BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13773
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 71/74 (95%)
Query: 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 61
+ YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMW
Sbjct: 492 LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551
Query: 62 FGESEANVRDIFDK 75
FGESEANVR+IFDK
Sbjct: 552 FGESEANVREIFDK 565
Score = 147 bits (370), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 86/116 (74%), Positives = 97/116 (83%), Gaps = 6/116 (5%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
+ +DVDL ++AK+TNGFSGADLTEICQRACKLAIR+SIE+E R + NP+A ME
Sbjct: 666 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESE-IRRERERQTNPSA---ME 721
Query: 181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPS 236
E EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQQSRGFG+ FRFPS
Sbjct: 722 VE-EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPS 775
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 45/48 (93%)
Query: 76 VTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQ 123
VTM++FR+A+ +S+PSALRET+VEVP +TWEDIGGLE VKRELQELVQ
Sbjct: 447 VTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQ 494
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 50/70 (71%)
Query: 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
P+ HP F G++P RG+L YGPPG GKTL+A+A+ANE A F + GPE+++ GES
Sbjct: 223 PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES 282
Query: 66 EANVRDIFDK 75
E+N+R F++
Sbjct: 283 ESNLRKAFEE 292
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 71/74 (95%)
Query: 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 61
+ YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMW
Sbjct: 492 LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551
Query: 62 FGESEANVRDIFDK 75
FGESEANVR+IFDK
Sbjct: 552 FGESEANVREIFDK 565
Score = 147 bits (370), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 86/116 (74%), Positives = 97/116 (83%), Gaps = 6/116 (5%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
+ +DVDL ++AK+TNGFSGADLTEICQRACKLAIR+SIE+E R + NP+A ME
Sbjct: 666 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESE-IRRERERQTNPSA---ME 721
Query: 181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPS 236
E EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQQSRGFG+ FRFPS
Sbjct: 722 VE-EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPS 775
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 45/48 (93%)
Query: 76 VTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQ 123
VTM++FR+A+ +S+PSALRET+VEVP +TWEDIGGLE VKRELQELVQ
Sbjct: 447 VTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQ 494
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 50/70 (71%)
Query: 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
P+ HP F G++P RG+L YGPPG GKTL+A+A+ANE A F + GPE+++ GES
Sbjct: 223 PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES 282
Query: 66 EANVRDIFDK 75
E+N+R F++
Sbjct: 283 ESNLRKAFEE 292
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 151 bits (381), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 71/74 (95%)
Query: 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 61
+ YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMW
Sbjct: 30 LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89
Query: 62 FGESEANVRDIFDK 75
FGESEANVR+IFDK
Sbjct: 90 FGESEANVREIFDK 103
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/103 (66%), Positives = 78/103 (75%), Gaps = 5/103 (4%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
+ +DVDL ++AK+TNGFSGADLTEICQRACKLA + R + NP +AME
Sbjct: 204 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLA-IRESIESEIRRERERQTNP---SAME 259
Query: 181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQ 223
E EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQ
Sbjct: 260 VE-EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/32 (87%), Positives = 30/32 (93%)
Query: 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQ 123
ALRET+VEVP +TWEDIGGLE VKRELQELVQ
Sbjct: 1 ALRETVVEVPQVTWEDIGGLEDVKRELQELVQ 32
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 52/75 (69%)
Query: 1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 60
M PV +P++F G+ GVL GPPGCGKTLLAKA+ANE NFISVKGPELL M
Sbjct: 24 MAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83
Query: 61 WFGESEANVRDIFDK 75
+ GESE VR +F +
Sbjct: 84 YVGESERAVRQVFQR 98
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 100 VPNITWEDIGGLEGVKREL 118
VPN+TW DIG LE ++ EL
Sbjct: 4 VPNVTWADIGALEDIREEL 22
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 21/90 (23%)
