Query psy13773
Match_columns 299
No_of_seqs 271 out of 2382
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 20:08:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733|consensus 100.0 4.1E-47 9E-52 360.5 10.8 265 7-287 209-573 (802)
2 KOG0736|consensus 100.0 2.7E-44 5.9E-49 348.4 12.3 232 19-262 429-722 (953)
3 KOG0730|consensus 100.0 4.8E-40 1E-44 315.8 10.5 225 2-263 199-486 (693)
4 TIGR01243 CDC48 AAA family ATP 100.0 7E-34 1.5E-38 289.1 14.8 248 2-262 193-504 (733)
5 KOG0730|consensus 100.0 2.1E-32 4.7E-37 263.2 15.8 192 2-221 449-692 (693)
6 KOG0738|consensus 100.0 4.3E-32 9.3E-37 247.2 16.4 209 1-223 226-489 (491)
7 KOG0733|consensus 100.0 8.6E-32 1.9E-36 256.4 16.3 207 1-225 525-791 (802)
8 COG1222 RPT1 ATP-dependent 26S 100.0 1.4E-31 3E-36 242.3 14.1 174 1-204 165-393 (406)
9 KOG0735|consensus 100.0 6.7E-31 1.5E-35 253.6 12.4 217 18-262 428-718 (952)
10 KOG0739|consensus 100.0 8.6E-30 1.9E-34 225.5 11.1 223 1-224 147-437 (439)
11 KOG0736|consensus 100.0 8.8E-28 1.9E-32 233.9 15.9 207 2-222 687-951 (953)
12 KOG0741|consensus 99.9 3.6E-27 7.7E-32 221.8 14.1 236 6-261 241-554 (744)
13 COG0464 SpoVK ATPases of the A 99.9 1E-25 2.2E-30 220.2 14.3 231 5-262 2-293 (494)
14 TIGR01243 CDC48 AAA family ATP 99.9 1.5E-24 3.3E-29 220.8 18.9 211 2-224 468-731 (733)
15 KOG0737|consensus 99.9 1E-24 2.2E-29 198.6 13.8 209 1-214 106-370 (386)
16 KOG0728|consensus 99.9 1.4E-23 3.1E-28 182.4 12.0 173 1-203 161-388 (404)
17 KOG0735|consensus 99.9 2E-23 4.4E-28 202.1 13.4 202 2-224 682-937 (952)
18 KOG0729|consensus 99.9 2.1E-23 4.5E-28 182.7 9.6 174 1-204 191-419 (435)
19 COG0464 SpoVK ATPases of the A 99.9 1E-22 2.2E-27 199.1 14.2 178 2-208 257-488 (494)
20 KOG0727|consensus 99.9 1.1E-22 2.4E-27 177.0 11.9 173 1-203 169-396 (408)
21 KOG0740|consensus 99.9 7.2E-23 1.6E-27 192.1 9.6 206 1-224 167-425 (428)
22 KOG0726|consensus 99.9 2.3E-22 5E-27 178.0 11.6 172 2-203 200-426 (440)
23 KOG0652|consensus 99.9 1.2E-22 2.6E-27 177.5 8.8 174 1-204 185-413 (424)
24 PTZ00454 26S protease regulato 99.9 4.7E-22 1E-26 188.4 13.5 174 2-205 160-388 (398)
25 CHL00195 ycf46 Ycf46; Provisio 99.9 8.9E-21 1.9E-25 183.5 17.4 179 11-220 249-482 (489)
26 PRK03992 proteasome-activating 99.9 2.9E-21 6.3E-26 183.3 13.5 176 2-207 146-376 (389)
27 PTZ00361 26 proteosome regulat 99.8 1.3E-20 2.8E-25 180.0 13.9 173 2-204 198-425 (438)
28 KOG0731|consensus 99.8 2.4E-20 5.2E-25 184.8 12.4 170 5-204 328-554 (774)
29 KOG0734|consensus 99.8 1.7E-19 3.8E-24 170.4 10.8 152 5-156 321-524 (752)
30 TIGR01242 26Sp45 26S proteasom 99.8 4.9E-19 1.1E-23 166.8 13.6 171 3-203 138-363 (364)
31 COG1223 Predicted ATPase (AAA+ 99.8 4.3E-18 9.3E-23 148.9 12.4 166 7-205 140-357 (368)
32 TIGR01241 FtsH_fam ATP-depende 99.8 1.1E-17 2.4E-22 163.6 16.7 169 6-204 73-296 (495)
33 KOG0651|consensus 99.8 1.7E-18 3.7E-23 154.6 9.5 172 2-203 147-373 (388)
34 COG0465 HflB ATP-dependent Zn 99.8 1.1E-18 2.4E-23 170.1 8.2 172 3-204 165-391 (596)
35 CHL00206 ycf2 Ycf2; Provisiona 99.7 1.6E-17 3.4E-22 175.8 13.6 167 6-204 1615-1878(2281)
36 KOG0732|consensus 99.7 9E-18 2E-22 170.7 7.2 211 2-262 280-548 (1080)
37 CHL00176 ftsH cell division pr 99.7 4.9E-17 1.1E-21 162.1 12.4 169 5-203 200-423 (638)
38 COG1222 RPT1 ATP-dependent 26S 99.7 8.7E-18 1.9E-22 152.9 0.8 57 204-262 145-202 (406)
39 TIGR03689 pup_AAA proteasome A 99.7 1.8E-15 3.9E-20 146.8 15.6 77 2-78 197-283 (512)
40 PRK10733 hflB ATP-dependent me 99.7 8.9E-16 1.9E-20 154.2 13.8 169 7-205 171-394 (644)
41 PLN00020 ribulose bisphosphate 99.5 9.6E-14 2.1E-18 128.3 12.3 142 16-157 143-355 (413)
42 KOG0739|consensus 99.5 5.8E-15 1.3E-19 131.6 2.6 68 193-262 116-183 (439)
43 COG1126 GlnQ ABC-type polar am 99.4 4.5E-13 9.9E-18 114.9 7.1 158 14-205 21-184 (240)
44 KOG0737|consensus 99.4 5.2E-14 1.1E-18 128.9 1.3 55 207-263 89-145 (386)
45 KOG0738|consensus 99.4 1.4E-13 3E-18 126.6 2.1 67 194-262 192-262 (491)
46 TIGR02639 ClpA ATP-dependent C 99.4 2.2E-12 4.7E-17 131.8 10.8 60 19-78 201-272 (731)
47 PTZ00454 26S protease regulato 99.3 1.1E-13 2.4E-18 131.4 -0.4 57 204-262 139-196 (398)
48 COG1124 DppF ABC-type dipeptid 99.3 8.3E-13 1.8E-17 115.2 4.7 158 14-205 26-189 (252)
49 COG3638 ABC-type phosphate/pho 99.3 5.2E-12 1.1E-16 109.7 8.7 163 14-204 23-194 (258)
50 COG1125 OpuBA ABC-type proline 99.3 2E-12 4.4E-17 113.4 6.0 158 14-204 20-182 (309)
51 KOG0728|consensus 99.3 4.2E-13 9.2E-18 117.3 1.4 57 204-262 141-198 (404)
52 TIGR03689 pup_AAA proteasome A 99.3 2.5E-13 5.4E-18 132.0 -0.7 68 193-262 165-233 (512)
53 COG1117 PstB ABC-type phosphat 99.3 5.3E-12 1.1E-16 108.2 6.7 159 14-206 26-198 (253)
54 COG1120 FepC ABC-type cobalami 99.2 7.2E-12 1.6E-16 111.6 5.7 128 14-152 21-154 (258)
55 COG1136 SalX ABC-type antimicr 99.2 1.3E-11 2.9E-16 107.8 6.5 160 13-203 23-188 (226)
56 KOG0727|consensus 99.2 1.1E-12 2.3E-17 115.0 -0.9 58 203-262 148-206 (408)
57 COG3842 PotA ABC-type spermidi 99.2 1.4E-11 3E-16 114.4 6.4 127 14-155 24-155 (352)
58 PRK03992 proteasome-activating 99.2 1.7E-12 3.7E-17 123.4 -0.2 57 204-262 125-182 (389)
59 COG1116 TauB ABC-type nitrate/ 99.2 1.7E-11 3.8E-16 107.6 5.7 152 14-203 22-176 (248)
60 KOG0726|consensus 99.2 2.6E-12 5.5E-17 114.6 0.4 57 205-263 180-237 (440)
61 PTZ00361 26 proteosome regulat 99.2 2.7E-12 5.9E-17 123.0 0.2 57 204-262 177-234 (438)
62 COG3839 MalK ABC-type sugar tr 99.2 1E-11 2.2E-16 114.7 4.0 125 14-152 22-149 (338)
63 KOG0729|consensus 99.2 4.9E-12 1.1E-16 111.6 1.2 57 204-262 171-228 (435)
64 COG1135 AbcC ABC-type metal io 99.2 3.1E-11 6.8E-16 108.7 6.2 159 14-204 25-188 (339)
65 KOG0652|consensus 99.2 7E-12 1.5E-16 110.3 1.1 58 203-262 164-222 (424)
66 KOG0744|consensus 99.2 1.7E-10 3.7E-15 104.3 9.9 61 19-79 175-244 (423)
67 COG1123 ATPase components of v 99.2 1.8E-11 4E-16 118.5 3.6 163 14-205 310-477 (539)
68 COG2884 FtsE Predicted ATPase 99.1 1.7E-10 3.8E-15 97.3 5.7 157 14-203 21-183 (223)
69 TIGR01242 26Sp45 26S proteasom 99.0 2.6E-11 5.7E-16 114.4 -0.3 57 204-262 116-173 (364)
70 COG0444 DppD ABC-type dipeptid 99.0 8.7E-11 1.9E-15 106.6 3.1 181 14-220 24-222 (316)
71 PRK11034 clpA ATP-dependent Cl 99.0 1.3E-09 2.8E-14 111.1 11.6 59 19-77 205-275 (758)
72 CHL00195 ycf46 Ycf46; Provisio 99.0 2.2E-10 4.8E-15 111.4 5.7 99 125-262 165-276 (489)
73 TIGR02314 ABC_MetN D-methionin 99.0 1.8E-10 3.9E-15 107.7 4.8 160 14-204 24-187 (343)
74 COG4175 ProV ABC-type proline/ 99.0 7.1E-10 1.5E-14 100.2 7.7 131 14-152 47-180 (386)
75 COG1121 ZnuC ABC-type Mn/Zn tr 99.0 6.4E-10 1.4E-14 98.7 6.9 158 14-205 23-187 (254)
76 COG4619 ABC-type uncharacteriz 99.0 7.9E-10 1.7E-14 91.7 6.8 119 14-147 22-144 (223)
77 TIGR01186 proV glycine betaine 99.0 2.5E-10 5.3E-15 107.5 4.3 159 14-203 12-175 (363)
78 COG1122 CbiO ABC-type cobalt t 99.0 3.5E-11 7.6E-16 106.5 -1.8 160 14-205 23-186 (235)
79 COG1127 Ttg2A ABC-type transpo 99.0 1.3E-09 2.8E-14 95.2 7.7 162 14-206 27-194 (263)
80 TIGR00960 3a0501s02 Type II (G 99.0 5.5E-10 1.2E-14 97.6 5.5 160 14-204 22-185 (216)
81 PRK11650 ugpC glycerol-3-phosp 99.0 2.9E-10 6.3E-15 106.9 3.3 155 14-204 23-181 (356)
82 COG3840 ThiQ ABC-type thiamine 99.0 2.4E-09 5.2E-14 89.9 8.0 121 15-149 19-142 (231)
83 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.9 6.5E-10 1.4E-14 97.2 4.5 161 14-204 23-187 (218)
84 PRK11022 dppD dipeptide transp 98.9 4.4E-10 9.5E-15 104.5 3.5 162 14-204 26-200 (326)
85 COG4608 AppF ABC-type oligopep 98.9 1E-09 2.2E-14 97.8 5.6 90 14-152 32-125 (268)
86 COG1123 ATPase components of v 98.9 4.2E-10 9.1E-15 109.2 3.1 164 14-204 28-201 (539)
87 PRK09473 oppD oligopeptide tra 98.9 4.5E-10 9.8E-15 104.6 3.1 162 14-204 35-208 (330)
88 TIGR03265 PhnT2 putative 2-ami 98.9 4.4E-10 9.5E-15 105.6 2.9 154 14-203 23-180 (353)
89 COG1118 CysA ABC-type sulfate/ 98.9 8.1E-10 1.7E-14 99.5 4.4 129 14-154 21-155 (345)
90 KOG0651|consensus 98.9 4.1E-10 8.8E-15 101.4 2.2 76 206-283 128-210 (388)
91 PRK15079 oligopeptide ABC tran 98.9 6E-10 1.3E-14 103.8 3.3 162 14-204 40-208 (331)
92 cd03292 ABC_FtsE_transporter F 98.9 1.4E-09 3.1E-14 94.7 5.5 160 14-204 20-183 (214)
93 COG1131 CcmA ABC-type multidru 98.9 6.8E-10 1.5E-14 101.7 3.6 155 14-205 24-184 (293)
94 PRK11432 fbpC ferric transport 98.9 6.3E-10 1.4E-14 104.4 3.4 154 14-203 25-182 (351)
95 PRK10070 glycine betaine trans 98.9 1E-09 2.3E-14 104.5 4.6 160 14-203 47-210 (400)
96 TIGR02673 FtsE cell division A 98.9 1.5E-09 3.2E-14 94.6 5.2 160 14-204 21-184 (214)
97 TIGR03608 L_ocin_972_ABC putat 98.9 1.1E-09 2.5E-14 94.7 4.5 161 14-204 17-181 (206)
98 cd03225 ABC_cobalt_CbiO_domain 98.9 7E-10 1.5E-14 96.5 3.1 157 14-204 20-181 (211)
99 TIGR03258 PhnT 2-aminoethylpho 98.9 6.5E-10 1.4E-14 104.7 3.0 152 14-203 24-183 (362)
100 PRK11153 metN DL-methionine tr 98.9 1.3E-09 2.8E-14 102.1 4.8 159 14-203 24-186 (343)
101 PRK11308 dppF dipeptide transp 98.9 7.8E-10 1.7E-14 102.9 3.3 161 14-204 34-201 (327)
102 TIGR02211 LolD_lipo_ex lipopro 98.9 2.4E-09 5.2E-14 93.8 6.0 160 14-203 24-187 (221)
103 PRK15093 antimicrobial peptide 98.9 9.6E-10 2.1E-14 102.4 3.6 164 14-204 26-205 (330)
104 PRK13650 cbiO cobalt transport 98.9 7.2E-10 1.6E-14 100.8 2.6 156 14-203 26-186 (279)
105 PRK14247 phosphate ABC transpo 98.9 1.4E-09 3E-14 97.2 4.4 159 14-204 22-193 (250)
106 TIGR01188 drrA daunorubicin re 98.9 1.7E-09 3.6E-14 99.5 5.0 156 14-204 12-171 (302)
107 PRK09452 potA putrescine/sperm 98.9 9E-10 2E-14 104.2 3.3 153 14-204 33-191 (375)
108 PRK10908 cell division protein 98.9 2.5E-09 5.5E-14 93.8 5.9 160 14-204 21-184 (222)
109 CHL00095 clpC Clp protease ATP 98.9 1.7E-08 3.7E-13 104.6 12.8 63 16-78 195-269 (821)
110 cd03214 ABC_Iron-Siderophores_ 98.9 2.7E-09 6E-14 90.7 5.6 124 14-204 18-144 (180)
111 PF00004 AAA: ATPase family as 98.9 3.2E-09 7E-14 84.5 5.6 55 24-78 1-55 (132)
112 TIGR01241 FtsH_fam ATP-depende 98.9 3.5E-10 7.5E-15 110.9 -0.0 56 204-262 49-105 (495)
113 cd03258 ABC_MetN_methionine_tr 98.9 2.9E-09 6.4E-14 94.0 5.8 159 14-203 24-186 (233)
114 cd03261 ABC_Org_Solvent_Resist 98.9 1.9E-09 4.1E-14 95.4 4.5 160 14-203 19-182 (235)
115 TIGR02315 ABC_phnC phosphonate 98.9 5.9E-09 1.3E-13 92.6 7.3 162 14-203 21-191 (243)
116 cd03269 ABC_putative_ATPase Th 98.9 2.7E-09 5.9E-14 92.8 5.0 153 14-204 19-175 (210)
117 cd03260 ABC_PstB_phosphate_tra 98.9 4.4E-09 9.4E-14 92.6 6.3 159 14-205 19-189 (227)
118 PRK09536 btuD corrinoid ABC tr 98.8 2.5E-09 5.3E-14 102.0 5.0 159 14-204 22-186 (402)
119 PRK11629 lolD lipoprotein tran 98.8 2.5E-09 5.5E-14 94.5 4.7 160 14-203 28-191 (233)
120 PRK11607 potG putrescine trans 98.8 1.5E-09 3.2E-14 102.9 3.4 125 14-153 38-166 (377)
121 KOG0742|consensus 98.8 2.5E-08 5.4E-13 93.0 11.3 58 20-78 383-440 (630)
122 cd03263 ABC_subfamily_A The AB 98.8 3.7E-09 7.9E-14 92.6 5.5 157 14-205 21-181 (220)
123 PRK13640 cbiO cobalt transport 98.8 1.1E-09 2.5E-14 99.7 2.2 156 14-203 26-189 (282)
124 PRK10584 putative ABC transpor 98.8 2.9E-09 6.2E-14 93.8 4.7 160 14-203 29-192 (228)
125 COG4172 ABC-type uncharacteriz 98.8 3.4E-09 7.4E-14 98.7 5.3 133 14-152 306-442 (534)
126 PRK13647 cbiO cobalt transport 98.8 1.1E-09 2.4E-14 99.3 2.1 157 14-204 24-185 (274)
127 PRK11000 maltose/maltodextrin 98.8 1.6E-09 3.4E-14 102.5 3.2 154 14-203 22-179 (369)
128 cd03235 ABC_Metallic_Cations A 98.8 5.2E-09 1.1E-13 91.2 6.2 155 14-204 18-179 (213)
129 cd03265 ABC_DrrA DrrA is the A 98.8 3.3E-09 7.2E-14 92.9 4.9 155 14-203 19-177 (220)
130 cd03301 ABC_MalK_N The N-termi 98.8 2.6E-09 5.7E-14 93.0 4.2 154 14-203 19-176 (213)
131 cd03266 ABC_NatA_sodium_export 98.8 3.9E-09 8.5E-14 92.2 5.3 156 14-204 24-183 (218)
132 cd03259 ABC_Carb_Solutes_like 98.8 2.5E-09 5.4E-14 93.2 4.0 154 14-203 19-176 (213)
133 PRK13635 cbiO cobalt transport 98.8 1.4E-09 3E-14 99.0 2.4 157 14-204 26-187 (279)
134 TIGR01277 thiQ thiamine ABC tr 98.8 3.7E-09 8.1E-14 92.2 4.9 156 13-204 16-175 (213)
135 COG4559 ABC-type hemin transpo 98.8 1.2E-08 2.6E-13 87.7 7.7 125 14-149 20-148 (259)
136 TIGR03415 ABC_choXWV_ATP choli 98.8 2.6E-09 5.6E-14 101.1 4.0 161 14-204 43-211 (382)
137 PRK13646 cbiO cobalt transport 98.8 4E-09 8.7E-14 96.3 5.2 160 14-203 26-191 (286)
138 PRK10247 putative ABC transpor 98.8 4.8E-09 1E-13 92.4 5.4 154 14-203 26-183 (225)
139 COG4181 Predicted ABC-type tra 98.8 4.1E-09 9E-14 87.7 4.6 133 14-154 29-164 (228)
140 KOG0740|consensus 98.8 1.4E-09 3E-14 102.9 2.0 67 194-262 137-203 (428)
141 PRK13538 cytochrome c biogenes 98.8 4.1E-09 9E-14 91.3 4.8 152 14-203 20-175 (204)
142 cd03226 ABC_cobalt_CbiO_domain 98.8 4.4E-09 9.5E-14 91.2 4.9 149 14-203 19-172 (205)
143 KOG0734|consensus 98.8 8.5E-10 1.8E-14 105.4 0.5 54 206-262 300-354 (752)
144 cd03262 ABC_HisP_GlnQ_permease 98.8 6.7E-09 1.5E-13 90.4 6.1 160 14-204 19-182 (213)
145 cd03294 ABC_Pro_Gly_Bertaine T 98.8 3.3E-09 7.2E-14 96.0 4.3 160 14-203 43-206 (269)
146 PRK10851 sulfate/thiosulfate t 98.8 3E-09 6.4E-14 100.0 3.9 157 14-204 21-183 (353)
147 PRK13643 cbiO cobalt transport 98.8 5.3E-09 1.2E-13 95.6 5.4 161 14-204 25-191 (288)
148 PRK10575 iron-hydroxamate tran 98.8 7.5E-09 1.6E-13 93.4 6.2 159 14-203 30-193 (265)
149 TIGR01166 cbiO cobalt transpor 98.8 3.2E-09 6.9E-14 90.9 3.5 158 14-203 11-173 (190)
150 cd03298 ABC_ThiQ_thiamine_tran 98.8 5.8E-09 1.3E-13 90.7 5.2 156 13-204 16-175 (211)
151 PRK14267 phosphate ABC transpo 98.8 4.1E-09 8.9E-14 94.3 4.4 161 14-204 23-196 (253)
152 PRK10771 thiQ thiamine transpo 98.8 6.8E-09 1.5E-13 91.7 5.6 155 13-203 17-175 (232)
153 cd03295 ABC_OpuCA_Osmoprotecti 98.8 3.7E-09 8.1E-14 94.0 3.8 157 14-204 20-182 (242)
154 PRK13537 nodulation ABC transp 98.8 3.7E-09 7.9E-14 97.5 3.7 154 14-204 26-185 (306)
155 PRK13632 cbiO cobalt transport 98.8 2.3E-09 5.1E-14 97.0 2.4 156 14-203 28-188 (271)
156 cd03293 ABC_NrtD_SsuB_transpor 98.8 3E-09 6.5E-14 93.2 2.9 151 14-203 23-177 (220)
157 cd03218 ABC_YhbG The ABC trans 98.8 4.5E-09 9.8E-14 92.7 4.0 158 14-204 19-180 (232)
158 PRK13641 cbiO cobalt transport 98.8 6E-09 1.3E-13 95.2 4.8 161 14-204 26-192 (287)
159 cd03245 ABCC_bacteriocin_expor 98.8 1.3E-08 2.9E-13 89.0 6.8 152 14-205 23-188 (220)
160 TIGR02868 CydC thiol reductant 98.8 1E-08 2.2E-13 101.3 6.8 151 14-205 354-518 (529)
161 PRK14269 phosphate ABC transpo 98.8 6.7E-09 1.5E-13 92.6 5.0 159 14-204 21-189 (246)
162 PRK11831 putative ABC transpor 98.8 6.7E-09 1.4E-13 94.0 5.0 161 14-204 26-190 (269)
163 PRK13637 cbiO cobalt transport 98.8 1.7E-09 3.8E-14 98.7 1.2 158 14-203 26-190 (287)
164 KOG0732|consensus 98.8 1.6E-09 3.4E-14 111.3 1.0 56 205-262 260-316 (1080)
165 PRK13548 hmuV hemin importer A 98.8 8.6E-09 1.9E-13 92.7 5.7 163 14-204 21-187 (258)
166 TIGR01978 sufC FeS assembly AT 98.8 6E-09 1.3E-13 92.5 4.6 161 14-204 19-191 (243)
167 cd03268 ABC_BcrA_bacitracin_re 98.8 7.1E-09 1.5E-13 90.0 4.8 151 14-204 19-173 (208)
168 cd03219 ABC_Mj1267_LivG_branch 98.8 3.1E-09 6.7E-14 94.0 2.6 161 14-204 19-190 (236)
169 PRK13652 cbiO cobalt transport 98.8 2.2E-09 4.9E-14 97.5 1.5 156 14-203 23-183 (277)
170 TIGR00972 3a0107s01c2 phosphat 98.8 8.5E-09 1.8E-13 92.0 5.2 160 14-204 20-191 (247)
171 PRK11248 tauB taurine transpor 98.8 7E-09 1.5E-13 93.1 4.6 151 14-203 20-174 (255)
172 PRK09493 glnQ glutamine ABC tr 98.8 1E-08 2.2E-13 91.0 5.7 160 14-204 20-183 (240)
173 TIGR03864 PQQ_ABC_ATP ABC tran 98.8 6.4E-09 1.4E-13 92.1 4.2 153 14-203 20-178 (236)
174 cd03264 ABC_drug_resistance_li 98.8 7.6E-09 1.6E-13 90.0 4.6 155 14-204 19-177 (211)
175 PRK13634 cbiO cobalt transport 98.8 9.5E-09 2.1E-13 94.0 5.5 160 14-203 26-191 (290)
176 COG4604 CeuD ABC-type enteroch 98.8 8.2E-09 1.8E-13 87.8 4.5 123 14-148 20-147 (252)
177 COG4987 CydC ABC-type transpor 98.8 4.8E-08 1E-12 93.9 10.3 149 14-203 357-520 (573)
178 PRK14250 phosphate ABC transpo 98.8 9.4E-09 2E-13 91.4 5.2 152 14-203 22-177 (241)
179 TIGR03522 GldA_ABC_ATP gliding 98.8 7.4E-09 1.6E-13 95.3 4.6 154 14-204 21-180 (301)
180 TIGR02142 modC_ABC molybdenum 98.7 6.3E-09 1.4E-13 97.9 4.2 159 13-203 15-177 (354)
181 cd03296 ABC_CysA_sulfate_impor 98.7 8E-09 1.7E-13 91.7 4.6 156 14-203 21-182 (239)
182 PRK11231 fecE iron-dicitrate t 98.7 1.6E-08 3.4E-13 90.7 6.5 159 14-203 21-184 (255)
183 PRK14273 phosphate ABC transpo 98.7 1.1E-08 2.3E-13 91.7 5.3 160 14-204 26-197 (254)
184 PRK10895 lipopolysaccharide AB 98.7 8.3E-09 1.8E-13 91.7 4.5 159 14-204 22-184 (241)
185 TIGR03873 F420-0_ABC_ATP propo 98.7 1.3E-08 2.9E-13 91.2 5.8 160 14-204 20-184 (256)
186 TIGR01184 ntrCD nitrate transp 98.7 1.1E-08 2.3E-13 90.5 5.1 151 14-203 4-160 (230)
187 PRK14274 phosphate ABC transpo 98.7 1.2E-08 2.7E-13 91.6 5.6 160 14-204 31-202 (259)
188 COG0411 LivG ABC-type branched 98.7 2.1E-09 4.5E-14 94.1 0.4 133 14-154 23-167 (250)
189 TIGR01288 nodI ATP-binding ABC 98.7 8.7E-09 1.9E-13 94.9 4.5 156 14-204 23-182 (303)
190 PRK13536 nodulation factor exp 98.7 5.9E-09 1.3E-13 97.5 3.4 156 14-204 60-219 (340)
191 COG0396 sufC Cysteine desulfur 98.7 1.4E-08 3E-13 88.3 5.3 125 14-146 23-154 (251)
192 PRK10744 pstB phosphate transp 98.7 1.3E-08 2.8E-13 91.5 5.4 160 14-204 32-203 (260)
193 PRK14235 phosphate transporter 98.7 1.6E-08 3.4E-13 91.5 5.9 160 14-204 38-210 (267)
194 TIGR01189 ccmA heme ABC export 98.7 1E-08 2.3E-13 88.3 4.5 151 14-203 19-173 (198)
195 cd03224 ABC_TM1139_LivF_branch 98.7 7.8E-09 1.7E-13 90.5 3.8 156 14-204 19-179 (222)
196 PRK14241 phosphate transporter 98.7 9.1E-09 2E-13 92.4 4.3 160 14-204 23-195 (258)
197 PRK13648 cbiO cobalt transport 98.7 4.4E-09 9.5E-14 95.1 2.3 156 14-203 28-188 (269)
198 PRK10253 iron-enterobactin tra 98.7 1.6E-08 3.5E-13 91.2 5.9 159 14-203 26-189 (265)
199 PRK11124 artP arginine transpo 98.7 1.5E-08 3.2E-13 90.1 5.5 164 14-204 21-188 (242)
200 cd03256 ABC_PhnC_transporter A 98.7 1.6E-08 3.4E-13 89.8 5.6 162 14-203 20-190 (241)
201 PRK13633 cobalt transporter AT 98.7 8.3E-09 1.8E-13 93.9 3.9 157 14-203 29-190 (280)
202 COG1137 YhbG ABC-type (unclass 98.7 2.1E-09 4.5E-14 91.5 -0.1 161 14-206 23-188 (243)
203 TIGR02203 MsbA_lipidA lipid A 98.7 3.8E-08 8.2E-13 98.1 8.9 152 14-205 351-517 (571)
204 cd03254 ABCC_Glucan_exporter_l 98.7 2.3E-08 5E-13 88.0 6.5 44 14-57 22-67 (229)
205 PRK10938 putative molybdenum t 98.7 1.1E-08 2.3E-13 100.3 4.8 157 14-203 22-181 (490)
206 PRK13644 cbiO cobalt transport 98.7 7.8E-09 1.7E-13 93.8 3.6 158 14-204 21-183 (274)
207 PRK11176 lipid transporter ATP 98.7 4E-08 8.6E-13 98.2 8.9 151 14-204 362-527 (582)
208 PRK14240 phosphate transporter 98.7 1.5E-08 3.2E-13 90.5 5.2 160 14-204 22-193 (250)
209 PRK15112 antimicrobial peptide 98.7 9.9E-09 2.1E-13 92.7 4.1 157 14-203 32-195 (267)
210 PRK11144 modC molybdate transp 98.7 9.7E-09 2.1E-13 96.5 4.1 156 13-204 16-175 (352)
211 cd03299 ABC_ModC_like Archeal 98.7 1.1E-08 2.5E-13 90.5 4.3 154 14-203 18-175 (235)
212 PRK14270 phosphate ABC transpo 98.7 1.9E-08 4.1E-13 89.9 5.7 160 14-204 23-194 (251)
213 PRK13649 cbiO cobalt transport 98.7 1.3E-08 2.9E-13 92.5 4.7 161 14-204 26-192 (280)
214 COG4555 NatA ABC-type Na+ tran 98.7 1.2E-08 2.7E-13 87.0 3.9 154 14-204 21-180 (245)
215 TIGR03797 NHPM_micro_ABC2 NHPM 98.7 2.8E-08 6.2E-13 101.2 7.4 150 14-204 472-635 (686)
216 cd03300 ABC_PotA_N PotA is an 98.7 1.1E-08 2.4E-13 90.5 3.8 155 14-204 19-177 (232)
217 PRK13642 cbiO cobalt transport 98.7 5.9E-09 1.3E-13 94.7 2.1 156 14-203 26-186 (277)
218 PRK09984 phosphonate/organopho 98.7 2.7E-08 6E-13 89.5 6.4 164 14-203 23-198 (262)
219 PRK13638 cbiO cobalt transport 98.7 5E-09 1.1E-13 94.8 1.6 159 14-204 20-183 (271)
220 cd03244 ABCC_MRP_domain2 Domai 98.7 2.7E-08 6E-13 87.1 6.2 150 14-204 23-186 (221)
221 cd03234 ABCG_White The White s 98.7 1.9E-08 4.1E-13 88.5 5.2 157 14-204 26-190 (226)
222 cd03289 ABCC_CFTR2 The CFTR su 98.7 2.4E-08 5.2E-13 90.7 5.9 150 14-204 23-185 (275)
223 COG0410 LivF ABC-type branched 98.7 1.8E-08 3.8E-13 87.7 4.8 155 14-205 22-184 (237)
224 cd03297 ABC_ModC_molybdenum_tr 98.7 2.2E-08 4.7E-13 87.4 5.3 158 13-203 16-177 (214)
225 PRK11174 cysteine/glutathione 98.7 4.2E-08 9.1E-13 98.2 8.0 151 14-205 369-533 (588)
226 PRK14251 phosphate ABC transpo 98.7 2.2E-08 4.8E-13 89.5 5.4 159 14-204 23-194 (251)
227 PRK10790 putative multidrug tr 98.7 3.3E-08 7.1E-13 99.1 7.1 150 14-204 360-523 (592)
228 PRK15134 microcin C ABC transp 98.7 1.4E-08 3E-13 100.5 4.3 161 14-203 28-202 (529)
229 TIGR03411 urea_trans_UrtD urea 98.7 1E-08 2.3E-13 91.0 3.2 160 14-204 21-190 (242)
230 TIGR02982 heterocyst_DevA ABC 98.7 1.9E-08 4E-13 88.2 4.6 161 14-204 24-188 (220)
231 TIGR03410 urea_trans_UrtE urea 98.7 1.2E-08 2.5E-13 90.0 3.2 155 14-204 19-178 (230)
232 PRK14244 phosphate ABC transpo 98.7 2.4E-08 5.1E-13 89.3 5.2 161 14-204 24-196 (251)
233 TIGR02770 nickel_nikD nickel i 98.7 1E-08 2.2E-13 90.5 2.8 154 14-204 5-172 (230)
234 PRK14242 phosphate transporter 98.7 2.7E-08 5.8E-13 89.0 5.5 160 14-204 25-196 (253)
235 TIGR02323 CP_lyasePhnK phospho 98.7 1.5E-08 3.3E-13 90.6 3.9 161 14-203 22-194 (253)
236 PRK13547 hmuV hemin importer A 98.7 2.9E-08 6.4E-13 90.0 5.8 168 14-203 20-200 (272)
237 PRK14256 phosphate ABC transpo 98.7 2.2E-08 4.9E-13 89.5 5.0 160 14-204 23-195 (252)
238 PRK03695 vitamin B12-transport 98.7 2.6E-08 5.7E-13 89.0 5.4 163 14-204 15-180 (248)
239 cd03231 ABC_CcmA_heme_exporter 98.7 2.3E-08 4.9E-13 86.5 4.7 149 14-203 19-171 (201)
240 TIGR03375 type_I_sec_LssB type 98.7 4.7E-08 1E-12 99.7 7.7 151 14-205 484-649 (694)
241 PRK10261 glutathione transport 98.7 1.3E-08 2.8E-13 102.6 3.5 161 14-204 343-510 (623)
242 PRK11264 putative amino-acid A 98.7 2.6E-08 5.6E-13 88.9 5.1 165 14-204 22-191 (250)
243 PRK13651 cobalt transporter AT 98.7 1.9E-08 4E-13 92.8 4.3 163 14-204 26-212 (305)
244 TIGR02769 nickel_nikE nickel i 98.7 2E-08 4.3E-13 90.6 4.3 161 14-204 30-197 (265)
245 TIGR03005 ectoine_ehuA ectoine 98.7 2.5E-08 5.4E-13 89.2 4.9 164 14-203 19-192 (252)
246 COG4778 PhnL ABC-type phosphon 98.7 9.3E-08 2E-12 79.7 7.8 164 4-205 23-200 (235)
247 TIGR03796 NHPM_micro_ABC1 NHPM 98.7 3.3E-08 7.2E-13 101.0 6.4 150 14-203 498-661 (710)
248 PRK14237 phosphate transporter 98.7 2.5E-08 5.5E-13 90.1 4.9 160 14-204 39-210 (267)
249 cd03257 ABC_NikE_OppD_transpor 98.7 1.8E-08 3.8E-13 88.6 3.7 160 14-204 24-192 (228)
250 PRK14254 phosphate ABC transpo 98.6 2.4E-08 5.2E-13 91.2 4.7 158 14-204 58-227 (285)
251 PRK11160 cysteine/glutathione 98.6 5.4E-08 1.2E-12 97.2 7.6 151 14-204 359-522 (574)
252 PRK14239 phosphate transporter 98.6 3.5E-08 7.5E-13 88.2 5.6 160 14-204 24-195 (252)
253 PRK14253 phosphate ABC transpo 98.6 3.7E-08 7.9E-13 87.9 5.7 159 14-204 22-192 (249)
254 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.6 4E-08 8.6E-13 86.5 5.9 145 14-203 41-188 (224)
255 PRK14275 phosphate ABC transpo 98.6 2.6E-08 5.6E-13 91.0 4.8 161 14-205 58-230 (286)
256 PRK14260 phosphate ABC transpo 98.6 2.9E-08 6.3E-13 89.2 5.0 160 14-204 26-197 (259)
257 PRK13636 cbiO cobalt transport 98.6 1E-08 2.2E-13 93.4 2.1 158 14-203 25-187 (283)
258 KOG0731|consensus 98.6 3.6E-09 7.8E-14 106.0 -1.0 53 207-262 308-361 (774)
259 PRK14271 phosphate ABC transpo 98.6 4.4E-08 9.5E-13 89.0 6.1 159 14-204 40-210 (276)
260 TIGR02324 CP_lyasePhnL phospho 98.6 3E-08 6.4E-13 87.1 4.8 161 14-204 27-196 (224)
261 PRK14245 phosphate ABC transpo 98.6 4.3E-08 9.2E-13 87.6 5.9 159 14-204 22-193 (250)
262 PRK11247 ssuB aliphatic sulfon 98.6 3.1E-08 6.8E-13 89.1 5.0 145 14-203 31-179 (257)
263 PRK10418 nikD nickel transport 98.6 1.6E-08 3.6E-13 90.6 3.2 152 14-203 22-186 (254)
264 PRK11701 phnK phosphonate C-P 98.6 3.2E-08 6.9E-13 88.9 5.0 161 14-203 25-197 (258)
265 COG4598 HisP ABC-type histidin 98.6 1.8E-07 3.9E-12 78.6 9.0 132 14-152 25-168 (256)
266 PRK14268 phosphate ABC transpo 98.6 3E-08 6.6E-13 89.0 4.8 157 14-204 31-201 (258)
267 PRK13631 cbiO cobalt transport 98.6 2.3E-08 5.1E-13 92.7 4.1 163 14-203 45-222 (320)
268 PRK11300 livG leucine/isoleuci 98.6 2.7E-08 5.8E-13 89.1 4.3 160 14-203 24-199 (255)
269 TIGR02204 MsbA_rel ABC transpo 98.6 1.1E-07 2.5E-12 94.8 9.2 152 14-205 359-524 (576)
270 PRK13541 cytochrome c biogenes 98.6 2.2E-08 4.9E-13 86.1 3.6 146 14-202 19-168 (195)
271 cd03267 ABC_NatA_like Similar 98.6 1.7E-08 3.6E-13 89.6 2.8 155 14-203 40-199 (236)
272 PRK10619 histidine/lysine/argi 98.6 2.6E-08 5.7E-13 89.4 4.1 165 14-204 24-199 (257)
273 COG4167 SapF ABC-type antimicr 98.6 2.6E-08 5.7E-13 83.8 3.8 130 14-152 32-165 (267)
274 cd03248 ABCC_TAP TAP, the Tran 98.6 1.9E-08 4E-13 88.5 2.9 158 14-204 33-197 (226)
275 PRK14243 phosphate transporter 98.6 5.8E-08 1.3E-12 87.6 6.1 158 14-204 29-198 (264)
276 PRK13539 cytochrome c biogenes 98.6 4.7E-08 1E-12 85.0 5.3 149 14-203 21-173 (207)
277 PRK14236 phosphate transporter 98.6 4.1E-08 8.9E-13 89.0 5.1 160 14-204 44-215 (272)
278 PRK14261 phosphate ABC transpo 98.6 3.1E-08 6.6E-13 88.7 4.2 160 14-204 25-196 (253)
279 PRK14265 phosphate ABC transpo 98.6 5.6E-08 1.2E-12 88.2 5.8 158 14-204 39-208 (274)
280 PRK13540 cytochrome c biogenes 98.6 4.6E-08 9.9E-13 84.5 4.9 150 14-203 20-173 (200)
281 cd03252 ABCC_Hemolysin The ABC 98.6 3E-08 6.6E-13 87.8 3.8 44 14-57 21-66 (237)
282 PRK14248 phosphate ABC transpo 98.6 5.2E-08 1.1E-12 88.1 5.4 160 14-204 40-211 (268)
283 TIGR02857 CydD thiol reductant 98.6 9.8E-08 2.1E-12 94.3 7.7 151 14-204 341-505 (529)
284 PRK14262 phosphate ABC transpo 98.6 6.1E-08 1.3E-12 86.6 5.6 158 14-204 22-193 (250)
285 PRK14266 phosphate ABC transpo 98.6 7.8E-08 1.7E-12 85.9 6.2 160 14-204 22-193 (250)
286 PRK13645 cbiO cobalt transport 98.6 6.8E-08 1.5E-12 88.3 5.9 161 14-203 30-196 (289)
287 PRK14263 phosphate ABC transpo 98.6 6E-08 1.3E-12 87.4 5.4 158 14-204 27-196 (261)
288 PRK14257 phosphate ABC transpo 98.6 4.9E-08 1.1E-12 90.9 5.0 157 14-204 101-272 (329)
289 PRK14259 phosphate ABC transpo 98.6 6E-08 1.3E-12 87.8 5.4 157 14-204 32-201 (269)
290 TIGR03740 galliderm_ABC gallid 98.6 5.1E-08 1.1E-12 85.6 4.8 149 14-204 19-171 (223)
291 PRK15134 microcin C ABC transp 98.6 4.6E-08 1E-12 96.7 4.9 162 14-204 305-472 (529)
292 PLN03211 ABC transporter G-25; 98.6 3.9E-08 8.4E-13 99.5 4.3 154 14-203 87-252 (659)
293 PRK11614 livF leucine/isoleuci 98.6 4.3E-08 9.3E-13 86.9 4.1 156 14-204 24-184 (237)
294 PRK14249 phosphate ABC transpo 98.6 6.2E-08 1.3E-12 86.6 5.1 157 14-204 23-194 (251)
295 COG2274 SunT ABC-type bacterio 98.6 9.6E-08 2.1E-12 96.8 7.0 150 14-204 492-656 (709)
296 PRK13549 xylose transporter AT 98.6 2.6E-08 5.7E-13 97.9 2.8 159 14-203 24-189 (506)
297 COG1119 ModF ABC-type molybden 98.6 6.7E-08 1.5E-12 84.8 4.9 158 14-203 50-217 (257)
298 cd03246 ABCC_Protease_Secretio 98.6 5.5E-08 1.2E-12 82.1 4.3 44 14-57 21-66 (173)
299 COG4525 TauB ABC-type taurine 98.6 6.1E-08 1.3E-12 82.5 4.5 150 14-203 24-178 (259)
300 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.6 1.1E-07 2.4E-12 84.2 6.5 44 14-57 22-67 (238)
301 PTZ00265 multidrug resistance 98.6 1.4E-07 3.1E-12 102.9 8.5 34 14-47 1187-1220(1466)
302 COG1132 MdlB ABC-type multidru 98.6 3E-08 6.5E-13 98.8 3.1 47 14-60 348-396 (567)
303 CHL00176 ftsH cell division pr 98.6 1.4E-08 3E-13 102.0 0.7 56 204-262 177-233 (638)
304 TIGR03771 anch_rpt_ABC anchore 98.6 9E-08 1.9E-12 84.2 5.7 153 16-204 1-160 (223)
305 PRK13657 cyclic beta-1,2-gluca 98.6 5.3E-08 1.1E-12 97.5 4.7 151 14-205 354-519 (588)
306 PRK13639 cbiO cobalt transport 98.6 2.8E-08 6.1E-13 90.2 2.5 159 14-204 21-184 (275)
307 cd03251 ABCC_MsbA MsbA is an e 98.6 3E-08 6.5E-13 87.6 2.6 44 14-57 21-66 (234)
308 PRK10762 D-ribose transporter 98.6 1.8E-08 4E-13 98.9 1.3 159 14-203 23-187 (501)
309 PRK09580 sufC cysteine desulfu 98.6 3.4E-08 7.4E-13 88.0 2.9 44 14-57 20-67 (248)
310 CHL00131 ycf16 sulfate ABC tra 98.6 5.5E-08 1.2E-12 86.9 4.3 161 14-204 26-198 (252)
311 COG1223 Predicted ATPase (AAA+ 98.6 2E-08 4.3E-13 88.7 1.3 57 201-262 112-168 (368)
312 PRK14255 phosphate ABC transpo 98.6 7.3E-08 1.6E-12 86.1 5.0 159 14-204 24-195 (252)
313 PRK10419 nikE nickel transport 98.6 6.6E-08 1.4E-12 87.5 4.6 161 14-204 31-198 (268)
314 PRK14238 phosphate transporter 98.5 1E-07 2.2E-12 86.3 5.8 160 14-204 43-214 (271)
315 TIGR03345 VI_ClpV1 type VI sec 98.5 7.8E-07 1.7E-11 92.4 13.0 60 19-78 206-277 (852)
316 TIGR01193 bacteriocin_ABC ABC- 98.5 1.6E-07 3.4E-12 96.1 7.8 151 14-204 493-658 (708)
317 cd03237 ABC_RNaseL_inhibitor_d 98.5 6E-08 1.3E-12 86.7 4.1 137 17-203 21-161 (246)
318 COG4148 ModC ABC-type molybdat 98.5 5.3E-08 1.1E-12 86.9 3.6 152 14-204 17-175 (352)
319 TIGR00968 3a0106s01 sulfate AB 98.5 6.6E-08 1.4E-12 85.8 4.2 154 14-203 19-176 (237)
320 PRK13543 cytochrome c biogenes 98.5 5.7E-08 1.2E-12 84.8 3.7 150 14-203 30-183 (214)
321 COG4618 ArpD ABC-type protease 98.5 7.4E-08 1.6E-12 92.1 4.7 46 14-59 355-402 (580)
322 PRK14246 phosphate ABC transpo 98.5 8.1E-08 1.7E-12 86.4 4.8 161 14-204 29-200 (257)
323 PRK09700 D-allose transporter 98.5 3.2E-08 7E-13 97.4 2.4 159 14-203 24-191 (510)
324 PRK14272 phosphate ABC transpo 98.5 8.4E-08 1.8E-12 85.7 4.8 160 14-204 23-195 (252)
325 TIGR03269 met_CoM_red_A2 methy 98.5 8.4E-08 1.8E-12 94.7 5.2 40 14-53 19-62 (520)
326 PRK10789 putative multidrug tr 98.5 2E-07 4.4E-12 93.0 7.8 151 14-204 334-498 (569)
327 PRK10261 glutathione transport 98.5 4.8E-08 1E-12 98.5 3.3 136 14-153 35-185 (623)
328 PRK09700 D-allose transporter 98.5 4.4E-08 9.6E-13 96.4 2.9 160 14-204 282-456 (510)
329 COG4172 ABC-type uncharacteriz 98.5 6.8E-08 1.5E-12 90.1 3.8 134 13-152 28-173 (534)
330 PRK15056 manganese/iron transp 98.5 8.2E-08 1.8E-12 87.0 4.3 155 14-204 26-189 (272)
331 PRK14264 phosphate ABC transpo 98.5 1.4E-07 3.1E-12 86.9 5.9 163 14-205 64-248 (305)
332 PRK15439 autoinducer 2 ABC tra 98.5 5.2E-08 1.1E-12 96.0 2.9 153 14-203 30-186 (510)
333 TIGR02633 xylG D-xylose ABC tr 98.5 4.8E-08 1E-12 95.9 2.6 159 14-203 20-187 (500)
334 PRK09544 znuC high-affinity zi 98.5 1.5E-07 3.2E-12 84.4 5.4 141 14-203 23-166 (251)
335 cd03247 ABCC_cytochrome_bd The 98.5 2.1E-07 4.5E-12 78.9 6.1 43 14-56 21-65 (178)
336 PRK14252 phosphate ABC transpo 98.5 1.7E-07 3.7E-12 84.5 5.8 162 14-204 35-208 (265)
337 TIGR01846 type_I_sec_HlyB type 98.5 2.3E-07 5.1E-12 94.6 7.5 151 14-205 476-641 (694)
338 cd03253 ABCC_ATM1_transporter 98.5 7.7E-08 1.7E-12 85.1 3.4 44 14-57 20-65 (236)
339 cd03228 ABCC_MRP_Like The MRP 98.5 1.3E-07 2.8E-12 79.7 4.6 43 14-56 21-65 (171)
340 cd03233 ABC_PDR_domain1 The pl 98.5 7.4E-08 1.6E-12 83.4 2.9 134 14-204 26-165 (202)
341 TIGR00955 3a01204 The Eye Pigm 98.5 1.2E-07 2.7E-12 95.4 4.7 155 14-203 44-212 (617)
342 TIGR00958 3a01208 Conjugate Tr 98.5 2.5E-07 5.5E-12 94.6 6.8 46 14-59 500-547 (711)
343 TIGR01842 type_I_sec_PrtD type 98.5 8.9E-08 1.9E-12 95.0 3.2 45 14-58 337-383 (544)
344 cd03217 ABC_FeS_Assembly ABC-t 98.5 1.7E-07 3.6E-12 81.1 4.4 44 14-57 19-66 (200)
345 cd03216 ABC_Carb_Monos_I This 98.5 4.6E-08 1E-12 81.9 0.8 43 14-56 19-63 (163)
346 KOG0057|consensus 98.5 4.9E-07 1.1E-11 87.2 7.9 47 14-60 371-418 (591)
347 cd03288 ABCC_SUR2 The SUR doma 98.4 3.4E-07 7.3E-12 82.2 6.4 44 14-57 40-85 (257)
348 TIGR01257 rim_protein retinal- 98.4 1E-07 2.2E-12 105.8 3.5 154 14-204 1958-2117(2272)
349 cd03369 ABCC_NFT1 Domain 2 of 98.4 2.9E-07 6.2E-12 79.9 5.8 144 14-204 27-172 (207)
350 TIGR01194 cyc_pep_trnsptr cycl 98.4 1.6E-07 3.4E-12 93.5 4.4 144 14-200 361-513 (555)
351 PF00005 ABC_tran: ABC transpo 98.4 5E-08 1.1E-12 78.7 0.7 45 14-58 4-50 (137)
352 PRK13549 xylose transporter AT 98.4 1.5E-07 3.3E-12 92.5 4.3 161 14-204 281-452 (506)
353 cd03290 ABCC_SUR1_N The SUR do 98.4 3.6E-07 7.9E-12 79.9 6.2 44 14-57 20-65 (218)
354 PRK10982 galactose/methyl gala 98.4 8E-08 1.7E-12 94.2 2.2 160 14-203 17-180 (491)
355 PRK10636 putative ABC transpor 98.4 2.9E-07 6.3E-12 93.0 6.2 166 14-204 20-196 (638)
356 PRK10938 putative molybdenum t 98.4 2.4E-07 5.1E-12 90.8 5.4 162 14-204 279-448 (490)
357 PRK11288 araG L-arabinose tran 98.4 7.2E-08 1.6E-12 94.7 1.7 160 14-203 23-186 (501)
358 PRK15439 autoinducer 2 ABC tra 98.4 1E-07 2.2E-12 93.9 2.6 161 14-204 282-450 (510)
359 PRK13409 putative ATPase RIL; 98.4 4.3E-07 9.3E-12 90.9 6.7 125 17-152 95-228 (590)
360 PRK10762 D-ribose transporter 98.4 1.3E-07 2.8E-12 93.0 2.9 161 14-204 271-442 (501)
361 PRK14258 phosphate ABC transpo 98.4 2.8E-07 6.1E-12 83.0 4.8 157 14-203 26-196 (261)
362 cd03232 ABC_PDR_domain2 The pl 98.4 2.9E-07 6.3E-12 79.1 4.7 44 14-57 26-73 (192)
363 COG4988 CydD ABC-type transpor 98.4 4.3E-07 9.2E-12 88.4 6.3 151 14-204 340-503 (559)
364 PLN03130 ABC transporter C fam 98.4 4.9E-07 1.1E-11 99.6 7.5 150 14-204 1258-1421(1622)
365 TIGR01192 chvA glucan exporter 98.4 3.9E-07 8.4E-12 91.3 6.2 151 14-205 354-519 (585)
366 TIGR01257 rim_protein retinal- 98.4 2.1E-07 4.6E-12 103.2 4.4 154 14-204 949-1108(2272)
367 COG4586 ABC-type uncharacteriz 98.4 7.4E-07 1.6E-11 79.5 6.9 153 14-204 43-203 (325)
368 PRK10535 macrolide transporter 98.4 2.9E-07 6.3E-12 93.2 5.0 161 14-204 27-191 (648)
369 KOG0055|consensus 98.4 3.7E-07 8.1E-12 95.5 5.7 47 14-60 372-420 (1228)
370 TIGR02881 spore_V_K stage V sp 98.4 4.7E-07 1E-11 81.6 5.7 57 21-77 42-105 (261)
371 cd03229 ABC_Class3 This class 98.4 2.3E-07 4.9E-12 78.7 3.5 44 14-57 19-64 (178)
372 TIGR02880 cbbX_cfxQ probable R 98.4 2.3E-07 5E-12 84.7 3.7 70 8-77 42-121 (284)
373 PRK13546 teichoic acids export 98.4 2.7E-07 5.8E-12 83.4 4.0 41 14-54 43-85 (264)
374 TIGR00390 hslU ATP-dependent p 98.4 5.2E-07 1.1E-11 85.6 6.1 59 20-78 46-106 (441)
375 PLN03140 ABC transporter G fam 98.4 3.4E-07 7.3E-12 99.8 5.4 155 14-203 899-1065(1470)
376 TIGR03269 met_CoM_red_A2 methy 98.4 2.5E-07 5.5E-12 91.3 4.1 161 14-203 303-473 (520)
377 PRK13545 tagH teichoic acids e 98.4 3.9E-07 8.4E-12 89.0 5.2 144 14-203 43-189 (549)
378 PRK10522 multidrug transporter 98.4 2.3E-07 5E-12 92.2 3.7 45 14-58 342-388 (547)
379 cd03238 ABC_UvrA The excision 98.4 4.1E-07 9E-12 77.2 4.8 30 14-43 14-43 (176)
380 PRK11288 araG L-arabinose tran 98.4 1.4E-07 3E-12 92.8 2.1 161 14-204 272-443 (501)
381 cd03230 ABC_DR_subfamily_A Thi 98.4 3.5E-07 7.6E-12 77.2 4.3 44 14-57 19-64 (173)
382 COG0488 Uup ATPase components 98.4 8.9E-07 1.9E-11 87.1 7.5 134 14-153 22-170 (530)
383 cd03236 ABC_RNaseL_inhibitor_d 98.4 7.7E-07 1.7E-11 80.0 6.4 154 18-203 23-185 (255)
384 cd03213 ABCG_EPDR ABCG transpo 98.4 4.3E-07 9.4E-12 78.1 4.6 44 14-57 28-75 (194)
385 COG4170 SapD ABC-type antimicr 98.4 4.5E-07 9.8E-12 78.0 4.5 184 14-222 26-229 (330)
386 PRK15064 ABC transporter ATP-b 98.4 3.3E-07 7.2E-12 90.7 4.3 144 14-204 338-485 (530)
387 TIGR00956 3a01205 Pleiotropic 98.3 3.6E-07 7.7E-12 99.6 4.8 156 14-203 782-948 (1394)
388 PLN03232 ABC transporter C fam 98.3 4.3E-07 9.3E-12 99.7 5.4 150 14-204 1255-1418(1495)
389 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.3 5.9E-07 1.3E-11 73.7 4.9 35 14-48 19-53 (144)
390 PLN03073 ABC transporter F fam 98.3 1.3E-06 2.7E-11 89.3 8.3 71 113-204 319-391 (718)
391 cd03223 ABCD_peroxisomal_ALDP 98.3 5.4E-07 1.2E-11 75.6 4.7 35 14-48 20-54 (166)
392 PRK13409 putative ATPase RIL; 98.3 3.3E-07 7.1E-12 91.8 3.9 140 14-203 358-499 (590)
393 COG4178 ABC-type uncharacteriz 98.3 2E-06 4.4E-11 84.9 9.3 146 14-206 412-564 (604)
394 PRK10636 putative ABC transpor 98.3 8E-07 1.7E-11 89.9 6.7 143 14-204 331-477 (638)
395 COG4161 ArtP ABC-type arginine 98.3 2.5E-06 5.3E-11 70.7 8.3 133 14-153 21-158 (242)
396 COG0488 Uup ATPase components 98.3 6.5E-07 1.4E-11 88.1 5.7 144 14-206 341-488 (530)
397 cd03215 ABC_Carb_Monos_II This 98.3 3.5E-07 7.7E-12 77.8 3.4 44 14-57 19-64 (182)
398 PRK11147 ABC transporter ATPas 98.3 1E-06 2.3E-11 89.0 7.2 41 14-54 22-64 (635)
399 TIGR00954 3a01203 Peroxysomal 98.3 9.6E-07 2.1E-11 89.6 6.9 146 14-203 471-628 (659)
400 TIGR00957 MRP_assoc_pro multi 98.3 1.1E-06 2.4E-11 96.7 7.7 150 14-204 1305-1468(1522)
401 TIGR02633 xylG D-xylose ABC tr 98.3 4.8E-07 1E-11 88.9 4.4 159 14-203 279-449 (500)
402 PTZ00243 ABC transporter; Prov 98.3 1.1E-06 2.4E-11 96.7 7.5 151 14-204 1329-1493(1560)
403 TIGR01271 CFTR_protein cystic 98.3 9E-07 1.9E-11 97.1 6.7 151 14-205 1238-1401(1490)
404 PRK11147 ABC transporter ATPas 98.3 9.4E-07 2E-11 89.3 6.4 146 14-204 338-487 (635)
405 COG1245 Predicted ATPase, RNas 98.3 1.2E-06 2.6E-11 83.0 6.5 124 19-152 98-229 (591)
406 COG1101 PhnK ABC-type uncharac 98.3 1.8E-06 3.9E-11 74.6 7.0 64 14-77 25-90 (263)
407 TIGR01187 potA spermidine/putr 98.3 2.7E-07 5.9E-12 85.8 1.8 142 26-203 1-146 (325)
408 cd03222 ABC_RNaseL_inhibitor T 98.3 8.5E-07 1.8E-11 75.3 4.5 34 16-49 20-53 (177)
409 TIGR02881 spore_V_K stage V sp 98.3 8E-08 1.7E-12 86.5 -2.0 51 210-262 6-59 (261)
410 COG0465 HflB ATP-dependent Zn 98.3 2.7E-07 5.9E-12 90.9 1.5 56 204-262 144-200 (596)
411 PRK15064 ABC transporter ATP-b 98.3 1.6E-06 3.5E-11 85.8 6.9 41 14-54 20-62 (530)
412 PRK11819 putative ABC transpor 98.3 9.9E-07 2.1E-11 87.8 5.4 144 14-204 343-492 (556)
413 PRK10982 galactose/methyl gala 98.3 3.7E-07 8.1E-12 89.5 2.2 161 14-204 267-438 (491)
414 PTZ00265 multidrug resistance 98.2 1.9E-06 4.2E-11 94.2 7.6 44 14-57 404-450 (1466)
415 TIGR03719 ABC_ABC_ChvD ATP-bin 98.2 1.2E-06 2.5E-11 87.3 5.3 144 14-204 341-490 (552)
416 PRK11819 putative ABC transpor 98.2 5.4E-07 1.2E-11 89.7 2.9 34 14-47 26-59 (556)
417 PRK05201 hslU ATP-dependent pr 98.2 2.2E-06 4.7E-11 81.5 6.4 58 21-78 50-109 (443)
418 COG4133 CcmA ABC-type transpor 98.2 1.9E-06 4E-11 73.0 5.2 39 14-52 21-59 (209)
419 KOG0055|consensus 98.2 2.5E-06 5.4E-11 89.5 7.2 47 14-60 1009-1057(1228)
420 cd00267 ABC_ATPase ABC (ATP-bi 98.2 5.8E-07 1.3E-11 74.5 2.1 42 14-55 18-61 (157)
421 KOG0056|consensus 98.2 1.5E-06 3.3E-11 82.9 5.0 46 14-59 557-604 (790)
422 CHL00181 cbbX CbbX; Provisiona 98.2 1E-07 2.2E-12 87.1 -2.8 60 194-261 12-75 (287)
423 KOG0060|consensus 98.2 1.7E-06 3.7E-11 84.0 5.3 122 14-153 454-587 (659)
424 KOG0058|consensus 98.2 2.4E-06 5.2E-11 85.0 6.2 47 14-60 487-535 (716)
425 PLN03073 ABC transporter F fam 98.2 1.3E-06 2.9E-11 89.2 4.6 143 14-204 528-674 (718)
426 TIGR00956 3a01205 Pleiotropic 98.2 5.2E-07 1.1E-11 98.3 1.3 157 14-203 80-255 (1394)
427 CHL00181 cbbX CbbX; Provisiona 98.2 2.2E-06 4.7E-11 78.4 5.2 68 10-77 45-122 (287)
428 COG4136 ABC-type uncharacteriz 98.2 1.2E-06 2.6E-11 71.7 3.0 129 14-157 21-155 (213)
429 COG4107 PhnK ABC-type phosphon 98.1 1.9E-06 4E-11 72.3 3.6 37 14-50 25-61 (258)
430 KOG0927|consensus 98.1 1.1E-05 2.4E-10 77.9 9.1 131 14-150 94-235 (614)
431 TIGR03719 ABC_ABC_ChvD ATP-bin 98.1 2.4E-06 5.2E-11 85.0 4.6 40 14-53 24-65 (552)
432 TIGR02880 cbbX_cfxQ probable R 98.1 3E-07 6.6E-12 83.9 -2.0 50 210-262 22-75 (284)
433 PF05496 RuvB_N: Holliday junc 98.1 2.3E-06 5E-11 74.8 3.5 36 21-56 50-85 (233)
434 KOG0061|consensus 98.1 1.5E-06 3.4E-11 87.2 2.7 150 14-203 49-216 (613)
435 COG2256 MGS1 ATPase related to 98.1 6.4E-06 1.4E-10 77.1 6.1 51 21-78 48-98 (436)
436 cd03271 ABC_UvrA_II The excisi 98.1 2.1E-05 4.4E-10 71.0 9.1 170 14-204 14-219 (261)
437 COG1245 Predicted ATPase, RNas 98.0 1.2E-05 2.6E-10 76.4 7.4 100 18-152 364-471 (591)
438 COG1134 TagH ABC-type polysacc 98.0 7.2E-06 1.6E-10 72.1 4.8 40 14-53 46-85 (249)
439 KOG0743|consensus 98.0 4.5E-06 9.8E-11 79.1 3.4 47 8-54 222-268 (457)
440 cd00820 PEPCK_HprK Phosphoenol 98.0 5.1E-06 1.1E-10 64.5 3.1 41 14-58 8-48 (107)
441 KOG0064|consensus 98.0 9.2E-06 2E-10 78.3 5.2 32 15-46 502-533 (728)
442 PRK15177 Vi polysaccharide exp 98.0 5.3E-06 1.2E-10 72.4 3.2 37 14-50 6-42 (213)
443 COG1129 MglA ABC-type sugar tr 98.0 1.6E-06 3.4E-11 84.0 -0.3 44 14-57 27-72 (500)
444 KOG0059|consensus 97.9 4.7E-06 1E-10 87.2 3.0 158 13-205 583-746 (885)
445 KOG0989|consensus 97.9 6.1E-06 1.3E-10 74.7 3.3 47 200-261 27-73 (346)
446 COG4674 Uncharacterized ABC-ty 97.9 3.7E-06 8E-11 71.7 1.8 123 14-147 24-158 (249)
447 PRK00411 cdc6 cell division co 97.9 6.2E-05 1.4E-09 71.5 10.2 37 20-56 54-95 (394)
448 COG4152 ABC-type uncharacteriz 97.9 1E-05 2.2E-10 71.2 4.0 152 14-205 21-178 (300)
449 PF13207 AAA_17: AAA domain; P 97.9 8.5E-06 1.8E-10 64.1 3.2 32 23-54 1-32 (121)
450 PF09336 Vps4_C: Vps4 C termin 97.9 1E-05 2.2E-10 56.5 3.2 36 187-222 26-61 (62)
451 smart00382 AAA ATPases associa 97.9 1.4E-05 3E-10 62.9 4.1 37 21-57 2-41 (148)
452 cd03250 ABCC_MRP_domain1 Domai 97.9 9.7E-06 2.1E-10 70.1 3.2 41 14-54 24-66 (204)
453 PRK08118 topology modulation p 97.8 3.7E-05 8.1E-10 64.6 6.0 32 23-54 3-34 (167)
454 TIGR00362 DnaA chromosomal rep 97.8 0.00027 5.8E-09 67.7 12.0 38 22-59 137-179 (405)
455 PLN03130 ABC transporter C fam 97.8 3.6E-05 7.8E-10 85.2 6.7 36 14-49 636-671 (1622)
456 COG4138 BtuD ABC-type cobalami 97.8 5.4E-05 1.2E-09 63.7 6.1 45 15-59 19-64 (248)
457 PF07728 AAA_5: AAA domain (dy 97.8 1.9E-05 4.1E-10 63.9 3.4 34 23-56 1-34 (139)
458 cd00009 AAA The AAA+ (ATPases 97.7 3.4E-05 7.5E-10 61.3 4.3 40 19-58 17-59 (151)
459 COG1224 TIP49 DNA helicase TIP 97.7 4E-05 8.7E-10 70.8 5.1 57 19-76 63-121 (450)
460 PF06068 TIP49: TIP49 C-termin 97.7 3.7E-05 8E-10 71.7 4.7 54 20-74 49-104 (398)
461 TIGR00957 MRP_assoc_pro multi 97.7 3.6E-05 7.8E-10 85.0 5.4 40 14-53 657-698 (1522)
462 cd03291 ABCC_CFTR1 The CFTR su 97.7 2.3E-05 5E-10 71.5 3.1 41 14-54 56-98 (282)
463 PRK00131 aroK shikimate kinase 97.7 4.2E-05 9.1E-10 63.8 4.4 35 19-53 2-36 (175)
464 TIGR03238 dnd_assoc_3 dnd syst 97.7 2.7E-05 5.8E-10 75.1 3.4 62 14-76 25-87 (504)
465 PRK07261 topology modulation p 97.7 9.1E-05 2E-09 62.5 5.9 34 23-56 2-35 (171)
466 PRK05342 clpX ATP-dependent pr 97.7 5.3E-05 1.2E-09 72.6 5.0 46 20-65 107-153 (412)
467 KOG0062|consensus 97.6 0.00014 3.1E-09 70.1 7.5 29 15-43 100-128 (582)
468 COG3845 ABC-type uncharacteriz 97.6 2.4E-05 5.3E-10 74.9 2.2 46 13-58 22-69 (501)
469 TIGR01271 CFTR_protein cystic 97.6 5.7E-05 1.2E-09 83.2 5.2 41 14-54 445-487 (1490)
470 cd03283 ABC_MutS-like MutS-lik 97.6 4.1E-05 8.8E-10 66.3 3.3 34 12-45 16-49 (199)
471 PRK14086 dnaA chromosomal repl 97.6 0.00078 1.7E-08 67.2 12.6 38 23-60 316-358 (617)
472 smart00763 AAA_PrkA PrkA AAA d 97.6 7.8E-05 1.7E-09 69.8 5.2 54 20-73 77-141 (361)
473 TIGR02640 gas_vesic_GvpN gas v 97.6 5E-05 1.1E-09 68.5 3.6 37 19-55 19-55 (262)
474 COG2255 RuvB Holliday junction 97.6 5.9E-05 1.3E-09 67.8 3.9 38 20-57 51-88 (332)
475 TIGR00763 lon ATP-dependent pr 97.6 8.2E-05 1.8E-09 77.0 5.3 57 20-76 346-411 (775)
476 TIGR01650 PD_CobS cobaltochela 97.6 4.8E-05 1E-09 70.3 3.1 40 18-57 61-100 (327)
477 COG5265 ATM1 ABC-type transpor 97.5 0.00011 2.3E-09 69.4 5.2 47 14-60 282-330 (497)
478 PF07724 AAA_2: AAA domain (Cd 97.5 7.7E-05 1.7E-09 63.0 3.9 40 20-59 2-45 (171)
479 PRK10078 ribose 1,5-bisphospho 97.5 7.3E-05 1.6E-09 63.8 3.7 29 21-49 2-30 (186)
480 PLN03232 ABC transporter C fam 97.5 5.9E-05 1.3E-09 83.2 3.8 35 14-48 636-670 (1495)
481 PRK06762 hypothetical protein; 97.5 9.7E-05 2.1E-09 61.6 4.2 37 21-57 2-38 (166)
482 PRK04195 replication factor C 97.5 8.5E-05 1.8E-09 72.8 4.3 37 21-57 39-75 (482)
483 PRK13949 shikimate kinase; Pro 97.5 9.8E-05 2.1E-09 62.2 4.1 31 23-53 3-33 (169)
484 TIGR00382 clpX endopeptidase C 97.5 0.00016 3.4E-09 69.2 5.8 45 21-65 116-161 (413)
485 PRK10733 hflB ATP-dependent me 97.5 2.9E-05 6.4E-10 78.6 0.7 54 206-262 148-202 (644)
486 PRK07940 DNA polymerase III su 97.5 4.1E-05 8.8E-10 73.0 1.6 51 208-262 3-53 (394)
487 KOG0927|consensus 97.5 0.0004 8.7E-09 67.4 8.2 147 14-205 409-557 (614)
488 PRK03839 putative kinase; Prov 97.5 9.7E-05 2.1E-09 62.5 3.6 31 23-53 2-32 (180)
489 cd00227 CPT Chloramphenicol (C 97.5 0.00013 2.9E-09 61.5 4.4 33 21-53 2-34 (175)
490 PF13671 AAA_33: AAA domain; P 97.5 6.6E-05 1.4E-09 60.6 2.4 23 24-46 2-24 (143)
491 COG0703 AroK Shikimate kinase 97.5 0.00014 3E-09 61.2 4.3 53 22-79 3-55 (172)
492 cd03278 ABC_SMC_barmotin Barmo 97.5 0.0001 2.3E-09 63.6 3.6 33 14-47 16-48 (197)
493 TIGR03420 DnaA_homol_Hda DnaA 97.5 0.00012 2.6E-09 64.0 4.0 40 19-58 36-78 (226)
494 PRK06217 hypothetical protein; 97.4 0.00012 2.6E-09 62.3 3.8 31 23-53 3-33 (183)
495 PRK09825 idnK D-gluconate kina 97.4 0.00014 3E-09 61.7 4.2 36 20-57 2-37 (176)
496 PRK00080 ruvB Holliday junctio 97.4 0.00012 2.7E-09 68.0 4.1 35 20-54 50-84 (328)
497 PF03215 Rad17: Rad17 cell cyc 97.4 0.00014 3E-09 71.7 4.5 34 19-52 43-76 (519)
498 cd01130 VirB11-like_ATPase Typ 97.4 9.1E-05 2E-09 63.2 2.9 35 13-47 17-51 (186)
499 COG4615 PvdE ABC-type sideroph 97.4 0.00015 3.3E-09 68.0 4.5 61 14-78 342-404 (546)
500 PF13173 AAA_14: AAA domain 97.4 0.00016 3.5E-09 57.8 3.9 37 21-57 2-40 (128)
No 1
>KOG0733|consensus
Probab=100.00 E-value=4.1e-47 Score=360.47 Aligned_cols=265 Identities=29% Similarity=0.419 Sum_probs=209.8
Q ss_pred CcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-------
Q psy13773 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME------- 79 (299)
Q Consensus 7 l~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~------- 79 (299)
+++|+.|.++++.|+++||||||||||||+|+++||++++.+++.|...++++.+.|+++++++++|+.|...
T Consensus 209 i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFi 288 (802)
T KOG0733|consen 209 IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFI 288 (802)
T ss_pred hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEe
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ----HHhhhhcCCCchhhh----HHHhhc---------------------CccchhhcCC-----------CccHHHHHh
Q psy13773 80 ----NFRYAMGKSSPSALR----ETIVEV---------------------PNITWEDIGG-----------LEGVKRELQ 119 (299)
Q Consensus 80 ----~~~~~~~~~~~~~~~----~~l~~l---------------------~~~l~~~~~r-----------~p~~~~R~~ 119 (299)
++.+.|........+ ++++.| |+.++++++| .|++.+|.+
T Consensus 289 DeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~ 368 (802)
T KOG0733|consen 289 DEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREE 368 (802)
T ss_pred ecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHH
Confidence 445555443333333 333322 8888888866 688888876
Q ss_pred ---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--------------H--hcCCc
Q psy13773 120 ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIR-RERE--------------K--LAGNP 173 (299)
Q Consensus 120 ---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~-~~~~--------------~--~~~~~ 173 (299)
.+..++++..||+.|+||+|+||++||.+|+..|++|..+...+ .... + +....
T Consensus 369 IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~ 448 (802)
T KOG0733|consen 369 ILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITS 448 (802)
T ss_pred HHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCC
Confidence 34568899999999999999999999999999999998753221 0000 0 00000
Q ss_pred cccccccc-----------CC----CCCCcccccHHHHHHHHHhccCC-----------CCHHHHHHHHHHHHHHHHhhc
Q psy13773 174 AASAAMET-----------ED----EDDPVPEITRAHFEEAMRFARRS-----------VNDADIRKYEMFAQTLQQSRG 227 (299)
Q Consensus 174 ~~~~~~~~-----------~~----~~~~~~~it~~Df~~AL~~~~Ps-----------Vsw~DIggL~~vk~~i~~ti~ 227 (299)
+.+..++. .+ +......|+.+||++|+..+||+ |+|+|||+|++++.+|...|.
T Consensus 449 ~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~ 528 (802)
T KOG0733|consen 449 NAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAIL 528 (802)
T ss_pred cccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHh
Confidence 11100111 01 22233468999999999999976 999999999999999999999
Q ss_pred CCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeeeccCCCCCCCCCCCCCCCCCCCCCCC
Q psy13773 228 FGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLMFPSNPNQSQSGGPNSAPANESGTGG 287 (299)
Q Consensus 228 ~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (299)
| |.||||+|.. |+.--+|||||||||.|||||- -|-|||+|..=
T Consensus 529 ~--PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlA--------------KAVANEag~NF 573 (802)
T KOG0733|consen 529 A--PIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLA--------------KAVANEAGANF 573 (802)
T ss_pred h--hccCHHHHHHhCCCCCCceEEeCCCCccHHHHH--------------HHHhhhccCce
Confidence 9 9999999864 7888999999999999999985 36677777543
No 2
>KOG0736|consensus
Probab=100.00 E-value=2.7e-44 Score=348.44 Aligned_cols=232 Identities=21% Similarity=0.221 Sum_probs=172.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-----------HHhhhhcC
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-----------NFRYAMGK 87 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-----------~~~~~~~~ 87 (299)
.....+||+|++||||||+++++|.+++.++++++|.++++...+.++..+..+|.+++.+ .+......
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg 508 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG 508 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC
Confidence 3456899999999999999999999999999999999999988888999999999999876 11111111
Q ss_pred CCchhhh---H-HHh-hc----------------Cccchhhc---------CCCccHHHHHh---------hhcccCCHH
Q psy13773 88 SSPSALR---E-TIV-EV----------------PNITWEDI---------GGLEGVKRELQ---------ELVQDVDLN 128 (299)
Q Consensus 88 ~~~~~~~---~-~l~-~l----------------~~~l~~~~---------~r~p~~~~R~~---------~l~~~v~l~ 128 (299)
....... + .+. +. ...+.+.+ ...+++++|.+ .+.+++.++
T Consensus 509 ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k 588 (953)
T KOG0736|consen 509 GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK 588 (953)
T ss_pred chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence 1111111 1 111 11 01111111 11577888876 345677788
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc----
Q psy13773 129 YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR---- 204 (299)
Q Consensus 129 ~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~---- 204 (299)
.+|.+|.|||.+|+.+++..+...+..+..++..-.. .+.+. ....-.....++.+||.+|+.++|
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~-~~~~~---------~~~~~~~~~~l~~edf~kals~~~~~fs 658 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGG-LQEED---------EGELCAAGFLLTEEDFDKALSRLQKEFS 658 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhccccc-chhcc---------ccccccccceecHHHHHHHHHHHHHhhh
Confidence 9999999999999999999986666666544321000 00000 111122336799999999999887
Q ss_pred --------CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 205 --------RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 205 --------PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
|+|+|+|||||+++|++|+|||++ ||||||||++|++||||||||||||||||||-
T Consensus 659 ~aiGAPKIPnV~WdDVGGLeevK~eIldTIql--PL~hpeLfssglrkRSGILLYGPPGTGKTLlA 722 (953)
T KOG0736|consen 659 DAIGAPKIPNVSWDDVGGLEEVKTEILDTIQL--PLKHPELFSSGLRKRSGILLYGPPGTGKTLLA 722 (953)
T ss_pred hhcCCCCCCccchhcccCHHHHHHHHHHHhcC--cccChhhhhccccccceeEEECCCCCchHHHH
Confidence 789999999999999999999999 99999999999999999999999999999973
No 3
>KOG0730|consensus
Probab=100.00 E-value=4.8e-40 Score=315.83 Aligned_cols=225 Identities=32% Similarity=0.500 Sum_probs=188.8
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
+|.+|+.+|.+|.+++++++.++|+|||||+|||.+++++|++.+..++.+++.++++++.|+++.++|..|+.+...
T Consensus 199 ~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~ 278 (693)
T KOG0730|consen 199 LVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQV 278 (693)
T ss_pred HHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred ----------HHhhhhcCCCchhhh---HHHh---hc--------------CccchhhcC--C--------CccHHHHHh
Q psy13773 80 ----------NFRYAMGKSSPSALR---ETIV---EV--------------PNITWEDIG--G--------LEGVKRELQ 119 (299)
Q Consensus 80 ----------~~~~~~~~~~~~~~~---~~l~---~l--------------~~~l~~~~~--r--------~p~~~~R~~ 119 (299)
++++.+........+ +++. .+ ++.++++++ | .|+..+|.+
T Consensus 279 psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~Rld 358 (693)
T KOG0730|consen 279 PSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLD 358 (693)
T ss_pred CeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHH
Confidence 455555444331111 1111 11 677777776 3 677777776
Q ss_pred ---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCccc
Q psy13773 120 ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPE 190 (299)
Q Consensus 120 ---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (299)
....++++..+|..|+||+|+|+..+|.+|++.++++.
