Query psy13770
Match_columns 168
No_of_seqs 2 out of 4
Neff 1.4
Searched_HMMs 13730
Date Fri Aug 16 20:05:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13770.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13770hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vlba3 d.41.1.1 (A:194-310) A 3.6 1.9E+02 0.014 18.3 1.3 36 102-137 19-54 (117)
2 d1jrob1 d.41.1.1 (B:2-123) Xan 2.5 2.6E+02 0.019 17.8 1.1 34 103-136 37-70 (122)
3 d1eb7a2 a.3.1.5 (A:165-323) Di 2.3 3E+02 0.022 18.0 1.2 15 147-161 80-94 (159)
4 d1q8ka2 d.58.51.1 (A:186-302) 2.1 5.8E+02 0.042 16.5 2.5 36 10-45 22-58 (117)
5 d1iqca2 a.3.1.5 (A:151-308) Di 1.9 3.9E+02 0.029 17.4 1.3 13 148-160 78-90 (158)
6 d1nmla2 a.3.1.5 (A:167-326) Di 1.7 4.3E+02 0.031 17.2 1.2 16 137-152 77-92 (160)
7 d1uufa1 b.35.1.2 (A:3-144,A:31 1.7 3.8E+02 0.028 17.3 0.9 18 1-19 1-18 (179)
8 d2h3ja1 b.34.1.2 (A:1-75) Hypo 1.7 2.3E+02 0.016 16.6 -0.3 15 13-27 60-74 (75)
9 d1n62b1 d.41.1.1 (B:6-146) Car 1.6 3.9E+02 0.028 17.2 0.8 32 102-133 49-80 (141)
10 d3ebya1 d.17.4.4 (A:6-162) Put 1.6 3.6E+02 0.026 15.9 0.6 17 73-89 141-157 (157)
No 1
>d1vlba3 d.41.1.1 (A:194-310) Aldehyde oxidoreductase, domain 3 {Desulfovibrio gigas [TaxId: 879]}
Probab=3.59 E-value=1.9e+02 Score=18.33 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=18.1
Q ss_pred eecCCCceeeecCCCcceeecCCCceeeeecCCcee
Q psy13770 102 VLTSPPLKGVLASPPLKGVLASPPLKGVLTYPPLKG 137 (168)
Q Consensus 102 VL~sP~~K~VL~sP~~K~VL~sP~~K~VL~~P~~K~ 137 (168)
++.||-+.+.+++=...-.++.|-.-.|+|+-.+.+
T Consensus 19 ~vrS~~a~a~I~~iD~~~A~~~pGV~~V~T~~Di~~ 54 (117)
T d1vlba3 19 MVQAKVSHANIKGIDTSEALTMPGVHSVITHKDVKG 54 (117)
T ss_dssp EEECSSSSEEEEEEECHHHHTSTTEEEEECGGGCCS
T ss_pred EEeCCccceEEEEeeecccccCccceEEeEhhhccc
Confidence 444555555554444444455555555555554443
No 2
>d1jrob1 d.41.1.1 (B:2-123) Xanthine dehydrogenase chain B, N-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
Probab=2.54 E-value=2.6e+02 Score=17.79 Aligned_cols=34 Identities=24% Similarity=0.181 Sum_probs=14.6
Q ss_pred ecCCCceeeecCCCcceeecCCCceeeeecCCce
Q psy13770 103 LTSPPLKGVLASPPLKGVLASPPLKGVLTYPPLK 136 (168)
Q Consensus 103 L~sP~~K~VL~sP~~K~VL~sP~~K~VL~~P~~K 136 (168)
+.||.+.+-+++-.....++.|....|+|+..+.
T Consensus 37 vrS~~a~a~I~~iD~~~A~~~pGV~~v~t~~d~p 70 (122)
T d1jrob1 37 GLSTEASAAITGLDLEPVRESPGVIAVFTAADLP 70 (122)
T ss_dssp EECSCSSEEEEEEECHHHHTSTTEEEEECGGGCS
T ss_pred EECCccCccceeeehhhhhcCCCcEEEEEccCCc
Confidence 3444444444433333334444444455544443
No 3
>d1eb7a2 a.3.1.5 (A:165-323) Di-heme cytochrome c peroxidase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.29 E-value=3e+02 Score=18.03 Aligned_cols=15 Identities=33% Similarity=0.702 Sum_probs=6.2
Q ss_pred cccCCCccccccCCC
Q psy13770 147 VLTSPPLKGVLTSPP 161 (168)
Q Consensus 147 vltspplkgvltspp 161 (168)
.+.+|+|.||-.+.|
T Consensus 80 ~frtPsLrnv~~taP 94 (159)
T d1eb7a2 80 VFRAAPLRNVALTAP 94 (159)
T ss_dssp EEECCCCTTGGGSCS
T ss_pred cccccceecccccCc
Confidence 334444444444333
No 4
>d1q8ka2 d.58.51.1 (A:186-302) eIF-2-alpha, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.07 E-value=5.8e+02 Score=16.48 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=21.7
Q ss_pred ccchhhhhhhhhcccCceEEEEec-CceeeEeeCCcc
Q psy13770 10 LKDSLRRTELKRDLTSPLKVVLTS-PPLKVVLTSPPL 45 (168)
Q Consensus 10 LK~~L~r~E~K~~L~~PLKVVL~s-P~~KVVL~sP~~ 45 (168)
+|+.|..+|....=.++++|-+-+ |.-.+.+++|--
T Consensus 22 IK~AL~aa~~~s~e~~~I~I~~igaP~Y~i~v~a~D~ 58 (117)
T d1q8ka2 22 VKEALRAGLNCSTENMPIKINLIAPPRYVMTTTTLER 58 (117)
T ss_dssp HHHHHHHHHHSSBTTBCEEEEEEETTEEEEEEECSSH
T ss_pred HHHHHHHHHhcCCCCCcEEEEEECCCeEEEEEecCCH
Confidence 466777777655556678776554 444555566543
No 5
>d1iqca2 a.3.1.5 (A:151-308) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]}
Probab=1.90 E-value=3.9e+02 Score=17.41 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=5.3
Q ss_pred ccCCCccccccCC
Q psy13770 148 LTSPPLKGVLTSP 160 (168)
Q Consensus 148 ltspplkgvltsp 160 (168)
+.+|+|.||-.+.