Query: 124 DVDLNYIA--KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMET 181
DV+L IA + ++GADL+ + + A A+RQ E+ R++ +GN
Sbjct: 202 DVNLEAIAGDLRCDCYTGADLSALVREASICALRQ----EMARQK---SGNEKGEL---- 250
Query: 182 EDEDDPVPEITRAHFEEAMRFARRSVNDAD 211
+++ HFEEA + R S++ D
Sbjct: 251 --------KVSHKHFEEAFKKVRSSISKKD 272
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 74/129 (57%), Gaps = 15/129 (11%)
Query: 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 61
+ P++HPE F K G++P +G+L YGPPG GKTLLAKA+A E A FI V G EL+ +
Sbjct: 32 VVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF 91
Query: 62 FGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEG----VKRE 117
GE + V+DIF K+ E +PS + I E+ I + L G V+R
Sbjct: 92 IGEGASLVKDIF-KLAKEK--------APSII--FIDEIDAIAAKRTDALTGGDREVQRT 140
Query: 118 LQELVQDVD 126
L +L+ ++D
Sbjct: 141 LMQLLAEMD 149
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 99 EVPNITWEDIGGLEGVKRELQELVQ 123
E PN+ +EDIGGLE +E++E+V+
Sbjct: 10 ERPNVRYEDIGGLEKQMQEIREVVE 34
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 50/71 (70%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
P+ HP F G++P RG+L YGPPG GKTL+A+A+ANE A F + GPE+++ GE
Sbjct: 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281
Query: 65 SEANVRDIFDK 75
SE+N+R F++
Sbjct: 282 SESNLRKAFEE 292
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 33/35 (94%)
Query: 76 VTMENFRYAMGKSSPSALRETIVEVPNITWEDIGG 110
VTM++FR+A+ +S+PSALRET+VEVP +TWEDIGG
Sbjct: 447 VTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 50/71 (70%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
P+ HP F G++P RG+L YGPPG GKTL+A+A+ANE A F + GPE+++ GE
Sbjct: 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281
Query: 65 SEANVRDIFDK 75
SE+N+R F++
Sbjct: 282 SESNLRKAFEE 292
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 33/35 (94%)
Query: 76 VTMENFRYAMGKSSPSALRETIVEVPNITWEDIGG 110
VTM++FR+A+ +S+PSALRET+VEVP +TWEDIGG
Sbjct: 447 VTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 50/71 (70%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
P+ HP F G++P RG+L YGPPG GKTL+A+A+ANE A F + GPE+++ GE
Sbjct: 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281
Query: 65 SEANVRDIFDK 75
SE+N+R F++
Sbjct: 282 SESNLRKAFEE 292
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 50/71 (70%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
P+ HP F G++P RG+L YGPPG GKTL+A+A+ANE A F + GPE+++ GE
Sbjct: 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281
Query: 65 SEANVRDIFDK 75
SE+N+R F++
Sbjct: 282 SESNLRKAFEE 292
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 33/35 (94%)
Query: 76 VTMENFRYAMGKSSPSALRETIVEVPNITWEDIGG 110
VTM++FR+A+ +S+PSALRET+VEVP +TWEDIGG
Sbjct: 447 VTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 57/207 (27%)
Query: 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
P+ HPE + + G++P +GV+ YG PG GKTLLAKA+AN+ A F+ + G EL+ + G+
Sbjct: 201 PLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDG 260
Query: 66 EANVRDIFDKVTMENF---------------RYAMGKSSPSALRETIVEVPNIT--WEDI 108
R IF KV EN RY ++ T++E+ N ++D
Sbjct: 261 PRLCRQIF-KVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319
Query: 109 GGLE---------------------------------------GVKRELQELVQDVDLNY 129
G ++ G+ L +DV+L
Sbjct: 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLET 379
Query: 130 IAKVTNGFSGADLTEICQRACKLAIRQ 156
+ + SGAD+ +C A LA+R+
Sbjct: 380 LVTTKDDLSGADIQAMCTEAGLLALRE 406
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
P+ + + + G+ P RGVL YGPPG GKT+L KA+AN +A FI V G E + + GE
Sbjct: 191 PLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEG 250
Query: 66 EANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELV 122
VRD+F ++ EN +PS + I EV +I + G RE+Q ++
Sbjct: 251 PRMVRDVF-RLAREN--------APSII--FIDEVDSIATKRFDAQTGSDREVQRIL 296
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 99 EVPNITWEDIGGLEGVKRELQELVQ 123
E P++T+ D+GGL+ K+E++E V+
Sbjct: 165 EKPDVTYADVGGLDMQKQEIREAVE 189
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 61
+ P+ PE+F G+ P +G+L YGPPG GKTL A+A+AN A FI V G EL+ +
Sbjct: 224 VVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKY 283
Query: 62 FGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWED-IGGLEGVKRELQE 120
GE VR++F+ A K + + I V ++D GG V+R + E
Sbjct: 284 VGEGARMVRELFE--------MARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLE 335
Query: 121 LVQDVD 126
L+ +D
Sbjct: 336 LITQLD 341
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQ 123
PS T+ E P++T+ D+GG + +L+E+V+
Sbjct: 193 PSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVE 226