T Consensus 359 Il~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~--------------------------------- 405 (693)
T KOG0730|consen 359 ILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRRT--------------------------------- 405 (693)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhh---------------------------------
Confidence 33457889999999999999999999999999998872
Q ss_pred ccHHHHHHHHHhccC-----------CCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCC
Q psy13773 191 ITRAHFEEAMRFARR-----------SVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGG 258 (299)
Q Consensus 191 it~~Df~~AL~~~~P-----------sVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~ 258 (299)
.++|..|+..++| +|+|+|||||+++|++++++|+| |++|||-|.. |+.--.|||||||||+||
T Consensus 406 --~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~--p~~~pe~F~r~Gi~ppkGVLlyGPPGC~K 481 (693)
T KOG0730|consen 406 --LEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEW--PLKHPEKFARFGISPPKGVLLYGPPGCGK 481 (693)
T ss_pred --HHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhh--hhhchHHHHHhcCCCCceEEEECCCCcch
Confidence 4577777777765 49999999999999999999999 9999998876 346667999999999999
Q ss_pred eeeec
Q psy13773 259 ILLMF 263 (299)
Q Consensus 259 ~ll~~ 263 (299)
||+-.
T Consensus 482 T~lAk 486 (693)
T KOG0730|consen 482 TLLAK 486 (693)
T ss_pred HHHHH
Confidence 99865
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=7e-34 Score=289.11 Aligned_cols=248 Identities=31% Similarity=0.498 Sum_probs=188.5
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
.|.+|+.+|++|..+++.++++++|+||||||||+++++||++++..++.+++.++.+.+.++.+..++.+|+.+...
T Consensus 193 ~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p 272 (733)
T TIGR01243 193 MVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAP 272 (733)
T ss_pred HHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred ---------HHhhhhcCCCchh----hhHHHhhc-----------------CccchhhcCC-----------CccHHHHH
Q psy13773 80 ---------NFRYAMGKSSPSA----LRETIVEV-----------------PNITWEDIGG-----------LEGVKREL 118 (299)
Q Consensus 80 ---------~~~~~~~~~~~~~----~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~ 118 (299)
.+...+....... ...++..+ ++.+++++.+ .|+..+|.
T Consensus 273 ~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~ 352 (733)
T TIGR01243 273 SIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARK 352 (733)
T ss_pred cEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHH
Confidence 2222222111111 11111111 3444444422 57777766
Q ss_pred h---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcc
Q psy13773 119 Q---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP 189 (299)
Q Consensus 119 ~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
. .+..++++..++..|+||+++|+..+|+.|++.+++|........ .. ...+ ........
T Consensus 353 ~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~--------~~-~~~i--~~~~~~~~ 421 (733)
T TIGR01243 353 EILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKIN--------FE-AEEI--PAEVLKEL 421 (733)
T ss_pred HHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccc--------cc-cccc--cchhcccc
Confidence 5 233577889999999999999999999999999999876321000 00 0000 00011223
Q ss_pred cccHHHHHHHHHhccCC-----------CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCC
Q psy13773 190 EITRAHFEEAMRFARRS-----------VNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTG 257 (299)
Q Consensus 190 ~it~~Df~~AL~~~~Ps-----------Vsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg 257 (299)
.++.+||..|++.++|+ |+|+||||++++|+.+.+.++| |++||++|.. +++...|+|||||||||
T Consensus 422 ~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~--~~~~~~~~~~~g~~~~~giLL~GppGtG 499 (733)
T TIGR01243 422 KVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEW--PLKHPEIFEKMGIRPPKGVLLFGPPGTG 499 (733)
T ss_pred cccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHh--hhhCHHHHHhcCCCCCceEEEECCCCCC
Confidence 58999999999988865 8999999999999999999999 9999999976 67778899999999999
Q ss_pred Ceeee
Q psy13773 258 GILLM 262 (299)
Q Consensus 258 ~~ll~ 262 (299)
||+|.
T Consensus 500 KT~la 504 (733)
T TIGR01243 500 KTLLA 504 (733)
T ss_pred HHHHH
Confidence 99873
No 5
>KOG0730|consensus
Probab=100.00 E-value=2.1e-32 Score=263.19 Aligned_cols=192 Identities=45% Similarity=0.781 Sum_probs=168.5
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
.|.||+++|+.|..|++.++++||||||||||||+++|++|.+.+.+|+.|.|.++.++|+|++|++++++|++|+..
T Consensus 449 ~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP 528 (693)
T KOG0730|consen 449 AVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAP 528 (693)
T ss_pred HHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred ---------HHhhhhcCCCchhhh----HHHhhc-----------------CccchhhcCC-----------CccHHHHH
Q psy13773 80 ---------NFRYAMGKSSPSALR----ETIVEV-----------------PNITWEDIGG-----------LEGVKREL 118 (299)
Q Consensus 80 ---------~~~~~~~~~~~~~~~----~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~ 118 (299)
+++..|+........ ++|++| |+.+|+++.| +|+.+.|.
T Consensus 529 ~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~ 608 (693)
T KOG0730|consen 529 CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARL 608 (693)
T ss_pred eEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHH
Confidence 566666544332222 455555 7888888855 68888887
Q ss_pred h---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcc
Q psy13773 119 Q---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP 189 (299)
Q Consensus 119 ~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
+ ++.+++|++.||++|+||||+||..||++|++.|+++.++ ..
T Consensus 609 ~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~----------------------------a~ 660 (693)
T KOG0730|consen 609 EILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE----------------------------AT 660 (693)
T ss_pred HHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc----------------------------cc
Confidence 6 5668899999999999999999999999999999998763 24
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q psy13773 190 EITRAHFEEAMRFARRSVNDADIRKYEMFAQT 221 (299)
Q Consensus 190 ~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~ 221 (299)
.|+.+||++|++..+|+++.+++..|+++++.
T Consensus 661 ~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 661 EITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred cccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 68899999999999999999999999999864
No 6
>KOG0738|consensus
Probab=100.00 E-value=4.3e-32 Score=247.22 Aligned_cols=209 Identities=37% Similarity=0.561 Sum_probs=172.2
Q ss_pred CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773 1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME- 79 (299)
Q Consensus 1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~- 79 (299)
++|++|+..|+.|..+. .|+++||++||||+|||+|+|++|.+++..|+.|+.+.+.++|-|++++.+|-+|+.|+.+
T Consensus 226 EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyA 304 (491)
T KOG0738|consen 226 EAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYA 304 (491)
T ss_pred HHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhC
Confidence 46899999999998754 7899999999999999999999999999999999999999999999999999999999876
Q ss_pred ----------HHhhhhcCCC-chhhh----HHHhhc---------------------CccchhhcCC---------CccH
Q psy13773 80 ----------NFRYAMGKSS-PSALR----ETIVEV---------------------PNITWEDIGG---------LEGV 114 (299)
Q Consensus 80 ----------~~~~~~~~~~-~~~~~----~~l~~l---------------------~~~l~~~~~r---------~p~~ 114 (299)
.+|.+|.... .+..+ ++|.+| ||.+|++++| +|+.
T Consensus 305 PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~ 384 (491)
T KOG0738|consen 305 PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDA 384 (491)
T ss_pred CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCH
Confidence 6777776553 23333 333332 9999999855 7888
Q ss_pred HHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCC
Q psy13773 115 KRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDED 185 (299)
Q Consensus 115 ~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (299)
+.|.. ...++++++.||.+++||||+||..+|++|+++++||.+......+.. .+ . .++
T Consensus 385 ~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~----------~l-a-kE~ 452 (491)
T KOG0738|consen 385 EARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIR----------QL-A-KEE 452 (491)
T ss_pred HHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhh----------hh-h-hhc
Confidence 88865 567889999999999999999999999999999999987431111100 01 1 111
Q ss_pred CCcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q psy13773 186 DPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQ 223 (299)
Q Consensus 186 ~~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~ 223 (299)
.. .+++.+||++|+++++|+|+-+|+..++.|-++|.
T Consensus 453 ~~-~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efG 489 (491)
T KOG0738|consen 453 PK-MPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFG 489 (491)
T ss_pred cc-cccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhc
Confidence 12 57999999999999999999999999999999874
No 7
>KOG0733|consensus
Probab=99.98 E-value=8.6e-32 Score=256.36 Aligned_cols=207 Identities=40% Similarity=0.615 Sum_probs=174.6
Q ss_pred CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773 1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME- 79 (299)
Q Consensus 1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~- 79 (299)
|.|++|.++|++|..+++..+.+|||+||||||||.|+|++|++.+.+|+.|.+.+|.++|+|++++++|.+|++|+..
T Consensus 525 ~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 525 MAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASA 604 (802)
T ss_pred HHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ----------HHhhhhcCCCchhhh----HHHhhc-----------------CccchhhcCC-----------CccHHHH
Q psy13773 80 ----------NFRYAMGKSSPSALR----ETIVEV-----------------PNITWEDIGG-----------LEGVKRE 117 (299)
Q Consensus 80 ----------~~~~~~~~~~~~~~~----~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R 117 (299)
++++.|+........ ++|+++ |+.+|++++| +|+..+|
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 566666665443222 566665 8999999866 6888888
Q ss_pred Hh-----------hhcccCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCC
Q psy13773 118 LQ-----------ELVQDVDLNYIAKVTN--GFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDE 184 (299)
Q Consensus 118 ~~-----------~l~~~v~l~~LA~~t~--glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (299)
.+ ++..+|||+.||..+. ||||+||..||++|++.|+++.+.... ....
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~------------------~~~~ 746 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEID------------------SSED 746 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhcc------------------ccCc
Confidence 86 5678999999998886 999999999999999999998864110 1111
Q ss_pred CCC----cccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q psy13773 185 DDP----VPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQS 225 (299)
Q Consensus 185 ~~~----~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~t 225 (299)
+.. ...+|..||++|+++++|||+..|-..|+..++...-+
T Consensus 747 ~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L~ 791 (802)
T KOG0733|consen 747 DVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSLS 791 (802)
T ss_pred ccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhccc
Confidence 111 23588999999999999999999999998888776544
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-31 Score=242.27 Aligned_cols=174 Identities=39% Similarity=0.618 Sum_probs=151.4
Q ss_pred CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773 1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME- 79 (299)
Q Consensus 1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~- 79 (299)
++|.+||++|++|..++|.||++||||||||||||+|+|++|++..+.|+.+.+++++.+|+|+..+.+|++|..|+..
T Consensus 165 E~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAreka 244 (406)
T COG1222 165 EVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKA 244 (406)
T ss_pred HHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ----------HHhhhhcCCCchhhh-------HHHhhc-----------------CccchhhcCC-----------CccH
Q psy13773 80 ----------NFRYAMGKSSPSALR-------ETIVEV-----------------PNITWEDIGG-----------LEGV 114 (299)
Q Consensus 80 ----------~~~~~~~~~~~~~~~-------~~l~~l-----------------~~~l~~~~~r-----------~p~~ 114 (299)
++...|.....+..+ ++|.++ ++.+|+++.| +|+.
T Consensus 245 PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~ 324 (406)
T COG1222 245 PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDE 324 (406)
T ss_pred CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCH
Confidence 555555554333322 444444 7888998865 6888
Q ss_pred HHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCC
Q psy13773 115 KRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDED 185 (299)
Q Consensus 115 ~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (299)
..|.+ .+.+++||+.||+.|+|+||+|++++|.+|.+.|+|+..
T Consensus 325 ~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R--------------------------- 377 (406)
T COG1222 325 EGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR--------------------------- 377 (406)
T ss_pred HHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc---------------------------
Confidence 77765 567899999999999999999999999999999999764
Q ss_pred CCcccccHHHHHHHHHhcc
Q psy13773 186 DPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 186 ~~~~~it~~Df~~AL~~~~ 204 (299)
..||++||.+|..++.
T Consensus 378 ---~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 378 ---DEVTMEDFLKAVEKVV 393 (406)
T ss_pred ---CeecHHHHHHHHHHHH
Confidence 3699999999998874
No 9
>KOG0735|consensus
Probab=99.97 E-value=6.7e-31 Score=253.63 Aligned_cols=217 Identities=19% Similarity=0.195 Sum_probs=157.8
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHHhhc----CCeecccchhhhhccccccHHHHHHHHHHHHHH-----------HHh
Q psy13773 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPELLTMWFGESEANVRDIFDKVTME-----------NFR 82 (299)
Q Consensus 18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~----~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-----------~~~ 82 (299)
+.....++|.||+|||||.|+++++.+.. .++..++|+.+.........+.++.+|..+..+ .+.
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~ 507 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLA 507 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhh
Confidence 45567899999999999999999999775 355678999987665555666677778776655 222
Q ss_pred hhhcC-CCch-----hhhHHHhhc------------------------Cccchhhc------CCCccHHHHHhhhc----
Q psy13773 83 YAMGK-SSPS-----ALRETIVEV------------------------PNITWEDI------GGLEGVKRELQELV---- 122 (299)
Q Consensus 83 ~~~~~-~~~~-----~~~~~l~~l------------------------~~~l~~~~------~r~p~~~~R~~~l~---- 122 (299)
....+ +... ....++.++ +....+-+ .+.|+..+|.+.+.
T Consensus 508 ~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s 587 (952)
T KOG0735|consen 508 SASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFS 587 (952)
T ss_pred ccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHH
Confidence 21111 1110 011122111 11111101 22577777766211
Q ss_pred ------ccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHH
Q psy13773 123 ------QDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHF 196 (299)
Q Consensus 123 ------~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df 196 (299)
..-|++.++..|+||+..|+..++.+|.+.|+...++. . ...+|.++|
T Consensus 588 ~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~-------------------------~-~klltke~f 641 (952)
T KOG0735|consen 588 KNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN-------------------------G-PKLLTKELF 641 (952)
T ss_pred hhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc-------------------------C-cccchHHHH
Confidence 11145669999999999999999999999998544321 1 126899999
Q ss_pred HHHHHhccCC------------CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC-CCCCCCCcccccCCCCCCCeeee
Q psy13773 197 EEAMRFARRS------------VNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPN-QSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 197 ~~AL~~~~Ps------------Vsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~-~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.+||+.+.|. +.|+|||||.++|+.++|+|+| |.|||.+|+ .+++-|+|||||||||||||||-
T Consensus 642 ~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~--P~kyp~if~~~plr~~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 642 EKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEW--PSKYPQIFANCPLRLRTGILLYGPPGCGKTLLA 718 (952)
T ss_pred HHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhc--cccchHHHhhCCcccccceEEECCCCCcHHHHH
Confidence 9999999873 8999999999999999999999 999999996 58999999999999999999985
No 10
>KOG0739|consensus
Probab=99.96 E-value=8.6e-30 Score=225.47 Aligned_cols=223 Identities=27% Similarity=0.493 Sum_probs=177.4
Q ss_pred CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773 1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME- 79 (299)
Q Consensus 1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~- 79 (299)
++||+|+++|++|.. .-.|.++||||||||+|||.|++++|-+.++.|+.|+.++|+++|+|++++.++++|+.|+..
T Consensus 147 EAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~k 225 (439)
T KOG0739|consen 147 EAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENK 225 (439)
T ss_pred hheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 479999999999976 457899999999999999999999999999999999999999999999999999999999865
Q ss_pred ----------HHhhhhcCCCchhhh----HHHhhc------------------CccchhhcCC---------CccHHHHH
Q psy13773 80 ----------NFRYAMGKSSPSALR----ETIVEV------------------PNITWEDIGG---------LEGVKREL 118 (299)
Q Consensus 80 ----------~~~~~~~~~~~~~~~----~~l~~l------------------~~~l~~~~~r---------~p~~~~R~ 118 (299)
.+|..+.++.+...+ ++|++| ||.+|.+++| +|+...|.
T Consensus 226 PSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~ 305 (439)
T KOG0739|consen 226 PSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARA 305 (439)
T ss_pred CcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhh
Confidence 677777777776665 344433 8999988855 68888887
Q ss_pred h----------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHh----c----CCcc
Q psy13773 119 Q----------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE------REKL----A----GNPA 174 (299)
Q Consensus 119 ~----------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~------~~~~----~----~~~~ 174 (299)
. ..+..-|+.+|+.+|+||||+|+.-+|++|.+..+|+......-.. ...+ . +.++
T Consensus 306 ~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~g 385 (439)
T KOG0739|consen 306 RMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPG 385 (439)
T ss_pred hhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcc
Confidence 5 4456678999999999999999999999999999998865432111 0000 0 1122
Q ss_pred ccc--ccccCCCCCCcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q psy13773 175 ASA--AMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQ 224 (299)
Q Consensus 175 ~~~--~~~~~~~~~~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ 224 (299)
.+. |+....+..-.++||+.||.++|.+.+|+|..+|+-.++.|.+.|.+
T Consensus 386 a~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGq 437 (439)
T KOG0739|consen 386 AIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQ 437 (439)
T ss_pred hhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhcc
Confidence 221 22222233345789999999999999999999999999999888754
No 11
>KOG0736|consensus
Probab=99.95 E-value=8.8e-28 Score=233.93 Aligned_cols=207 Identities=36% Similarity=0.605 Sum_probs=166.0
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
.|-+||+||++|.+ ++.+..+||||||||||||.++|++|-++...|+.|.|.+|.++|+|++|.++|++|++|+..
T Consensus 687 TIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~P 765 (953)
T KOG0736|consen 687 TIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAP 765 (953)
T ss_pred HhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCC
Confidence 36789999999965 888899999999999999999999999999999999999999999999999999999999865
Q ss_pred ---------HHhhhhcCCCch---hhh---HHHhhc-------------------CccchhhcCC-----------C-cc
Q psy13773 80 ---------NFRYAMGKSSPS---ALR---ETIVEV-------------------PNITWEDIGG-----------L-EG 113 (299)
Q Consensus 80 ---------~~~~~~~~~~~~---~~~---~~l~~l-------------------~~~l~~~~~r-----------~-p~ 113 (299)
.+.+.|...+++ ..+ +++.++ |+.+|+++.| . .+
T Consensus 766 CVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d 845 (953)
T KOG0736|consen 766 CVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNED 845 (953)
T ss_pred eEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCcc
Confidence 566666555432 222 455444 8888998866 1 12
Q ss_pred HHH---------HHhhhcccCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCC
Q psy13773 114 VKR---------ELQELVQDVDLNYIAKVT-NGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETED 183 (299)
Q Consensus 114 ~~~---------R~~~l~~~v~l~~LA~~t-~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (299)
.+. |...+.++|++.++|+++ ..|||+|+-+||.+|.+.|++|.++.-... .+...+
T Consensus 846 ~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g-------------~~~~~e 912 (953)
T KOG0736|consen 846 AESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESG-------------TISEEE 912 (953)
T ss_pred HHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhc-------------cccccc
Confidence 222 222677899999999888 689999999999999999999987532110 011112
Q ss_pred CCCCcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Q psy13773 184 EDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTL 222 (299)
Q Consensus 184 ~~~~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i 222 (299)
-+.....|+++||.+|+++++|||+-.|+..|+.+|..|
T Consensus 913 ~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~f 951 (953)
T KOG0736|consen 913 QESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQF 951 (953)
T ss_pred cCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhh
Confidence 223445799999999999999999999999999999876
No 12
>KOG0741|consensus
Probab=99.95 E-value=3.6e-27 Score=221.85 Aligned_cols=236 Identities=28% Similarity=0.422 Sum_probs=175.9
Q ss_pred cCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCe-ecccchhhhhccccccHHHHHHHHHHHHHH-----
Q psy13773 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF-ISVKGPELLTMWFGESEANVRDIFDKVTME----- 79 (299)
Q Consensus 6 pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~-i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~----- 79 (299)
..+-|++...|+++..+++|||||||||||.++|.|...+.... -.|++.++.++|+|+++.++|.+|..|...
T Consensus 241 RvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g 320 (744)
T KOG0741|consen 241 RVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLG 320 (744)
T ss_pred hcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhC
Confidence 35668899999999999999999999999999999999887543 458999999999999999999999988654
Q ss_pred --------------HHhhhhcCCCch------hhhHHHhhc-----------------CccchhhcCC-----------C
Q psy13773 80 --------------NFRYAMGKSSPS------ALRETIVEV-----------------PNITWEDIGG-----------L 111 (299)
Q Consensus 80 --------------~~~~~~~~~~~~------~~~~~l~~l-----------------~~~l~~~~~r-----------~ 111 (299)
++|.+|.+.... ...++|..+ .+.+|+++.| +
T Consensus 321 ~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsL 400 (744)
T KOG0741|consen 321 ANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISL 400 (744)
T ss_pred ccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeC
Confidence 789888776432 222444433 6777888866 7
Q ss_pred ccHHHHHh-------------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Q psy13773 112 EGVKRELQ-------------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAA 178 (299)
Q Consensus 112 p~~~~R~~-------------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~ 178 (299)
|+++.|+. .+..+||+++||.+|..|||++|..|++.|...|+.|.+..+. .
T Consensus 401 PDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~------------~--- 465 (744)
T KOG0741|consen 401 PDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGG------------K--- 465 (744)
T ss_pred CCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCc------------c---
Confidence 88888775 4568999999999999999999999999999999999874320 0
Q ss_pred cccCCCCCCcccccHHHHHHHHHhccCC--CCHHHHHHHHHHHHHHHHhhcCCCCC----CCCCCC-----CCCCCCCCc
Q psy13773 179 METEDEDDPVPEITRAHFEEAMRFARRS--VNDADIRKYEMFAQTLQQSRGFGTNF----RFPSNP-----NQSQSGGPN 247 (299)
Q Consensus 179 ~~~~~~~~~~~~it~~Df~~AL~~~~Ps--Vsw~DIggL~~vk~~i~~ti~~~~Pl----k~Pe~~-----~~~~~k~s~ 247 (299)
............|+++||..||.+++|. ++.+|+..+.. .-.|.||.|. ++-.+| ++....-..
T Consensus 466 ~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~-----~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvS 540 (744)
T KOG0741|consen 466 VEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVM-----NGMINWGPPVTRILDDGKLLVQQVKNSERSPLVS 540 (744)
T ss_pred eecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHh-----CCceeecccHHHHHhhHHHHHHHhhccccCcceE
Confidence 0011112233579999999999999998 67776644321 0124443321 111111 122233567
Q ss_pred ccccCCCCCCCeee
Q psy13773 248 SAPANESGTGGILL 261 (299)
Q Consensus 248 ~l~~g~~gtg~~ll 261 (299)
+||.||||+|||-|
T Consensus 541 vLl~Gp~~sGKTaL 554 (744)
T KOG0741|consen 541 VLLEGPPGSGKTAL 554 (744)
T ss_pred EEEecCCCCChHHH
Confidence 99999999999987
No 13
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1e-25 Score=220.16 Aligned_cols=231 Identities=29% Similarity=0.408 Sum_probs=178.2
Q ss_pred ccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHH----
Q psy13773 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMEN---- 80 (299)
Q Consensus 5 ~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~---- 80 (299)
+|+..|+.|..+.+.++.+++++||+|+|||+++++++.. ...+..+++..+.+++.+.++..++.+|..+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 6899999999999999999999999999999999999999 66667789999999999999999999999887652
Q ss_pred -------HhhhhcCCCchh----hhHHHh----------------hcCccchhhcCC-----------CccHHHHHh---
Q psy13773 81 -------FRYAMGKSSPSA----LRETIV----------------EVPNITWEDIGG-----------LEGVKRELQ--- 119 (299)
Q Consensus 81 -------~~~~~~~~~~~~----~~~~l~----------------~l~~~l~~~~~r-----------~p~~~~R~~--- 119 (299)
+...+....... ..+.+. ..+..++++..+ .++...|.+
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~ 160 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQ 160 (494)
T ss_pred eechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHH
Confidence 222222200000 001111 112222222221 344444432
Q ss_pred ------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccH
Q psy13773 120 ------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITR 193 (299)
Q Consensus 120 ------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~ 193 (299)
....+.++..++..+.||+++++..++..+.+.+++|... .......++.
T Consensus 161 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~------------------------~~~~~~~~~~ 216 (494)
T COG0464 161 IHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAID------------------------LVGEYIGVTE 216 (494)
T ss_pred HHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhc------------------------cCcccccccH
Confidence 2233567899999999999999999999999999888630 0011245889
Q ss_pred HHHHHHHHhccC---------CCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 194 AHFEEAMRFARR---------SVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 194 ~Df~~AL~~~~P---------sVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
+||.++++++.| .|+|+|||||+++|+.+.+.++| |++||++|.. +++...|+|||||||||||+|-
T Consensus 217 ~~~~~~l~~~~~~~~~~~~~~~v~~~diggl~~~k~~l~e~v~~--~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lA 293 (494)
T COG0464 217 DDFEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIET--PLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLA 293 (494)
T ss_pred HHHHHHHHhcCcccccccCCCCcceehhhcHHHHHHHHHHHHHh--HhhChHHHHhcCCCCCCeeEEECCCCCCHHHHH
Confidence 999999999755 49999999999999999999999 9999999988 8899999999999999999974
No 14
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=1.5e-24 Score=220.79 Aligned_cols=211 Identities=38% Similarity=0.653 Sum_probs=164.8
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
.|.+|+.+|++|..+++.++.++|||||||||||++++++|.+++.+++.+++.++.++|+|++++.++.+|..++..
T Consensus 468 ~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p 547 (733)
T TIGR01243 468 AVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAP 547 (733)
T ss_pred HHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred ---------HHhhhhcCCCc-hh----hhHHHhhc-----------------CccchhhcCC-----------CccHHHH
Q psy13773 80 ---------NFRYAMGKSSP-SA----LRETIVEV-----------------PNITWEDIGG-----------LEGVKRE 117 (299)
Q Consensus 80 ---------~~~~~~~~~~~-~~----~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R 117 (299)
.+...+..... .. ..+++.++ ++.+++++.| .|+..+|
T Consensus 548 ~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R 627 (733)
T TIGR01243 548 AIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEAR 627 (733)
T ss_pred EEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHH
Confidence 33333332211 11 11233222 6777777753 6888888
Q ss_pred Hh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCc
Q psy13773 118 LQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPV 188 (299)
Q Consensus 118 ~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
.+ .+..+++++.||..|+||||+|++.+|++|++.|+++......... ... ........
T Consensus 628 ~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~---~~~---------~~~~~~~~ 695 (733)
T TIGR01243 628 KEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEK---LEV---------GEEEFLKD 695 (733)
T ss_pred HHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchh---hhc---------cccccccc
Confidence 76 3356789999999999999999999999999999998764211000 000 00001123
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q psy13773 189 PEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQ 224 (299)
Q Consensus 189 ~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ 224 (299)
..|+.+||.+|+++++|+|+.+++..|++|++.+..
T Consensus 696 ~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 696 LKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 479999999999999999999999999999998853
No 15
>KOG0737|consensus
Probab=99.92 E-value=1e-24 Score=198.58 Aligned_cols=209 Identities=33% Similarity=0.488 Sum_probs=154.8
Q ss_pred CeeeccCcChhhhhcCC-CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH
Q psy13773 1 MISTYPVEHPEKFLKFG-MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME 79 (299)
Q Consensus 1 ~~v~~pl~~p~~~~sl~-i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~ 79 (299)
++|++|+.+|++|.... ..++++||||||||||||++++++|.+.+..++.|+.+.+.++|+|+.++.++.+|..|...
T Consensus 106 e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl 185 (386)
T KOG0737|consen 106 ELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKL 185 (386)
T ss_pred HHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhc
Confidence 36899999999996544 46889999999999999999999999999999999999999999999999999999987643
Q ss_pred -----------HHhhhhcCCCchhhhHHHhhc-----------------------CccchhhcCC---------CccHHH
Q psy13773 80 -----------NFRYAMGKSSPSALRETIVEV-----------------------PNITWEDIGG---------LEGVKR 116 (299)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~l~~l-----------------------~~~l~~~~~r---------~p~~~~ 116 (299)
.+...|...+.+.....-.++ |..+|.++.| +|+..+
T Consensus 186 ~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~q 265 (386)
T KOG0737|consen 186 QPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQ 265 (386)
T ss_pred CcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhh
Confidence 444445433333333222221 6777777633 688888
Q ss_pred HHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhc-CCcccccccccCCC
Q psy13773 117 ELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETE--IRREREKLA-GNPAASAAMETEDE 184 (299)
Q Consensus 117 R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~ 184 (299)
|.. .+.+++|+..+|..|+||||.||+.+|+.|++..+|..+... ......... ..+... -..
T Consensus 266 R~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~-----~~~ 340 (386)
T KOG0737|consen 266 RRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQA-----AAS 340 (386)
T ss_pred HHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcc-----ccc
Confidence 876 456899999999999999999999999999999999998653 000000000 000000 011
Q ss_pred CCCcccccHHHHHHHHHhccCCCCHHHHHH
Q psy13773 185 DDPVPEITRAHFEEAMRFARRSVNDADIRK 214 (299)
Q Consensus 185 ~~~~~~it~~Df~~AL~~~~PsVsw~DIgg 214 (299)
.....+++++||.+|++++-++++-+...+
T Consensus 341 ~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~ 370 (386)
T KOG0737|consen 341 SCLLRPLEQEDFPKAINRVSASVAMDATRM 370 (386)
T ss_pred ccccCcccHHHHHHHHHhhhhHHHHhhhhh
Confidence 122578999999999998888765554433
No 16
>KOG0728|consensus
Probab=99.90 E-value=1.4e-23 Score=182.36 Aligned_cols=173 Identities=32% Similarity=0.521 Sum_probs=142.5
Q ss_pred CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773 1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME- 79 (299)
Q Consensus 1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~- 79 (299)
++|.+|.+||++|.+++|..+++++||||||+|||.|++++|......|+.+++++++.+|+|+..+.++++|-.|+..
T Consensus 161 EVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmareha 240 (404)
T KOG0728|consen 161 EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHA 240 (404)
T ss_pred HHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ----------HHhhhhcCCC---chhhh----HHHhhc-----------------CccchhhcCC-----------CccH
Q psy13773 80 ----------NFRYAMGKSS---PSALR----ETIVEV-----------------PNITWEDIGG-----------LEGV 114 (299)
Q Consensus 80 ----------~~~~~~~~~~---~~~~~----~~l~~l-----------------~~~l~~~~~r-----------~p~~ 114 (299)
.+...+.+.. ++... +++.++ .+.+|+++.| .|+.
T Consensus 241 psiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e 320 (404)
T KOG0728|consen 241 PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE 320 (404)
T ss_pred CceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCH
Confidence 3333333221 12222 233322 5667777754 5677
Q ss_pred HHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCC
Q psy13773 115 KRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDED 185 (299)
Q Consensus 115 ~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (299)
+.|++ .+..-+++..+|.+..|-||++++.+|.+|.+.|+|...
T Consensus 321 ~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerr--------------------------- 373 (404)
T KOG0728|consen 321 EARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERR--------------------------- 373 (404)
T ss_pred HHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhh---------------------------
Confidence 77765 567788999999999999999999999999999998654
Q ss_pred CCcccccHHHHHHHHHhc
Q psy13773 186 DPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 186 ~~~~~it~~Df~~AL~~~ 203 (299)
..+|++||+-|+.++
T Consensus 374 ---vhvtqedfemav~kv 388 (404)
T KOG0728|consen 374 ---VHVTQEDFEMAVAKV 388 (404)
T ss_pred ---ccccHHHHHHHHHHH
Confidence 369999999998776
No 17
>KOG0735|consensus
Probab=99.90 E-value=2e-23 Score=202.12 Aligned_cols=202 Identities=35% Similarity=0.550 Sum_probs=161.5
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
+|.||-+.|.+|.+..+..+.+||||||||||||.|+.++|...+..+|.|.|.++.++|+|.++.++|.+|.+|+..
T Consensus 682 ~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 682 VIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKP 761 (952)
T ss_pred HHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ---------HHhhhhcCCCch-hh---hHHHhhc-----------------CccchhhcCC-----------CccHHHHH
Q psy13773 80 ---------NFRYAMGKSSPS-AL---RETIVEV-----------------PNITWEDIGG-----------LEGVKREL 118 (299)
Q Consensus 80 ---------~~~~~~~~~~~~-~~---~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~ 118 (299)
.+.++|...... .. .++++++ |+.+|+++.| .|+..+|+
T Consensus 762 CiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl 841 (952)
T KOG0735|consen 762 CILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERL 841 (952)
T ss_pred eEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHH
Confidence 455555443222 22 2566665 8889998866 68888888
Q ss_pred h---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcc
Q psy13773 119 Q---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP 189 (299)
Q Consensus 119 ~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
+ ....++|++.+|.+|+||||+|+|.|+..|-+.|+++..... +.+...+
T Consensus 842 ~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~---------------------~~~~~~p 900 (952)
T KOG0735|consen 842 EILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRE---------------------DEEGVVP 900 (952)
T ss_pred HHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhc---------------------CccccCC
Confidence 7 345789999999999999999999999999999999887431 1111122
Q ss_pred cccHHHHHHHHH--hccCCCCHHHHHHHHHHHHHHHH
Q psy13773 190 EITRAHFEEAMR--FARRSVNDADIRKYEMFAQTLQQ 224 (299)
Q Consensus 190 ~it~~Df~~AL~--~~~PsVsw~DIggL~~vk~~i~~ 224 (299)
.++...+..... +.+|+.+.-|.+...++..+++.
T Consensus 901 ~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~~~ 937 (952)
T KOG0735|consen 901 SIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQFLS 937 (952)
T ss_pred ccchhhhhhhhhccCCCccccccchhhhhhHHHhhcC
Confidence 344444444333 55688888888888777766654
No 18
>KOG0729|consensus
Probab=99.89 E-value=2.1e-23 Score=182.71 Aligned_cols=174 Identities=30% Similarity=0.536 Sum_probs=140.6
Q ss_pred CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773 1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME- 79 (299)
Q Consensus 1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~- 79 (299)
++|.+||++|+.|++++|.++++||||||||+|||.++|++|+.....|+.+-+++++.+|+|+..+.++++|++|+..
T Consensus 191 evve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkk 270 (435)
T KOG0729|consen 191 EVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKK 270 (435)
T ss_pred HHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccc
Confidence 3688999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred ----------HHhhhhcCC---Cchhhh----HHHhhc-----------------CccchhhcCC-----------CccH
Q psy13773 80 ----------NFRYAMGKS---SPSALR----ETIVEV-----------------PNITWEDIGG-----------LEGV 114 (299)
Q Consensus 80 ----------~~~~~~~~~---~~~~~~----~~l~~l-----------------~~~l~~~~~r-----------~p~~ 114 (299)
++...+-.. +.+... +++.++ |+.+++++.| +|+.
T Consensus 271 aciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdl 350 (435)
T KOG0729|consen 271 ACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDL 350 (435)
T ss_pred eEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcc
Confidence 222222222 112222 222222 7888888755 5665
Q ss_pred HHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCC
Q psy13773 115 KRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDED 185 (299)
Q Consensus 115 ~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (299)
+.|.. .+..++.++.||..+..-+|++++.+|.+|.+.|++....
T Consensus 351 egrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk-------------------------- 404 (435)
T KOG0729|consen 351 EGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK-------------------------- 404 (435)
T ss_pred cccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh--------------------------
Confidence 55543 4567788899999999999999999999999999976542
Q ss_pred CCcccccHHHHHHHHHhcc
Q psy13773 186 DPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 186 ~~~~~it~~Df~~AL~~~~ 204 (299)
..|..||.+|++++.
T Consensus 405 ----~atekdfl~av~kvv 419 (435)
T KOG0729|consen 405 ----VATEKDFLDAVNKVV 419 (435)
T ss_pred ----hhhHHHHHHHHHHHH
Confidence 467899999998874
No 19
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1e-22 Score=199.13 Aligned_cols=178 Identities=39% Similarity=0.666 Sum_probs=149.6
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
+|.+|+++|+.|...++.++.++|||||||||||+|++++|.+++.+++.+++.++.++|+|+++++++.+|..|+..
T Consensus 257 ~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p 336 (494)
T COG0464 257 AIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAP 336 (494)
T ss_pred HHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred ---------HHhhhhcCCCchh----hhHHHhhc-----------------CccchhhcCC-----------CccHHHHH
Q psy13773 80 ---------NFRYAMGKSSPSA----LRETIVEV-----------------PNITWEDIGG-----------LEGVKREL 118 (299)
Q Consensus 80 ---------~~~~~~~~~~~~~----~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~ 118 (299)
.+...+....... ..+.+.++ ++.+++++.| .|+..+|.
T Consensus 337 ~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~ 416 (494)
T COG0464 337 SIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERL 416 (494)
T ss_pred cEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHH
Confidence 4555555443322 12333333 7778877644 68888887
Q ss_pred hh-----------hcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCC
Q psy13773 119 QE-----------LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDP 187 (299)
Q Consensus 119 ~~-----------l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (299)
+. +..++++..+++.|+||||+|+..+|++|++.++++..
T Consensus 417 ~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~----------------------------- 467 (494)
T COG0464 417 EIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR----------------------------- 467 (494)
T ss_pred HHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-----------------------------
Confidence 61 34578899999999999999999999999999998763
Q ss_pred cccccHHHHHHHHHhccCCCC
Q psy13773 188 VPEITRAHFEEAMRFARRSVN 208 (299)
Q Consensus 188 ~~~it~~Df~~AL~~~~PsVs 208 (299)
...+|.+||.+|+++.+|+|+
T Consensus 468 ~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 468 RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred cCCccHHHHHHHHHhcCCCCC
Confidence 146999999999999999998
No 20
>KOG0727|consensus
Probab=99.89 E-value=1.1e-22 Score=176.98 Aligned_cols=173 Identities=32% Similarity=0.524 Sum_probs=140.2
Q ss_pred CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773 1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME- 79 (299)
Q Consensus 1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~- 79 (299)
+.|.+||.+-++|..++|.+++++|+|||||||||+|++++|+.....|+.+.+++++.+|.|+..+.++.+|+.|+..
T Consensus 169 eavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakena 248 (408)
T KOG0727|consen 169 EAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 248 (408)
T ss_pred HHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred ----------HHhhhhcCCCchhhh-------HHHhhc-----------------CccchhhcCC-----------CccH
Q psy13773 80 ----------NFRYAMGKSSPSALR-------ETIVEV-----------------PNITWEDIGG-----------LEGV 114 (299)
Q Consensus 80 ----------~~~~~~~~~~~~~~~-------~~l~~l-----------------~~~l~~~~~r-----------~p~~ 114 (299)
++.-++-.......+ +++++| .+.+++++.| +|++
T Consensus 249 psiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdr 328 (408)
T KOG0727|consen 249 PSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 328 (408)
T ss_pred CcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCch
Confidence 333333332222222 333333 4556666644 5666
Q ss_pred HHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCC
Q psy13773 115 KRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDED 185 (299)
Q Consensus 115 ~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (299)
+++.. .+.+++|++.+..+++..||+|+.++|++|.+.|+|...
T Consensus 329 rqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr--------------------------- 381 (408)
T KOG0727|consen 329 RQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR--------------------------- 381 (408)
T ss_pred hhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc---------------------------
Confidence 65542 567889999999999999999999999999999998754
Q ss_pred CCcccccHHHHHHHHHhc
Q psy13773 186 DPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 186 ~~~~~it~~Df~~AL~~~ 203 (299)
-.|...||++|-+..
T Consensus 382 ---yvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 382 ---YVVLQKDFEKAYKTV 396 (408)
T ss_pred ---eeeeHHHHHHHHHhh
Confidence 257889999998765
No 21
>KOG0740|consensus
Probab=99.88 E-value=7.2e-23 Score=192.07 Aligned_cols=206 Identities=30% Similarity=0.470 Sum_probs=163.6
Q ss_pred CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773 1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME- 79 (299)
Q Consensus 1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~- 79 (299)
+.|+||++.|++|..+. .+.+++||+||||+|||+|++|||.+.++.++.|+.+.|.++|+|+.++.++.+|..|+..
T Consensus 167 e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~q 245 (428)
T KOG0740|consen 167 EAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQ 245 (428)
T ss_pred hhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcC
Confidence 46899999999998876 6778999999999999999999999999999999999999999999999999999998854
Q ss_pred ----------HHhhhhcCCCchhhh----HHHh-------------------hcCccchhhcCC---------CccHHHH
Q psy13773 80 ----------NFRYAMGKSSPSALR----ETIV-------------------EVPNITWEDIGG---------LEGVKRE 117 (299)
Q Consensus 80 ----------~~~~~~~~~~~~~~~----~~l~-------------------~l~~~l~~~~~r---------~p~~~~R 117 (299)
.+...+........+ +.+. .+||.+|++++| +|+...|
T Consensus 246 PsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr 325 (428)
T KOG0740|consen 246 PSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETR 325 (428)
T ss_pred CeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHH
Confidence 444455444333332 2222 228888887744 7888888
Q ss_pred Hhh----------hcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCC
Q psy13773 118 LQE----------LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDP 187 (299)
Q Consensus 118 ~~~----------l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (299)
... .+.+.+++.|++.|+||||+|+..+|++|++..++...... .+ .......
T Consensus 326 ~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~----------------~~-~~~~~~~ 388 (428)
T KOG0740|consen 326 SLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTT----------------DL-EFIDADK 388 (428)
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccch----------------hh-hhcchhc
Confidence 762 23456789999999999999999999999998887654210 00 0011234
Q ss_pred cccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q psy13773 188 VPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQ 224 (299)
Q Consensus 188 ~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ 224 (299)
.++++..||.+|++.++|+|+...+..+++|-.+|+-
T Consensus 389 ~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~ 425 (428)
T KOG0740|consen 389 IRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGS 425 (428)
T ss_pred cCCCCcchHHHHHHhhccccCccccchhHHHhhhhcc
Confidence 5789999999999999999999999999999888753
No 22
>KOG0726|consensus
Probab=99.88 E-value=2.3e-22 Score=178.01 Aligned_cols=172 Identities=31% Similarity=0.517 Sum_probs=137.8
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
.|.+||.||+.|...+++++++|+|||+||+|||.|++++|+...+.|+.+-+++++.+|.|+..+.+|++|+.|..+
T Consensus 200 svELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~ap 279 (440)
T KOG0726|consen 200 SVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP 279 (440)
T ss_pred hhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred ---------HHhhhhcCCCchhhh-------HHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773 80 ---------NFRYAMGKSSPSALR-------ETIVEV-----------------PNITWEDIGG-----------LEGVK 115 (299)
Q Consensus 80 ---------~~~~~~~~~~~~~~~-------~~l~~l-----------------~~~l~~~~~r-----------~p~~~ 115 (299)
++.-.|-...+...+ ++++++ ...+|+++.| .|+..
T Consensus 280 SIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~ 359 (440)
T KOG0726|consen 280 SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 359 (440)
T ss_pred ceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchh
Confidence 222222222221111 223322 4556666644 45555
Q ss_pred HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773 116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD 186 (299)
Q Consensus 116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
.|.. .+.++|+++.+-..-..|||+||+++|.+|.+.|+|...-
T Consensus 360 TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm--------------------------- 412 (440)
T KOG0726|consen 360 TKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRM--------------------------- 412 (440)
T ss_pred hhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHh---------------------------
Confidence 4432 5678999999888789999999999999999999987652
Q ss_pred CcccccHHHHHHHHHhc
Q psy13773 187 PVPEITRAHFEEAMRFA 203 (299)
Q Consensus 187 ~~~~it~~Df~~AL~~~ 203 (299)
.++.+||.+|.+++
T Consensus 413 ---~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 413 ---KVTMEDFKKAKEKV 426 (440)
T ss_pred ---hccHHHHHHHHHHH
Confidence 48899999998765
No 23
>KOG0652|consensus
Probab=99.88 E-value=1.2e-22 Score=177.51 Aligned_cols=174 Identities=30% Similarity=0.520 Sum_probs=140.8
Q ss_pred CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773 1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME- 79 (299)
Q Consensus 1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~- 79 (299)
++|++|++|++.|.+++|.+++++|+|||||+|||.++|+-|....+.|..+-+..++.+++|...+.+|..|..|...
T Consensus 185 EAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEka 264 (424)
T KOG0652|consen 185 EAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 264 (424)
T ss_pred HHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred ----------HHhhhhcCCCchhhh-------HHHhhc-----------------CccchhhcCC-----------CccH
Q psy13773 80 ----------NFRYAMGKSSPSALR-------ETIVEV-----------------PNITWEDIGG-----------LEGV 114 (299)
Q Consensus 80 ----------~~~~~~~~~~~~~~~-------~~l~~l-----------------~~~l~~~~~r-----------~p~~ 114 (299)
++.-++........+ +++.++ .+.+++++.| .|+.
T Consensus 265 P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne 344 (424)
T KOG0652|consen 265 PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNE 344 (424)
T ss_pred CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCCh
Confidence 333333333222222 222222 5666777643 4555
Q ss_pred HHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCC
Q psy13773 115 KRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDED 185 (299)
Q Consensus 115 ~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (299)
..|.. .+..++++++||+.|++|.|++.+++|.+|.+.|+||..
T Consensus 345 ~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a--------------------------- 397 (424)
T KOG0652|consen 345 EARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA--------------------------- 397 (424)
T ss_pred HHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc---------------------------
Confidence 55443 567899999999999999999999999999999999864
Q ss_pred CCcccccHHHHHHHHHhcc
Q psy13773 186 DPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 186 ~~~~~it~~Df~~AL~~~~ 204 (299)
..|+.+||.+++.+++
T Consensus 398 ---tev~heDfmegI~eVq 413 (424)
T KOG0652|consen 398 ---TEVTHEDFMEGILEVQ 413 (424)
T ss_pred ---ccccHHHHHHHHHHHH
Confidence 2588999999998775
No 24
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.88 E-value=4.7e-22 Score=188.41 Aligned_cols=174 Identities=31% Similarity=0.492 Sum_probs=138.2
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
.|.+|+.+|++|..+++.++++++|+||||||||++++++|++++..++.+.+.++..++.++.+..++.+|..+...
T Consensus 160 ~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P 239 (398)
T PTZ00454 160 AVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAP 239 (398)
T ss_pred HHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCC
Confidence 367899999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred ---------HHhhhhcCCCc---hh----hhHHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773 80 ---------NFRYAMGKSSP---SA----LRETIVEV-----------------PNITWEDIGG-----------LEGVK 115 (299)
Q Consensus 80 ---------~~~~~~~~~~~---~~----~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~ 115 (299)
.+...+..... .. ..+++..+ ++.+++++.| .|+..
T Consensus 240 ~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~ 319 (398)
T PTZ00454 240 SIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 319 (398)
T ss_pred eEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHH
Confidence 23322211111 11 11222221 5666666543 68888
Q ss_pred HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773 116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD 186 (299)
Q Consensus 116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+|.. .+..++++..++.+|+||||+|++.+|.+|++.|+++..
T Consensus 320 ~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~---------------------------- 371 (398)
T PTZ00454 320 QKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR---------------------------- 371 (398)
T ss_pred HHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC----------------------------
Confidence 8765 334678999999999999999999999999999988642
Q ss_pred CcccccHHHHHHHHHhccC
Q psy13773 187 PVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 187 ~~~~it~~Df~~AL~~~~P 205 (299)
..|+.+||.+|++++..
T Consensus 372 --~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 372 --YVILPKDFEKGYKTVVR 388 (398)
T ss_pred --CccCHHHHHHHHHHHHh
Confidence 36899999999998754
No 25
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.86 E-value=8.9e-21 Score=183.53 Aligned_cols=179 Identities=22% Similarity=0.271 Sum_probs=139.0
Q ss_pred hhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-----------
Q psy13773 11 EKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME----------- 79 (299)
Q Consensus 11 ~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~----------- 79 (299)
..+..+++.+++++||+||||||||+++++||++++.+++.+++..+.++++|+++.+++.+|..+...
T Consensus 249 ~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID 328 (489)
T CHL00195 249 KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEID 328 (489)
T ss_pred HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhh
Confidence 345667889999999999999999999999999999999999999999999999999999999987753
Q ss_pred HHhhhhcCC-CchhhhH----HHhhc---------------CccchhhcCC-----------CccHHHHHhh--------
Q psy13773 80 NFRYAMGKS-SPSALRE----TIVEV---------------PNITWEDIGG-----------LEGVKRELQE-------- 120 (299)
Q Consensus 80 ~~~~~~~~~-~~~~~~~----~l~~l---------------~~~l~~~~~r-----------~p~~~~R~~~-------- 120 (299)
.+...+... ......+ ++..+ ++.+++++.| .|+..+|.+.
T Consensus 329 ~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~ 408 (489)
T CHL00195 329 KAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF 408 (489)
T ss_pred hhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc
Confidence 222211111 1111111 11111 5566666533 6888888761
Q ss_pred ---hcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHH
Q psy13773 121 ---LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFE 197 (299)
Q Consensus 121 ---l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~ 197 (299)
...+++++.||++|+||||+||+++|.+|+..|..+. ..++.+||.
T Consensus 409 ~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-------------------------------~~lt~~dl~ 457 (489)
T CHL00195 409 RPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-------------------------------REFTTDDIL 457 (489)
T ss_pred CCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-------------------------------CCcCHHHHH
Confidence 1246789999999999999999999999988886532 358999999
Q ss_pred HHHHhccCC--CCHHHHHHHHHHHH
Q psy13773 198 EAMRFARRS--VNDADIRKYEMFAQ 220 (299)
Q Consensus 198 ~AL~~~~Ps--Vsw~DIggL~~vk~ 220 (299)
+|+++++|. +.-++|..|++|..
T Consensus 458 ~a~~~~~Pls~~~~e~i~~~~~Wa~ 482 (489)
T CHL00195 458 LALKQFIPLAQTEKEQIEALQNWAS 482 (489)
T ss_pred HHHHhcCCCcccCHHHHHHHHHHHH
Confidence 999999996 67789999999876
No 26
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.86 E-value=2.9e-21 Score=183.26 Aligned_cols=176 Identities=38% Similarity=0.577 Sum_probs=138.5
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
.|.+|+.+|+.|..+++.++.+++|+||||||||++++++|.+++..++.+++.++...+.|+.+..++.+|..+...
T Consensus 146 ~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p 225 (389)
T PRK03992 146 AVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAP 225 (389)
T ss_pred HHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCC
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred ---------HHhhhhcCCCc---hh----hhHHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773 80 ---------NFRYAMGKSSP---SA----LRETIVEV-----------------PNITWEDIGG-----------LEGVK 115 (299)
Q Consensus 80 ---------~~~~~~~~~~~---~~----~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~ 115 (299)
.+...+..... .. ..+++.++ ++.+++++.| .|+..
T Consensus 226 ~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~ 305 (389)
T PRK03992 226 SIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEE 305 (389)
T ss_pred eEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHH
Confidence 23322222111 11 11222211 4455555532 68888
Q ss_pred HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773 116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD 186 (299)
Q Consensus 116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+|.+ .+..++++..+|..|+||||+|++.+|++|++.|+++..
T Consensus 306 ~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~---------------------------- 357 (389)
T PRK03992 306 GRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR---------------------------- 357 (389)
T ss_pred HHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC----------------------------
Confidence 8876 233568899999999999999999999999999987531
Q ss_pred CcccccHHHHHHHHHhccCCC
Q psy13773 187 PVPEITRAHFEEAMRFARRSV 207 (299)
Q Consensus 187 ~~~~it~~Df~~AL~~~~PsV 207 (299)
..|+.+||.+|+++++++-
T Consensus 358 --~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 358 --TEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred --CCcCHHHHHHHHHHHhccc
Confidence 3589999999999998853
No 27
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.84 E-value=1.3e-20 Score=180.02 Aligned_cols=173 Identities=32% Similarity=0.515 Sum_probs=135.2
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
+|.+|+.+|++|..+++.++.+++|+||||||||++++++|+++...++.+.+.++...+.|+....++.+|..+...
T Consensus 198 ~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P 277 (438)
T PTZ00361 198 AVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAP 277 (438)
T ss_pred HHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCC
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999877643
Q ss_pred ---------HHhhhhcCCCc---hh----hhHHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773 80 ---------NFRYAMGKSSP---SA----LRETIVEV-----------------PNITWEDIGG-----------LEGVK 115 (299)
Q Consensus 80 ---------~~~~~~~~~~~---~~----~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~ 115 (299)
.+...+..... .. ..+++..+ ++.+++++.| .|+..
T Consensus 278 ~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~ 357 (438)
T PTZ00361 278 SIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEK 357 (438)
T ss_pred cEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHH
Confidence 22222211111 00 11222211 4555555532 67777
Q ss_pred HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773 116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD 186 (299)
Q Consensus 116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+|.+ .+..++++..++..++||||+|++.+|.+|++.|+++..
T Consensus 358 ~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r---------------------------- 409 (438)
T PTZ00361 358 TKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR---------------------------- 409 (438)
T ss_pred HHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC----------------------------
Confidence 7765 234678999999999999999999999999999998652
Q ss_pred CcccccHHHHHHHHHhcc
Q psy13773 187 PVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 187 ~~~~it~~Df~~AL~~~~ 204 (299)
..|+.+||.+|+.++.
T Consensus 410 --~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 410 --MKVTQADFRKAKEKVL 425 (438)
T ss_pred --CccCHHHHHHHHHHHH
Confidence 3689999999999874
No 28
>KOG0731|consensus
Probab=99.83 E-value=2.4e-20 Score=184.82 Aligned_cols=170 Identities=38% Similarity=0.589 Sum_probs=140.5
Q ss_pred ccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-----
Q psy13773 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME----- 79 (299)
Q Consensus 5 ~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~----- 79 (299)
-=|++|+.|..++++.|+++||+||||||||.|+|++|++.+.+|+.+++++++..+.+.....++.+|..++..
T Consensus 328 ~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~ii 407 (774)
T KOG0731|consen 328 KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSII 407 (774)
T ss_pred HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEE
Confidence 348899999999999999999999999999999999999999999999999999999988889999999999875
Q ss_pred ------HHhhhhcC---CC-----chhhhHHHhhc-----------------CccchhhcCC-----------CccHHHH
Q psy13773 80 ------NFRYAMGK---SS-----PSALRETIVEV-----------------PNITWEDIGG-----------LEGVKRE 117 (299)
Q Consensus 80 ------~~~~~~~~---~~-----~~~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R 117 (299)
++...+.. .. ...+.+++.++ ++.+|+++.| .|+...|
T Consensus 408 fideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r 487 (774)
T KOG0731|consen 408 FIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGR 487 (774)
T ss_pred EecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhh
Confidence 44444421 11 12333666655 7888888755 6888877
Q ss_pred Hh---------hh-cccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCC
Q psy13773 118 LQ---------EL-VQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDP 187 (299)
Q Consensus 118 ~~---------~l-~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (299)
.. .+ .+++++..+|.+|+||||+||+.||.+|+..|.|+..
T Consensus 488 ~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~----------------------------- 538 (774)
T KOG0731|consen 488 ASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL----------------------------- 538 (774)
T ss_pred HHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc-----------------------------
Confidence 75 22 3778887799999999999999999999999998753
Q ss_pred cccccHHHHHHHHHhcc
Q psy13773 188 VPEITRAHFEEAMRFAR 204 (299)
Q Consensus 188 ~~~it~~Df~~AL~~~~ 204 (299)
..|+..||+.|++++.
T Consensus 539 -~~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 539 -REIGTKDLEYAIERVI 554 (774)
T ss_pred -CccchhhHHHHHHHHh
Confidence 3688999999999553
No 29
>KOG0734|consensus
Probab=99.80 E-value=1.7e-19 Score=170.44 Aligned_cols=152 Identities=34% Similarity=0.516 Sum_probs=125.3
Q ss_pred ccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHH----
Q psy13773 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMEN---- 80 (299)
Q Consensus 5 ~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~---- 80 (299)
--|+.|+.|..|+=+.|++|||+||||+|||+|+|++|++.+.+|++..++++-..++|...+.+|.+|..|+..+
T Consensus 321 efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcII 400 (752)
T KOG0734|consen 321 EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCII 400 (752)
T ss_pred HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEE
Confidence 3478899999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred -------HhhhhcCCCch----hhhHHHhhc-----------------CccchhhcCC-----------CccHHHHHh--
Q psy13773 81 -------FRYAMGKSSPS----ALRETIVEV-----------------PNITWEDIGG-----------LEGVKRELQ-- 119 (299)
Q Consensus 81 -------~~~~~~~~~~~----~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~~-- 119 (299)
+...|...... .+.++|.+| |+.+|+++.| .|+.+.|.+
T Consensus 401 FIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL 480 (752)
T KOG0734|consen 401 FIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEIL 480 (752)
T ss_pred EEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHH
Confidence 22233222221 223555555 7888888755 678887876
Q ss_pred -------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy13773 120 -------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQ 156 (299)
Q Consensus 120 -------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r 156 (299)
...++||++-||+=|.||||+||..++..|+..|...
T Consensus 481 ~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 481 KLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD 524 (752)
T ss_pred HHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc
Confidence 3457999999999999999999999999998877553
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.80 E-value=4.9e-19 Score=166.81 Aligned_cols=171 Identities=40% Similarity=0.634 Sum_probs=130.2
Q ss_pred eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH---
Q psy13773 3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--- 79 (299)
Q Consensus 3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--- 79 (299)
|.+|+.+|+.|..+++.++.+++|+||||||||++++++|..++..++.+.+.++...+.++....++.+|..+...
T Consensus 138 i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~ 217 (364)
T TIGR01242 138 VELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPS 217 (364)
T ss_pred HHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCc
Confidence 56899999999999999999999999999999999999999999999999999998888898888899999877542
Q ss_pred --------HHhhhhcCCC---ch----hhhHHHhhc-----------------CccchhhcCC-----------CccHHH
Q psy13773 80 --------NFRYAMGKSS---PS----ALRETIVEV-----------------PNITWEDIGG-----------LEGVKR 116 (299)
Q Consensus 80 --------~~~~~~~~~~---~~----~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~ 116 (299)
.+...+.... .. ...+.+.++ ++.+++++.+ .|+..+
T Consensus 218 il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~ 297 (364)
T TIGR01242 218 IIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEG 297 (364)
T ss_pred EEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHH
Confidence 1211111111 00 111222111 3334444432 677777
Q ss_pred HHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCC
Q psy13773 117 ELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDP 187 (299)
Q Consensus 117 R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (299)
|.+ .+..++++..++..|+||||+|++.+|.+|++.|+++..
T Consensus 298 r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~----------------------------- 348 (364)
T TIGR01242 298 RLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREER----------------------------- 348 (364)
T ss_pred HHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-----------------------------
Confidence 766 223457899999999999999999999999999987642
Q ss_pred cccccHHHHHHHHHhc
Q psy13773 188 VPEITRAHFEEAMRFA 203 (299)
Q Consensus 188 ~~~it~~Df~~AL~~~ 203 (299)
..|+.+||.+|++++
T Consensus 349 -~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 349 -DYVTMDDFIKAVEKV 363 (364)
T ss_pred -CccCHHHHHHHHHHh
Confidence 368999999999875
No 31
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.77 E-value=4.3e-18 Score=148.94 Aligned_cols=166 Identities=30% Similarity=0.548 Sum_probs=126.1
Q ss_pred CcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhh-
Q psy13773 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAM- 85 (299)
Q Consensus 7 l~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~- 85 (299)
|..|+.|-.+ .++.||+|||||+|||+++|+||++...+++.+...+|...++|+..+.++++|..|+..+.|...
T Consensus 140 LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFi 216 (368)
T COG1223 140 LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFI 216 (368)
T ss_pred hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEe
Confidence 6678888774 588999999999999999999999999999999999999999999999999999999865222211
Q ss_pred ------------cCCC---chhhhHHHhhc-----------------CccchhhcCC---------CccHHHHHh-----
Q psy13773 86 ------------GKSS---PSALRETIVEV-----------------PNITWEDIGG---------LEGVKRELQ----- 119 (299)
Q Consensus 86 ------------~~~~---~~~~~~~l~~l-----------------~~~l~~~~~r---------~p~~~~R~~----- 119 (299)
++.. +.....+|+++ ++.+|+++++ +|+.++|.+
T Consensus 217 DE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y 296 (368)
T COG1223 217 DELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYY 296 (368)
T ss_pred hhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHH
Confidence 1111 11122334444 6777777643 788888876
Q ss_pred ----hhcccCCHHHHHHhcCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHH
Q psy13773 120 ----ELVQDVDLNYIAKVTNGFSGADLTE-ICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRA 194 (299)
Q Consensus 120 ----~l~~~v~l~~LA~~t~glSggDl~~-Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 194 (299)
++--+.+++.++++|.||||+||+. +.+.|.+.|+.... ..|+.+
T Consensus 297 ~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~------------------------------e~v~~e 346 (368)
T COG1223 297 AKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR------------------------------EKVERE 346 (368)
T ss_pred HHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch------------------------------hhhhHH
Confidence 3334667899999999999999875 55556666655432 258899
Q ss_pred HHHHHHHhccC
Q psy13773 195 HFEEAMRFARR 205 (299)
Q Consensus 195 Df~~AL~~~~P 205 (299)
||+.|+++-++
T Consensus 347 die~al~k~r~ 357 (368)
T COG1223 347 DIEKALKKERK 357 (368)
T ss_pred HHHHHHHhhcc
Confidence 99999998665
No 32
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.77 E-value=1.1e-17 Score=163.62 Aligned_cols=169 Identities=37% Similarity=0.587 Sum_probs=130.8
Q ss_pred cCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH------
Q psy13773 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME------ 79 (299)
Q Consensus 6 pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~------ 79 (299)
.+.+|+.|..++...+++++|+||||||||+++++||++.+.+++.+++.++.+.+.+...+.++.+|..+...
T Consensus 73 ~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~ 152 (495)
T TIGR01241 73 FLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIF 152 (495)
T ss_pred HHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEE
Confidence 36789999999999999999999999999999999999999999999999999999999999999999988653
Q ss_pred -----HHhhhhcCCC---c----hhhhHHHhhc-----------------CccchhhcCC-----------CccHHHHHh
Q psy13773 80 -----NFRYAMGKSS---P----SALRETIVEV-----------------PNITWEDIGG-----------LEGVKRELQ 119 (299)
Q Consensus 80 -----~~~~~~~~~~---~----~~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~~ 119 (299)
.+...+.... . ....+++.++ ++.+++++.| .|+..+|.+
T Consensus 153 iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~ 232 (495)
T TIGR01241 153 IDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREE 232 (495)
T ss_pred EechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHH
Confidence 3333332210 0 0111222221 5566666643 688888776
Q ss_pred ---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCccc
Q psy13773 120 ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPE 190 (299)
Q Consensus 120 ---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (299)
.+..++++..+|..|.||||+|++.+|.+|+..|.++.. ..
T Consensus 233 il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~------------------------------~~ 282 (495)
T TIGR01241 233 ILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNK------------------------------TE 282 (495)
T ss_pred HHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------------------------------CC
Confidence 123467889999999999999999999999888766421 36
Q ss_pred ccHHHHHHHHHhcc
Q psy13773 191 ITRAHFEEAMRFAR 204 (299)
Q Consensus 191 it~~Df~~AL~~~~ 204 (299)
|+.+||++|+.++.
T Consensus 283 i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 283 ITMNDIEEAIDRVI 296 (495)
T ss_pred CCHHHHHHHHHHHh
Confidence 89999999999874
No 33
>KOG0651|consensus
Probab=99.76 E-value=1.7e-18 Score=154.63 Aligned_cols=172 Identities=31% Similarity=0.543 Sum_probs=136.7
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
.|.+|+..|++|..++|++|.+++||||+|+|||.+++++|..++.+++.+....|.+++.|++.+.||+.|..|+..
T Consensus 147 ~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~p 226 (388)
T KOG0651|consen 147 VIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIP 226 (388)
T ss_pred heEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCc
Confidence 588999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred ---------HHhhhhcCCCchhhh-------HHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773 80 ---------NFRYAMGKSSPSALR-------ETIVEV-----------------PNITWEDIGG-----------LEGVK 115 (299)
Q Consensus 80 ---------~~~~~~~~~~~~~~~-------~~l~~l-----------------~~~l~~~~~r-----------~p~~~ 115 (299)
++...+.....+..+ +++.++ |+.+++++.| +|++.
T Consensus 227 ciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~ 306 (388)
T KOG0651|consen 227 CIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQ 306 (388)
T ss_pred eEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchh
Confidence 222222222222222 222222 7777777755 46666
Q ss_pred HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773 116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD 186 (299)
Q Consensus 116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
.|.. .....++.+.+.+.+++|.|+|++.+|.+|.+.|++....
T Consensus 307 ~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~--------------------------- 359 (388)
T KOG0651|consen 307 ARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERD--------------------------- 359 (388)
T ss_pred hceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhH---------------------------
Confidence 6654 1223567788999999999999999999999999876542
Q ss_pred CcccccHHHHHHHHHhc
Q psy13773 187 PVPEITRAHFEEAMRFA 203 (299)
Q Consensus 187 ~~~~it~~Df~~AL~~~ 203 (299)
.+-.+||.+|+.+.
T Consensus 360 ---~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 360 ---EVLHEDFMKLVRKQ 373 (388)
T ss_pred ---HHhHHHHHHHHHHH
Confidence 35579999999765
No 34
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.1e-18 Score=170.15 Aligned_cols=172 Identities=36% Similarity=0.561 Sum_probs=142.4
Q ss_pred eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH---
Q psy13773 3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--- 79 (299)
Q Consensus 3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--- 79 (299)
|+-.|+.|..|..++..-|++++|+||||+|||+|+|++|++.+.+++.+++++.+..++|--...+|.+|..|+..
T Consensus 165 iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~ 244 (596)
T COG0465 165 LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPC 244 (596)
T ss_pred HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCC
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred --------HHhhhhcCC-Cc------hhhhHHHhhc-----------------CccchhhcCC-----------CccHHH
Q psy13773 80 --------NFRYAMGKS-SP------SALRETIVEV-----------------PNITWEDIGG-----------LEGVKR 116 (299)
Q Consensus 80 --------~~~~~~~~~-~~------~~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~ 116 (299)
+...+|... +. ....++++++ |+.+|+++.| .|+...
T Consensus 245 IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~g 324 (596)
T COG0465 245 IIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKG 324 (596)
T ss_pred eEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhh
Confidence 223333211 10 1233555555 6778888855 688777
Q ss_pred HHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCC
Q psy13773 117 ELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDP 187 (299)
Q Consensus 117 R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (299)
|.. .+..++++..+|+.|.||||+|+..++.+|++.|.|+..
T Consensus 325 Re~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~----------------------------- 375 (596)
T COG0465 325 REQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK----------------------------- 375 (596)
T ss_pred HHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC-----------------------------
Confidence 765 456789999999999999999999999999999998764
Q ss_pred cccccHHHHHHHHHhcc
Q psy13773 188 VPEITRAHFEEAMRFAR 204 (299)
Q Consensus 188 ~~~it~~Df~~AL~~~~ 204 (299)
..|+..||++|+.++-
T Consensus 376 -~~i~~~~i~ea~drv~ 391 (596)
T COG0465 376 -KEITMRDIEEAIDRVI 391 (596)
T ss_pred -eeEeccchHHHHHHHh
Confidence 3688999999998874
No 35
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.74 E-value=1.6e-17 Score=175.81 Aligned_cols=167 Identities=18% Similarity=0.207 Sum_probs=121.1
Q ss_pred cCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhcc------------------------
Q psy13773 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW------------------------ 61 (299)
Q Consensus 6 pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~------------------------ 61 (299)
|...+..+..+++.+++||||+||||||||.|||+||++.+.+++.|++.++...+
T Consensus 1615 ~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~ 1694 (2281)
T CHL00206 1615 PSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDID 1694 (2281)
T ss_pred cccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccc
Confidence 44455677888999999999999999999999999999999999999999987643
Q ss_pred -----------------ccccHH--HHHHHHHHHHHH-----------HHhhhhcCCCchhhhHHHh-------------
Q psy13773 62 -----------------FGESEA--NVRDIFDKVTME-----------NFRYAMGKSSPSALRETIV------------- 98 (299)
Q Consensus 62 -----------------~g~~~~--~i~~~f~~a~~~-----------~~~~~~~~~~~~~~~~~l~------------- 98 (299)
++..+. .++.+|+.|+.. +++..... .....+++.
T Consensus 1695 ~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~--~ltL~qLLneLDg~~~~~s~~~ 1772 (2281)
T CHL00206 1695 RDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESN--YLSLGLLVNSLSRDCERCSTRN 1772 (2281)
T ss_pred cccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccc--eehHHHHHHHhccccccCCCCC
Confidence 111222 378899998875 22211100 000111111
Q ss_pred -------hcCccchhhcCC-----------CccHHHHHhhh-----------c-ccCCHHHHHHhcCCCCHHHHHHHHHH
Q psy13773 99 -------EVPNITWEDIGG-----------LEGVKRELQEL-----------V-QDVDLNYIAKVTNGFSGADLTEICQR 148 (299)
Q Consensus 99 -------~l~~~l~~~~~r-----------~p~~~~R~~~l-----------~-~~v~l~~LA~~t~glSggDl~~Lv~~ 148 (299)
..|+.+|+|+.| .|+..+|.+.+ . ..+++..+|.+|.||||+||..||.+
T Consensus 1773 VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNE 1852 (2281)
T CHL00206 1773 ILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNE 1852 (2281)
T ss_pred EEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHH
Confidence 128888888865 45665555421 1 23678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 149 ACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 149 A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
|++.|+++.. ..|+.+||..|+.+..
T Consensus 1853 AaliAirq~k------------------------------s~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1853 ALSISITQKK------------------------------SIIDTNTIRSALHRQT 1878 (2281)
T ss_pred HHHHHHHcCC------------------------------CccCHHHHHHHHHHHH
Confidence 9999998753 2578899999988764
No 36
>KOG0732|consensus
Probab=99.71 E-value=9e-18 Score=170.73 Aligned_cols=211 Identities=28% Similarity=0.442 Sum_probs=147.3
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-----CeecccchhhhhccccccHHHHHHHHHHH
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPELLTMWFGESEANVRDIFDKV 76 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-----~~i~i~~~~l~~~~~g~~~~~i~~~f~~a 76 (299)
.|.+||+.|+.|.+|++.+++++|++||||+|||..++++|..+.. .++.-++.+..++|+|+.++.++.+|+.|
T Consensus 280 mVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA 359 (1080)
T KOG0732|consen 280 MVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEA 359 (1080)
T ss_pred HHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999998864 34445788999999999999999999999
Q ss_pred HHH-----------HHhhhhcCC---Cchhhh-HHHh---hc--------------CccchhhcCC-----------Ccc
Q psy13773 77 TME-----------NFRYAMGKS---SPSALR-ETIV---EV--------------PNITWEDIGG-----------LEG 113 (299)
Q Consensus 77 ~~~-----------~~~~~~~~~---~~~~~~-~~l~---~l--------------~~~l~~~~~r-----------~p~ 113 (299)
+.. .+.+.++.- ...... .+|. .+ ++.++++++| +|+
T Consensus 360 ~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~ 439 (1080)
T KOG0732|consen 360 QKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPD 439 (1080)
T ss_pred hccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCc
Confidence 865 122222111 001111 1111 11 6677777755 677
Q ss_pred HHHHHhhh-------cccC---CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCC
Q psy13773 114 VKRELQEL-------VQDV---DLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETED 183 (299)
Q Consensus 114 ~~~R~~~l-------~~~v---~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (299)
...|...+ ..-+ -+..+|..|.||-|+|++.+|..|++.+++|.-........ .+ .
T Consensus 440 ~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~-----------kl-~-- 505 (1080)
T KOG0732|consen 440 VDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSD-----------KL-L-- 505 (1080)
T ss_pred hHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccc-----------cc-c--
Confidence 77776521 1222 23789999999999999999999999999875421100000 00 0
Q ss_pred CCCCcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 184 EDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 184 ~~~~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
-......|..+||..|+.+..|+ ..|+++.+++|.+|++++|.
T Consensus 506 ~d~~~ikV~~~~f~~A~~~i~ps------------------------------------~~R~~~~~s~Pl~~~~~~ll 548 (1080)
T KOG0732|consen 506 IDVALIKVEVRDFVEAMSRITPS------------------------------------SRRSSVIFSRPLSTYLKPLL 548 (1080)
T ss_pred ccchhhhhhhHhhhhhhhccCCC------------------------------------CCccccCCCCCCCcceeccc
Confidence 01112236677777777666551 34668999999999999965
No 37
>CHL00176 ftsH cell division protein; Validated
Probab=99.71 E-value=4.9e-17 Score=162.13 Aligned_cols=169 Identities=36% Similarity=0.546 Sum_probs=129.0
Q ss_pred ccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-----
Q psy13773 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME----- 79 (299)
Q Consensus 5 ~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~----- 79 (299)
..++.|+.|..++...+++++|+||||||||++++++|++.+.+++.++|.++...+.+.....++.+|..+...
T Consensus 200 ~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~IL 279 (638)
T CHL00176 200 SFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIV 279 (638)
T ss_pred HHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEE
Confidence 347789999999999999999999999999999999999999999999999998888887788899999988753
Q ss_pred ------HHhhhhcCC---Cch----hhhHHHhhc-----------------CccchhhcCC-----------CccHHHHH
Q psy13773 80 ------NFRYAMGKS---SPS----ALRETIVEV-----------------PNITWEDIGG-----------LEGVKREL 118 (299)
Q Consensus 80 ------~~~~~~~~~---~~~----~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~ 118 (299)
.+...+... ... ...+++.++ ++.+++++.| .|+.++|.
T Consensus 280 fIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~ 359 (638)
T CHL00176 280 FIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRL 359 (638)
T ss_pred EEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHH
Confidence 232222211 011 111233222 3445555532 68888887
Q ss_pred h---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcc
Q psy13773 119 Q---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP 189 (299)
Q Consensus 119 ~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
. .+..++++..+|.+|.||||+||+.+|.+|+..|.++.. .
T Consensus 360 ~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~------------------------------~ 409 (638)
T CHL00176 360 DILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK------------------------------A 409 (638)
T ss_pred HHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC------------------------------C
Confidence 6 234567789999999999999999999999888876532 3
Q ss_pred cccHHHHHHHHHhc
Q psy13773 190 EITRAHFEEAMRFA 203 (299)
Q Consensus 190 ~it~~Df~~AL~~~ 203 (299)
.||.+||++|+.++
T Consensus 410 ~It~~dl~~Ai~rv 423 (638)
T CHL00176 410 TITMKEIDTAIDRV 423 (638)
T ss_pred CcCHHHHHHHHHHH
Confidence 68999999999887
No 38
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=8.7e-18 Score=152.88 Aligned_cols=57 Identities=18% Similarity=0.171 Sum_probs=53.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
+|.|+++|||||++-.++|+|+|++ ||+|||+|.. |+.--.|||||||||||||||-
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VEL--PL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVEL--PLKNPELFEELGIDPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcc--cccCHHHHHHcCCCCCCceEeeCCCCCcHHHHH
Confidence 5899999999999999999999999 9999999976 7788899999999999999984
No 39
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.66 E-value=1.8e-15 Score=146.82 Aligned_cols=77 Identities=47% Similarity=0.947 Sum_probs=68.8
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC----------eecccchhhhhccccccHHHHHH
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN----------FISVKGPELLTMWFGESEANVRD 71 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~----------~i~i~~~~l~~~~~g~~~~~i~~ 71 (299)
.|.+|+++|++|..+++.++.++|||||||||||++++++|+++... ++.+.+.++.+++.+++++.++.
T Consensus 197 ~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~ 276 (512)
T TIGR03689 197 AVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRL 276 (512)
T ss_pred HHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHH
Confidence 36789999999999999999999999999999999999999987543 55677788889999999999999
Q ss_pred HHHHHHH
Q psy13773 72 IFDKVTM 78 (299)
Q Consensus 72 ~f~~a~~ 78 (299)
+|+.++.
T Consensus 277 iF~~Ar~ 283 (512)
T TIGR03689 277 IFQRARE 283 (512)
T ss_pred HHHHHHH
Confidence 9998765
No 40
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.66 E-value=8.9e-16 Score=154.20 Aligned_cols=169 Identities=34% Similarity=0.549 Sum_probs=129.2
Q ss_pred CcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-------
Q psy13773 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME------- 79 (299)
Q Consensus 7 l~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~------- 79 (299)
+..|+.|..++...+++++|+||+|||||+++++++++++.+++.+++.++...+.+.....++.+|..+...
T Consensus 171 ~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifI 250 (644)
T PRK10733 171 LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFI 250 (644)
T ss_pred hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEe
Confidence 4567777777777888999999999999999999999999999999999999888898888999999887643
Q ss_pred ----HHhhhhcCCC---ch----hhhHHHhhc-----------------CccchhhcCC-----------CccHHHHHh-
Q psy13773 80 ----NFRYAMGKSS---PS----ALRETIVEV-----------------PNITWEDIGG-----------LEGVKRELQ- 119 (299)
Q Consensus 80 ----~~~~~~~~~~---~~----~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~~- 119 (299)
.+...+.... .. ...+++.++ ++.+++++.| .|+..+|.+
T Consensus 251 DEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~I 330 (644)
T PRK10733 251 DEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQI 330 (644)
T ss_pred hhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHH
Confidence 2333332210 01 111233222 5666666643 688777765
Q ss_pred --------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccc
Q psy13773 120 --------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEI 191 (299)
Q Consensus 120 --------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 191 (299)
.+..++++..+|..|.||||+|+.++|.+|+..|+++.. ..|
T Consensus 331 l~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~------------------------------~~i 380 (644)
T PRK10733 331 LKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK------------------------------RVV 380 (644)
T ss_pred HHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCC------------------------------Ccc
Confidence 344678899999999999999999999999999876531 368
Q ss_pred cHHHHHHHHHhccC
Q psy13773 192 TRAHFEEAMRFARR 205 (299)
Q Consensus 192 t~~Df~~AL~~~~P 205 (299)
+.+||++|+.++.+
T Consensus 381 ~~~d~~~a~~~v~~ 394 (644)
T PRK10733 381 SMVEFEKAKDKIMM 394 (644)
T ss_pred cHHHHHHHHHHHhc
Confidence 99999999987754
No 41
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.52 E-value=9.6e-14 Score=128.34 Aligned_cols=142 Identities=12% Similarity=0.081 Sum_probs=106.4
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH----------------
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME---------------- 79 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~---------------- 79 (299)
++++++.+++|+||||||||+++++||++++..++.+++.+|.++|+|++++.++++|..|...
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 5689999999999999999999999999999999999999999999999999999999998742
Q ss_pred HHhhhhcCCCchhhh-----HHHhhc-----------------------------CccchhhcCC---------CccHHH
Q psy13773 80 NFRYAMGKSSPSALR-----ETIVEV-----------------------------PNITWEDIGG---------LEGVKR 116 (299)
Q Consensus 80 ~~~~~~~~~~~~~~~-----~~l~~l-----------------------------~~~l~~~~~r---------~p~~~~ 116 (299)
+++..+......... .+++.+ ++.+++++.| .|+.++
T Consensus 223 A~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~ 302 (413)
T PLN00020 223 AGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 302 (413)
T ss_pred hcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHH
Confidence 344444322111111 122110 5556666654 688899
Q ss_pred HHhhh---c-----ccCCHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHHH
Q psy13773 117 ELQEL---V-----QDVDLNYIAKVTNG----FSGADLTEICQRACKLAIRQS 157 (299)
Q Consensus 117 R~~~l---~-----~~v~l~~LA~~t~g----lSggDl~~Lv~~A~~~a~~r~ 157 (299)
|.+.+ + ...++..|+..+.| |+|+-..+++.++...-+.+.
