E+02 0.018 18.6 0.6 24 4-27 34-57 (95)
8 3ny5_A Serine/threonine-protei 2.2 5.6E+02 0.019 18.4 0.7 29 4-32 30-58 (96)
9 3m1f_V VOPL, putative uncharac 1.8 3.6E+02 0.012 16.3 -0.6 12 1-12 10-21 (31)
10 2vcp_D N-WAsp, neural wiskott- 1.8 4.6E+02 0.016 17.8 -0.3 13 2-14 48-60 (93)
No 1
>2a40_C Wiskott-aldrich syndrome protein family member 2; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus}
Probab=7.84 E-value=59 Score=19.43 Aligned_cols=13 Identities=38% Similarity=0.644 Sum_probs=9.7
Q ss_pred Cccccccccccch
Q psy13770 1 MRALRSGAQLKDS 13 (168)
Q Consensus 1 mralRs~~~LK~~ 13 (168)
|.++|.|.+||--
T Consensus 9 L~~Ir~G~~Lk~V 21 (32)
T 2a40_C 9 LSAIRQGFQLRRV 21 (32)
T ss_dssp HHHHHHCCCCBCC
T ss_pred HHHHHccCCcCCc
Confidence 4578999988854
No 2
>2a3z_C WAsp, wiskott-aldrich syndrome protein; WH2, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 2.08A {Bos taurus}
Probab=4.95 E-value=1.4e+02 Score=16.78 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=9.1
Q ss_pred Cccccccccccch
Q psy13770 1 MRALRSGAQLKDS 13 (168)
Q Consensus 1 mralRs~~~LK~~ 13 (168)
|.++|.|.+||..
T Consensus 6 l~~Ir~G~~Lk~v 18 (29)
T 2a3z_C 6 LDQIRQGIQLNKT 18 (29)
T ss_pred HHHHhcCCCCCCC
Confidence 3467888888754
No 3
>2bsc_A F17A-G adhesin; bacterial adhesion, lectin, protein-sugar complex, fimbriae; HET: NAG; 1.4A {Escherichia coli} SCOP: b.2.3.5 PDB: 1o9v_A* 1zpl_A* 1o9w_A* 3f64_A* 3f6j_A* 1o9z_A 2bsb_A* 1zk5_A* 1oio_A* 3ffo_A* 2bs8_A* 2bs7_1*
Probab=2.86 E-value=5.3e+02 Score=20.63 Aligned_cols=15 Identities=7% Similarity=-0.048 Sum_probs=4.8
Q ss_pred ecCCCceeeeecCCce
Q psy13770 121 LASPPLKGVLTYPPLK 136 (168)
Q Consensus 121 L~sP~~K~VL~~P~~K 136 (168)
|++|++ .-+.-||.|
T Consensus 130 Lk~ppa-~~~~vprt~ 144 (177)
T 2bsc_A 130 LKRNSS-ARYSVQKTS 144 (177)
T ss_dssp SSCC----CEEECCEE
T ss_pred EcCCCc-ceeccccce
Confidence 334443 334444433
No 4
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=2.68 E-value=4.3e+02 Score=18.23 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.1
Q ss_pred ccccccccchhhhhhhhhcccCce
Q psy13770 4 LRSGAQLKDSLRRTELKRDLTSPL 27 (168)
Q Consensus 4 lRs~~~LK~~L~r~E~K~~L~~PL 27 (168)
.|.|..++|.|.|+=-+|-|+--.
T Consensus 18 VrpG~tlrdaL~KaLk~R~L~pe~ 41 (77)
T 1c1y_B 18 VRNGMSLHDCLMKALKVRGLQPEC 41 (77)
T ss_dssp CCTTCBHHHHHHHHHHTTTCCGGG
T ss_pred ecCCcCHHHHHHHHHHHcCCCHHH
Confidence 588999999999998888885444
No 5
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=2.33 E-value=5e+02 Score=19.10 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.3
Q ss_pred ccccccccchhhhhhhhhcccCce
Q psy13770 4 LRSGAQLKDSLRRTELKRDLTSPL 27 (168)
Q Consensus 4 lRs~~~LK~~L~r~E~K~~L~~PL 27 (168)
.|+|..++|.|.|+=-+|-|+--.