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 44/68 (64%)
Query: 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
PV+HPE F G+ +GV+ YGPPG GKTLLA+A+A+ FI V G EL+ + GE
Sbjct: 167 PVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEG 226
Query: 66 EANVRDIF 73
VR++F
Sbjct: 227 SRMVRELF 234
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQ 156
L + ++L +A+ NG SGAD+ +C A A+R+
Sbjct: 337 LTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%)
Query: 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
P+++PE F + G++P +GVL YGPPG GKTLLAKA+A ANFI ++ + GES
Sbjct: 200 PLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGES 259
Query: 66 EANVRDIF 73
+R++F
Sbjct: 260 ARIIREMF 267
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 69 VRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQ 123
VR D T+ R ++ P T E IT++ IGGL REL+E+++
Sbjct: 144 VRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIE 198
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%)
Query: 4 TYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 63
P++ +KF G++ +G L YGPPG GKTLLA+A A + A F+ + P+L+ M+ G
Sbjct: 198 VLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIG 257
Query: 64 ESEANVRDIF 73
E VRD F
Sbjct: 258 EGAKLVRDAF 267
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
PV+ P F K +P+ G+L YGPPG GK+ LAKA+A E + F SV +L++ W GES
Sbjct: 70 PVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 128
Query: 66 EANVRDIF 73
E V+ +F
Sbjct: 129 EKLVKQLF 136
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 92 ALRETIV-EVPNITWEDIGGLEGVKRELQELV 122
AL I+ E PN+ WED+ GLEG K L+E V
Sbjct: 36 ALSSAILSEKPNVKWEDVAGLEGAKEALKEAV 67
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
++ PE+FL+ G + +G L GPPGCGKTLLAKA+A E Q F+++ G E + + G
Sbjct: 25 LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGA 84
Query: 67 ANVRDIF 73
A VR +F
Sbjct: 85 ARVRSLF 91
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 130 IAKVTNGFSGADLTEICQRACKLAIRQ 156
+A++T GFSGAD+ IC A A R+
Sbjct: 206 LAELTPGFSGADIANICNEAALHAARE 232
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
PV+ P F K +P+ G+L YGPPG GK+ LAKA+A E + F SV +L++ W GES
Sbjct: 55 PVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 113
Query: 66 EANVRDIF 73
E V+ +F
Sbjct: 114 EKLVKQLF 121
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 92 ALRETIV-EVPNITWEDIGGLEGVKRELQELV 122
AL I+ E PN+ WED+ GLEG K L+E V
Sbjct: 21 ALSSAILSEKPNVKWEDVAGLEGAKEALKEAV 52
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
PV+ P F K +P+ G+L YGPPG GK+ LAKA+A E + F SV +L++ W GES
Sbjct: 46 PVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 104
Query: 66 EANVRDIF 73
E V+ +F
Sbjct: 105 EKLVKQLF 112
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 94 RETIVEVPNITWEDIGGLEGVKRELQELV 122
R ++ E PN+ WED+ GLEG K L+E V
Sbjct: 15 RGSLSEKPNVKWEDVAGLEGAKEALKEAV 43
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
PV+ P F K +P+ G+L YGPPG GK+ LAKA+A E + F SV +L++ W GES
Sbjct: 37 PVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 95
Query: 66 EANVRDIF 73
E V+ +F
Sbjct: 96 EKLVKQLF 103
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 97 IVEVPNITWEDIGGLEGVKRELQELV 122
+ E PN+ WED+ GLEG K L+E V
Sbjct: 9 LSEKPNVKWEDVAGLEGAKEALKEAV 34
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
+++PE++ G + +GVL GPPG GKTLLAKA+A E F S+ G + M+ G
Sbjct: 30 LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGA 89
Query: 67 ANVRDIFD 74
+ VRD+F+
Sbjct: 90 SRVRDLFE 97
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 94 RETIVEVPNITWEDIGGLEGVKRELQ--ELVQDVDLNYIAKVTNGFSGADLTEICQRACK 151
R+ +V+ P+ G +E +K ++ +L DV+L +AK+T G +GADL I A
Sbjct: 176 RQVLVDKPDFN----GRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAAL 231
Query: 152 LAIRQSIETEIRREREK 168
LA R + + E+R++ K
Sbjct: 232 LAGRNN-QKEVRQQHLK 247
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
+ P +F K G + +GVL GPPG GKTLLAKAIA E + F ++ G + + M+ G
Sbjct: 31 LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGA 90
Query: 67 ANVRDIFDK 75
+ VRD+F++
Sbjct: 91 SRVRDMFEQ 99
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 94 RETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLA 153
R+ +V +P++ + + V L D+D IA+ T GFSGADL + A A
Sbjct: 175 RQVVVGLPDVRGRE--QILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFA 232
Query: 154 IR 155
R
Sbjct: 233 AR 234
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
+++P +F + G + +GVL GPPG GKT LA+A+A E + FI+ G + + M+ G
Sbjct: 59 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 118
Query: 67 ANVRDIFD 74
A VRD+F+
Sbjct: 119 ARVRDLFE 126
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 103 ITWEDIGGLEGVKR---ELQELVQDVDLNYIAKVTNGFSGAD 141