T Consensus 78 frTPsLrnv~~ta 90 (158)
T d1iqca2 78 FKVPTLRNIELTY 90 (158)
T ss_dssp EECCCCTTGGGSC
T ss_pred ccccccccccccc
Confidence 3344444443333
No 6
>d1nmla2 a.3.1.5 (A:167-326) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}
Probab=1.71 E-value=4.3e+02 Score=17.25 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=7.4
Q ss_pred eeeecCCccccccCCC
Q psy13770 137 GVLTYPPLKGVLTSPP 152 (168)
Q Consensus 137 ~VL~ypplkgvltspp 152 (168)
+.++-|+|+||-.+.|
T Consensus 77 ~~frtPsLrnv~~TaP 92 (160)
T d1nmla2 77 YVFRASPLRNIELTAP 92 (160)
T ss_dssp EEEECCCCTTGGGCCS
T ss_pred cccccccccCccccCc
Confidence 3344445555444444
No 7
>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}
Probab=1.69 E-value=3.8e+02 Score=17.27 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=11.1
Q ss_pred Cccccccccccchhhhhhh
Q psy13770 1 MRALRSGAQLKDSLRRTEL 19 (168)
Q Consensus 1 mralRs~~~LK~~L~r~E~ 19 (168)
|||.++-.+ +++|+-.|.
T Consensus 1 m~a~~~~~~-~~pl~i~ev 18 (179)
T d1uufa1 1 IKAVGAYSA-KQPLEPMDI 18 (179)
T ss_dssp CEEEEBSST-TSCCEEEEC
T ss_pred CeEEEEccC-CCCCEEEEe
Confidence 677776665 556655543
No 8
>d2h3ja1 b.34.1.2 (A:1-75) Hypothetical protein PA4359 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=1.69 E-value=2.3e+02 Score=16.62 Aligned_cols=15 Identities=40% Similarity=0.505 Sum_probs=10.4
Q ss_pred hhhhhhhhhcccCce
Q psy13770 13 SLRRTELKRDLTSPL 27 (168)
Q Consensus 13 ~L~r~E~K~~L~~PL 27 (168)
.|++.|++.|.-.|+
T Consensus 60 aLr~~~A~~I~Vepl 74 (75)
T d2h3ja1 60 ALRRKDLALLTLVPL 74 (75)
T ss_dssp CCCHHHHTTEEEEEC
T ss_pred EeCHHHhCccEEEEC
Confidence 577888887765554
No 9
>d1n62b1 d.41.1.1 (B:6-146) Carbon monoxide (CO) dehydrogenase molybdoprotein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=1.62 E-value=3.9e+02 Score=17.17 Aligned_cols=32 Identities=22% Similarity=0.121 Sum_probs=14.8
Q ss_pred eecCCCceeeecCCCcceeecCCCceeeeecC
Q psy13770 102 VLTSPPLKGVLASPPLKGVLASPPLKGVLTYP 133 (168)
Q Consensus 102 VL~sP~~K~VL~sP~~K~VL~sP~~K~VL~~P 133 (168)
++.||-+.+-+.+=.....++.|-...|+|+-
T Consensus 49 ~vrSp~a~a~I~~iD~s~A~~~pGV~~V~t~~ 80 (141)
T d1n62b1 49 FVRSSHAHARIKSIDTSKAKALPGVFAVLTAA 80 (141)
T ss_dssp EEECSCSSEEEEEEECHHHHHSTTEEEEEEHH
T ss_pred EEEccccCceeeeeehHHHHhcCCCcEEEEec
Confidence 34444444444444444444445444455443
No 10
>d3ebya1 d.17.4.4 (A:6-162) Putative hydroxylase subunit Saro3860 {Novosphingobium aromaticivorans [TaxId: 48935]}
Probab=1.61 E-value=3.6e+02 Score=15.88 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=0.0
Q ss_pred eeEeeCCCeeeEEeeee
Q psy13770 73 KVVLTSPPLKGVLTYPL 89 (168)
Q Consensus 73 KVVL~sP~~K~VL~~PL 89 (168)
.|++.+-++-..|.|||
T Consensus 141 ~v~~D~~~~~~~~~~p~ 157 (157)
T d3ebya1 141 TCIYDTLRIATLLATPI 157 (157)
T ss_dssp EEEECCSCCCCSSCCCC
T ss_pred EEEEeCcccCcceeccC
Done!