RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13770
         (168 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.3 bits (78), Expect = 0.017
 Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 1   MRALR--SGAQLKDSLRRTELKRDLTSPLKVVLTSPPLKVVLTSPP--LKGVLASPPLKG 56
           M ++   +  Q++D + +T         +++ L +    +V++ PP  L G+  +  L+ 
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT--LRK 395

Query: 57  VLASPPL 63
             A   L
Sbjct: 396 AKAPSGL 402



 Score = 26.2 bits (57), Expect = 7.4
 Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 36/121 (29%)

Query: 7    GAQLK----DSLRRTELKRDL-------------TSPLKVVLTSPPLKVVLTSPPLKG-- 47
            G+Q +    D  + ++  +D+              S L +V+ +P    +      KG  
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE-KGKR 1683

Query: 48   -------VLASPPLKGVLASPPLKGVLTSPPLKVVLTSPPLKGVL-----TYPLLKGVLT 95
                   ++    + G L +  +   +          S   KG+L     T P L   L 
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE--KGLLSATQFTQPAL--TLM 1739

Query: 96   S 96
             
Sbjct: 1740 E 1740



 Score = 26.2 bits (57), Expect = 7.8
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 25/85 (29%)

Query: 8   AQLKDSLRRTELKRDLTSPLKVVLTSPPLKVV-LTSPPLKGVLAS-----PPLKGVLASP 61
           + L+DSL   E       P      SP L +  LT   ++  +       P  K V  S 
Sbjct: 322 SILEDSLENNE-----GVP------SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS- 369

Query: 62  PLKGVLTSPPLKVVLTSPP--LKGV 84
                L +    +V++ PP  L G+
Sbjct: 370 -----LVNGAKNLVVSGPPQSLYGL 389


>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle,
           iron-sulfur, mitochondrion, transit peptide, 4Fe-4S,
           3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1
           c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A*
           5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A*
           1nis_A* 1nit_A
          Length = 753

 Score = 26.8 bits (60), Expect = 3.8
 Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 3/41 (7%)

Query: 121 LASPPLKGVLTYPPLKGVLTYPPLKGVLTSPPLKGVLTSPP 161
           + SP +  V     + G L + P    LT    K      P
Sbjct: 462 VTSPEI--VTALA-IAGTLKFNPETDFLTGKDGKKFKLEAP 499


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.313    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,370,947
Number of extensions: 133419
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 9
Length of query: 168
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 81
Effective length of database: 4,272,666
Effective search space: 346085946
Effective search space used: 346085946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.0 bits)