I D+ G E + R + L +DVDL +AK T GF GAD
Sbjct: 207 IDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
+++P +F + G + +GVL GPPG GKT LA+A+A E + FI+ G + + M+ G
Sbjct: 50 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 109
Query: 67 ANVRDIFD 74
A VRD+F+
Sbjct: 110 ARVRDLFE 117
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 121 LVQDVDLNYIAKVTNGFSGAD 141
L +DVDL +AK T GF GAD
Sbjct: 219 LAEDVDLALLAKRTPGFVGAD 239
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
+++P +F + G + +GVL GPPG GKT LA+A+A E + FI+ G + + M+ G
Sbjct: 59 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 118
Query: 67 ANVRDIFD 74
A VRD+F+
Sbjct: 119 ARVRDLFE 126
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 121 LVQDVDLNYIAKVTNGFSGAD 141
L +DVDL +AK T GF GAD
Sbjct: 228 LAEDVDLALLAKRTPGFVGAD 248
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
+++P +F + G + +GVL GPPG GKT LA+A+A E + FI+ G + + M+ G
Sbjct: 35 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 94
Query: 67 ANVRDIFD 74
A VRD+F+
Sbjct: 95 ARVRDLFE 102
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 103 ITWEDIGGLEGVKR---ELQELVQDVDLNYIAKVTNGFSGAD 141
I D+ G E + R + L +DVDL +AK T GF GAD
Sbjct: 183 IDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 224
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 6 PVEHPEKFLKFGMQ-PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
P PE F G++ P++G+L +GPPG GKTLLA+A+A EC A F+++ L + + G+
Sbjct: 40 PSVRPELFT--GLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGD 97
Query: 65 SEANVRDIF 73
E VR +F
Sbjct: 98 GEKLVRALF 106
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 18/94 (19%)
Query: 127 LNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD 186
L +AK+T+G+SG+DLT + + A IR E+ E+ K A A
Sbjct: 214 LRRLAKITDGYSGSDLTALAKDAALEPIR-----ELNVEQVKCLDISAMRA--------- 259
Query: 187 PVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQ 220
IT F +++ RRSV + YE ++Q
Sbjct: 260 ----ITEQDFHSSLKRIRRSVAPQSLNSYEKWSQ 289
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
++ P KF + G + +G+L GPPG GKTLLA+A+A E F + G + + ++ G
Sbjct: 35 LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGA 94
Query: 67 ANVRDIF 73
A VRD+F
Sbjct: 95 ARVRDLF 101
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQ 156
L +DV+L IAK T GF GADL + A LA R+
Sbjct: 204 LAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 2 ISTYPVEHPEKFLKFGMQ-PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 60
I +P+ P+ F G++ P +G+L +GPPG GKTL+ K IA++ A F S+ L +
Sbjct: 99 IVVWPMLRPDIFT--GLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156
Query: 61 WFGESEANVRDIF 73
W GE E VR +F
Sbjct: 157 WVGEGEKMVRALF 169
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 18/104 (17%)
Query: 119 QELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAA 178
Q + + ++ I + ++ FSGAD+T++C+ A IR S++T A A
Sbjct: 268 QCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR-SLQT--------------ADIA 312
Query: 179 METEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTL 222
T D+ P+ I FE A R R SV+ D+ YE + +T
Sbjct: 313 TITPDQVRPIAYI---DFENAFRTVRPSVSPKDLELYENWNKTF 353
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 101 PNITWEDIGGLEGVKRELQELV 122
P + WEDI G+E K ++E+V
Sbjct: 79 PPVNWEDIAGVEFAKATIKEIV 100
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 2 ISTYPVEHPEKFLKFGMQ-PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 60
I P PE F G++ P+RG+L +GPPG GKT+LAKA+A E A F ++ L +
Sbjct: 130 IVILPSLRPELFT--GLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187
Query: 61 WFGESEANVRDIF 73
+ GE E VR +F
Sbjct: 188 YVGEGEKLVRALF 200
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMWFGE 64
P++ P F P RG+L +GPPG GK+ LAKA+A E + F S+ +L++ W GE
Sbjct: 153 PIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGE 211
Query: 65 SEANVRDIF 73
SE V+++F
Sbjct: 212 SEKLVKNLF 220
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 97 IVEVPNITWEDIGGLEGVKRELQELV 122
++E PN+ W D+ GLEG K L+E V
Sbjct: 125 VIERPNVKWSDVAGLEGAKEALKEAV 150
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMWFG 63
P++ P F P RG+L +GPPG GK+ LAKA+A E + F S+ +L++ W G
Sbjct: 30 LPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG 88
Query: 64 ESEANVRDIF 73
ESE V+++F
Sbjct: 89 ESEKLVKNLF 98
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 97 IVEVPNITWEDIGGLEGVKRELQELV 122
++E PN+ W D+ GLEG K L+E V
Sbjct: 3 VIERPNVKWSDVAGLEGAKEALKEAV 28
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
++ P KF + G + +G+L GPPG G TLLA+A+A E F + G + + ++ G
Sbjct: 35 LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVGA 94