T Consensus 303 R~eIL~~~~r~~~l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~ 355 (413)
T PLN00020 303 RIGVVHGIFRDDGVSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEV 355 (413)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHh
Confidence 88732 1 23455677777755 889999999998877777665
No 42
>KOG0739|consensus
Probab=99.50 E-value=5.8e-15 Score=131.59 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=61.2
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 193 RAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 193 ~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
+.-+..|+-.-+|+|+|+||-||+..|+.+.|+|-+ |.|+|.+|.-.-+--+||||||||||||.-|-
T Consensus 116 r~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVIL--PIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLA 183 (439)
T KOG0739|consen 116 RSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVIL--PIKFPQLFTGKRKPWRGILLYGPPGTGKSYLA 183 (439)
T ss_pred HHHhhhhhhccCCCCchhhhccchhHHHHHHhheee--cccchhhhcCCCCcceeEEEeCCCCCcHHHHH
Confidence 355666777778999999999999999999999999 99999999977777799999999999998764
No 43
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.41 E-value=4.5e-13 Score=114.93 Aligned_cols=158 Identities=14% Similarity=0.169 Sum_probs=96.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh--cCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC--QANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l--~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
+++.+.+++.+.|+||||||||||+|||...- ..+.|.+++.++.... .+..+.++. ....+..+-
T Consensus 21 i~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~------~~~~~R~~v-----GmVFQ~fnLF 89 (240)
T COG1126 21 ISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK------DILKLRRKV-----GMVFQQFNLF 89 (240)
T ss_pred cceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh------hHHHHHHhc-----Ceeccccccc
Confidence 56788999999999999999999999999854 5677888887664331 222222211 111111111
Q ss_pred --hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 --SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 91 --~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
-+..+.+..-|-.... ....+.++++..+++.|++.+ ...++..+||||.|+++.+.++..-.+
T Consensus 90 PHlTvleNv~lap~~v~~--~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~----------- 156 (240)
T COG1126 90 PHLTVLENVTLAPVKVKK--LSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPK----------- 156 (240)
T ss_pred ccchHHHHHHhhhHHHcC--CCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCC-----------
Confidence 1111111111111000 112345667779999999954 557889999999999887665543222
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
.+..+|+++..+|-...++.+.+++...
T Consensus 157 ----------vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 157 ----------VMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred ----------EEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 2446667777776666677776666543
No 44
>KOG0737|consensus
Probab=99.40 E-value=5.2e-14 Score=128.88 Aligned_cols=55 Identities=22% Similarity=0.114 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--CCCCCCCCcccccCCCCCCCeeeec
Q psy13773 207 VNDADIRKYEMFAQTLQQSRGFGTNFRFPSNP--NQSQSGGPNSAPANESGTGGILLMF 263 (299)
Q Consensus 207 Vsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~--~~~~~k~s~~l~~g~~gtg~~ll~~ 263 (299)
|+|+|||||+.+++.+++.|-+ |++|||+| +..++.-.|||||||||||||+|.=
T Consensus 89 v~f~DIggLe~v~~~L~e~Vil--Plr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAK 145 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVIL--PLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAK 145 (386)
T ss_pred eehhhccchHHHHHHHHHHHhh--cccchhhhcccccccCCccceecCCCCchHHHHHH
Confidence 9999999999999999999999 99999999 4557788999999999999999874
No 45
>KOG0738|consensus
Probab=99.37 E-value=1.4e-13 Score=126.62 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=61.7
Q ss_pred HHHHHHHHhc----cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 194 AHFEEAMRFA----RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 194 ~Df~~AL~~~----~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.|+.++|++- .|+|+|+||-||+++|+-|.|.|.+ |+.+||.|.-..+-=-|+|+.||||||||||-
T Consensus 192 ~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvl--Pi~mPe~F~GirrPWkgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 192 ADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVL--PIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLA 262 (491)
T ss_pred HHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhh--hhhhHHHHhhcccccceeeeeCCCCCcHHHHH
Confidence 3777777764 4889999999999999999999999 99999999999999999999999999999984
No 46
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.37 E-value=2.2e-12 Score=131.81 Aligned_cols=60 Identities=27% Similarity=0.443 Sum_probs=49.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhh----------cCCeecccchhhh--hccccccHHHHHHHHHHHHH
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL--TMWFGESEANVRDIFDKVTM 78 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l----------~~~~i~i~~~~l~--~~~~g~~~~~i~~~f~~a~~ 78 (299)
.....++|+||||||||++++.||..+ +..++.+++..+. .++.|+.+..++.+|+.+..
T Consensus 201 ~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~ 272 (731)
T TIGR02639 201 RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEK 272 (731)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhc
Confidence 345689999999999999999999987 4567778887776 46788889999999987654
No 47
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.34 E-value=1.1e-13 Score=131.39 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=53.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.|.|+|+||||++..|+++.+.|+| |++||++|.. |+....|+|||||||||||+|.
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~--pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVEL--PLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHH--HhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 6899999999999999999999999 9999999975 7778889999999999999984
No 48
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.34 E-value=8.3e-13 Score=115.19 Aligned_cols=158 Identities=15% Similarity=0.218 Sum_probs=103.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccc-cHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGE-SEANVRDIFDKVTMENFRYAMGKSSP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~-~~~~i~~~f~~a~~~~~~~~~~~~~~ 90 (299)
++|.+.+|+++.|+|+||||||||+|+|++... .+.|.+++..+..+.-.. ..+.++.+|+ ....+.++
T Consensus 26 VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQ--------Dp~~SLnP 97 (252)
T COG1124 26 VSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQ--------DPYSSLNP 97 (252)
T ss_pred eeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEec--------CCccccCc
Confidence 678889999999999999999999999999665 466778876665431110 1122233332 22222233
Q ss_pred hhh-hHHHhhcCccchhhcCCCccHHHHHhhhcccCCH--HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SAL-RETIVEVPNITWEDIGGLEGVKRELQELVQDVDL--NYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 91 ~~~-~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l--~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
... .+.+.+- ... ...++..+|+..+++.|++ +.+.++++.|||||+|++|...++..-.+.
T Consensus 98 ~~tv~~~l~Ep-l~~----~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pkl---------- 162 (252)
T COG1124 98 RRTVGRILSEP-LRP----HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKL---------- 162 (252)
T ss_pred chhHHHHHhhh-hcc----CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCE----------
Confidence 222 2333221 111 3356778888899999999 567788899999999999987665543222
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
+..+|+....+...+..+.+-|.+.+.
T Consensus 163 -----------LIlDEptSaLD~siQa~IlnlL~~l~~ 189 (252)
T COG1124 163 -----------LILDEPTSALDVSVQAQILNLLLELKK 189 (252)
T ss_pred -----------EEecCchhhhcHHHHHHHHHHHHHHHH
Confidence 345566666677777777777777654
No 49
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.32 E-value=5.2e-12 Score=109.73 Aligned_cols=163 Identities=13% Similarity=0.206 Sum_probs=101.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC--C
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS--S 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~--~ 89 (299)
++|.|.+++.|.|+|++|+|||||+|+|++...+ +.+.+++.++... ..+.++++..... +..+..+. .
T Consensus 23 Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~----~~k~lr~~r~~iG---mIfQ~~nLv~r 95 (258)
T COG3638 23 VNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKL----KGKELRKLRRDIG---MIFQQFNLVPR 95 (258)
T ss_pred EeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhcc----chHHHHHHHHhce---eEeccCCcccc
Confidence 6788999999999999999999999999997654 5566777776654 3344444333211 11111111 1
Q ss_pred chhhhHHHhhc--CccchhhcCCCc--cHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEV--PNITWEDIGGLE--GVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRR 164 (299)
Q Consensus 90 ~~~~~~~l~~l--~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~ 164 (299)
......++... .+..+..+...+ ..+.++...++.+++.+.| .++..+|||++|++..+.++.--
T Consensus 96 ~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~---------- 165 (258)
T COG3638 96 LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQ---------- 165 (258)
T ss_pred cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcC----------
Confidence 11111222111 111222222333 3445566889999996665 77899999999998765433211
Q ss_pred HHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+-+..+|+....+|.+....++.|++.-
T Consensus 166 -----------pkiILADEPvasLDp~~a~~Vm~~l~~in 194 (258)
T COG3638 166 -----------PKIILADEPVASLDPESAKKVMDILKDIN 194 (258)
T ss_pred -----------CCEEecCCcccccChhhHHHHHHHHHHHH
Confidence 11244667777888899888888888764
No 50
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.32 E-value=2e-12 Score=113.41 Aligned_cols=158 Identities=18% Similarity=0.257 Sum_probs=102.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+..++.+.|+|||||||||++|+|.+.+. .+.+.+++.++.+...-+..+.+..+.+.. .+.+ .-
T Consensus 20 v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqi---gLFP------h~ 90 (309)
T COG1125 20 VNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQI---GLFP------HL 90 (309)
T ss_pred eeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhc---ccCC------Cc
Confidence 567889999999999999999999999999776 467888988887654333334444333321 1111 11
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH--H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL--N-YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l--~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
...+.+..+|...- ......++|+.+++..+++ . ...++++.+|||+.|++-...+++|-...
T Consensus 91 Tv~eNIa~VP~L~~---w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~i----------- 156 (309)
T COG1125 91 TVAENIATVPKLLG---WDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPI----------- 156 (309)
T ss_pred cHHHHHHhhhhhcC---CCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCe-----------
Confidence 12233333332220 1134567888899999888 2 45577799999999999888777664322
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
+..+++....++|++..+.+-+.+++
T Consensus 157 ----------lLMDEPFgALDpI~R~~lQ~e~~~lq 182 (309)
T COG1125 157 ----------LLMDEPFGALDPITRKQLQEEIKELQ 182 (309)
T ss_pred ----------EeecCCccccChhhHHHHHHHHHHHH
Confidence 22344555666777766666655554
No 51
>KOG0728|consensus
Probab=99.31 E-value=4.2e-13 Score=117.30 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=52.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.|.-+++-||||+.--++|.+.|++ |.||||||.+ |+..--|+|||||||||||||-
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeL--PvKHPELF~aLGIaQPKGvlLygppgtGktLla 198 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIEL--PVKHPELFEALGIAQPKGVLLYGPPGTGKTLLA 198 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhc--cccCHHHHHhcCCCCCcceEEecCCCCchhHHH
Confidence 3778899999999999999999999 9999999965 7888899999999999999984
No 52
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.30 E-value=2.5e-13 Score=131.98 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=58.0
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 193 RAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 193 ~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.++...-+-...|.|+|+|||||+..++.|++.|+| |++||++|.. |++...|+|||||||||||++-
T Consensus 165 ~~~~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~l--p~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 165 KAEVEDLVLEEVPDVTYADIGGLDSQIEQIRDAVEL--PFLHPELYREYDLKPPKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred HhHHhcceeecCCCCCHHHcCChHHHHHHHHHHHHH--HhhCHHHHHhccCCCCcceEEECCCCCcHHHHH
Confidence 334434344456889999999999999999999999 9999999975 8888999999999999999753
No 53
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.29 E-value=5.3e-12 Score=108.18 Aligned_cols=159 Identities=14% Similarity=0.274 Sum_probs=97.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-------Ceecccchhhhhcccc--ccHHHHHHHHHHHHHHHHhhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKGPELLTMWFG--ESEANVRDIFDKVTMENFRYA 84 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-------~~i~i~~~~l~~~~~g--~~~~~i~~~f~~a~~~~~~~~ 84 (299)
+++.++..+...|+||+||||||++|++.+.... +.+.+++.++.+..+. +..+.+..+|++..
T Consensus 26 i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn------- 98 (253)
T COG1117 26 INLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN------- 98 (253)
T ss_pred CceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC-------
Confidence 6778899999999999999999999999985542 5567788888764222 22334444444321
Q ss_pred hcCCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 85 MGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 85 ~~~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
.-+.+..+.+. +.-.+.. +. ....+++++..++...| +.|.+...++||||.|+||.+.+++.-.+
T Consensus 99 ---PFp~SIydNVa-yG~r~~g-~~-~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~Pe--- 169 (253)
T COG1117 99 ---PFPMSIYDNVA-YGLRLHG-IK-DKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPE--- 169 (253)
T ss_pred ---CCCchHHHHHH-HhHHhhc-cc-hHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCc---
Confidence 11111111110 0000000 00 12344555555554444 45666668999999999998665432111
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccCC
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRS 206 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~Ps 206 (299)
-+..+|+.+..+||+...+++-+.+.+..
T Consensus 170 ------------------VlLmDEPtSALDPIsT~kIEeLi~eLk~~ 198 (253)
T COG1117 170 ------------------VLLMDEPTSALDPISTLKIEELITELKKK 198 (253)
T ss_pred ------------------EEEecCcccccCchhHHHHHHHHHHHHhc
Confidence 24466777888999999999998888754
No 54
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.25 E-value=7.2e-12 Score=111.55 Aligned_cols=128 Identities=14% Similarity=0.172 Sum_probs=81.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.++.++.+.|.||||||||||+|+|++.+. .+.+.+++.++.+.. .+. .|+..++.++.......
T Consensus 21 ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~----~ke------lAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 21 LSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLS----PKE------LAKKLAYVPQSPSAPFG 90 (258)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcC----HHH------HhhhEEEeccCCCCCCC
Confidence 567889999999999999999999999999776 567889988876542 111 22333444544332222
Q ss_pred hhhHHHh---hcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhc-CCCCHHHHHHHHHHHHHH
Q psy13773 92 ALRETIV---EVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVT-NGFSGADLTEICQRACKL 152 (299)
Q Consensus 92 ~~~~~l~---~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t-~glSggDl~~Lv~~A~~~ 152 (299)
.....+. ..|+.-+-. ....+..+.++..++.+++..++.+. ..+|||++|++..+.++.
T Consensus 91 ~tV~d~V~~GR~p~~~~~~-~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALa 154 (258)
T COG1120 91 LTVYELVLLGRYPHLGLFG-RPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALA 154 (258)
T ss_pred cEEeehHhhcCCccccccc-CCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHh
Confidence 1111111 112211110 01122233566888999999998776 789999999988765443
No 55
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.23 E-value=1.3e-11 Score=107.83 Aligned_cols=160 Identities=18% Similarity=0.255 Sum_probs=97.6
Q ss_pred hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773 13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP 90 (299)
Q Consensus 13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~ 90 (299)
.++|.+.+++.+.|+||||||||||+++|++... .+.+.+++.++... .+..... |+.... .|..+....-+
T Consensus 23 ~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l----~~~~~~~-~R~~~i-GfvFQ~~nLl~ 96 (226)
T COG1136 23 DVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKL----SEKELAK-LRRKKI-GFVFQNFNLLP 96 (226)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcC----CHHHHHH-HHHHhE-EEECccCCCCC
Confidence 4788899999999999999999999999999665 45677887776544 2222222 221111 22222222222
Q ss_pred hhhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHH-HHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLN-YIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRER 166 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~-~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~ 166 (299)
.........+|..+ ...+ ...++...+++.+++. ... +.+..+||||.|+++.+.++..-..
T Consensus 97 ~ltv~ENv~lpl~~----~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~---------- 162 (226)
T COG1136 97 DLTVLENVELPLLI----AGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPK---------- 162 (226)
T ss_pred CCCHHHHHHhHHHH----cCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCC----------
Confidence 22111112222211 1122 4567777889999996 555 5578999999999887654443211
Q ss_pred HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+..+.+.-+.+.+.+.+.+.
T Consensus 163 -----------iilADEPTgnLD~~t~~~V~~ll~~~ 188 (226)
T COG1136 163 -----------IILADEPTGNLDSKTAKEVLELLREL 188 (226)
T ss_pred -----------eEEeeCccccCChHHHHHHHHHHHHH
Confidence 24455666676766777776666655
No 56
>KOG0727|consensus
Probab=99.22 E-value=1.1e-12 Score=114.96 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=53.8
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 203 ARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 203 ~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
-+|.|++.|||||+--|+++++++++ ||.|-+||.+ |+.---|+|+|||||||||.|-
T Consensus 148 ekpdvsy~diggld~qkqeireavel--plt~~~ly~qigidpprgvllygppg~gktml~ 206 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVEL--PLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLA 206 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhc--cchHHHHHHHhCCCCCcceEEeCCCCCcHHHHH
Confidence 36889999999999999999999999 9999999976 7777889999999999999875
No 57
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.22 E-value=1.4e-11 Score=114.38 Aligned_cols=127 Identities=20% Similarity=0.252 Sum_probs=85.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.+.|.|||||||||++|+||+... .+.|.+++.++....+ ..+.+..+|+. +++.+....
T Consensus 24 isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp--~kR~ig~VFQ~---YALFPHltV---- 94 (352)
T COG3842 24 ISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP--EKRPIGMVFQS---YALFPHMTV---- 94 (352)
T ss_pred ceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh--hhcccceeecC---cccCCCCcH----
Confidence 578889999999999999999999999999654 5778889988876322 34456666653 122221110
Q ss_pred hhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIR 155 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~ 155 (299)
.+. ..+. +. .....+ +.++|+.++++.+.+..++ ++++.+|||+.|+++.+.++..-.
T Consensus 95 --~~N-VafG--Lk-~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P 155 (352)
T COG3842 95 --EEN-VAFG--LK-VRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEP 155 (352)
T ss_pred --HHH-hhhh--hh-hcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCc
Confidence 010 1111 11 001122 3567999999999997776 556899999999998877665443
No 58
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.21 E-value=1.7e-12 Score=123.37 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=52.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.|+|+|+||||+++.++++.+.|++ |++||++|.+ |+....|+|||||||||||+|.
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~--pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVEL--PLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH--HhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 4789999999999999999999999 9999999864 6778889999999999999973
No 59
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.20 E-value=1.7e-11 Score=107.62 Aligned_cols=152 Identities=15% Similarity=0.183 Sum_probs=93.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.+.|+||||||||||+|.||+...+ +.+.+++..+... + ..+..+|+.... .+ -
T Consensus 22 i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p--~---~~~~~vFQ~~~L---lP-------W 86 (248)
T COG1116 22 INLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP--G---PDIGYVFQEDAL---LP-------W 86 (248)
T ss_pred ceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC--C---CCEEEEeccCcc---cc-------h
Confidence 5678899999999999999999999999997765 4566776655221 1 112222322110 00 0
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA 170 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~ 170 (299)
+..+..+.-.+........+..+|+..+++.|++... .+++..+|||+.|++....++..-.+
T Consensus 87 --~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~-------------- 150 (248)
T COG1116 87 --LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPK-------------- 150 (248)
T ss_pred --hhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCC--------------
Confidence 0001111000110001123445688899999999555 57778999999999887665543222
Q ss_pred CCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....+.+|.+.+.+-+.++
T Consensus 151 -------lLLlDEPFgALDalTR~~lq~~l~~l 176 (248)
T COG1116 151 -------LLLLDEPFGALDALTREELQDELLRL 176 (248)
T ss_pred -------EEEEcCCcchhhHHHHHHHHHHHHHH
Confidence 23355666777888888888777665
No 60
>KOG0726|consensus
Probab=99.20 E-value=2.6e-12 Score=114.57 Aligned_cols=57 Identities=23% Similarity=0.183 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeeec
Q psy13773 205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLMF 263 (299)
Q Consensus 205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~~ 263 (299)
|.-++.|||||+.--|+|.+++++ ||-|||+|.. |++---|+.|||+||||||||-=
T Consensus 180 P~Ety~diGGle~QiQEiKEsvEL--PLthPE~YeemGikpPKGVIlyG~PGTGKTLLAK 237 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVEL--PLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAK 237 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcC--CCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHH
Confidence 778899999999999999999999 9999999864 77777899999999999999964
No 61
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.20 E-value=2.7e-12 Score=123.00 Aligned_cols=57 Identities=19% Similarity=0.153 Sum_probs=52.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.|.++|+||||+++.+++|.+.+++ |+.||++|.+ |+....|+|||||||||||+|.
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~l--pl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVEL--PLTHPELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHh--hhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 4789999999999999999999999 9999999875 6778889999999999999985
No 62
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1e-11 Score=114.66 Aligned_cols=125 Identities=15% Similarity=0.242 Sum_probs=81.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
+++.+..++.+.|.|||||||||++|+||+... .+.+.|++.++....+ .++.+..+|+.- ++.+..
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P--~~R~iamVFQ~y---ALyPhm------ 90 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP--EKRGIAMVFQNY---ALYPHM------ 90 (338)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh--hHCCEEEEeCCc---cccCCC------
Confidence 567889999999999999999999999999765 5678888887765322 234455555421 111110
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HHHHhcCCCCHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YIAKVTNGFSGADLTEICQRACKL 152 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~LA~~t~glSggDl~~Lv~~A~~~ 152 (299)
+..+. +...+...-....+.++|++++.+.++++ .+.+++..+|||+.|+++...++.
T Consensus 91 tV~~N---iaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlV 149 (338)
T COG3839 91 TVYEN---IAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALV 149 (338)
T ss_pred cHHHH---hhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHh
Confidence 00111 11111110011245678899999999995 556778999999999988765443
No 63
>KOG0729|consensus
Probab=99.18 E-value=4.9e-12 Score=111.61 Aligned_cols=57 Identities=14% Similarity=0.115 Sum_probs=52.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
+|.|+++||||-.+--.++++.+++ ||.|||.|-. |+.---|||+||||||||||+-
T Consensus 171 kpdvty~dvggckeqieklrevve~--pll~perfv~lgidppkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVEL--PLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhc--cccCHHHHhhcCCCCCCceEEeCCCCCchhHHH
Confidence 6889999999999999999999999 9999998865 6777789999999999999974
No 64
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.18 E-value=3.1e-11 Score=108.66 Aligned_cols=159 Identities=17% Similarity=0.153 Sum_probs=101.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.|+.|+.+.++|.||+|||||+|++...-. .+.+.+++.++... ....++...+... .-.+...-
T Consensus 25 vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l----~~~~Lr~~R~~IG-----MIFQhFnLL 95 (339)
T COG1135 25 VSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTAL----SEAELRQLRQKIG-----MIFQHFNLL 95 (339)
T ss_pred ceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccC----ChHHHHHHHhhcc-----EEecccccc
Confidence 688899999999999999999999999998544 56788898777654 3444544433221 11111111
Q ss_pred -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
+........+|-.+.. ....+.++|+.++++.|++.+-+ .++..+||||.|++..+.+++.-.+.
T Consensus 96 ssrTV~~NvA~PLeiag--~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~i----------- 162 (339)
T COG1135 96 SSRTVFENVAFPLELAG--VPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKI----------- 162 (339)
T ss_pred ccchHHhhhhhhHhhcC--CCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCE-----------
Confidence 1111111222322222 22346678999999999996655 56689999999999887666543322
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
+..+|..+..+|=|.+.+.+-|+++.
T Consensus 163 ----------LL~DEaTSALDP~TT~sIL~LL~~In 188 (339)
T COG1135 163 ----------LLCDEATSALDPETTQSILELLKDIN 188 (339)
T ss_pred ----------EEecCccccCChHHHHHHHHHHHHHH
Confidence 22445555666666666666666654
No 65
>KOG0652|consensus
Probab=99.16 E-value=7e-12 Score=110.33 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=52.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 203 ARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 203 ~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.+|+-.++|||||+.--+++-+.|.+ |+.|||-|.+ |++---|+|+||||||||||+-
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVL--pmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVL--PMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMA 222 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhcc--ccccHHHHHhcCCCCCCceEeeCCCCCcHHHHH
Confidence 36889999999999999999999999 9999999976 5666779999999999999974
No 66
>KOG0744|consensus
Probab=99.16 E-value=1.7e-10 Score=104.27 Aligned_cols=61 Identities=36% Similarity=0.615 Sum_probs=53.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhc---------CCeecccchhhhhccccccHHHHHHHHHHHHHH
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPELLTMWFGESEANVRDIFDKVTME 79 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~---------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~ 79 (299)
.-.+.+||+||||+|||+|+|+||..+. ...++|+++.+.++|++++.+.+.++|++....
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQEL 244 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4567899999999999999999999875 256889999999999999999999999987643
No 67
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.15 E-value=1.8e-11 Score=118.52 Aligned_cols=163 Identities=16% Similarity=0.246 Sum_probs=103.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+|+.+.|+|+||||||||+|+|++...+ +.+.+++.+ .....++ .+...... ...|+.+....++.
T Consensus 310 VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~~~~~----~~~~r~~~-QmvFQdp~~SLnPr 383 (539)
T COG1123 310 VSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDLTGGE----LRRLRRRI-QMVFQDPYSSLNPR 383 (539)
T ss_pred eeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-cccccch----hhhhhhhe-EEEEeCcccccCcc
Confidence 6788999999999999999999999999997764 567777766 3322111 11111111 01233333333333
Q ss_pred hhh-HHHhhcCccchhhcCCCccHHHHHhhhcccCCH--HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALR-ETIVEVPNITWEDIGGLEGVKRELQELVQDVDL--NYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 92 ~~~-~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l--~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
... ..+.+ +..+... ......++|+..+++.+++ ..+.++++.|||||.|+++.+.++..-.+.
T Consensus 384 ~tV~~~i~e-pL~~~~~-~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~l----------- 450 (539)
T COG1123 384 MTVGDILAE-PLRIHGG-GSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKL----------- 450 (539)
T ss_pred ccHHHHHHh-HHhhhcc-cchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCE-----------
Confidence 222 22222 1111110 1124455678888999998 357788999999999999987666543332
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
+..+|+....++.+...+.+-|++.+.
T Consensus 451 ----------li~DEp~SaLDvsvqa~VlnLl~~lq~ 477 (539)
T COG1123 451 ----------LILDEPVSALDVSVQAQVLNLLKDLQE 477 (539)
T ss_pred ----------EEecCCccccCHHHHHHHHHHHHHHHH
Confidence 345667777788888888888888764
No 68
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.07 E-value=1.7e-10 Score=97.25 Aligned_cols=157 Identities=17% Similarity=0.200 Sum_probs=95.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhccccc---cHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGE---SEANVRDIFDKVTMENFRYAMGKS 88 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~---~~~~i~~~f~~a~~~~~~~~~~~~ 88 (299)
++|.+.+++.+.|.||||+|||||+|.|..+..+ +.+.+++.++....-.+ ..+.+..+|+.-+ +...+
T Consensus 21 vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~r---LL~~~--- 94 (223)
T COG2884 21 VSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR---LLPDR--- 94 (223)
T ss_pred ceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecc---ccccc---
Confidence 6788899999999999999999999999997764 66778888776531111 1222222333211 01100
Q ss_pred CchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 89 SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 89 ~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
.......++..+-. ....+.++|+.++++.|++..- ...+..+|||++|+++.+.+..-
T Consensus 95 ----tvyeNVA~pL~v~G--~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~-------------- 154 (223)
T COG2884 95 ----TVYENVALPLRVIG--KPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN-------------- 154 (223)
T ss_pred ----hHhhhhhhhhhccC--CCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc--------------
Confidence 00000111111100 1234667889999999999554 46668999999999886543321
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.|. .+..+|+..+.++-+..++..-++++
T Consensus 155 ----~P~---vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 155 ----QPA---VLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred ----CCC---eEeecCCCCCCChHHHHHHHHHHHHH
Confidence 111 24456666777766666666666665
No 69
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.05 E-value=2.6e-11 Score=114.36 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=51.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.|.|+|+||+|+++.++++.+.+.+ |++||++|.. |+....|+|+|||||||||+|.
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~--~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVEL--PLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHH--HhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 4889999999999999999999999 9999998864 5566778999999999999886
No 70
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.05 E-value=8.7e-11 Score=106.63 Aligned_cols=181 Identities=19% Similarity=0.216 Sum_probs=112.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-C------CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-A------NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~------~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.+.|+|.||||||+++++|.+.+. . +.+.+++.++.+. +++.+++++.......|+....
T Consensus 24 vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l----~~~~~~~iRG~~I~mIfQ~p~~ 99 (316)
T COG0444 24 VSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL----SEKELRKIRGKEIAMIFQDPMT 99 (316)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC----CHHHHHhhcCceEEEEEcCchh
Confidence 678899999999999999999999999999886 2 3455677776554 3333333332221112333333
Q ss_pred CCCchhhh-HHHhhcCccchhhcCCCccHHHHHhhhcccCCHH----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALR-ETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN----YIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~-~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
..++.... ..+.+....-.. ..+..+..+|+..+++.|++. .+..+++.||||++|+++.+.++.+-.+
T Consensus 100 sLnPv~~Ig~Qi~E~l~~h~~-~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~----- 173 (316)
T COG0444 100 SLNPVMTIGDQIAEVLRLHGK-GLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPK----- 173 (316)
T ss_pred hcCChhhHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCC-----
Confidence 33332211 222221110000 001123466778899999983 5678889999999999998776654222
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccCC------CCHHHHHHHHHHHH
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRS------VNDADIRKYEMFAQ 220 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~Ps------Vsw~DIggL~~vk~ 220 (299)
.+..+|++...++.++..+.+-|++.+.. .==+|+|-..++.+
T Consensus 174 ----------------LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aD 222 (316)
T COG0444 174 ----------------LLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIAD 222 (316)
T ss_pred ----------------EEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcc
Confidence 24566777778888888888888887642 11156665555554
No 71
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.04 E-value=1.3e-09 Score=111.07 Aligned_cols=59 Identities=24% Similarity=0.387 Sum_probs=41.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhh----------cCCeecccchhhh--hccccccHHHHHHHHHHHH
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL--TMWFGESEANVRDIFDKVT 77 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l----------~~~~i~i~~~~l~--~~~~g~~~~~i~~~f~~a~ 77 (299)
.....++|+||||||||++++.++..+ +..++.++...+. ..+.|+.+..++.+|..+.
T Consensus 205 ~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~ 275 (758)
T PRK11034 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE 275 (758)
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHH
Confidence 345678999999999999999999864 1233344444443 3566777888888887654
No 72
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.04 E-value=2.2e-10 Score=111.40 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=64.8
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHH-------
Q psy13773 125 VDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFE------- 197 (299)
Q Consensus 125 v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~------- 197 (299)
-+++.+++.+.|+|-.++++++..+.. +.. .++.+++.
T Consensus 165 ~~~~~l~~~~~gls~~~~~~~~~~~~~----~~~-------------------------------~~~~~~~~~i~~~k~ 209 (489)
T CHL00195 165 ELLENLTRACQGLSLERIRRVLSKIIA----TYK-------------------------------TIDENSIPLILEEKK 209 (489)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----HcC-------------------------------CCChhhHHHHHHHHH
Confidence 345788999999999999998876421 100 11112111
Q ss_pred HH------HHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 198 EA------MRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 198 ~A------L~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
+. ++-..+.++|+||||++.+|+.+.+.... -.+... .-|++..-|||||||||||||++-
T Consensus 210 q~~~~~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~--~~~~~~--~~gl~~pkGILL~GPpGTGKTllA 276 (489)
T CHL00195 210 QIISQTEILEFYSVNEKISDIGGLDNLKDWLKKRSTS--FSKQAS--NYGLPTPRGLLLVGIQGTGKSLTA 276 (489)
T ss_pred HHHhhhccccccCCCCCHHHhcCHHHHHHHHHHHHHH--hhHHHH--hcCCCCCceEEEECCCCCcHHHHH
Confidence 11 12223679999999999999998875332 111111 235667789999999999999863
No 73
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.04 E-value=1.8e-10 Score=107.69 Aligned_cols=160 Identities=13% Similarity=0.152 Sum_probs=95.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.+.|+||||||||||+|+|++...+ +.+.+++.++... ....++.+.. ...+.++......
T Consensus 24 vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~----~~~~l~~~r~---~Ig~v~Q~~~l~~~ 96 (343)
T TIGR02314 24 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTL----SNSELTKARR---QIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC----CHHHHHHHhc---CEEEEECCcccccc
Confidence 4677899999999999999999999999997764 6677777665432 1111211111 0011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+. ++..... ....+..+|+..+++.+++... ..+...||||++|++....++..-.+
T Consensus 97 ~tv~eni~-~~~~~~~--~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~------------- 160 (343)
T TIGR02314 97 RTVFGNVA-LPLELDN--TPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK------------- 160 (343)
T ss_pred CcHHHHHH-HHHHHcC--CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC-------------
Confidence 11112111 1110000 0112345677788888998554 45668899999999987765554221
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++-+.+.+.+.|++..
T Consensus 161 --------iLLlDEPts~LD~~t~~~i~~lL~~l~ 187 (343)
T TIGR02314 161 --------VLLCDEATSALDPATTQSILELLKEIN 187 (343)
T ss_pred --------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 244566677777888888888777763
No 74
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.02 E-value=7.1e-10 Score=100.20 Aligned_cols=131 Identities=18% Similarity=0.130 Sum_probs=85.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
.+|.+..++.+.|.|-||||||||+|+|.+... .+.+.+++.++... ..+.++++..+.....|+. ..--
T Consensus 47 ~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~----~~~~Lr~~Rr~~~sMVFQ~----FaLl 118 (386)
T COG4175 47 ASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKL----SAAELRELRRKKISMVFQS----FALL 118 (386)
T ss_pred ceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcC----CHHHHHHHHhhhhhhhhhh----hccc
Confidence 578889999999999999999999999999765 56788898888765 4455555444332222211 1111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKL 152 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~ 152 (299)
..+.++......+.-.-....++++|..+.++.++++..+ ++++.+|||..|++-.+.++.
T Consensus 119 PhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla 180 (386)
T COG4175 119 PHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALA 180 (386)
T ss_pred cchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHc
Confidence 1112222221111110011235566778999999997765 667899999999998766554
No 75
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.01 E-value=6.4e-10 Score=98.75 Aligned_cols=158 Identities=12% Similarity=0.116 Sum_probs=95.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC--
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-- 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-- 89 (299)
++|.+.+++.+.|+||||+|||||+|+|.+.+.+ +.+.+.+.......... .+ ...++....+
T Consensus 23 i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~---~I----------gYVPQ~~~~d~~ 89 (254)
T COG1121 23 ISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRL---RI----------GYVPQKSSVDRS 89 (254)
T ss_pred cEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCC---eE----------EEcCcccccCCC
Confidence 5677899999999999999999999999997765 44555544321110000 00 1112211111
Q ss_pred -chhhhHHHhhcCccchhhcCC-CccHHHHHhhhcccCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 -PSALRETIVEVPNITWEDIGG-LEGVKRELQELVQDVDLNYIAKVT-NGFSGADLTEICQRACKLAIRQSIETEIRRER 166 (299)
Q Consensus 90 -~~~~~~~l~~l~~~l~~~~~r-~p~~~~R~~~l~~~v~l~~LA~~t-~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~ 166 (299)
+....+++..-...-...+.+ ....+++++.+++.+++..++++. ..+||||+|++..+.++..-.
T Consensus 90 fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p----------- 158 (254)
T COG1121 90 FPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNP----------- 158 (254)
T ss_pred CCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCC-----------
Confidence 111122221110000011111 123356777999999998887655 779999999998765443211
Q ss_pred HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
..+..+|+...+++-+..+|.+-|++.+.
T Consensus 159 ----------~lllLDEP~~gvD~~~~~~i~~lL~~l~~ 187 (254)
T COG1121 159 ----------DLLLLDEPFTGVDVAGQKEIYDLLKELRQ 187 (254)
T ss_pred ----------CEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 12446677777788888889888888765
No 76
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.01 E-value=7.9e-10 Score=91.67 Aligned_cols=119 Identities=16% Similarity=0.253 Sum_probs=74.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+|+.++|.||+|||||||+|++|....+ +.+.+.+.++....+..-...+ +.|.+....-..
T Consensus 22 isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~V----------sY~~Q~paLfg~ 91 (223)
T COG4619 22 ISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQV----------SYCAQTPALFGD 91 (223)
T ss_pred eeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHH----------HHHHcCcccccc
Confidence 6788899999999999999999999999997764 5666777766543221111111 223333222111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH--HHHHHhcCCCCHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL--NYIAKVTNGFSGADLTEICQ 147 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l--~~LA~~t~glSggDl~~Lv~ 147 (299)
..... -.+||.+.. +.|+ ..++..++.++++ ..|.+....+|||+.|++..
T Consensus 92 tVeDN-lifP~~~r~---rr~d-r~aa~~llar~~l~~~~L~k~it~lSGGE~QriAl 144 (223)
T COG4619 92 TVEDN-LIFPWQIRN---RRPD-RAAALDLLARFALPDSILTKNITELSGGEKQRIAL 144 (223)
T ss_pred chhhc-cccchHHhc---cCCC-hHHHHHHHHHcCCchhhhcchhhhccchHHHHHHH
Confidence 11111 123443322 3343 3455677778887 45778889999999998654
No 77
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.00 E-value=2.5e-10 Score=107.46 Aligned_cols=159 Identities=13% Similarity=0.183 Sum_probs=95.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|+||||||||||+++|++...+ +.+.+++.++... ....++.+... ...+.++....-+.
T Consensus 12 vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~----~~~~~~~~rr~--~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 12 ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ----SPVELREVRRK--KIGMVFQQFALFPH 85 (363)
T ss_pred eEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcC----CHHHHHHHHhC--cEEEEECCCcCCCC
Confidence 5778899999999999999999999999998764 5677887766532 11222111110 00112211111111
Q ss_pred -hhhHHHhhcCccchhhcC-CCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 -ALRETIVEVPNITWEDIG-GLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 92 -~~~~~l~~l~~~l~~~~~-r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
...+.+..... ... ......+|+..+++.+++.. +.+....||||++|+++...++..-.+
T Consensus 86 ~TV~eNi~~~~~----~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~------------ 149 (363)
T TIGR01186 86 MTILQNTSLGPE----LLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPD------------ 149 (363)
T ss_pred CCHHHHHHHHHH----HcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC------------
Confidence 11122211000 001 11234567778888899955 456668899999999987765544221
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.+.+.+.+.
T Consensus 150 ---------iLLlDEP~saLD~~~r~~l~~~l~~l 175 (363)
T TIGR01186 150 ---------ILLMDEAFSALDPLIRDSMQDELKKL 175 (363)
T ss_pred ---------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 23455666777788888888777665
No 78
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.99 E-value=3.5e-11 Score=106.48 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=97.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhh-ccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT-MWFGESEANVRDIFDKVTMENFRYAMGKSSP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~-~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~ 90 (299)
+++.+.+++.++|+|+||||||||++.+++.+.+ +.+.+++.++.. ....+..+.+..+|+.+.. ..-.
T Consensus 23 v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~--------q~~~ 94 (235)
T COG1122 23 VSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDD--------QLFG 94 (235)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECccc--------cccc
Confidence 5778899999999999999999999999998875 456666655432 1000011111112221111 1001
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.--+..+ -....+..+|+...+..+++..+. +.+..+|||+.|+++.+.++..-.+
T Consensus 95 ~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~------------- 158 (235)
T COG1122 95 PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPE------------- 158 (235)
T ss_pred CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCC-------------
Confidence 11111111001000 011224678888999999996665 5558999999999998776554222
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
-+..+|+....++-..+++.+-+++.+.
T Consensus 159 --------iliLDEPta~LD~~~~~~l~~~l~~L~~ 186 (235)
T COG1122 159 --------ILLLDEPTAGLDPKGRRELLELLKKLKE 186 (235)
T ss_pred --------EEEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 2446677777788888888888888753
No 79
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.98 E-value=1.3e-09 Score=95.21 Aligned_cols=162 Identities=15% Similarity=0.158 Sum_probs=99.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.+.+.||||||||||+|+|.+.+.+ +.+.+++.++... ++....+++++ ..++.+....-++
T Consensus 27 v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~l----s~~~~~~ir~r---~GvlFQ~gALFss 99 (263)
T COG1127 27 VDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQL----SEEELYEIRKR---MGVLFQQGALFSS 99 (263)
T ss_pred ceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhcc----CHHHHHHHHhh---eeEEeeccccccc
Confidence 5678899999999999999999999999998864 6688888887654 23222222221 1111111111111
Q ss_pred hhhHHHhhcCccchhhcCCCccH--HHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGV--KRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~--~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
........+|. .+ -.++|.. ++.+..-++.|++. . ..+++..+|||..+++..+.++..-
T Consensus 100 ltV~eNVafpl--re-~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald------------- 163 (263)
T COG1127 100 LTVFENVAFPL--RE-HTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD------------- 163 (263)
T ss_pred cchhHhhheeh--Hh-hccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC-------------
Confidence 11000011110 00 0123333 33444667788883 3 4577789999999997655443321
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhccCC
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRS 206 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~Ps 206 (299)
| .-+..+|+..-.+||+...|.+-+.+.+.+
T Consensus 164 -----P---ell~~DEPtsGLDPI~a~~~~~LI~~L~~~ 194 (263)
T COG1127 164 -----P---ELLFLDEPTSGLDPISAGVIDELIRELNDA 194 (263)
T ss_pred -----C---CEEEecCCCCCCCcchHHHHHHHHHHHHHh
Confidence 1 135577788888999999999999888753
No 80
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.98 E-value=5.5e-10 Score=97.57 Aligned_cols=160 Identities=11% Similarity=0.114 Sum_probs=93.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||||||||+++|++...+ +.+.+++.++... .......+.+ ...+.++......
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~~~~~---~i~~~~q~~~~~~~ 94 (216)
T TIGR00960 22 LNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRL----RGREIPFLRR---HIGMVFQDHRLLSD 94 (216)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhc----ChhHHHHHHH---hceEEecCcccccc
Confidence 5677899999999999999999999999997754 5566666554321 0011111111 0011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.. ...... .......+++..+++.+++... ......||+|++|+++...++..-.+
T Consensus 95 ~tv~e~l~~-~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~------------- 158 (216)
T TIGR00960 95 RTVYDNVAF-PLRIIG--VPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPP------------- 158 (216)
T ss_pred ccHHHHHHH-HHHhcC--CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 111122110 000000 0011234567778888888654 45568899999999987665543221
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|.+.+
T Consensus 159 --------llllDEPt~~LD~~~~~~l~~~l~~~~ 185 (216)
T TIGR00960 159 --------LLLADEPTGNLDPELSRDIMRLFEEFN 185 (216)
T ss_pred --------EEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 244667777888888888988888763
No 81
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=2.9e-10 Score=106.87 Aligned_cols=155 Identities=12% Similarity=0.182 Sum_probs=92.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.+.|.||||||||||+|+||+...+ +.+.+++.++..... ..+.+..+|+. ....+
T Consensus 23 vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~----------~~lfp~ 90 (356)
T PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP--ADRDIAMVFQN----------YALYPH 90 (356)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCC----------ccccCC
Confidence 5678899999999999999999999999997654 567777776643210 01111111211 11111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.. ...... ....+..+|+..+++.+++..+. +....||||++|+++...++..-.+
T Consensus 91 ~tv~eNi~~-~~~~~~--~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~------------- 154 (356)
T PRK11650 91 MSVRENMAY-GLKIRG--MPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPA------------- 154 (356)
T ss_pred CCHHHHHHh-HHhhcC--CCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 111111110 000000 01123456777888888996654 5568899999999987765543221
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++-+.+.+.+.|++++
T Consensus 155 --------llLLDEP~s~LD~~~r~~l~~~l~~l~ 181 (356)
T PRK11650 155 --------VFLFDEPLSNLDAKLRVQMRLEIQRLH 181 (356)
T ss_pred --------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 244556666667777777777776653
No 82
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.96 E-value=2.4e-09 Score=89.93 Aligned_cols=121 Identities=15% Similarity=0.169 Sum_probs=80.2
Q ss_pred cCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA 92 (299)
Q Consensus 15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~ 92 (299)
++.+..++.+.|.||+|+|||||++.||+-.. .+.+.|++.+.....+ .++-+..+|++.....
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P--~~RPVSmlFQEnNLFa------------ 84 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--AERPVSMLFQENNLFA------------ 84 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc--ccCChhhhhhccccch------------
Confidence 56678999999999999999999999999654 5667788887765433 3445666776422110
Q ss_pred hhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HHHHHhcCCCCHHHHHHHHHHH
Q psy13773 93 LRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NYIAKVTNGFSGADLTEICQRA 149 (299)
Q Consensus 93 ~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~LA~~t~glSggDl~~Lv~~A 149 (299)
-..+-..+--.+.+.+.-....+++++.++..+++ ..+.+.+..+|||+.|+++.+.
T Consensus 85 HLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALAR 142 (231)
T COG3840 85 HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALAR 142 (231)
T ss_pred hhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHH
Confidence 00111112122223222223456677788999999 4566777899999999987554
No 83
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.95 E-value=6.5e-10 Score=97.17 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=92.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||||||||+++|++.+.+ +.+.+++.++.... ......... ....+.++......
T Consensus 23 ~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~----~~~~~~~~~--~~i~~~~q~~~~~~~ 96 (218)
T cd03255 23 VSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLS----EKELAAFRR--RHIGFVFQSFNLLPD 96 (218)
T ss_pred eEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcc----hhHHHHHHh--hcEEEEeeccccCCC
Confidence 4677899999999999999999999999998754 55666665443210 000000000 00011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+... ..... .......+++..+++.+++.. +.+....||+|++|++....++..-.+
T Consensus 97 ~tv~e~l~~~-~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~------------- 160 (218)
T cd03255 97 LTALENVELP-LLLAG--VPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK------------- 160 (218)
T ss_pred CcHHHHHHHH-HhhcC--CCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC-------------
Confidence 1111221110 00000 001123456667788888854 455668899999999987655443211
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|++..
T Consensus 161 --------lllLDEP~~~LD~~~~~~l~~~l~~~~ 187 (218)
T cd03255 161 --------IILADEPTGNLDSETGKEVMELLRELN 187 (218)
T ss_pred --------EEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 244667777888888899999888763
No 84
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=4.4e-10 Score=104.52 Aligned_cols=162 Identities=14% Similarity=0.201 Sum_probs=95.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG- 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~- 86 (299)
++|.+.+++.+.|+|+||||||||+++|++.+. .+.+.+++.++... ..+..+.+... ...+.++..
T Consensus 26 vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~----~~~~~~~~r~~--~i~~v~Q~~~ 99 (326)
T PRK11022 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRI----SEKERRNLVGA--EVAMIFQDPM 99 (326)
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcC----CHHHHHHHhCC--CEEEEecCch
Confidence 568889999999999999999999999999764 35567777765432 11222211100 001111111
Q ss_pred -CCCch-hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 -KSSPS-ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN----YIAKVTNGFSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 87 -~~~~~-~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
...+. .....+.+....... ....+..+++..+++.+++. .+......||||++|+++...++..-.+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~--~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~---- 173 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQG--GNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPK---- 173 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCC----
Confidence 01111 111111110000000 01123345677788888883 3556778999999999997765554221
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+...+.+.|++.+
T Consensus 174 -----------------llilDEPts~LD~~~~~~il~lL~~l~ 200 (326)
T PRK11022 174 -----------------LLIADEPTTALDVTIQAQIIELLLELQ 200 (326)
T ss_pred -----------------EEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 244667777778888888888887764
No 85
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.94 E-value=1e-09 Score=97.75 Aligned_cols=90 Identities=20% Similarity=0.361 Sum_probs=70.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+..++.+.|+|.|||||||+.|+|.+...+ +.+.+++.++....
T Consensus 32 Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~------------------------------ 81 (268)
T COG4608 32 VSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS------------------------------ 81 (268)
T ss_pred eeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc------------------------------
Confidence 7889999999999999999999999999998775 55666665543321
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH--HHHHHhcCCCCHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL--NYIAKVTNGFSGADLTEICQRACKL 152 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l--~~LA~~t~glSggDl~~Lv~~A~~~ 152 (299)
.....+|+..+++.+++ +.+.+.++.|||||+|++..+.++.
T Consensus 82 -------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALa 125 (268)
T COG4608 82 -------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALA 125 (268)
T ss_pred -------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHh
Confidence 12345566777788877 5677888999999999998766544
No 86
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.93 E-value=4.2e-10 Score=109.17 Aligned_cols=164 Identities=18% Similarity=0.238 Sum_probs=107.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC------CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA------NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK 87 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~------~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~ 87 (299)
++|.+.+|+.+.|+|.|||||||++++|.+.+.. +.+.+++.+++.. +++..+.++.......|+.....
T Consensus 28 vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l----~~~~~r~~rg~~Ia~i~Q~p~~s 103 (539)
T COG1123 28 VSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL----SEREMRKLRGKRIAMIFQDPMTS 103 (539)
T ss_pred ceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC----CHHHHHHhccccEEEEecCchhh
Confidence 6888999999999999999999999999997764 3455677666554 34444444433222233333333
Q ss_pred CCchhh-hHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH--H-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 88 SSPSAL-RETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY--I-AKVTNGFSGADLTEICQRACKLAIRQSIETEIR 163 (299)
Q Consensus 88 ~~~~~~-~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~--L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~ 163 (299)
.++... ...+.++...-.. ....+...|+.++++.+++.+ . ..+++.||||++|+++.+.++..-.
T Consensus 104 lnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P-------- 173 (539)
T COG1123 104 LNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKP-------- 173 (539)
T ss_pred cCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCC--------
Confidence 343222 2333332111110 002345667778999998832 2 3478999999999999876554322
Q ss_pred HHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 164 REREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|++-..++.++.++.++|++.+
T Consensus 174 -------------~LLIaDEPTTaLDvt~q~qIL~llk~l~ 201 (539)
T COG1123 174 -------------KLLIADEPTTALDVTTQAQILDLLKDLQ 201 (539)
T ss_pred -------------CEEEECCCccccCHHHHHHHHHHHHHHH
Confidence 1355777778888999999999999987
No 87
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.93 E-value=4.5e-10 Score=104.58 Aligned_cols=162 Identities=14% Similarity=0.191 Sum_probs=94.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-----CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG-- 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-----~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~-- 86 (299)
++|.+.+++.++|+|+||||||||+++|++.+. .+.+.+++.++... ....++.+... ...+.++..
T Consensus 35 vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~----~~~~~~~~r~~--~i~~v~Q~~~~ 108 (330)
T PRK09473 35 LNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL----PEKELNKLRAE--QISMIFQDPMT 108 (330)
T ss_pred eEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcC----CHHHHHHHhcC--CEEEEEcCchh
Confidence 567889999999999999999999999999875 45677777766432 12222211100 001111110
Q ss_pred CCCch-hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPS-ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN----YIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~-~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
...+. ...+.+.+... .... ....+..+++..+++.+++. .+......||||++|+++...++..-.+
T Consensus 109 ~l~p~~~v~~~i~~~~~-~~~~-~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~----- 181 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLM-LHKG-MSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPK----- 181 (330)
T ss_pred hcCCCCCHHHHHHHHHH-HhcC-CCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCC-----
Confidence 01111 11111111000 0000 01123345666777777763 2345778999999999987765543221
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+..++.+.|++.+
T Consensus 182 ----------------llilDEPts~LD~~~~~~i~~lL~~l~ 208 (330)
T PRK09473 182 ----------------LLIADEPTTALDVTVQAQIMTLLNELK 208 (330)
T ss_pred ----------------EEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 244667777778888888888887764
No 88
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.93 E-value=4.4e-10 Score=105.56 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=91.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|+||||||||||+|+||+...+ +.+.+++.++..... ..+.+..+|+ ....-+
T Consensus 23 vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~--~~r~ig~v~Q----------~~~lfp~ 90 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP--QKRDYGIVFQ----------SYALFPN 90 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeC----------CcccCCC
Confidence 5778889999999999999999999999997754 667777766542110 0111111121 111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+. +. +...-....+..+|+..+++.+++..+. +....||||++|+++...++..-.+
T Consensus 91 ~tv~eNi~-~~--~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~------------- 154 (353)
T TIGR03265 91 LTVADNIA-YG--LKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPG------------- 154 (353)
T ss_pred CcHHHHHH-HH--HHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 11111111 00 0000001123456778888999996554 5668899999999987765554221
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....+..+.+.+...|++.
T Consensus 155 --------llLLDEP~s~LD~~~r~~l~~~L~~l 180 (353)
T TIGR03265 155 --------LLLLDEPLSALDARVREHLRTEIRQL 180 (353)
T ss_pred --------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 23355566666666777777776665
No 89
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.93 E-value=8.1e-10 Score=99.52 Aligned_cols=129 Identities=17% Similarity=0.229 Sum_probs=79.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhcc-ccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMW-FGESEANVRDIFDKVTMENFRYAMGKSSP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~-~g~~~~~i~~~f~~a~~~~~~~~~~~~~~ 90 (299)
+++.|+.++.+.|+||||||||||+|+||+...+ +.|.+++..+.+.. ....++++.-+|+... +.+..
T Consensus 21 i~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA---LF~Hm----- 92 (345)
T COG1118 21 ISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYA---LFPHM----- 92 (345)
T ss_pred ceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechh---hcccc-----
Confidence 6788899999999999999999999999997764 56777776333211 1112233333343221 11100
Q ss_pred hhhhHHHhhcCccchhhcCC--CccHHHHHhhhcccCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGG--LEGVKRELQELVQDVDLNYIAK-VTNGFSGADLTEICQRACKLAI 154 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r--~p~~~~R~~~l~~~v~l~~LA~-~t~glSggDl~~Lv~~A~~~a~ 154 (299)
+..+ ++...+.-...+ ....+.|+.++++.+.++.+++ ++..+||||.|+++.+.++.+-
T Consensus 93 -tVa~---NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~e 155 (345)
T COG1118 93 -TVAD---NIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVE 155 (345)
T ss_pred -hHHh---hhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcC
Confidence 0000 000000000011 2355677889999999999985 5589999999999877666543
No 90
>KOG0651|consensus
Probab=98.92 E-value=4.1e-10 Score=101.38 Aligned_cols=76 Identities=14% Similarity=0.024 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee------ccCCCCCCCCCCCCCC
Q psy13773 206 SVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM------FPSNPNQSQSGGPNSA 278 (299)
Q Consensus 206 sVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~------~~~~~~~~~~~~~~~~ 278 (299)
.++++.|||+.+...+|+|-|++ |++.|+||-. |++---|+|+|||||||||||- +--||--..+|.--+.
T Consensus 128 ~~s~~~~ggl~~qirelre~iel--pl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIEL--PLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEe--eccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 49999999999999999999999 9999999999 8888899999999999999974 3345544444444444
Q ss_pred CCCCC
Q psy13773 279 PANES 283 (299)
Q Consensus 279 ~~~~~ 283 (299)
-+.||
T Consensus 206 yiGEs 210 (388)
T KOG0651|consen 206 YIGES 210 (388)
T ss_pred hcccH
Confidence 44443
No 91
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.92 E-value=6e-10 Score=103.79 Aligned_cols=162 Identities=17% Similarity=0.223 Sum_probs=94.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~ 89 (299)
++|.+.+++.++|+|+||||||||+++|++.+. .+.+.+++.++... ....++.+.. ...+..+.. ...
T Consensus 40 vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~----~~~~~~~~r~---~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 40 VTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGM----KDDEWRAVRS---DIQMIFQDPLASLN 112 (331)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcC----CHHHHHHHhC---ceEEEecCchhhcC
Confidence 577889999999999999999999999999775 46677777766432 1111111111 001111110 011
Q ss_pred c-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 P-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER 166 (299)
Q Consensus 90 ~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~ 166 (299)
+ ....+.+.......... ....+..+++..+++.+++ .. +.+....||||++|+++...++..-.+
T Consensus 113 p~~tv~~~i~~~l~~~~~~-~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~---------- 181 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPK-LSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPK---------- 181 (331)
T ss_pred CCCCHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCC----------
Confidence 1 11112221100000000 0112334566677888888 43 456778999999999988766554221
Q ss_pred HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+...+.+.|++.+
T Consensus 182 -----------llilDEPts~LD~~~~~~i~~lL~~l~ 208 (331)
T PRK15079 182 -----------LIICDEPVSALDVSIQAQVVNLLQQLQ 208 (331)
T ss_pred -----------EEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 244666777777788888888877764
No 92
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.91 E-value=1.4e-09 Score=94.69 Aligned_cols=160 Identities=13% Similarity=0.146 Sum_probs=91.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||||||||+++|++.+.+ +.+.+++.++... .......+.. ...+.++......
T Consensus 20 ~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~----~~~~~~~~~~---~i~~v~q~~~~~~~ 92 (214)
T cd03292 20 INISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDL----RGRAIPYLRR---KIGVVFQDFRLLPD 92 (214)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccC----CHHHHHHHHH---heEEEecCchhccC
Confidence 4677889999999999999999999999998654 5566666554321 1111111100 0011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+... ..... .......+++..+++.+++... ......||+|++|+++...++..-.+
T Consensus 93 ~t~~~~l~~~-~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~------------- 156 (214)
T cd03292 93 RNVYENVAFA-LEVTG--VPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPT------------- 156 (214)
T ss_pred CcHHHHHHHH-HHHcC--CCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCC-------------
Confidence 1111111110 00000 0011234456677777888554 45568899999999987665543111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|++.+
T Consensus 157 --------llllDEPt~~LD~~~~~~~~~~l~~~~ 183 (214)
T cd03292 157 --------ILIADEPTGNLDPDTTWEIMNLLKKIN 183 (214)
T ss_pred --------EEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 244667777788888888988888763
No 93
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.91 E-value=6.8e-10 Score=101.74 Aligned_cols=155 Identities=21% Similarity=0.253 Sum_probs=97.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|.||||+|||||+|+|++...+ +.+.+++.+.... ...++ +. ..+.++.....+.
T Consensus 24 vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-----~~~~~---~~---igy~~~~~~~~~~ 92 (293)
T COG1131 24 VSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-----PAKVR---RR---IGYVPQEPSLYPE 92 (293)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-----HHHHH---hh---eEEEccCCCCCcc
Confidence 5778899999999999999999999999998765 5566676554321 01111 10 0122211111111
Q ss_pred -hhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 -ALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 92 -~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
+..+.+.-+ ..+...+ ...+|++.+++.+++...+ ++..+||+|++|++....++..-.
T Consensus 93 lT~~e~l~~~-----~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P------------ 155 (293)
T COG1131 93 LTVRENLEFF-----ARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDP------------ 155 (293)
T ss_pred ccHHHHHHHH-----HHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCC------------
Confidence 111222111 0111122 3456888899999996543 456899999999998876554322
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
.-+..+|+....++.+..+|.+.|++...
T Consensus 156 ---------~lliLDEPt~GLDp~~~~~~~~~l~~l~~ 184 (293)
T COG1131 156 ---------ELLILDEPTSGLDPESRREIWELLRELAK 184 (293)
T ss_pred ---------CEEEECCCCcCCCHHHHHHHHHHHHHHHh
Confidence 12456778888889999999998888753
No 94
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=6.3e-10 Score=104.39 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=92.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|.||||||||||+|+|++...+ +.+.+++.++..... ..+.+..+|+. ...-+.
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~vfQ~----------~~lfp~ 92 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICMVFQS----------YALFPH 92 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCC----------cccCCC
Confidence 5678899999999999999999999999997754 567777766643110 01111112211 111110
Q ss_pred -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
...+.+. +...... ....+..+|+..+++.+++..+. +.+..+|||++|+++...++..-.+
T Consensus 93 ~tv~eNi~-~~l~~~~--~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~------------- 156 (351)
T PRK11432 93 MSLGENVG-YGLKMLG--VPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPK------------- 156 (351)
T ss_pred CCHHHHHH-HHHhHcC--CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC-------------
Confidence 1111111 0000000 01123456777888888886655 5568899999999987665543221
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.+...|++.
T Consensus 157 --------lLLLDEP~s~LD~~~r~~l~~~l~~l 182 (351)
T PRK11432 157 --------VLLFDEPLSNLDANLRRSMREKIREL 182 (351)
T ss_pred --------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 24455666667777777777777665
No 95
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=1e-09 Score=104.46 Aligned_cols=160 Identities=10% Similarity=0.137 Sum_probs=93.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||||||||+|+|++.+. .+.+.+++.++... ....++.+... ...+.++......
T Consensus 47 isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~----~~~~l~~~~~~--~igyv~Q~~~l~~~ 120 (400)
T PRK10070 47 ASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKI----SDAELREVRRK--KIAMVFQSFALMPH 120 (400)
T ss_pred EEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcC----CHHHHHHHHhC--CEEEEECCCcCCCC
Confidence 577889999999999999999999999999775 46677777665422 11111111110 0011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.. ...... .......+++..+++.+++.. +.+....||||++|++....++..-.+
T Consensus 121 ~Tv~enl~~-~~~~~~--~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~------------- 184 (400)
T PRK10070 121 MTVLDNTAF-GMELAG--INAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPD------------- 184 (400)
T ss_pred CCHHHHHHH-HHHhcC--CCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCC-------------
Confidence 111222211 000000 011233456777888888854 456678999999999987665544221
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.|.+.|.+.
T Consensus 185 --------iLLLDEPts~LD~~~r~~l~~~L~~l 210 (400)
T PRK10070 185 --------ILLMDEAFSALDPLIRTEMQDELVKL 210 (400)
T ss_pred --------EEEEECCCccCCHHHHHHHHHHHHHH
Confidence 24455666777777888887777665
No 96
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.90 E-value=1.5e-09 Score=94.64 Aligned_cols=160 Identities=9% Similarity=0.129 Sum_probs=92.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~ 90 (299)
++|.+.+++.++|.||||||||||+++|++.+. .+.+.+++.++.... ......+.. ...+.++..... .
T Consensus 21 is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~----~~~~~~~~~---~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 21 VSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLR----GRQLPLLRR---RIGVVFQDFRLLPD 93 (214)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCC----HHHHHHHHh---heEEEecChhhccC
Confidence 467789999999999999999999999999765 355666665543210 001111100 001111111100 0
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+..... ... .......+++..+++.+++.. +......||+|+.|+++...++..-.+
T Consensus 94 ~tv~~~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~------------- 157 (214)
T TIGR02673 94 RTVYENVALPLE-VRG--KKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPP------------- 157 (214)
T ss_pred CcHHHHHHHHHH-HcC--CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC-------------
Confidence 111111110000 000 001123456667778888854 455668899999999987765543211
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+...|.+.|++.+
T Consensus 158 --------lllLDEPt~~LD~~~~~~l~~~l~~~~ 184 (214)
T TIGR02673 158 --------LLLADEPTGNLDPDLSERILDLLKRLN 184 (214)
T ss_pred --------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 244677777888888899988888763
No 97
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.90 E-value=1.1e-09 Score=94.72 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=91.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||+|||||+++|++.+.+ +.+.+++.++.... .......+. +...+..+......
T Consensus 17 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~~~~~~~--~~i~~~~q~~~~~~~ 90 (206)
T TIGR03608 17 LNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLN----SKKASKFRR--EKLGYLFQNFALIEN 90 (206)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccc----hhhHHHHHH--hCeeEEecchhhccC
Confidence 5677899999999999999999999999998764 55566655432110 000000000 00011111111100
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+... ..... .......+++..+++.+++... .+....||+|++++++...++..-.+
T Consensus 91 ~t~~e~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~------------- 154 (206)
T TIGR03608 91 ETVEENLDLG-LKYKK--LSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPP------------- 154 (206)
T ss_pred CcHHHHHHHH-HHhcC--CCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCC-------------
Confidence 1111111100 00000 0012234566677888888544 45668899999999987665543221
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++..
T Consensus 155 --------llllDEPt~~LD~~~~~~l~~~l~~~~ 181 (206)
T TIGR03608 155 --------LILADEPTGSLDPKNRDEVLDLLLELN 181 (206)
T ss_pred --------EEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence 244667777778888889988888763
No 98
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.90 E-value=7e-10 Score=96.50 Aligned_cols=157 Identities=14% Similarity=0.152 Sum_probs=91.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~ 89 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++... ....++. ...+.++... ..
T Consensus 20 vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~~~~~~~------~i~~~~q~~~~~~~ 89 (211)
T cd03225 20 ISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKL----SLKELRR------KVGLVFQNPDDQFF 89 (211)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccC----CHHHHHh------hceEEecChhhhcC
Confidence 4677889999999999999999999999997653 5566666544321 0011110 0011111100 00
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.....+.+.. ...... .......+++..+++.+++.. +.+....||+|+.|+++...++..-.+
T Consensus 90 ~~t~~~~l~~-~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~------------ 154 (211)
T cd03225 90 GPTVEEEVAF-GLENLG--LPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPD------------ 154 (211)
T ss_pred CCcHHHHHHH-HHHHcC--CCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC------------
Confidence 1111121110 000000 011223455667778888854 455668899999999887665543111
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|.+.+
T Consensus 155 ---------llllDEPt~~LD~~~~~~~~~~l~~~~ 181 (211)
T cd03225 155 ---------ILLLDEPTAGLDPAGRRELLELLKKLK 181 (211)
T ss_pred ---------EEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 245677778888888999999888764
No 99
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.90 E-value=6.5e-10 Score=104.69 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=88.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC----CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~----~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~ 89 (299)
++|.+..++.++|+||||||||||+|+||+...+ +.+.+++.++..... ..+.+..+|+ ....-
T Consensus 24 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ig~vfQ----------~~~l~ 91 (362)
T TIGR03258 24 LSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGLALLFQ----------NYALF 91 (362)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCEEEEEC----------CcccC
Confidence 5677889999999999999999999999997654 556677665532100 0011111111 11111
Q ss_pred ch-hhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PS-ALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE 165 (299)
Q Consensus 90 ~~-~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~ 165 (299)
+. ...+.+. +. +. .... ....+|+..+++.+++.. +.++...||||++|+++...++..-.+
T Consensus 92 p~~tv~enl~-~~--l~--~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~--------- 157 (362)
T TIGR03258 92 PHLKVEDNVA-FG--LR--AQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPD--------- 157 (362)
T ss_pred CCCcHHHHHH-HH--HH--HcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC---------
Confidence 11 1112111 00 00 0111 234567778888888855 456678999999999987665543222
Q ss_pred HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|...|++.
T Consensus 158 ------------llLLDEP~s~LD~~~r~~l~~~l~~l 183 (362)
T TIGR03258 158 ------------VLLLDEPLSALDANIRANMREEIAAL 183 (362)
T ss_pred ------------EEEEcCccccCCHHHHHHHHHHHHHH
Confidence 23355555566666666666666554
No 100
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=1.3e-09 Score=102.08 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=92.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||||||||+|+|++.+. .+.+.+++.++... ....++.+.. ...+.++......
T Consensus 24 vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~----~~~~~~~~~~---~ig~v~q~~~l~~~ 96 (343)
T PRK11153 24 VSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTAL----SEKELRKARR---QIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcC----CHHHHHHHhc---CEEEEeCCCccCCC
Confidence 567889999999999999999999999999875 45666776655321 1111111110 0011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.. ...... .......+++..+++.+++.. +.+....||||+.|++....++..-.+
T Consensus 97 ~tv~eni~~-~~~~~~--~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~------------- 160 (343)
T PRK11153 97 RTVFDNVAL-PLELAG--TPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK------------- 160 (343)
T ss_pred CcHHHHHHH-HHHHcC--CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC-------------
Confidence 111122111 000000 001233456677888888854 455668899999999987665543221
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+...+.+.|++.
T Consensus 161 --------iLlLDEPts~LD~~~~~~l~~~L~~l 186 (343)
T PRK11153 161 --------VLLCDEATSALDPATTRSILELLKDI 186 (343)
T ss_pred --------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 24466677777788888888887776
No 101
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=7.8e-10 Score=102.88 Aligned_cols=161 Identities=14% Similarity=0.182 Sum_probs=94.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~ 89 (299)
++|.+.+++.++|+|+||||||||+++|++.+.. +.+.+++.++... ....++.+... ..+.++.. ...
T Consensus 34 vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~----~~~~~~~~r~~---i~~v~Q~~~~~l~ 106 (327)
T PRK11308 34 VSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA----DPEAQKLLRQK---IQIVFQNPYGSLN 106 (327)
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC----CHHHHHHHhCC---EEEEEcCchhhcC
Confidence 5778899999999999999999999999997653 5667777665432 11122211110 01111111 111
Q ss_pred ch-hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PS-ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER 166 (299)
Q Consensus 90 ~~-~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~ 166 (299)
+. .....+.+. ...... ....+..+++..+++.+++. .+......||||++|+++...++..-.+
T Consensus 107 p~~~v~~~l~~~-~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~---------- 174 (327)
T PRK11308 107 PRKKVGQILEEP-LLINTS-LSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPD---------- 174 (327)
T ss_pred CccCHHHHHHHH-HHHccC-CCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCC----------
Confidence 11 111111110 000000 01123455677888888883 3456778999999999998766554222
Q ss_pred HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....+..+...+.+.|.+.+
T Consensus 175 -----------lLilDEPts~LD~~~~~~i~~lL~~l~ 201 (327)
T PRK11308 175 -----------VVVADEPVSALDVSVQAQVLNLMMDLQ 201 (327)
T ss_pred -----------EEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 244666677777777888888777663
No 102
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.89 E-value=2.4e-09 Score=93.75 Aligned_cols=160 Identities=12% Similarity=0.118 Sum_probs=91.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~ 90 (299)
++|.+.+++.++|.||||||||||+++|++...+ +.+.+++.++.... ......+.. ....+.++..... .
T Consensus 24 isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~----~~~~~~~~~--~~i~~v~q~~~~~~~ 97 (221)
T TIGR02211 24 VSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLS----SNERAKLRN--KKLGFIYQFHHLLPD 97 (221)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcC----HhHHHHHHH--hcEEEEecccccCCC
Confidence 5677899999999999999999999999997654 55666665543210 111111000 0001111111111 1
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+..... ... ....+..+++..+++.+++.. +.+....||+|+.|+++...++..-.+
T Consensus 98 ~tv~~~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~------------- 161 (221)
T TIGR02211 98 FTALENVAMPLL-IGK--KSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPS------------- 161 (221)
T ss_pred CcHHHHHHHHHH-hcC--CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC-------------
Confidence 112222211000 000 001123445667778888854 445568899999999887665543111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|.+.
T Consensus 162 --------illlDEPt~~LD~~~~~~l~~~l~~~ 187 (221)
T TIGR02211 162 --------LVLADEPTGNLDNNNAKIIFDLMLEL 187 (221)
T ss_pred --------EEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 24466777778888888888888765
No 103
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=9.6e-10 Score=102.41 Aligned_cols=164 Identities=14% Similarity=0.166 Sum_probs=93.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK 87 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~ 87 (299)
++|.+.+++.++|+|+||||||||+++|++... .+.+.+++.++... .....+.++.. ...+.++...
T Consensus 26 vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~----~~~~~~~~~~~--~i~~v~Q~~~ 99 (330)
T PRK15093 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRL----SPRERRKLVGH--NVSMIFQEPQ 99 (330)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcC----CHHHHHHHhCC--CEEEEecCcc
Confidence 567889999999999999999999999999864 35677777665432 11111111110 0011111110
Q ss_pred --CCch-hhhHHHhhcCcc--chhhc-CCCccHHHHHhhhcccCCHH----HHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy13773 88 --SSPS-ALRETIVEVPNI--TWEDI-GGLEGVKRELQELVQDVDLN----YIAKVTNGFSGADLTEICQRACKLAIRQS 157 (299)
Q Consensus 88 --~~~~-~~~~~l~~l~~~--l~~~~-~r~p~~~~R~~~l~~~v~l~----~LA~~t~glSggDl~~Lv~~A~~~a~~r~ 157 (299)
..+. ...+.+...... ..... .+.....+++..+++.+++. .+......||||++|+++...++..-.+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~- 178 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPR- 178 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCC-
Confidence 0111 111112110000 00000 00112345667788888884 2456778999999999987765554222
Q ss_pred HHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 158 IETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+...+.+.|++.+
T Consensus 179 --------------------llilDEPts~LD~~~~~~i~~lL~~l~ 205 (330)
T PRK15093 179 --------------------LLIADEPTNAMEPTTQAQIFRLLTRLN 205 (330)
T ss_pred --------------------EEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 244666777777788888888887764
No 104
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.88 E-value=7.2e-10 Score=100.83 Aligned_cols=156 Identities=11% Similarity=0.119 Sum_probs=91.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~ 89 (299)
++|.+.+|+.++|+|+||||||||+++|++.+. .+.+.+++.++... ....++ . ...+.++.. ...
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~----~~~~~~---~---~i~~v~q~~~~~~~ 95 (279)
T PRK13650 26 VSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE----NVWDIR---H---KIGMVFQNPDNQFV 95 (279)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcC----cHHHHH---h---hceEEEcChHHhcc
Confidence 567789999999999999999999999999765 45677777655321 111111 0 001111110 001
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.....+.+. +.. ...-.......+++..+++.+++... ......||+|++|++....++..-.+
T Consensus 96 ~~tv~eni~-~~~--~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~------------ 160 (279)
T PRK13650 96 GATVEDDVA-FGL--ENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPK------------ 160 (279)
T ss_pred cccHHHHHH-hhH--HhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence 111112221 100 00000111234567778888888654 55668999999999987665544222
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|++.
T Consensus 161 ---------lLlLDEPt~~LD~~~~~~l~~~l~~l 186 (279)
T PRK13650 161 ---------IIILDEATSMLDPEGRLELIKTIKGI 186 (279)
T ss_pred ---------EEEEECCcccCCHHHHHHHHHHHHHH
Confidence 23455666677777788888877765
No 105
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.88 E-value=1.4e-09 Score=97.19 Aligned_cols=159 Identities=10% Similarity=0.170 Sum_probs=89.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++... ....++. ...+.++..
T Consensus 22 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~----~~~~~~~------~i~~v~q~~ 91 (250)
T PRK14247 22 VNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM----DVIELRR------RVQMVFQIP 91 (250)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcC----CHHHHhc------cEEEEeccC
Confidence 567788999999999999999999999999864 45667776655321 0011110 001111111
Q ss_pred CC-CchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KS-SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 87 ~~-~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
.. ......+.+... ........+..+..+++..+++.+++. .+......||+|++|+++...++..-.+
T Consensus 92 ~~~~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~---- 166 (250)
T PRK14247 92 NPIPNLSIFENVALG-LKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPE---- 166 (250)
T ss_pred ccCCCCcHHHHHHHH-HHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCC----
Confidence 11 111112222110 000000001122234555666666652 3445568899999999887665543111
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++.+
T Consensus 167 -----------------lllLDEP~~~LD~~~~~~l~~~l~~~~ 193 (250)
T PRK14247 167 -----------------VLLADEPTANLDPENTAKIESLFLELK 193 (250)
T ss_pred -----------------EEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 244667777778888888888888764
No 106
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.88 E-value=1.7e-09 Score=99.55 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=94.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||+|||||+++|++.+.+ +.+.+++.++... ...++ . ...+.++......
T Consensus 12 vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~---~---~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE-----PRKVR---R---SIGIVPQYASVDED 80 (302)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-----HHHHH---h---hcEEecCCCCCCCC
Confidence 5678899999999999999999999999997754 5566776554221 11111 0 0122222211111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.... .+.. .......+|+..+++.+++... .+....||+|+.|+++...++..-.+
T Consensus 81 ~tv~e~l~~~~-~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~------------- 144 (302)
T TIGR01188 81 LTGRENLEMMG-RLYG--LPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPD------------- 144 (302)
T ss_pred CcHHHHHHHHH-HHcC--CCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 11222221100 0000 0112334567788888888654 45568899999999987665543211
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++.+
T Consensus 145 --------lllLDEPt~gLD~~~~~~l~~~l~~~~ 171 (302)
T TIGR01188 145 --------VLFLDEPTTGLDPRTRRAIWDYIRALK 171 (302)
T ss_pred --------EEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 244667777788888888888888764
No 107
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.88 E-value=9e-10 Score=104.16 Aligned_cols=153 Identities=14% Similarity=0.221 Sum_probs=91.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+..++.++|+||||||||||+++||+...+ +.+.+++.++..... ..+.+..+|+. ...-+
T Consensus 33 vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~vfQ~----------~~lfp~ 100 (375)
T PRK09452 33 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA--ENRHVNTVFQS----------YALFPH 100 (375)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEEEecC----------cccCCC
Confidence 5678899999999999999999999999997764 667777776542110 01111112211 11110
Q ss_pred hhhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
....+.+.. . +. ..+.+ +..+|+..+++.+++.. +.++...||||++|+++...++..-.+
T Consensus 101 ltv~eNi~~-~--l~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~----------- 164 (375)
T PRK09452 101 MTVFENVAF-G--LR--MQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK----------- 164 (375)
T ss_pred CCHHHHHHH-H--Hh--hcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC-----------
Confidence 111111110 0 00 01112 23556778888888855 456678999999999887655443221
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....+.-+.+.+...|++..
T Consensus 165 ----------llLLDEP~s~LD~~~r~~l~~~L~~l~ 191 (375)
T PRK09452 165 ----------VLLLDESLSALDYKLRKQMQNELKALQ 191 (375)
T ss_pred ----------EEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 244556666666677777777776653
No 108
>PRK10908 cell division protein FtsE; Provisional
Probab=98.88 E-value=2.5e-09 Score=93.80 Aligned_cols=160 Identities=13% Similarity=0.168 Sum_probs=91.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~ 90 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++... .......+ . ....+.++.... ..
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~----~~~~~~~~-~--~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRL----KNREVPFL-R--RQIGMIFQDHHLLMD 93 (222)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC----ChhHHHHH-H--hheEEEecCcccccc
Confidence 5677899999999999999999999999998754 5566666554321 01111111 0 001111111111 01
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.. ...... ....+..+++..+++.+++.. +.+....||+|++|+++...++..-.+
T Consensus 94 ~tv~~~l~~-~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~------------- 157 (222)
T PRK10908 94 RTVYDNVAI-PLIIAG--ASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA------------- 157 (222)
T ss_pred ccHHHHHHh-HHHhcC--CCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCC-------------
Confidence 111122111 000000 001122334556777778754 445568899999999987665543211
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|.+.+
T Consensus 158 --------llllDEPt~~LD~~~~~~l~~~l~~~~ 184 (222)
T PRK10908 158 --------VLLADEPTGNLDDALSEGILRLFEEFN 184 (222)
T ss_pred --------EEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 244667777778888888888888764
No 109
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.88 E-value=1.7e-08 Score=104.62 Aligned_cols=63 Identities=30% Similarity=0.491 Sum_probs=50.2
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhhc----------CCeecccchhhh--hccccccHHHHHHHHHHHHH
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQ----------ANFISVKGPELL--TMWFGESEANVRDIFDKVTM 78 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~----------~~~i~i~~~~l~--~~~~g~~~~~i~~~f~~a~~ 78 (299)
|.-.....++|+||||||||++++.||..+. ..++.++...+. .++.|+.+..++.+++.+..