T Consensus 35 VrpG~tlrdaL~KaLk~R~L~pe~ 58 (107)
T 1rrb_A 35 VRNGMSLHDCLMKALKVRGLQPEC 58 (107)
T ss_dssp CCTTCBHHHHHHHHHHHHTCCTTT
T ss_pred ecCCcCHHHHHHHHHHHcCCCHHH
Confidence 589999999999998888887444
No 6
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=2.30 E-value=5.6e+02 Score=18.06 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.2
Q ss_pred ccccccccchhhhhhhhhcccCce
Q psy13770 4 LRSGAQLKDSLRRTELKRDLTSPL 27 (168)
Q Consensus 4 lRs~~~LK~~L~r~E~K~~L~~PL 27 (168)
.|+|..++|.|.|+=-+|-|+--.
T Consensus 24 VrpG~tlrdaL~KaLk~R~L~pe~ 47 (86)
T 1wxm_A 24 VRDGMSVYDSLDKALKVRGLNQDC 47 (86)
T ss_dssp CCSSCBSHHHHHHHHHTTTCCSSS
T ss_pred ecCCcCHHHHHHHHHHHcCCCHHH
Confidence 589999999999998888886444
No 7
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=2.25 E-value=5.2e+02 Score=18.60 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.1
Q ss_pred ccccccccchhhhhhhhhcccCce
Q psy13770 4 LRSGAQLKDSLRRTELKRDLTSPL 27 (168)
Q Consensus 4 lRs~~~LK~~L~r~E~K~~L~~PL 27 (168)
.|.|..++|.|.|+=-+|-|+--.
T Consensus 34 VrpG~tlrdAL~KaLk~R~L~pe~ 57 (95)
T 2l05_A 34 ARCGVTVRDSLKKALMMRGLIPEC 57 (95)
T ss_dssp CCTTCBHHHHHHHHHHHHTCCGGG
T ss_pred ecCCcCHHHHHHHHHHHcCCCHHH
Confidence 588999999999998888886544
No 8
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=2.16 E-value=5.6e+02 Score=18.45 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=22.1
Q ss_pred ccccccccchhhhhhhhhcccCceEEEEe
Q psy13770 4 LRSGAQLKDSLRRTELKRDLTSPLKVVLT 32 (168)
Q Consensus 4 lRs~~~LK~~L~r~E~K~~L~~PLKVVL~ 32 (168)
.|.|..++|.|.|+=-+|.|+--.=.|..
T Consensus 30 VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~ 58 (96)
T 3ny5_A 30 ARCGVTVRDSLKKALMMRGLIPECCAVYR 58 (96)
T ss_dssp CCTTCBHHHHHHHHHHTTTCCGGGEEEEE
T ss_pred ecCCcCHHHHHHHHHHHcCCChHHeEEEE
Confidence 58899999999999888888654444433
No 9
>3m1f_V VOPL, putative uncharacterized protein VPA1370; actin, actin-binding protein, crosslinking, nucleator, prote protein interaction; HET: HIC ATP; 2.89A {Oryctolagus cuniculus}
Probab=1.85 E-value=3.6e+02 Score=16.35 Aligned_cols=12 Identities=42% Similarity=0.780 Sum_probs=7.1
Q ss_pred Cccccccccccc
Q psy13770 1 MRALRSGAQLKD 12 (168)
Q Consensus 1 mralRs~~~LK~ 12 (168)
|..+|.|+.|+.
T Consensus 10 MEqIRqGVkLr~ 21 (31)
T 3m1f_V 10 MEQIRQGVKLKS 21 (31)
T ss_dssp HHHHHHCCCCBC
T ss_pred HHHHHhhhcccc
Confidence 455666666653
No 10
>2vcp_D N-WAsp, neural wiskott-aldrich syndrome protein; actin-binding, transcription, muscle protein, nucleotide-binding, transcription regulation; HET: HIC ATP; 3.2A {Homo sapiens}
Probab=1.76 E-value=4.6e+02 Score=17.75 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=8.1
Q ss_pred ccccccccccchh
Q psy13770 2 RALRSGAQLKDSL 14 (168)
Q Consensus 2 ralRs~~~LK~~L 14 (168)
.++|.|.+||..-
T Consensus 48 ~~IR~G~~LKkv~ 60 (93)
T 2vcp_D 48 DQIRQGIQLKSVA 60 (93)
T ss_pred HHHHcccccCCCc
Confidence 4567777766543
Done!