Query: 67 ANVRDIF 73
A VRD+F
Sbjct: 95 ARVRDLF 101
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQ 156
L +DV+L IAK T GF GADL + A LA R+
Sbjct: 204 LAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC--QANFISVKGPELLTMWFGESEANVR 70
+K R VL GPPG GKT LA AIA E + F + G E+ + ++E
Sbjct: 55 LIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE---- 110
Query: 71 DIFDKVTMENFRYAMG 86
V MENFR A+G
Sbjct: 111 -----VLMENFRRAIG 121
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC--QANFISVKGPELLTMWFGESEANVR 70
+K R VL GPPG GKT LA AIA E + F G E+ + ++E
Sbjct: 69 LIKSKKXAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTE---- 124
Query: 71 DIFDKVTMENFRYAMG 86
V ENFR A+G
Sbjct: 125 -----VLXENFRRAIG 135
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 58
VL GPPG GKT LA IA+E Q N GP L+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 58
VL GPPG GKT LA IA+E Q N GP L+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 58
VL GPPG GKT LA IA+E Q N GP L+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 58
VL GPPG GKT LA IA+E Q N GP L+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 58
VL GPPG GKT LA IA+E Q N GP L+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 55
+P +L +GPPG GKT LA IA+E N GP
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGP 72
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 55
+P +L +GPPG GKT LA IA+E N GP
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGP 72
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 55
+P +L +GPPG GKT LA IA+E N GP
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGP 72
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 58
VL GPPG G+T LA IA+E Q N GP L+
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLV 88
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVRDIFD 74
+ +L GP G GKT +A+ +A A FI V+ + + + E ++ +RD+ D
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 105
>pdb|3KZZ|A Chain A, Crystal Structure Of Snap-Tag Bound To Its Substrate
Benzylguanine
Length = 182
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Query: 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYE 216
LAGNPAA+AA++T +PVP + AH R D D+ YE
Sbjct: 123 LAGNPAATAAVKTALSGNPVPILIPAH--------RVVQGDLDVGGYE 162
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVRDIFD 74
+ +L GP G GKT +A+ +A A FI V+ + + + E ++ +RD+ D
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 105
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVRDIFD 74
+ +L GP G GKT +A+ +A A FI V+ + + + E ++ +RD+ D
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 104
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVRDIFD 74
+ +L GP G GKT +A+ +A A FI V+ + + + E ++ +RD+ D
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 111
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVRDIFD 74
+ +L GP G GKT +A+ +A A FI V+ + + + E ++ +RD+ D
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 105
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEA--NVRDIFD 74
P VL GPP GKT LA IA E FI + P+ + + F E+ ++ IFD
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFD 118
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEA--NVRDIFD 74
P VL GPP GKT LA IA E FI + P+ + + F E+ ++ IFD
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFD 117
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVRD 71
L+ + P + +L GP G GKT +A+ +A A FI V+ + + + E ++ +RD
Sbjct: 44 LRHEVTP-KNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD 102
Query: 72 IFD 74
+ D
Sbjct: 103 LTD 105
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168 In
Complex With Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168 In
Complex With Adenosine-5'-Diphosphate
Length = 338
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57
+LF GP G GKT LA I+ E AN + P +
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXI 91
>pdb|3KZY|A Chain A, Crystal Structure Of Snap-Tag
pdb|3KZY|B Chain B, Crystal Structure Of Snap-Tag
Length = 182
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYE 216
LAGNPAA+AA++T +PVP + H R D D+ YE
Sbjct: 123 LAGNPAATAAVKTALSGNPVPILIPCH--------RVVQGDLDVGGYE 162
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC 45
+ V+ + ++K G P +LF GPPG GKT A A+A E
Sbjct: 32 HIVKRLKHYVKTGSMPH--LLFAGPPGVGKTTAALALAREL 70
>pdb|3L00|A Chain A, Crystal Structure Of Benzylated Snap-Tag
Length = 182
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYE 216
LAGNPAA+AA++T +PVP + H R D D+ YE
Sbjct: 123 LAGNPAATAAVKTALSGNPVPILIPXH--------RVVQGDLDVGGYE 162
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 44
KF+ G P +LFYGPPG GKT A+A E
Sbjct: 39 KFVDEGKLPH--LLFYGPPGTGKTSTIVALARE 69