T Consensus 195 L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~ 269 (821)
T CHL00095 195 LGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQE 269 (821)
T ss_pred HcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHh
Confidence 3445667899999999999999999999763 456778877775 36778888899999987754
No 110
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.87 E-value=2.7e-09 Score=90.67 Aligned_cols=124 Identities=16% Similarity=0.200 Sum_probs=77.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
+++.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++... ....++. ...+.++
T Consensus 18 ~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~----~~~~~~~------~i~~~~q------- 80 (180)
T cd03214 18 LSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASL----SPKELAR------KIAYVPQ------- 80 (180)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcC----CHHHHHH------HHhHHHH-------
Confidence 4677899999999999999999999999997654 5566666554321 1011110 0011110
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA 170 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~ 170 (299)
+++.+++.. +......||+|+.++++...++..-.+
T Consensus 81 -----------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~-------------- 117 (180)
T cd03214 81 -----------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPP-------------- 117 (180)
T ss_pred -----------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCC--------------
Confidence 222233322 234457899999999886654443211
Q ss_pred CCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.+++++
T Consensus 118 -------llllDEP~~~LD~~~~~~~~~~l~~~~ 144 (180)
T cd03214 118 -------ILLLDEPTSHLDIAHQIELLELLRRLA 144 (180)
T ss_pred -------EEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 244566667777788888888887763
No 111
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.87 E-value=3.2e-09 Score=84.54 Aligned_cols=55 Identities=44% Similarity=0.773 Sum_probs=50.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHH
Q psy13773 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTM 78 (299)
Q Consensus 24 vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~ 78 (299)
++|+||||||||++++++|..++.+++.+++.++.+.+.++..+.++.+|..+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~ 55 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKK 55 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999999988888899999999988754
No 112
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.87 E-value=3.5e-10 Score=110.91 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=49.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.|.|+|+||+|++++|+++++.+.| ++||+.|.. |.+-..|+|||||||||||+|.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~---l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF---LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH---HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 5789999999999999999999998 899998865 4566679999999999999884
No 113
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=2.9e-09 Score=94.03 Aligned_cols=159 Identities=13% Similarity=0.100 Sum_probs=91.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||+|||||+++|++.+.+ +.+.+++.++... ....+..... ...+.++......
T Consensus 24 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~~~~~~~~~~---~i~~~~q~~~~~~~ 96 (233)
T cd03258 24 VSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLL----SGKELRKARR---RIGMIFQHFNLLSS 96 (233)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccC----CHHHHHHHHh---heEEEccCcccCCC
Confidence 4677899999999999999999999999998764 5566776654321 1111111000 1112222111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+..... ... ........++..+++.+++..+ ......||+|+++++....++..-.+
T Consensus 97 ~t~~e~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~------------- 160 (233)
T cd03258 97 RTVFENVALPLE-IAG--VPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK------------- 160 (233)
T ss_pred CcHHHHHHHHHH-HcC--CCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 111222211000 000 0112234456677888888654 45568899999999887665543111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|.+.
T Consensus 161 --------lllLDEP~~~LD~~~~~~l~~~l~~~ 186 (233)
T cd03258 161 --------VLLCDEATSALDPETTQSILALLRDI 186 (233)
T ss_pred --------EEEecCCCCcCCHHHHHHHHHHHHHH
Confidence 24466777777888888888888765
No 114
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=1.9e-09 Score=95.44 Aligned_cols=160 Identities=13% Similarity=0.146 Sum_probs=91.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|+||||||||||+++|++.+.+ +.+.+++.++... .......+.. ...+.++......
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----~~~~~~~~~~---~i~~v~q~~~~~~~ 91 (235)
T cd03261 19 VDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGL----SEAELYRLRR---RMGMLFQSGALFDS 91 (235)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccc----ChhhHHHHhc---ceEEEccCcccCCC
Confidence 5677899999999999999999999999998754 5566666554321 0000111100 0011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+..... .... .......+++..+++.+++.. +.+....||||++|++....++..-.
T Consensus 92 ~tv~~~l~~~~~-~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p-------------- 155 (235)
T cd03261 92 LTVFENVAFPLR-EHTR-LSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDP-------------- 155 (235)
T ss_pred CcHHHHHHHHHh-hccC-CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC--------------
Confidence 111122211000 0000 001122445667778888854 44556789999999988765544311
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
..+..+|+....++.+.+.|.+.|++.
T Consensus 156 -------~llllDEPt~~LD~~~~~~l~~~l~~~ 182 (235)
T cd03261 156 -------ELLLYDEPTAGLDPIASGVIDDLIRSL 182 (235)
T ss_pred -------CEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 124466777778888888998888876
No 115
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.85 E-value=5.9e-09 Score=92.62 Aligned_cols=162 Identities=14% Similarity=0.200 Sum_probs=91.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++... .......+.. ...+.++......
T Consensus 21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~~~~~---~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 21 INLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKL----RGKKLRKLRR---RIGMIFQHYNLIER 93 (243)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhC----CHHHHHHHHh---heEEEcCCCccccc
Confidence 567789999999999999999999999999765 35566666554321 0011111110 0111111111111
Q ss_pred hhhhHHHhhcCccc---hhhcCC--CccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNIT---WEDIGG--LEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRR 164 (299)
Q Consensus 91 ~~~~~~l~~l~~~l---~~~~~r--~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~ 164 (299)
....+.+....... ...+.. .....+++..+++.+++.. +......||+|+.|+++...++..-.+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~-------- 165 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPD-------- 165 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC--------
Confidence 11122221100000 000000 1223456677788888854 455668899999999987665543221
Q ss_pred HHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.|.+.|++.
T Consensus 166 -------------llllDEPt~~LD~~~~~~l~~~l~~~ 191 (243)
T TIGR02315 166 -------------LILADEPIASLDPKTSKQVMDYLKRI 191 (243)
T ss_pred -------------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 24456666777777788888877765
No 116
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=2.7e-09 Score=92.76 Aligned_cols=153 Identities=13% Similarity=0.124 Sum_probs=91.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||||||||+++|++...+ +.+.+++.++.. . .. ....+.++......
T Consensus 19 v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--------~----~~--~~i~~~~q~~~~~~~ 84 (210)
T cd03269 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI--------A----AR--NRIGYLPEERGLYPK 84 (210)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH--------H----HH--ccEEEeccCCcCCcC
Confidence 5778899999999999999999999999997654 455666554321 0 00 00011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+... ..... .......+++..+++.+++.. +......||+|+.++++...++..-.+
T Consensus 85 ~tv~e~l~~~-~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~------------- 148 (210)
T cd03269 85 MKVIDQLVYL-AQLKG--LKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPE------------- 148 (210)
T ss_pred CcHHHHHHHH-HHHcC--CChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 1112222110 00000 011233456667778888854 445668899999999887655543221
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++-+.+.|.+.|++.+
T Consensus 149 --------~lllDEP~~~LD~~~~~~~~~~l~~~~ 175 (210)
T cd03269 149 --------LLILDEPFSGLDPVNVELLKDVIRELA 175 (210)
T ss_pred --------EEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 244667777778888888988888764
No 117
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.85 E-value=4.4e-09 Score=92.57 Aligned_cols=159 Identities=13% Similarity=0.222 Sum_probs=91.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh-----c--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-----Q--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l-----~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||||||||+++|++.. . .+.+.+++.++.... . ....+. ....+.++..
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~----~-~~~~~~---~~i~~~~q~~ 90 (227)
T cd03260 19 ISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD----V-DVLELR---RRVGMVFQKP 90 (227)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcc----h-HHHHHH---hhEEEEecCc
Confidence 56778999999999999999999999999987 4 355666665543210 0 000100 0001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCc-c-HHHHHhhhcccCCHHHH-HHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLE-G-VKRELQELVQDVDLNYI-AKV--TNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p-~-~~~R~~~l~~~v~l~~L-A~~--t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
........+.+.. .... ..... + ..+++..+++.+++... ... ...||+|++|+++...++..-.
T Consensus 91 ~~~~~tv~e~l~~-~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p------ 160 (227)
T cd03260 91 NPFPGSIYDNVAY-GLRL---HGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEP------ 160 (227)
T ss_pred hhccccHHHHHHh-HHHh---cCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCC------
Confidence 0000111111110 0000 00011 1 34566777888888554 444 3889999999988765444311
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
..+..+|+....++.+.+.+.+.|++...
T Consensus 161 ---------------~llllDEPt~~LD~~~~~~l~~~l~~~~~ 189 (227)
T cd03260 161 ---------------EVLLLDEPTSALDPISTAKIEELIAELKK 189 (227)
T ss_pred ---------------CEEEEeCCCccCCHHHHHHHHHHHHHHhh
Confidence 12446677777888888889888887643
No 118
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.85 E-value=2.5e-09 Score=101.98 Aligned_cols=159 Identities=13% Similarity=0.132 Sum_probs=92.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~ 90 (299)
++|.+.+++.++|+||||+|||||+|+|++.+. .+.+.+++.++... ....++ +...+..+.... ..
T Consensus 22 vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~----~~~~~~------~~ig~v~q~~~l~~~ 91 (402)
T PRK09536 22 VDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEAL----SARAAS------RRVASVPQDTSLSFE 91 (402)
T ss_pred eEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcC----CHHHHh------cceEEEccCCCCCCC
Confidence 567789999999999999999999999999765 46677777655432 111111 111122221111 11
Q ss_pred hhhhHHHhhcCccch-hhcCC-CccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITW-EDIGG-LEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~-~~~~r-~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
....+.+. +..... ..+.. .....+++..+++.+++..+. +....||+|++|++....++..-.+
T Consensus 92 ~tv~e~v~-~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~----------- 159 (402)
T PRK09536 92 FDVRQVVE-MGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATP----------- 159 (402)
T ss_pred CCHHHHHH-hccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC-----------
Confidence 11112211 100000 00111 122345677888888886655 4457899999999987765543111
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+...|.+.|++..
T Consensus 160 ----------iLLLDEPtsgLD~~~~~~l~~lL~~l~ 186 (402)
T PRK09536 160 ----------VLLLDEPTASLDINHQVRTLELVRRLV 186 (402)
T ss_pred ----------EEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 244556666666777777777776653
No 119
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=2.5e-09 Score=94.55 Aligned_cols=160 Identities=12% Similarity=0.153 Sum_probs=92.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||||||||+++|++.+. .+.+.+++.++... .......+.. +...+.++......
T Consensus 28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~----~~~~~~~~~~--~~i~~v~q~~~~~~~ 101 (233)
T PRK11629 28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKL----SSAAKAELRN--QKLGFIYQFHHLLPD 101 (233)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC----CHHHHHHHHh--ccEEEEecCcccCCC
Confidence 567789999999999999999999999999765 35566666554321 1111111110 00011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.. ...... .......+++..+++.+++..+ ......||+|+.|+++...++..-.
T Consensus 102 ~tv~e~l~~-~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p-------------- 164 (233)
T PRK11629 102 FTALENVAM-PLLIGK--KKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNP-------------- 164 (233)
T ss_pred CCHHHHHHH-HHHhcC--CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC--------------
Confidence 112222211 000000 0112334566778888888554 4556789999999998765544311
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
..+..+|+....++.+.+.+.+.|++.
T Consensus 165 -------~lllLDEPt~~LD~~~~~~l~~~l~~~ 191 (233)
T PRK11629 165 -------RLVLADEPTGNLDARNADSIFQLLGEL 191 (233)
T ss_pred -------CEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 124466777777888888888888776
No 120
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=1.5e-09 Score=102.85 Aligned_cols=125 Identities=15% Similarity=0.200 Sum_probs=74.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|.||||||||||+|+||+...+ +.+.+++.++.... ...+.+..+|+. ...-+.
T Consensus 38 vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~--~~~r~ig~vfQ~----------~~lfp~ 105 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP--PYQRPINMMFQS----------YALFPH 105 (377)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC--HHHCCEEEEeCC----------CccCCC
Confidence 5778899999999999999999999999997654 56777776653210 001111111211 111111
Q ss_pred -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHH
Q psy13773 92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLA 153 (299)
Q Consensus 92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a 153 (299)
...+.+.- . +...-....+..+|+..+++.+++..+ .++...||||+.|+++...++..
T Consensus 106 ltv~eNi~~-~--l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~ 166 (377)
T PRK11607 106 MTVEQNIAF-G--LKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK 166 (377)
T ss_pred CCHHHHHHH-H--HHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 11111110 0 000000112345677788888888554 46668999999999887765554
No 121
>KOG0742|consensus
Probab=98.85 E-value=2.5e-08 Score=92.97 Aligned_cols=58 Identities=29% Similarity=0.661 Sum_probs=45.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHH
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTM 78 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~ 78 (299)
+=+.|++|||||+|||+++|-||...|..+-...+-|+.-. -.+....|.++|+.+..
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakk 440 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKK 440 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhh
Confidence 44679999999999999999999999988877777766432 11245678899988764
No 122
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.84 E-value=3.7e-09 Score=92.55 Aligned_cols=157 Identities=13% Similarity=0.087 Sum_probs=91.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~ 90 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++... . ..+.. ...+.++..... .
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~----~~~~~---~i~~v~q~~~~~~~ 89 (220)
T cd03263 21 LSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD----R----KAARQ---SLGYCPQFDALFDE 89 (220)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc----h----HHHhh---hEEEecCcCCcccc
Confidence 5677899999999999999999999999997654 5566666554221 0 00000 001111111111 1
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.. ...... .......+++..+++.+++... ......||+|+.|++....++..-.+
T Consensus 90 ~tv~~~l~~-~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~------------- 153 (220)
T cd03263 90 LTVREHLRF-YARLKG--LPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPS------------- 153 (220)
T ss_pred CCHHHHHHH-HHHHcC--CCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 111122111 000000 0011234566677888888544 45568899999999887655543111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
-+..+|+....++-+.+.+.+.|++...
T Consensus 154 --------llllDEP~~~LD~~~~~~l~~~l~~~~~ 181 (220)
T cd03263 154 --------VLLLDEPTSGLDPASRRAIWDLILEVRK 181 (220)
T ss_pred --------EEEECCCCCCCCHHHHHHHHHHHHHHhc
Confidence 2446677777788888899998887654
No 123
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=1.1e-09 Score=99.69 Aligned_cols=156 Identities=12% Similarity=0.145 Sum_probs=89.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-----CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK- 87 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-----~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~- 87 (299)
++|.+.+++.++|.||||||||||+++|++.+.+ +.+.+++.++... ....++. ...+.++...
T Consensus 26 v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~----~~~~~~~------~ig~v~q~~~~ 95 (282)
T PRK13640 26 ISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK----TVWDIRE------KVGIVFQNPDN 95 (282)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC----CHHHHHh------heEEEEECHHH
Confidence 4677899999999999999999999999998754 5677777655321 1011110 0011111100
Q ss_pred -CCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 88 -SSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE 165 (299)
Q Consensus 88 -~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~ 165 (299)
.......+.+. +. .........+..+++..+++.+++.. +......||+|++++++...++..-.+
T Consensus 96 ~~~~~tv~enl~-~~--~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~--------- 163 (282)
T PRK13640 96 QFVGATVGDDVA-FG--LENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK--------- 163 (282)
T ss_pred hhccCCHHHHHH-hh--HHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC---------
Confidence 00111112221 00 00000011123456777888888855 456668999999999887665543221
Q ss_pred HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.+.+.|++.
T Consensus 164 ------------llllDEPt~gLD~~~~~~l~~~l~~l 189 (282)
T PRK13640 164 ------------IIILDESTSMLDPAGKEQILKLIRKL 189 (282)
T ss_pred ------------EEEEECCcccCCHHHHHHHHHHHHHH
Confidence 23355666666777777777777665
No 124
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.84 E-value=2.9e-09 Score=93.80 Aligned_cols=160 Identities=13% Similarity=0.164 Sum_probs=91.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++... .......... ....+.++......
T Consensus 29 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~----~~~~~~~~~~--~~i~~~~q~~~l~~~ 102 (228)
T PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQM----DEEARAKLRA--KHVGFVFQSFMLIPT 102 (228)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccC----CHHHHHHHHh--heEEEEEcccccCCC
Confidence 4677899999999999999999999999998654 5556666544321 1111000000 00011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.. ...... ...+...+++..+++.+++.. +......||+|++|++....++..-.+
T Consensus 103 ~tv~~~l~~-~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~------------- 166 (228)
T PRK10584 103 LNALENVEL-PALLRG--ESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPD------------- 166 (228)
T ss_pred cCHHHHHHH-HHHhcC--CCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 111111110 000000 011233556777888888854 455668899999999987655443111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|.+.
T Consensus 167 --------llllDEPt~~LD~~~~~~l~~~l~~~ 192 (228)
T PRK10584 167 --------VLFADEPTGNLDRQTGDKIADLLFSL 192 (228)
T ss_pred --------EEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 24466777777788888888888765
No 125
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.84 E-value=3.4e-09 Score=98.66 Aligned_cols=133 Identities=18% Similarity=0.240 Sum_probs=87.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA 92 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~ 92 (299)
+++.+.+++.+.|+|.+||||||+.++|.+.+.+ +.|.+++.++... +.+.++.+...-.. .|+....+..+..
T Consensus 306 isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~----~~~~mrplR~~mQv-VFQDPygSLsPRm 380 (534)
T COG4172 306 ISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGL----SRKEMRPLRRRMQV-VFQDPYGSLSPRM 380 (534)
T ss_pred ceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccccc----ChhhhhhhhhhceE-EEeCCCCCCCccc
Confidence 5677899999999999999999999999998764 6788888888654 44444443332111 2333333333332
Q ss_pred hh-HHHhhcCccchhhcCCCccHHHHHhhhcccCCH--HHHHHhcCCCCHHHHHHHHHHHHHH
Q psy13773 93 LR-ETIVEVPNITWEDIGGLEGVKRELQELVQDVDL--NYIAKVTNGFSGADLTEICQRACKL 152 (299)
Q Consensus 93 ~~-~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l--~~LA~~t~glSggDl~~Lv~~A~~~ 152 (299)
.. +.+.+- -.+........++.+|+...+..+++ ....++++.||||+.|+++.+.++.
T Consensus 381 tV~qII~EG-L~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAli 442 (534)
T COG4172 381 TVGQIIEEG-LRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALI 442 (534)
T ss_pred CHHHHhhhh-hhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHh
Confidence 22 222221 11111112234567788888888888 5678999999999999998766543
No 126
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=1.1e-09 Score=99.33 Aligned_cols=157 Identities=13% Similarity=0.119 Sum_probs=92.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~ 89 (299)
++|.+.+++.++|.|+||||||||+++|++.+. .+.+.+++.++... ....++. ...+.++.. ...
T Consensus 24 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~~------~i~~v~q~~~~~~~ 93 (274)
T PRK13647 24 LSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAE----NEKWVRS------KVGLVFQDPDDQVF 93 (274)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCC----CHHHHHh------hEEEEecChhhhhc
Confidence 557789999999999999999999999999765 45677776654321 1111110 001111110 000
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.....+.+. +... ... .......+++..+++.+++.. +.+....||+|++|++....++..-.+
T Consensus 94 ~~tv~e~l~-~~~~-~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~------------ 158 (274)
T PRK13647 94 SSTVWDDVA-FGPV-NMG-LDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD------------ 158 (274)
T ss_pred cCcHHHHHH-hhHH-HcC-CCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC------------
Confidence 011112221 0000 000 001123456667788888854 455668999999999887765544221
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|++.+
T Consensus 159 ---------llllDEPt~~LD~~~~~~l~~~l~~~~ 185 (274)
T PRK13647 159 ---------VIVLDEPMAYLDPRGQETLMEILDRLH 185 (274)
T ss_pred ---------EEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 244667777778888888888887764
No 127
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.84 E-value=1.6e-09 Score=102.48 Aligned_cols=154 Identities=14% Similarity=0.181 Sum_probs=89.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||||||||+++|++...+ +.+.+++.++..... ..+.+ .+.++....-.
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i----------~~v~Q~~~l~~~ 89 (369)
T PRK11000 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV----------GMVFQSYALYPH 89 (369)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE----------EEEeCCcccCCC
Confidence 5677889999999999999999999999997654 566677665532100 00001 11111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.. ...... ....+..+|+..+++.+++..+ .+....||||++|+++...++..-.+
T Consensus 90 ~tv~eni~~-~~~~~~--~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~------------- 153 (369)
T PRK11000 90 LSVAENMSF-GLKLAG--AKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS------------- 153 (369)
T ss_pred CCHHHHHHh-HHhhcC--CCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 111121110 000000 0112334577788888888654 45668999999999987665543221
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.+.+.|+++
T Consensus 154 --------lLLLDEPts~LD~~~~~~l~~~L~~l 179 (369)
T PRK11000 154 --------VFLLDEPLSNLDAALRVQMRIEISRL 179 (369)
T ss_pred --------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 24455666666667777777666655
No 128
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.84 E-value=5.2e-09 Score=91.17 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=91.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC---
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS--- 88 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~--- 88 (299)
++|.+.+++.++|.||||||||||+++|++...+ +.+.+++.++. ..+ ....+.++....
T Consensus 18 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~---------~~~------~~i~~v~q~~~~~~~ 82 (213)
T cd03235 18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE---------KER------KRIGYVPQRRSIDRD 82 (213)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH---------HHH------hheEEeccccccccC
Confidence 5678899999999999999999999999997654 45556654432 000 000111111110
Q ss_pred CchhhhHHHhhcCccchhhcCC-CccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 89 SPSALRETIVEVPNITWEDIGG-LEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER 166 (299)
Q Consensus 89 ~~~~~~~~l~~l~~~l~~~~~r-~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~ 166 (299)
......+.+............. .....++...+++.+++... .+....||+|+.|+++...++..-.+
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~---------- 152 (213)
T cd03235 83 FPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD---------- 152 (213)
T ss_pred CCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCC----------
Confidence 0011222221100000000000 11234566677888888554 45668899999999987665543111
Q ss_pred HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++..
T Consensus 153 -----------llllDEPt~~LD~~~~~~l~~~l~~~~ 179 (213)
T cd03235 153 -----------LLLLDEPFAGVDPKTQEDIYELLRELR 179 (213)
T ss_pred -----------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 244667777888888999999888764
No 129
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=3.3e-09 Score=92.91 Aligned_cols=155 Identities=15% Similarity=0.125 Sum_probs=90.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||+|||||+++|++.+.+ +.+.+++.++... ....+ ....+.++......
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-----~~~~~------~~i~~~~q~~~~~~~ 87 (220)
T cd03265 19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-----PREVR------RRIGIVFQDLSVDDE 87 (220)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-----hHHHh------hcEEEecCCcccccc
Confidence 5677889999999999999999999999997654 4566665543211 01110 00011221111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.. ...... ....+..+++..+++.+++.. +......||+|++|+++...++..-.+
T Consensus 88 ~tv~~~l~~-~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~------------- 151 (220)
T cd03265 88 LTGWENLYI-HARLYG--VPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE------------- 151 (220)
T ss_pred CcHHHHHHH-HHHHcC--CCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 111111110 000000 001223456677788888854 455668899999999887655443111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|.+.
T Consensus 152 --------llllDEPt~~LD~~~~~~l~~~l~~~ 177 (220)
T cd03265 152 --------VLFLDEPTIGLDPQTRAHVWEYIEKL 177 (220)
T ss_pred --------EEEEcCCccCCCHHHHHHHHHHHHHH
Confidence 24466777777788888888888765
No 130
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.83 E-value=2.6e-09 Score=93.02 Aligned_cols=154 Identities=12% Similarity=0.191 Sum_probs=90.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~ 90 (299)
++|.+.+++.++|.||||+|||||+++|++.+. .+.+.+++.++..... ....+..+++ ..... .
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~~~~q----------~~~~~~~ 86 (213)
T cd03301 19 LNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIAMVFQ----------NYALYPH 86 (213)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--ccceEEEEec----------ChhhccC
Confidence 467789999999999999999999999999765 3556676665532100 0001111111 10000 0
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.. ...... .......+++..+++.+++.. +......||+|+.|+++...++..-.+
T Consensus 87 ~tv~~~l~~-~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~------------- 150 (213)
T cd03301 87 MTVYDNIAF-GLKLRK--VPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK------------- 150 (213)
T ss_pred CCHHHHHHH-HHHhcC--CCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 111111110 000000 011223445667778888854 455668899999999887655443111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++-+.+.+.+.|++.
T Consensus 151 --------llllDEPt~~LD~~~~~~l~~~l~~~ 176 (213)
T cd03301 151 --------VFLMDEPLSNLDAKLRVQMRAELKRL 176 (213)
T ss_pred --------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 24466777777888888888888776
No 131
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.83 E-value=3.9e-09 Score=92.23 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=93.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
.+|.+.+++.++|.|+||||||||+++|++... .+.+.+++.++.. ... . +. ....+.++......
T Consensus 24 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~---~-~~--~~i~~~~q~~~~~~~ 92 (218)
T cd03266 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-----EPA---E-AR--RRLGFVSDSTGLYDR 92 (218)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-----CHH---H-HH--hhEEEecCCcccCcC
Confidence 356778999999999999999999999999765 4556666654421 000 1 10 00112222111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+... ..... ....+..+++..+++.+++.. +.+....+|+|+.++++...++..-.+
T Consensus 93 ~tv~e~l~~~-~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~------------- 156 (218)
T cd03266 93 LTARENLEYF-AGLYG--LKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP------------- 156 (218)
T ss_pred CCHHHHHHHH-HHHcC--CCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCC-------------
Confidence 1122222110 00000 011233556677888888854 556778899999999887665543111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++.+
T Consensus 157 --------illlDEPt~~LD~~~~~~l~~~l~~~~ 183 (218)
T cd03266 157 --------VLLLDEPTTGLDVMATRALREFIRQLR 183 (218)
T ss_pred --------EEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 244667777788888888988888764
No 132
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=2.5e-09 Score=93.19 Aligned_cols=154 Identities=17% Similarity=0.208 Sum_probs=89.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~ 90 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++.... ...+.+..+++ .... ..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q----------~~~~~~~ 86 (213)
T cd03259 19 LSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGMVFQ----------DYALFPH 86 (213)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEEEcC----------chhhccC
Confidence 5678899999999999999999999999997653 55666665543210 00000111111 0000 00
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.. . ....-.......+++..+++.+++.. +.+....||+|++|+++...++..-.+
T Consensus 87 ~tv~~~l~~-~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~------------- 150 (213)
T cd03259 87 LTVAENIAF-G--LKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS------------- 150 (213)
T ss_pred CcHHHHHHh-H--HHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 111111110 0 00000001223445667778888854 455568899999999987665543111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+...|.+.|.+.
T Consensus 151 --------~lllDEPt~~LD~~~~~~l~~~l~~~ 176 (213)
T cd03259 151 --------LLLLDEPLSALDAKLREELREELKEL 176 (213)
T ss_pred --------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 24466777777888888888888775
No 133
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=1.4e-09 Score=99.02 Aligned_cols=157 Identities=15% Similarity=0.139 Sum_probs=92.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~ 89 (299)
++|.+.+|+.++|.||||+|||||+++|++.+. .+.+.+++.++... ....++. ...+.++.. ...
T Consensus 26 vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~----~~~~~~~------~i~~~~q~~~~~~~ 95 (279)
T PRK13635 26 VSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEE----TVWDVRR------QVGMVFQNPDNQFV 95 (279)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC----cHHHHhh------heEEEEeCHHHhcc
Confidence 567789999999999999999999999999775 45567777665321 1111110 001111100 000
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.....+.+.. . .........+..+++..+++.+++.. +......||+|+++++....++..-.+
T Consensus 96 ~~tv~enl~~-~--~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~------------ 160 (279)
T PRK13635 96 GATVQDDVAF-G--LENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPD------------ 160 (279)
T ss_pred cccHHHHHhh-h--HhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence 0111122211 0 00000011223456677778788854 455668899999999887665543221
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|.+..
T Consensus 161 ---------lllLDEPt~gLD~~~~~~l~~~l~~l~ 187 (279)
T PRK13635 161 ---------IIILDEATSMLDPRGRREVLETVRQLK 187 (279)
T ss_pred ---------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 244667777778888888888887664
No 134
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.82 E-value=3.7e-09 Score=92.18 Aligned_cols=156 Identities=12% Similarity=0.151 Sum_probs=93.4
Q ss_pred hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773 13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP 90 (299)
Q Consensus 13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~ 90 (299)
-+++.+.+++.++|.||||+|||||+++|++... .+.+.+++.++... . ..+ +...+.++......
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~--~~~------~~i~~v~q~~~~~~ 83 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL----A--PYQ------RPVSMLFQENNLFA 83 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC----C--hhc------cceEEEeccCccCC
Confidence 3578889999999999999999999999999875 45566776554321 0 000 00011121111111
Q ss_pred -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
....+.+.. . ............+++..+++.+++..+ .+....||+|+++++....++..-.+
T Consensus 84 ~~t~~en~~~-~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~------------ 148 (213)
T TIGR01277 84 HLTVRQNIGL-G--LHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNP------------ 148 (213)
T ss_pred CCcHHHHHHh-H--hhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCC------------
Confidence 111122211 0 000000011234566677888888554 45568999999999987665543211
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++..
T Consensus 149 ---------llllDEPt~~LD~~~~~~~~~~l~~~~ 175 (213)
T TIGR01277 149 ---------ILLLDEPFSALDPLLREEMLALVKQLC 175 (213)
T ss_pred ---------EEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 244667777788888888988888763
No 135
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.82 E-value=1.2e-08 Score=87.73 Aligned_cols=125 Identities=18% Similarity=0.226 Sum_probs=74.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
+++.+.+++.+.|.||||+|||||+|+|++++.+ +.+.+++.++.+. ........+ +..++.....-.
T Consensus 20 vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~-~~~~lA~~r---------aVlpQ~s~laFp 89 (259)
T COG4559 20 VSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSW-PPEELARHR---------AVLPQNSSLAFP 89 (259)
T ss_pred cceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhC-CHHHHHHHh---------hhcccCcccccc
Confidence 5677899999999999999999999999999875 4555666655442 211111222 222322221111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHH-HhhhcccCCHHHHHHhc-CCCCHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRE-LQELVQDVDLNYIAKVT-NGFSGADLTEICQRA 149 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R-~~~l~~~v~l~~LA~~t-~glSggDl~~Lv~~A 149 (299)
.....+.++-..-. ...+.|.+.+| ....+...|+..+|.+. ..+|||+.|++-...
T Consensus 90 Ftv~eVV~mGr~p~-~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlAR 148 (259)
T COG4559 90 FTVQEVVQMGRIPH-RSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLAR 148 (259)
T ss_pred eEHHHHHHhccccc-ccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHH
Confidence 11122222211110 01223444444 44778889999998766 679999999976543
No 136
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.82 E-value=2.6e-09 Score=101.12 Aligned_cols=161 Identities=12% Similarity=0.109 Sum_probs=91.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccch----hhhhccccccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGP----ELLTMWFGESEANVRDIFDKVTMENFRYAMGK 87 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~----~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~ 87 (299)
++|.+.+++.++|+|+||||||||+|+|++.+.+ +.+.+++. ++... ....++.+... ...+.++...
T Consensus 43 vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~----~~~~l~~~r~~--~i~~vfQ~~~ 116 (382)
T TIGR03415 43 ASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANC----DAATLRRLRTH--RVSMVFQKFA 116 (382)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccC----CHHHHHHHhcC--CEEEEECCCc
Confidence 5778899999999999999999999999997754 56667653 22211 11222211110 0011111111
Q ss_pred CCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 88 SSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE 165 (299)
Q Consensus 88 ~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~ 165 (299)
..+ ....+.+.. . +...-.......+++..+++.+++... ......||||++|++....++..-.+
T Consensus 117 l~p~~Tv~eNi~~-~--~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~--------- 184 (382)
T TIGR03415 117 LMPWLTVEENVAF-G--LEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDAD--------- 184 (382)
T ss_pred CCCCCcHHHHHHH-H--HHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC---------
Confidence 111 111122110 0 000000112334667788888888554 45557899999999987665543211
Q ss_pred HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+..+|.+.|.+.+
T Consensus 185 ------------ILLlDEPts~LD~~~r~~l~~~L~~l~ 211 (382)
T TIGR03415 185 ------------ILLMDEPFSALDPLIRTQLQDELLELQ 211 (382)
T ss_pred ------------EEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 233556666667777777777776653
No 137
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=4e-09 Score=96.27 Aligned_cols=160 Identities=12% Similarity=0.137 Sum_probs=90.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~ 89 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++...........++ . ...+.++.. ...
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~---~---~ig~v~q~~~~~l~ 99 (286)
T PRK13646 26 VNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVR---K---RIGMVFQFPESQLF 99 (286)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH---h---heEEEecChHhccc
Confidence 567789999999999999999999999999765 456777776653211111111111 0 001111110 000
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
.....+.+...+. ..-.......+++..++..+++. .+ ......||+|++|+++...++..-.+
T Consensus 100 ~~tv~e~i~~~~~---~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~----------- 165 (286)
T PRK13646 100 EDTVEREIIFGPK---NFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPD----------- 165 (286)
T ss_pred hhhHHHHHHhhHH---HcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCC-----------
Confidence 0111122210000 00001122345667788888884 44 45678999999999887665543211
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+++....++.+...+.+.|++.
T Consensus 166 ----------illlDEPt~~LD~~~~~~l~~~l~~l 191 (286)
T PRK13646 166 ----------IIVLDEPTAGLDPQSKRQVMRLLKSL 191 (286)
T ss_pred ----------EEEEECCcccCCHHHHHHHHHHHHHH
Confidence 23455666666777777777777664
No 138
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.82 E-value=4.8e-09 Score=92.37 Aligned_cols=154 Identities=15% Similarity=0.210 Sum_probs=89.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++.... ....+ ....+.++.......
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~~~------~~i~~~~q~~~l~~~ 95 (225)
T PRK10247 26 ISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLK----PEIYR------QQVSYCAQTPTLFGD 95 (225)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCC----HHHHH------hccEEEecccccccc
Confidence 567789999999999999999999999999764 455666665443210 00010 000111111111111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
...+.+.. .. .........++...+++.+++ .. +......||+|+.++++...++..-.
T Consensus 96 tv~enl~~-~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p-------------- 156 (225)
T PRK10247 96 TVYDNLIF-PW----QIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMP-------------- 156 (225)
T ss_pred cHHHHHHh-HH----hhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCC--------------
Confidence 12222211 00 001112234556677888888 33 45666889999999998765544311
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
..+..+|+....++.+.+.|.+.|.+.
T Consensus 157 -------~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (225)
T PRK10247 157 -------KVLLLDEITSALDESNKHNVNEIIHRY 183 (225)
T ss_pred -------CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 124466677777778888888888775
No 139
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.82 E-value=4.1e-09 Score=87.71 Aligned_cols=133 Identities=15% Similarity=0.182 Sum_probs=83.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh--cCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC--QANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l--~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
+++.+.+++.+.|+||+|+|||||+-.+|+.- ..+.+++.+..+... .+..... |+.. .-.|..+.-...+.
T Consensus 29 V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~l----dEd~rA~-~R~~-~vGfVFQSF~Lip~ 102 (228)
T COG4181 29 VELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKL----DEDARAA-LRAR-HVGFVFQSFHLIPN 102 (228)
T ss_pred ceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhc----CHHHHHH-hhcc-ceeEEEEeeecccc
Confidence 66788999999999999999999999999954 456777888777654 2222221 2111 00111111111111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NYIAKVTNGFSGADLTEICQRACKLAI 154 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~LA~~t~glSggDl~~Lv~~A~~~a~ 154 (299)
...-....+|-.+.. ....+..++...++..+++ +.+..++..+|||+.|+++...++.+-
T Consensus 103 ltAlENV~lPleL~g--e~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~ 164 (228)
T COG4181 103 LTALENVALPLELRG--ESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR 164 (228)
T ss_pred chhhhhccchhhhcC--CccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence 111111112222221 1245667778888999999 778899999999999999877666553
No 140
>KOG0740|consensus
Probab=98.81 E-value=1.4e-09 Score=102.86 Aligned_cols=67 Identities=18% Similarity=0.066 Sum_probs=57.3
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 194 AHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 194 ~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
..+.+-+-...+.|.|+||.|++++|+.+.+.+.| |+..|++|..--.=.-|+||.||||||||+|-
T Consensus 137 ~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~--p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~ 203 (428)
T KOG0740|consen 137 EGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVIL--PLLRPDLFLGLREPVRGLLLFGPPGTGKTMLA 203 (428)
T ss_pred HHHHHHHhccCCcccccCCcchhhHHHHhhhhhhh--cccchHhhhccccccchhheecCCCCchHHHH
Confidence 34444455555779999999999999999999999 99999999876666669999999999999874
No 141
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.81 E-value=4.1e-09 Score=91.33 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=89.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.|+||+|||||+++|++.+.+ +.+.+++.++... ...+. +...+..+......
T Consensus 20 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~---------~~~~~--~~~~~~~~~~~~~~~ 88 (204)
T PRK13538 20 LSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ---------RDEYH--QDLLYLGHQPGIKTE 88 (204)
T ss_pred ceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc---------hHHhh--hheEEeCCccccCcC
Confidence 5678899999999999999999999999997764 4556665544211 00010 00011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+... . . ... ....+++..+++.+++... ......||+|++++++...++..-.+
T Consensus 89 ~tv~e~l~~~-~---~-~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~------------- 149 (204)
T PRK13538 89 LTALENLRFY-Q---R-LHG-PGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAP------------- 149 (204)
T ss_pred CcHHHHHHHH-H---H-hcC-ccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCC-------------
Confidence 1111221110 0 0 000 1234566677888888544 45557899999999887554433111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.+.+.|++.
T Consensus 150 --------llllDEPt~~LD~~~~~~l~~~l~~~ 175 (204)
T PRK13538 150 --------LWILDEPFTAIDKQGVARLEALLAQH 175 (204)
T ss_pred --------EEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 24466777777888888888888765
No 142
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.81 E-value=4.4e-09 Score=91.15 Aligned_cols=149 Identities=17% Similarity=0.208 Sum_probs=88.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~ 89 (299)
++|.+.+++.++|.||||||||||+++|++...+ +.+.+++.++.. ...+ +...+.++... ..
T Consensus 19 v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-------~~~~------~~i~~~~q~~~~~~~ 85 (205)
T cd03226 19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA-------KERR------KSIGYVMQDVDYQLF 85 (205)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh-------HHhh------cceEEEecChhhhhh
Confidence 4677899999999999999999999999997654 455566554321 0000 00011111100 00
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.....+.+.. .. . .......++..+++.+++... .+....||+|+.|++....++..-.+
T Consensus 86 ~~tv~e~l~~-~~---~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~------------ 146 (205)
T cd03226 86 TDSVREELLL-GL---K---ELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKD------------ 146 (205)
T ss_pred hccHHHHHhh-hh---h---hcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCC------------
Confidence 0111111110 00 0 011223566677778888543 45567899999999987655443111
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.|.+.|++.
T Consensus 147 ---------llllDEPt~~LD~~~~~~l~~~l~~~ 172 (205)
T cd03226 147 ---------LLIFDEPTSGLDYKNMERVGELIREL 172 (205)
T ss_pred ---------EEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 24466777788888899999988876
No 143
>KOG0734|consensus
Probab=98.81 E-value=8.5e-10 Score=105.42 Aligned_cols=54 Identities=22% Similarity=0.275 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCC-cccccCCCCCCCeeee
Q psy13773 206 SVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGP-NSAPANESGTGGILLM 262 (299)
Q Consensus 206 sVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s-~~l~~g~~gtg~~ll~ 262 (299)
+|+++||.|.++.|+++.|.|++ ||.|+-|...-.|=+ ||||.||||||||||-
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVef---LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLA 354 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEF---LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLA 354 (752)
T ss_pred ccccccccChHHHHHHHHHHHHH---hcCcHHhhhccCcCCCceEEeCCCCCchhHHH
Confidence 69999999999999999999999 999999998776654 9999999999999995
No 144
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.81 E-value=6.7e-09 Score=90.37 Aligned_cols=160 Identities=15% Similarity=0.168 Sum_probs=91.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++... ...... +. ....+.++......
T Consensus 19 ~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-----~~~~~~-~~--~~i~~~~q~~~~~~~ 90 (213)
T cd03262 19 IDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDD-----KKNINE-LR--QKVGMVFQQFNLFPH 90 (213)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCcc-----chhHHH-HH--hcceEEecccccCCC
Confidence 567789999999999999999999999999765 35566666544210 000000 00 00011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+......... .......+++..+++.+++.. +......||+|+.|++....++..-.+
T Consensus 91 ~t~~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~------------- 155 (213)
T cd03262 91 LTVLENITLAPIKVKG--MSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPK------------- 155 (213)
T ss_pred CcHHHHHHhHHHHhcC--CCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCC-------------
Confidence 1111221110000000 001123445667777788854 456668999999999886654443111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|.+.+
T Consensus 156 --------llllDEP~~~LD~~~~~~l~~~l~~~~ 182 (213)
T cd03262 156 --------VMLFDEPTSALDPELVGEVLDVMKDLA 182 (213)
T ss_pred --------EEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 244667777777888888988888764
No 145
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=3.3e-09 Score=95.97 Aligned_cols=160 Identities=11% Similarity=0.098 Sum_probs=92.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~ 90 (299)
++|.+.+++.++|.||||||||||+++|++.+.+ +.+.+++.++.... ...+..+.. ....+.++..... .
T Consensus 43 is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~----~~~~~~~~~--~~i~~v~q~~~~~~~ 116 (269)
T cd03294 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMS----RKELRELRR--KKISMVFQSFALLPH 116 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccC----hhhhhhhhc--CcEEEEecCcccCCC
Confidence 5677899999999999999999999999998754 55667765543210 011111000 0001111111111 0
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.. ...... .......+++..+++.+++.. +......||+|+.|+++...++..-.+
T Consensus 117 ~tv~e~l~~-~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~------------- 180 (269)
T cd03294 117 RTVLENVAF-GLEVQG--VPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPD------------- 180 (269)
T ss_pred CcHHHHHHH-HHHhcC--CCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCC-------------
Confidence 111121110 000000 011223456667788888854 456668999999999987665543111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.|.+.|.+.
T Consensus 181 --------illLDEPt~~LD~~~~~~l~~~l~~~ 206 (269)
T cd03294 181 --------ILLMDEAFSALDPLIRREMQDELLRL 206 (269)
T ss_pred --------EEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 24466777788888888888888776
No 146
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.81 E-value=3e-09 Score=99.97 Aligned_cols=157 Identities=15% Similarity=0.199 Sum_probs=91.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|.||||||||||+|+|++... .+.+.+++.++..... ..+.+..+|+ .....+.
T Consensus 21 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~v~Q----------~~~l~p~ 88 (353)
T PRK10851 21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGFVFQ----------HYALFRH 88 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEEEec----------CcccCCC
Confidence 567789999999999999999999999999765 4567777766542100 0001111111 1111111
Q ss_pred -hhhHHHhhcCccchhhcCC--CccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 -ALRETIVEVPNITWEDIGG--LEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 92 -~~~~~l~~l~~~l~~~~~r--~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
...+.+. +.........+ .....+|+..+++.+++.. +.++...||||+.|++....++..-.+
T Consensus 89 ~tv~eni~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~----------- 156 (353)
T PRK10851 89 MTVFDNIA-FGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ----------- 156 (353)
T ss_pred CcHHHHHH-hhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC-----------
Confidence 1111111 11000000001 1223457778888888854 456678999999999887665543111
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++-+.+.+.+.|++.+
T Consensus 157 ----------llLLDEP~s~LD~~~r~~l~~~L~~l~ 183 (353)
T PRK10851 157 ----------ILLLDEPFGALDAQVRKELRRWLRQLH 183 (353)
T ss_pred ----------EEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 244566666677777777777776653
No 147
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=5.3e-09 Score=95.58 Aligned_cols=161 Identities=10% Similarity=0.092 Sum_probs=91.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~ 89 (299)
++|.+.+++.++|.||||||||||+++|++.+. .+.+.+++.++..... ......+.. ...+..+.. ..-
T Consensus 25 vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~---~~~~~~~~~---~ig~v~q~~~~~l~ 98 (288)
T PRK13643 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSK---QKEIKPVRK---KVGVVFQFPESQLF 98 (288)
T ss_pred eEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccc---cccHHHHHh---hEEEEecCcchhcc
Confidence 667789999999999999999999999999775 4667777766532100 000111110 001111110 000
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
.....+.+...+. ..-....+...|+..+++.+++ ..+ .+....||+|++|+++...++..-.+
T Consensus 99 ~~tv~~~l~~~~~---~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~----------- 164 (288)
T PRK13643 99 EETVLKDVAFGPQ---NFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPE----------- 164 (288)
T ss_pred cchHHHHHHhHHH---HcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCC-----------
Confidence 0111122110000 0000112334566777888888 344 45558899999999987766544222
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++-+...|.+.|++++
T Consensus 165 ----------illLDEPt~gLD~~~~~~l~~~l~~l~ 191 (288)
T PRK13643 165 ----------VLVLDEPTAGLDPKARIEMMQLFESIH 191 (288)
T ss_pred ----------EEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 233556666667777778877777653
No 148
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=7.5e-09 Score=93.40 Aligned_cols=159 Identities=11% Similarity=0.098 Sum_probs=92.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~ 90 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++... ....++ ....+.++.... ..
T Consensus 30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~------~~i~~v~q~~~~~~~ 99 (265)
T PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESW----SSKAFA------RKVAYLPQQLPAAEG 99 (265)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhC----CHHHHh------hheEEeccCCCCCCC
Confidence 567789999999999999999999999999765 46667776554321 011111 001122211111 11
Q ss_pred hhhhHHHhhcCccchhhcCCC-ccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGL-EGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~-p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
....+.+.............. ....+++..+++.+++.. +......||+|+.++++...++..-.+
T Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~------------ 167 (265)
T PRK10575 100 MTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSR------------ 167 (265)
T ss_pred ccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCC------------
Confidence 112222221100000000001 123456667778888854 456668899999999987665543221
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|.+.
T Consensus 168 ---------lllLDEPt~~LD~~~~~~~~~~l~~l 193 (265)
T PRK10575 168 ---------CLLLDEPTSALDIAHQVDVLALVHRL 193 (265)
T ss_pred ---------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 24466677777788888888888765
No 149
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.80 E-value=3.2e-09 Score=90.91 Aligned_cols=158 Identities=11% Similarity=0.124 Sum_probs=89.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~ 89 (299)
++|.+.+++.++|.||||||||||+++|++...+ +.+.+++.++... . .....+.. ...+.++... ..
T Consensus 11 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--~---~~~~~~~~---~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 11 LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYS--R---KGLLERRQ---RVGLVFQDPDDQLF 82 (190)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEcccc--c---cchHHHHh---hEEEEecChhhccc
Confidence 5678899999999999999999999999997654 5566666554210 0 00001000 0011111110 00
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.....+.+.. ...... .......+++..+++.+++.. +.+....||+|++|+++...++..-.+
T Consensus 83 ~~tv~~nl~~-~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~------------ 147 (190)
T TIGR01166 83 AADVDQDVAF-GPLNLG--LSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPD------------ 147 (190)
T ss_pred cccHHHHHHH-HHHHcC--CCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCC------------
Confidence 0111122110 000000 001122345667777888854 455668899999999987665443111
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|++.
T Consensus 148 ---------llllDEPt~~LD~~~~~~~~~~l~~~ 173 (190)
T TIGR01166 148 ---------VLLLDEPTAGLDPAGREQMLAILRRL 173 (190)
T ss_pred ---------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 24466777777788888888888765
No 150
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=5.8e-09 Score=90.74 Aligned_cols=156 Identities=10% Similarity=0.105 Sum_probs=92.9
Q ss_pred hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773 13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP 90 (299)
Q Consensus 13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~ 90 (299)
-++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++... ... + +...+.++......
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~----~~~--~------~~i~~~~q~~~~~~ 83 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAA----PPA--D------RPVSMLFQENNLFA 83 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcC----CHh--H------ccEEEEecccccCC
Confidence 46788999999999999999999999999998754 5566666554321 000 0 00011111111111
Q ss_pred -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
....+.+.. ... ..........+++..+++.+++.. +......||+|++++++...++..-.+
T Consensus 84 ~~tv~enl~~-~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~------------ 148 (211)
T cd03298 84 HLTVEQNVGL-GLS--PGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKP------------ 148 (211)
T ss_pred CCcHHHHHhc-ccc--cccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC------------
Confidence 111122210 000 000001123445667788888854 456668999999999987665543211
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++..
T Consensus 149 ---------llllDEP~~~LD~~~~~~l~~~l~~~~ 175 (211)
T cd03298 149 ---------VLLLDEPFAALDPALRAEMLDLVLDLH 175 (211)
T ss_pred ---------EEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 244667777778888888888887763
No 151
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.80 E-value=4.1e-09 Score=94.29 Aligned_cols=161 Identities=11% Similarity=0.171 Sum_probs=88.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||+|||||+++|++.+. .+.+.+++.++..... .....+ . ...+.++..
T Consensus 23 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~--~~~~~~---~---~i~~~~q~~ 94 (253)
T PRK14267 23 VDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV--DPIEVR---R---EVGMVFQYP 94 (253)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc--ChHHHh---h---ceeEEecCC
Confidence 467788999999999999999999999999864 4567777765531000 000110 0 001111111
Q ss_pred CCCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 87 ~~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
.... ....+.+... ...............++..+++.+++ ..+......||+|++|+++...++..-.+
T Consensus 95 ~~~~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~---- 169 (253)
T PRK14267 95 NPFPHLTIYDNVAIG-VKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPK---- 169 (253)
T ss_pred ccCCCCcHHHHHHHH-HHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCC----
Confidence 1111 1111222100 00000000011223445556666654 23455667899999999887665543111
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.+.+.|++..
T Consensus 170 -----------------llllDEP~~~LD~~~~~~l~~~l~~~~ 196 (253)
T PRK14267 170 -----------------ILLMDEPTANIDPVGTAKIEELLFELK 196 (253)
T ss_pred -----------------EEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 244566667777778888888887763
No 152
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=6.8e-09 Score=91.72 Aligned_cols=155 Identities=12% Similarity=0.197 Sum_probs=91.5
Q ss_pred hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773 13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP 90 (299)
Q Consensus 13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~ 90 (299)
-++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++... ... + ....+.++......
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~--~------~~i~~~~q~~~~~~ 84 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTT----PPS--R------RPVSMLFQENNLFS 84 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcC----Chh--h------ccEEEEeccccccc
Confidence 4678899999999999999999999999999765 45566776554321 000 0 00011111111111
Q ss_pred -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
....+.+. +.. ...........+++..+++.+++.. +.+....||+|++++++...++..-.+
T Consensus 85 ~~tv~e~l~-~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~------------ 149 (232)
T PRK10771 85 HLTVAQNIG-LGL--NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQP------------ 149 (232)
T ss_pred CCcHHHHHh-ccc--ccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCC------------
Confidence 11122221 110 0000001223456777888888855 456668999999999887665543221
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.|.+.|.+.
T Consensus 150 ---------lllLDEP~~gLD~~~~~~~~~~l~~~ 175 (232)
T PRK10771 150 ---------ILLLDEPFSALDPALRQEMLTLVSQV 175 (232)
T ss_pred ---------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 23355666667777777777777665
No 153
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.79 E-value=3.7e-09 Score=94.00 Aligned_cols=157 Identities=18% Similarity=0.230 Sum_probs=90.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++... ....++ . ...+.++......
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~~~~~~---~---~i~~~~q~~~~~~~ 89 (242)
T cd03295 20 LNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQ----DPVELR---R---KIGYVIQQIGLFPH 89 (242)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcC----ChHHhh---c---ceEEEccCccccCC
Confidence 5677899999999999999999999999997654 5566666554321 001111 0 0012221111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH---HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN---YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~---~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
....+.+... ..... .......+++..+++.+++. ........||+|+.|+++...++..-.+
T Consensus 90 ~tv~e~l~~~-~~~~~--~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~----------- 155 (242)
T cd03295 90 MTVEENIALV-PKLLK--WPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPP----------- 155 (242)
T ss_pred CcHHHHHHHH-HHHcC--CCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCC-----------
Confidence 1111222110 00000 00122345666777777775 3455668899999999887655443111
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|.+.+
T Consensus 156 ----------llllDEPt~~LD~~~~~~l~~~L~~~~ 182 (242)
T cd03295 156 ----------LLLMDEPFGALDPITRDQLQEEFKRLQ 182 (242)
T ss_pred ----------EEEecCCcccCCHHHHHHHHHHHHHHH
Confidence 244566677777788888888887763
No 154
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.78 E-value=3.7e-09 Score=97.51 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=94.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||+|||||+++|++.+.+ +.+.+++.++... . ..++ +...+.++......
T Consensus 26 vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~----~-~~~~------~~ig~v~q~~~~~~~ 94 (306)
T PRK13537 26 LSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSR----A-RHAR------QRVGVVPQFDNLDPD 94 (306)
T ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccc----h-HHHH------hcEEEEeccCcCCCC
Confidence 5678899999999999999999999999998764 5566776655321 0 0110 11122222221111
Q ss_pred hhhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
....+.+.... .+... .+...|+..+++.+++... .+....||+|+.|+++...++..-.
T Consensus 95 ~tv~e~l~~~~-----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P------------ 157 (306)
T PRK13537 95 FTVRENLLVFG-----RYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDP------------ 157 (306)
T ss_pred CcHHHHHHHHH-----HHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCC------------
Confidence 12222222110 01111 2234566677778888544 4556899999999998766554311
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+...|.+.|++.+
T Consensus 158 ---------~lllLDEPt~gLD~~~~~~l~~~l~~l~ 185 (306)
T PRK13537 158 ---------DVLVLDEPTTGLDPQARHLMWERLRSLL 185 (306)
T ss_pred ---------CEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 1245667777888888889988888864
No 155
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=2.3e-09 Score=97.03 Aligned_cols=156 Identities=12% Similarity=0.145 Sum_probs=90.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~ 89 (299)
++|.+.+++.++|.||||+|||||+++|++... .+.+.+++.++... ....++. ...+.++.. ...
T Consensus 28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~----~~~~~~~------~i~~v~q~~~~~~~ 97 (271)
T PRK13632 28 VSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKE----NLKEIRK------KIGIIFQNPDNQFI 97 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcC----CHHHHhc------ceEEEEeCHHHhcC
Confidence 457789999999999999999999999999865 45666776554321 0011110 001111110 000
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.....+.+.. . .............++..+++.+++.. +......||+|++|+++...++..-.+
T Consensus 98 ~~tv~enl~~-~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~------------ 162 (271)
T PRK13632 98 GATVEDDIAF-G--LENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPE------------ 162 (271)
T ss_pred cccHHHHHHh-H--HHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence 0111122210 0 00000011123345667788888854 456668999999999887665543221
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|++.
T Consensus 163 ---------lllLDEP~~gLD~~~~~~l~~~l~~~ 188 (271)
T PRK13632 163 ---------IIIFDESTSMLDPKGKREIKKIMVDL 188 (271)
T ss_pred ---------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 24456666777778888888888765
No 156
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=3e-09 Score=93.20 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=90.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++... ...+ .+.++......
T Consensus 23 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-----~~~i----------~~v~q~~~~~~~ 87 (220)
T cd03293 23 ISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGP-----GPDR----------GYVFQQDALLPW 87 (220)
T ss_pred eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-----cCcE----------EEEecccccccC
Confidence 4677889999999999999999999999997653 5566666544210 0000 11111000000
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+... ..... .......+++..+++.+++.. +.+....||+|++|++....++..-.
T Consensus 88 ~tv~e~l~~~-~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p-------------- 150 (220)
T cd03293 88 LTVLDNVALG-LELQG--VPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDP-------------- 150 (220)
T ss_pred CCHHHHHHHH-HHHcC--CCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC--------------
Confidence 0111111100 00000 001223456667788888854 45666899999999988766554311
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
..+..+|+....++.+.+.|.+.|++.
T Consensus 151 -------~lllLDEPt~~LD~~~~~~~~~~l~~~ 177 (220)
T cd03293 151 -------DVLLLDEPFSALDALTREQLQEELLDI 177 (220)
T ss_pred -------CEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 134567777888889999999988775
No 157
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.78 E-value=4.5e-09 Score=92.72 Aligned_cols=158 Identities=13% Similarity=0.144 Sum_probs=90.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|+||||||||||+++|++... .+.+.+++.++... ..... .. ....+.++......
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~---~~--~~i~~~~q~~~~~~~ 89 (232)
T cd03218 19 VSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKL----PMHKR---AR--LGIGYLPQEASIFRK 89 (232)
T ss_pred ceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccC----CHhHH---Hh--ccEEEecCCcccccc
Confidence 467788999999999999999999999999765 35566666544221 00000 00 00011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+... ..... .......+++..+++.+++... ......||+|+.|++....++..-.+
T Consensus 90 ~tv~~~l~~~-~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~------------- 153 (232)
T cd03218 90 LTVEENILAV-LEIRG--LSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK------------- 153 (232)
T ss_pred CcHHHHHHHH-HHhcC--CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 1112222110 00000 0012234466677788888554 45567899999999887655443111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++..
T Consensus 154 --------llllDEPt~~LD~~~~~~~~~~l~~~~ 180 (232)
T cd03218 154 --------FLLLDEPFAGVDPIAVQDIQKIIKILK 180 (232)
T ss_pred --------EEEecCCcccCCHHHHHHHHHHHHHHH
Confidence 244667777777888888888887663
No 158
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=6e-09 Score=95.20 Aligned_cols=161 Identities=11% Similarity=0.105 Sum_probs=92.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~ 89 (299)
++|.+.+|+.++|.||||+|||||+++|++.+.+ +.+.+++.++...........++ . ...+.++... ..
T Consensus 26 vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~---~---~ig~v~q~~~~~~~ 99 (287)
T PRK13641 26 ISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLR---K---KVSLVFQFPEAQLF 99 (287)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH---h---ceEEEEeChhhhhc
Confidence 4577899999999999999999999999997754 56777776553210000000110 0 0011111100 00
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
.....+.+.. ... .......+..+|+..+++.+++. . ..+....||+|++|+++...++..-.+
T Consensus 100 ~~tv~e~l~~-~~~--~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~----------- 165 (287)
T PRK13641 100 ENTVLKDVEF-GPK--NFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPE----------- 165 (287)
T ss_pred cchHHHHHHH-HHH--HcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCC-----------
Confidence 0111121110 000 00001122345677788888884 4 456668999999999987665543221
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++.+
T Consensus 166 ----------lLlLDEPt~gLD~~~~~~l~~~l~~l~ 192 (287)
T PRK13641 166 ----------ILCLDEPAAGLDPEGRKEMMQLFKDYQ 192 (287)
T ss_pred ----------EEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 244667777777888888888887764
No 159
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.78 E-value=1.3e-08 Score=89.01 Aligned_cols=152 Identities=13% Similarity=0.163 Sum_probs=87.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|.||||+|||||+++|++... .+.+.+++.++... .....+ ....+.++.......
T Consensus 23 i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~~~~------~~i~~~~q~~~~~~~ 92 (220)
T cd03245 23 VSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQL----DPADLR------RNIGYVPQDVTLFYG 92 (220)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHC----CHHHHH------hhEEEeCCCCccccc
Confidence 467789999999999999999999999999765 35566665544221 000010 001122211111111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKV------------TNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~------------t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
...+.+.. . .. ....+++..+++.+++..+..+ ...||+|+++++....++..-.+
T Consensus 93 tv~e~l~~-~-------~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~--- 160 (220)
T cd03245 93 TLRDNITL-G-------AP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP--- 160 (220)
T ss_pred hHHHHhhc-C-------CC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC---
Confidence 11111110 0 00 1112344455555666544332 25899999999887665543221
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
-+..+|+....++.+.+.|.+.|++...
T Consensus 161 ------------------llllDEPt~~LD~~~~~~l~~~l~~~~~ 188 (220)
T cd03245 161 ------------------ILLLDEPTSAMDMNSEERLKERLRQLLG 188 (220)
T ss_pred ------------------EEEEeCccccCCHHHHHHHHHHHHHhcC
Confidence 2446677778888899999999988753
No 160
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.78 E-value=1e-08 Score=101.32 Aligned_cols=151 Identities=15% Similarity=0.220 Sum_probs=87.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
.++.+++|+.++|+||+|||||||++.|++...+ +.+.+++.++... . ..++..+ .+.++....-..
T Consensus 354 isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~----~~lr~~i------~~V~Q~~~lF~~ 422 (529)
T TIGR02868 354 VSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-Q----DELRRRI------SVFAQDAHLFDT 422 (529)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-H----HHHHhhe------EEEccCcccccc
Confidence 4567899999999999999999999999997764 5677777665421 1 1111100 111111111112
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH------------HHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY------------IAKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~------------LA~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.- .+....++++...++..++++ +...-..+||||+|+++.+.++..-.+
T Consensus 423 TI~eNI~~---------g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~--- 490 (529)
T TIGR02868 423 TVRDNLRL---------GRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAP--- 490 (529)
T ss_pred cHHHHHhc---------cCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCC---
Confidence 22222211 000012233444444444422 223335699999999987665543111
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
-+..+|+....+.-|.+.+.+++.+..+
T Consensus 491 ------------------iliLDE~TSaLD~~te~~I~~~l~~~~~ 518 (529)
T TIGR02868 491 ------------------ILLLDEPTEHLDAGTESELLEDLLAALS 518 (529)
T ss_pred ------------------EEEEeCCcccCCHHHHHHHHHHHHHhcC
Confidence 2446778888888899999999987643
No 161
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.78 E-value=6.7e-09 Score=92.61 Aligned_cols=159 Identities=12% Similarity=0.201 Sum_probs=89.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh-----cCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS 88 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l-----~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~ 88 (299)
++|.+.+++.++|.||||+|||||+++|++.. ..+.+.+++.++... .....+ ....+.++....
T Consensus 21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~----~~~~~~------~~i~~~~q~~~l 90 (246)
T PRK14269 21 INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ----DVVALR------KNVGMVFQQPNV 90 (246)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccC----CHHHHh------hhEEEEecCCcc
Confidence 46778999999999999999999999999975 246677777665321 000111 000111111111
Q ss_pred CchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH----H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 89 SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN----Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIR 163 (299)
Q Consensus 89 ~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~----~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~ 163 (299)
-.....+.+.. ................++..+++.+++. . +......+|+|+.++++...++..-.+
T Consensus 91 ~~~tv~eni~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~------- 162 (246)
T PRK14269 91 FVKSIYENISY-APKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPK------- 162 (246)
T ss_pred ccccHHHHhhh-HHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCC-------
Confidence 11111111110 0000000000112334556677777772 2 334557899999999887665543221
Q ss_pred HHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 164 REREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+...|.+.|.+.+
T Consensus 163 --------------lllLDEP~~~LD~~~~~~l~~~l~~~~ 189 (246)
T PRK14269 163 --------------LLLLDEPTSALDPISSGVIEELLKELS 189 (246)
T ss_pred --------------EEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 244666777777788888888887764
No 162
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.77 E-value=6.7e-09 Score=93.96 Aligned_cols=161 Identities=11% Similarity=0.062 Sum_probs=91.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++.... ...+..+. ....+.++.......
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~----~~~~~~~~---~~i~~v~q~~~~~~~ 98 (269)
T PRK11831 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMS----RSRLYTVR---KRMSMLFQSGALFTD 98 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccC----hhhHHHHh---hcEEEEecccccCCC
Confidence 567889999999999999999999999999865 455666665443210 01110000 000111111111111
Q ss_pred -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
...+.+......... ........++..+++.+++..+ ......||+|++|+++...++..-.+
T Consensus 99 ~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~------------- 163 (269)
T PRK11831 99 MNVFDNVAYPLREHTQ--LPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPD------------- 163 (269)
T ss_pred CCHHHHHHHHHHHccC--CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 111211110000000 0011223455667778888554 45568899999999987665543211
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++..
T Consensus 164 --------lllLDEPt~~LD~~~~~~l~~~l~~~~ 190 (269)
T PRK11831 164 --------LIMFDEPFVGQDPITMGVLVKLISELN 190 (269)
T ss_pred --------EEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 244667777788888888888888763
No 163
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=1.7e-09 Score=98.74 Aligned_cols=158 Identities=11% Similarity=0.118 Sum_probs=90.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~ 89 (299)
++|.+.+|+.++|.||||||||||+++|++.+. .+.+.+++.++..... ....++. ...+.++... ..
T Consensus 26 vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~--~~~~~~~------~ig~v~q~~~~~~~ 97 (287)
T PRK13637 26 VNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKV--KLSDIRK------KVGLVFQYPEYQLF 97 (287)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCc--cHHHHhh------ceEEEecCchhccc
Confidence 467789999999999999999999999999775 4567777765532100 0001110 0011111110 00
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH--H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN--Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER 166 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~--~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~ 166 (299)
.....+.+.... ...-....+..+++..+++.+++. . .......||||++|+++...++..-.+
T Consensus 98 ~~tv~e~l~~~~---~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~---------- 164 (287)
T PRK13637 98 EETIEKDIAFGP---INLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPK---------- 164 (287)
T ss_pred cccHHHHHHhHH---HHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCC----------
Confidence 111112221000 000000112345667788888884 3 455668999999999987765544222
Q ss_pred HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+...|.+.|++.
T Consensus 165 -----------llllDEPt~gLD~~~~~~l~~~l~~l 190 (287)
T PRK13637 165 -----------ILILDEPTAGLDPKGRDEILNKIKEL 190 (287)
T ss_pred -----------EEEEECCccCCCHHHHHHHHHHHHHH
Confidence 23455666666777777777777665
No 164
>KOG0732|consensus
Probab=98.77 E-value=1.6e-09 Score=111.33 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=49.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
-+|.|+|||||+.+.+.++++|-+ ||.|||.|-+ ++--.-|+||+|||||||||.-
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~--PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLL--PLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHh--HhhhhhHhhhcccCCCcceeecCCCCCchhHHH
Confidence 359999999999999999999999 9999998874 4445558999999999999864
No 165
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.77 E-value=8.6e-09 Score=92.67 Aligned_cols=163 Identities=14% Similarity=0.147 Sum_probs=92.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~ 90 (299)
++|.+.+++.++|.|+||||||||+++|++... .+.+.+++.++... ....++. ...+.++.... ..
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~----~~~~~~~------~i~~~~q~~~~~~~ 90 (258)
T PRK13548 21 VSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADW----SPAELAR------RRAVLPQHSSLSFP 90 (258)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccC----CHHHhhh------heEEEccCCcCCCC
Confidence 457788999999999999999999999999765 45566666544221 0011110 01122211111 11
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+....... ........+++..+++.+++.. +......||+|+.|+++...++....|.
T Consensus 91 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~------------ 155 (258)
T PRK13548 91 FTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEP------------ 155 (258)
T ss_pred CCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc------------
Confidence 11222221100000 0001122345667777788854 4566689999999999877655421000
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
......+..+|+....++.+.+.|.+.|+++.
T Consensus 156 ---~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 187 (258)
T PRK13548 156 ---DGPPRWLLLDEPTSALDLAHQHHVLRLARQLA 187 (258)
T ss_pred ---CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 00011345667777778888888888887764
No 166
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.77 E-value=6e-09 Score=92.51 Aligned_cols=161 Identities=18% Similarity=0.166 Sum_probs=90.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh----cCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l----~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~ 89 (299)
++|.+.+++.++|.||||||||||+++|++.. ..+.+.+++.++..... ....+. ...+.++.....
T Consensus 19 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~---~~~~~~------~i~~v~q~~~~~ 89 (243)
T TIGR01978 19 VNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP---DERARA------GLFLAFQYPEEI 89 (243)
T ss_pred cceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCH---HHhhcc------ceEeeecccccc
Confidence 56788999999999999999999999999973 34667777655432100 000000 001111111111
Q ss_pred c-hhhhHHHhhcCccchhh----cCCCccHHHHHhhhcccCCHH-HHH-HhcC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 P-SALRETIVEVPNITWED----IGGLEGVKRELQELVQDVDLN-YIA-KVTN-GFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 90 ~-~~~~~~l~~l~~~l~~~----~~r~p~~~~R~~~l~~~v~l~-~LA-~~t~-glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
. ....+.+.......... .....+..+++..+++.+++. .+. .... .||+|++|+++...++..-.+
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~----- 164 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPK----- 164 (243)
T ss_pred CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCC-----
Confidence 1 11111111100000000 000112245666777778884 444 3444 599999999987665543211
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++.+
T Consensus 165 ----------------llllDEPt~~LD~~~~~~l~~~l~~~~ 191 (243)
T TIGR01978 165 ----------------LAILDEIDSGLDIDALKIVAEGINRLR 191 (243)
T ss_pred ----------------EEEecCCcccCCHHHHHHHHHHHHHHH
Confidence 245667777888888999999888764
No 167
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.77 E-value=7.1e-09 Score=90.00 Aligned_cols=151 Identities=17% Similarity=0.158 Sum_probs=90.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++... ..... ...+.++......
T Consensus 19 ~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---------~~~~~---~i~~~~q~~~~~~~ 86 (208)
T cd03268 19 ISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN---------IEALR---RIGALIEAPGFYPN 86 (208)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch---------HHHHh---hEEEecCCCccCcc
Confidence 4677889999999999999999999999997653 4556665443210 11100 0112222111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+... .. .... ..+++..+++.+++.. +.+....+|+|+.++++...++..-.+
T Consensus 87 ~tv~e~l~~~-~~----~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~------------- 146 (208)
T cd03268 87 LTARENLRLL-AR----LLGI--RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPD------------- 146 (208)
T ss_pred CcHHHHHHHH-HH----hcCC--cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 1111221110 00 0001 2445666777788854 456668899999999887665443111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|.+.+
T Consensus 147 --------llllDEPt~~LD~~~~~~l~~~l~~~~ 173 (208)
T cd03268 147 --------LLILDEPTNGLDPDGIKELRELILSLR 173 (208)
T ss_pred --------EEEECCCcccCCHHHHHHHHHHHHHHH
Confidence 244667777788888889988888764
No 168
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.77 E-value=3.1e-09 Score=94.01 Aligned_cols=161 Identities=13% Similarity=0.157 Sum_probs=91.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||||||||+++|++.+. .+.+.+++.++... ..... .. ....+.++......
T Consensus 19 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~---~~--~~i~~v~q~~~l~~~ 89 (236)
T cd03219 19 VSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGL----PPHEI---AR--LGIGRTFQIPRLFPE 89 (236)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCC----CHHHH---Hh--cCEEEEecccccccC
Confidence 467789999999999999999999999999765 35566666554321 00000 00 00011111111111
Q ss_pred hhhhHHHhhcCccc-hhhcC------CCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNIT-WEDIG------GLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEI 162 (299)
Q Consensus 91 ~~~~~~l~~l~~~l-~~~~~------r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~ 162 (299)
....+.+....... ...+. ......+++..+++.+++.. +......||+|++|+++...++..-.+
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~------ 163 (236)
T cd03219 90 LTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPK------ 163 (236)
T ss_pred CCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCC------
Confidence 11122221100000 00000 01223446667777888854 455668899999999887665543111
Q ss_pred HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++..
T Consensus 164 ---------------llllDEPt~~LD~~~~~~l~~~l~~~~ 190 (236)
T cd03219 164 ---------------LLLLDEPAAGLNPEETEELAELIRELR 190 (236)
T ss_pred ---------------EEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 244667777778888888988887764
No 169
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=2.2e-09 Score=97.48 Aligned_cols=156 Identities=12% Similarity=0.113 Sum_probs=90.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~ 89 (299)
++|.+.+|+.++|+|+||+|||||+++|++...+ +.+.+++.++... ....+ ... ..+.++... ..
T Consensus 23 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~---~~~---i~~v~q~~~~~~~ 92 (277)
T PRK13652 23 INFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKE----NIREV---RKF---VGLVFQNPDDQIF 92 (277)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC----CHHHH---Hhh---eEEEecCcccccc
Confidence 5677899999999999999999999999997654 5566676554321 11111 110 011111100 00
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.....+.+.. ... ... .......+++..+++.+++.. +......||+|+++++....++..-.+
T Consensus 93 ~~tv~~~l~~-~~~-~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~------------ 157 (277)
T PRK13652 93 SPTVEQDIAF-GPI-NLG-LDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQ------------ 157 (277)
T ss_pred cccHHHHHHh-HHH-HcC-CCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence 1111122210 000 000 011123345667788888854 456668999999999887655443221
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+++....++.+.+.|.+.|++.
T Consensus 158 ---------llilDEPt~gLD~~~~~~l~~~l~~l 183 (277)
T PRK13652 158 ---------VLVLDEPTAGLDPQGVKELIDFLNDL 183 (277)
T ss_pred ---------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 24466777777888888888888765
No 170
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.76 E-value=8.5e-09 Score=91.99 Aligned_cols=160 Identities=13% Similarity=0.246 Sum_probs=90.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.|+||||||||+++|++... .+.+.+++.++.... .....++. ...+.++..
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~--~~~~~~~~------~i~~v~q~~ 91 (247)
T TIGR00972 20 INLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK--IDVVELRR------RVGMVFQKP 91 (247)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc--cchHHHHh------heEEEecCc
Confidence 577889999999999999999999999999774 445666665543210 00000100 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
........+.+.. ...... ........+++..+++.+++. .+......||+|++|+++...++..-.+
T Consensus 92 ~~~~~tv~e~l~~-~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~----- 164 (247)
T TIGR00972 92 NPFPMSIYDNIAY-GPRLHG-IKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPE----- 164 (247)
T ss_pred ccCCCCHHHHHHh-HHHhcC-CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCC-----
Confidence 1111111111110 000000 000112234556667777763 3456668999999999887665543111
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|++.+
T Consensus 165 ----------------llllDEPt~~LD~~~~~~l~~~l~~~~ 191 (247)
T TIGR00972 165 ----------------VLLLDEPTSALDPIATGKIEELIQELK 191 (247)
T ss_pred ----------------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 244667777778888888988888764
No 171
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=7e-09 Score=93.14 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=90.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++... . ..+ .+.++......
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~---~~~----------~~v~q~~~~~~~ 84 (255)
T PRK11248 20 INLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP--G---AER----------GVVFQNEGLLPW 84 (255)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC--C---CcE----------EEEeCCCccCCC
Confidence 567789999999999999999999999999865 45566666554321 0 000 11111111000
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.. ...... .......+++..+++.+++.. +.+....||||+.++++...++..-.
T Consensus 85 ~tv~e~l~~-~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p-------------- 147 (255)
T PRK11248 85 RNVQDNVAF-GLQLAG--VEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANP-------------- 147 (255)
T ss_pred CcHHHHHHh-HHHHcC--CCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCC--------------
Confidence 111111110 000000 001223456677788888854 44566889999999998766554311
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
..+..+|+....++.+.+.|.+.|++.
T Consensus 148 -------~lllLDEPt~~LD~~~~~~l~~~L~~~ 174 (255)
T PRK11248 148 -------QLLLLDEPFGALDAFTREQMQTLLLKL 174 (255)
T ss_pred -------CEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 124466777777888888888888775
No 172
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.76 E-value=1e-08 Score=90.98 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=92.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.|+||+|||||+++|++... .+.+.+++.++... . .....+.. ...+.++......
T Consensus 20 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~-~~~~~~~~---~i~~~~q~~~~~~~ 91 (240)
T PRK09493 20 IDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDP----K-VDERLIRQ---EAGMVFQQFYLFPH 91 (240)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC----C-hhHHHHhh---ceEEEecccccCCC
Confidence 467788999999999999999999999999765 45566776554321 0 00111110 0011221111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+......... .......+++..+++.+++.. +......||+|+.++++...++..-.+
T Consensus 92 ~tv~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~------------- 156 (240)
T PRK09493 92 LTALENVMFGPLRVRG--ASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPK------------- 156 (240)
T ss_pred CcHHHHHHhHHHHhcC--CCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCC-------------
Confidence 1111222100000000 011223445667788888854 456668899999999987665543111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|++.+
T Consensus 157 --------llllDEP~~~LD~~~~~~l~~~l~~~~ 183 (240)
T PRK09493 157 --------LMLFDEPTSALDPELRHEVLKVMQDLA 183 (240)
T ss_pred --------EEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 244667777777888888888887663
No 173
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.76 E-value=6.4e-09 Score=92.14 Aligned_cols=153 Identities=17% Similarity=0.218 Sum_probs=89.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~ 90 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++... ... .+. ...+.++.... ..
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~----~~~----~~~---~i~~~~q~~~~~~~ 88 (236)
T TIGR03864 20 VSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRA----PRA----ALA---RLGVVFQQPTLDLD 88 (236)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccC----Chh----hhh---hEEEeCCCCCCccc
Confidence 5677899999999999999999999999997653 5566666554221 000 000 01122211111 11
Q ss_pred hhhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
....+.+.. .. ..... ....+++..+++.+++.. +......||+|++|+++...++..-.+
T Consensus 89 ~t~~~~l~~-~~----~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~----------- 152 (236)
T TIGR03864 89 LSVRQNLRY-HA----ALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPA----------- 152 (236)
T ss_pred CcHHHHHHH-HH----HhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC-----------
Confidence 111122211 00 00011 123345667777778854 445668899999999887665543211
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.|.+.|++.
T Consensus 153 ----------llllDEP~~~LD~~~~~~l~~~l~~~ 178 (236)
T TIGR03864 153 ----------LLLLDEPTVGLDPASRAAIVAHVRAL 178 (236)
T ss_pred ----------EEEEcCCccCCCHHHHHHHHHHHHHH
Confidence 24466677777788888888887765
No 174
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=7.6e-09 Score=90.02 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=89.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.++ .++|.||||||||||+++|++.+.+ +.+.+++.++... . ...+ . ...+.++......
T Consensus 19 vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~-~~~~---~---~i~~~~q~~~~~~~ 86 (211)
T cd03264 19 VSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQ----P-QKLR---R---RIGYLPQEFGVYPN 86 (211)
T ss_pred eeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccc----h-HHHH---h---heEEecCCCccccc
Confidence 46778888 9999999999999999999997654 5566666544211 0 1110 0 0011121111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+..... ... ....+..+++..+++.+++.. +......||+|++++++...++..-.+
T Consensus 87 ~tv~~~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~------------- 150 (211)
T cd03264 87 FTVREFLDYIAW-LKG--IPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS------------- 150 (211)
T ss_pred CCHHHHHHHHHH-HhC--CCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 111122111000 000 001123455667778888854 445668899999999987665543111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.+.+.|++.+
T Consensus 151 --------llllDEPt~~LD~~~~~~l~~~l~~~~ 177 (211)
T cd03264 151 --------ILIVDEPTAGLDPEERIRFRNLLSELG 177 (211)
T ss_pred --------EEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 244667777778888888988888774
No 175
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=9.5e-09 Score=94.04 Aligned_cols=160 Identities=13% Similarity=0.120 Sum_probs=91.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~ 89 (299)
++|.+.+++.++|.||||||||||+++|++...+ +.+.+++.++...........++. ...+.++... ..
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~------~ig~v~q~~~~~l~ 99 (290)
T PRK13634 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK------KVGIVFQFPEHQLF 99 (290)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHh------hEEEEeeCchhhhh
Confidence 5678899999999999999999999999997654 567777765532100000011110 0011111100 00
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
.....+.+..... ..-....+..+++..+++.+++. .+ ......||+|++|++....++..-.+
T Consensus 100 ~~tv~eni~~~~~---~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~----------- 165 (290)
T PRK13634 100 EETVEKDICFGPM---NFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPE----------- 165 (290)
T ss_pred hhhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC-----------
Confidence 0111111110000 00000112345677788888884 55 45568899999999887665543221
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+...|.+.|+++
T Consensus 166 ----------llllDEPt~~LD~~~~~~l~~~L~~l 191 (290)
T PRK13634 166 ----------VLVLDEPTAGLDPKGRKEMMEMFYKL 191 (290)
T ss_pred ----------EEEEECCcccCCHHHHHHHHHHHHHH
Confidence 24456666677777888888777765
No 176
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.75 E-value=8.2e-09 Score=87.79 Aligned_cols=123 Identities=13% Similarity=0.170 Sum_probs=74.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
+++.++++....|+||||+|||||+..+++.+. .+.+.+++.++.+.. .+.+.... ++..+.......
T Consensus 20 isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~----s~~LAk~l------SILkQ~N~i~~r 89 (252)
T COG4604 20 VSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTP----SKELAKKL------SILKQENHINSR 89 (252)
T ss_pred ceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCC----hHHHHHHH------HHHHhhchhhhe
Confidence 567889999999999999999999999999876 567888988886542 12221111 222222221111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHH--HhhhcccCCHHHHHHh-cCCCCHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRE--LQELVQDVDLNYIAKV-TNGFSGADLTEICQR 148 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R--~~~l~~~v~l~~LA~~-t~glSggDl~~Lv~~ 148 (299)
...+.+..+-... -..+ .++.+.| +...++-+++..|..+ -..+|||+.|+...+
T Consensus 90 lTV~dLv~FGRfP-YSqG-Rlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIA 147 (252)
T COG4604 90 LTVRDLVGFGRFP-YSQG-RLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIA 147 (252)
T ss_pred eEHHHHhhcCCCc-ccCC-CCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhh
Confidence 1223333221100 0112 2333333 3467777888777644 488999999987654
No 177
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=4.8e-08 Score=93.93 Aligned_cols=149 Identities=16% Similarity=0.218 Sum_probs=89.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
.+|.+.+|+.|.|.|++||||||++..|++...+ +.+.+++.++... .++.+++.+. +..++...-+.
T Consensus 357 ~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l----~~~~~~e~i~------vl~Qr~hlF~~ 426 (573)
T COG4987 357 FNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL----DEQALRETIS------VLTQRVHLFSG 426 (573)
T ss_pred cceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhC----ChhhHHHHHh------hhccchHHHHH
Confidence 4566789999999999999999999999997654 5566676666543 2333333221 11111111112
Q ss_pred hhhHHHhhcCccchhhcCCCcc-HHHHHhhhcccCCHHHHHH------------hcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEG-VKRELQELVQDVDLNYIAK------------VTNGFSGADLTEICQRACKLAIRQSI 158 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~-~~~R~~~l~~~v~l~~LA~------------~t~glSggDl~~Lv~~A~~~a~~r~~ 158 (299)
+.++.+.- ..|+ ..+-...++++++++++.. .-+.||||+++++....++..
T Consensus 427 Tlr~NL~l----------A~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~----- 491 (573)
T COG4987 427 TLRDNLRL----------ANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH----- 491 (573)
T ss_pred HHHHHHhh----------cCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc-----
Confidence 22222210 1122 1223334556666654432 236799999999876544332
Q ss_pred HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
+ .-.+..+|+++..+++|.+++..-+.+.
T Consensus 492 ------------d----apl~lLDEPTegLD~~TE~~vL~ll~~~ 520 (573)
T COG4987 492 ------------D----APLWLLDEPTEGLDPITERQVLALLFEH 520 (573)
T ss_pred ------------C----CCeEEecCCcccCChhhHHHHHHHHHHH
Confidence 1 1135578888999999999988765543
No 178
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.75 E-value=9.4e-09 Score=91.44 Aligned_cols=152 Identities=13% Similarity=0.182 Sum_probs=88.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++... .....+. ...+.++.......
T Consensus 22 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~----~~~~~~~------~i~~~~q~~~~~~~ 91 (241)
T PRK14250 22 ISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTI----DVIDLRR------KIGMVFQQPHLFEG 91 (241)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhc----ChHHhhh------cEEEEecCchhchh
Confidence 567788999999999999999999999999765 45666776554321 0001100 00111111111011
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
...+.+. +... .. .....++..+++.+++. . ..+....||+|+.|+++...++..-.+
T Consensus 92 tv~e~l~-~~~~----~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~------------- 151 (241)
T PRK14250 92 TVKDNIE-YGPM----LK--GEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPE------------- 151 (241)
T ss_pred hHHHHHh-cchh----hc--CcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC-------------
Confidence 1111111 0000 00 11234566677777773 3 455668899999999987665543111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.+.+.|++.
T Consensus 152 --------llllDEPt~~LD~~~~~~l~~~l~~~ 177 (241)
T PRK14250 152 --------VLLLDEPTSALDPTSTEIIEELIVKL 177 (241)
T ss_pred --------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 24466677777778888888888775
No 179
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.75 E-value=7.4e-09 Score=95.25 Aligned_cols=154 Identities=17% Similarity=0.177 Sum_probs=93.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++... ...++ . ...+.++......
T Consensus 21 is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~-----~~~~~---~---~ig~~~q~~~l~~~ 89 (301)
T TIGR03522 21 VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN-----PKEVQ---R---NIGYLPEHNPLYLD 89 (301)
T ss_pred eEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-----hHHHH---h---ceEEecCCCCCCCC
Confidence 4677899999999999999999999999997654 5566666544221 11111 1 0122222211111
Q ss_pred hhhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
....+.+... ..+...+ ...++...+++.+++.. +.+....||+|++|++....++..-.+
T Consensus 90 ~tv~e~l~~~-----~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~----------- 153 (301)
T TIGR03522 90 MYVREYLQFI-----AGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPK----------- 153 (301)
T ss_pred CcHHHHHHHH-----HHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCC-----------
Confidence 1222222210 0011112 23456777888888854 446668899999999987665543211
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+++....++.+.+.|.+.+++++
T Consensus 154 ----------lliLDEPt~gLD~~~~~~l~~~l~~~~ 180 (301)
T TIGR03522 154 ----------VLILDEPTTGLDPNQLVEIRNVIKNIG 180 (301)
T ss_pred ----------EEEEcCCcccCCHHHHHHHHHHHHHhc
Confidence 244667777778888888888888874
No 180
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.75 E-value=6.3e-09 Score=97.87 Aligned_cols=159 Identities=11% Similarity=0.146 Sum_probs=92.1
Q ss_pred hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773 13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP 90 (299)
Q Consensus 13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~ 90 (299)
-++|.+.+++.++|.||||||||||+++|++...+ +.+.+++.++....... ..... . +...+.++....-.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~---~~~~~-~--~~i~~v~q~~~l~~ 88 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGI---FLPPE-K--RRIGYVFQEARLFP 88 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCcccc---ccchh-h--CCeEEEecCCccCC
Confidence 36788899999999999999999999999998754 55667766553210000 00000 0 00011111111111
Q ss_pred -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
....+.+.. .. .. ....+..+++..+++.+++..+ .+....||||++|+++...++..-.+
T Consensus 89 ~~tv~enl~~-~~--~~--~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~------------ 151 (354)
T TIGR02142 89 HLSVRGNLRY-GM--KR--ARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR------------ 151 (354)
T ss_pred CCcHHHHHHH-Hh--hc--cChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCC------------
Confidence 111122210 00 00 0112234567778888888654 45568899999999987765543221
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|++.
T Consensus 152 ---------lllLDEPts~LD~~~~~~l~~~L~~l 177 (354)
T TIGR02142 152 ---------LLLMDEPLAALDDPRKYEILPYLERL 177 (354)
T ss_pred ---------EEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence 24466677777777788888877765
No 181
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.75 E-value=8e-09 Score=91.71 Aligned_cols=156 Identities=15% Similarity=0.183 Sum_probs=89.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~ 90 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++..... ....+ .+.++..... .
T Consensus 21 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i----------~~v~q~~~~~~~ 88 (239)
T cd03296 21 VSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV----------GFVFQHYALFRH 88 (239)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce----------EEEecCCcccCC
Confidence 4677899999999999999999999999998653 556666654422100 00001 1111111111 0
Q ss_pred hhhhHHHhhcCccchhhcC--CCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIG--GLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~--r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
....+.+.. ......... ......+++..+++.+++..+ ......||+|++|+++...++..-.+
T Consensus 89 ~tv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~----------- 156 (239)
T cd03296 89 MTVFDNVAF-GLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPK----------- 156 (239)
T ss_pred CCHHHHHhh-hhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC-----------
Confidence 111121110 000000000 011223456677777888554 45568899999999987665543211
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.|.+.|.+.
T Consensus 157 ----------llllDEP~~~LD~~~~~~l~~~l~~~ 182 (239)
T cd03296 157 ----------VLLLDEPFGALDAKVRKELRRWLRRL 182 (239)
T ss_pred ----------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 24466677777778888888888765
No 182
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=1.6e-08 Score=90.75 Aligned_cols=159 Identities=13% Similarity=0.126 Sum_probs=89.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.|+||+|||||+++|++...+ +.+.+++.++... ....++ ....+.++......
T Consensus 21 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~------~~i~~~~q~~~~~~~ 90 (255)
T PRK11231 21 LSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISML----SSRQLA------RRLALLPQHHLTPEG 90 (255)
T ss_pred eeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHC----CHHHHh------hheEEecccCCCCCC
Confidence 4677899999999999999999999999997653 5566666544221 000111 00011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCC-ccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGL-EGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~-p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
....+.+..........+... ....+++..+++.+++... ......||+|++++++...++..-.+
T Consensus 91 ~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~------------ 158 (255)
T PRK11231 91 ITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTP------------ 158 (255)
T ss_pred ccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCC------------
Confidence 112222211000000000101 1224456677777788544 45567899999999987665543221
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|.+.
T Consensus 159 ---------llllDEP~~~LD~~~~~~l~~~l~~l 184 (255)
T PRK11231 159 ---------VVLLDEPTTYLDINHQVELMRLMREL 184 (255)
T ss_pred ---------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 24456666677777888888888765
No 183
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=1.1e-08 Score=91.68 Aligned_cols=160 Identities=11% Similarity=0.186 Sum_probs=88.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.|+||||||||+++|++.+. .+.+.+++.++.... .....++. ...+.++..
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~--~~~~~~~~------~i~~v~q~~ 97 (254)
T PRK14273 26 INIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN--FDILELRR------KIGMVFQTP 97 (254)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccc--ccHHHHhh------ceEEEeecc
Confidence 567789999999999999999999999999775 356777765543110 00000100 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
..-.....+.+..... ... ........+++..+++.+++ ..+......||||++|+++...++..-.
T Consensus 98 ~~~~~tv~eni~~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p------ 169 (254)
T PRK14273 98 NPFLMSIYDNISYGPK-IHG-TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEP------ 169 (254)
T ss_pred ccccCcHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCC------
Confidence 1101111121111000 000 00011223455555555554 2345566889999999988766554311
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.+.+.|++.+
T Consensus 170 ---------------~lllLDEPt~~LD~~~~~~l~~~l~~~~ 197 (254)
T PRK14273 170 ---------------NVILMDEPTSALDPISTGKIEELIINLK 197 (254)
T ss_pred ---------------CEEEEeCCCcccCHHHHHHHHHHHHHHh
Confidence 1244667777778888888888888774
No 184
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=8.3e-09 Score=91.66 Aligned_cols=159 Identities=13% Similarity=0.129 Sum_probs=90.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|+||||+|||||+++|++... .+.+.+++.++... ... ..+.. ...+.++......
T Consensus 22 ~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~~~---~~~~~--~i~~~~q~~~~~~~ 92 (241)
T PRK10895 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLL----PLH---ARARR--GIGYLPQEASIFRR 92 (241)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CHH---HHHHh--CeEEeccCCccccc
Confidence 567789999999999999999999999999765 45566776554321 100 00000 0012222111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+... ..+... ........+...+++.+++..+ ......||+|+++++....++..-.+
T Consensus 93 ~tv~enl~~~-~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~------------- 157 (241)
T PRK10895 93 LSVYDNLMAV-LQIRDD-LSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPK------------- 157 (241)
T ss_pred CcHHHHHhhh-hhcccc-cCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 1111222110 000000 0112234566777888888654 45568899999999887655433111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.+++.+
T Consensus 158 --------llllDEPt~~LD~~~~~~l~~~l~~~~ 184 (241)
T PRK10895 158 --------FILLDEPFAGVDPISVIDIKRIIEHLR 184 (241)
T ss_pred --------EEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 244566667777777887877776653
No 185
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.74 E-value=1.3e-08 Score=91.23 Aligned_cols=160 Identities=12% Similarity=0.120 Sum_probs=90.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~ 90 (299)
++|.+.+++.++|.|+||+|||||+++|++.+. .+.+.+++.++... ....++ . ...+.++.... ..
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~~~~---~---~i~~~~q~~~~~~~ 89 (256)
T TIGR03873 20 VDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGL----SRRARA---R---RVALVEQDSDTAVP 89 (256)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccC----CHHHHh---h---heEEecccCccCCC
Confidence 467788999999999999999999999999765 45566766554321 011111 0 00111211111 11
Q ss_pred hhhhHHHhhcCccchhhcCC-CccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGG-LEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r-~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
....+.+............. .....+++..+++.+++..+ ......||+|++++++...++..-.+
T Consensus 90 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~------------ 157 (256)
T TIGR03873 90 LTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPK------------ 157 (256)
T ss_pred CCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC------------
Confidence 11122221100000000000 11234466777888888654 45567899999999987665544221
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+++....++.+.+.+.+.|++.+
T Consensus 158 ---------llllDEPt~~LD~~~~~~l~~~l~~~~ 184 (256)
T TIGR03873 158 ---------LLLLDEPTNHLDVRAQLETLALVRELA 184 (256)
T ss_pred ---------EEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 234556666667777778888777663
No 186
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.74 E-value=1.1e-08 Score=90.48 Aligned_cols=151 Identities=16% Similarity=0.191 Sum_probs=90.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|+||||+|||||+++|++... .+.+.+++.++.... . .. .+.++......
T Consensus 4 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~-~~----------~~v~q~~~l~~~ 68 (230)
T TIGR01184 4 VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----P-DR----------MVVFQNYSLLPW 68 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC----h-hh----------eEEecCcccCCC
Confidence 467889999999999999999999999999875 355667766553210 0 00 01111111111
Q ss_pred hhhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
....+.+..... ...... ....+++..+++.+++... ......||+|++|+++...++..-.
T Consensus 69 ~tv~e~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p------------ 133 (230)
T TIGR01184 69 LTVRENIALAVD---RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRP------------ 133 (230)
T ss_pred CCHHHHHHHHHH---hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCC------------
Confidence 111122111000 000011 1223456677777888654 4555789999999998765444311
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
..+..+|+....++.+...|.+.|.+.
T Consensus 134 ---------~lllLDEPt~gLD~~~~~~l~~~l~~~ 160 (230)
T TIGR01184 134 ---------KVLLLDEPFGALDALTRGNLQEELMQI 160 (230)
T ss_pred ---------CEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence 124567777788888889998888775
No 187
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=1.2e-08 Score=91.58 Aligned_cols=160 Identities=14% Similarity=0.275 Sum_probs=89.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.|+||+|||||+++|++... .+.+.+++.++..... ....++. ...+.++..
T Consensus 31 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~--~~~~~~~------~i~~v~q~~ 102 (259)
T PRK14274 31 INLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV--DLVELRK------NIGMVFQKG 102 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc--CHHHHhh------ceEEEecCC
Confidence 467788999999999999999999999999764 4567777765532100 0001110 001112111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
........+.+..... ... ........+++..+++.+++ +.+......||+|++|+++...++..-.+
T Consensus 103 ~~~~~tv~enl~~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~----- 175 (259)
T PRK14274 103 NPFPQSIFDNVAYGPR-IHG-TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPD----- 175 (259)
T ss_pred cccccCHHHHHHhHHH-hcC-CCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCC-----
Confidence 1111112222211000 000 00001123345555555554 23456668899999999887654443111
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+...|.+.|++++
T Consensus 176 ----------------llllDEPt~~LD~~~~~~l~~~l~~~~ 202 (259)
T PRK14274 176 ----------------VLLMDEPTSALDPVSTRKIEELILKLK 202 (259)
T ss_pred ----------------EEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 244667777777888888888888764
No 188
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.74 E-value=2.1e-09 Score=94.11 Aligned_cols=133 Identities=15% Similarity=0.137 Sum_probs=79.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccH-HHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESE-ANVRDIFDKVTMENFRYAMGKSSP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~-~~i~~~f~~a~~~~~~~~~~~~~~ 90 (299)
++|.+.+++.++|+||||+||||++++|.+.+.+ +.+.+.+.++......+.. .-+...|+..+. -..-
T Consensus 23 Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rl--------F~~l 94 (250)
T COG0411 23 VSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRL--------FPGL 94 (250)
T ss_pred eeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccc--------cCCC
Confidence 6788999999999999999999999999997764 5677888887654322110 001112222111 0000
Q ss_pred hhhhHHHhhcC--ccchhhc------CCCccHHHHHhhhcccCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVP--NITWEDI------GGLEGVKRELQELVQDVDLNYIAKVT-NGFSGADLTEICQRACKLAI 154 (299)
Q Consensus 91 ~~~~~~l~~l~--~~l~~~~------~r~p~~~~R~~~l~~~v~l~~LA~~t-~glSggDl~~Lv~~A~~~a~ 154 (299)
.....++.... ..+...+ ....+..+|++.+++.+++...+... ..+|+|++++|-...++++-
T Consensus 95 TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 95 TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQ 167 (250)
T ss_pred cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcC
Confidence 00111111100 0011111 11345567788999999998888666 45999998888766655543
No 189
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.73 E-value=8.7e-09 Score=94.85 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=91.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||+|||||+++|++.+.+ +.+.+++.++... ....+. ...+.++......
T Consensus 23 vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~------~i~~v~q~~~~~~~ 91 (303)
T TIGR01288 23 LSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-----ARLARV------AIGVVPQFDNLDPE 91 (303)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-----HHHHhh------cEEEEeccccCCcC
Confidence 5677899999999999999999999999997654 5566666544211 000100 0012221111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+..... ... .......+++..+++.+++... ......||+|++|++....++..-.+
T Consensus 92 ~tv~e~l~~~~~-~~~--~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~------------- 155 (303)
T TIGR01288 92 FTVRENLLVFGR-YFG--MSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ------------- 155 (303)
T ss_pred CcHHHHHHHHHH-HcC--CCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 112222211000 000 0011223456667777888554 45568899999999987665543111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++.+
T Consensus 156 --------lllLDEPt~gLD~~~~~~l~~~l~~~~ 182 (303)
T TIGR01288 156 --------LLILDEPTTGLDPHARHLIWERLRSLL 182 (303)
T ss_pred --------EEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 245667777888888888888888763
No 190
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.73 E-value=5.9e-09 Score=97.46 Aligned_cols=156 Identities=14% Similarity=0.137 Sum_probs=94.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~ 90 (299)
++|.+.+++.++|.||||+|||||+++|++.+.+ +.+.+++.++... ...++. ...+.++..... .
T Consensus 60 is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~-----~~~~~~------~ig~v~q~~~~~~~ 128 (340)
T PRK13536 60 LSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR-----ARLARA------RIGVVPQFDNLDLE 128 (340)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc-----hHHHhc------cEEEEeCCccCCCC
Confidence 5678899999999999999999999999997754 5667777654321 001100 001222111111 1
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+..+.. +.. ....+..++...+++.+++... .++...||+|++|++....++..-.
T Consensus 129 ~tv~e~l~~~~~-~~~--~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P-------------- 191 (340)
T PRK13536 129 FTVRENLLVFGR-YFG--MSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDP-------------- 191 (340)
T ss_pred CcHHHHHHHHHH-HcC--CCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCC--------------
Confidence 111222211100 000 0011234456677777888554 4566889999999998766554311
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+...|.+.|++.+
T Consensus 192 -------~lLiLDEPt~gLD~~~r~~l~~~l~~l~ 219 (340)
T PRK13536 192 -------QLLILDEPTTGLDPHARHLIWERLRSLL 219 (340)
T ss_pred -------CEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 1355677788888899999999988864
No 191
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.4e-08 Score=88.26 Aligned_cols=125 Identities=22% Similarity=0.264 Sum_probs=72.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc----CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~----~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~ 89 (299)
++|.+..++...|.||||+|||||+++|++... .+.+.+++.++....+.+ ++-.-+|- +|+.+..- .
T Consensus 23 vnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~E--RAr~GifL-----afQ~P~ei-~ 94 (251)
T COG0396 23 VNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDE--RARAGIFL-----AFQYPVEI-P 94 (251)
T ss_pred cceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhH--HHhcCCEE-----eecCCccC-C
Confidence 567889999999999999999999999999764 466888999987654322 21111111 11111111 1
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HHHHhc--CCCCHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YIAKVT--NGFSGADLTEIC 146 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~LA~~t--~glSggDl~~Lv 146 (299)
......++............-.++...++...+..++++ ..+.+. +|||||+.++.-
T Consensus 95 GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~E 154 (251)
T COG0396 95 GVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNE 154 (251)
T ss_pred CeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHH
Confidence 112223332211100000000244455666677777773 355444 899999998854
No 192
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.73 E-value=1.3e-08 Score=91.55 Aligned_cols=160 Identities=15% Similarity=0.245 Sum_probs=90.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||+|||||+++|++... .+.+.+++.++.... .....++. ...+.++..
T Consensus 32 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~--~~~~~~~~------~i~~~~q~~ 103 (260)
T PRK10744 32 INLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK--QDIALLRA------KVGMVFQKP 103 (260)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc--cchHHHhc------ceEEEecCC
Confidence 567889999999999999999999999999764 456677765542110 00001110 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
........+.+..... .... .......+++..+++.+++ ..+......||+|++|+++...++..-.+
T Consensus 104 ~~~~~tv~~nl~~~~~-~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~----- 176 (260)
T PRK10744 104 TPFPMSIYDNIAFGVR-LFEK-LSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPE----- 176 (260)
T ss_pred ccCcCcHHHHHhhhHh-hcCC-CCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCC-----
Confidence 1111111122110000 0000 0011223456666666664 23455668899999999987665543111
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++.+
T Consensus 177 ----------------lllLDEPt~~LD~~~~~~l~~~L~~~~ 203 (260)
T PRK10744 177 ----------------VLLLDEPCSALDPISTGRIEELITELK 203 (260)
T ss_pred ----------------EEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 244667777778888888988888764
No 193
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.73 E-value=1.6e-08 Score=91.47 Aligned_cols=160 Identities=14% Similarity=0.287 Sum_probs=90.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.|+||+|||||+++|++... .+.+.+++.++..... ....++. ...+.++..
T Consensus 38 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~--~~~~~~~------~i~~v~q~~ 109 (267)
T PRK14235 38 VDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL--DVVELRA------RVGMVFQKP 109 (267)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc--chHHHhh------ceEEEecCC
Confidence 567789999999999999999999999999764 4667777665432100 0000100 001112111
Q ss_pred CCCchhhhHHHhhcCccchhhcC-CCccHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIG-GLEGVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~-r~p~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
..-.....+.+..... ... .. ...+..+++..+++.+++. .+......||+|++|++....++..-.+
T Consensus 110 ~~~~~tv~enl~~~~~-~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~---- 183 (267)
T PRK14235 110 NPFPKSIYENVAYGPR-IHG-LARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPE---- 183 (267)
T ss_pred CCCCCcHHHHHHHHHH-hcc-cccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCC----
Confidence 1111112222210000 000 00 0112234556667766663 2345568899999999987665543221
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|++..
T Consensus 184 -----------------lllLDEPt~~LD~~~~~~l~~~L~~l~ 210 (267)
T PRK14235 184 -----------------VILMDEPCSALDPIATAKVEELIDELR 210 (267)
T ss_pred -----------------EEEEeCCCcCCCHHHHHHHHHHHHHHh
Confidence 244667777778888888888887764
No 194
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.73 E-value=1e-08 Score=88.34 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=88.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++... ...+. +...+.++......
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~---------~~~~~--~~i~~~~q~~~~~~~ 87 (198)
T TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQ---------RDEPH--RNILYLGHLPGLKPE 87 (198)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccc---------hHHhh--hheEEeccCcccccC
Confidence 5777899999999999999999999999997654 4556665544221 00010 01111121111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+... .. .. ....+++..+++.+++... ......||+|+.+++....++..-.+
T Consensus 88 ~tv~~~l~~~----~~-~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~------------- 147 (198)
T TIGR01189 88 LSALENLHFW----AA-IH--GGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAP------------- 147 (198)
T ss_pred CcHHHHHHHH----HH-Hc--CCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCC-------------
Confidence 1111221110 00 01 1113455667777788554 45568899999999886654443211
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.++|.+.
T Consensus 148 --------llllDEPt~~LD~~~~~~l~~~l~~~ 173 (198)
T TIGR01189 148 --------LWILDEPTTALDKAGVALLAGLLRAH 173 (198)
T ss_pred --------EEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 24466677777777888888888765
No 195
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.73 E-value=7.8e-09 Score=90.53 Aligned_cols=156 Identities=14% Similarity=0.135 Sum_probs=87.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++... ..... ... ...+.++......
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~---~~~--~i~~~~q~~~~~~~ 89 (222)
T cd03224 19 VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGL----PPHER---ARA--GIGYVPEGRRIFPE 89 (222)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCC----CHHHH---Hhc--CeEEeccccccCCC
Confidence 467789999999999999999999999999775 35566776554321 00000 000 0011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccC-CHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDV-DLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v-~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
....+.+..... .........+...+++.+ .+.. +......||+|+.|+++...++..-.
T Consensus 90 ~t~~~~l~~~~~-----~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p------------- 151 (222)
T cd03224 90 LTVEENLLLGAY-----ARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRP------------- 151 (222)
T ss_pred CcHHHHHHHHhh-----hcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCC-------------
Confidence 111122211000 000112233444455555 3433 44556789999999988765543211
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.|.+.|++..
T Consensus 152 --------~llllDEPt~~LD~~~~~~l~~~l~~~~ 179 (222)
T cd03224 152 --------KLLLLDEPSEGLAPKIVEEIFEAIRELR 179 (222)
T ss_pred --------CEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence 1244667777788888999999988764
No 196
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.73 E-value=9.1e-09 Score=92.41 Aligned_cols=160 Identities=14% Similarity=0.292 Sum_probs=89.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++..... .....+. ...+..+..
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~--~~~~~~~------~i~~~~q~~ 94 (258)
T PRK14241 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV--DPVAVRR------TIGMVFQRP 94 (258)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc--ChHHHhc------ceEEEcccc
Confidence 567889999999999999999999999999764 5667777665421100 0000100 001111111
Q ss_pred CCCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 87 ~~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
.... ....+.+... ..... ........+++..+++.+++ ..+......||+|++++++...++..-.+
T Consensus 95 ~~~~~~tv~~nl~~~-~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~---- 168 (258)
T PRK14241 95 NPFPTMSIRDNVVAG-LKLNG-VRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPD---- 168 (258)
T ss_pred ccCCCCcHHHHHHHH-HHhcC-CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCC----
Confidence 1111 1111211100 00000 00011223455566666665 23445568899999999987765543221
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|++++
T Consensus 169 -----------------llllDEPt~~LD~~~~~~l~~~l~~~~ 195 (258)
T PRK14241 169 -----------------VLLMDEPCSALDPISTLAIEDLINELK 195 (258)
T ss_pred -----------------EEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 244666777777888888888888764
No 197
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=4.4e-09 Score=95.12 Aligned_cols=156 Identities=12% Similarity=0.115 Sum_probs=87.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~ 89 (299)
+++.+.+++.++|.||||+|||||+++|++... .+.+.+++.++... ....++. ...+.++... ..
T Consensus 28 isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~----~~~~~~~------~i~~v~q~~~~~~~ 97 (269)
T PRK13648 28 VSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDD----NFEKLRK------HIGIVFQNPDNQFV 97 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC----CHHHHHh------heeEEEeChHHhcc
Confidence 567789999999999999999999999999765 45667776654321 1011110 0011111100 00
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.....+.+.. . ............+++..+++.+++.. +......||+|+.+++....++..-.+
T Consensus 98 ~~~v~~~~~~-~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~------------ 162 (269)
T PRK13648 98 GSIVKYDVAF-G--LENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPS------------ 162 (269)
T ss_pred cccHHHHHHh-h--HHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence 0011111100 0 00000001122345667777777744 456668899999999887655443211
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|.+.
T Consensus 163 ---------lllLDEPt~~LD~~~~~~l~~~L~~~ 188 (269)
T PRK13648 163 ---------VIILDEATSMLDPDARQNLLDLVRKV 188 (269)
T ss_pred ---------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 24455666666777777777777654
No 198
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.72 E-value=1.6e-08 Score=91.25 Aligned_cols=159 Identities=10% Similarity=0.099 Sum_probs=89.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~ 90 (299)
++|.+.+++.++|+||||+|||||+++|++.... +.+.+++.++... ....++. ...+.++..... .
T Consensus 26 isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~~~~~------~i~~v~q~~~~~~~ 95 (265)
T PRK10253 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHY----ASKEVAR------RIGLLAQNATTPGD 95 (265)
T ss_pred cceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhC----CHHHHhh------heEEeeccCcCCCC
Confidence 5677889999999999999999999999998753 5566666544321 0011110 001112111111 1
Q ss_pred hhhhHHHhhcCccchhhcCCCc-cHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGLE-GVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p-~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
....+.+..........+...+ ...+++..+++.+++.. +.+....||+|++++++...++..-.+
T Consensus 96 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~------------ 163 (265)
T PRK10253 96 ITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETA------------ 163 (265)
T ss_pred CcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCC------------
Confidence 1111222110000000000011 22345667778888854 456668899999999987665544221
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+++....++.+.+.+.+.|.+.
T Consensus 164 ---------llllDEPt~gLD~~~~~~l~~~L~~l 189 (265)
T PRK10253 164 ---------IMLLDEPTTWLDISHQIDLLELLSEL 189 (265)
T ss_pred ---------EEEEeCccccCCHHHHHHHHHHHHHH
Confidence 23455666666777777787777765
No 199
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=1.5e-08 Score=90.13 Aligned_cols=164 Identities=12% Similarity=0.173 Sum_probs=90.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||||||||+++|++...+ +.+.+++.++.... .........+.. ...+.++......
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~~~~~~---~i~~~~q~~~~~~~ 96 (242)
T PRK11124 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSK-TPSDKAIRELRR---NVGMVFQQYNLWPH 96 (242)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc-ccchhhHHHHHh---heEEEecCccccCC
Confidence 4577889999999999999999999999997653 55666665441000 000000111110 0011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+......... ........++..+++.+++.. +......||+|+.|++....++..-.+
T Consensus 97 ~tv~e~i~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~------------- 161 (242)
T PRK11124 97 LTVQQNLIEAPCRVLG--LSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ------------- 161 (242)
T ss_pred CcHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 1112222110000000 001123445667777788854 455668999999999886654443111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.+.+.|++.+
T Consensus 162 --------llilDEPt~~LD~~~~~~l~~~l~~~~ 188 (242)
T PRK11124 162 --------VLLFDEPTAALDPEITAQIVSIIRELA 188 (242)
T ss_pred --------EEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence 244666777777778888888887653
No 200
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.72 E-value=1.6e-08 Score=89.75 Aligned_cols=162 Identities=11% Similarity=0.190 Sum_probs=91.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||||||||+++|++.+. .+.+.+++.++.... ......+.. ...+.++......
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~----~~~~~~~~~---~i~~~~q~~~~~~~ 92 (241)
T cd03256 20 VSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLK----GKALRQLRR---QIGMIFQQFNLIER 92 (241)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccC----HhHHHHHHh---ccEEEcccCccccc
Confidence 567889999999999999999999999999765 455667765543210 000000000 0011221111111
Q ss_pred hhhhHHHhhcCccc---hhhcCC--CccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNIT---WEDIGG--LEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRR 164 (299)
Q Consensus 91 ~~~~~~l~~l~~~l---~~~~~r--~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~ 164 (299)
....+.+....... ...+.. .....+++..+++.+++..+ ......||+|++|+++...++..-.+
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~-------- 164 (241)
T cd03256 93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPK-------- 164 (241)
T ss_pred CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCC--------
Confidence 11122221100000 000000 12234566677888888654 45567899999999987655443111
Q ss_pred HHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.|.+.|++.
T Consensus 165 -------------llllDEPt~~LD~~~~~~l~~~l~~~ 190 (241)
T cd03256 165 -------------LILADEPVASLDPASSRQVMDLLKRI 190 (241)
T ss_pred -------------EEEEeCccccCCHHHHHHHHHHHHHH
Confidence 24466777777788888888888765
No 201
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=8.3e-09 Score=93.90 Aligned_cols=157 Identities=11% Similarity=0.113 Sum_probs=90.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~ 89 (299)
++|.+.+++.++|+|+||+|||||+++|++.+.+ +.+.+++.++.... ....++. ...+.++... ..
T Consensus 29 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~---~~~~~~~------~i~~v~q~~~~~~~ 99 (280)
T PRK13633 29 VNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEE---NLWDIRN------KAGMVFQNPDNQIV 99 (280)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc---cHHHHhh------heEEEecChhhhhc
Confidence 4567899999999999999999999999998664 56677765543210 0000110 0011111100 00
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.....+.+..... ..-.......+++..+++.+++.. +......||+|++|++....++..-.+
T Consensus 100 ~~~v~~~l~~~~~---~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~------------ 164 (280)
T PRK13633 100 ATIVEEDVAFGPE---NLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPE------------ 164 (280)
T ss_pred cccHHHHHHhhHh---hcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence 0011111110000 000011223456677888888855 456668999999999887665543221
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.|.+.|++.
T Consensus 165 ---------llllDEPt~gLD~~~~~~l~~~l~~l 190 (280)
T PRK13633 165 ---------CIIFDEPTAMLDPSGRREVVNTIKEL 190 (280)
T ss_pred ---------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 24456677777778888888877765
No 202
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.72 E-value=2.1e-09 Score=91.52 Aligned_cols=161 Identities=14% Similarity=0.174 Sum_probs=100.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHH-HHhhhhcCC-C
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTME-NFRYAMGKS-S 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-~~~~~~~~~-~ 89 (299)
++|.+.+++.|.|.||||+||||...++.+... .+-+.+++.++....+ +.+|+.- ...++..+. .
T Consensus 23 Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm----------~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 23 VSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPM----------HKRARLGIGYLPQEASIFR 92 (243)
T ss_pred eeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCCh----------HHHhhcCcccccccchHhh
Confidence 678899999999999999999999999999765 4667889888876432 2222221 111110000 0
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVT-NGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t-~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.-+..+.+..+....... ......+.|++.+++++.+..+.... ..+|||+.+++-.+.++.+-.+
T Consensus 93 ~LtV~dNi~~vlE~~~~d-~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~------------ 159 (243)
T COG1137 93 KLTVEDNIMAVLEIREKD-LKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPK------------ 159 (243)
T ss_pred cCcHHHHHHHHHhhhhcc-hhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCC------------
Confidence 000111111110100000 00113344566899999999888665 6799999999776554443111
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhccCC
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRS 206 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~Ps 206 (299)
-+..+++....+|+.-.|+.+-++..+.+
T Consensus 160 ---------fiLLDEPFAGVDPiaV~dIq~iI~~L~~r 188 (243)
T COG1137 160 ---------FILLDEPFAGVDPIAVIDIQRIIKHLKDR 188 (243)
T ss_pred ---------EEEecCCccCCCchhHHHHHHHHHHHHhC
Confidence 24466777788999999999999888754
No 203
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.72 E-value=3.8e-08 Score=98.06 Aligned_cols=152 Identities=13% Similarity=0.147 Sum_probs=91.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
.++.+++++.++|.|++|+|||||++.|++...+ +.+.+++.++... ....++..+ .+.++....-..
T Consensus 351 inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~----~~~~~~~~i------~~v~Q~~~lf~~ 420 (571)
T TIGR02203 351 ISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADY----TLASLRRQV------ALVSQDVVLFND 420 (571)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhc----CHHHHHhhc------eEEccCcccccc
Confidence 5667899999999999999999999999998764 6677887665432 111222211 122222211122
Q ss_pred hhhHHHhhcCccchhhcCCC-ccHHHHHhhhcccCCHHH-HHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGL-EGVKRELQELVQDVDLNY-IAKV-----------TNGFSGADLTEICQRACKLAIRQSI 158 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~-p~~~~R~~~l~~~v~l~~-LA~~-----------t~glSggDl~~Lv~~A~~~a~~r~~ 158 (299)
+.++.+.-. +. .-.++++..+++.+++++ +.+. ...+||||+|+++...++..-..
T Consensus 421 Ti~~Ni~~~---------~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~-- 489 (571)
T TIGR02203 421 TIANNIAYG---------RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAP-- 489 (571)
T ss_pred cHHHHHhcC---------CCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC--
Confidence 222222210 00 112345555566666633 2222 24599999999987654443111
Q ss_pred HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
.+..+|+....+..+.+.+.+.|.+..+
T Consensus 490 -------------------illLDEpts~LD~~~~~~i~~~L~~~~~ 517 (571)
T TIGR02203 490 -------------------ILILDEATSALDNESERLVQAALERLMQ 517 (571)
T ss_pred -------------------EEEEeCccccCCHHHHHHHHHHHHHHhC
Confidence 2446778888888899999999888744
No 204
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.72 E-value=2.3e-08 Score=88.04 Aligned_cols=44 Identities=27% Similarity=0.543 Sum_probs=36.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l 57 (299)
++|.+.+++.++|.||||||||||+++|++.+.+ +.+.+++.++
T Consensus 22 isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 67 (229)
T cd03254 22 INFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDI 67 (229)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeH
Confidence 4567889999999999999999999999998753 5666666544
No 205
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.72 E-value=1.1e-08 Score=100.25 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=85.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|+||||||||||+|+|++.+.+ +.+.+++.++... .....+..+ .+.++.... .
T Consensus 22 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~----~~~~~~~~i------~~~~q~~~~--~ 89 (490)
T PRK10938 22 PSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRL----SFEQLQKLV------SDEWQRNNT--D 89 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccC----CHHHHHHHh------ceeccCcch--h
Confidence 5678899999999999999999999999998754 4444544433211 001111000 111110000 0
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA 170 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~ 170 (299)
................+.......+|+..+++.+++..+ ......||||++|++....++..-.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~-------------- 155 (490)
T PRK10938 90 MLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPD-------------- 155 (490)
T ss_pred hcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCC--------------
Confidence 000000000000000000011235677788888898654 45568999999999988766554221
Q ss_pred CCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|++.
T Consensus 156 -------lllLDEPt~~LD~~~~~~l~~~l~~~ 181 (490)
T PRK10938 156 -------LLILDEPFDGLDVASRQQLAELLASL 181 (490)
T ss_pred -------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 23355555666666666666666654
No 206
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=7.8e-09 Score=93.81 Aligned_cols=158 Identities=9% Similarity=0.077 Sum_probs=91.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~ 89 (299)
++|.+.+|+.++|.||||+|||||+++|++.+.+ +.+.+++.++.... ....++. ...+.++... ..
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---~~~~~~~------~i~~v~q~~~~~~~ 91 (274)
T PRK13644 21 INLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFS---KLQGIRK------LVGIVFQNPETQFV 91 (274)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccc---cHHHHHh------heEEEEEChhhhcc
Confidence 5677899999999999999999999999997654 55666665442210 0011110 0011111100 00
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.....+.+. +.. ...........+++..+++.+++... ......||+|+.|++....++..-.+
T Consensus 92 ~~tv~enl~-~~~--~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~------------ 156 (274)
T PRK13644 92 GRTVEEDLA-FGP--ENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPE------------ 156 (274)
T ss_pred cchHHHHHH-hhH--HHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence 011112111 000 00000112234556677788888654 45568899999999987665544222
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+...|.+.|++.+
T Consensus 157 ---------lllLDEPt~gLD~~~~~~l~~~l~~l~ 183 (274)
T PRK13644 157 ---------CLIFDEVTSMLDPDSGIAVLERIKKLH 183 (274)
T ss_pred ---------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 244666777777888888888887764
No 207
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.71 E-value=4e-08 Score=98.19 Aligned_cols=151 Identities=14% Similarity=0.148 Sum_probs=88.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
.++.+++++.++|+|++|||||||++.|++...+ +.+.+++.++... ....++..+ .+.++....-..
T Consensus 362 i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~----~~~~~~~~i------~~v~Q~~~lf~~ 431 (582)
T PRK11176 362 INFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDY----TLASLRNQV------ALVSQNVHLFND 431 (582)
T ss_pred ceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhc----CHHHHHhhc------eEEccCceeecc
Confidence 5667899999999999999999999999998764 6677787666432 111111111 111111111112
Q ss_pred hhhHHHhhcCccchhhcCCCc-cHHHHHhhhcccCCHHH-HH-----------HhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLE-GVKRELQELVQDVDLNY-IA-----------KVTNGFSGADLTEICQRACKLAIRQSI 158 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p-~~~~R~~~l~~~v~l~~-LA-----------~~t~glSggDl~~Lv~~A~~~a~~r~~ 158 (299)
+.++.+.- .+.+ -.++++...++.+++++ +. ..-..+||||.|+++...++..-.+
T Consensus 432 Ti~~Ni~~---------~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~-- 500 (582)
T PRK11176 432 TIANNIAY---------ARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSP-- 500 (582)
T ss_pred hHHHHHhc---------CCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCC--
Confidence 22222211 0001 12334444444444422 22 2234589999999987654433111
Q ss_pred HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.|...+.++|.+..
T Consensus 501 -------------------ililDEptsaLD~~t~~~i~~~l~~~~ 527 (582)
T PRK11176 501 -------------------ILILDEATSALDTESERAIQAALDELQ 527 (582)
T ss_pred -------------------EEEEECccccCCHHHHHHHHHHHHHHh
Confidence 244677888888899999999998874
No 208
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.71 E-value=1.5e-08 Score=90.54 Aligned_cols=160 Identities=13% Similarity=0.279 Sum_probs=89.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++.... . ....++. ...+.++..
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~-~-~~~~~~~------~i~~~~q~~ 93 (250)
T PRK14240 22 INLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD-I-DVNQLRK------RVGMVFQQP 93 (250)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc-c-chHHHhc------cEEEEecCC
Confidence 567788999999999999999999999999643 466777776553210 0 0001110 001122111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
........+.+..... ... ........+++..+++.+++ ..+......||+|++|+++...++..-.+
T Consensus 94 ~~~~~t~~~ni~~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~----- 166 (250)
T PRK14240 94 NPFPMSIYDNVAYGPR-THG-IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPE----- 166 (250)
T ss_pred ccCcccHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCC-----
Confidence 1111111122211000 000 00001223445555555543 23455668899999999887665543211
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.++|++.+
T Consensus 167 ----------------llllDEP~~~LD~~~~~~l~~~l~~~~ 193 (250)
T PRK14240 167 ----------------VLLMDEPTSALDPISTLKIEELIQELK 193 (250)
T ss_pred ----------------EEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 244667777778888888988888774
No 209
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.71 E-value=9.9e-09 Score=92.74 Aligned_cols=157 Identities=13% Similarity=0.103 Sum_probs=89.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~ 89 (299)
++|.+.+++.++|+||||||||||+++|++.+.+ +.+.+++.++... .....+. ...+.++... ..
T Consensus 32 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~~------~i~~v~q~~~~~~~ 101 (267)
T PRK15112 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFG----DYSYRSQ------RIRMIFQDPSTSLN 101 (267)
T ss_pred eeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC----chhhHhc------cEEEEecCchhhcC
Confidence 5678899999999999999999999999998754 5566766554211 0000000 0011111110 00
Q ss_pred ch-hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PS-ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRER 166 (299)
Q Consensus 90 ~~-~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~ 166 (299)
.. ...+.+.. ....... .......+++..+++.+++ .... .....||+|++++++...++..-.
T Consensus 102 ~~~tv~~~l~~-~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p----------- 168 (267)
T PRK15112 102 PRQRISQILDF-PLRLNTD-LEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRP----------- 168 (267)
T ss_pred cchhHHHHHHH-HHHhccC-CCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCC-----------
Confidence 00 11111110 0000000 0012234566677888888 4443 455789999999988765544311
Q ss_pred HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.-+..+|+....++.+.+.|.+.|.+.
T Consensus 169 ----------~lllLDEPt~~LD~~~~~~l~~~l~~~ 195 (267)
T PRK15112 169 ----------KVIIADEALASLDMSMRSQLINLMLEL 195 (267)
T ss_pred ----------CEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 124466777777788888888888775
No 210
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.71 E-value=9.7e-09 Score=96.49 Aligned_cols=156 Identities=12% Similarity=0.153 Sum_probs=90.1
Q ss_pred hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773 13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP 90 (299)
Q Consensus 13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~ 90 (299)
-++|.+.+++.++|.||||||||||+++|++...+ +.+.+++.++....... ..... . +...+.++....-+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~---~~~~~-~--~~i~~v~q~~~l~~ 89 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGI---CLPPE-K--RRIGYVFQDARLFP 89 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccc---ccchh-h--CCEEEEcCCcccCC
Confidence 36788899999999999999999999999998754 55666665543210000 00000 0 00011111111100
Q ss_pred -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
....+.+.. . . .....+++..+++.+++.. +.+....||||+.|+++...++..-.+
T Consensus 90 ~~tv~enl~~-~--~------~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~------------ 148 (352)
T PRK11144 90 HYKVRGNLRY-G--M------AKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPE------------ 148 (352)
T ss_pred CCcHHHHHHh-h--h------hhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence 111111110 0 0 0122456667788888854 456668999999999987665543211
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|+++.
T Consensus 149 ---------llLLDEPts~LD~~~~~~l~~~L~~l~ 175 (352)
T PRK11144 149 ---------LLLMDEPLASLDLPRKRELLPYLERLA 175 (352)
T ss_pred ---------EEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 244566667777777788877777653
No 211
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=1.1e-08 Score=90.53 Aligned_cols=154 Identities=11% Similarity=0.169 Sum_probs=90.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~ 90 (299)
+++.+.+++.++|.|+||+|||||+++|++.+.+ +.+++++.++..... ....+ .+.++..... .
T Consensus 18 is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i----------~~~~q~~~~~~~ 85 (235)
T cd03299 18 VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDI----------SYVPQNYALFPH 85 (235)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCE----------EEEeecCccCCC
Confidence 4677889999999999999999999999997664 556677665532100 00000 1111111111 0
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.. ... .. ........+++..+++.+++.. +......||+|+.++++...++..-.+
T Consensus 86 ~t~~e~l~~-~~~-~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~------------- 149 (235)
T cd03299 86 MTVYKNIAY-GLK-KR-KVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK------------- 149 (235)
T ss_pred ccHHHHHHH-HHH-Hc-CCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCC-------------
Confidence 111111110 000 00 0011233445567777788855 455667899999999987765554222
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+++....++.+.+.|.+.|++.
T Consensus 150 --------llllDEPt~gLD~~~~~~l~~~l~~~ 175 (235)
T cd03299 150 --------ILLLDEPFSALDVRTKEKLREELKKI 175 (235)
T ss_pred --------EEEECCCcccCCHHHHHHHHHHHHHH
Confidence 24466677777788888888888775
No 212
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=1.9e-08 Score=89.94 Aligned_cols=160 Identities=12% Similarity=0.231 Sum_probs=89.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.|+||+|||||+++|++... .+.+.+++.++..... ....++ ....+.++..
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~--~~~~~~------~~i~~~~q~~ 94 (251)
T PRK14270 23 INLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV--DVVELR------KRVGMVFQKP 94 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc--cHHHHH------hheEEEecCC
Confidence 467788999999999999999999999999753 3667777765532100 000010 0011222211
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH----H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL----N-YIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l----~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
........+.+..... ... ........+++..+++.+++ . .+......||+|++++++...++..-.
T Consensus 95 ~~~~~tv~enl~~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p------ 166 (251)
T PRK14270 95 NPFPMSIYDNVAYGPR-IHG-IKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKP------ 166 (251)
T ss_pred CcCCCcHHHHHHhHHH-hcC-CCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCC------
Confidence 1111111122210000 000 00011223445555666554 2 244566889999999998766554311
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+...|.+.|++..
T Consensus 167 ---------------~llllDEP~~~LD~~~~~~l~~~L~~~~ 194 (251)
T PRK14270 167 ---------------DVILMDEPTSALDPISTLKIEDLMVELK 194 (251)
T ss_pred ---------------CEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1244667777777888888888887763
No 213
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=1.3e-08 Score=92.48 Aligned_cols=161 Identities=9% Similarity=0.116 Sum_probs=89.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~ 89 (299)
++|.+.+++.++|.||||||||||+++|++...+ +.+.+++.++...........++. ...+.++.. ...
T Consensus 26 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~------~i~~~~q~~~~~~~ 99 (280)
T PRK13649 26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRK------KVGLVFQFPESQLF 99 (280)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHh------heEEEeeChhhhhc
Confidence 5677899999999999999999999999997654 556666655432100000011110 001111110 000
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
.....+.+..... ... .......+++..+++.+++. . +......||+|++|+++...++..-.+
T Consensus 100 ~~tv~e~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~----------- 165 (280)
T PRK13649 100 EETVLKDVAFGPQ-NFG--VSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPK----------- 165 (280)
T ss_pred cccHHHHHHHHHH-HcC--CCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC-----------
Confidence 0111222210000 000 00112334556667777774 3 456668899999999886654443111
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++.+
T Consensus 166 ----------lllLDEPt~~LD~~~~~~l~~~l~~~~ 192 (280)
T PRK13649 166 ----------ILVLDEPTAGLDPKGRKELMTLFKKLH 192 (280)
T ss_pred ----------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 244667777777888888888887763
No 214
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.70 E-value=1.2e-08 Score=86.98 Aligned_cols=154 Identities=16% Similarity=0.228 Sum_probs=92.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+..|+.+.|.||||+||||++|+||..+.+ +.+++++.+....... ..+.+.-+|.. ..-...-
T Consensus 21 VSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~-vrr~IGVl~~e---------~glY~Rl 90 (245)
T COG4555 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSF-VRRKIGVLFGE---------RGLYARL 90 (245)
T ss_pred eeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHH-HhhhcceecCC---------cChhhhh
Confidence 5788899999999999999999999999998764 6678887776543111 11111111110 0000001
Q ss_pred hhhHHHh---hcCccchhhcCCCccHHHHHhhhcccCCH-HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIV---EVPNITWEDIGGLEGVKRELQELVQDVDL-NYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 92 ~~~~~l~---~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
+.++.+. ++.. ....+.+.|.+.+.+.+++ +.+.++..+||-|..|++..+.++.--
T Consensus 91 T~rEnl~~Fa~L~~------l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~------------- 151 (245)
T COG4555 91 TARENLKYFARLNG------LSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD------------- 151 (245)
T ss_pred hHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC-------------
Confidence 1111111 1111 1124568889999999999 456678899999999998765433211
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
| ..+..+++....+..+...|.+-+.+.+
T Consensus 152 -----P---~i~vlDEP~sGLDi~~~r~~~dfi~q~k 180 (245)
T COG4555 152 -----P---SILVLDEPTSGLDIRTRRKFHDFIKQLK 180 (245)
T ss_pred -----C---CeEEEcCCCCCccHHHHHHHHHHHHHhh
Confidence 1 1133455555556666655555555554
No 215
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.70 E-value=2.8e-08 Score=101.18 Aligned_cols=150 Identities=17% Similarity=0.203 Sum_probs=89.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+++|+.++|+|++|||||||++.|++...+ +.+.+++.++... ....++..+ .+.++....-..
T Consensus 472 isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~----~~~~lr~~i------~~v~Q~~~lf~g 541 (686)
T TIGR03797 472 VSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGL----DVQAVRRQL------GVVLQNGRLMSG 541 (686)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcC----CHHHHHhcc------EEEccCCccCcc
Confidence 4677899999999999999999999999997754 6788888777543 111222211 112211111112
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HH-----------HhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IA-----------KVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA-----------~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.- .+ |-.++++..+++..++++ +. ..-..+||||.|+++...++..-.
T Consensus 542 TI~eNi~~---------~~-~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p---- 607 (686)
T TIGR03797 542 SIFENIAG---------GA-PLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP---- 607 (686)
T ss_pred cHHHHHhc---------CC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC----
Confidence 22222211 11 112333444444444432 22 233569999999998765443211
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.-+..+|+....++-+.+.+.++|++..
T Consensus 608 -----------------~iLiLDEpTS~LD~~te~~i~~~L~~~~ 635 (686)
T TIGR03797 608 -----------------RILLFDEATSALDNRTQAIVSESLERLK 635 (686)
T ss_pred -----------------CEEEEeCCccCCCHHHHHHHHHHHHHhC
Confidence 1244677788888888899999888763
No 216
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=1.1e-08 Score=90.47 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=90.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~ 90 (299)
.++.+.+++.++|+|+||+|||||+++|++...+ +.+.+++.++..... ....+ .+.++....- .
T Consensus 19 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i----------~~~~q~~~~~~~ 86 (232)
T cd03300 19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPV----------NTVFQNYALFPH 86 (232)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcce----------EEEecccccCCC
Confidence 4567889999999999999999999999998754 556677655432110 00001 1111111110 0
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+..... ... .+.....+++..+++.+++.. +......+|+|++++++...++..-.+
T Consensus 87 ~t~~~nl~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~------------- 150 (232)
T cd03300 87 LTVFENIAFGLR-LKK--LPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK------------- 150 (232)
T ss_pred CcHHHHHHHHHH-hcC--CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 011111110000 000 001123445566777777744 556668999999999887665543221
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+++....++.+.+.|.+.|+++.
T Consensus 151 --------llllDEP~~gLD~~~~~~l~~~l~~~~ 177 (232)
T cd03300 151 --------VLLLDEPLGALDLKLRKDMQLELKRLQ 177 (232)
T ss_pred --------EEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 244667777778888899998888764
No 217
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=5.9e-09 Score=94.71 Aligned_cols=156 Identities=12% Similarity=0.113 Sum_probs=89.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~ 89 (299)
++|.+.+|+.++|.|+||+|||||+++|++... .+.+.+++.++... ....++ . ...+.++... ..
T Consensus 26 v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~----~~~~~~---~---~i~~v~q~~~~~~~ 95 (277)
T PRK13642 26 VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE----NVWNLR---R---KIGMVFQNPDNQFV 95 (277)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcC----CHHHHh---c---ceEEEEECHHHhhc
Confidence 567789999999999999999999999999775 45566776554321 111111 0 0011111100 00
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.....+.+... ....-.......+++..+++.+++..+ ...+..||+|+.+++....++..-.+
T Consensus 96 ~~tv~eni~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~------------ 160 (277)
T PRK13642 96 GATVEDDVAFG---MENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPE------------ 160 (277)
T ss_pred cCCHHHHHHhh---HHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence 11111222100 000000011223456677777888544 45568899999999887665543222
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.|.+.|.+.
T Consensus 161 ---------llllDEPt~~LD~~~~~~l~~~l~~l 186 (277)
T PRK13642 161 ---------IIILDESTSMLDPTGRQEIMRVIHEI 186 (277)
T ss_pred ---------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 23456666777778888888887665
No 218
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.69 E-value=2.7e-08 Score=89.50 Aligned_cols=164 Identities=10% Similarity=0.100 Sum_probs=92.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-----CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS 88 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-----~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~ 88 (299)
++|.+.+++.++|+||||||||||+++|++...+ +.+.+++.++.... ........+. ....+.++....
T Consensus 23 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~--~~~~~~~~~~---~~i~~~~q~~~~ 97 (262)
T PRK09984 23 VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG--RLARDIRKSR---ANTGYIFQQFNL 97 (262)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccc--ccchhHHHHH---hheEEEcccccc
Confidence 5677889999999999999999999999998753 56777776553210 0000011110 000112211111
Q ss_pred Cc-hhhhHHHhhcCccchhh----cCC-CccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 89 SP-SALRETIVEVPNITWED----IGG-LEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 89 ~~-~~~~~~l~~l~~~l~~~----~~r-~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
.. ....+.+........+. ... .+...+++..+++.+++.. +.+....||+|+.|++....++..-.+
T Consensus 98 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~----- 172 (262)
T PRK09984 98 VNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAK----- 172 (262)
T ss_pred ccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCC-----
Confidence 11 11122221100000000 000 1233456777888888854 456668899999999887655543111
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++-+.+.|.+.|++.
T Consensus 173 ----------------llllDEPt~~LD~~~~~~l~~~l~~~ 198 (262)
T PRK09984 173 ----------------VILADEPIASLDPESARIVMDTLRDI 198 (262)
T ss_pred ----------------EEEecCccccCCHHHHHHHHHHHHHH
Confidence 24466677777777888888888766
No 219
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=5e-09 Score=94.84 Aligned_cols=159 Identities=12% Similarity=0.071 Sum_probs=89.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~ 89 (299)
++|.+.+++.++|.||||||||||+++|++.+.+ +.+.+++.++... ......++. ...+.++... ..
T Consensus 20 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~--~~~~~~~~~------~i~~v~q~~~~~~~ 91 (271)
T PRK13638 20 LNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYS--KRGLLALRQ------QVATVFQDPEQQIF 91 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccc--cCCHHHHHh------heEEEeeChhhccc
Confidence 5677899999999999999999999999997754 5566776655210 000001110 0011111100 00
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.....+.+.. . ....-.......+++..+++.+++..+. .....||+|+.|++....++..-.+
T Consensus 92 ~~~~~~~l~~-~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~------------ 156 (271)
T PRK13638 92 YTDIDSDIAF-S--LRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQAR------------ 156 (271)
T ss_pred cccHHHHHHH-H--HHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCC------------
Confidence 0001111110 0 0000001112234556677777875544 4457899999999987665543221
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+...|.+.|++.+
T Consensus 157 ---------lllLDEPt~~LD~~~~~~l~~~l~~~~ 183 (271)
T PRK13638 157 ---------YLLLDEPTAGLDPAGRTQMIAIIRRIV 183 (271)
T ss_pred ---------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 244667777778888888888888764
No 220
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.69 E-value=2.7e-08 Score=87.05 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=85.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++... ....++ +...+.++.......
T Consensus 23 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~~~~~~------~~i~~~~q~~~l~~~ 92 (221)
T cd03244 23 ISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKI----GLHDLR------SRISIIPQDPVLFSG 92 (221)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhC----CHHHHh------hhEEEECCCCccccc
Confidence 5677899999999999999999999999997653 5566666544321 000110 000111111111111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH------------HhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA------------KVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA------------~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
...+.+.. . ... ..++....++.+++.... .....||+|++++++...++..-.
T Consensus 93 tv~enl~~----~----~~~--~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p---- 158 (221)
T cd03244 93 TIRSNLDP----F----GEY--SDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS---- 158 (221)
T ss_pred hHHHHhCc----C----CCC--CHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC----
Confidence 11111110 0 001 123334444445553322 356789999999988766554311
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.|.+.|++.+
T Consensus 159 -----------------~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (221)
T cd03244 159 -----------------KILVLDEATASVDPETDALIQKTIREAF 186 (221)
T ss_pred -----------------CEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 1244667777778888889999988764
No 221
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.69 E-value=1.9e-08 Score=88.52 Aligned_cols=157 Identities=16% Similarity=0.224 Sum_probs=86.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-----CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS 88 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-----~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~ 88 (299)
++|.+.+++.++|+||||||||||+++|++.+. .+.+.+++.++.. . . +. +...+.++....
T Consensus 26 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~-------~---~-~~--~~i~~~~q~~~~ 92 (226)
T cd03234 26 VSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP-------D---Q-FQ--KCVAYVRQDDIL 92 (226)
T ss_pred ceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh-------H---H-hc--ccEEEeCCCCcc
Confidence 467789999999999999999999999999765 3456666544310 0 0 00 000111111111
Q ss_pred Cc-hhhhHHHhhcCccchhhcCCCccHHHHHhh-hcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 89 SP-SALRETIVEVPNITWEDIGGLEGVKRELQE-LVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRE 165 (299)
Q Consensus 89 ~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~-l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~ 165 (299)
.. ....+.+...................+... +++.+++..+. .....||+|+.++++...++..-.+
T Consensus 93 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~--------- 163 (226)
T cd03234 93 LPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPK--------- 163 (226)
T ss_pred CcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCC---------
Confidence 11 111122210000000000000111223334 67777775554 4557899999999987665544222
Q ss_pred HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+...|.+.+.+.+
T Consensus 164 ------------illlDEP~~gLD~~~~~~~~~~l~~~~ 190 (226)
T cd03234 164 ------------VLILDEPTSGLDSFTALNLVSTLSQLA 190 (226)
T ss_pred ------------EEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 244566777778888888888887763
No 222
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.69 E-value=2.4e-08 Score=90.69 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=87.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA 92 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~ 92 (299)
++|.+.+++.++|+|++|+|||||+++|++.+. .+.+.+++.++... ....++. ...+.++....-...
T Consensus 23 isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~----~~~~lr~------~i~~v~q~~~lf~~t 92 (275)
T cd03289 23 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSV----PLQKWRK------AFGVIPQKVFIFSGT 92 (275)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhC----CHHHHhh------hEEEECCCcccchhh
Confidence 567789999999999999999999999999764 45567777655321 1111110 011222111111111
Q ss_pred hhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCC-----------CCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 93 LRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNG-----------FSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 93 ~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~g-----------lSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
..+.+.. . . +...+++...++.+++.. +.....+ ||+|++|+++...++..-.+
T Consensus 93 v~~nl~~--~------~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~---- 158 (275)
T cd03289 93 FRKNLDP--Y------G--KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK---- 158 (275)
T ss_pred HHHHhhh--c------c--CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC----
Confidence 1122210 0 0 111234555666777754 4445555 99999999987665543211
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+++....++.+.+.|.+.|.+..
T Consensus 159 -----------------illlDEpts~LD~~~~~~l~~~l~~~~ 185 (275)
T cd03289 159 -----------------ILLLDEPSAHLDPITYQVIRKTLKQAF 185 (275)
T ss_pred -----------------EEEEECccccCCHHHHHHHHHHHHHhc
Confidence 233556666777778888888887653
No 223
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.69 E-value=1.8e-08 Score=87.66 Aligned_cols=155 Identities=14% Similarity=0.173 Sum_probs=87.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHH-HHhhhhcCC-C
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTME-NFRYAMGKS-S 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-~~~~~~~~~-~ 89 (299)
++|.+..++.+.|.|+||+||||++|+|++.... +.|.+++.++......+ .++.- .+.++.... .
T Consensus 22 vsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~----------r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 22 VSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE----------RARLGIAYVPEGRRIFP 91 (237)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHH----------HHhCCeEeCcccccchh
Confidence 6788899999999999999999999999998874 67888888887642211 11110 111100000 0
Q ss_pred chhhhHHHhhcCccchhhcCCCc-cHHHH-HhhhcccC-CHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLE-GVKRE-LQELVQDV-DLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE 165 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p-~~~~R-~~~l~~~v-~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~ 165 (299)
.-+..+.+.- ....+.. ....+ .+.+.+-+ .+.+ ...+...+|||+.|.|+...++.+-.+
T Consensus 92 ~LTVeENL~~------g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk--------- 156 (237)
T COG0410 92 RLTVEENLLL------GAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPK--------- 156 (237)
T ss_pred hCcHHHHHhh------hhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCC---------
Confidence 0011111110 0000000 01111 22222222 1333 334446699999999987766655332
Q ss_pred HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
.+..+|+.....|+--+++.+++++.+.
T Consensus 157 ------------lLLLDEPs~GLaP~iv~~I~~~i~~l~~ 184 (237)
T COG0410 157 ------------LLLLDEPSEGLAPKIVEEIFEAIKELRK 184 (237)
T ss_pred ------------EEEecCCccCcCHHHHHHHHHHHHHHHH
Confidence 2446666677777777888888887763
No 224
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.69 E-value=2.2e-08 Score=87.38 Aligned_cols=158 Identities=14% Similarity=0.157 Sum_probs=90.3
Q ss_pred hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773 13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP 90 (299)
Q Consensus 13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~ 90 (299)
-++|.+.+ +.++|.||||+|||||+++|++.+.+ +.+.+++.++..... ......+. ....+.++......
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~---~~~~~~~~---~~i~~~~q~~~~~~ 88 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRK---KINLPPQQ---RKIGLVFQQYALFP 88 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccc---hhhhhhHh---hcEEEEecCCccCC
Confidence 45778889 99999999999999999999998754 455666654421100 00011110 00011121111111
Q ss_pred -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
....+.+...... .......+++..+++.+++... ......||+|+.+++....++..-.+
T Consensus 89 ~~t~~~~l~~~~~~-----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~------------ 151 (214)
T cd03297 89 HLNVRENLAFGLKR-----KRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPE------------ 151 (214)
T ss_pred CCCHHHHHHHHHhh-----CCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCC------------
Confidence 1111222110000 0011234456677888888654 45568899999999987665543221
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.|.+.|.+.
T Consensus 152 ---------llllDEPt~~LD~~~~~~l~~~l~~~ 177 (214)
T cd03297 152 ---------LLLLDEPFSALDRALRLQLLPELKQI 177 (214)
T ss_pred ---------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 24466777777888888888888765
No 225
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.68 E-value=4.2e-08 Score=98.16 Aligned_cols=151 Identities=18% Similarity=0.264 Sum_probs=87.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA 92 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~ 92 (299)
++|.+++|+.++|+|++|||||||++.|++... .+.+.+++.++... ....++..+ .+.++....-..+
T Consensus 369 i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~----~~~~lr~~i------~~v~Q~~~LF~~T 438 (588)
T PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELREL----DPESWRKHL------SWVGQNPQLPHGT 438 (588)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccC----CHHHHHhhe------EEecCCCcCCCcC
Confidence 467789999999999999999999999999872 25577787766432 112222111 1222211111122
Q ss_pred hhHHHhhcCccchhhcCCCc-cHHHHHhhhcccCCHH------------HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 93 LRETIVEVPNITWEDIGGLE-GVKRELQELVQDVDLN------------YIAKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 93 ~~~~l~~l~~~l~~~~~r~p-~~~~R~~~l~~~v~l~------------~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
.++.+.- .+ | -.++++...++..+++ .+...-..+||||+|+++.+.++..-.+
T Consensus 439 I~eNI~~---------g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~--- 505 (588)
T PRK11174 439 LRDNVLL---------GN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQ--- 505 (588)
T ss_pred HHHHhhc---------CC-CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCC---
Confidence 2222211 00 1 1122333333333332 1233445699999999987654433111
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
-+..+|+....+.-|.+.+.++|.+..+
T Consensus 506 ------------------IliLDE~TSaLD~~te~~i~~~l~~~~~ 533 (588)
T PRK11174 506 ------------------LLLLDEPTASLDAHSEQLVMQALNAASR 533 (588)
T ss_pred ------------------EEEEeCCccCCCHHHHHHHHHHHHHHhC
Confidence 2446778888888899999999988743
No 226
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=2.2e-08 Score=89.47 Aligned_cols=159 Identities=11% Similarity=0.243 Sum_probs=87.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|+|+||+|||||+++|++... .+.+.+++.++... ......+.. ...+..+..
T Consensus 23 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~-----~~~~~~~~~---~i~~~~q~~ 94 (251)
T PRK14251 23 ISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS-----KMDLVELRK---EVGMVFQQP 94 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc-----cchHHHhhc---cEEEEecCC
Confidence 567789999999999999999999999999764 45666776554211 000000000 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCcc-HHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEG-VKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~-~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
..-.....+.+.. ...... ...++ ..+++..+++.+++ ..+......||+|++|+++...++..-.
T Consensus 95 ~~~~~tv~enl~~-~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p----- 166 (251)
T PRK14251 95 TPFPFSVYDNVAY-GLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRP----- 166 (251)
T ss_pred ccCCCcHHHHHHH-HHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCC-----
Confidence 1111111222210 000000 00011 22344455555555 2234556789999999998766554311
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.|.+.|++.+
T Consensus 167 ----------------~llllDEP~~~LD~~~~~~l~~~l~~~~ 194 (251)
T PRK14251 167 ----------------KVVLLDEPTSALDPISSSEIEETLMELK 194 (251)
T ss_pred ----------------CEEEecCCCccCCHHHHHHHHHHHHHHH
Confidence 1244666777777888888888888764
No 227
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.68 E-value=3.3e-08 Score=99.06 Aligned_cols=150 Identities=13% Similarity=0.149 Sum_probs=88.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
.++.+++++.++|+|++|||||||++.|++...+ +.+.+++.++.... ...+++.+ .+.++....-+.
T Consensus 360 i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~----~~~l~~~i------~~v~Q~~~lF~~ 429 (592)
T PRK10790 360 INLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLS----HSVLRQGV------AMVQQDPVVLAD 429 (592)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCC----HHHHHhhe------EEEccCCccccc
Confidence 4567899999999999999999999999997764 56778887764321 11111111 122221111112
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH------------HHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY------------IAKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~------------LA~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.- .+ +-.++++..+++.+++++ +......+||||.|+++...++..-.+
T Consensus 430 Ti~~NI~~---------~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~--- 496 (592)
T PRK10790 430 TFLANVTL---------GR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQ--- 496 (592)
T ss_pred hHHHHHHh---------CC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC---
Confidence 22222211 01 111233333444444322 222335699999999987654442111
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++-|.+.+.++|++..
T Consensus 497 ------------------illlDEpts~LD~~t~~~i~~~l~~~~ 523 (592)
T PRK10790 497 ------------------ILILDEATANIDSGTEQAIQQALAAVR 523 (592)
T ss_pred ------------------EEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 244677778888888888999888764
No 228
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.68 E-value=1.4e-08 Score=100.49 Aligned_cols=161 Identities=16% Similarity=0.221 Sum_probs=89.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|+||||||||||+|+|++.+. .+.+.+++.++... ....+..+.. +...+.++..
T Consensus 28 isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~----~~~~~~~~~~--~~ig~v~Q~~ 101 (529)
T PRK15134 28 VSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA----SEQTLRGVRG--NKIAMIFQEP 101 (529)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC----CHHHHHHHhc--CceEEEecCc
Confidence 567789999999999999999999999999875 35566766554321 1111110000 0001111110
Q ss_pred C--CCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH----HHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 K--SSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY----IAKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 87 ~--~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~----LA~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
. ... ....+.+... ...... ....+..+|+..+++.+++.. +.++...||||+.|+++...++..-.+
T Consensus 102 ~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~--- 176 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEV-LSLHRG-MRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPE--- 176 (529)
T ss_pred hhhcCchhhHHHHHHHH-HHHhcC-CCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCC---
Confidence 0 000 0111111100 000000 011234567777888888742 456778999999999988766553211
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|++.
T Consensus 177 ------------------llllDEPt~~LD~~~~~~l~~~l~~l 202 (529)
T PRK15134 177 ------------------LLIADEPTTALDVSVQAQILQLLREL 202 (529)
T ss_pred ------------------EEEEcCCCCccCHHHHHHHHHHHHHH
Confidence 23455666666666666766666654
No 229
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.68 E-value=1e-08 Score=91.02 Aligned_cols=160 Identities=12% Similarity=0.110 Sum_probs=91.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.|+||+|||||+++|++... .+.+.+++.++... .... .... ...+.++......
T Consensus 21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----~~~~---~~~~--~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 21 LSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGL----PEHQ---IARA--GIGRKFQKPTVFEN 91 (242)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCC----CHHH---HHhc--CeeEeccccccCCC
Confidence 567889999999999999999999999999764 45667776544221 1010 0000 0011111111111
Q ss_pred hhhhHHHhhcCccchhh----c--CCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWED----I--GGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIR 163 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~----~--~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~ 163 (299)
....+.+... ...... + ........++..+++.+++.. +......||+|++++++...++..-.+
T Consensus 92 ~tv~~nl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~------- 163 (242)
T TIGR03411 92 LTVFENLELA-LPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPK------- 163 (242)
T ss_pred CCHHHHHHHh-hhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC-------
Confidence 1111221110 000000 0 001123456667777778854 445667899999999887654433111
Q ss_pred HHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 164 REREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|++..
T Consensus 164 --------------~lllDEPt~~LD~~~~~~l~~~l~~~~ 190 (242)
T TIGR03411 164 --------------LLLLDEPVAGMTDEETEKTAELLKSLA 190 (242)
T ss_pred --------------EEEecCCccCCCHHHHHHHHHHHHHHh
Confidence 244667777778888888888888764
No 230
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.68 E-value=1.9e-08 Score=88.22 Aligned_cols=161 Identities=14% Similarity=0.186 Sum_probs=89.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.|+||+|||||+++|++.+. .+.+.+++.++.... ........ ....+.++......
T Consensus 24 vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~~~~~~---~~i~~~~q~~~~~~~ 96 (220)
T TIGR02982 24 INLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGAS----EKELVQLR---RNIGYIFQAHNLLGF 96 (220)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcC----HhHHHHHH---hheEEEcCChhhcCC
Confidence 466788999999999999999999999999765 455666665543210 00000000 00011111111000
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+..... .... ....+...++..+++.+++.. +......||+|+.+++....++..-.+
T Consensus 97 ~t~~~n~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~------------- 161 (220)
T TIGR02982 97 LTARQNVQMALE-LQPN-LSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPK------------- 161 (220)
T ss_pred CCHHHHHHHHHH-hccC-CCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 011111110000 0000 001123456677888888854 456668899999999886654433111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++-+.+.+.+.|++.+
T Consensus 162 --------illlDEP~~~LD~~~~~~l~~~l~~~~ 188 (220)
T TIGR02982 162 --------LVLADEPTAALDSKSGRDVVELMQKLA 188 (220)
T ss_pred --------EEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 244566666777778888888887753
No 231
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.67 E-value=1.2e-08 Score=90.05 Aligned_cols=155 Identities=12% Similarity=0.143 Sum_probs=87.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|.|+||||||||+++|++.+.+ +.+.+++.++.... .....+ ....+.++.......
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---~~~~~~------~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 19 VSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP---PHERAR------AGIAYVPQGREIFPR 89 (230)
T ss_pred eeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCC---HHHHHH------hCeEEeccCCcccCC
Confidence 5678899999999999999999999999998764 55666665543210 000000 000111111111111
Q ss_pred -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCC-HHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVD-LNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~-l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
...+.+..... . . .....++...+++.++ +.. +......||+|+.++++...++..-.+
T Consensus 90 ~tv~~~l~~~~~---~--~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~------------ 151 (230)
T TIGR03410 90 LTVEENLLTGLA---A--L-PRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK------------ 151 (230)
T ss_pred CcHHHHHHHHHH---h--c-CcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC------------
Confidence 11122211000 0 0 0112223344444444 333 445567899999999887654443111
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|.+.+
T Consensus 152 ---------illlDEPt~~LD~~~~~~l~~~l~~~~ 178 (230)
T TIGR03410 152 ---------LLLLDEPTEGIQPSIIKDIGRVIRRLR 178 (230)
T ss_pred ---------EEEecCCcccCCHHHHHHHHHHHHHHH
Confidence 244667777778888889988887763
No 232
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=2.4e-08 Score=89.33 Aligned_cols=161 Identities=11% Similarity=0.206 Sum_probs=88.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.|+||||||||+++|++... .+.+.+++.++..... ....++ . ...+.++..
T Consensus 24 is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~--~~~~~~---~---~i~~v~q~~ 95 (251)
T PRK14244 24 INLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT--NVVLLR---A---KVGMVFQKP 95 (251)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc--chHHHh---h---hEEEEecCc
Confidence 567789999999999999999999999999754 4556666654432100 000010 0 001112111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
..-.....+.+..... ............+++..+++.+++. .+......||+|++|+++...++..-.+
T Consensus 96 ~~~~~tv~~ni~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~----- 169 (251)
T PRK14244 96 NPFPKSIYDNVAYGPK-LHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPT----- 169 (251)
T ss_pred ccccCCHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCC-----
Confidence 1111111121110000 0000000012233445566666662 2345567899999999887655443111
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++.+
T Consensus 170 ----------------llllDEPt~~LD~~~~~~l~~~l~~~~ 196 (251)
T PRK14244 170 ----------------MLLMDEPCSALDPVATNVIENLIQELK 196 (251)
T ss_pred ----------------EEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 244666777777888888888888764
No 233
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.67 E-value=1e-08 Score=90.49 Aligned_cols=154 Identities=18% Similarity=0.209 Sum_probs=87.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC------CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA------NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK 87 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~------~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~ 87 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++... .... ....+.++...
T Consensus 5 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~----------~~~~--~~i~~~~q~~~ 72 (230)
T TIGR02770 5 LNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL----------SIRG--RHIATIMQNPR 72 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh----------hhhh--heeEEEecCch
Confidence 5678899999999999999999999999998754 4566665544211 0000 00011111110
Q ss_pred --CCc-hhhhHHHhhcCccchhhcCC-CccHHHHHhhhcccCCHH----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 88 --SSP-SALRETIVEVPNITWEDIGG-LEGVKRELQELVQDVDLN----YIAKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 88 --~~~-~~~~~~l~~l~~~l~~~~~r-~p~~~~R~~~l~~~v~l~----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
... ....+.+... .. .... .....+++..+++.+++. .+......||+|+.|+++...++..-.