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEA 67
+ ++ G R VL G PG GKT +A +A + F ++ G E+ ++ ++EA
Sbjct: 61 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA 118
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 8 EHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIA 42
EH + +K R VL G PG GK++L +A+A
Sbjct: 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMA 81
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 28/177 (15%)
Query: 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRD 71
+ F QP+ + F GP G GK+ + + Q A I++ G +
Sbjct: 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI-------------- 66
Query: 72 IFDKVTMENFRYAMG-KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI 130
D +++EN+R +G S SA+ + N+T+ GLEG + ++L Q +DL +
Sbjct: 67 --DNISLENWRSQIGFVSQDSAIMAGTIR-ENLTY----GLEGDYTD-EDLWQVLDLAFA 118
Query: 131 AKVTNGFSGADLTEICQRACKLAIRQSIETEIRR---EREKLAGNPAASAAMETEDE 184
TE+ +R K++ Q I R K+ A+A++++E E
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE 175
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 26 FYGPPGCGKTLLAKAIANECQANFISV 52
GPPG GKT LAK+IA F+ +
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRI 139
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 32.0 bits (71), Expect = 0.42, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 121 LVQDVDL-NYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168
L ++VDL +Y+A+ + SGAD+ ICQ + LA+R++ + ++ EK
Sbjct: 19 LSEEVDLEDYVAR-PDKISGADINSICQESGMLAVRENRYIVLAKDFEK 66
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 80/209 (38%), Gaps = 50/209 (23%)
Query: 5 YPVEHPE----KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN--ECQANFISVKGPELL 58
YP E PE K L F ++P + + GP GCGK+ + + + I + G E+
Sbjct: 1086 YP-ERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIK 1144
Query: 59 TMWFGESEANVR------DIFDKVTMENFRYAMGKSSPS-ALRETIVEVPNITWEDIGGL 111
T+ + + + +FD EN Y + SS + A E + NI
Sbjct: 1145 TLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIH------- 1197
Query: 112 EGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAG 171
N+IA++ GF T + R +L+ Q I R L
Sbjct: 1198 ----------------NFIAELPEGFE----TRVGDRGTQLSGGQKQRIAIAR---ALVR 1234
Query: 172 NPA------ASAAMETEDEDDPVPEITRA 194
NP A++A++TE E + RA
Sbjct: 1235 NPKILLLDEATSALDTESEKVVQEALDRA 1263
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 22 RGVLFYGPPGCGKTLLAKAIANE 44
R + YGPPG GKT A +A E
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQE 100
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 8 EHPEKFLKFGMQPSR--GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 58
+H LK ++ + +LFYGPPG GKT A+ E + GP+L+
Sbjct: 43 DHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE-------LYGPDLM 88
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEA 67
++ G R VL G PG GKT +A A + F ++ G E+ ++ ++EA
Sbjct: 78 IREGKIAGRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEA 133
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQAN 48
++ +GPPG GKT LA+ IA A+
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANAD 77
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGESEANVRDIFDKVTMENFR 82
+L GP G GKTLLA+ +A F L + GE +V +I K+ ++
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE---DVENIIQKL-LQKCD 109
Query: 83 YAMGKSSPSALR-ETIVEV------PNITWEDIGGLEGVKRELQELVQ 123
Y + K+ + + I ++ P+IT D+ G EGV++ L +L++
Sbjct: 110 YDVQKAQRGIVYIDQIDKISRKSDNPSIT-RDVSG-EGVQQALLKLIE 155
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGESEANVRDIFDKVTMENFR 82
+L GP G GKTLLA+ +A F L + GE +V +I K+ ++
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE---DVENIIQKL-LQKCD 109
Query: 83 YAMGKSSPSALR-ETIVEV------PNITWEDIGGLEGVKRELQELVQ 123
Y + K+ + + I ++ P+IT D+ G EGV++ L +L++
Sbjct: 110 YDVQKAQRGIVYIDQIDKISRKSDNPSIT-RDVSG-EGVQQALLKLIE 155
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
Mutant) From Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 102 NITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQ 147
++ + D+GG GV E +E ++ D Y + N G DLT IC+
Sbjct: 236 DLRFFDVGGGIGVSYENEETIKLYD--YAQGILNALQGLDLTIICE 279
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 102 NITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQ 147
++ + D+GG GV E +E ++ D Y + N G DLT IC+
Sbjct: 236 DLRFFDVGGGIGVSYENEETIKLYD--YAQGILNALQGLDLTIICE 279
>pdb|4EZC|A Chain A, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus
pdb|4EZC|B Chain B, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus
pdb|4EZC|C Chain C, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus
pdb|4EZD|A Chain A, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus Bound To Selenourea