T Consensus 73 ~~~~~~~t~~~~~~~~---~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p---- 144 (230)
T TIGR02770 73 TAFNPLFTMGNHAIET---LR-SLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEP---- 144 (230)
T ss_pred hhcCcccCHHHHHHHH---HH-HcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCC----
Confidence 000 0111111100 00 0000 112234566677777774 344556789999999998765543311
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.|.+.|++..
T Consensus 145 -----------------~vllLDEPt~~LD~~~~~~l~~~l~~~~ 172 (230)
T TIGR02770 145 -----------------PFLIADEPTTDLDVVNQARVLKLLRELR 172 (230)
T ss_pred -----------------CEEEEcCCccccCHHHHHHHHHHHHHHH
Confidence 1244667777777788888888887753
No 234
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.67 E-value=2.7e-08 Score=89.02 Aligned_cols=160 Identities=12% Similarity=0.227 Sum_probs=88.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||+|||||+++|++... .+.+.+++.++.... .....++. ...+.++..
T Consensus 25 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~--~~~~~~~~------~i~~v~q~~ 96 (253)
T PRK14242 25 ISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH--VDVVELRR------RVGMVFQKP 96 (253)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc--cCHHHHhh------cEEEEecCC
Confidence 567789999999999999999999999999742 456777766543210 00001110 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
..-.....+.+..... ... ........+++..+++.+++. .+......||+|+.|+++...++..-.+
T Consensus 97 ~~~~~tv~enl~~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~----- 169 (253)
T PRK14242 97 NPFPKSIFENVAYGLR-VNG-VKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPE----- 169 (253)
T ss_pred CCCcCcHHHHHHHHHH-HcC-CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCC-----
Confidence 1111111122110000 000 000012234555566666652 2345567899999999887655433111
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|++.+
T Consensus 170 ----------------llllDEPt~~LD~~~~~~l~~~l~~~~ 196 (253)
T PRK14242 170 ----------------VLLMDEPASALDPIATQKIEELIHELK 196 (253)
T ss_pred ----------------EEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 244667777778888888888888764
No 235
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.67 E-value=1.5e-08 Score=90.59 Aligned_cols=161 Identities=15% Similarity=0.164 Sum_probs=89.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchh-----hhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPE-----LLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~-----l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||||||||+++|++...+ +.+.+++.+ +... .......... ....+..+..
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~----~~~~~~~~~~--~~i~~~~q~~ 95 (253)
T TIGR02323 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQL----SEAERRRLMR--TEWGFVHQNP 95 (253)
T ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccC----CHHHHHHhhh--cceEEEEeCc
Confidence 5678899999999999999999999999998754 445555433 2111 0000000000 0001111111
Q ss_pred CC--Cc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KS--SP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~--~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
.. .. ....+.+........ ........+++..+++.+++. .+......+|+|++++++...++..-.+
T Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~----- 168 (253)
T TIGR02323 96 RDGLRMRVSAGANIGERLMAIG--ARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPR----- 168 (253)
T ss_pred ccccCccccHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCC-----
Confidence 00 00 000111110000000 000112345666777778873 4566778899999999987765544221
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|.+.
T Consensus 169 ----------------vlllDEP~~~LD~~~~~~l~~~l~~~ 194 (253)
T TIGR02323 169 ----------------LVFMDEPTGGLDVSVQARLLDLLRGL 194 (253)
T ss_pred ----------------EEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 24466777777888888888888765
No 236
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.67 E-value=2.9e-08 Score=90.00 Aligned_cols=168 Identities=13% Similarity=0.164 Sum_probs=90.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc----------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ----------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY 83 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~----------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~ 83 (299)
++|.+.+++.++|+||||||||||+++|++.+. .+.+.+++.++... .....+.. ..+.+
T Consensus 20 vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~------~~~v~ 89 (272)
T PRK13547 20 LSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI----DAPRLARL------RAVLP 89 (272)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC----CHHHHHhh------cEEec
Confidence 467789999999999999999999999999765 34566666544221 11111110 01112
Q ss_pred hhcC-CCchhhhHHHhhcCccchhhcCCC-ccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 84 AMGK-SSPSALRETIVEVPNITWEDIGGL-EGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 84 ~~~~-~~~~~~~~~l~~l~~~l~~~~~r~-p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
+... .......+.+.............. ....+++..+++.+++..+. +....||+|+++++....++....+.-.
T Consensus 90 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~- 168 (272)
T PRK13547 90 QAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHD- 168 (272)
T ss_pred ccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccc-
Confidence 1111 011112222211000000000001 12234566777788886544 4557899999999987766552100000
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
......-+..+|+....++.+.+.|.+.|.+.
T Consensus 169 -----------~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 200 (272)
T PRK13547 169 -----------AAQPPRYLLLDEPTAALDLAHQHRLLDTVRRL 200 (272)
T ss_pred -----------cCCCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 00001124456667777788888888877765
No 237
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=2.2e-08 Score=89.52 Aligned_cols=160 Identities=11% Similarity=0.192 Sum_probs=88.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|+|+||||||||+++|++... .+.+.+++.++..... ....++. ...+.++..
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~--~~~~~~~------~i~~~~q~~ 94 (252)
T PRK14256 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV--DPVSIRR------RVGMVFQKP 94 (252)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC--ChHHhhc------cEEEEecCC
Confidence 467789999999999999999999999999863 3667777665532100 0001100 001122111
Q ss_pred CCCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 87 ~~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
..-. ....+.+.. ...... .....+..++...+++.+++. .+......||+|++|+++..+++..-.
T Consensus 95 ~~~~~~tv~enl~~-~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p----- 167 (252)
T PRK14256 95 NPFPAMSIYDNVIA-GYKLNG-RVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKP----- 167 (252)
T ss_pred CCCCcCcHHHHHHh-HHHhcC-CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCC-----
Confidence 1111 111122210 000000 000112234555666666652 233455789999999998776554311
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.+.+.|++..
T Consensus 168 ----------------~llllDEP~~gLD~~~~~~l~~~l~~~~ 195 (252)
T PRK14256 168 ----------------EVILMDEPASALDPISTLKIEELIEELK 195 (252)
T ss_pred ----------------CEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 1244667777777788888888887764
No 238
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.67 E-value=2.6e-08 Score=89.01 Aligned_cols=163 Identities=17% Similarity=0.212 Sum_probs=90.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-ch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-PS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~~ 91 (299)
++|.+.+++.++|.|+||+|||||+++|++... .+.+.+++.++... ....++. ...+.++..... ..
T Consensus 15 vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~----~~~~~~~------~i~~v~q~~~~~~~~ 84 (248)
T PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAW----SAAELAR------HRAYLSQQQTPPFAM 84 (248)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcC----CHHHHhh------heEEecccCccCCCc
Confidence 567889999999999999999999999999753 34566666554321 1111110 001111111111 11
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA 170 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~ 170 (299)
...+.+... ... ........+++..+++.+++... .+....||+|+.|++....++.......
T Consensus 85 tv~~nl~~~-~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~------------ 148 (248)
T PRK03695 85 PVFQYLTLH-QPD---KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDI------------ 148 (248)
T ss_pred cHHHHHHhc-Ccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccc------------
Confidence 111222111 000 00111224566677888888544 4566889999999988766554200000
Q ss_pred CCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+. ...+..+|+....++.+...|.+.|++++
T Consensus 149 -~p~-p~llllDEPt~~LD~~~~~~l~~~L~~~~ 180 (248)
T PRK03695 149 -NPA-GQLLLLDEPMNSLDVAQQAALDRLLSELC 180 (248)
T ss_pred -CCC-CCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 000 01244566667777778888888887663
No 239
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.66 E-value=2.3e-08 Score=86.54 Aligned_cols=149 Identities=17% Similarity=0.161 Sum_probs=88.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~ 90 (299)
++|.+.+++.++|.|+||+|||||+++|++...+ +.+.+++.++... . .. +. ....+.++..... .
T Consensus 19 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~-~~----~~--~~i~~~~q~~~~~~~ 87 (201)
T cd03231 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ----R-DS----IA--RGLLYLGHAPGIKTT 87 (201)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc----c-HH----hh--hheEEeccccccCCC
Confidence 5677899999999999999999999999998654 4555665443211 0 00 11 0001111111111 1
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.... . ....+++..+++.+++..+. .....||+|+.++++...++..-.
T Consensus 88 ~tv~e~l~~~~--------~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p-------------- 144 (201)
T cd03231 88 LSVLENLRFWH--------A-DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGR-------------- 144 (201)
T ss_pred cCHHHHHHhhc--------c-cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCC--------------
Confidence 11122221100 0 01245666777778885543 455789999999988755443311
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
..+..+|+....++.+.+.|.+.|++.
T Consensus 145 -------~llllDEPt~~LD~~~~~~l~~~l~~~ 171 (201)
T cd03231 145 -------PLWILDEPTTALDKAGVARFAEAMAGH 171 (201)
T ss_pred -------CEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 134466777777788888888888765
No 240
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.66 E-value=4.7e-08 Score=99.73 Aligned_cols=151 Identities=14% Similarity=0.199 Sum_probs=88.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
.++.+++|+.++|+|++|||||||++.|++...+ +.+.+++.++.... ...++... .+.++....-..
T Consensus 484 i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~----~~~lr~~i------~~v~Q~~~lf~~ 553 (694)
T TIGR03375 484 VSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQID----PADLRRNI------GYVPQDPRLFYG 553 (694)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC----HHHHHhcc------EEECCChhhhhh
Confidence 5677899999999999999999999999997764 66778877664321 11111110 111111110011
Q ss_pred hhhHHHhhcCccchhhcCCCc-cHHHHHhhhcccCCHHH-H-----------HHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLE-GVKRELQELVQDVDLNY-I-----------AKVTNGFSGADLTEICQRACKLAIRQSI 158 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p-~~~~R~~~l~~~v~l~~-L-----------A~~t~glSggDl~~Lv~~A~~~a~~r~~ 158 (299)
+.++.+.- . .| -.++++...++..++.+ + ...-..+||||.|+++...++..-.
T Consensus 554 TI~eNi~~---------~-~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p--- 620 (694)
T TIGR03375 554 TLRDNIAL---------G-APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDP--- 620 (694)
T ss_pred hHHHHHhC---------C-CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC---
Confidence 12222210 0 01 11233333444444422 2 2233469999999998765443211
Q ss_pred HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
.-+..+|+....++.+.+.+.++|.+..+
T Consensus 621 ------------------~iliLDE~Ts~LD~~te~~i~~~l~~~~~ 649 (694)
T TIGR03375 621 ------------------PILLLDEPTSAMDNRSEERFKDRLKRWLA 649 (694)
T ss_pred ------------------CEEEEeCCCCCCCHHHHHHHHHHHHHHhC
Confidence 12456778888889999999999988743
No 241
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.3e-08 Score=102.59 Aligned_cols=161 Identities=16% Similarity=0.217 Sum_probs=93.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~ 89 (299)
++|.+.+++.++|+|+||||||||+++|++.+. .+.+.+++.++... .....+.+.. ...+.++.. ...
T Consensus 343 vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~----~~~~~~~~~~---~i~~v~Q~~~~~l~ 415 (623)
T PRK10261 343 VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL----SPGKLQALRR---DIQFIFQDPYASLD 415 (623)
T ss_pred eEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC----CHHHHHHhcC---CeEEEecCchhhcC
Confidence 577889999999999999999999999999875 45667776655321 1111111100 001111111 011
Q ss_pred c-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 P-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER 166 (299)
Q Consensus 90 ~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~ 166 (299)
. ....+.+.. +..... ........+++..+++.+++. . +.+....||||++|+++...++..-.+
T Consensus 416 ~~~tv~~~l~~-~~~~~~-~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~---------- 483 (623)
T PRK10261 416 PRQTVGDSIME-PLRVHG-LLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPK---------- 483 (623)
T ss_pred CCCCHHHHHHH-HHHHcC-CCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC----------
Confidence 1 111122211 000000 000112345677888888883 3 556678999999999998766543211
Q ss_pred HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.+.+.|++++
T Consensus 484 -----------llllDEPts~LD~~~~~~i~~ll~~l~ 510 (623)
T PRK10261 484 -----------VIIADEAVSALDVSIRGQIINLLLDLQ 510 (623)
T ss_pred -----------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 244566677777778888888876653
No 242
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.66 E-value=2.6e-08 Score=88.93 Aligned_cols=165 Identities=18% Similarity=0.192 Sum_probs=91.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhccc-cccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWF-GESEANVRDIFDKVTMENFRYAMGKSSP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~-g~~~~~i~~~f~~a~~~~~~~~~~~~~~ 90 (299)
++|.+.+++.++|.||||+|||||+++|++.+.+ +.+.+++.++..... .........+.. ...+.++......
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~---~i~~v~q~~~~~~ 98 (250)
T PRK11264 22 IDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQ---HVGFVFQNFNLFP 98 (250)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhh---hEEEEecCcccCC
Confidence 5677899999999999999999999999998654 556666655432100 000001111110 0012221111111
Q ss_pred -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
....+.+......... .......+++..+++.+++.. +......||+|++|+++...++..-.+
T Consensus 99 ~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~------------ 164 (250)
T PRK11264 99 HRTVLENIIEGPVIVKG--EPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPE------------ 164 (250)
T ss_pred CCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCC------------
Confidence 1122222110000000 001122345566777777754 445668899999999987665543211
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|.+..
T Consensus 165 ---------lllLDEPt~~LD~~~~~~l~~~l~~~~ 191 (250)
T PRK11264 165 ---------VILFDEPTSALDPELVGEVLNTIRQLA 191 (250)
T ss_pred ---------EEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 244667777778888888888887764
No 243
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=1.9e-08 Score=92.77 Aligned_cols=163 Identities=10% Similarity=0.088 Sum_probs=90.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhcc-cc------------cc----HHHHHHHHH
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMW-FG------------ES----EANVRDIFD 74 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~-~g------------~~----~~~i~~~f~ 74 (299)
++|.+.+++.++|.||||||||||+++|++.+.+ +.+.+++.++.... .+ .. ......+.
T Consensus 26 vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 104 (305)
T PRK13651 26 VSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIR- 104 (305)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHH-
Confidence 5778899999999999999999999999997654 55556544331100 00 00 00011110
Q ss_pred HHHHHHHhhhhc--CCCchhhhHHHhhcCccchhhcCCC-ccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHH
Q psy13773 75 KVTMENFRYAMG--KSSPSALRETIVEVPNITWEDIGGL-EGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRA 149 (299)
Q Consensus 75 ~a~~~~~~~~~~--~~~~~~~~~~l~~l~~~l~~~~~r~-p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A 149 (299)
+...+.++.. ........+.+. +. ... .... ....+|+..+++.+++. . +.+....||||++|+++...
T Consensus 105 --~~ig~v~Q~~~~~l~~~tv~e~i~-~~--~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~ 178 (305)
T PRK13651 105 --RRVGVVFQFAEYQLFEQTIEKDII-FG--PVS-MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAG 178 (305)
T ss_pred --hceEEEeeCcccccccccHHHHHH-hh--HHH-cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 0001111110 001111112221 10 000 0111 23356777888888883 4 45666899999999998766
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 150 CKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 150 ~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
++..-.+ -+..+|+....++.+.+.|.+.|++.+
T Consensus 179 aL~~~P~---------------------lLlLDEPt~~LD~~~~~~l~~~l~~l~ 212 (305)
T PRK13651 179 ILAMEPD---------------------FLVFDEPTAGLDPQGVKEILEIFDNLN 212 (305)
T ss_pred HHHhCCC---------------------EEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 5543222 244566666777777778888777653
No 244
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.66 E-value=2e-08 Score=90.65 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=89.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CC-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KS- 88 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~- 88 (299)
++|.+.+++.++|.||||||||||+++|++...+ +.+.+++.++... .......+.. ...+.++.. ..
T Consensus 30 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~----~~~~~~~~~~---~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 30 VSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQL----DRKQRRAFRR---DVQLVFQDSPSAVN 102 (265)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc----CHHHHHHHhh---ceEEEecChhhhcC
Confidence 5677899999999999999999999999998754 5566666554321 0011100000 001111110 00
Q ss_pred CchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 89 SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER 166 (299)
Q Consensus 89 ~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~ 166 (299)
......+.+....... .. .......+++..+++.+++. .+ ......||+|+.|+++...++..-.
T Consensus 103 ~~~tv~~~l~~~~~~~-~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p----------- 169 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHL-TS-LDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKP----------- 169 (265)
T ss_pred CCCCHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCC-----------
Confidence 0011112111000000 00 00112345666778888883 43 4566889999999988665443311
Q ss_pred HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.-+..+|+....++.+.+.|.+.|++..
T Consensus 170 ----------~illLDEPt~~LD~~~~~~l~~~l~~~~ 197 (265)
T TIGR02769 170 ----------KLIVLDEAVSNLDMVLQAVILELLRKLQ 197 (265)
T ss_pred ----------CEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1244566677777788888888887763
No 245
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.66 E-value=2.5e-08 Score=89.20 Aligned_cols=164 Identities=16% Similarity=0.194 Sum_probs=91.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhcc--cc----ccHHHHHHHHHHHHHHHHhhhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMW--FG----ESEANVRDIFDKVTMENFRYAM 85 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~--~g----~~~~~i~~~f~~a~~~~~~~~~ 85 (299)
++|.+.+++.++|.||||||||||+++|++...+ +.+.+++.++.... .+ ........+ . +...+.++.
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~-~--~~i~~v~q~ 95 (252)
T TIGR03005 19 LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQM-R--NKIGMVFQS 95 (252)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHH-h--hCeEEEecC
Confidence 5678899999999999999999999999997653 55666665543210 00 000111110 0 000111111
Q ss_pred cCCC-chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 86 GKSS-PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIR 163 (299)
Q Consensus 86 ~~~~-~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~ 163 (299)
.... .....+.+..... .... .......+++..+++.+++..+ ......||+|+.++++...++..-.+
T Consensus 96 ~~~~~~~tv~~nl~~~~~-~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~------- 166 (252)
T TIGR03005 96 FNLFPHKTVLDNVTEAPV-LVLG-MARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPK------- 166 (252)
T ss_pred cccCCCCcHHHHHHHHHH-HhcC-CCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCC-------
Confidence 1111 1111122111000 0000 0112233456677777888554 45567899999999887665543111
Q ss_pred HHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 164 REREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|++.
T Consensus 167 --------------llllDEP~~~LD~~~~~~l~~~l~~~ 192 (252)
T TIGR03005 167 --------------VMLFDEVTSALDPELVGEVLNVIRRL 192 (252)
T ss_pred --------------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 24466777777788888888888775
No 246
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.65 E-value=9.3e-08 Score=79.65 Aligned_cols=164 Identities=16% Similarity=0.225 Sum_probs=88.5
Q ss_pred eccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC--eecccch-hhhhccccccHHHHHHHHHHHHHHH
Q psy13773 4 TYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGP-ELLTMWFGESEANVRDIFDKVTMEN 80 (299)
Q Consensus 4 ~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~--~i~i~~~-~l~~~~~g~~~~~i~~~f~~a~~~~ 80 (299)
.+|... -++|.++.++++.|+||+|+||||++|+|-.-.... .|.+.-. ++.+ ........+-++.+...-+
T Consensus 23 ~LpV~~---~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vd-l~~a~pr~vl~vRr~TiGy- 97 (235)
T COG4778 23 RLPVLR---NVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVD-LVTAEPREVLEVRRTTIGY- 97 (235)
T ss_pred Eeeeee---ceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhh-hhccChHHHHHHHHhhhHH-
Confidence 345444 467889999999999999999999999998865543 3333211 1111 0111222222222221111
Q ss_pred HhhhhcCCCchhhhHHHhhcCccc------hhhc-CC--CccHHHHHhhhcccCCH-HH-HHHhcCCCCHHHHHHHHHHH
Q psy13773 81 FRYAMGKSSPSALRETIVEVPNIT------WEDI-GG--LEGVKRELQELVQDVDL-NY-IAKVTNGFSGADLTEICQRA 149 (299)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~~l------~~~~-~r--~p~~~~R~~~l~~~v~l-~~-LA~~t~glSggDl~~Lv~~A 149 (299)
..+++..+|... .+.+ .. ......|+..++..+++ +. .+.-+..||||+.|++-...
T Consensus 98 ------------VSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaR 165 (235)
T COG4778 98 ------------VSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIAR 165 (235)
T ss_pred ------------HHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhh
Confidence 112222221100 1111 11 23445667788888888 33 45566889999999987655
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 150 CKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 150 ~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
.+..-... +..+++..+.+.-+.+-..+-+.+.|.
T Consensus 166 gfivd~pI---------------------LLLDEPTasLDa~Nr~vVveli~e~Ka 200 (235)
T COG4778 166 GFIVDYPI---------------------LLLDEPTASLDATNRAVVVELIREAKA 200 (235)
T ss_pred hhhccCce---------------------EEecCCcccccccchHHHHHHHHHHHh
Confidence 44332221 223444455555555556666666554
No 247
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.65 E-value=3.3e-08 Score=101.04 Aligned_cols=150 Identities=14% Similarity=0.129 Sum_probs=86.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
.++.+++|+.++|+|++|||||||++.|++...+ +.+.+++.++.... ...++..+ .+.++....-..
T Consensus 498 isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~----~~~lr~~i------~~v~Q~~~lf~g 567 (710)
T TIGR03796 498 FSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP----REVLANSV------AMVDQDIFLFEG 567 (710)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCC----HHHHHhhe------eEEecCChhhhc
Confidence 4567899999999999999999999999997754 66788887764321 11111111 111111111111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH------------HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN------------YIAKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~------------~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.- .+....++++...++..+++ .+...-..+||||.|+++...++..-.+
T Consensus 568 Ti~eNi~l---------~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~--- 635 (710)
T TIGR03796 568 TVRDNLTL---------WDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPS--- 635 (710)
T ss_pred cHHHHhhC---------CCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCC---
Confidence 22222210 00001122222223322321 1334446699999999987655433111
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....+..|.+.+.++|++.
T Consensus 636 ------------------iliLDEptS~LD~~te~~i~~~l~~~ 661 (710)
T TIGR03796 636 ------------------ILILDEATSALDPETEKIIDDNLRRR 661 (710)
T ss_pred ------------------EEEEECccccCCHHHHHHHHHHHHhc
Confidence 24467778888888999999998763
No 248
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.65 E-value=2.5e-08 Score=90.08 Aligned_cols=160 Identities=12% Similarity=0.169 Sum_probs=87.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++.... .....++. ...+.++..
T Consensus 39 vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~--~~~~~~~~------~i~~v~q~~ 110 (267)
T PRK14237 39 IDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE--INVYEMRK------HIGMVFQRP 110 (267)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc--CChHHHhc------ceEEEecCC
Confidence 567789999999999999999999999999764 466777766552110 00000110 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
..-.....+.+.. ...... .........++..+++.+++ ..+.+....||+|++++++...++..-.+
T Consensus 111 ~~~~~tv~eni~~-~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~----- 183 (267)
T PRK14237 111 NPFAKSIYENITF-ALERAG-VKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPD----- 183 (267)
T ss_pred ccccccHHHHHHh-HHHhcC-CCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCC-----
Confidence 1111111122111 000000 00001123444555555554 23455668899999999887654443111
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+++....++.+.+.+.+.|.+.+
T Consensus 184 ----------------lllLDEPt~~LD~~~~~~l~~~l~~~~ 210 (267)
T PRK14237 184 ----------------ILLMDEPASALDPISTMQLEETMFELK 210 (267)
T ss_pred ----------------EEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 244566667777777888888887764
No 249
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.65 E-value=1.8e-08 Score=88.58 Aligned_cols=160 Identities=15% Similarity=0.167 Sum_probs=87.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~ 89 (299)
++|.+.+++.++|.||||||||||+++|++...+ +.+.+++.++... ....... +. +...+.++... ..
T Consensus 24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~~~~~~~-~~--~~i~~~~q~~~~~~~ 96 (228)
T cd03257 24 VSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKL----SRRLRKI-RR--KEIQMVFQDPMSSLN 96 (228)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccc----chhhHHH-hh--ccEEEEecCchhhcC
Confidence 4677899999999999999999999999997653 5566666554321 0000000 00 00011111110 00
Q ss_pred -chhhhHHHhhcCccchhhcCCCc-cHHHHH-hhhcccCCH-H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 -PSALRETIVEVPNITWEDIGGLE-GVKREL-QELVQDVDL-N-YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRR 164 (299)
Q Consensus 90 -~~~~~~~l~~l~~~l~~~~~r~p-~~~~R~-~~l~~~v~l-~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~ 164 (299)
.....+.+... ......... ....+. ..+++.+++ . .+......||+|+.|++....++..-.+
T Consensus 97 ~~~tv~~nl~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~-------- 165 (228)
T cd03257 97 PRMTIGEQIAEP---LRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPK-------- 165 (228)
T ss_pred CcCCHHHHHHHH---HHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCC--------
Confidence 01111111100 000000001 111222 356667777 3 3456668899999999887655443111
Q ss_pred HHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++..
T Consensus 166 -------------lllLDEPt~~LD~~~~~~l~~~l~~~~ 192 (228)
T cd03257 166 -------------LLIADEPTSALDVSVQAQILDLLKKLQ 192 (228)
T ss_pred -------------EEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 244667777778888899999888763
No 250
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=2.4e-08 Score=91.17 Aligned_cols=158 Identities=11% Similarity=0.223 Sum_probs=89.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++..... ....++ +...+.++..
T Consensus 58 is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~--~~~~~~------~~i~~v~q~~ 129 (285)
T PRK14254 58 VSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV--DPVALR------RRIGMVFQKP 129 (285)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc--chHhhh------ccEEEEecCC
Confidence 467789999999999999999999999999764 4566777655421100 000000 0001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
........+.+... .... .......+++..+++.+++ ..+......||+|++|+++...++..-.+
T Consensus 130 ~l~~~tv~enl~~~-~~~~---~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~----- 200 (285)
T PRK14254 130 NPFPKSIYDNVAYG-LKIQ---GYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPE----- 200 (285)
T ss_pred ccCcCCHHHHHHHH-HHHc---CCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCC-----
Confidence 11111111211100 0000 0011234455566666654 23456678999999999987665543111
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.+.++|++.+
T Consensus 201 ----------------lLLLDEPts~LD~~~~~~l~~~L~~~~ 227 (285)
T PRK14254 201 ----------------VILMDEPASALDPVATSKIEDLIEELA 227 (285)
T ss_pred ----------------EEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 244667777788888888988888774
No 251
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.65 E-value=5.4e-08 Score=97.18 Aligned_cols=151 Identities=17% Similarity=0.244 Sum_probs=88.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
+++.+++++.++|+||+|||||||++.|++... .+.+.+++.++... ....++..+ .+.++....-..
T Consensus 359 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~----~~~~~r~~i------~~v~Q~~~lf~~ 428 (574)
T PRK11160 359 LSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADY----SEAALRQAI------SVVSQRVHLFSA 428 (574)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhC----CHHHHHhhe------eEEcccchhhcc
Confidence 456789999999999999999999999999775 46677887766432 111121111 111111110011
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-----------HHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-----------AKVTNGFSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-----------A~~t~glSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
+.++.+.- .+....++++...++.+++++. ......+|||+.|+++...++..-.+
T Consensus 429 ti~~Ni~~---------~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~---- 495 (574)
T PRK11160 429 TLRDNLLL---------AAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAP---- 495 (574)
T ss_pred cHHHHhhc---------CCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCC----
Confidence 11111110 0001122334444455555332 22445699999999987654433111
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.+.++|.+..
T Consensus 496 -----------------ililDE~ts~lD~~t~~~i~~~l~~~~ 522 (574)
T PRK11160 496 -----------------LLLLDEPTEGLDAETERQILELLAEHA 522 (574)
T ss_pred -----------------EEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 244667778888889999999998774
No 252
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.65 E-value=3.5e-08 Score=88.21 Aligned_cols=160 Identities=14% Similarity=0.235 Sum_probs=87.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+|+.++|.||||+|||||+++|++... .+.+.+++.++..... ....++ . ...+.++..
T Consensus 24 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~--~~~~~~---~---~i~~v~q~~ 95 (252)
T PRK14239 24 VSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT--DTVDLR---K---EIGMVFQQP 95 (252)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc--chHhhh---h---cEEEEecCC
Confidence 467788999999999999999999999998632 4667777665532100 000000 0 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
..-.....+.+... ..... ........+++..+++.+++ ..+......||+|++++++...++..-.+
T Consensus 96 ~~~~~tv~enl~~~-~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~----- 168 (252)
T PRK14239 96 NPFPMSIYENVVYG-LRLKG-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPK----- 168 (252)
T ss_pred ccCcCcHHHHHHHH-HHHcC-CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCC-----
Confidence 11111111221100 00000 00001123444455555553 23456668899999999987665543211
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.+.+.|++..
T Consensus 169 ----------------llllDEPt~~LD~~~~~~l~~~l~~~~ 195 (252)
T PRK14239 169 ----------------IILLDEPTSALDPISAGKIEETLLGLK 195 (252)
T ss_pred ----------------EEEEcCCccccCHHHHHHHHHHHHHHh
Confidence 244666777777788888888887763
No 253
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=3.7e-08 Score=87.95 Aligned_cols=159 Identities=14% Similarity=0.249 Sum_probs=85.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||+|||||+++|++... .+.+.+++.++.... ....++. ...+.++..
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~~------~i~~~~q~~ 92 (249)
T PRK14253 22 INLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI---DVADLRI------KVGMVFQKP 92 (249)
T ss_pred ceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc---chHHHHh------heeEEecCC
Confidence 557789999999999999999999999999765 355666665442110 0011110 001122111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
........+.+..... ... ........+++..+++.+++ ..+......||+|+++++....++..-.
T Consensus 93 ~~~~~tv~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p------ 164 (249)
T PRK14253 93 NPFPMSIYENVAYGLR-AQG-IKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEP------ 164 (249)
T ss_pred CcCcccHHHHHHhHHH-hcC-CCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCC------
Confidence 1111111111110000 000 00001122344444444443 3345566789999999988765443311
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.+.+.|++..
T Consensus 165 ---------------~llllDEP~~~LD~~~~~~l~~~l~~~~ 192 (249)
T PRK14253 165 ---------------DVILMDEPTSALDPIATHKIEELMEELK 192 (249)
T ss_pred ---------------CEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 1244666777777788888888888764
No 254
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.65 E-value=4e-08 Score=86.52 Aligned_cols=145 Identities=12% Similarity=0.109 Sum_probs=84.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++... .. ...+. ...
T Consensus 41 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-------------~~--~~~~~------~~~ 99 (224)
T cd03220 41 VSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-------------GL--GGGFN------PEL 99 (224)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-------------cc--cccCC------CCC
Confidence 4577899999999999999999999999997653 4555665433100 00 00000 000
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA 170 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~ 170 (299)
...+.+..... ... .......++...+++.+++... ......||+|+++++....++..-.
T Consensus 100 tv~enl~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p--------------- 161 (224)
T cd03220 100 TGRENIYLNGR-LLG--LSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEP--------------- 161 (224)
T ss_pred cHHHHHHHHHH-HcC--CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC---------------
Confidence 11111110000 000 0011223345566666777544 4455889999999987655443311
Q ss_pred CCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
..+..+|+....++.+...|.++|++.
T Consensus 162 ------~llllDEP~~gLD~~~~~~~~~~l~~~ 188 (224)
T cd03220 162 ------DILLIDEVLAVGDAAFQEKCQRRLREL 188 (224)
T ss_pred ------CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 124466677777778888888888775
No 255
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=2.6e-08 Score=90.97 Aligned_cols=161 Identities=14% Similarity=0.246 Sum_probs=88.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh-------cCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-------QANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l-------~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||+|||||+++|++.. ..+.+.+++.++..... ....++. ...+.++..
T Consensus 58 vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~--~~~~~~~------~i~~v~q~~ 129 (286)
T PRK14275 58 VNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT--DEVLLRK------KIGMVFQKP 129 (286)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc--chHHhhh------cEEEECCCC
Confidence 46778999999999999999999999999963 34556677655432100 0000110 001112111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
........+.+.. ...... ........+++..+++.+++ +.+......||+|++|+++...++..-.+
T Consensus 130 ~l~~~tv~enl~~-~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~----- 202 (286)
T PRK14275 130 NPFPKSIFDNIAY-GPRLHG-INDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPE----- 202 (286)
T ss_pred CCCccCHHHHHHh-HHHhcC-CCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCC-----
Confidence 1111112222210 000000 00001123344445544443 23455668899999999987665543221
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
.+..+|+....++.+.+.|.+.|++.+.
T Consensus 203 ----------------lllLDEPt~gLD~~~~~~l~~~L~~~~~ 230 (286)
T PRK14275 203 ----------------ILLLDEPTSALDPKATAKIEDLIQELRG 230 (286)
T ss_pred ----------------EEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 2446677777788888889888887643
No 256
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=2.9e-08 Score=89.23 Aligned_cols=160 Identities=13% Similarity=0.212 Sum_probs=88.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.|+||+|||||+++|++... .+.+.+++.++.... .....++. ...+.++..
T Consensus 26 isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~--~~~~~~~~------~i~~v~q~~ 97 (259)
T PRK14260 26 ISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR--ININRLRR------QIGMVFQRP 97 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc--cchHhhhh------heEEEeccc
Confidence 567789999999999999999999999999764 355667665542110 00000100 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
........+.+... ..... .....+..++...+++.+++ ..+......||+|++++++...++..-.
T Consensus 98 ~l~~~tv~enl~~~-~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p------ 169 (259)
T PRK14260 98 NPFPMSIYENVAYG-VRISA-KLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKP------ 169 (259)
T ss_pred ccCCccHHHHHHHH-HHHhc-CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCC------
Confidence 11111111111100 00000 00001223444455555554 2344566789999999998765553211
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.|.+.|++.+
T Consensus 170 ---------------~lllLDEPt~~LD~~~~~~l~~~l~~~~ 197 (259)
T PRK14260 170 ---------------KVLLMDEPCSALDPIATMKVEELIHSLR 197 (259)
T ss_pred ---------------CEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 1245667777788888999999888764
No 257
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=1e-08 Score=93.43 Aligned_cols=158 Identities=8% Similarity=0.076 Sum_probs=89.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~ 89 (299)
++|.+.+|+.++|+|+||+|||||+++|++.+. .+.+.+++.++... ......++. ...+.++... ..
T Consensus 25 vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~--~~~~~~~~~------~ig~v~q~~~~~~~ 96 (283)
T PRK13636 25 ININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYS--RKGLMKLRE------SVGMVFQDPDNQLF 96 (283)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCC--cchHHHHHh------hEEEEecCcchhhc
Confidence 467789999999999999999999999999765 45667776654210 000011110 0011111110 00
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.....+.+... ....-.......+++..+++.+++..+ ......||+|++|++....++..-.+
T Consensus 97 ~~tv~e~l~~~---~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~------------ 161 (283)
T PRK13636 97 SASVYQDVSFG---AVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK------------ 161 (283)
T ss_pred cccHHHHHHhH---HHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC------------
Confidence 11112222110 000000111224566778888888654 45568899999999987665543221
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.|.+.|++.
T Consensus 162 ---------lLilDEPt~gLD~~~~~~l~~~l~~l 187 (283)
T PRK13636 162 ---------VLVLDEPTAGLDPMGVSEIMKLLVEM 187 (283)
T ss_pred ---------EEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 23355666666777777777777665
No 258
>KOG0731|consensus
Probab=98.64 E-value=3.6e-09 Score=105.98 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCC-cccccCCCCCCCeeee
Q psy13773 207 VNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGP-NSAPANESGTGGILLM 262 (299)
Q Consensus 207 Vsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s-~~l~~g~~gtg~~ll~ 262 (299)
|+.+||-|.++.|++|+|-|.+ ||+|+.|-..-.|-+ |+||.||||||||||-
T Consensus 308 V~FkDVAG~deAK~El~E~V~f---LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLA 361 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKF---LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLA 361 (774)
T ss_pred CccccccCcHHHHHHHHHHHHH---hcCHHHHHHcCCcCcCceEEECCCCCcHHHHH
Confidence 9999999999999999999999 999999987666654 9999999999999995
No 259
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=4.4e-08 Score=89.03 Aligned_cols=159 Identities=13% Similarity=0.197 Sum_probs=86.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.|+||+|||||+++|++... .+.+.+++.++.... . ...+.. ...+.++..
T Consensus 40 vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~---~---~~~~~~---~i~~v~q~~ 110 (276)
T PRK14271 40 VSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR---D---VLEFRR---RVGMLFQRP 110 (276)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc---h---hHHHhh---heEEeccCC
Confidence 567789999999999999999999999999765 455667665543210 0 000000 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
........+.+..... ... .........++..+++.+++. .+......||+|++++++...++..-.+
T Consensus 111 ~l~~~tv~eni~~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~----- 183 (276)
T PRK14271 111 NPFPMSIMDNVLAGVR-AHK-LVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPE----- 183 (276)
T ss_pred ccCCccHHHHHHHHHH-hcc-CCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCC-----
Confidence 1111111222211000 000 000011223444555555553 2345567899999999987665543111
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+.....+-+.+.|.+.|++.+
T Consensus 184 ----------------lllLDEPt~~LD~~~~~~l~~~L~~~~ 210 (276)
T PRK14271 184 ----------------VLLLDEPTSALDPTTTEKIEEFIRSLA 210 (276)
T ss_pred ----------------EEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 244566667777778888888887763
No 260
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.64 E-value=3e-08 Score=87.09 Aligned_cols=161 Identities=17% Similarity=0.215 Sum_probs=88.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc--h--hhhhccccccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG--P--ELLTMWFGESEANVRDIFDKVTMENFRYAMGK 87 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~--~--~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~ 87 (299)
++|.+.+++.++|.|+||+|||||+++|++.+.+ +.+.+++ . ++... ....+..+.. ....+.++...
T Consensus 27 vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~----~~~~~~~~~~--~~i~~~~q~~~ 100 (224)
T TIGR02324 27 VSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA----SPREVLEVRR--KTIGYVSQFLR 100 (224)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhc----CHHHHHHHHh--cceEEEecccc
Confidence 5677899999999999999999999999998754 4455542 1 22111 0111111000 00011111111
Q ss_pred CCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-H-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 88 SSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-I-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRR 164 (299)
Q Consensus 88 ~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~ 164 (299)
... ....+.+.. . +...-.......+++..+++.+++.. + ......||+|+.|+++...++..-.
T Consensus 101 ~~~~~tv~e~l~~-~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p--------- 168 (224)
T TIGR02324 101 VIPRVSALEVVAE-P--LLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADY--------- 168 (224)
T ss_pred cCCCccHHHHHHH-H--HHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCC---------
Confidence 111 111111111 0 00000001223456666777777743 3 4456889999999998766554311
Q ss_pred HHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.|.+.|++++
T Consensus 169 ------------~llllDEPt~~LD~~~~~~l~~~l~~~~ 196 (224)
T TIGR02324 169 ------------PILLLDEPTASLDAANRQVVVELIAEAK 196 (224)
T ss_pred ------------CEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 1244667777777888888888888764
No 261
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=4.3e-08 Score=87.61 Aligned_cols=159 Identities=14% Similarity=0.231 Sum_probs=88.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||+|||||+++|++..+ .+.+.+++.++..... .....+. ...+.++..
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~~~~------~i~~v~q~~ 93 (250)
T PRK14245 22 ISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV--QVDELRK------NVGMVFQRP 93 (250)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc--cHHHHhh------heEEEecCC
Confidence 567789999999999999999999999998532 3667777765532100 0000100 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCc-cHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLE-GVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p-~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
........+.+... ....-...+ ...+++..+++.+++. .+......||+|+++++....++..-.+
T Consensus 94 ~~~~~tv~~nl~~~---~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~---- 166 (250)
T PRK14245 94 NPFPKSIFENVAYG---LRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPS---- 166 (250)
T ss_pred ccCcccHHHHHHHH---HHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCC----
Confidence 11111111111100 000000001 1234455566666552 3445668899999999987665543111
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|++.+
T Consensus 167 -----------------lllLDEPt~~LD~~~~~~l~~~l~~~~ 193 (250)
T PRK14245 167 -----------------VLLMDEPASALDPISTAKVEELIHELK 193 (250)
T ss_pred -----------------EEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 244666777777888888888888764
No 262
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.64 E-value=3.1e-08 Score=89.08 Aligned_cols=145 Identities=12% Similarity=0.157 Sum_probs=86.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|+||||||||||+++|++.+.+ +.+.+++..+. .++ ....+.++......
T Consensus 31 isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~---------~~~------~~i~~v~q~~~l~~~ 95 (257)
T PRK11247 31 LDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA---------EAR------EDTRLMFQDARLLPW 95 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH---------Hhh------CceEEEecCccCCCC
Confidence 5677889999999999999999999999998754 34444433221 000 00011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.. . . .....+++..+++.+++.. +.+....||||+.|++....++..-.+
T Consensus 96 ~tv~enl~~-~--~------~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~------------- 153 (257)
T PRK11247 96 KKVIDNVGL-G--L------KGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPG------------- 153 (257)
T ss_pred CcHHHHHHh-c--c------cchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 111121110 0 0 0112345667777788854 445668899999999887655443111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.+.+.|++.
T Consensus 154 --------lllLDEPt~~LD~~~~~~l~~~L~~~ 179 (257)
T PRK11247 154 --------LLLLDEPLGALDALTRIEMQDLIESL 179 (257)
T ss_pred --------EEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 24466777777888888888888765
No 263
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.64 E-value=1.6e-08 Score=90.58 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=87.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC------CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA------NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK 87 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~------~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~ 87 (299)
++|.+.+++.++|.|+||+|||||+++|++...+ +.+.+++.++... ......+ .+.++...
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~~~i----------~~v~q~~~ 89 (254)
T PRK10418 22 VSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRGRKI----------ATIMQNPR 89 (254)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccccceE----------EEEecCCc
Confidence 5677899999999999999999999999998754 5666766554210 0000001 11111110
Q ss_pred --CCch-hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH----HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 88 --SSPS-ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY----IAKVTNGFSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 88 --~~~~-~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~----LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
.... .....+... + . ........+++..+++.+++.. +......||+|+.|+++...++..-.+
T Consensus 90 ~~~~~~~~~~~~~~~~---~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~---- 160 (254)
T PRK10418 90 SAFNPLHTMHTHARET---C-L-ALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP---- 160 (254)
T ss_pred cccCccccHHHHHHHH---H-H-HcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC----
Confidence 0000 000111000 0 0 0111223356667777777743 456668899999999987665543111
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.|.+.|++.
T Consensus 161 -----------------lLlLDEPt~~LD~~~~~~l~~~L~~~ 186 (254)
T PRK10418 161 -----------------FIIADEPTTDLDVVAQARILDLLESI 186 (254)
T ss_pred -----------------EEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 24456666677777788888887765
No 264
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.64 E-value=3.2e-08 Score=88.89 Aligned_cols=161 Identities=15% Similarity=0.165 Sum_probs=88.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchh-----hhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPE-----LLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~-----l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.|+||+|||||+++|++.+.+ +.+.+++.+ +... ........... ...+.++..
T Consensus 25 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~----~~~~~~~~~~~--~i~~v~q~~ 98 (258)
T PRK11701 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL----SEAERRRLLRT--EWGFVHQHP 98 (258)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccC----CHHHHHHHhhc--ceEEEeeCc
Confidence 5677899999999999999999999999998654 556666654 3211 11111110000 001111111
Q ss_pred C--CCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 K--SSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~--~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
. ... ....+.+..-..... ........+++..+++.+++. .+......||+|++|+++...++..-.+
T Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~----- 171 (258)
T PRK11701 99 RDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPR----- 171 (258)
T ss_pred ccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCC-----
Confidence 0 000 000111110000000 000112344556677777773 4567778999999999887665543111
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.+.+.|++.
T Consensus 172 ----------------llllDEPt~~LD~~~~~~l~~~l~~~ 197 (258)
T PRK11701 172 ----------------LVFMDEPTGGLDVSVQARLLDLLRGL 197 (258)
T ss_pred ----------------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 24466666777777888888887765
No 265
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.63 E-value=1.8e-07 Score=78.65 Aligned_cols=132 Identities=13% Similarity=0.177 Sum_probs=77.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhcc--ccc----cHHHHHHHHHHHHHHHHhhhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMW--FGE----SEANVRDIFDKVTMENFRYAM 85 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~--~g~----~~~~i~~~f~~a~~~~~~~~~ 85 (299)
+++....+..|.|+|.+|+||||++|||.-.-. .+.|.+++.++.-+. .|. ..+.++.+... +....
T Consensus 25 vSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~-----L~mVF 99 (256)
T COG4598 25 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR-----LGMVF 99 (256)
T ss_pred eeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHH-----hhHhh
Confidence 566677899999999999999999999987544 466778887774321 111 22333322221 11111
Q ss_pred cCCCc--h-hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HHHHhcCCCCHHHHHHHHHHHHHH
Q psy13773 86 GKSSP--S-ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YIAKVTNGFSGADLTEICQRACKL 152 (299)
Q Consensus 86 ~~~~~--~-~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~LA~~t~glSggDl~~Lv~~A~~~ 152 (299)
+..+- . +..+.+.+.|-.... .+..+..+|++.++..+++. .-..++..+|||+.|++..+.++.
T Consensus 100 Q~FNLWsHmtvLeNViEaPvhVLg--~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLa 168 (256)
T COG4598 100 QHFNLWSHMTVLENVIEAPVHVLG--VSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALA 168 (256)
T ss_pred hhcchhHHHHHHHHHHhcchHhhc--CCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHh
Confidence 11111 1 111222222211100 12345667888999999994 455777889999999987655443
No 266
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=3e-08 Score=89.04 Aligned_cols=157 Identities=12% Similarity=0.261 Sum_probs=87.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.|+||+|||||+++|++... .+.+.+++.++.... .....++. ...+.++..
T Consensus 31 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~--~~~~~~~~------~i~~v~q~~ 102 (258)
T PRK14268 31 VSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD--VDVVELRK------NVGMVFQKP 102 (258)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc--chHHHHhh------hEEEEecCC
Confidence 567789999999999999999999999999764 455666665442110 00000100 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
..-.....+.+.. . . .....+ ...+++..+++.+++ ..+......||+|++|+++...++..-.+
T Consensus 103 ~~~~~tv~enl~~-~--~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~--- 174 (258)
T PRK14268 103 NPFPMSIYDNVAY-G--P--RIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPK--- 174 (258)
T ss_pred ccCcccHHHHHHH-H--H--HHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCC---
Confidence 1111111122210 0 0 000111 123345556665554 23455567899999999987665543221
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|++.+
T Consensus 175 ------------------llllDEPt~~LD~~~~~~l~~~l~~l~ 201 (258)
T PRK14268 175 ------------------IILFDEPTSALDPISTARIEDLIMNLK 201 (258)
T ss_pred ------------------EEEEeCCCcccCHHHHHHHHHHHHHHh
Confidence 244666777777888888888887763
No 267
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=2.3e-08 Score=92.72 Aligned_cols=163 Identities=10% Similarity=0.094 Sum_probs=90.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhccc---------cccHHHHHHHHHHHHHHHHh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWF---------GESEANVRDIFDKVTMENFR 82 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~---------g~~~~~i~~~f~~a~~~~~~ 82 (299)
++|.+.+++.++|+|+||||||||+++|++.+.+ +.+.+++.++...+. .........+. +...+.
T Consensus 45 vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ig~v 121 (320)
T PRK13631 45 ISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR---RRVSMV 121 (320)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHH---hcEEEE
Confidence 5677899999999999999999999999997754 667777655432100 00000011111 001112
Q ss_pred hhhcC--CCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773 83 YAMGK--SSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSI 158 (299)
Q Consensus 83 ~~~~~--~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~ 158 (299)
++... .-.....+.+..-+.... .......+|+..+++.+++. . +......||||++|+++...++..-.+
T Consensus 122 ~Q~~~~~l~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~-- 196 (320)
T PRK13631 122 FQFPEYQLFKDTIEKDIMFGPVALG---VKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPE-- 196 (320)
T ss_pred EECchhccccchHHHHHHhhHHhcC---CCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC--
Confidence 21110 001111222110000000 00112345667778888884 3 445568899999999987765544222
Q ss_pred HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.|.+.|.+.
T Consensus 197 -------------------iLLLDEPtsgLD~~~~~~l~~~L~~l 222 (320)
T PRK13631 197 -------------------ILIFDEPTAGLDPKGEHEMMQLILDA 222 (320)
T ss_pred -------------------EEEEECCccCCCHHHHHHHHHHHHHH
Confidence 23355666666777777777777654
No 268
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=2.7e-08 Score=89.10 Aligned_cols=160 Identities=9% Similarity=0.105 Sum_probs=89.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++... ..... ... ...+.++.......
T Consensus 24 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~---~~~--~i~~~~q~~~~~~~ 94 (255)
T PRK11300 24 VNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGL----PGHQI---ARM--GVVRTFQHVRLFRE 94 (255)
T ss_pred eeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCC----CHHHH---Hhc--CeEEeccCcccCCC
Confidence 5677889999999999999999999999998654 5566666544321 00000 000 00111111111111
Q ss_pred -hhhHHHhhcC----------ccch-hhcCC-CccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy13773 92 -ALRETIVEVP----------NITW-EDIGG-LEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQS 157 (299)
Q Consensus 92 -~~~~~l~~l~----------~~l~-~~~~r-~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~ 157 (299)
...+.+.... .... ..... .....+++..+++.+++.. +......||+|++|+++...++..-.+
T Consensus 95 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~- 173 (255)
T PRK11300 95 MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPE- 173 (255)
T ss_pred CcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCC-
Confidence 1112111100 0000 00000 0122345666777888854 456668899999999887665443221
Q ss_pred HHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 158 IETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.+.+.|.+.
T Consensus 174 --------------------llllDEPt~~LD~~~~~~l~~~L~~~ 199 (255)
T PRK11300 174 --------------------ILMLDEPAAGLNPKETKELDELIAEL 199 (255)
T ss_pred --------------------EEEEcCCccCCCHHHHHHHHHHHHHH
Confidence 24466667777778888888888765
No 269
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.63 E-value=1.1e-07 Score=94.77 Aligned_cols=152 Identities=15% Similarity=0.207 Sum_probs=86.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
.++.+++|+.++|.|++|+|||||++.|++...+ +.+.+++.++... ....++..+ .++++....-..
T Consensus 359 inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~----~~~~~~~~i------~~~~Q~~~lf~~ 428 (576)
T TIGR02204 359 LNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL----DPAELRARM------ALVPQDPVLFAA 428 (576)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhc----CHHHHHHhc------eEEccCCccccc
Confidence 4567899999999999999999999999998764 5677787665432 111122111 122221111112
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH------------HHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY------------IAKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~------------LA~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.- .+.....+++...++.+++.+ +......+||||.|+++...+...-..
T Consensus 429 Ti~~Ni~~---------~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~--- 496 (576)
T TIGR02204 429 SVMENIRY---------GRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAP--- 496 (576)
T ss_pred cHHHHHhc---------CCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCC---
Confidence 22222211 000001223333333333321 222334599999999987654432111
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
.+..+|+....++.+.+.+.+.|++..+
T Consensus 497 ------------------ililDEpts~lD~~~~~~i~~~l~~~~~ 524 (576)
T TIGR02204 497 ------------------ILLLDEATSALDAESEQLVQQALETLMK 524 (576)
T ss_pred ------------------eEEEeCcccccCHHHHHHHHHHHHHHhC
Confidence 2446677777788888888888887643
No 270
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.63 E-value=2.2e-08 Score=86.10 Aligned_cols=146 Identities=14% Similarity=0.110 Sum_probs=84.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~ 90 (299)
++|.+.+++.++|.|+||+|||||+++|++...+ +.+.+++.++... ....+ .+.++.... ..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~----~~~~~----------~~~~~~~~~~~~ 84 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI----AKPYC----------TYIGHNLGLKLE 84 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh----hhhhE----------EeccCCcCCCcc
Confidence 5778899999999999999999999999997653 5566666544211 00000 111111000 00
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+... . . ......+...+++.+++.. +.+....||+|+++++....++..-.
T Consensus 85 ~tv~~~l~~~-~---~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p-------------- 142 (195)
T PRK13541 85 MTVFENLKFW-S---E----IYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQS-------------- 142 (195)
T ss_pred CCHHHHHHHH-H---H----hcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCC--------------
Confidence 1111111100 0 0 0011234445556666644 44556789999999987665444311
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHh
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRF 202 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~ 202 (299)
..+..+|+....++.+.+.+.+.++.
T Consensus 143 -------~~lllDEP~~~LD~~~~~~l~~~l~~ 168 (195)
T PRK13541 143 -------DLWLLDEVETNLSKENRDLLNNLIVM 168 (195)
T ss_pred -------CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 12446667777778888888888864
No 271
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.62 E-value=1.7e-08 Score=89.61 Aligned_cols=155 Identities=14% Similarity=0.117 Sum_probs=87.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhh-hhcCC-C
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY-AMGKS-S 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~-~~~~~-~ 89 (299)
++|.+.+++.++|.|+||+|||||+++|++...+ +.+.+++.++... . ...+ ....+.. +.... .
T Consensus 40 vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~----~-~~~~------~~i~~~~~~~~~~~~ 108 (236)
T cd03267 40 ISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR----R-KKFL------RRIGVVFGQKTQLWW 108 (236)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc----c-hhhc------ccEEEEcCCccccCC
Confidence 5677889999999999999999999999997654 4555555432110 0 0000 0001111 10000 0
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.....+.+... ..+.. .......+++..+++.+++.. +......||+|+++++....++..-.
T Consensus 109 ~~tv~e~l~~~-~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p------------- 172 (236)
T cd03267 109 DLPVIDSFYLL-AAIYD--LPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEP------------- 172 (236)
T ss_pred CCcHHHHHHHH-HHHcC--CCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC-------------
Confidence 11111111100 00000 001122345556677777754 34556789999999988665444311
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
..+..+|+....++.+.+.|.+.|.+.
T Consensus 173 --------~llllDEPt~~LD~~~~~~l~~~l~~~ 199 (236)
T cd03267 173 --------EILFLDEPTIGLDVVAQENIRNFLKEY 199 (236)
T ss_pred --------CEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 124466777788888888899988876
No 272
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.62 E-value=2.6e-08 Score=89.38 Aligned_cols=165 Identities=12% Similarity=0.110 Sum_probs=93.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccc--c----ccHHHHHHHHHHHHHHHHhhhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWF--G----ESEANVRDIFDKVTMENFRYAM 85 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~--g----~~~~~i~~~f~~a~~~~~~~~~ 85 (299)
++|.+.+++.++|+|+||+|||||+++|++... .+.+.+++.++..... + ......+. +. +...+.++.
T Consensus 24 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~--~~i~~v~q~ 100 (257)
T PRK10619 24 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRL-LR--TRLTMVFQH 100 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHH-Hh--hceEEEecC
Confidence 577889999999999999999999999999875 3556667655421000 0 00000011 11 001121211
Q ss_pred cCCCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH--HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 86 GKSSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI--AKVTNGFSGADLTEICQRACKLAIRQSIETEI 162 (299)
Q Consensus 86 ~~~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L--A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~ 162 (299)
..... ....+.+......... ...+...+++..+++.+++... .+....||+|++++++...++..-.+
T Consensus 101 ~~l~~~~sv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~------ 172 (257)
T PRK10619 101 FNLWSHMTVLENVMEAPIQVLG--LSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPE------ 172 (257)
T ss_pred cccCCCCcHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCC------
Confidence 11111 1112222110000000 0112334566778888888543 46678999999999887654443111
Q ss_pred HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.+.+.|++.+
T Consensus 173 ---------------llllDEPt~~LD~~~~~~l~~~l~~l~ 199 (257)
T PRK10619 173 ---------------VLLFDEPTSALDPELVGEVLRIMQQLA 199 (257)
T ss_pred ---------------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 244667777778888888888887764
No 273
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.62 E-value=2.6e-08 Score=83.81 Aligned_cols=130 Identities=17% Similarity=0.194 Sum_probs=83.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+..+..+.++|.+|+|||||+|+|++...+ +.+.+++..+.-..+....+.+|.+|+.+.. ..++.
T Consensus 32 vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnt--------s~NPR 103 (267)
T COG4167 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNT--------SLNPR 103 (267)
T ss_pred eEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCcc--------ccChh
Confidence 6778889999999999999999999999997764 5677788777544444455667777764321 11111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH--HHHHHhcCCCCHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL--NYIAKVTNGFSGADLTEICQRACKL 152 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l--~~LA~~t~glSggDl~~Lv~~A~~~ 152 (299)
.....+.+.|-.+... ...+.+.+|+-..++.|++ +.-.-..+-++.++.|++|.+.++.
T Consensus 104 l~iGqiLd~PL~l~T~-~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALI 165 (267)
T COG4167 104 LRIGQILDFPLRLNTD-LEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALI 165 (267)
T ss_pred hhhhhHhcchhhhccc-CChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHh
Confidence 1111111112111110 1135566677777778887 4444566889999999999776554
No 274
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.62 E-value=1.9e-08 Score=88.50 Aligned_cols=158 Identities=10% Similarity=0.146 Sum_probs=83.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
+++.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++... .....+. ...+.++.......
T Consensus 33 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~~------~i~~~~q~~~l~~~ 102 (226)
T cd03248 33 VSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQY----EHKYLHS------KVSLVGQEPVLFAR 102 (226)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHc----CHHHHHh------hEEEEecccHHHhh
Confidence 4567899999999999999999999999998753 5566666554321 0000000 00111110000000
Q ss_pred hhhHHHhhcCccchhhcCCCccH--HHHHhhhcccC--CHH-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGV--KRELQELVQDV--DLN-YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER 166 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~--~~R~~~l~~~v--~l~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~ 166 (299)
...+.+......... ...... ..++..+++.+ ++. .+......||+|+.+++....++..-.
T Consensus 103 tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p----------- 169 (226)
T cd03248 103 SLQDNIAYGLQSCSF--ECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNP----------- 169 (226)
T ss_pred hHHHHhccccCCCCH--HHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC-----------
Confidence 111111100000000 000000 01122344444 453 345566889999999988665443311
Q ss_pred HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.|.+.|.+..
T Consensus 170 ----------~llllDEPt~~LD~~~~~~l~~~l~~~~ 197 (226)
T cd03248 170 ----------QVLILDEATSALDAESEQQVQQALYDWP 197 (226)
T ss_pred ----------CEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 1244667777777888888888887764
No 275
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.61 E-value=5.8e-08 Score=87.58 Aligned_cols=158 Identities=14% Similarity=0.232 Sum_probs=85.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.|+||+|||||+++|++... .+.+.+++.++..... ....++. ...+.++..
T Consensus 29 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~--~~~~~~~------~i~~v~q~~ 100 (264)
T PRK14243 29 VWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV--DPVEVRR------RIGMVFQKP 100 (264)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc--ChHHHhh------hEEEEccCC
Confidence 567789999999999999999999999998653 3566777655421100 0001100 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH----H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL----N-YIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l----~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
........+.+.. ..... .......+++..+++.+++ . .+......||+|+.|+++...++..-.+
T Consensus 101 ~~~~~tv~enl~~-~~~~~---~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~----- 171 (264)
T PRK14243 101 NPFPKSIYDNIAY-GARIN---GYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPE----- 171 (264)
T ss_pred ccccccHHHHHHh-hhhhc---CcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCC-----
Confidence 1111111122111 00000 0001222334444444443 2 2334557899999999987665543211
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++-+.+.|.+.|+++.
T Consensus 172 ----------------lllLDEPt~~LD~~~~~~l~~~L~~~~ 198 (264)
T PRK14243 172 ----------------VILMDEPCSALDPISTLRIEELMHELK 198 (264)
T ss_pred ----------------EEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 244566777777888888888887764
No 276
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.61 E-value=4.7e-08 Score=84.95 Aligned_cols=149 Identities=17% Similarity=0.205 Sum_probs=87.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~ 90 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++.. . . ++. ...+..+..... .
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-----~-~-~~~------~~~~~~~~~~~~~~ 87 (207)
T PRK13539 21 LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-----P-D-VAE------ACHYLGHRNAMKPA 87 (207)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-----h-h-hHh------hcEEecCCCcCCCC
Confidence 567789999999999999999999999999765 3555566544210 0 0 110 001111111110 1
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.... . .. ....+++..+++.+++..+. .....||+|+++++....++..-.
T Consensus 88 ~tv~~~l~~~~----~-~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p-------------- 146 (207)
T PRK13539 88 LTVAENLEFWA----A-FL--GGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNR-------------- 146 (207)
T ss_pred CcHHHHHHHHH----H-hc--CCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCC--------------
Confidence 11112221100 0 00 11134566777788886544 444689999999988655443311
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
..+..+|+....++.+.+.+.+.|++.
T Consensus 147 -------~llllDEPt~~LD~~~~~~l~~~l~~~ 173 (207)
T PRK13539 147 -------PIWILDEPTAALDAAAVALFAELIRAH 173 (207)
T ss_pred -------CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 124466777777888888888888765
No 277
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.61 E-value=4.1e-08 Score=88.96 Aligned_cols=160 Identities=15% Similarity=0.251 Sum_probs=87.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||+|||||+++|++... .+.+.+++.++.... .....++. ...+.++..
T Consensus 44 vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~--~~~~~~~~------~i~~v~q~~ 115 (272)
T PRK14236 44 ISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK--VDVAELRR------RVGMVFQRP 115 (272)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc--cCHHHHhc------cEEEEecCC
Confidence 567789999999999999999999999999754 466777766553210 00000000 001112111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
..-.....+.+.. .... ..........+++..+++.+++ ..+......+|+|++|+++...++..-.+
T Consensus 116 ~l~~~tv~enl~~-~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~----- 188 (272)
T PRK14236 116 NPFPKSIYENVVY-GLRL-QGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPE----- 188 (272)
T ss_pred ccCcccHHHHHHH-HHHh-cCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCC-----
Confidence 1111111222210 0000 0000001122344445555444 23455668899999999987665543111
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+...|.+.|.+.+
T Consensus 189 ----------------lllLDEPt~gLD~~~~~~l~~~L~~~~ 215 (272)
T PRK14236 189 ----------------VLLLDEPTSALDPISTLKIEELITELK 215 (272)
T ss_pred ----------------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 244666777777888888888887763
No 278
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=3.1e-08 Score=88.70 Aligned_cols=160 Identities=13% Similarity=0.231 Sum_probs=84.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||+|||||+++|++... .+.+.+++.++.... .. ...+.. ...+.++..
T Consensus 25 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~--~~---~~~~~~---~i~~~~q~~ 96 (253)
T PRK14261 25 ITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG--AD---VVALRR---KIGMVFQRP 96 (253)
T ss_pred eEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc--cc---hhhhhc---eEEEEecCC
Confidence 456789999999999999999999999998653 356667765543210 00 000000 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
..-.....+.+..... ... .........++..+++.+++ ..+......||+|+.+++....++..-.+
T Consensus 97 ~~~~~tv~eni~~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~----- 169 (253)
T PRK14261 97 NPFPKSIYENVAYGPR-IHG-EKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPE----- 169 (253)
T ss_pred ccCcccHHHHHHhhHH-hcC-CCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCC-----
Confidence 1111111122110000 000 00001122344444554443 23455667899999999886655443211
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|.+.+
T Consensus 170 ----------------lllLDEP~~gLD~~~~~~l~~~l~~~~ 196 (253)
T PRK14261 170 ----------------VILMDEPCSALDPIATAKIEDLIEDLK 196 (253)
T ss_pred ----------------EEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 244566666677777777777777653
No 279
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=5.6e-08 Score=88.21 Aligned_cols=158 Identities=13% Similarity=0.250 Sum_probs=85.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||+|||||+++|++... .+.+.+++.++..... ....++. ...+.++..
T Consensus 39 vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~--~~~~~~~------~i~~v~q~~ 110 (274)
T PRK14265 39 VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI--NSVKLRR------QVGMVFQRP 110 (274)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc--hhHHHhh------cEEEEccCC
Confidence 567789999999999999999999999998753 4566677655532100 0000000 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH----H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL----N-YIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l----~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
........+.+..... .. ...+...++....++.+++ . .+......||+|++++++...++..-.
T Consensus 111 ~l~~~tv~~nl~~~~~-~~---~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p------ 180 (274)
T PRK14265 111 NPFPKSIYENIAFAPR-AN---GYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKP------ 180 (274)
T ss_pred ccccccHHHHHHhHHH-hc---CchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCC------
Confidence 1111111111110000 00 0001112223333343333 2 234555789999999998765553211
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.|.+.|.+.+
T Consensus 181 ---------------~lllLDEPt~~LD~~~~~~l~~~L~~~~ 208 (274)
T PRK14265 181 ---------------DVLLMDEPCSALDPISTRQVEELCLELK 208 (274)
T ss_pred ---------------CEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 1244667777888889999999998774
No 280
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.60 E-value=4.6e-08 Score=84.50 Aligned_cols=150 Identities=14% Similarity=0.086 Sum_probs=86.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
+++.+.+++.++|.||||||||||+++|++...+ +.+.+++.++... . . . +. +...+.++......
T Consensus 20 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~----~-~---~-~~--~~i~~~~q~~~~~~~ 88 (200)
T PRK13540 20 ISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD----L-C---T-YQ--KQLCFVGHRSGINPY 88 (200)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC----H-H---H-HH--hheEEeccccccCcC
Confidence 4567889999999999999999999999997653 5566666554210 0 0 0 11 00011221111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.... . ......++..+++.+++..+ ......||+|+.++++...++..-.+
T Consensus 89 ~tv~~~~~~~~---~-----~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~------------- 147 (200)
T PRK13540 89 LTLRENCLYDI---H-----FSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAK------------- 147 (200)
T ss_pred CCHHHHHHHHH---h-----cCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCC-------------
Confidence 11122221100 0 01112355666676677444 34447899999999886654433111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.|.++|++.
T Consensus 148 --------~lilDEP~~~LD~~~~~~l~~~l~~~ 173 (200)
T PRK13540 148 --------LWLLDEPLVALDELSLLTIITKIQEH 173 (200)
T ss_pred --------EEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 24456666777777888888888765
No 281
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.60 E-value=3e-08 Score=87.78 Aligned_cols=44 Identities=27% Similarity=0.411 Sum_probs=36.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l 57 (299)
++|.+.+++.++|.|+||+|||||+++|++...+ +.+.+++.++
T Consensus 21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 66 (237)
T cd03252 21 ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDL 66 (237)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeeh
Confidence 5677899999999999999999999999998753 5566666554
No 282
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=5.2e-08 Score=88.05 Aligned_cols=160 Identities=15% Similarity=0.230 Sum_probs=86.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh-------cCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-------QANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l-------~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+|+.++|.|+||+|||||+++|++.. ..+.+.+++.++..... ....++. ...+.++..
T Consensus 40 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~--~~~~~~~------~i~~v~q~~ 111 (268)
T PRK14248 40 ISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI--NVVNLRR------EIGMVFQKP 111 (268)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc--cHHHHhc------cEEEEecCC
Confidence 46778999999999999999999999999964 24666777655432100 0000000 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
..-.....+.+..... ... ........+++...++.+++ ..+.+....||+|+.|+++...++..-.
T Consensus 112 ~~~~~tv~enl~~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p------ 183 (268)
T PRK14248 112 NPFPKSIYNNITHALK-YAG-ERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKP------ 183 (268)
T ss_pred ccCcccHHHHHHHHHH-hcC-CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCC------
Confidence 1111111111110000 000 00001112334444444443 2345666889999999998766554311
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.+.+.|++..
T Consensus 184 ---------------~lllLDEPt~~LD~~~~~~l~~~l~~~~ 211 (268)
T PRK14248 184 ---------------AVLLLDEPASALDPISNAKIEELITELK 211 (268)
T ss_pred ---------------CEEEEcCCCcccCHHHHHHHHHHHHHHh
Confidence 1244667777777888888888887763
No 283
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.60 E-value=9.8e-08 Score=94.32 Aligned_cols=151 Identities=19% Similarity=0.247 Sum_probs=86.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
.++.+++|+.++|+||+|||||||++.|++...+ +.+.+++.++... ....++..+ .+.++....-..
T Consensus 341 i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~----~~~~lr~~i------~~v~Q~~~lf~~ 410 (529)
T TIGR02857 341 VSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADA----DADSWRDQI------AWVPQHPFLFAG 410 (529)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhC----CHHHHHhhe------EEEcCCCcccCc
Confidence 4567899999999999999999999999997764 5677787766432 111122111 111211111112
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----------H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----------N-YIAKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----------~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.-. .....+++....++.+++ + .+......+|||+.|+++...++..-.
T Consensus 411 ti~~Ni~~~---------~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~---- 477 (529)
T TIGR02857 411 TIAENIRLA---------RPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA---- 477 (529)
T ss_pred CHHHHHhcc---------CCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC----
Confidence 222222110 000011222222222222 1 233445679999999988765443211
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.-+..+|+....++-+.+.+.+++.+..
T Consensus 478 -----------------~ililDE~ts~lD~~~~~~i~~~l~~~~ 505 (529)
T TIGR02857 478 -----------------PLLLLDEPTAHLDAETEALVTEALRALA 505 (529)
T ss_pred -----------------CEEEEeCcccccCHHHHHHHHHHHHHhc
Confidence 1244667778888889999999998864
No 284
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=6.1e-08 Score=86.55 Aligned_cols=158 Identities=15% Similarity=0.228 Sum_probs=85.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.|+||+|||||+++|++... .+.+.+++.++... ......+. ....+.++..
T Consensus 22 i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~-----~~~~~~~~---~~i~~~~q~~ 93 (250)
T PRK14262 22 VTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDP-----QLDVTEYR---KKVGMVFQKP 93 (250)
T ss_pred eeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc-----hhhHHHhh---hhEEEEecCC
Confidence 567889999999999999999999999998654 35666776544321 00000000 0011222111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
........+.+... ... ....+ ...+++..+++.+++. .+......||+|++++++...++..-.+
T Consensus 94 ~~~~~tv~e~l~~~---~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~--- 166 (250)
T PRK14262 94 TPFPMSIYDNVAFG---PRI-HGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPE--- 166 (250)
T ss_pred ccCcccHHHHHHHH---HHH-cCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCC---
Confidence 11111111222110 000 00001 1223344445555441 2445667899999999887654443111
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+...|.+.|++..
T Consensus 167 ------------------llllDEP~~~LD~~~~~~l~~~l~~~~ 193 (250)
T PRK14262 167 ------------------VILLDEPTSALDPIATQRIEKLLEELS 193 (250)
T ss_pred ------------------EEEEeCCccccCHHHHHHHHHHHHHHh
Confidence 244566667777778888888887653
No 285
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=7.8e-08 Score=85.85 Aligned_cols=160 Identities=12% Similarity=0.245 Sum_probs=87.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||+|||||+++|++... .+.+.+++.++..... . ...+.. ...+.++..
T Consensus 22 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~--~---~~~~~~---~i~~~~q~~ 93 (250)
T PRK14266 22 VNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV--D---VVELRK---KVGMVFQKP 93 (250)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc--c---HHHHhh---heEEEecCC
Confidence 467788999999999999999999999998643 3567777665432100 0 001100 011222111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH----H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL----N-YIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l----~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
..-.....+.+..... ... ........+++..+++.+++ . .+......+|+|++++++...++..-.+
T Consensus 94 ~~~~~t~~~nl~~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~----- 166 (250)
T PRK14266 94 NPFPKSIFDNVAYGLR-IHG-EDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPE----- 166 (250)
T ss_pred ccCcchHHHHHHhHHh-hcC-CCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCC-----
Confidence 1111111122211000 000 00001223455555665554 2 2334457899999999987665543221
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+...+.+.|.+.+
T Consensus 167 ----------------llllDEP~~gLD~~~~~~l~~~l~~~~ 193 (250)
T PRK14266 167 ----------------VILMDEPCSALDPISTTKIEDLIHKLK 193 (250)
T ss_pred ----------------EEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 244566666777778888888887764
No 286
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=6.8e-08 Score=88.28 Aligned_cols=161 Identities=9% Similarity=0.094 Sum_probs=87.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~ 89 (299)
++|.+.+++.++|.||||||||||+++|++.+.+ +.+.+++.++.... . .......+.. ...+.++... ..
T Consensus 30 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~-~-~~~~~~~~~~---~i~~v~q~~~~~~~ 104 (289)
T PRK13645 30 TSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANL-K-KIKEVKRLRK---EIGLVFQFPEYQLF 104 (289)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccc-c-ccccHHHHhc---cEEEEEeCcchhhh
Confidence 5677899999999999999999999999997754 55666665442100 0 0000000000 0011111100 00
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
.....+.+. +...... .......+++..+++.+++ .. +......||+|++|++....++..-.+
T Consensus 105 ~~tv~enl~-~~~~~~~--~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~----------- 170 (289)
T PRK13645 105 QETIEKDIA-FGPVNLG--ENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGN----------- 170 (289)
T ss_pred hhHHHHHHH-HHHHHcC--CCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCC-----------
Confidence 011111111 0000000 0011223455566777777 33 445568899999999987665543221
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|.+.
T Consensus 171 ----------lLlLDEPt~~LD~~~~~~l~~~l~~~ 196 (289)
T PRK13645 171 ----------TLVLDEPTGGLDPKGEEDFINLFERL 196 (289)
T ss_pred ----------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 24466677777778888888877765
No 287
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=6e-08 Score=87.42 Aligned_cols=158 Identities=12% Similarity=0.147 Sum_probs=88.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.|+||+|||||+++|++.+. .+.+.+++.++..... ....++. ...+.++..
T Consensus 27 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~--~~~~~~~------~i~~v~q~~ 98 (261)
T PRK14263 27 SHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV--DPVVVRR------YIGMVFQQP 98 (261)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccccc--chHhhhh------ceEEEecCC
Confidence 567889999999999999999999999999864 4566777665532100 0001110 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-----YIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
..-.....+.+.. ..... ...++...++..+++.+++. .+......||+|+.|+++...++..-.
T Consensus 99 ~~~~~tv~enl~~-~~~~~---~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p------ 168 (261)
T PRK14263 99 NPFSMSIFDNVAF-GLRLN---RYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEP------ 168 (261)
T ss_pred ccccccHHHHHHH-HHhhc---CchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCC------
Confidence 1101111111110 00000 00122234555666666552 223445679999999998766554311
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+++....++.+.+.|.+.|++.+
T Consensus 169 ---------------~llllDEPtsgLD~~~~~~l~~~l~~~~ 196 (261)
T PRK14263 169 ---------------EVLLLDEPCSALDPIATRRVEELMVELK 196 (261)
T ss_pred ---------------CEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 1244667777778888889988888774
No 288
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=4.9e-08 Score=90.89 Aligned_cols=157 Identities=15% Similarity=0.274 Sum_probs=87.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+|+.++|+|++|||||||+++|++... .+.+.+++.++...... ...++. ...+.++..
T Consensus 101 is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~--~~~lr~------~i~~v~q~~ 172 (329)
T PRK14257 101 LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS--SLELRT------RIGMVFQKP 172 (329)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc--hHhhhc------cEEEEecCC
Confidence 567789999999999999999999999999764 56777887765321000 000110 011122111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccH---HHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGV---KRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSI 158 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~---~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~ 158 (299)
..-....++.+..-+. .....+. .+++..+++.+.+ ..+......||||++|+++...++..-.+
T Consensus 173 ~~~~~ti~eNi~~~~~-----~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~-- 245 (329)
T PRK14257 173 TPFEMSIFDNVAYGPR-----NNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPE-- 245 (329)
T ss_pred ccCCCcHHHHHHhHHH-----hcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCC--
Confidence 1111112222210000 0001111 1122333333332 34566778899999999997665543221
Q ss_pred HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+++...+++.+...|.+.|.+..
T Consensus 246 -------------------IlLLDEPts~LD~~~~~~i~~~i~~l~ 272 (329)
T PRK14257 246 -------------------VLLMDEPTSALDPIATAKIEELILELK 272 (329)
T ss_pred -------------------EEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 244667777777888888888888765
No 289
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=6e-08 Score=87.75 Aligned_cols=157 Identities=13% Similarity=0.242 Sum_probs=86.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++..... ....++ . ...+.++..
T Consensus 32 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~--~~~~~~---~---~i~~v~q~~ 103 (269)
T PRK14259 32 VFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV--DPVEVR---R---RIGMVFQQP 103 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC--CHHHHh---h---ceEEEccCC
Confidence 467789999999999999999999999999753 3556666655421000 000111 0 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCC-ccHHHHHhhhcccCCH----H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGL-EGVKRELQELVQDVDL----N-YIAKVTNGFSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~-p~~~~R~~~l~~~v~l----~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
........+.+.. .... ... ....+++..+++.+++ . .+......||+|++|+++...++..-.
T Consensus 104 ~l~~~tv~enl~~-~~~~----~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p----- 173 (269)
T PRK14259 104 NPFPKSIYENIAF-GARI----NGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEP----- 173 (269)
T ss_pred ccchhhHHHHHhh-hhhh----cCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCC-----
Confidence 1111111222211 0000 001 1123344444444443 2 234556789999999988765444311
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.|.+.|++.+
T Consensus 174 ----------------~lllLDEPt~gLD~~~~~~l~~~l~~~~ 201 (269)
T PRK14259 174 ----------------EVILMDEPCSALDPISTLKIEETMHELK 201 (269)
T ss_pred ----------------CEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 1245667777778888899999988774
No 290
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.59 E-value=5.1e-08 Score=85.57 Aligned_cols=149 Identities=17% Similarity=0.133 Sum_probs=87.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||+|||||+++|++.+.+ +.+.+++.++... . . +...+.++......
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~----~---~-------~~~~~~~q~~~~~~~ 84 (223)
T TIGR03740 19 ISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK----D---L-------HKIGSLIESPPLYEN 84 (223)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc----c---c-------ccEEEEcCCCCcccc
Confidence 4677889999999999999999999999997653 4455655433210 0 0 00011111111110
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+... . ..... ...++..+++.+++.. +......||+|+.+++....++..-.+
T Consensus 85 ~t~~~~~~~~-~----~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~------------- 144 (223)
T TIGR03740 85 LTARENLKVH-T----TLLGL--PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPK------------- 144 (223)
T ss_pred CCHHHHHHHH-H----HHcCC--CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 1111111100 0 00011 1345556677777754 445568899999999877654443111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+++....++-+.+.|.+.|.+.+
T Consensus 145 --------llllDEP~~~LD~~~~~~l~~~L~~~~ 171 (223)
T TIGR03740 145 --------LLILDEPTNGLDPIGIQELRELIRSFP 171 (223)
T ss_pred --------EEEECCCccCCCHHHHHHHHHHHHHHH
Confidence 244667777777888888888887763
No 291
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.58 E-value=4.6e-08 Score=96.73 Aligned_cols=162 Identities=12% Similarity=0.148 Sum_probs=92.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CC-C
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KS-S 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~-~ 89 (299)
++|.+.+++.++|+||||||||||+|+|++.+. .+.+.+++.++... ....+.. +. ....+.++.. .. .
T Consensus 305 isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~----~~~~~~~-~~--~~i~~v~q~~~~~l~~ 377 (529)
T PRK15134 305 ISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNL----NRRQLLP-VR--HRIQVVFQDPNSSLNP 377 (529)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEcccc----chhhHHH-hh--hceEEEEeCchhhcCC
Confidence 577889999999999999999999999999763 45566666554321 1111111 00 0001111111 00 0
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
.....+.+.. ............+..+++..+++.+++. . +.+....||||++|+++...++..-.
T Consensus 378 ~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p------------ 444 (529)
T PRK15134 378 RLNVLQIIEE-GLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKP------------ 444 (529)
T ss_pred cccHHHHHHH-HHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCC------------
Confidence 1111122211 0000000000122345667778888884 3 45566899999999998776554311
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.+.+.|++++
T Consensus 445 ---------~llllDEPt~~LD~~~~~~l~~~l~~~~ 472 (529)
T PRK15134 445 ---------SLIILDEPTSSLDKTVQAQILALLKSLQ 472 (529)
T ss_pred ---------CEEEeeCCccccCHHHHHHHHHHHHHHH
Confidence 1245667777888888888988888763
No 292
>PLN03211 ABC transporter G-25; Provisional
Probab=98.58 E-value=3.9e-08 Score=99.52 Aligned_cols=154 Identities=15% Similarity=0.138 Sum_probs=88.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC----CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~----~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~ 89 (299)
+++.+.+|+.++|.||||+|||||+++|++.... +.+.+++.++... .++ ...+..+.....
T Consensus 87 vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~-----------~~~---~i~yv~Q~~~l~ 152 (659)
T PLN03211 87 VTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQ-----------ILK---RTGFVTQDDILY 152 (659)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchh-----------hcc---ceEEECcccccC
Confidence 4566899999999999999999999999997643 5566666543210 000 001111111111
Q ss_pred c-hhhhHHHhhcCccch-hhcCCCccHHHHHhhhcccCCHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 P-SALRETIVEVPNITW-EDIGGLEGVKRELQELVQDVDLNYIAK------VTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 90 ~-~~~~~~l~~l~~~l~-~~~~r~p~~~~R~~~l~~~v~l~~LA~------~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
. ...++.+.- ...+. +......+..++++.+++.+++...+. ...++|||++|++....++..-.+
T Consensus 153 ~~lTV~E~l~~-~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~----- 226 (659)
T PLN03211 153 PHLTVRETLVF-CSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS----- 226 (659)
T ss_pred CcCCHHHHHHH-HHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCC-----
Confidence 1 122222211 00000 000001123456677888888866542 346899999999987765544221
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....+..+..++.+.|++.
T Consensus 227 ----------------iLlLDEPtsgLD~~~~~~l~~~L~~l 252 (659)
T PLN03211 227 ----------------LLILDEPTSGLDATAAYRLVLTLGSL 252 (659)
T ss_pred ----------------EEEEeCCCCCcCHHHHHHHHHHHHHH
Confidence 23455666666777777777777765
No 293
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=4.3e-08 Score=86.86 Aligned_cols=156 Identities=10% Similarity=0.126 Sum_probs=85.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||+|||||+++|++... .+.+.+++.++..... ....+. ...+.++....-.
T Consensus 24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~---~~~~~~------~i~~~~q~~~~~~~ 94 (237)
T PRK11614 24 VSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQT---AKIMRE------AVAIVPEGRRVFSR 94 (237)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCH---HHHHHh------CEEEeccCcccCCC
Confidence 567789999999999999999999999999765 4556666655422100 000000 0011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccC-CHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDV-DLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v-~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
....+.+.. ... ........+++..+++.+ .+.. .......||+|+.+++....++..-.+
T Consensus 95 ~tv~~~l~~-~~~----~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~------------ 157 (237)
T PRK11614 95 MTVEENLAM-GGF----FAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPR------------ 157 (237)
T ss_pred CcHHHHHHH-hhh----ccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCC------------
Confidence 111121111 000 000111223344444544 3533 345557899999999887655443221
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|++.+
T Consensus 158 ---------illlDEPt~~LD~~~~~~l~~~l~~~~ 184 (237)
T PRK11614 158 ---------LLLLDEPSLGLAPIIIQQIFDTIEQLR 184 (237)
T ss_pred ---------EEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 244566667777778888888887763
No 294
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=6.2e-08 Score=86.61 Aligned_cols=157 Identities=13% Similarity=0.251 Sum_probs=86.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-------CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-------~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++... .......+. ...+.++..
T Consensus 23 ~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~~~------~i~~v~q~~ 94 (251)
T PRK14249 23 INMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSP--NLDVVNLRK------RVGMVFQQP 94 (251)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccc--ccChHHhhc------eEEEEecCC
Confidence 5667889999999999999999999999998754 5666776554321 000000100 001222111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCC--c-cHHHHHhhhcccCCH----H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGL--E-GVKRELQELVQDVDL----N-YIAKVTNGFSGADLTEICQRACKLAIRQSI 158 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~--p-~~~~R~~~l~~~v~l----~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~ 158 (299)
..-.....+.+.. . ...... . ...+++..+++.+++ . .+......+|+|++|+++...++..-.+
T Consensus 95 ~~~~~tv~enl~~-~----~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~-- 167 (251)
T PRK14249 95 NPFPKSIFDNVAF-G----PRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPE-- 167 (251)
T ss_pred ccCcCcHHHHHhh-H----HHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCC--
Confidence 1111111122210 0 000000 1 122334444444443 2 2445667899999999887765543111
Q ss_pred HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|++.+
T Consensus 168 -------------------lllLDEPt~~LD~~~~~~l~~~l~~~~ 194 (251)
T PRK14249 168 -------------------VILMDEPCSALDPVSTMRIEELMQELK 194 (251)
T ss_pred -------------------EEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 244666777777788888888887763
No 295
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.57 E-value=9.6e-08 Score=96.84 Aligned_cols=150 Identities=17% Similarity=0.192 Sum_probs=87.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
.++.+++++.++|+|+||||||||+|.|.+...+ +.+.+|+.++... ....+|.-.. ...+....-..
T Consensus 492 isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i----~~~~lR~~ig------~V~Q~~~Lf~g 561 (709)
T COG2274 492 LSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI----DLASLRRQVG------YVLQDPFLFSG 561 (709)
T ss_pred eeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhc----CHHHHHhhee------EEcccchhhcC
Confidence 4567899999999999999999999999997764 6788898887543 1122221100 00000000111
Q ss_pred hhhHHHhhcCccchhhcCCCccH-HHHHhhhcccC-----------CH-HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGV-KRELQELVQDV-----------DL-NYIAKVTNGFSGADLTEICQRACKLAIRQSI 158 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~-~~R~~~l~~~v-----------~l-~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~ 158 (299)
+.++.+.. ..|+. .+++...+... ++ ..+...-.++||||.|++..+.+...-.
T Consensus 562 SI~eNi~l----------~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P--- 628 (709)
T COG2274 562 SIRENIAL----------GNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP--- 628 (709)
T ss_pred cHHHHHhc----------CCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC---
Confidence 11111111 01111 12222222211 23 2345666789999999987654332211
Q ss_pred HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.-+..+|+.+..++.|..-+.+.|.+..
T Consensus 629 ------------------~ILlLDEaTSaLD~~sE~~I~~~L~~~~ 656 (709)
T COG2274 629 ------------------KILLLDEATSALDPETEAIILQNLLQIL 656 (709)
T ss_pred ------------------CEEEEeCcccccCHhHHHHHHHHHHHHh
Confidence 1244677888888899999999888876
No 296
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=2.6e-08 Score=97.93 Aligned_cols=159 Identities=14% Similarity=0.088 Sum_probs=85.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc----CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~----~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~ 89 (299)
++|.+.+++.++|+||||||||||+|+|++.+. .+.+.+++.++... ... .... ....+.++.....
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~----~~~---~~~~--~~i~~v~q~~~~~ 94 (506)
T PRK13549 24 VSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQAS----NIR---DTER--AGIAIIHQELALV 94 (506)
T ss_pred eeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCC----CHH---HHHH--CCeEEEEeccccC
Confidence 567789999999999999999999999999775 45666776655321 100 0000 0001111111110
Q ss_pred c-hhhhHHHhhcCccchh-hcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 P-SALRETIVEVPNITWE-DIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER 166 (299)
Q Consensus 90 ~-~~~~~~l~~l~~~l~~-~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~ 166 (299)
. ....+.+. +...... .........+++..+++.+++.. +.+....||||++|++....++..-.+
T Consensus 95 ~~~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~---------- 163 (506)
T PRK13549 95 KELSVLENIF-LGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQAR---------- 163 (506)
T ss_pred CCCcHHHHhh-hcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC----------
Confidence 0 11112211 1100000 00001123456667778888754 345568899999999988766543221
Q ss_pred HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+...+.+.|.+.
T Consensus 164 -----------lllLDEPt~~LD~~~~~~l~~~l~~l 189 (506)
T PRK13549 164 -----------LLILDEPTASLTESETAVLLDIIRDL 189 (506)
T ss_pred -----------EEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 13344555555555566666555554
No 297
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.57 E-value=6.7e-08 Score=84.82 Aligned_cols=158 Identities=15% Similarity=0.197 Sum_probs=87.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHH--HHhhhhcCCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTME--NFRYAMGKSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--~~~~~~~~~~ 89 (299)
+++.+.+++.+.|+||||+|||||++.++++..+ +.+.+.+..+ |..+-. .++.+..... .+......
T Consensus 50 isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~-----G~~~~~-~elrk~IG~vS~~L~~~~~~-- 121 (257)
T COG1119 50 LSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRF-----GKGETI-FELRKRIGLVSSELHERFRV-- 121 (257)
T ss_pred cceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeec-----cCCcch-HHHHHHhCccCHHHHhhccc--
Confidence 4567899999999999999999999999998765 3343433322 211111 1111111000 00000000
Q ss_pred chhhhHHHhhcCccchhhcCC-----CccHHHHHhhhcccCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGG-----LEGVKRELQELVQDVDLNYIAKVT-NGFSGADLTEICQRACKLAIRQSIETEIR 163 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r-----~p~~~~R~~~l~~~v~l~~LA~~t-~glSggDl~~Lv~~A~~~a~~r~~~~~~~ 163 (299)
....++. +.......+.. -.....++..+++.+++..++.++ ..+|-||++++....++..-.+.
T Consensus 122 ~~~v~dv---VlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~L------ 192 (257)
T COG1119 122 RETVRDV---VLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPEL------ 192 (257)
T ss_pred cccccee---eeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCE------
Confidence 0000000 00000111111 123445666889999999899877 77999999998876655543322
Q ss_pred HHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 164 REREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
+..+|+....+.+.++.|.+-|.+.
T Consensus 193 ---------------LiLDEP~~GLDl~~re~ll~~l~~~ 217 (257)
T COG1119 193 ---------------LILDEPAQGLDLIAREQLLNRLEEL 217 (257)
T ss_pred ---------------EEecCccccCChHHHHHHHHHHHHH
Confidence 3355555555666666666666554
No 298
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.57 E-value=5.5e-08 Score=82.11 Aligned_cols=44 Identities=25% Similarity=0.591 Sum_probs=35.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l 57 (299)
+++.+.+++.++|.||+|+|||||+++|++...+ +.+.+++.++
T Consensus 21 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~ 66 (173)
T cd03246 21 VSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADI 66 (173)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEc
Confidence 4567889999999999999999999999997654 4566665544
No 299
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.57 E-value=6.1e-08 Score=82.46 Aligned_cols=150 Identities=19% Similarity=0.214 Sum_probs=86.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
+++.+.+++.+.+.||||||||||++.+|+...+ +.+.+++..+... |. ++ .-+|+... +.+ -
T Consensus 24 vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gP--ga-er--gvVFQ~~~---LlP-------W 88 (259)
T COG4525 24 VSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP--GA-ER--GVVFQNEA---LLP-------W 88 (259)
T ss_pred cceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCC--Cc-cc--eeEeccCc---cch-------h
Confidence 5678899999999999999999999999997764 5566666555432 10 11 11222110 000 0
Q ss_pred hhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
...+..+...+ .+...+ .+.+++...+..|++.... ++.-.+|||+.|++-.+.++.+-.+.
T Consensus 89 --l~~~dNvafgL--~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~----------- 153 (259)
T COG4525 89 --LNVIDNVAFGL--QLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL----------- 153 (259)
T ss_pred --hHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce-----------
Confidence 00000000000 011122 2334455777788886655 45578999999999877666543322
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
+..+++-...+.+|.+.+.+-|-+.
T Consensus 154 ----------LlLDEPfgAlDa~tRe~mQelLldl 178 (259)
T COG4525 154 ----------LLLDEPFGALDALTREQMQELLLDL 178 (259)
T ss_pred ----------EeecCchhhHHHHHHHHHHHHHHHH
Confidence 2244444556677777777766544
No 300
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.57 E-value=1.1e-07 Score=84.21 Aligned_cols=44 Identities=23% Similarity=0.516 Sum_probs=37.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l 57 (299)
++|.+.+++.++|.|+||||||||+++|++.+. .+.+.+++.++
T Consensus 22 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 67 (238)
T cd03249 22 LSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDI 67 (238)
T ss_pred eEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEeh
Confidence 567889999999999999999999999999865 45566666554
No 301
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.57 E-value=1.4e-07 Score=102.93 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=30.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
++|.+++++.++|+||+||||||+++.|.+...+
T Consensus 1187 lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1187 LTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 5677899999999999999999999999997664
No 302
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.57 E-value=3e-08 Score=98.82 Aligned_cols=47 Identities=26% Similarity=0.511 Sum_probs=40.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTM 60 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~ 60 (299)
++|.+++++.++|+||+||||||+++.|++...+ +.+.+|+.++...
T Consensus 348 is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i 396 (567)
T COG1132 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI 396 (567)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhc
Confidence 5677899999999999999999999999997765 6677888887654
No 303
>CHL00176 ftsH cell division protein; Validated
Probab=98.57 E-value=1.4e-08 Score=101.96 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=49.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.+.++|+||+|++++|+++.+.+.+ +++|+.|.. |.+...|+|||||||||||+|.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~---lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF---LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH---HhCHHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 4569999999999999999999988 999998754 5566779999999999999884
No 304
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.56 E-value=9e-08 Score=84.17 Aligned_cols=153 Identities=12% Similarity=0.046 Sum_probs=86.2
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC---Cc
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS---SP 90 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~---~~ 90 (299)
|.+.+++.++|.|+||||||||+++|++... .+.+.+++.++.. . . +...+.++.... ..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---------~----~--~~i~~v~q~~~~~~~~~ 65 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK---------G----W--RHIGYVPQRHEFAWDFP 65 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH---------h----h--CcEEEecccccccCCCC
Confidence 4578999999999999999999999999765 3556666544310 0 0 000111111110 00
Q ss_pred hhhhHHHhhcCccchhhcCCCc-cHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGLE-GVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p-~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
....+.+..........+.... ...+++..+++.+++.. +......||+|++|+++...++..-.+
T Consensus 66 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~------------ 133 (223)
T TIGR03771 66 ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPS------------ 133 (223)
T ss_pred ccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC------------
Confidence 1111221110000000000111 22345667777777754 445567899999999887665443211
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|++.+
T Consensus 134 ---------llilDEP~~~LD~~~~~~l~~~l~~~~ 160 (223)
T TIGR03771 134 ---------VLLLDEPFTGLDMPTQELLTELFIELA 160 (223)
T ss_pred ---------EEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 244666777777888888888887653
No 305
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.56 E-value=5.3e-08 Score=97.50 Aligned_cols=151 Identities=15% Similarity=0.238 Sum_probs=86.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
+++.+++++.++|+|++|||||||++.|++...+ +.+.+++.++... ....++..+ .+.++....-..
T Consensus 354 inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~----~~~~~r~~i------~~v~Q~~~lf~~ 423 (588)
T PRK13657 354 VSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTV----TRASLRRNI------AVVFQDAGLFNR 423 (588)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhC----CHHHHHhhe------EEEecCcccccc
Confidence 4567789999999999999999999999997764 5677888766542 111122111 111111111112
Q ss_pred hhhHHHhhcCccchhhcCCCcc-HHHHHhhhcccCC-----------HHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEG-VKRELQELVQDVD-----------LNY-IAKVTNGFSGADLTEICQRACKLAIRQSI 158 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~-~~~R~~~l~~~v~-----------l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~ 158 (299)
+.++.+.-. + |+ .++++...++.++ ++. +......+||||+|+++...++..-.+
T Consensus 424 Ti~~Ni~~~---------~-~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~-- 491 (588)
T PRK13657 424 SIEDNIRVG---------R-PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP-- 491 (588)
T ss_pred cHHHHHhcC---------C-CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC--
Confidence 222222110 0 10 0122222222222 222 233345699999999987655443211
Q ss_pred HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
-+..+|+....++.+.+.+.++|.+..+
T Consensus 492 -------------------iliLDEpts~LD~~t~~~i~~~l~~~~~ 519 (588)
T PRK13657 492 -------------------ILILDEATSALDVETEAKVKAALDELMK 519 (588)
T ss_pred -------------------EEEEeCCccCCCHHHHHHHHHHHHHHhc
Confidence 2446777788888888999988887643
No 306
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=2.8e-08 Score=90.21 Aligned_cols=159 Identities=11% Similarity=0.148 Sum_probs=89.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~ 89 (299)
++|.+.+++.++|+||||+|||||+++|++.+. .+.+.+++.++... ......+.. ...+.++.. ...
T Consensus 21 vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~-----~~~~~~~~~---~i~~v~q~~~~~~~ 92 (275)
T PRK13639 21 INFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYD-----KKSLLEVRK---TVGIVFQNPDDQLF 92 (275)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccc-----cchHHHHHh---heEEEeeChhhhhc
Confidence 567789999999999999999999999999765 35666776654210 000001000 001111110 000
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.....+.+. +.. .... .......+++..+++.+++..+. .....||+|++|++....++..-.+
T Consensus 93 ~~tv~e~i~-~~~-~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~------------ 157 (275)
T PRK13639 93 APTVEEDVA-FGP-LNLG-LSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPE------------ 157 (275)
T ss_pred cccHHHHHH-HHH-HHcC-CCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC------------
Confidence 011112221 000 0000 01112335566777888885544 5557899999999886654433111
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+...+.+.|.++.
T Consensus 158 ---------llllDEPt~gLD~~~~~~l~~~l~~l~ 184 (275)
T PRK13639 158 ---------IIVLDEPTSGLDPMGASQIMKLLYDLN 184 (275)
T ss_pred ---------EEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 234566666777778888888877763
No 307
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.56 E-value=3e-08 Score=87.59 Aligned_cols=44 Identities=23% Similarity=0.450 Sum_probs=36.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l 57 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 66 (234)
T cd03251 21 ISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV 66 (234)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEh
Confidence 5677889999999999999999999999998754 5566666544
No 308
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.56 E-value=1.8e-08 Score=98.93 Aligned_cols=159 Identities=13% Similarity=0.129 Sum_probs=87.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-c
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-P 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~ 90 (299)
++|.+.+++.++|+||||||||||+|+|++.+.+ +.+.+++.++... ..... .. ....+.++..... .
T Consensus 23 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----~~~~~---~~--~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 23 AALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFN----GPKSS---QE--AGIGIIHQELNLIPQ 93 (501)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CHHHH---Hh--CCEEEEEcchhccCC
Confidence 4677899999999999999999999999998754 5666776554221 00000 00 0001111111100 0
Q ss_pred hhhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
....+.+. +........... .+..+++..+++.+++... .+....||||++|++....++..-.+
T Consensus 94 ~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~----------- 161 (501)
T PRK10762 94 LTIAENIF-LGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESK----------- 161 (501)
T ss_pred CcHHHHhh-hccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCC-----------
Confidence 11112211 110000000001 1234566677888888543 45567899999999988766543221
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|++.
T Consensus 162 ----------lllLDEPt~~LD~~~~~~l~~~l~~l 187 (501)
T PRK10762 162 ----------VIIMDEPTDALTDTETESLFRVIREL 187 (501)
T ss_pred ----------EEEEeCCcCCCCHHHHHHHHHHHHHH
Confidence 23355555666666666666666554
No 309
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.56 E-value=3.4e-08 Score=87.99 Aligned_cols=44 Identities=27% Similarity=0.517 Sum_probs=36.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh----cCCeecccchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l----~~~~i~i~~~~l 57 (299)
++|.+.+++.++|.|+||||||||+++|++.. ..+.+.+++.++
T Consensus 20 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 67 (248)
T PRK09580 20 LNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 67 (248)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCcc
Confidence 56778899999999999999999999999973 245667776554
No 310
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.56 E-value=5.5e-08 Score=86.89 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=86.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh----cCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l----~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~ 89 (299)
++|.+.+++.++|.|+||||||||+++|++.. ..+.+.+++.++..... ...+. ....+.++.....
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~----~~~~~-----~~~~~~~q~~~~~ 96 (252)
T CHL00131 26 LNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP----EERAH-----LGIFLAFQYPIEI 96 (252)
T ss_pred ceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCCh----hhhhe-----eeEEEEecccccc
Confidence 46788999999999999999999999999962 24566777655432110 00000 0000111110000
Q ss_pred c-hhhhHHHhhcCc--cchhhcC--CCccHHHHHhhhcccCCHH-HH-HHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 P-SALRETIVEVPN--ITWEDIG--GLEGVKRELQELVQDVDLN-YI-AKVTN-GFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 90 ~-~~~~~~l~~l~~--~l~~~~~--r~p~~~~R~~~l~~~v~l~-~L-A~~t~-glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
. ....+.+..... ....... ......+++..+++.+++. .+ .+... .||+|++++++...++..-.+
T Consensus 97 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~----- 171 (252)
T CHL00131 97 PGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSE----- 171 (252)
T ss_pred ccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCC-----
Confidence 0 011111110000 0000000 0011234556677777774 33 34444 599999999987665543221
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|.+..
T Consensus 172 ----------------llllDEPt~~LD~~~~~~l~~~l~~~~ 198 (252)
T CHL00131 172 ----------------LAILDETDSGLDIDALKIIAEGINKLM 198 (252)
T ss_pred ----------------EEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 244667777777888888888887653
No 311
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.56 E-value=2e-08 Score=88.70 Aligned_cols=57 Identities=14% Similarity=0.090 Sum_probs=49.5
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
....++++.+||=|.++.|+.-+=..++ |+.||.|..=-.| +||||||||||||++-
T Consensus 112 ~e~~~~it~ddViGqEeAK~kcrli~~y---LenPe~Fg~WAPk--nVLFyGppGTGKTm~A 168 (368)
T COG1223 112 REIISDITLDDVIGQEEAKRKCRLIMEY---LENPERFGDWAPK--NVLFYGPPGTGKTMMA 168 (368)
T ss_pred hhhhccccHhhhhchHHHHHHHHHHHHH---hhChHHhcccCcc--eeEEECCCCccHHHHH
Confidence 3567889999999999999988777787 9999999876655 7999999999999763
No 312
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.55 E-value=7.3e-08 Score=86.15 Aligned_cols=159 Identities=11% Similarity=0.212 Sum_probs=84.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|+|+||+|||||+++|++... .+.+.+++.++..... .....+. ...+.++..
T Consensus 24 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~~~~------~i~~~~q~~ 95 (252)
T PRK14255 24 IDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE--DVVQLRK------QVGMVFQQP 95 (252)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc--cHHHhcC------eEEEEECCC
Confidence 456788999999999999999999999999643 4666677655432100 0000000 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCcc-HHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEG-VKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~-~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
........+.+... ..... ....+ ..+++...++.+++ ..+......||+|++++++...++..-.+
T Consensus 96 ~~~~~tv~~nl~~~-~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~---- 168 (252)
T PRK14255 96 NPFPFSIYENVIYG-LRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPD---- 168 (252)
T ss_pred ccCCCcHHHHHHHH-HHHcC--CCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCC----
Confidence 11111111111100 00000 00111 12333333333332 23455567899999999887665543221
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|.+..
T Consensus 169 -----------------llllDEPt~~LD~~~~~~l~~~l~~~~ 195 (252)
T PRK14255 169 -----------------VILLDEPTSALDPISSTQIENMLLELR 195 (252)
T ss_pred -----------------EEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 244666777777888888888887764
No 313
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.55 E-value=6.6e-08 Score=87.46 Aligned_cols=161 Identities=17% Similarity=0.237 Sum_probs=88.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~ 89 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++.... ......+.. ...+.++.. ...
T Consensus 31 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~----~~~~~~~~~---~i~~v~q~~~~~~~ 103 (268)
T PRK10419 31 VSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN----RAQRKAFRR---DIQMVFQDSISAVN 103 (268)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccC----hhHHHHHHh---cEEEEEcChhhccC
Confidence 5677899999999999999999999999997653 55666665443210 001111100 001111110 000
Q ss_pred c-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 P-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER 166 (299)
Q Consensus 90 ~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~ 166 (299)
. ....+.+......... ........++..+++.+++. .+......||+|++++++...++..-.+
T Consensus 104 ~~~t~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~---------- 171 (268)
T PRK10419 104 PRKTVREIIREPLRHLLS--LDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPK---------- 171 (268)
T ss_pred CCCCHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCC----------
Confidence 0 0111111100000000 00112234566777777773 3456668899999999886655443111
Q ss_pred HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....+..+.+.+.+.|+++.
T Consensus 172 -----------lllLDEPt~~LD~~~~~~~~~~l~~~~ 198 (268)
T PRK10419 172 -----------LLILDEAVSNLDLVLQAGVIRLLKKLQ 198 (268)
T ss_pred -----------EEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence 244566667777777788888777653
No 314
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.55 E-value=1e-07 Score=86.35 Aligned_cols=160 Identities=14% Similarity=0.318 Sum_probs=86.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+|+.++|.|+||+|||||+++|++.+. .+.+.+++.++..... . ...+ . +...+.++..
T Consensus 43 vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~---~~~~-~--~~i~~v~q~~ 114 (271)
T PRK14238 43 INLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY--S---VEEL-R--TNVGMVFQKP 114 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc--c---HHHH-h--hhEEEEecCC
Confidence 567789999999999999999999999999764 3566677655432100 0 0000 0 0011222111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccC----CH-HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDV----DL-NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v----~l-~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
........+.+..... ... ........+++...++.+ ++ ..+......||+|++++++...++..-.+
T Consensus 115 ~~~~~tv~eni~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~----- 187 (271)
T PRK14238 115 NPFPKSIYDNVTYGPK-IHG-IKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPD----- 187 (271)
T ss_pred ccccccHHHHHHHHHH-hcC-CCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCC-----
Confidence 1111111121110000 000 000001122333333333 23 33456668899999999987665543111
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+...+.+.|++..
T Consensus 188 ----------------lllLDEPt~~LD~~~~~~l~~~l~~~~ 214 (271)
T PRK14238 188 ----------------VILMDEPTSALDPISTLKVEELVQELK 214 (271)
T ss_pred ----------------EEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 244667777778888888888887763
No 315
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.55 E-value=7.8e-07 Score=92.39 Aligned_cols=60 Identities=22% Similarity=0.318 Sum_probs=44.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhc----------CCeecccchhhh--hccccccHHHHHHHHHHHHH
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQ----------ANFISVKGPELL--TMWFGESEANVRDIFDKVTM 78 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~----------~~~i~i~~~~l~--~~~~g~~~~~i~~~f~~a~~ 78 (299)
.....++|+||||||||++++.||..+. ..++.++...+. ..+.|+.+..++.+++.+..
T Consensus 206 ~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~ 277 (852)
T TIGR03345 206 RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKA 277 (852)
T ss_pred CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHh
Confidence 3445789999999999999999999764 234444544443 25667778889999987753
No 316
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.54 E-value=1.6e-07 Score=96.07 Aligned_cols=151 Identities=15% Similarity=0.190 Sum_probs=86.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
+++.+++|+.++|+|++|||||||++.|++...+ +.+.+++.++... ....++..+ .+.++....-..
T Consensus 493 isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~----~~~~lr~~i------~~v~Q~~~lf~g 562 (708)
T TIGR01193 493 ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI----DRHTLRQFI------NYLPQEPYIFSG 562 (708)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHc----CHHHHHHhe------EEEecCceehhH
Confidence 4667899999999999999999999999997654 6678888776442 111122111 111111111111
Q ss_pred hhhHHHhhcCccchhhcCCCcc-HHHHHhhhcccCCH-----------H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEG-VKRELQELVQDVDL-----------N-YIAKVTNGFSGADLTEICQRACKLAIRQSI 158 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~-~~~R~~~l~~~v~l-----------~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~ 158 (299)
+.++.+.-. ..|+ .++++...++..++ + .+......+||||+|+++...+...-.+
T Consensus 563 TI~eNi~l~---------~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~-- 631 (708)
T TIGR01193 563 SILENLLLG---------AKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSK-- 631 (708)
T ss_pred HHHHHHhcc---------CCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCC--
Confidence 222222110 0010 11222222222222 1 1333446699999999987654433111
Q ss_pred HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....+..+.+.+.++|.+.+
T Consensus 632 -------------------iliLDE~Ts~LD~~te~~i~~~L~~~~ 658 (708)
T TIGR01193 632 -------------------VLILDESTSNLDTITEKKIVNNLLNLQ 658 (708)
T ss_pred -------------------EEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 244667777888888888999888763
No 317
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.54 E-value=6e-08 Score=86.70 Aligned_cols=137 Identities=16% Similarity=0.179 Sum_probs=77.7
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC-CCchhh
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK-SSPSAL 93 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~-~~~~~~ 93 (299)
.+.+++.++|.||||||||||+++|++...+ +.+.+++..+. . . ++... ......
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~-~----~-----------------~q~~~~~~~~tv 78 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-Y----K-----------------PQYIKADYEGTV 78 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEE-E----e-----------------cccccCCCCCCH
Confidence 4567899999999999999999999998764 34444442110 0 0 00000 000011
Q ss_pred hHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy13773 94 RETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGN 172 (299)
Q Consensus 94 ~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~ 172 (299)
.+.+..... ... ....+...+++.+++..+ .+....||||++|+++...++..-.+
T Consensus 79 ~e~l~~~~~----~~~---~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~---------------- 135 (246)
T cd03237 79 RDLLSSITK----DFY---THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDAD---------------- 135 (246)
T ss_pred HHHHHHHhh----hcc---ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC----------------
Confidence 111111000 000 011234456666777544 45568899999999987665543211
Q ss_pred cccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 173 PAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.+.+.|+++
T Consensus 136 -----llllDEPt~~LD~~~~~~l~~~l~~~ 161 (246)
T cd03237 136 -----IYLLDEPSAYLDVEQRLMASKVIRRF 161 (246)
T ss_pred -----EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 23455666666777777777777765
No 318
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.54 E-value=5.3e-08 Score=86.93 Aligned_cols=152 Identities=15% Similarity=0.238 Sum_probs=92.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhcccc----ccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFG----ESEANVRDIFDKVTMENFRYAMGK 87 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g----~~~~~i~~~f~~a~~~~~~~~~~~ 87 (299)
.+|..+-.....|+|++|+|||||+|+||+...+ +.|.+++..+.+..-+ ...+.+..+|+.|+...-.
T Consensus 17 a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~----- 91 (352)
T COG4148 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY----- 91 (352)
T ss_pred EeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccce-----
Confidence 4556566678899999999999999999998875 5677787777543211 2244566677766542100
Q ss_pred CCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 88 SSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER 166 (299)
Q Consensus 88 ~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~ 166 (299)
..+..+.- .+.......+..+..-+++.. |.+++..+|||+.|+++...++.+-.+.+
T Consensus 92 ----tVrgNL~Y---------G~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LL-------- 150 (352)
T COG4148 92 ----TVRGNLRY---------GMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELL-------- 150 (352)
T ss_pred ----EEecchhh---------hhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCee--------
Confidence 01111110 011112233445566678854 56777899999999998877666544432
Q ss_pred HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+|+..+.+.-...++.--|++.+
T Consensus 151 -------------LmDEPLaSLD~~RK~EilpylERL~ 175 (352)
T COG4148 151 -------------LMDEPLASLDLPRKREILPYLERLR 175 (352)
T ss_pred -------------eecCchhhcccchhhHHHHHHHHHH
Confidence 2334444555556666666666654
No 319
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.54 E-value=6.6e-08 Score=85.78 Aligned_cols=154 Identities=17% Similarity=0.192 Sum_probs=86.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
+++.+.+++.++|.||||+|||||+++|++.+. .+.+.+++.++... . ..+ ....+.++....-.
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~----~--~~~------~~i~~~~q~~~~~~~ 86 (237)
T TIGR00968 19 VNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV----H--ARD------RKIGFVFQHYALFKH 86 (237)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC----C--hhh------cCEEEEecChhhccC
Confidence 457789999999999999999999999999765 35566666544221 0 000 00011111111100
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+..... ... .......+++..+++.+++..+ .+....||+|+.++++...++..-.+
T Consensus 87 ~t~~enl~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~------------- 150 (237)
T TIGR00968 87 LTVRDNIAFGLE-IRK--HPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ------------- 150 (237)
T ss_pred CcHHHHHHhHHH-hcC--CCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC-------------
Confidence 011111110000 000 0001123445566777777543 45557899999999887665543111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+++....++.+.+.|.+.|++.
T Consensus 151 --------llllDEP~~~LD~~~~~~~~~~l~~~ 176 (237)
T TIGR00968 151 --------VLLLDEPFGALDAKVRKELRSWLRKL 176 (237)
T ss_pred --------EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 24456666777778888888888765
No 320
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.54 E-value=5.7e-08 Score=84.84 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=85.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.|+||||||||+++|++...+ +.+.+++.++... ..+ +...+..+......
T Consensus 30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~-------~~~------~~i~~~~q~~~~~~~ 96 (214)
T PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG-------DRS------RFMAYLGHLPGLKAD 96 (214)
T ss_pred ceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch-------hhh------hceEEeecCcccccC
Confidence 5677899999999999999999999999997654 4555665443210 000 00011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+... . .... ....++...+++.+++... ......||+|++++++...++..-.
T Consensus 97 ~t~~e~l~~~-~----~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p-------------- 156 (214)
T PRK13543 97 LSTLENLHFL-C----GLHG-RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPA-------------- 156 (214)
T ss_pred CcHHHHHHHH-H----HhcC-CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCC--------------
Confidence 0111111110 0 0001 1223455566677777543 4555789999999988755443211
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
..+..+|+....++.+.+.|.+.|++.
T Consensus 157 -------~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (214)
T PRK13543 157 -------PLWLLDEPYANLDLEGITLVNRMISAH 183 (214)
T ss_pred -------CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 124456666677777777888887765
No 321
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.54 E-value=7.4e-08 Score=92.08 Aligned_cols=46 Identities=24% Similarity=0.502 Sum_probs=40.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT 59 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~ 59 (299)
++|.+.+++.+.|+||||+|||||+|.|.+... .+.+.+|+.++..
T Consensus 355 isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~q 402 (580)
T COG4618 355 ISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ 402 (580)
T ss_pred ceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhc
Confidence 678889999999999999999999999999654 5778899988754
No 322
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=8.1e-08 Score=86.37 Aligned_cols=161 Identities=14% Similarity=0.183 Sum_probs=85.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhh-ccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT-MWFGESEANVRDIFDKVTMENFRYAMGKSSP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~-~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~ 90 (299)
++|.+.+++.++|.|+||+|||||+++|++...+ +.+.+++.-... ....... ...+.. ...+.++......
T Consensus 29 vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~--~~~~~~---~i~~~~q~~~~~~ 103 (257)
T PRK14246 29 ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID--AIKLRK---EVGMVFQQPNPFP 103 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC--HHHHhc---ceEEEccCCccCC
Confidence 4567789999999999999999999999997654 333444322110 0000000 001000 0122222211111
Q ss_pred -hhhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 -SALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETEI 162 (299)
Q Consensus 91 -~~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~ 162 (299)
....+.+.. . .. .....+ +..+++..+++.+++ +.+......||+|+++++....++..-.+
T Consensus 104 ~~tv~~nl~~-~--~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~------ 173 (257)
T PRK14246 104 HLSIYDNIAY-P--LK-SHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPK------ 173 (257)
T ss_pred CCcHHHHHHH-H--HH-hcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCC------
Confidence 111222211 0 00 000011 223445556565555 34456678899999999887665544221
Q ss_pred HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+++....++.+...+.+.|.+++
T Consensus 174 ---------------llllDEPt~~LD~~~~~~l~~~l~~~~ 200 (257)
T PRK14246 174 ---------------VLLMDEPTSMIDIVNSQAIEKLITELK 200 (257)
T ss_pred ---------------EEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 244566667777778888888887664
No 323
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.54 E-value=3.2e-08 Score=97.39 Aligned_cols=159 Identities=9% Similarity=0.072 Sum_probs=87.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|+||||||||||+|+|++... .+.+.+++.++... ..... .. ....+.++......
T Consensus 24 vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~----~~~~~---~~--~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 24 VNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKL----DHKLA---AQ--LGIGIIYQELSVIDE 94 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCC----CHHHH---HH--CCeEEEeecccccCC
Confidence 567789999999999999999999999999875 45666776655321 10000 00 00011111111101
Q ss_pred hhhhHHHhhcCccchhhcCC-----CccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGG-----LEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRR 164 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r-----~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~ 164 (299)
....+.+. +.......... ..+..+++..+++.+++.. +.+....||||++|++....++..-.+
T Consensus 95 ~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~-------- 165 (510)
T PRK09700 95 LTVLENLY-IGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAK-------- 165 (510)
T ss_pred CcHHHHhh-hccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC--------
Confidence 11112221 10000000000 0123456677778888743 455668899999999987765543221
Q ss_pred HHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.+.+.|++.
T Consensus 166 -------------lllLDEPt~~LD~~~~~~l~~~l~~l 191 (510)
T PRK09700 166 -------------VIIMDEPTSSLTNKEVDYLFLIMNQL 191 (510)
T ss_pred -------------EEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 23355555566666666666665554
No 324
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=8.4e-08 Score=85.72 Aligned_cols=160 Identities=15% Similarity=0.262 Sum_probs=84.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.|+||+|||||+++|++.+. .+.+.+++.++..... ....++. ...+.++..
T Consensus 23 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~~~~------~i~~~~q~~ 94 (252)
T PRK14272 23 VNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV--DPVAMRR------RVGMVFQKP 94 (252)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc--CHHHhhc------eeEEEeccC
Confidence 456788999999999999999999999999764 3556677655432100 0000000 001111111
Q ss_pred CCCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 87 ~~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
.... ....+.+..... ...........+++..++..+++ ..+......||+|+.++++...++..-.+
T Consensus 95 ~~~~~~t~~enl~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~---- 168 (252)
T PRK14272 95 NPFPTMSVFDNVVAGLK--LAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPE---- 168 (252)
T ss_pred ccCcCCCHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCC----
Confidence 1111 111122110000 00000001122334344443432 22344557899999999887665443111
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+++....++.+.+.|.+.|++.+
T Consensus 169 -----------------llllDEP~~~LD~~~~~~l~~~l~~~~ 195 (252)
T PRK14272 169 -----------------ILLMDEPTSALDPASTARIEDLMTDLK 195 (252)
T ss_pred -----------------EEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 244666777777788888888887764
No 325
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.53 E-value=8.4e-08 Score=94.68 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=33.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh--c--CCeeccc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC--Q--ANFISVK 53 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l--~--~~~i~i~ 53 (299)
++|.+.+++.++|+||||||||||+|+|++.. . .+.+.++
T Consensus 19 is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~ 62 (520)
T TIGR03269 19 ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYH 62 (520)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEe
Confidence 56788999999999999999999999999975 2 3445554
No 326
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.53 E-value=2e-07 Score=93.00 Aligned_cols=151 Identities=15% Similarity=0.171 Sum_probs=83.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
.++.+++|+.++|+||+|||||||++.|++...+ +.+.+++.++... ....++..+ .+.++....-..
T Consensus 334 i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~----~~~~~~~~i------~~v~q~~~lf~~ 403 (569)
T PRK10789 334 VNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKL----QLDSWRSRL------AVVSQTPFLFSD 403 (569)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhC----CHHHHHhhe------EEEccCCeeccc
Confidence 5567899999999999999999999999997764 5566776655332 111111110 111111111111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-----------HHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-----------IAKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-----------LA~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.- .+.....++....++.+++. . +......+|||+.|+++...++..-.+
T Consensus 404 ti~~Ni~~---------~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~--- 471 (569)
T PRK10789 404 TVANNIAL---------GRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE--- 471 (569)
T ss_pred cHHHHHhc---------CCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC---
Confidence 22222210 00001122222223323321 1 223335699999999987654433111
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.+.+.|.+..
T Consensus 472 ------------------illlDEpts~LD~~~~~~i~~~l~~~~ 498 (569)
T PRK10789 472 ------------------ILILDDALSAVDGRTEHQILHNLRQWG 498 (569)
T ss_pred ------------------EEEEECccccCCHHHHHHHHHHHHHHh
Confidence 244667777778888888888888764
No 327
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.52 E-value=4.8e-08 Score=98.47 Aligned_cols=136 Identities=16% Similarity=0.207 Sum_probs=72.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhc-----cc-cccHHHHHHHHHHHHHHHHhhhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTM-----WF-GESEANVRDIFDKVTMENFRYAM 85 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~-----~~-g~~~~~i~~~f~~a~~~~~~~~~ 85 (299)
++|.+.+++.++|+|+||||||||+++|++.+.+ +.+.+++..+... .. ......++.+.. ....+..+.
T Consensus 35 is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~--~~ig~v~Q~ 112 (623)
T PRK10261 35 LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRG--ADMAMIFQE 112 (623)
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhC--CCEEEEEeC
Confidence 5778899999999999999999999999998754 4444554332100 00 001111111110 000111111
Q ss_pred c--CCCc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH----HHHHhcCCCCHHHHHHHHHHHHHHH
Q psy13773 86 G--KSSP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN----YIAKVTNGFSGADLTEICQRACKLA 153 (299)
Q Consensus 86 ~--~~~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~----~LA~~t~glSggDl~~Lv~~A~~~a 153 (299)
. .... ....+.+..... .... ....+..+|+..+++.+++. .+......||||+.|+++...++..
T Consensus 113 ~~~~l~~~~tv~e~l~~~~~-~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~ 185 (623)
T PRK10261 113 PMTSLNPVFTVGEQIAESIR-LHQG-ASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC 185 (623)
T ss_pred chhhcCCCCCHHHHHHHHHH-HhcC-CCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhC
Confidence 0 0111 112222211000 0000 01123346777888888883 3556778999999999998776654
No 328
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.52 E-value=4.4e-08 Score=96.42 Aligned_cols=160 Identities=11% Similarity=0.097 Sum_probs=91.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc---CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG---KS 88 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~---~~ 88 (299)
++|.+.+++.++|+||||||||||+++|++...+ +.+.+++.++... .....++ . ...+.++.. ..
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~~~---~---~i~~v~q~~~~~~~ 352 (510)
T PRK09700 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPR---SPLDAVK---K---GMAYITESRRDNGF 352 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCC---CHHHHHH---C---CcEEccCccccCCC
Confidence 4677899999999999999999999999997653 5566666544211 0000010 0 001222210 01
Q ss_pred Cc-hhhhHHHhhcCccc-----hhh--cCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773 89 SP-SALRETIVEVPNIT-----WED--IGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSI 158 (299)
Q Consensus 89 ~~-~~~~~~l~~l~~~l-----~~~--~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~ 158 (299)
.. ....+.+. +.... ... +.......+++..+++.+++. . +.+....||||++|++....++..-.
T Consensus 353 ~~~~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p--- 428 (510)
T PRK09700 353 FPNFSIAQNMA-ISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCP--- 428 (510)
T ss_pred cCCCcHHHHhc-cccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCC---
Confidence 11 11112211 11000 000 000112234556777888884 3 45666889999999998766554311
Q ss_pred HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.+.+.|++.+
T Consensus 429 ------------------~lLlLDEPt~~LD~~~~~~l~~~l~~l~ 456 (510)
T PRK09700 429 ------------------EVIIFDEPTRGIDVGAKAEIYKVMRQLA 456 (510)
T ss_pred ------------------CEEEECCCCCCcCHHHHHHHHHHHHHHH
Confidence 1245677778888888899998888763
No 329
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.52 E-value=6.8e-08 Score=90.13 Aligned_cols=134 Identities=18% Similarity=0.219 Sum_probs=88.4
Q ss_pred hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-------CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhh
Q psy13773 13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAM 85 (299)
Q Consensus 13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-------~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~ 85 (299)
-++|.+.+|+.+.|+|.+|+|||..+++|.+.+.. +.+.+++.++... +++.++.+...-....|+..+
T Consensus 28 ~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~----se~~lr~iRG~~I~MIFQEPM 103 (534)
T COG4172 28 GISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA----SERQLRGVRGNKIGMIFQEPM 103 (534)
T ss_pred cceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC----CHHHHhhhcccceEEEecccc
Confidence 36788999999999999999999999999998753 4567788887654 555565544322222333344
Q ss_pred cCCCchhhh-HHHhhcCccchhhcCCCccHHHHHhhhcccCCH----HHHHHhcCCCCHHHHHHHHHHHHHH
Q psy13773 86 GKSSPSALR-ETIVEVPNITWEDIGGLEGVKRELQELVQDVDL----NYIAKVTNGFSGADLTEICQRACKL 152 (299)
Q Consensus 86 ~~~~~~~~~-~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l----~~LA~~t~glSggDl~~Lv~~A~~~ 152 (299)
.+.++-... ..+.+... +... .+....++|+.++++.+++ ..+..+++.+|||+.|+++.+.++.
T Consensus 104 tSLNPl~tIg~Qi~E~l~-~Hrg-~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALa 173 (534)
T COG4172 104 TSLNPLHTIGKQLAEVLR-LHRG-LSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALA 173 (534)
T ss_pred cccCcHhHHHHHHHHHHH-HHhc-ccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHc
Confidence 443332222 22222110 0100 1134567788889999988 4588999999999999999765443
No 330
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.52 E-value=8.2e-08 Score=86.97 Aligned_cols=155 Identities=14% Similarity=0.101 Sum_probs=88.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC---
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS--- 88 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~--- 88 (299)
++|.+.+++.++|.||||+|||||+++|++.+.+ +.+.+++.++... . .. ....+.++....
T Consensus 26 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~--------~---~~--~~i~~v~q~~~~~~~ 92 (272)
T PRK15056 26 ASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA--------L---QK--NLVAYVPQSEEVDWS 92 (272)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHh--------h---cc--ceEEEeccccccccC
Confidence 5677889999999999999999999999998654 5566665543210 0 00 000111111000
Q ss_pred CchhhhHHHhhcCccchh-hcCCC--ccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 89 SPSALRETIVEVPNITWE-DIGGL--EGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRR 164 (299)
Q Consensus 89 ~~~~~~~~l~~l~~~l~~-~~~r~--p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~ 164 (299)
......+.+. +.. ... ..... ....+++..+++.+++.. +......||+|+.+++....++..-.+
T Consensus 93 ~~~~~~~~i~-~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~-------- 162 (272)
T PRK15056 93 FPVLVEDVVM-MGR-YGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQ-------- 162 (272)
T ss_pred CCcchhhhee-ccc-ccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCC--------
Confidence 0000111110 000 000 00001 122445566777778854 445567899999999887665543111
Q ss_pred HHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++.+
T Consensus 163 -------------llllDEPt~~LD~~~~~~l~~~L~~~~ 189 (272)
T PRK15056 163 -------------VILLDEPFTGVDVKTEARIISLLRELR 189 (272)
T ss_pred -------------EEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 244667777778888888888887764
No 331
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=1.4e-07 Score=86.88 Aligned_cols=163 Identities=13% Similarity=0.276 Sum_probs=89.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|+|+||+|||||+++|++.+. .+.+.+++.++... ......++. ...+.++..
T Consensus 64 is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~--~~~~~~~~~------~i~~v~q~~ 135 (305)
T PRK14264 64 VSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD--GVNLVELRK------RVGMVFQSP 135 (305)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc--cccHHHHhh------ceEEEccCC
Confidence 567789999999999999999999999999763 46677776554311 000001110 001111111
Q ss_pred CCCchhhhHHHhh-cCc--cchh-----hcCCC-cc-HHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVE-VPN--ITWE-----DIGGL-EG-VKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACK 151 (299)
Q Consensus 87 ~~~~~~~~~~l~~-l~~--~l~~-----~~~r~-p~-~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~ 151 (299)
........+.+.. ... ..+. ..... .. ..+++..+++.+++ ..+......||+|+.++++...++
T Consensus 136 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL 215 (305)
T PRK14264 136 NPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCL 215 (305)
T ss_pred ccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHH
Confidence 1111111111110 000 0000 00000 11 13445556665554 233455688999999999877655
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 152 LAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 152 ~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
..-.+ .+..+++....++.+...|.+.|++...
T Consensus 216 ~~~p~---------------------lLLLDEPtsgLD~~~~~~l~~~L~~~~~ 248 (305)
T PRK14264 216 AVDPE---------------------VILMDEPASALDPIATSKIEDLIEELAE 248 (305)
T ss_pred hcCCC---------------------EEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 43221 2446667777778888888888887743
No 332
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.50 E-value=5.2e-08 Score=95.96 Aligned_cols=153 Identities=12% Similarity=0.122 Sum_probs=85.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||||||||+++|++.+.+ +.+.+++.++... .....+ . ....+.++......
T Consensus 30 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~---~--~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 30 IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARL----TPAKAH---Q--LGIYLVPQEPLLFPN 100 (510)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCC----CHHHHH---h--CCEEEEeccCccCCC
Confidence 5677899999999999999999999999998754 5566666554321 111100 0 00011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.. . . .......+++..+++.+++.. +.+....||||+.|++....++..-.+
T Consensus 101 ~tv~e~l~~-~--~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~------------- 160 (510)
T PRK15439 101 LSVKENILF-G--L----PKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSR------------- 160 (510)
T ss_pred CcHHHHhhc-c--c----ccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCC-------------
Confidence 111111110 0 0 001123456667777788754 455668899999999987765543211
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|++.
T Consensus 161 --------lllLDEPt~~LD~~~~~~l~~~l~~~ 186 (510)
T PRK15439 161 --------ILILDEPTASLTPAETERLFSRIREL 186 (510)
T ss_pred --------EEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 23345555556666666666665554
No 333
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.50 E-value=4.8e-08 Score=95.93 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=85.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc----CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS- 88 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~----~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~- 88 (299)
++|.+.+++.++|+||||||||||+++|++... .+.+.+++.++... ... .... ....+.++....
T Consensus 20 isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~----~~~---~~~~--~~i~~v~q~~~~~ 90 (500)
T TIGR02633 20 IDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKAS----NIR---DTER--AGIVIIHQELTLV 90 (500)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCC----CHH---HHHh--CCEEEEeeccccC
Confidence 577889999999999999999999999999765 35566666554321 000 0000 000111111110
Q ss_pred CchhhhHHHhhcCccchhh--cCCCccHHHHHhhhcccCCHHHH--HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 89 SPSALRETIVEVPNITWED--IGGLEGVKRELQELVQDVDLNYI--AKVTNGFSGADLTEICQRACKLAIRQSIETEIRR 164 (299)
Q Consensus 89 ~~~~~~~~l~~l~~~l~~~--~~r~p~~~~R~~~l~~~v~l~~L--A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~ 164 (299)
......+.+. +....... ........+++..+++.+++... ......||||++|++....++..-.+
T Consensus 91 ~~~tv~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~-------- 161 (500)
T TIGR02633 91 PELSVAENIF-LGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQAR-------- 161 (500)
T ss_pred CCCcHHHHHH-hhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCC--------
Confidence 0011111111 11000000 00011234566677777877543 24467899999999988776654222
Q ss_pred HHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.+.+.|++.
T Consensus 162 -------------lllLDEPt~~LD~~~~~~l~~~l~~l 187 (500)
T TIGR02633 162 -------------LLILDEPSSSLTEKETEILLDIIRDL 187 (500)
T ss_pred -------------EEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 13344555555555666666555544
No 334
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.50 E-value=1.5e-07 Score=84.40 Aligned_cols=141 Identities=12% Similarity=0.199 Sum_probs=82.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|.||||+|||||+++|++.+.+ +.+.+++..-+. .+++... +. .....
T Consensus 23 vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~-----------~v~q~~~---~~----~~l~~ 84 (251)
T PRK09544 23 VSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIG-----------YVPQKLY---LD----TTLPL 84 (251)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEE-----------Eeccccc---cc----cccCh
Confidence 5678899999999999999999999999998754 334443211000 0010000 00 00000
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA 170 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~ 170 (299)
...+.+. + .. ....+++..+++.+++..+ ......||+|+.++++...++..-.
T Consensus 85 ~~~~~~~-~----~~-----~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p--------------- 139 (251)
T PRK09544 85 TVNRFLR-L----RP-----GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRP--------------- 139 (251)
T ss_pred hHHHHHh-c----cc-----cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCC---------------
Confidence 0011110 0 00 0012345566777777554 4556889999999998765443311
Q ss_pred CCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
..+..+|+....++.+.+.|.+.|.+.
T Consensus 140 ------~lllLDEPt~~LD~~~~~~l~~~L~~~ 166 (251)
T PRK09544 140 ------QLLVLDEPTQGVDVNGQVALYDLIDQL 166 (251)
T ss_pred ------CEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 124466777777788888888888765
No 335
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.50 E-value=2.1e-07 Score=78.88 Aligned_cols=43 Identities=19% Similarity=0.422 Sum_probs=35.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPE 56 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~ 56 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.+
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~ 65 (178)
T cd03247 21 LSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVP 65 (178)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEE
Confidence 5678899999999999999999999999998653 455555543
No 336
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=1.7e-07 Score=84.55 Aligned_cols=162 Identities=12% Similarity=0.189 Sum_probs=83.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.|+||+|||||+++|++... .+.+.+++..+...........++. ...+.++..
T Consensus 35 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~------~i~~~~q~~ 108 (265)
T PRK14252 35 INMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRM------RISMVFQKP 108 (265)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhc------cEEEEccCC
Confidence 456788999999999999999999999999764 3456666543321000000000000 001122111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-----NYIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-----~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
..-.....+.+.. ...... +......+++...+++.+++ +.+......||+|+++++....++..-.+
T Consensus 109 ~~~~~tv~eni~~-~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~----- 181 (265)
T PRK14252 109 NPFPKSIFENVAY-GLRIRG-VKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPE----- 181 (265)
T ss_pred cCCcchHHHHHHh-HHHHcC-CChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCC-----
Confidence 1111111121110 000000 00001112344444443432 23445668899999999886654443221
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.|++.+
T Consensus 182 ----------------llllDEPt~gLD~~~~~~l~~~l~~l~ 208 (265)
T PRK14252 182 ----------------ILLFDEPTSALDPIATASIEELISDLK 208 (265)
T ss_pred ----------------EEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 244566666777777888888887764
No 337
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.50 E-value=2.3e-07 Score=94.65 Aligned_cols=151 Identities=16% Similarity=0.166 Sum_probs=87.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
.++.+++|+.++|+|++|||||||++.|++... .+.+.+++.++.... ...++... .+.++....-..
T Consensus 476 i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~----~~~~r~~i------~~v~q~~~lf~~ 545 (694)
T TIGR01846 476 LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIAD----PAWLRRQM------GVVLQENVLFSR 545 (694)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCC----HHHHHHhC------eEEccCCeehhh
Confidence 566789999999999999999999999999765 467778887664321 11111100 111111111111
Q ss_pred hhhHHHhhcCccchhhcCCCcc-HHHHHhhhcccCCHHH------------HHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEG-VKRELQELVQDVDLNY------------IAKVTNGFSGADLTEICQRACKLAIRQSI 158 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~-~~~R~~~l~~~v~l~~------------LA~~t~glSggDl~~Lv~~A~~~a~~r~~ 158 (299)
+.++.+.- . .|+ ..++....++..++.+ +......+|||++|+++...++..-.+
T Consensus 546 ti~eNi~~---------~-~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~-- 613 (694)
T TIGR01846 546 SIRDNIAL---------C-NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPR-- 613 (694)
T ss_pred hHHHHHhc---------C-CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCC--
Confidence 22222211 0 011 1222223333333321 233346799999999987665533111
Q ss_pred HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
-+..+|+....++.+.+.+.++|.+..+
T Consensus 614 -------------------ililDEpts~LD~~~~~~i~~~l~~~~~ 641 (694)
T TIGR01846 614 -------------------ILIFDEATSALDYESEALIMRNMREICR 641 (694)
T ss_pred -------------------EEEEECCCcCCCHHHHHHHHHHHHHHhC
Confidence 2446677788888888999999988743
No 338
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=7.7e-08 Score=85.07 Aligned_cols=44 Identities=20% Similarity=0.473 Sum_probs=36.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l 57 (299)
+++.+.+++.++|.||||+|||||+++|++... .+.+.+++.++
T Consensus 20 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~ 65 (236)
T cd03253 20 VSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDI 65 (236)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEh
Confidence 467788999999999999999999999999765 35566666554
No 339
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=1.3e-07 Score=79.69 Aligned_cols=43 Identities=26% Similarity=0.478 Sum_probs=35.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPE 56 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~ 56 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.+
T Consensus 21 i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~ 65 (171)
T cd03228 21 VSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVD 65 (171)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEE
Confidence 5677899999999999999999999999998764 445555443
No 340
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=7.4e-08 Score=83.44 Aligned_cols=134 Identities=17% Similarity=0.187 Sum_probs=78.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-----CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS 88 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-----~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~ 88 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++... ...+. +...+.++....
T Consensus 26 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~---------~~~~~--~~i~~~~q~~~~ 94 (202)
T cd03233 26 FSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF---------AEKYP--GEIIYVSEEDVH 94 (202)
T ss_pred EEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccc---------hhhhc--ceEEEEeccccc
Confidence 466789999999999999999999999999865 45566666544211 00000 000111111000
Q ss_pred Cc-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 89 SP-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 89 ~~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
.. ....+.+.. . .+. . .......||+|+.+++....++..-.+
T Consensus 95 ~~~~tv~~~l~~------------~---~~~-------~---~~~~~~~LS~Ge~qrl~laral~~~p~----------- 138 (202)
T cd03233 95 FPTLTVRETLDF------------A---LRC-------K---GNEFVRGISGGERKRVSIAEALVSRAS----------- 138 (202)
T ss_pred CCCCcHHHHHhh------------h---hhh-------c---cccchhhCCHHHHHHHHHHHHHhhCCC-----------
Confidence 00 011111100 0 000 0 234457899999999887665544222
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.|.+.+++..
T Consensus 139 ----------llllDEPt~~LD~~~~~~~~~~l~~~~ 165 (202)
T cd03233 139 ----------VLCWDNSTRGLDSSTALEILKCIRTMA 165 (202)
T ss_pred ----------EEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 244667777788889999999988763
No 341
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.47 E-value=1.2e-07 Score=95.37 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=87.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-----CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS 88 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-----~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~ 88 (299)
+++.+++|+.++|.||+|+|||||+++|++.... +.+.+++..+.. ..+ +. ...+..+....
T Consensus 44 vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~-------~~~----~~--~i~yv~Q~~~~ 110 (617)
T TIGR00955 44 VSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA-------KEM----RA--ISAYVQQDDLF 110 (617)
T ss_pred CEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH-------HHH----hh--hceeecccccc
Confidence 5667899999999999999999999999997643 346666654321 111 11 11222222211
Q ss_pred Cc-hhhhHHHhhcCccch-hhcCCCccHHHHHhhhcccCCHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 89 SP-SALRETIVEVPNITW-EDIGGLEGVKRELQELVQDVDLNYIAKVT-------NGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 89 ~~-~~~~~~l~~l~~~l~-~~~~r~p~~~~R~~~l~~~v~l~~LA~~t-------~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
-. .+.++.+.-. ..+. +.-....+..+|++.+++.+++...++.. .++|||+++++....++..-.+
T Consensus 111 ~~~lTV~e~l~f~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~--- 186 (617)
T TIGR00955 111 IPTLTVREHLMFQ-AHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPP--- 186 (617)
T ss_pred CccCcHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCC---
Confidence 11 1222322210 0000 00000123445677888888886554322 3699999999987765544221
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....+.-+..++.+.|++.
T Consensus 187 ------------------vlllDEPtsgLD~~~~~~l~~~L~~l 212 (617)
T TIGR00955 187 ------------------LLFCDEPTSGLDSFMAYSVVQVLKGL 212 (617)
T ss_pred ------------------EEEeeCCCcchhHHHHHHHHHHHHHH
Confidence 13345555666666777777776665
No 342
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.47 E-value=2.5e-07 Score=94.63 Aligned_cols=46 Identities=30% Similarity=0.533 Sum_probs=39.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT 59 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~ 59 (299)
.++.+++|+.++|+||+|||||||++.|++...+ +.+.+++.++..
T Consensus 500 isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~ 547 (711)
T TIGR00958 500 LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQ 547 (711)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHh
Confidence 5677899999999999999999999999997764 667788877654
No 343
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.46 E-value=8.9e-08 Score=95.00 Aligned_cols=45 Identities=27% Similarity=0.529 Sum_probs=37.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELL 58 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~ 58 (299)
.++.+++|+.++|+||+|||||||++.|++...+ +.+.+++.++.
T Consensus 337 ~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~ 383 (544)
T TIGR01842 337 ISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLK 383 (544)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehh
Confidence 5577899999999999999999999999998764 55667766553
No 344
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.45 E-value=1.7e-07 Score=81.10 Aligned_cols=44 Identities=27% Similarity=0.437 Sum_probs=36.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh----cCCeecccchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l----~~~~i~i~~~~l 57 (299)
++|.+.+++.++|.|+||+|||||+++|++.. ..+.+.+++.++
T Consensus 19 is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~ 66 (200)
T cd03217 19 VNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDI 66 (200)
T ss_pred cceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEEC
Confidence 45778999999999999999999999999973 346677776654
No 345
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.45 E-value=4.6e-08 Score=81.88 Aligned_cols=43 Identities=23% Similarity=0.354 Sum_probs=35.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPE 56 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~ 56 (299)
.+|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.+
T Consensus 19 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~ 63 (163)
T cd03216 19 VSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE 63 (163)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 4677899999999999999999999999998754 445555443
No 346
>KOG0057|consensus
Probab=98.45 E-value=4.9e-07 Score=87.23 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=41.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTM 60 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~~~ 60 (299)
++|.|+.|+.|.|+|+|||||||++|+|-+-.. .+.+.||+.++...
T Consensus 371 vsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~ 418 (591)
T KOG0057|consen 371 VSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEV 418 (591)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhh
Confidence 678899999999999999999999999999664 67889999988654
No 347
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.45 E-value=3.4e-07 Score=82.24 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=36.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l 57 (299)
++|.+.+++.++|.|++|+|||||+++|++... .+.+.+++.++
T Consensus 40 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i 85 (257)
T cd03288 40 VKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDI 85 (257)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEh
Confidence 456788999999999999999999999999765 45566766554
No 348
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.45 E-value=1e-07 Score=105.77 Aligned_cols=154 Identities=15% Similarity=0.217 Sum_probs=95.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+|+.++|.||||+|||||+|+|++...+ +.+.+++.++... ...+.+ ...++++......
T Consensus 1958 ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~--------~~~~r~---~IGy~pQ~~~L~~~ 2026 (2272)
T TIGR01257 1958 LCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN--------ISDVHQ---NMGYCPQFDAIDDL 2026 (2272)
T ss_pred eEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcch--------HHHHhh---hEEEEeccccCCCC
Confidence 5678899999999999999999999999998754 5666776554211 111111 1133343322211
Q ss_pred hhhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
-..++.+.-. ..+...+ +.+++++.+++.+++...+ ++...||||++|+|....++..-.+
T Consensus 2027 LTv~E~L~l~-----a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~----------- 2090 (2272)
T TIGR01257 2027 LTGREHLYLY-----ARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP----------- 2090 (2272)
T ss_pred CCHHHHHHHH-----HHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC-----------
Confidence 1222322210 0111122 2345666788889996655 5568999999999987665543211
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.+.+.|++.+
T Consensus 2091 ----------VLLLDEPTsGLDp~sr~~l~~lL~~l~ 2117 (2272)
T TIGR01257 2091 ----------LVLLDEPTTGMDPQARRMLWNTIVSII 2117 (2272)
T ss_pred ----------EEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 244667777778888888888887763
No 349
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.45 E-value=2.9e-07 Score=79.85 Aligned_cols=144 Identities=13% Similarity=0.163 Sum_probs=79.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
+++.+.+++.++|.|++|+|||||+++|++... .+.+.+++.++... ....++ ....+.++.......
T Consensus 27 isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~------~~i~~v~q~~~~~~~ 96 (207)
T cd03369 27 VSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTI----PLEDLR------SSLTIIPQDPTLFSG 96 (207)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHC----CHHHHH------hhEEEEecCCcccCc
Confidence 456788999999999999999999999999765 45566666544221 000010 000122211111111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAG 171 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~ 171 (299)
...+.+.. .. .. . .+++...++ +......||+|+++++....++..-.+
T Consensus 97 tv~~~l~~----~~----~~-~-~~~~~~~l~------~~~~~~~LS~G~~qrv~laral~~~p~--------------- 145 (207)
T cd03369 97 TIRSNLDP----FD----EY-S-DEEIYGALR------VSEGGLNLSQGQRQLLCLARALLKRPR--------------- 145 (207)
T ss_pred cHHHHhcc----cC----CC-C-HHHHHHHhh------ccCCCCcCCHHHHHHHHHHHHHhhCCC---------------
Confidence 11122210 00 01 1 111222222 345668899999999887655533111
Q ss_pred CcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 172 NPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.|.+.|++..
T Consensus 146 ------llllDEP~~~LD~~~~~~l~~~l~~~~ 172 (207)
T cd03369 146 ------VLVLDEATASIDYATDALIQKTIREEF 172 (207)
T ss_pred ------EEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 234556666667777777877777653
No 350
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.44 E-value=1.6e-07 Score=93.51 Aligned_cols=144 Identities=17% Similarity=0.232 Sum_probs=81.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
+++.+++++.++|+||+|||||||++.|++... .+.+.+++.++... ....++..+.. .. ++ ..
T Consensus 361 vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~----~~~~~~~~i~~------v~--q~--~~ 426 (555)
T TIGR01194 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSAD----SRDDYRDLFSA------IF--AD--FH 426 (555)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CHHHHHhhCcE------Ec--cC--hh
Confidence 557788999999999999999999999999765 46677777666432 11112211110 00 00 00
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVT------NGFSGADLTEICQRACKLAIRQSIETEIRR 164 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t------~glSggDl~~Lv~~A~~~a~~r~~~~~~~~ 164 (299)
.....+.+ + . .....+++....++.+++.+ +.... ..+|||++|+++...++..-.+
T Consensus 427 lf~~ti~~--n-~-----~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~-------- 490 (555)
T TIGR01194 427 LFDDLIGP--D-E-----GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRP-------- 490 (555)
T ss_pred hhhhhhhc--c-c-----ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCC--------
Confidence 00000000 0 0 00112334445555555533 33333 3499999999887654433111
Q ss_pred HHHHhcCCcccccccccCCCCCCcccccHHHHHHHH
Q psy13773 165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAM 200 (299)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL 200 (299)
-+..+|+....++-+.+.+.+++
T Consensus 491 -------------ililDE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 491 -------------ILLFDEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred -------------EEEEeCCccCCCHHHHHHHHHHH
Confidence 24466777777888888887765
No 351
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.44 E-value=5e-08 Score=78.71 Aligned_cols=45 Identities=29% Similarity=0.488 Sum_probs=37.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELL 58 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~ 58 (299)
+++.+.+++.++|+|++|||||||+++|++.... +.+.+++.++.
T Consensus 4 v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~ 50 (137)
T PF00005_consen 4 VSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDIS 50 (137)
T ss_dssp EEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGT
T ss_pred eEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccc
Confidence 4677889999999999999999999999998764 45666665554
No 352
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=1.5e-07 Score=92.53 Aligned_cols=161 Identities=9% Similarity=0.046 Sum_probs=92.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc---C
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG---K 87 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~---~ 87 (299)
++|.+.+++.++|+||||+|||||+|+|++... .+.+.+++.++.... .....+. ...+.++.. .
T Consensus 281 vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~---~~~~~~~------~i~~v~q~~~~~~ 351 (506)
T PRK13549 281 VSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRN---PQQAIAQ------GIAMVPEDRKRDG 351 (506)
T ss_pred eeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCC---HHHHHHC------CCEEeCcchhhCC
Confidence 467889999999999999999999999999764 456666665542110 0000000 001111110 0
Q ss_pred C-CchhhhHHHhhcC-ccchh-hcCCCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 88 S-SPSALRETIVEVP-NITWE-DIGGLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETEI 162 (299)
Q Consensus 88 ~-~~~~~~~~l~~l~-~~l~~-~~~r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~ 162 (299)
. ......+.+.... ..... .........+++..+++.+++. .+.+....||||++|++....++..-.+
T Consensus 352 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~------ 425 (506)
T PRK13549 352 IVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPK------ 425 (506)
T ss_pred CcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCC------
Confidence 0 0011111111000 00000 0000112335667788888884 3456678999999999988765543221
Q ss_pred HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.+.+.|++++
T Consensus 426 ---------------lllLDEPt~~LD~~~~~~l~~~l~~l~ 452 (506)
T PRK13549 426 ---------------ILILDEPTRGIDVGAKYEIYKLINQLV 452 (506)
T ss_pred ---------------EEEEcCCCCCcCHhHHHHHHHHHHHHH
Confidence 245677788888888889888887663
No 353
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.44 E-value=3.6e-07 Score=79.86 Aligned_cols=44 Identities=23% Similarity=0.344 Sum_probs=36.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l 57 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 65 (218)
T cd03290 20 INIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNE 65 (218)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccc
Confidence 467788999999999999999999999999764 45566666544
No 354
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.44 E-value=8e-08 Score=94.16 Aligned_cols=160 Identities=13% Similarity=0.086 Sum_probs=84.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~ 90 (299)
++|.+.+++.++|+||||||||||+++|++.+.+ +.+.+++.++... ... ..+. ....+.++.... ..
T Consensus 17 vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~---~~~~--~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 17 VNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFK----SSK---EALE--NGISMVHQELNLVLQ 87 (491)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCC----CHH---HHHh--CCEEEEecccccccC
Confidence 5677899999999999999999999999998754 5566676554221 000 0000 000111111110 00
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+..................+++..+++.+++.. +.+....||||++|++....++..-.+
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~------------- 154 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAK------------- 154 (491)
T ss_pred CCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCC-------------
Confidence 111121110000000000001122345667777777743 345568899999999987765543221
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.+.+.|++.
T Consensus 155 --------lllLDEPt~~LD~~~~~~l~~~l~~l 180 (491)
T PRK10982 155 --------IVIMDEPTSSLTEKEVNHLFTIIRKL 180 (491)
T ss_pred --------EEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 13344555555555555555555443
No 355
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=2.9e-07 Score=93.03 Aligned_cols=166 Identities=12% Similarity=0.127 Sum_probs=86.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhccc----cccHHHHHHHHHHHHHH-HHhhhh-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWF----GESEANVRDIFDKVTME-NFRYAM- 85 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~----g~~~~~i~~~f~~a~~~-~~~~~~- 85 (299)
++|.+.+++.++|+||||||||||+|+|++...+ +.|.+++...+.... ......+..++...... .+....
T Consensus 20 vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 99 (638)
T PRK10636 20 ATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLH 99 (638)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHH
Confidence 6678899999999999999999999999997654 445555432111000 00011222222211000 000000
Q ss_pred -cCCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 86 -GKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETEI 162 (299)
Q Consensus 86 -~~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~ 162 (299)
...... . ..+..+....+ . ....+...|+..+++.+++. .+......||||+.+++....++..-.+
T Consensus 100 ~~~~~~~-~-~~~~~~~~~~~-~-~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~------ 169 (638)
T PRK10636 100 DANERND-G-HAIATIHGKLD-A-IDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSD------ 169 (638)
T ss_pred HHhccCC-H-HHHHHHHHHHH-h-cCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCC------
Confidence 000000 0 00000000000 0 01123456777888888884 4556678899999999987765543221
Q ss_pred HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+++....++.+.+.+.+.|+++.
T Consensus 170 ---------------lLLLDEPtn~LD~~~~~~L~~~L~~~~ 196 (638)
T PRK10636 170 ---------------LLLLDEPTNHLDLDAVIWLEKWLKSYQ 196 (638)
T ss_pred ---------------EEEEcCCCCcCCHHHHHHHHHHHHhCC
Confidence 233445555555555666666665543
No 356
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.43 E-value=2.4e-07 Score=90.82 Aligned_cols=162 Identities=10% Similarity=0.096 Sum_probs=90.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchhhhhcccc-ccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFG-ESEANVRDIFDKVTMENFRYAMGKSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~l~~~~~g-~~~~~i~~~f~~a~~~~~~~~~~~~~ 89 (299)
++|.+.+++.++|.||||||||||+|+|++... .+.+.+++.++...... .....+..+++... +. ...
T Consensus 279 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~---~~----~~~ 351 (490)
T PRK10938 279 LSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLH---LD----YRV 351 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHH---hh----ccc
Confidence 567789999999999999999999999999654 35566666543210000 00001111111000 00 000
Q ss_pred chhhhHHHhh-cCccchhhcCCC-ccHHHHHhhhcccCCHHH-HH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVE-VPNITWEDIGGL-EGVKRELQELVQDVDLNY-IA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRE 165 (299)
Q Consensus 90 ~~~~~~~l~~-l~~~l~~~~~r~-p~~~~R~~~l~~~v~l~~-LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~ 165 (299)
.....+.+.. ..... ...... ....+++..+++.+++.. +. .....||+|++|+++...++..-.+
T Consensus 352 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~--------- 421 (490)
T PRK10938 352 STSVRNVILSGFFDSI-GIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPT--------- 421 (490)
T ss_pred CCcHHHHHHhcccccc-ccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCC---------
Confidence 0011111110 00000 000011 123456677888888864 44 4557899999999987665543221
Q ss_pred HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.+.+.|++..
T Consensus 422 ------------lllLDEPt~gLD~~~~~~l~~~L~~l~ 448 (490)
T PRK10938 422 ------------LLILDEPLQGLDPLNRQLVRRFVDVLI 448 (490)
T ss_pred ------------EEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 244667777778888888888887763
No 357
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.43 E-value=7.2e-08 Score=94.74 Aligned_cols=160 Identities=13% Similarity=0.094 Sum_probs=84.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.||||+|||||+++|++... .+.+.+++.++... ... ..+.. ...+.++......
T Consensus 23 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~----~~~---~~~~~--~i~~v~q~~~~~~~ 93 (501)
T PRK11288 23 ISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFA----STT---AALAA--GVAIIYQELHLVPE 93 (501)
T ss_pred eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC----CHH---HHHhC--CEEEEEechhccCC
Confidence 567889999999999999999999999999765 45666666554211 000 00000 0011111110000
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+..................+++..+++.+++.. +......||||++|+++...++..-.+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~------------- 160 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNAR------------- 160 (501)
T ss_pred CCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCC-------------
Confidence 111121111000000000001123456667777777743 345567899999999987665544221
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.+.+.|.+.
T Consensus 161 --------lllLDEPt~~LD~~~~~~l~~~l~~~ 186 (501)
T PRK11288 161 --------VIAFDEPTSSLSAREIEQLFRVIREL 186 (501)
T ss_pred --------EEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 13344555555555555665555543
No 358
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.42 E-value=1e-07 Score=93.88 Aligned_cols=161 Identities=13% Similarity=0.110 Sum_probs=92.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc---CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG---KS 88 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~---~~ 88 (299)
++|.+.+++.++|.||||||||||+++|++.+. .+.+.+++.++... .... .+.. ...+.++.. ..
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~----~~~~---~~~~--~i~~v~q~~~~~~l 352 (510)
T PRK15439 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINAL----STAQ---RLAR--GLVYLPEDRQSSGL 352 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCC----CHHH---HHhC--CcEECCCChhhCCc
Confidence 567789999999999999999999999999765 45566666554321 1000 0000 001111110 00
Q ss_pred -CchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 89 -SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE 165 (299)
Q Consensus 89 -~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~ 165 (299)
......+.+.................++++..+++.+++. . +.+....||||++|++....++..-.+
T Consensus 353 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~--------- 423 (510)
T PRK15439 353 YLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQ--------- 423 (510)
T ss_pred cCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCC---------
Confidence 0011112211100000000001112234566778888885 3 455668899999999987765543111
Q ss_pred HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.+.+.|++.+
T Consensus 424 ------------lLlLDEPt~gLD~~~~~~l~~~l~~l~ 450 (510)
T PRK15439 424 ------------LLIVDEPTRGVDVSARNDIYQLIRSIA 450 (510)
T ss_pred ------------EEEECCCCcCcChhHHHHHHHHHHHHH
Confidence 245777888888999999999988763
No 359
>PRK13409 putative ATPase RIL; Provisional
Probab=98.41 E-value=4.3e-07 Score=90.89 Aligned_cols=125 Identities=20% Similarity=0.243 Sum_probs=66.3
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchh----hhhccccccHHHHHHHHHHHHHH--HHh--hhhcCC
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE----LLTMWFGESEANVRDIFDKVTME--NFR--YAMGKS 88 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~----l~~~~~g~~~~~i~~~f~~a~~~--~~~--~~~~~~ 88 (299)
.+.+|+.++|+||||+|||||+|+|++.+.+....|.... +...+.|. .+...+...... .+. .+....
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~---~l~~~~~~~~~~~~~~~~~~q~~~~ 171 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGT---ELQNYFKKLYNGEIKVVHKPQYVDL 171 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCCh---HHHHHHHHHhccCcceeecccchhh
Confidence 3578899999999999999999999998876655553211 11111111 111112110000 000 000000
Q ss_pred CchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHH
Q psy13773 89 SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKL 152 (299)
Q Consensus 89 ~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~ 152 (299)
.+. .+ .......+. ..+...++..+++.+++..+ .+....||||++|++...+++.