pdb|4EZD|B Chain B, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus Bound To Selenourea
pdb|4EZD|C Chain C, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus Bound To Selenourea
Length = 384
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 90 PSALRETIVEVPNITWEDIGGLEGVK 115
PS L + VPN+TW D+ L+ +K
Sbjct: 194 PSTLITPVTSVPNVTWPDLSALQLLK 219
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLL 37
++H + F + RG++ GPPG GKT++
Sbjct: 1035 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1064
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLL 37
++H + F + RG++ GPPG GKT++
Sbjct: 1254 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1283
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIA 42
LK +P +F GP G GKT LA+A+A
Sbjct: 514 LKDPKRPIGSFIFLGPTGVGKTELARALA 542
>pdb|2JBL|C Chain C, Photosynthetic Reaction Center From Blastochloris Viridis
pdb|3T6E|C Chain C, Crystal Structure Of The Reaction Centre From
Blastochloris Viridis Strain Dsm 133 (Atcc 19567)
Substrain-94
Length = 356
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLMF 263
RR ++DA Y FA + S GTN F N +S G S P GI ++
Sbjct: 240 RRPLSDA----YATFALMMSISDSLGTNCTFCHNAQTFESWGKKSTPQRAIAWWGIRMVR 295
Query: 264 PSNPN 268
N N
Sbjct: 296 DLNMN 300
>pdb|3T4C|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
Length = 288
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 251 ANESGTGGILLMFPSNPNQSQSGGPNSAPANESG 284
A +G G+ + NP +++S GPN+ P N G
Sbjct: 231 AVATGVAGLFMETHPNPAEAKSDGPNAVPLNRMG 264
>pdb|3TML|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
Length = 288
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 251 ANESGTGGILLMFPSNPNQSQSGGPNSAPANESG 284
A +G G+ + NP +++S GPN+ P N G
Sbjct: 231 AVATGVAGLFMETHPNPAEAKSDGPNAVPLNRMG 264
>pdb|1PRC|C Chain C, Crystallographic Refinement At 2.3 Angstroms Resolution
And Refined Model Of The Photosynthetic Reaction Center
From Rhodopseudomonas Viridis
pdb|2PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Ubiquinone-2 Complex)
pdb|3PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Qb- Depleted)
pdb|5PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Atrazine Complex)
pdb|6PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Dg- 420314 (Triazine) Complex)
pdb|7PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Dg- 420315 (Triazine) Complex)
pdb|1DXR|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis - His L168 Phe Mutant (Terbutryn Complex)
pdb|1R2C|C Chain C, Photosynthetic Reaction Center Blastochloris Viridis
(Atcc)
pdb|2I5N|C Chain C, 1.96 A X-Ray Structure Of Photosynthetic Reaction Center
From Rhodopseudomonas Viridis:crystals Grown By
Microfluidic Technique
pdb|3D38|C Chain C, Crystal Structure Of New Trigonal Form Of Photosynthetic
Reaction Center From Blastochloris Viridis. Crystals
Grown In Microfluidics By Detergent Capture.
pdb|2WJM|C Chain C, Lipidic Sponge Phase Crystal Structure Of The
Photosynthetic Reaction Centre From Blastochloris
Viridis (Low Dose)
pdb|2WJN|C Chain C, Lipidic Sponge Phase Crystal Structure Of Photosynthetic
Reaction Centre From Blastochloris Viridis (High Dose)
pdb|3G7F|C Chain C, Crystal Structure Of Blastochloris Viridis Heterodimer
Mutant Reaction Center
pdb|2X5U|C Chain C, 80 Microsecond Laue Diffraction Snapshot From Crystals Of
A Photosynthetic Reaction Centre Without Illumination.
pdb|2X5V|C Chain C, 80 Microsecond Laue Diffraction Snapshot From Crystals Of
A Photosynthetic Reaction Centre 3 Millisecond Following
Photoactivation
pdb|4AC5|C Chain C, Lipidic Sponge Phase Crystal Structure Of The Bl. Viridis
Reaction Centre Solved Using Serial Femtosecond
Crystallography
Length = 336
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262
RR ++DA Y FA + S GTN F N +S G S P GI ++
Sbjct: 220 RRPLSDA----YATFALMMSISDSLGTNCTFCHNAQTFESWGKKSTPQRAIAWWGIRMV 274
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 24 VLFYGPPGCGKTLLAKAIA 42
V+F GP GCGK+ L + IA
Sbjct: 32 VVFVGPSGCGKSTLLRMIA 50
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 24 VLFYGPPGCGKTLLAKAIA 42
V+F GP GCGK+ L + IA
Sbjct: 32 VVFVGPSGCGKSTLLRMIA 50
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter
(Malk) In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter
(Malk) In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 24 VLFYGPPGCGKTLLAKAIA 42
V+F GP GCGK+ L + IA
Sbjct: 32 VVFVGPSGCGKSTLLRMIA 50
>pdb|1VRN|C Chain C, Photosynthetic Reaction Center Blastochloris Viridis
(Atcc)
Length = 332
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262
RR ++DA Y FA + S GTN F N +S G S P GI ++
Sbjct: 220 RRPLSDA----YATFALMMSISDSLGTNCTFCHNAQTFESWGKKSTPQRAIAWWGIRMV 274
>pdb|1O60|A Chain A, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|B Chain B, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|C Chain C, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|D Chain D, Crystal Structure Of Kdo-8-Phosphate Synthase
Length = 292
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 255 GTGGILLMFPSNPNQSQSGGPNSAPANESGTGGILQDEAEDDL 297
G G+ L NPNQ++ GP++ P + + G + Q +A DDL
Sbjct: 232 GIAGLFLEAHPNPNQAKCDGPSALPLS-ALEGFVSQXKAIDDL 273
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 60 MWFGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIG--GLEG--VK 115
+ + EANVR + K+T E + + P+AL ++P+I D+ G++G V
Sbjct: 5 LVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVC 64
Query: 116 RELQE 120
R+L++
Sbjct: 65 RKLKD 69
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 60 MWFGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIG--GLEG--VK 115
+ + EANVR + K+T E + + P+AL ++P+I D+ G++G V
Sbjct: 6 LVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVC 65
Query: 116 RELQE 120
R+L++
Sbjct: 66 RKLKD 70
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52
+F + P+ +L G PG GKT L K +A++ +I+V
Sbjct: 7 EFMLLPN--ILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 24 VLFYGP-PGCGKTLLAKAIANECQANFISVKGPE 56
++ + P PG GKT +AKA+ ++ A+ + V G +
Sbjct: 50 IILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 25 LFYGPPGCGKTLLAKAIANECQANFISV 52
L G PG GKT L AI E Q N I +
Sbjct: 37 LLGGQPGSGKTSLRSAIFEETQGNVIVI 64
>pdb|3T6D|C Chain C, Crystal Structure Of The Reaction Centre From
Blastochloris Viridis Strain Dsm 133 (Atcc 19567)
Substrain-08
Length = 356
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLMF 263
RR ++DA Y FA + S GTN F N ++ G S P GI ++
Sbjct: 240 RRPLSDA----YATFALMMSISDSLGTNCTFCHNAQSFETWGKKSTPQRAIAWWGIRMVR 295
Query: 264 PSNPN 268
N N
Sbjct: 296 DMNMN 300
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 25/95 (26%)
Query: 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIAN----------ECQANFISVKGPELLTMWFGE 64
+ ++ +R GP GCGK+ L +AIAN EC+ ++
Sbjct: 455 QLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYV-------------- 500
Query: 65 SEANVRDIFDKVTMENFRYAMGKSSPSALRETIVE 99
E ++ ++ +F + G + A+++ ++E
Sbjct: 501 -EHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIE 534
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 25/95 (26%)
Query: 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIAN----------ECQANFISVKGPELLTMWFGE 64
+ ++ +R GP GCGK+ L +AIAN EC+ ++
Sbjct: 449 QLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYV-------------- 494
Query: 65 SEANVRDIFDKVTMENFRYAMGKSSPSALRETIVE 99
E ++ ++ +F + G + A+++ ++E
Sbjct: 495 -EHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIE 528
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 19 QPSRGVLFYGPPGCGKTLLAKAIA 42
+P LF GP G GKT LAK +A
Sbjct: 586 RPIGSFLFLGPTGVGKTELAKTLA 609
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISV 52
+L G PG GKT L K +A++ +I+V
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 25/82 (30%)
Query: 28 GPPGCGKTLLAKAIAN----------ECQANFISVKGPELLTMWFGESEANVRDIFDKVT 77
GP GCGK+ L +AIAN EC+ ++ E ++ +
Sbjct: 468 GPNGCGKSTLMRAIANGQVDGFPTQEECRTVYV---------------EHDIDGTHSDTS 512
Query: 78 MENFRYAMGKSSPSALRETIVE 99
+ +F + G + A+++ ++E
Sbjct: 513 VLDFVFESGVGTKEAIKDKLIE 534
>pdb|4A15|A Chain A, Crystal Structure Of An Xpd Dna Complex
Length = 620
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLA 38
Y VE + FL+ +Q S GV P G GKT++A
Sbjct: 7 YQVEAID-FLRSSLQKSYGVALESPTGSGKTIMA 39
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 19 QPSRGVLFYGPPGCGKTLLAKAIA 42
+P LF GP G GKT LAK +A
Sbjct: 42 RPIGSFLFLGPTGVGKTELAKTLA 65
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 19 QPSRGVLFYGPPGCGKTLLAKAIA 42
+P LF GP G GKT LAK +A
Sbjct: 45 RPIGSFLFLGPTGVGKTELAKTLA 68
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 24 VLFYGPPGCGKTLLAKAIANEC-----QANFISV 52
+LF GPPG GKT A A+A + + NFI +
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 18 MQPSRGVLFYGPPGCGKTLLAKAIANEC 45
M + V+F GPPG GK A +A E
Sbjct: 1 MDVGQAVIFLGPPGAGKGTQASRLAQEL 28
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 24 VLFYGPPGCGKTLLAKAIANE 44
+LF GPPG GKT A A+A +
Sbjct: 41 LLFSGPPGTGKTATAIALARD 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,640,845
Number of Sequences: 62578
Number of extensions: 412035
Number of successful extensions: 1122
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 939
Number of HSP's gapped (non-prelim): 186
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)