T Consensus 172 ~p~----~~---~~tv~e~l~-~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~ 228 (590)
T PRK13409 172 IPK----VF---KGKVRELLK-KVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALL 228 (590)
T ss_pred hhh----hh---cchHHHHHH-hhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 000 00 000000000 12334566778888888554 5566899999999998876554
No 360
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.41 E-value=1.3e-07 Score=92.96 Aligned_cols=161 Identities=9% Similarity=0.119 Sum_probs=93.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc---CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG---KS 88 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~---~~ 88 (299)
++|.+.+++.++|+||||||||||+++|++...+ +.+.+++.++.... ....++. ...+.++.. ..
T Consensus 271 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~---~~~~~~~------~i~~v~q~~~~~~~ 341 (501)
T PRK10762 271 VSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRS---PQDGLAN------GIVYISEDRKRDGL 341 (501)
T ss_pred ceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCC---HHHHHHC------CCEEecCccccCCC
Confidence 5677899999999999999999999999998754 55667665543210 0000100 001112111 00
Q ss_pred -CchhhhHHHhhc-CccchhhcC--CCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 89 -SPSALRETIVEV-PNITWEDIG--GLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETEI 162 (299)
Q Consensus 89 -~~~~~~~~l~~l-~~~l~~~~~--r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~ 162 (299)
......+.+... ......... ......+++..+++.+++. ...+....||||++|++....++..-.
T Consensus 342 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p------- 414 (501)
T PRK10762 342 VLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRP------- 414 (501)
T ss_pred cCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCC-------
Confidence 111111221100 000000000 0112234566777888883 345566889999999998776554311
Q ss_pred HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.+.+.|++++
T Consensus 415 --------------~lllLDEPt~~LD~~~~~~l~~~l~~~~ 442 (501)
T PRK10762 415 --------------KVLILDEPTRGVDVGAKKEIYQLINQFK 442 (501)
T ss_pred --------------CEEEEcCCCCCCCHhHHHHHHHHHHHHH
Confidence 1355777888888999999999998874
No 361
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=2.8e-07 Score=82.95 Aligned_cols=157 Identities=13% Similarity=0.186 Sum_probs=84.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-------CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG 86 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-------~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 86 (299)
++|.+.+++.++|.|+||+|||||+++|++...+ +.+.+++.++.... .....++. ...+.++..
T Consensus 26 is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~--~~~~~~~~------~i~~~~q~~ 97 (261)
T PRK14258 26 VSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERR--VNLNRLRR------QVSMVHPKP 97 (261)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccc--cchHHhhc------cEEEEecCC
Confidence 5678899999999999999999999999998653 34455544331100 00000110 001111111
Q ss_pred CCCchhhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCH----H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 87 KSSPSALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDL----N-YIAKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 87 ~~~~~~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l----~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
..-.....+.+... ... ....+ +...++..+++.+++ . .+......||+|+.++++...++..-.+
T Consensus 98 ~l~~~tv~enl~~~-~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~--- 170 (261)
T PRK14258 98 NLFPMSVYDNVAYG-VKI---VGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPK--- 170 (261)
T ss_pred ccCcccHHHHHHHH-HHh---cCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCC---
Confidence 11011111111100 000 00011 123345555555554 2 2344557899999999887665543111
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....++.+.+.|.+.|.+.
T Consensus 171 ------------------vllLDEP~~~LD~~~~~~l~~~l~~l 196 (261)
T PRK14258 171 ------------------VLLMDEPCFGLDPIASMKVESLIQSL 196 (261)
T ss_pred ------------------EEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 24466777777788888888888774
No 362
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.40 E-value=2.9e-07 Score=79.05 Aligned_cols=44 Identities=25% Similarity=0.321 Sum_probs=35.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh----cCCeecccchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l----~~~~i~i~~~~l 57 (299)
++|.+.+++.++|.||||+|||||+++|++.. ..+.+.+++.++
T Consensus 26 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 26 ISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred cEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 45778899999999999999999999999853 345566665443
No 363
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=4.3e-07 Score=88.38 Aligned_cols=151 Identities=15% Similarity=0.178 Sum_probs=85.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
.++.+++++.+.|+|+||||||||++.|++.+. .+.+.+++.++.+.. ...+++.. ...++....-..
T Consensus 340 l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~-------~~~~~k~i---~~v~Q~p~lf~g 409 (559)
T COG4988 340 LNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLS-------PEAWRKQI---SWVSQNPYLFAG 409 (559)
T ss_pred ceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccC-------HHHHHhHe---eeeCCCCccccc
Confidence 467789999999999999999999999999876 466777776664431 11122211 111111111111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH----------H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL----------N-YIAKVTNGFSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l----------~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
+.++.+.- .+....++.+..+++.+.+ + .+...-.++||||.|||....++..-++
T Consensus 410 TireNi~l---------~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~---- 476 (559)
T COG4988 410 TIRENILL---------ARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS---- 476 (559)
T ss_pred cHHHHhhc---------cCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC----
Confidence 22222210 1111122333333333333 2 2445667899999999876554432111
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....+.=|.+.+.++|.+..
T Consensus 477 -----------------l~llDEpTA~LD~etE~~i~~~l~~l~ 503 (559)
T COG4988 477 -----------------LLLLDEPTAHLDAETEQIILQALQELA 503 (559)
T ss_pred -----------------EEEecCCccCCCHhHHHHHHHHHHHHH
Confidence 244666777777777777888777653
No 364
>PLN03130 ABC transporter C family member; Provisional
Probab=98.40 E-value=4.9e-07 Score=99.64 Aligned_cols=150 Identities=17% Similarity=0.203 Sum_probs=88.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+++++.++|+|++|||||||+++|.+... .+.|.||+.++... ....+|..+ .+.++....-..
T Consensus 1258 is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i----~l~~LR~~I------siVpQdp~LF~G 1327 (1622)
T PLN03130 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF----GLMDLRKVL------GIIPQAPVLFSG 1327 (1622)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccC----CHHHHHhcc------EEECCCCccccc
Confidence 567889999999999999999999999999665 46788898887543 112222211 122221111112
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH------------HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN------------YIAKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~------------~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.-. . +..++++...++..++. .+......|||||+|++|.+.++..-.+
T Consensus 1328 TIreNLd~~---------~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~--- 1394 (1622)
T PLN03130 1328 TVRFNLDPF---------N-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSK--- 1394 (1622)
T ss_pred cHHHHhCcC---------C-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCC---
Confidence 222222100 0 01122222233333331 2333445799999999998665442111
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|.....+.-|.+.+.++|++..
T Consensus 1395 ------------------ILILDEATSaLD~~Te~~Iq~~I~~~~ 1421 (1622)
T PLN03130 1395 ------------------ILVLDEATAAVDVRTDALIQKTIREEF 1421 (1622)
T ss_pred ------------------EEEEECCCCCCCHHHHHHHHHHHHHHC
Confidence 244667777888888888999988763
No 365
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.40 E-value=3.9e-07 Score=91.30 Aligned_cols=151 Identities=17% Similarity=0.251 Sum_probs=84.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
.++.+++|+.++|.||+|+|||||++.|++...+ +.+.+++.++... ....++..+ .+.++....-..
T Consensus 354 i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~~~~~i------~~v~q~~~lf~~ 423 (585)
T TIGR01192 354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTV----TRESLRKSI------ATVFQDAGLFNR 423 (585)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhC----CHHHHHhhe------EEEccCCccCcc
Confidence 4567889999999999999999999999997764 5566776655332 111111110 111211111111
Q ss_pred hhhHHHhhc-CccchhhcCCCccHHHHHhhhcccC-----------CHH-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEV-PNITWEDIGGLEGVKRELQELVQDV-----------DLN-YIAKVTNGFSGADLTEICQRACKLAIRQSI 158 (299)
Q Consensus 92 ~~~~~l~~l-~~~l~~~~~r~p~~~~R~~~l~~~v-----------~l~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~ 158 (299)
+.++.+.-. +. . + +++....++.+ +++ .+......+|||++|+++...++..-.+
T Consensus 424 ti~~Ni~~~~~~--------~-~-~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~-- 491 (585)
T TIGR01192 424 SIRENIRLGREG--------A-T-DEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAP-- 491 (585)
T ss_pred cHHHHHhcCCCC--------C-C-HHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC--
Confidence 222222110 00 0 0 11111111111 122 2334456799999999987654443111
Q ss_pred HHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
.+..+|+....+.-+.+.+.++|.+..+
T Consensus 492 -------------------ililDEpts~LD~~~~~~i~~~l~~~~~ 519 (585)
T TIGR01192 492 -------------------ILVLDEATSALDVETEARVKNAIDALRK 519 (585)
T ss_pred -------------------EEEEECCccCCCHHHHHHHHHHHHHHhC
Confidence 2446677788888888999999887743
No 366
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.39 E-value=2.1e-07 Score=103.24 Aligned_cols=154 Identities=15% Similarity=0.159 Sum_probs=93.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
+++.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++.. ....+. +...++++......
T Consensus 949 lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~--------~~~~~r---~~IG~~pQ~~~L~~~ 1017 (2272)
T TIGR01257 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET--------NLDAVR---QSLGMCPQHNILFHH 1017 (2272)
T ss_pred eEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc--------hHHHHh---hcEEEEecCCcCCCC
Confidence 5677899999999999999999999999998754 556677665521 111111 11123333222111
Q ss_pred hhhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
....+.+.-. . .+... .+.++++..+++.+++... .++...||||++|+++...++..-.+
T Consensus 1018 LTV~E~L~f~-~----~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~Pk----------- 1081 (2272)
T TIGR01257 1018 LTVAEHILFY-A----QLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAK----------- 1081 (2272)
T ss_pred CCHHHHHHHH-H----HhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC-----------
Confidence 1222222110 0 01111 2334567788888998554 45668999999999988765554222
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.+.+.|++.+
T Consensus 1082 ----------VLLLDEPTSGLDp~sr~~l~~lL~~l~ 1108 (2272)
T TIGR01257 1082 ----------VVVLDEPTSGVDPYSRRSIWDLLLKYR 1108 (2272)
T ss_pred ----------EEEEECCCcCCCHHHHHHHHHHHHHHh
Confidence 244556666667777777777776664
No 367
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.39 E-value=7.4e-07 Score=79.45 Aligned_cols=153 Identities=16% Similarity=0.129 Sum_probs=91.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.|+++..+++.|+||+||||++|+|.+.+- .+.+.|.+.+-... .+..++.+ .. .+....+-....
T Consensus 43 isf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~----~~~~~~~~----~~-v~gqk~ql~Wdl 113 (325)
T COG4586 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRR----REEYLRSI----GL-VMGQKLQLWWDL 113 (325)
T ss_pred eeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchh----HHHHHHHH----HH-Hhhhhheeeeec
Confidence 678899999999999999999999999999775 45666665543321 11111111 00 011100000000
Q ss_pred hhh---HHHhhcCccchhhcCCCcc--HHHHHhhhcccCCHH-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALR---ETIVEVPNITWEDIGGLEG--VKRELQELVQDVDLN-YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE 165 (299)
Q Consensus 92 ~~~---~~l~~l~~~l~~~~~r~p~--~~~R~~~l~~~v~l~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~ 165 (299)
... .++. .+.+.|+ -++|...+.+-+|++ .|..+...+|-|+..++=..|++.---
T Consensus 114 p~~ds~~v~~--------~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p---------- 175 (325)
T COG4586 114 PALDSLEVLK--------LIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPP---------- 175 (325)
T ss_pred hhhhhHHHHH--------HHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCC----------
Confidence 000 1111 1122343 356777777778884 566777899999988865555332111
Q ss_pred HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.-+..+|+....+++.++.+.+.+++..
T Consensus 176 -----------~VLfLDEpTvgLDV~aq~~ir~Flke~n 203 (325)
T COG4586 176 -----------KVLFLDEPTVGLDVNAQANIREFLKEYN 203 (325)
T ss_pred -----------cEEEecCCccCcchhHHHHHHHHHHHHH
Confidence 1244566777778888888888888764
No 368
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.39 E-value=2.9e-07 Score=93.20 Aligned_cols=161 Identities=12% Similarity=0.148 Sum_probs=91.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|.|+||||||||+++|++...+ +.+.+++.++... ....+..+... ...+.++....-.
T Consensus 27 vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~----~~~~~~~~~~~--~i~~v~q~~~l~~~ 100 (648)
T PRK10535 27 ISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATL----DADALAQLRRE--HFGFIFQRYHLLSH 100 (648)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcC----CHHHHHHHHhc--cEEEEeCCcccCCC
Confidence 5677899999999999999999999999998754 5566776654332 11111111100 0012221111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+.. .. .... ....+.+++...+++.+++.. +......||+|++|++....++..-.
T Consensus 101 ~tv~enl~~-~~-~~~~-~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P-------------- 163 (648)
T PRK10535 101 LTAAQNVEV-PA-VYAG-LERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG-------------- 163 (648)
T ss_pred CCHHHHHHH-HH-HHcC-CCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCC--------------
Confidence 111111111 00 0000 011233455667777788854 45566889999999988665444311
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.+.+.+++.+
T Consensus 164 -------~lLllDEP~~gLD~~s~~~l~~ll~~l~ 191 (648)
T PRK10535 164 -------QVILADEPTGALDSHSGEEVMAILHQLR 191 (648)
T ss_pred -------CEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 1244666777777788888888777653
No 369
>KOG0055|consensus
Probab=98.38 E-value=3.7e-07 Score=95.53 Aligned_cols=47 Identities=19% Similarity=0.429 Sum_probs=40.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTM 60 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~ 60 (299)
.+|.+++|+.++|+||+||||||+++.|.+...+ +.+.+|+.++...
T Consensus 372 ~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~ 420 (1228)
T KOG0055|consen 372 VSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNL 420 (1228)
T ss_pred eEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhc
Confidence 5677899999999999999999999999997764 6688898887654
No 370
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.38 E-value=4.7e-07 Score=81.58 Aligned_cols=57 Identities=25% Similarity=0.519 Sum_probs=48.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHH
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVT 77 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~ 77 (299)
...++|+|||||||||+++++|..+. ..++++++.++.+.+++++...++.+|..+.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~ 105 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL 105 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc
Confidence 45789999999999999999998642 3567889999999999998888888887654
No 371
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.38 E-value=2.3e-07 Score=78.70 Aligned_cols=44 Identities=27% Similarity=0.497 Sum_probs=35.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l 57 (299)
.+|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++
T Consensus 19 i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (178)
T cd03229 19 VSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDL 64 (178)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 4677889999999999999999999999997764 4555665443
No 372
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.38 E-value=2.3e-07 Score=84.66 Aligned_cols=70 Identities=23% Similarity=0.442 Sum_probs=54.9
Q ss_pred cChhhhhcCCCC---CCcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHH
Q psy13773 8 EHPEKFLKFGMQ---PSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVT 77 (299)
Q Consensus 8 ~~p~~~~sl~i~---~~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~ 77 (299)
..++.+..+++. ++..++|+|||||||||++++++..+. .+++++++.++...+.|.+...++.+|+.+.
T Consensus 42 ~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~ 121 (284)
T TIGR02880 42 LVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM 121 (284)
T ss_pred HHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc
Confidence 345566666665 345899999999999999999998663 2578889999988888888778888887764
No 373
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.38 E-value=2.7e-07 Score=83.40 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=34.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG 54 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~ 54 (299)
++|.+.+++.++|.||||+|||||+++|++.+.+ +.+.+++
T Consensus 43 is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g 85 (264)
T PRK13546 43 ISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG 85 (264)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC
Confidence 6778899999999999999999999999998754 4444544
No 374
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.38 E-value=5.2e-07 Score=85.59 Aligned_cols=59 Identities=32% Similarity=0.572 Sum_probs=51.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh-cccc-ccHHHHHHHHHHHHH
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG-ESEANVRDIFDKVTM 78 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~-~~~g-~~~~~i~~~f~~a~~ 78 (299)
++.+++|+||+|||||+++++||..++.+++.+++..+.. .|.| +.+..++.+|..+..
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~ 106 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVK 106 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999987764 6788 567888888887744
No 375
>PLN03140 ABC transporter G family member; Provisional
Probab=98.38 E-value=3.4e-07 Score=99.84 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=89.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC----CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~----~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~ 89 (299)
+++.+.+|+.++|.||||+|||||+++|++.... +.+.+++.++. .. .+.. ...++.+.....
T Consensus 899 vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~-------~~----~~~~--~igyv~Q~d~~~ 965 (1470)
T PLN03140 899 VTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK-------QE----TFAR--ISGYCEQNDIHS 965 (1470)
T ss_pred cEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCC-------hH----Hhhh--heEEEccccccC
Confidence 4667889999999999999999999999997642 33444443321 00 1111 112222221111
Q ss_pred c-hhhhHHHhhcCc-cchhhcCCCccHHHHHhhhcccCCHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 P-SALRETIVEVPN-ITWEDIGGLEGVKRELQELVQDVDLNYIAKVT------NGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 90 ~-~~~~~~l~~l~~-~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t------~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
. ...++.+.-... .+... ....+..++++.+++.+++..++... .++|||++|++....++.+-.+
T Consensus 966 ~~lTV~E~L~~~a~lr~~~~-~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~----- 1039 (1470)
T PLN03140 966 PQVTVRESLIYSAFLRLPKE-VSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPS----- 1039 (1470)
T ss_pred CCCcHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCC-----
Confidence 1 122222211000 00000 00012334677888888887766543 5899999999987765554221
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....+..+...+.+.|++.
T Consensus 1040 ----------------lL~LDEPTsgLD~~~a~~v~~~L~~l 1065 (1470)
T PLN03140 1040 ----------------IIFMDEPTSGLDARAAAIVMRTVRNT 1065 (1470)
T ss_pred ----------------EEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 24466777777888888888888765
No 376
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.38 E-value=2.5e-07 Score=91.27 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=89.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceeccc-chhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVK-GPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~-~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~ 90 (299)
++|.+.+++.++|.||||||||||+++|++.+.+ +.+.++ +.+..... ......... +. ....+.++......
T Consensus 303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~-~~~~~~~~~-~~--~~i~~v~q~~~l~~ 378 (520)
T TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMT-KPGPDGRGR-AK--RYIGILHQEYDLYP 378 (520)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccc-ccchhhHHH-Hh--hhEEEEccCcccCC
Confidence 5677899999999999999999999999998754 445553 22110000 000000000 00 00112221111111
Q ss_pred -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH------HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN------YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIR 163 (299)
Q Consensus 91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~------~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~ 163 (299)
....+.+... ..+. .......+++..+++.+++. .+.+....||||++|+++...++..-.+
T Consensus 379 ~~tv~e~l~~~-~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~------- 447 (520)
T TIGR03269 379 HRTVLDNLTEA-IGLE---LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPR------- 447 (520)
T ss_pred CCcHHHHHHHH-HHcC---CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCC-------
Confidence 1122222110 0000 00111234566777777774 3456678999999999987665543111
Q ss_pred HHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 164 REREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|.+.
T Consensus 448 --------------lLllDEPt~~LD~~~~~~l~~~l~~l 473 (520)
T TIGR03269 448 --------------IVILDEPTGTMDPITKVDVTHSILKA 473 (520)
T ss_pred --------------EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 24466777788888888898888765
No 377
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.37 E-value=3.9e-07 Score=89.04 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=81.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.... .... . .+ ....
T Consensus 43 VSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~---i~~~-----~--------~l------~~~l 100 (549)
T PRK13545 43 ISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL---IAIS-----S--------GL------NGQL 100 (549)
T ss_pred eEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee---EEec-----c--------cc------CCCC
Confidence 5677899999999999999999999999998754 45555543210 0000 0 00 0000
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA 170 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~ 170 (299)
...+.+.. ...... .......+++..+++.+++.. +......||||++++++...++..-.+
T Consensus 101 TV~EnL~l-~~~~~~--~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~-------------- 163 (549)
T PRK13545 101 TGIENIEL-KGLMMG--LTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPD-------------- 163 (549)
T ss_pred cHHHHHHh-hhhhcC--CCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCC--------------
Confidence 11111110 000000 001122344556677777754 445568899999999887665544221
Q ss_pred CCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|.++
T Consensus 164 -------LLLLDEPTsgLD~~sr~~LlelL~el 189 (549)
T PRK13545 164 -------ILVIDEALSVGDQTFTKKCLDKMNEF 189 (549)
T ss_pred -------EEEEECCcccCCHHHHHHHHHHHHHH
Confidence 13345555556666666666666554
No 378
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.37 E-value=2.3e-07 Score=92.17 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=37.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELL 58 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~ 58 (299)
.++.+++++.++|.||+|||||||++.|++...+ +.+.+++.++.
T Consensus 342 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~ 388 (547)
T PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVT 388 (547)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC
Confidence 5677899999999999999999999999997654 56777776654
No 379
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.37 E-value=4.1e-07 Score=77.20 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=27.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 43 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~ 43 (299)
++|.+.+++.+.|.||||||||||+|++..
T Consensus 14 isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 14 LDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 577889999999999999999999999864
No 380
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.37 E-value=1.4e-07 Score=92.79 Aligned_cols=161 Identities=7% Similarity=0.046 Sum_probs=90.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc----C
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG----K 87 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~----~ 87 (299)
++|.+.+++.++|.||||||||||+++|++...+ +.+.+++.++.... ....++. ...+.++.. -
T Consensus 272 isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~---~~~~~~~------~i~~~~q~~~~~~~ 342 (501)
T PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRS---PRDAIRA------GIMLCPEDRKAEGI 342 (501)
T ss_pred eeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCC---HHHHHhC------CCEEcCcCHhhCCC
Confidence 4677899999999999999999999999997653 55666655442110 0000100 001111110 0
Q ss_pred CCchhhhHHHhhcCccc-hh-h-cCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 88 SSPSALRETIVEVPNIT-WE-D-IGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEI 162 (299)
Q Consensus 88 ~~~~~~~~~l~~l~~~l-~~-~-~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~ 162 (299)
.......+.+....... .. . +......++++..++..+++. . .......||||++|+++...++..-.
T Consensus 343 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p------- 415 (501)
T PRK11288 343 IPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDM------- 415 (501)
T ss_pred cCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCC-------
Confidence 00011112111000000 00 0 000112234566778888883 3 45566899999999998776554311
Q ss_pred HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.-+..+|+....++.+.+.+.+.|.+..
T Consensus 416 --------------~lllLDEPt~~LD~~~~~~l~~~l~~l~ 443 (501)
T PRK11288 416 --------------KVILLDEPTRGIDVGAKHEIYNVIYELA 443 (501)
T ss_pred --------------CEEEEcCCCCCCCHhHHHHHHHHHHHHH
Confidence 1245677778888888999998887764
No 381
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.37 E-value=3.5e-07 Score=77.19 Aligned_cols=44 Identities=27% Similarity=0.383 Sum_probs=35.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l 57 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++.++
T Consensus 19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~ 64 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDI 64 (173)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence 5677889999999999999999999999997653 4555665443
No 382
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.36 E-value=8.9e-07 Score=87.11 Aligned_cols=134 Identities=12% Similarity=0.111 Sum_probs=71.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchh--hhh----c-cccccHHHHHHHHHHH-------HHH
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE--LLT----M-WFGESEANVRDIFDKV-------TME 79 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~--l~~----~-~~g~~~~~i~~~f~~a-------~~~ 79 (299)
+++.+.++..++|+|+||+|||||+|+|++...+....|.... -+. . ........+..++... ...
T Consensus 22 ~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~ 101 (530)
T COG0488 22 VSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAEL 101 (530)
T ss_pred CcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHH
Confidence 5677899999999999999999999999998865444332211 000 0 0000001111111110 000
Q ss_pred -HHhhhhcCCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy13773 80 -NFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLA 153 (299)
Q Consensus 80 -~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a 153 (299)
......... .......+......++ .-+.+.|+..++..+++....+....||||+..++..+.++.+
T Consensus 102 ~~~~~~~~~~-~~~~~~~l~~~~~~~~-----~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~ 170 (530)
T COG0488 102 EEAYALLADP-DDELLAELEALLEELD-----GWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLE 170 (530)
T ss_pred HHHHHhcccc-hhHHHHHHHHHHHhhc-----ccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhc
Confidence 000000010 0000111111111111 1345678888888888865566678999999999887766554
No 383
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.36 E-value=7.7e-07 Score=79.99 Aligned_cols=154 Identities=18% Similarity=0.238 Sum_probs=79.4
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchh----hhhccccccHHHHHHHHHHHHHH----HHhhhhcCCC
Q psy13773 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE----LLTMWFGESEANVRDIFDKVTME----NFRYAMGKSS 89 (299)
Q Consensus 18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~----l~~~~~g~~~~~i~~~f~~a~~~----~~~~~~~~~~ 89 (299)
+.+++.++|.||||+|||||+++|++...+....|.... +...+.+.. +...+...... .+..+.....
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSE---LQNYFTKLLEGDVKVIVKPQYVDLI 99 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCch---hhhhhHHhhhcccceeeecchhccC
Confidence 678999999999999999999999998875544442000 000011111 11111100000 0000000000
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.......+.. .+ +......+...+++.+++.. +......||+|+++++....++..-.
T Consensus 100 ~~~~~~~i~~---~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p------------- 158 (255)
T cd03236 100 PKAVKGKVGE---LL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDA------------- 158 (255)
T ss_pred chHHHHHHHH---Hh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCC-------------
Confidence 0011111111 00 11223345567777777744 44566789999999988665443211
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.-+..+|+.....+-+...|.+.+++.
T Consensus 159 --------~illlDEPts~LD~~~~~~l~~~l~~l 185 (255)
T cd03236 159 --------DFYFFDEPSSYLDIKQRLNAARLIREL 185 (255)
T ss_pred --------CEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 124455666666666666677777655
No 384
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.36 E-value=4.3e-07 Score=78.12 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=35.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh--cC--Ceecccchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC--QA--NFISVKGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l--~~--~~i~i~~~~l 57 (299)
.+|.+.+++.++|.||||+|||||+++|++.. .+ +.+.+++.++
T Consensus 28 ~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~ 75 (194)
T cd03213 28 VSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL 75 (194)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeC
Confidence 45678999999999999999999999999987 53 4556665543
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.35 E-value=4.5e-07 Score=78.04 Aligned_cols=184 Identities=16% Similarity=0.212 Sum_probs=117.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK 87 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~ 87 (299)
+++.+..++.-.|+|.+|+|||.++++|++... +.-+.++..++......+ .+.+........|.....-
T Consensus 26 v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~----RRk~ig~~isMIFQeP~sC 101 (330)
T COG4170 26 VSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE----RRKLVGHNVSMIFQEPQSC 101 (330)
T ss_pred eeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH----hhhhhccchhhhhcCchhh
Confidence 466778899999999999999999999999664 334455555665543322 2222222222122222222
Q ss_pred CCchh--hhHHHhhcCccchhhc--CCCccHHHHHhhhcccCCHH----HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 88 SSPSA--LRETIVEVPNITWEDI--GGLEGVKRELQELVQDVDLN----YIAKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 88 ~~~~~--~~~~l~~l~~~l~~~~--~r~p~~~~R~~~l~~~v~l~----~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
.+++. -++.+..+|....... .+.--.+.|+.+++..|+++ -.+.++..++-|+-|.++.+.+.++..|.
T Consensus 102 LDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrL-- 179 (330)
T COG4170 102 LDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRL-- 179 (330)
T ss_pred cChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCce--
Confidence 22222 2255555554332211 12344577888899999883 35677788999999998887766655543
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccCC------CCHHHHHHHHHHHHHH
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRS------VNDADIRKYEMFAQTL 222 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~Ps------Vsw~DIggL~~vk~~i 222 (299)
+..+++.....++|...+..-|.++..+ ..-+|+..+.+|.+.|
T Consensus 180 -------------------LIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i 229 (330)
T COG4170 180 -------------------LIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKI 229 (330)
T ss_pred -------------------EeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhhe
Confidence 3356677777889999988888877543 4457888888888765
No 386
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.35 E-value=3.3e-07 Score=90.68 Aligned_cols=144 Identities=10% Similarity=0.120 Sum_probs=86.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|.||||||||||+++|++.+.+ +.+.+++..-... +++.... .+ ....
T Consensus 338 is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~-----------~~q~~~~-~~------~~~~ 399 (530)
T PRK15064 338 LNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGY-----------YAQDHAY-DF------ENDL 399 (530)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEE-----------Ecccccc-cC------CCCC
Confidence 5678899999999999999999999999997654 3344443111110 0000000 00 0000
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-N-YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
...+.+... .......+++..+++.+++ . .+......||||++++++...++..-.+
T Consensus 400 t~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~------------- 458 (530)
T PRK15064 400 TLFDWMSQW--------RQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPN------------- 458 (530)
T ss_pred cHHHHHHHh--------ccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCC-------------
Confidence 111111100 0011224556677777777 3 4456678999999999987665443111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.+.+.|+++.
T Consensus 459 --------lllLDEPt~~LD~~~~~~l~~~l~~~~ 485 (530)
T PRK15064 459 --------VLVMDEPTNHMDMESIESLNMALEKYE 485 (530)
T ss_pred --------EEEEcCCCCCCCHHHHHHHHHHHHHCC
Confidence 244667777888888888888888763
No 387
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.35 E-value=3.6e-07 Score=99.55 Aligned_cols=156 Identities=13% Similarity=0.111 Sum_probs=91.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-----CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS 88 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-----~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~ 88 (299)
+++.+.+++.++|.||||+|||||+++|++... .+.+.+++.++.. .++. ...+..+....
T Consensus 782 vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~--------~~~~------~i~yv~Q~~~~ 847 (1394)
T TIGR00956 782 VDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS--------SFQR------SIGYVQQQDLH 847 (1394)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh--------hhhc------ceeeecccccC
Confidence 456678999999999999999999999999864 2556677655421 0110 01122221111
Q ss_pred -CchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhc-C----CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 89 -SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVT-N----GFSGADLTEICQRACKLAIRQSIETEI 162 (299)
Q Consensus 89 -~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t-~----glSggDl~~Lv~~A~~~a~~r~~~~~~ 162 (299)
.....++.+.-......+.-....+..++++.+++.+++..+++.. . ++|||++|+++...++..-.+.
T Consensus 848 ~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~----- 922 (1394)
T TIGR00956 848 LPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKL----- 922 (1394)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCe-----
Confidence 1112223322100000000000112345677888888887665443 2 7999999999977655442210
Q ss_pred HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
-+..+|+....+..+...+.+.|++.
T Consensus 923 ---------------iLlLDEPTsgLD~~~~~~i~~~L~~l 948 (1394)
T TIGR00956 923 ---------------LLFLDEPTSGLDSQTAWSICKLMRKL 948 (1394)
T ss_pred ---------------EEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 13466777777788888888888765
No 388
>PLN03232 ABC transporter C family member; Provisional
Probab=98.35 E-value=4.3e-07 Score=99.70 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=88.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
+++.+++|+.++|+|++|||||||+++|.+... .+.|.||+.++... ....+|..+ .+.++....-..
T Consensus 1255 isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i----~~~~lR~~i------~iVpQdp~LF~g 1324 (1495)
T PLN03232 1255 LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKF----GLTDLRRVL------SIIPQSPVLFSG 1324 (1495)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhC----CHHHHHhhc------EEECCCCeeeCc
Confidence 567789999999999999999999999999765 46788898877543 112222211 222221111112
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH------------HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN------------YIAKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~------------~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.-. . .-.++++...++.+++. .+...-..|||||+|++|.+.++..-.+
T Consensus 1325 TIr~NL~~~--------~--~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~--- 1391 (1495)
T PLN03232 1325 TVRFNIDPF--------S--EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSK--- 1391 (1495)
T ss_pred cHHHHcCCC--------C--CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCC---
Confidence 222222100 0 00112222333333332 2233345799999999997655442111
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|.....+.-|.+.+.++|++..
T Consensus 1392 ------------------ILILDEATSaLD~~Te~~Iq~~L~~~~ 1418 (1495)
T PLN03232 1392 ------------------ILVLDEATASVDVRTDSLIQRTIREEF 1418 (1495)
T ss_pred ------------------EEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 244667777888888888999988764
No 389
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.34 E-value=5.9e-07 Score=73.66 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=31.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN 48 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~ 48 (299)
.+|.+.+++.++|.||||+|||||+++|++...+.
T Consensus 19 ~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~ 53 (144)
T cd03221 19 ISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD 53 (144)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 45778999999999999999999999999987643
No 390
>PLN03073 ABC transporter F family; Provisional
Probab=98.34 E-value=1.3e-06 Score=89.34 Aligned_cols=71 Identities=10% Similarity=0.043 Sum_probs=47.5
Q ss_pred cHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCccc
Q psy13773 113 GVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPE 190 (299)
Q Consensus 113 ~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (299)
..+.|+..++..+++. . +......||||+.+++...+++..-.+ .+..+|+....++
T Consensus 319 ~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~---------------------lLlLDEPt~~LD~ 377 (718)
T PLN03073 319 TAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPD---------------------LLLLDEPTNHLDL 377 (718)
T ss_pred hHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCC---------------------EEEEECCCCCCCH
Confidence 4566777788888883 3 445668999999999987765543221 2445566666666
Q ss_pred ccHHHHHHHHHhcc
Q psy13773 191 ITRAHFEEAMRFAR 204 (299)
Q Consensus 191 it~~Df~~AL~~~~ 204 (299)
.+.+.|.+.|+++.
T Consensus 378 ~~~~~l~~~L~~~~ 391 (718)
T PLN03073 378 HAVLWLETYLLKWP 391 (718)
T ss_pred HHHHHHHHHHHHcC
Confidence 66777777766653
No 391
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.34 E-value=5.4e-07 Score=75.63 Aligned_cols=35 Identities=34% Similarity=0.581 Sum_probs=31.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN 48 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~ 48 (299)
++|.+.+++.++|.||||||||||+++|++.+.+.
T Consensus 20 i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 54 (166)
T cd03223 20 LSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG 54 (166)
T ss_pred CeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 56778899999999999999999999999987643
No 392
>PRK13409 putative ATPase RIL; Provisional
Probab=98.34 E-value=3.3e-07 Score=91.75 Aligned_cols=140 Identities=17% Similarity=0.188 Sum_probs=81.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cchh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SPSA 92 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~~~ 92 (299)
.++.+.+++.++|.||||+|||||+|+|++.+.+....|... + .++ +.++.... ....
T Consensus 358 ~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~---~i~-----------------y~~Q~~~~~~~~t 416 (590)
T PRK13409 358 EGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-L---KIS-----------------YKPQYIKPDYDGT 416 (590)
T ss_pred cceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-e---eEE-----------------EecccccCCCCCc
Confidence 356678999999999999999999999999876543332210 1 000 00000000 0011
Q ss_pred hhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13773 93 LRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAG 171 (299)
Q Consensus 93 ~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~ 171 (299)
..+.+.... .. .....+...+++.+++..+ .+....||||++|+++...++..-.+
T Consensus 417 v~e~l~~~~---~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~--------------- 473 (590)
T PRK13409 417 VEDLLRSIT---DD-----LGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDAD--------------- 473 (590)
T ss_pred HHHHHHHHh---hh-----cChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC---------------
Confidence 112211100 00 0112244566777777554 45558899999999987765543111
Q ss_pred CcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 172 NPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+...+.+.|+++
T Consensus 474 ------llLLDEPt~~LD~~~~~~l~~~l~~l 499 (590)
T PRK13409 474 ------LYLLDEPSAHLDVEQRLAVAKAIRRI 499 (590)
T ss_pred ------EEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 24466677777777888888888776
No 393
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.34 E-value=2e-06 Score=84.88 Aligned_cols=146 Identities=20% Similarity=0.201 Sum_probs=84.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSAL 93 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~~ 93 (299)
.++.+++|+.++|.|+||||||||+|+||+.-..+...|....=.. ..|.+++.......+
T Consensus 412 l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~-------------------~lflpQ~PY~p~GtL 472 (604)
T COG4178 412 LNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSA-------------------LLFLPQRPYLPQGTL 472 (604)
T ss_pred ceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCc-------------------eEEecCCCCCCCccH
Confidence 3466789999999999999999999999997765555544220000 023333333333333
Q ss_pred hHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 94 RETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTN-------GFSGADLTEICQRACKLAIRQSIETEIRRER 166 (299)
Q Consensus 94 ~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t~-------glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~ 166 (299)
++.+ .+|..... -.++.+..++..+++.+++.+-+ -+|+|++|+|+-+..+.-
T Consensus 473 re~l-~YP~~~~~------~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~------------- 532 (604)
T COG4178 473 REAL-CYPNAAPD------FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLH------------- 532 (604)
T ss_pred HHHH-hCCCCCCC------CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHc-------------
Confidence 3332 22222110 11334456667777766665543 499999999875432211
Q ss_pred HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccCC
Q psy13773 167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRS 206 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~Ps 206 (299)
...++-.+|.....++=+..-+..++++--|.
T Consensus 533 --------kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~ 564 (604)
T COG4178 533 --------KPKWVFLDEATSALDEETEDRLYQLLKEELPD 564 (604)
T ss_pred --------CCCEEEEecchhccChHHHHHHHHHHHhhCCC
Confidence 11234455555555555666677777775453
No 394
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=8e-07 Score=89.89 Aligned_cols=143 Identities=15% Similarity=0.250 Sum_probs=86.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+|+.++|+||||||||||+++|++...+ +.+.+....-+. |+.... .. .+. ...
T Consensus 331 isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig-y~~Q~~--~~---------~l~------~~~ 392 (638)
T PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLG-YFAQHQ--LE---------FLR------ADE 392 (638)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEE-EecCcc--hh---------hCC------ccc
Confidence 4667899999999999999999999999998754 344443110001 110000 00 000 000
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
.....+..+ .......++..++..+++. .+.+....||||+.++|+...++..-.
T Consensus 393 ~~~~~~~~~---------~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p-------------- 449 (638)
T PRK10636 393 SPLQHLARL---------APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRP-------------- 449 (638)
T ss_pred hHHHHHHHh---------CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCC--------------
Confidence 001111100 0012234566777778873 355666889999999998765443211
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+++....++.+.+.+.++|.++.
T Consensus 450 -------~lLlLDEPt~~LD~~~~~~l~~~L~~~~ 477 (638)
T PRK10636 450 -------NLLLLDEPTNHLDLDMRQALTEALIDFE 477 (638)
T ss_pred -------CEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 1355777888888899999999998874
No 395
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.34 E-value=2.5e-06 Score=70.70 Aligned_cols=133 Identities=17% Similarity=0.270 Sum_probs=75.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh--cCCeecccchhh-hhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC--QANFISVKGPEL-LTMWFGESEANVRDIFDKVTMENFRYAMGKSSP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l--~~~~i~i~~~~l-~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~ 90 (299)
++|....++.+.|.||+|+|||+|+|.|.-.- ..+...|-+..+ .+.. .+++.++.+.+.... .| +.-...+
T Consensus 21 i~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~--~~~k~i~~lr~~vgm-vf--qqy~lwp 95 (242)
T COG4161 21 ITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKT--PSDKAIRDLRRNVGM-VF--QQYNLWP 95 (242)
T ss_pred eeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccC--ccHHHHHHHHHhhhh-hh--hhhccCc
Confidence 45666889999999999999999999988643 234444432221 1111 133555554443221 11 1111111
Q ss_pred -hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhc-CCCCHHHHHHHHHHHHHHH
Q psy13773 91 -SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVT-NGFSGADLTEICQRACKLA 153 (299)
Q Consensus 91 -~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t-~glSggDl~~Lv~~A~~~a 153 (299)
-...+.+.+-|-.... ........|..++++.+.+...|.+- -.+|||+.|+++...+++.
T Consensus 96 hltv~enlieap~kv~g--l~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmm 158 (242)
T COG4161 96 HLTVQENLIEAPCRVLG--LSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred hhHHHHHHHhhhHHHhC--CCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhc
Confidence 1222333332221111 11234456777899999998887655 5899999999887665543
No 396
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.33 E-value=6.5e-07 Score=88.07 Aligned_cols=144 Identities=18% Similarity=0.238 Sum_probs=88.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc-chhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVK-GPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA 92 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~-~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~ 92 (299)
.+|.+.++..|.|+||||+|||||+|.|++.++.....|. +..+.-.|+.+....+ + ....
T Consensus 341 ~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l---~---------------~~~t 402 (530)
T COG0488 341 LSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDEL---D---------------PDKT 402 (530)
T ss_pred ceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhc---C---------------ccCc
Confidence 5677899999999999999999999999998875543332 2222222222211000 0 0001
Q ss_pred hhHHHhhcCccchhhcCCCccH-HHHHhhhcccCCH--HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 93 LRETIVEVPNITWEDIGGLEGV-KRELQELVQDVDL--NYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 93 ~~~~l~~l~~~l~~~~~r~p~~-~~R~~~l~~~v~l--~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.. ..|+. ++.+...+..+.+ +...+....||||+..+|.....+.. .
T Consensus 403 ~~d~l~~----------~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~-~-------------- 457 (530)
T COG0488 403 VLEELSE----------GFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ-P-------------- 457 (530)
T ss_pred HHHHHHh----------hCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhcc-C--------------
Confidence 1111111 01221 3444456667777 44556668899999999886543322 1
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhccCC
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRS 206 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~Ps 206 (299)
...+..+|++...+.-+.+-+++||..+..+
T Consensus 458 ------pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gt 488 (530)
T COG0488 458 ------PNLLLLDEPTNHLDIESLEALEEALLDFEGT 488 (530)
T ss_pred ------CCEEEEcCCCccCCHHHHHHHHHHHHhCCCe
Confidence 1135577788888888899999999999865
No 397
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.33 E-value=3.5e-07 Score=77.80 Aligned_cols=44 Identities=25% Similarity=0.292 Sum_probs=36.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l 57 (299)
+++.+.+++.++|.|+||+|||||+++|++...+ +.+.+++.++
T Consensus 19 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (182)
T cd03215 19 VSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPV 64 (182)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 5677899999999999999999999999998754 5566666544
No 398
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.32 E-value=1e-06 Score=89.02 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=34.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG 54 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~ 54 (299)
++|.+.+++.++|+||||||||||+|+|++...+ +.+.+++
T Consensus 22 is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~ 64 (635)
T PRK11147 22 AELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ 64 (635)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence 5677899999999999999999999999998754 4444443
No 399
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.32 E-value=9.6e-07 Score=89.63 Aligned_cols=146 Identities=17% Similarity=0.216 Sum_probs=80.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC--eecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~--~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
+++.+++++.++|+||+|||||||+++|++..... .+.++...-. .+.++.......
T Consensus 471 isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i---------------------~~v~Q~~~l~~~ 529 (659)
T TIGR00954 471 LSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKL---------------------FYVPQRPYMTLG 529 (659)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcE---------------------EEECCCCCCCCc
Confidence 45678899999999999999999999999976543 3333211000 111111111111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhc----------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVT----------NGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t----------~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
..++.+. ++..... ........+++..+++.+++.++..+. ..||||++|++....++..-.+
T Consensus 530 tv~eni~-~~~~~~~-~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~----- 602 (659)
T TIGR00954 530 TLRDQII-YPDSSED-MKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQ----- 602 (659)
T ss_pred CHHHHHh-cCCChhh-hhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCC-----
Confidence 1112211 1100000 000001133445556666665544332 5699999999987665543221
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.+.+++++.
T Consensus 603 ----------------illLDEpts~LD~~~~~~l~~~l~~~ 628 (659)
T TIGR00954 603 ----------------FAILDECTSAVSVDVEGYMYRLCREF 628 (659)
T ss_pred ----------------EEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 24466777777778888888888764
No 400
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.32 E-value=1.1e-06 Score=96.67 Aligned_cols=150 Identities=13% Similarity=0.107 Sum_probs=88.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+++|+.++|+|++|||||||+++|.+... .+.|.+|+.++... ....+|..+ .+.++....-..
T Consensus 1305 is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i----~~~~LR~~i------~iVpQdp~LF~g 1374 (1522)
T TIGR00957 1305 INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKI----GLHDLRFKI------TIIPQDPVLFSG 1374 (1522)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEcccc----CHHHHHhcC------eEECCCCcccCc
Confidence 567789999999999999999999999999765 47788998887554 122222211 122221111112
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH------------HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN------------YIAKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~------------~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.-.. ... ++.+...++.+++. .+...-..|||||+|++|...++..-.+
T Consensus 1375 TIr~NLdp~~--------~~s--deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~--- 1441 (1522)
T TIGR00957 1375 SLRMNLDPFS--------QYS--DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTK--- 1441 (1522)
T ss_pred cHHHHcCccc--------CCC--HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCC---
Confidence 2222221000 001 11122222222221 1233345699999999997765442111
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|.....+.-|.+.+.++|++..
T Consensus 1442 ------------------ILiLDEaTSalD~~Te~~Iq~~l~~~~ 1468 (1522)
T TIGR00957 1442 ------------------ILVLDEATAAVDLETDNLIQSTIRTQF 1468 (1522)
T ss_pred ------------------EEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 244667777888888888999998764
No 401
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.31 E-value=4.8e-07 Score=88.85 Aligned_cols=159 Identities=10% Similarity=0.039 Sum_probs=89.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc---C
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG---K 87 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~---~ 87 (299)
++|.+.+++.++|.||||||||||+++|++... .+.+.+++.++... .....++. ...+.++.. .
T Consensus 279 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~---~~~~~~~~------~i~~v~q~~~~~~ 349 (500)
T TIGR02633 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIR---NPAQAIRA------GIAMVPEDRKRHG 349 (500)
T ss_pred ceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCC---CHHHHHhC------CCEEcCcchhhCC
Confidence 467789999999999999999999999999865 35566666544211 00000000 001111110 0
Q ss_pred C-CchhhhHHHhh-cCccchhhcCCCc--cHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 88 S-SPSALRETIVE-VPNITWEDIGGLE--GVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 88 ~-~~~~~~~~l~~-l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
. ......+.+.. ....... ..... ..++++..+++.+++. .+.+....||||++|++....++..-.+
T Consensus 350 l~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~----- 423 (500)
T TIGR02633 350 IVPILGVGKNITLSVLKSFCF-KMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPR----- 423 (500)
T ss_pred cCCCCCHHHHhcchhhhhhcc-CCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCC-----
Confidence 0 00111111110 0000000 00111 2234566778888884 2456668899999999987765543111
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.+.+.|++.
T Consensus 424 ----------------lllLDEPt~~LD~~~~~~l~~~l~~l 449 (500)
T TIGR02633 424 ----------------VLILDEPTRGVDVGAKYEIYKLINQL 449 (500)
T ss_pred ----------------EEEEcCCCCCcCHhHHHHHHHHHHHH
Confidence 24466777777888888887777665
No 402
>PTZ00243 ABC transporter; Provisional
Probab=98.31 E-value=1.1e-06 Score=96.68 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=89.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.|.+|+.++|+|++|+|||||+++|.+... .+.|.||+.++... ....+|..+ .+.++....-..
T Consensus 1329 vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i----~l~~LR~~I------~iVpQdp~LF~g 1398 (1560)
T PTZ00243 1329 VSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY----GLRELRRQF------SMIPQDPVLFDG 1398 (1560)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccC----CHHHHHhcc------eEECCCCccccc
Confidence 567789999999999999999999999999765 47788898887653 222233221 222222211122
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH------------HHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY------------IAKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~------------LA~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.-. .... ++.+...++.+++.+ +...-..|||||+|++|...++.. +.
T Consensus 1399 TIreNIdp~--------~~~s--deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~--~~-- 1464 (1560)
T PTZ00243 1399 TVRQNVDPF--------LEAS--SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK--KG-- 1464 (1560)
T ss_pred cHHHHhCcc--------cCCC--HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc--CC--
Confidence 233333110 0011 122333333333321 223335699999999998764432 10
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..-+..+|....++.-|.+.+.++|++..
T Consensus 1465 ----------------~~ILlLDEATSaLD~~te~~Iq~~L~~~~ 1493 (1560)
T PTZ00243 1465 ----------------SGFILMDEATANIDPALDRQIQATVMSAF 1493 (1560)
T ss_pred ----------------CCEEEEeCCCccCCHHHHHHHHHHHHHHC
Confidence 00144667777778888888888888764
No 403
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.30 E-value=9e-07 Score=97.13 Aligned_cols=151 Identities=15% Similarity=0.171 Sum_probs=88.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA 92 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~ 92 (299)
++|.+++|+.++|+|++|+|||||+++|.+... .+.|.||+.++... ....+|..+ .+.++....-..+
T Consensus 1238 is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i----~~~~lR~~i------s~IpQdp~LF~GT 1307 (1490)
T TIGR01271 1238 LSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSV----TLQTWRKAF------GVIPQKVFIFSGT 1307 (1490)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccC----CHHHHHhce------EEEeCCCccCccC
Confidence 457789999999999999999999999999654 46678888777533 112222211 2222222211222
Q ss_pred hhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HH-----------HhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 93 LRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IA-----------KVTNGFSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 93 ~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA-----------~~t~glSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
.++.+. +. . .-.++++..+++.+.+.+ +. ..-..||+|++|++|...++..-.+
T Consensus 1308 IR~NLd-------p~-~--~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~---- 1373 (1490)
T TIGR01271 1308 FRKNLD-------PY-E--QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAK---- 1373 (1490)
T ss_pred HHHHhC-------cc-c--CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCC----
Confidence 333331 10 0 001233334444444422 22 2224599999999997664442111
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
-+..+|....++.-|.+.+.+.|.+..+
T Consensus 1374 -----------------ILlLDEaTS~lD~~Te~~I~~~L~~~~~ 1401 (1490)
T TIGR01271 1374 -----------------ILLLDEPSAHLDPVTLQIIRKTLKQSFS 1401 (1490)
T ss_pred -----------------EEEEeCCcccCCHHHHHHHHHHHHHHcC
Confidence 2446677777788888888888887643
No 404
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.30 E-value=9.4e-07 Score=89.34 Aligned_cols=146 Identities=18% Similarity=0.251 Sum_probs=83.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|+||||||||||+++|++.+.+ +.+.+ +..+.-.|+.... .. -....
T Consensus 338 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~---~~---------------l~~~~ 398 (635)
T PRK11147 338 FSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHR---AE---------------LDPEK 398 (635)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCcc---cc---------------cCCCC
Confidence 4677899999999999999999999999998754 33433 2211000110000 00 00000
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-H-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-N-YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~-~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
...+.+....... .......++..++..+++ . .+.+....||||+.++|+...++..-.
T Consensus 399 tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p-------------- 459 (635)
T PRK11147 399 TVMDNLAEGKQEV-----MVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPS-------------- 459 (635)
T ss_pred CHHHHHHhhcccc-----cccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCC--------------
Confidence 1111111100000 001123345566667776 2 345666889999999998765444311
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.+.++|+++.
T Consensus 460 -------~lLlLDEPt~~LD~~~~~~l~~~l~~~~ 487 (635)
T PRK11147 460 -------NLLILDEPTNDLDVETLELLEELLDSYQ 487 (635)
T ss_pred -------CEEEEcCCCCCCCHHHHHHHHHHHHhCC
Confidence 1244667777777788888888888764
No 405
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.30 E-value=1.2e-06 Score=83.01 Aligned_cols=124 Identities=19% Similarity=0.329 Sum_probs=75.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccc----hhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchhhh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKG----PELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSALR 94 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~----~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~~~ 94 (299)
.+++.+.|.|+||.||||.++.|++++.+++...+. .++...+-| ..++..|.......+ ....-.
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrG---tELq~YF~~l~~g~~-------r~v~K~ 167 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRG---TELQNYFKKLYEGEL-------RAVHKP 167 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhh---hHHHHHHHHHHcCCc-------ceecch
Confidence 567899999999999999999999999998887764 233333222 234445544322111 011111
Q ss_pred HHHhhcCccchhhc---CCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHH
Q psy13773 95 ETIVEVPNITWEDI---GGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKL 152 (299)
Q Consensus 95 ~~l~~l~~~l~~~~---~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~ 152 (299)
+.+..+|..+...+ ...-++..+.+++.+.+++..+ .+....+|||+||+++..|+..
T Consensus 168 QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~ 229 (591)
T COG1245 168 QYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALL 229 (591)
T ss_pred HHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHh
Confidence 33333332222111 1112334456677888888654 5666899999999999888654
No 406
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.30 E-value=1.8e-06 Score=74.63 Aligned_cols=64 Identities=20% Similarity=0.301 Sum_probs=52.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHH
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVT 77 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~ 77 (299)
.++.+..+..+.++|.||+|||||+++||+.+. .+.|.|++.++..+...+....+..+|+...
T Consensus 25 ~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~ 90 (263)
T COG1101 25 LSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPL 90 (263)
T ss_pred CceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchh
Confidence 567889999999999999999999999999775 5778899999987766555666777777543
No 407
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.28 E-value=2.7e-07 Score=85.78 Aligned_cols=142 Identities=15% Similarity=0.195 Sum_probs=76.8
Q ss_pred EEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-hhhhHHHhhcCc
Q psy13773 26 FYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-SALRETIVEVPN 102 (299)
Q Consensus 26 L~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-~~~~~~l~~l~~ 102 (299)
|.||||||||||+|+|++... .+.+.+++.++..... ..+.+ .+.++...... ....+.+.. ..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i----------~~v~q~~~l~~~~tv~enl~~-~~ 67 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHI----------NMVFQSYALFPHMTVEENVAF-GL 67 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE----------EEEecCccccCCCcHHHHHHH-HH
Confidence 579999999999999999765 4566777765532100 00001 11111111111 111111110 00
Q ss_pred cchhhcCCCccHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Q psy13773 103 ITWEDIGGLEGVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMET 181 (299)
Q Consensus 103 ~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (299)
.... ....+..+++..+++.+++.. +.+....||||+.|+++...++..-.+ .+..
T Consensus 68 ~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~---------------------lllL 124 (325)
T TIGR01187 68 KMRK--VPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPK---------------------ILLL 124 (325)
T ss_pred hhcC--CCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCC---------------------EEEE
Confidence 0000 001223456667777788854 445668899999999987665543221 2335
Q ss_pred CCCCCCcccccHHHHHHHHHhc
Q psy13773 182 EDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 182 ~~~~~~~~~it~~Df~~AL~~~ 203 (299)
+|+....++.+.+.|.+.|++.
T Consensus 125 DEP~s~LD~~~~~~l~~~l~~l 146 (325)
T TIGR01187 125 DEPLSALDKKLRDQMQLELKTI 146 (325)
T ss_pred eCCCccCCHHHHHHHHHHHHHH
Confidence 5566666666777777766654
No 408
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.27 E-value=8.5e-07 Score=75.35 Aligned_cols=34 Identities=26% Similarity=0.244 Sum_probs=30.1
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF 49 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~ 49 (299)
+.+.+++.++|.||||+|||||+|+|++...+..
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 53 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG 53 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC
Confidence 5778999999999999999999999999876433
No 409
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.27 E-value=8e-08 Score=86.55 Aligned_cols=51 Identities=6% Similarity=-0.003 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC---CCCcccccCCCCCCCeeee
Q psy13773 210 ADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQS---GGPNSAPANESGTGGILLM 262 (299)
Q Consensus 210 ~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~---k~s~~l~~g~~gtg~~ll~ 262 (299)
+++.||++||+.+.+.+.| +.........|+. ....++||||||||||++-
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~--~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAW--IQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred HHhcChHHHHHHHHHHHHH--HHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHH
Confidence 5788999999999999999 6555444444443 4456899999999999875
No 410
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.7e-07 Score=90.92 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=49.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCC-CCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQ-SGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~-~k~s~~l~~g~~gtg~~ll~ 262 (299)
+..|+..||-|-++.|.++.|-|++ ||.|.-|..-- +---|+||+||||||||||-
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf---Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLA 200 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF---LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLA 200 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH---HhCchhhHhcccccccceeEecCCCCCcHHHH
Confidence 5679999999999999999999998 99999885533 44459999999999999984
No 411
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=1.6e-06 Score=85.80 Aligned_cols=41 Identities=17% Similarity=0.362 Sum_probs=34.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG 54 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~ 54 (299)
++|.+.+++.++|+||||||||||+|+|++.+.+ +.+.+++
T Consensus 20 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~ 62 (530)
T PRK15064 20 ISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP 62 (530)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence 5677899999999999999999999999997754 4455543
No 412
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.26 E-value=9.9e-07 Score=87.84 Aligned_cols=144 Identities=17% Similarity=0.138 Sum_probs=82.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCe--ecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc-CC-C
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF--ISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG-KS-S 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~--i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~-~~-~ 89 (299)
++|.+.+++.++|.||||||||||+++|++...+.. +.+.. .+ .++ +.++.. .. .
T Consensus 343 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~---~i~-----------------~v~q~~~~~~~ 401 (556)
T PRK11819 343 LSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV---KLA-----------------YVDQSRDALDP 401 (556)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce---EEE-----------------EEeCchhhcCC
Confidence 567789999999999999999999999999775433 33321 11 000 000000 00 0
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
.....+.+..... . ........+...++..+++. . +.+....||||++++++...++..-.+
T Consensus 402 ~~tv~e~l~~~~~-~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~----------- 465 (556)
T PRK11819 402 NKTVWEEISGGLD-I----IKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGN----------- 465 (556)
T ss_pred CCCHHHHHHhhcc-c----ccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC-----------
Confidence 0011111111000 0 00011122333566777773 2 456668999999999987665543111
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.+.+.|.++.
T Consensus 466 ----------lllLDEPt~~LD~~~~~~l~~~l~~~~ 492 (556)
T PRK11819 466 ----------VLLLDEPTNDLDVETLRALEEALLEFP 492 (556)
T ss_pred ----------EEEEcCCCCCCCHHHHHHHHHHHHhCC
Confidence 244666777777788888888887763
No 413
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.26 E-value=3.7e-07 Score=89.46 Aligned_cols=161 Identities=9% Similarity=0.065 Sum_probs=89.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC----
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK---- 87 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~---- 87 (299)
++|.+..++.++|+||||||||||+++|++... .+.+.+++.++.... ....++. ...+.++...
T Consensus 267 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~---~~~~~~~------~i~~~~q~~~~~~~ 337 (491)
T PRK10982 267 VSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHN---ANEAINH------GFALVTEERRSTGI 337 (491)
T ss_pred eeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCC---HHHHHHC------CCEEcCCchhhCCc
Confidence 467789999999999999999999999999775 355666665543210 0000000 0011111000
Q ss_pred CCchhhhHH--HhhcCccchh-hcCCCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 88 SSPSALRET--IVEVPNITWE-DIGGLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETEI 162 (299)
Q Consensus 88 ~~~~~~~~~--l~~l~~~l~~-~~~r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~ 162 (299)
......... +..+...... .+.......+++..+++.+++. .+......||||++|+++...++..-.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~------ 411 (491)
T PRK10982 338 YAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPE------ 411 (491)
T ss_pred ccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCC------
Confidence 000000000 0000000000 0000012234555666777773 3566678999999999988654433111
Q ss_pred HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.+.+.+++..
T Consensus 412 ---------------illLDEPt~gLD~~~~~~~~~~l~~l~ 438 (491)
T PRK10982 412 ---------------ILMLDEPTRGIDVGAKFEIYQLIAELA 438 (491)
T ss_pred ---------------EEEEcCCCcccChhHHHHHHHHHHHHH
Confidence 244677778888889999988887653
No 414
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.25 E-value=1.9e-06 Score=94.19 Aligned_cols=44 Identities=27% Similarity=0.493 Sum_probs=36.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecc-cchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISV-KGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i-~~~~l 57 (299)
++|.+++|+.++|+||+|||||||+++|++.+.+ +.+.+ ++.++
T Consensus 404 isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i 450 (1466)
T PTZ00265 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNL 450 (1466)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcch
Confidence 5677899999999999999999999999998764 55667 34555
No 415
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.24 E-value=1.2e-06 Score=87.25 Aligned_cols=144 Identities=17% Similarity=0.163 Sum_probs=81.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC--eecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC-C-C
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK-S-S 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~--~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~-~-~ 89 (299)
++|.+.+++.++|.||||||||||+++|++...+. .+.+.. .+ .++ +.++... . .
T Consensus 341 isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~---~i~-----------------~v~q~~~~~~~ 399 (552)
T TIGR03719 341 LSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV---KLA-----------------YVDQSRDALDP 399 (552)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce---EEE-----------------EEeCCccccCC
Confidence 56778999999999999999999999999987543 333321 11 000 0010000 0 0
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-Y-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
.....+.+..... .........+...+++.+++. . +.+....||||++++++...++..-.+
T Consensus 400 ~~tv~e~l~~~~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~----------- 463 (552)
T TIGR03719 400 NKTVWEEISGGLD-----IIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGN----------- 463 (552)
T ss_pred CCcHHHHHHhhcc-----ccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCC-----------
Confidence 0011111111000 000111122344566777774 2 345668899999999987765543211
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.+.+.|+++.
T Consensus 464 ----------lllLDEPt~~LD~~~~~~l~~~l~~~~ 490 (552)
T TIGR03719 464 ----------VLLLDEPTNDLDVETLRALEEALLEFA 490 (552)
T ss_pred ----------EEEEeCCCCCCCHHHHHHHHHHHHHCC
Confidence 244556666677777777777777653
No 416
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.24 E-value=5.4e-07 Score=89.73 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=30.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
++|.+.+++.++|+||||||||||+++|++.+.+
T Consensus 26 vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p 59 (556)
T PRK11819 26 ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE 59 (556)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5677899999999999999999999999998754
No 417
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.22 E-value=2.2e-06 Score=81.49 Aligned_cols=58 Identities=29% Similarity=0.568 Sum_probs=50.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh-cccc-ccHHHHHHHHHHHHH
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG-ESEANVRDIFDKVTM 78 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~-~~~g-~~~~~i~~~f~~a~~ 78 (299)
+..++|+||+|||||++++.||..++.+++.+++..+.. .|.| ..+..++.+|..|..
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~ 109 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVK 109 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999988875 6888 557888888888753
No 418
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.9e-06 Score=72.98 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=33.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
.+|.+.+++.+-|.||||+|||||+|.||+.+.+...+|
T Consensus 21 L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v 59 (209)
T COG4133 21 LSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV 59 (209)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeE
Confidence 356678999999999999999999999999887654444
No 419
>KOG0055|consensus
Probab=98.21 E-value=2.5e-06 Score=89.48 Aligned_cols=47 Identities=19% Similarity=0.446 Sum_probs=40.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTM 60 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~ 60 (299)
.++.+..|+.+.|+||+||||||++..|-+-.. .+.+.||+.++.+.
T Consensus 1009 l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~l 1057 (1228)
T KOG0055|consen 1009 LSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDL 1057 (1228)
T ss_pred CcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccC
Confidence 456789999999999999999999999999775 57788999888664
No 420
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.21 E-value=5.8e-07 Score=74.49 Aligned_cols=42 Identities=29% Similarity=0.453 Sum_probs=33.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGP 55 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~ 55 (299)
.++.+.+++.++|.|+||+|||||+++|++.+.. +.+++++.
T Consensus 18 ~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~ 61 (157)
T cd00267 18 VSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGK 61 (157)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCE
Confidence 4567789999999999999999999999997754 34455543
No 421
>KOG0056|consensus
Probab=98.21 E-value=1.5e-06 Score=82.95 Aligned_cols=46 Identities=24% Similarity=0.551 Sum_probs=40.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh--cCCeecccchhhhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC--QANFISVKGPELLT 59 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l--~~~~i~i~~~~l~~ 59 (299)
++|.+.+|+.+.|+||+|+||||++|.|-+.. ..+.+.||+.++..
T Consensus 557 isF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrn 604 (790)
T KOG0056|consen 557 ISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRN 604 (790)
T ss_pred ceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHH
Confidence 67888999999999999999999999999965 46778899888754
No 422
>CHL00181 cbbX CbbX; Provisional
Probab=98.20 E-value=1e-07 Score=87.06 Aligned_cols=60 Identities=10% Similarity=0.181 Sum_probs=42.8
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC-CCCC---CCCcccccCCCCCCCeee
Q psy13773 194 AHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPN-QSQS---GGPNSAPANESGTGGILL 261 (299)
Q Consensus 194 ~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~-~~~~---k~s~~l~~g~~gtg~~ll 261 (299)
.++++++... ++|++|+++||+.|.+-+.| ++++.++. .|+. +...+|||||||||||++
T Consensus 12 ~~~~~~~~~l-----~~~l~Gl~~vK~~i~e~~~~---~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~l 75 (287)
T CHL00181 12 TQIQEVLDIL-----DEELVGLAPVKTRIREIAAL---LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTV 75 (287)
T ss_pred cCHHHHHHHH-----HHhcCCcHHHHHHHHHHHHH---HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHH
Confidence 3455555544 56899999999999999888 55665443 2222 233489999999999976
No 423
>KOG0060|consensus
Probab=98.20 E-value=1.7e-06 Score=84.02 Aligned_cols=122 Identities=17% Similarity=0.288 Sum_probs=70.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSAL 93 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~~ 93 (299)
.++.+..+..+||+||+|||||+|+|++++.-...-..+.+..- +.. ..+ .+.+++.-....++
T Consensus 454 Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~-----~~~----~~l-------fflPQrPYmt~GTL 517 (659)
T KOG0060|consen 454 LSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTD-----GGP----KDL-------FFLPQRPYMTLGTL 517 (659)
T ss_pred eeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEeccc-----CCC----Cce-------EEecCCCCccccch
Confidence 35778999999999999999999999999976654444433211 100 011 23344444333344
Q ss_pred hHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhcCC------------CCHHHHHHHHHHHHHHH
Q psy13773 94 RETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNG------------FSGADLTEICQRACKLA 153 (299)
Q Consensus 94 ~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t~g------------lSggDl~~Lv~~A~~~a 153 (299)
++.+.- |...... .+.--..+++...++.+.+..|..++.| +|+|++|+++-+.....
T Consensus 518 RdQvIY-P~~~~~~-~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~ 587 (659)
T KOG0060|consen 518 RDQVIY-PLKAEDM-DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYH 587 (659)
T ss_pred hheeec-cCccccc-cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhc
Confidence 433221 1100000 0111124456666677777777776665 56999999986654443
No 424
>KOG0058|consensus
Probab=98.19 E-value=2.4e-06 Score=85.05 Aligned_cols=47 Identities=26% Similarity=0.469 Sum_probs=40.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTM 60 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~ 60 (299)
.+|.++||+.++|+||+|+||||++..|-+... .+.|.+|+.+|...
T Consensus 487 lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~ 535 (716)
T KOG0058|consen 487 LSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDI 535 (716)
T ss_pred ceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhc
Confidence 567789999999999999999999999999765 46788898887653
No 425
>PLN03073 ABC transporter F family; Provisional
Probab=98.19 E-value=1.3e-06 Score=89.18 Aligned_cols=143 Identities=12% Similarity=0.182 Sum_probs=82.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|+||||||||||+|+|++.+.+ +.+.++...-+.. + ++ .......
T Consensus 528 vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igy-v----------~Q----------~~~~~l~ 586 (718)
T PLN03073 528 LNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAV-F----------SQ----------HHVDGLD 586 (718)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEE-E----------ec----------cccccCC
Confidence 4677889999999999999999999999998764 3333332100000 0 00 0000000
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
.....+..+. ..... ...+++..++..+++. .+ ......||||+.++++...++..-.+
T Consensus 587 ~~~~~~~~~~----~~~~~--~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~------------- 647 (718)
T PLN03073 587 LSSNPLLYMM----RCFPG--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH------------- 647 (718)
T ss_pred cchhHHHHHH----HhcCC--CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCC-------------
Confidence 0000000000 00000 1134556677778884 33 45568899999999987654443111
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.+..+|+....++.+.+.+.++|.++.
T Consensus 648 --------lLLLDEPT~~LD~~s~~~l~~~L~~~~ 674 (718)
T PLN03073 648 --------ILLLDEPSNHLDLDAVEALIQGLVLFQ 674 (718)
T ss_pred --------EEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 244667777777788888888887653
No 426
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.17 E-value=5.2e-07 Score=98.27 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=85.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc------CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ------ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK 87 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~ 87 (299)
+++.+.+|+.++|.||||+|||||+|+|++... .+.+.+++.++.. ....+.. ...+..+...
T Consensus 80 vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~---------~~~~~r~--~i~yv~Q~d~ 148 (1394)
T TIGR00956 80 MDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE---------IKKHYRG--DVVYNAETDV 148 (1394)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHH---------HHhhcCc--eeEEeccccc
Confidence 556788999999999999999999999999752 3456666544321 1000000 0011111111
Q ss_pred CCc-hhhhHHHhhcCccch-hh-c-CCCc--cHHHH-HhhhcccCCHHHHHH------hcCCCCHHHHHHHHHHHHHHHH
Q psy13773 88 SSP-SALRETIVEVPNITW-ED-I-GGLE--GVKRE-LQELVQDVDLNYIAK------VTNGFSGADLTEICQRACKLAI 154 (299)
Q Consensus 88 ~~~-~~~~~~l~~l~~~l~-~~-~-~r~p--~~~~R-~~~l~~~v~l~~LA~------~t~glSggDl~~Lv~~A~~~a~ 154 (299)
.-+ ....+.+.- ...+. +. . .... +..++ .+.+++.+++...+. ...|+|||++|++....++..-
T Consensus 149 ~~~~lTV~E~l~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~ 227 (1394)
T TIGR00956 149 HFPHLTVGETLDF-AARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGG 227 (1394)
T ss_pred cCCCCCHHHHHHH-HHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhC
Confidence 111 112222211 00000 00 0 0011 11223 245677788865543 2468999999999887655442
Q ss_pred HHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 155 RQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 155 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+ .+..+|+....+..+..++.+.|++.
T Consensus 228 p~---------------------vlllDEPTsgLD~~~~~~i~~~L~~l 255 (1394)
T TIGR00956 228 AK---------------------IQCWDNATRGLDSATALEFIRALKTS 255 (1394)
T ss_pred CC---------------------EEEEeCCCCCcCHHHHHHHHHHHHHH
Confidence 22 23456666777777888888887775
No 427
>CHL00181 cbbX CbbX; Provisional
Probab=98.17 E-value=2.2e-06 Score=78.39 Aligned_cols=68 Identities=21% Similarity=0.420 Sum_probs=51.8
Q ss_pred hhhhhcCCCCC---CcEEEEEcCCCChHHHHHHHHHHhhc-------CCeecccchhhhhccccccHHHHHHHHHHHH
Q psy13773 10 PEKFLKFGMQP---SRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGESEANVRDIFDKVT 77 (299)
Q Consensus 10 p~~~~sl~i~~---~~~vLL~Gp~GsGKTtLlr~La~~l~-------~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~ 77 (299)
++.+...++.+ +..++|+|||||||||+++++|..+. .+++++++.++.+.++|++...++.+|+.+.
T Consensus 45 ~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ 122 (287)
T CHL00181 45 DRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM 122 (287)
T ss_pred HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc
Confidence 44555555543 44589999999999999999998653 2478888889988888888777777777643
No 428
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.17 E-value=1.2e-06 Score=71.68 Aligned_cols=129 Identities=14% Similarity=0.239 Sum_probs=70.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCe-----ecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF-----ISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS 88 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~-----i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~ 88 (299)
+++.|.+++.+-|+||+|||||||+..+++.+...| +.++..++... -...+.+..+|+.+-. .+.. +.
T Consensus 21 ~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~l--Pa~qRq~GiLFQD~lL---Fphl-sV 94 (213)
T COG4136 21 VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML--PAAQRQIGILFQDALL---FPHL-SV 94 (213)
T ss_pred eeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecccc--chhhhheeeeeccccc---cccc-cc
Confidence 567889999999999999999999999999876432 33443333211 0112233333432211 0000 00
Q ss_pred CchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy13773 89 SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQS 157 (299)
Q Consensus 89 ~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~ 157 (299)
.. ..+..+|..+.. ..++.-+...++.+.+..+. .-++.+|||+..++....++.|..+.
T Consensus 95 g~----Nl~fAlp~~~KG-----~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~ 155 (213)
T COG4136 95 GQ----NLLFALPATLKG-----NARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKA 155 (213)
T ss_pred cc----ceEEecCccccc-----HHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcce
Confidence 00 111111211111 01111122566777786655 45578999999998877766665443
No 429
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.14 E-value=1.9e-06 Score=72.27 Aligned_cols=37 Identities=27% Similarity=0.391 Sum_probs=33.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFI 50 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i 50 (299)
++|.+.|++.+.|+|.+|+|||||++||+..+.+...
T Consensus 25 vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G 61 (258)
T COG4107 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61 (258)
T ss_pred cceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCC
Confidence 6788999999999999999999999999998875443
No 430
>KOG0927|consensus
Probab=98.13 E-value=1.1e-05 Score=77.94 Aligned_cols=131 Identities=14% Similarity=0.109 Sum_probs=68.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHH-----H----HHhhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTM-----E----NFRYA 84 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~-----~----~~~~~ 84 (299)
+.|.+.+++.+.|+|++||||||++++|++..-+---.++..-+.....-.....+..++..+.. . .+...
T Consensus 94 ~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~ 173 (614)
T KOG0927|consen 94 VTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQA 173 (614)
T ss_pred eeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 56778899999999999999999999999854332112222112121111223344444421111 0 11111
Q ss_pred hcCCCchhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH--HHHHHhcCCCCHHHHHHHHHHHH
Q psy13773 85 MGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL--NYIAKVTNGFSGADLTEICQRAC 150 (299)
Q Consensus 85 ~~~~~~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l--~~LA~~t~glSggDl~~Lv~~A~ 150 (299)
...... ..+..+...++. ......+.|+..++..+.+ +..++.+.+||||+..|+....+
T Consensus 174 ~d~~~~----~~l~~~~~r~~~--~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~ 235 (614)
T KOG0927|consen 174 CDDKEK----DELDELYERLDE--MDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARA 235 (614)
T ss_pred ccchhh----hHHHHHHHHHHh--hCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHH
Confidence 111000 011100000000 1123345566666666666 55678999999999988765443
No 431
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.12 E-value=2.4e-06 Score=85.03 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=33.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceeccc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVK 53 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~ 53 (299)
++|.+.+++.++|+||||||||||+++|++...+ +.+.++
T Consensus 24 is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~ 65 (552)
T TIGR03719 24 ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPA 65 (552)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEec
Confidence 5677899999999999999999999999998653 444443
No 432
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.10 E-value=3e-07 Score=83.90 Aligned_cols=50 Identities=6% Similarity=0.058 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCC-CCCC---CCCcccccCCCCCCCeeee
Q psy13773 210 ADIRKYEMFAQTLQQSRGFGTNFRFPSNPN-QSQS---GGPNSAPANESGTGGILLM 262 (299)
Q Consensus 210 ~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~-~~~~---k~s~~l~~g~~gtg~~ll~ 262 (299)
++++|++++|+.+.+.+.| +++++.+. .|+. .+.+++|+||||||||++-
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~---~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL---LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred HhccCHHHHHHHHHHHHHH---HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHH
Confidence 4689999999999999988 66776544 2332 3458999999999999863
No 433
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.10 E-value=2.3e-06 Score=74.79 Aligned_cols=36 Identities=56% Similarity=0.883 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 56 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~ 56 (299)
-..++||||||+|||||++.||++++..+..+++..
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~ 85 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPA 85 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEeccchh
Confidence 458999999999999999999999999887777644
No 434
>KOG0061|consensus
Probab=98.09 E-value=1.5e-06 Score=87.23 Aligned_cols=150 Identities=18% Similarity=0.262 Sum_probs=87.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-----CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS 88 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-----~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~ 88 (299)
++..+.+++..+|.||+|+|||||+++||+.... +.+.+++..... ..|+... .+..+.+..
T Consensus 49 vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~-----------~~~~~~s--~yV~QdD~l 115 (613)
T KOG0061|consen 49 VSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS-----------RSFRKIS--GYVQQDDVL 115 (613)
T ss_pred cEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch-----------hhhhhee--EEEcccccc
Confidence 3445789999999999999999999999997753 345556522211 1111110 111111111
Q ss_pred -CchhhhHHHhhcCccchhhcCCC------ccHHHHHhhhcccCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHH
Q psy13773 89 -SPSALRETIVEVPNITWEDIGGL------EGVKRELQELVQDVDLNYIAKVTN------GFSGADLTEICQRACKLAIR 155 (299)
Q Consensus 89 -~~~~~~~~l~~l~~~l~~~~~r~------p~~~~R~~~l~~~v~l~~LA~~t~------glSggDl~~Lv~~A~~~a~~ 155 (299)
..-+.++.+.- .+..|+ .+.++|++.++.++++...++.-- |.|||+.+|+....-+.
T Consensus 116 ~~~LTV~EtL~f------~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell--- 186 (613)
T KOG0061|consen 116 LPTLTVRETLRF------SALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELL--- 186 (613)
T ss_pred cccccHHHHHHH------HHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHH---
Confidence 11122222211 111222 345678889999999987775443 69999999988654211
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 156 QSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 156 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+|. -+-.+|+....+..+.....++|++.
T Consensus 187 ---------------~~P~---iLflDEPTSGLDS~sA~~vv~~Lk~l 216 (613)
T KOG0061|consen 187 ---------------TDPS---ILFLDEPTSGLDSFSALQVVQLLKRL 216 (613)
T ss_pred ---------------cCCC---EEEecCCCCCcchhhHHHHHHHHHHH
Confidence 1111 23355666666667777777777665
No 435
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.07 E-value=6.4e-06 Score=77.06 Aligned_cols=51 Identities=29% Similarity=0.577 Sum_probs=41.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHH
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTM 78 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~ 78 (299)
-.+.+|+||||||||||++.||+..+..|..++... ...+.++.+++.++.
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~gvkdlr~i~e~a~~ 98 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARK 98 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------ccHHHHHHHHHHHHH
Confidence 457899999999999999999999999998887422 245678888887754
No 436
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.06 E-value=2.1e-05 Score=70.96 Aligned_cols=170 Identities=13% Similarity=0.112 Sum_probs=88.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHH-----Hhhc------------------CCeecccchhhhhccccccHHHHH
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIA-----NECQ------------------ANFISVKGPELLTMWFGESEANVR 70 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La-----~~l~------------------~~~i~i~~~~l~~~~~g~~~~~i~ 70 (299)
+++.++.+..+.+.|++|||||||++.+. ..++ ...+.||...+.. ....+.....
T Consensus 14 v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~-~~rs~~~ty~ 92 (261)
T cd03271 14 IDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGR-TPRSNPATYT 92 (261)
T ss_pred ceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCC-CCCCcHHHHH
Confidence 45667899999999999999999999662 2211 1134444443322 1222334455
Q ss_pred HHHHHHHHHHHhhhhcCCC--chhhh-----HHHhhcC-ccchhhc---CCCccHHHHHhhhcccCCHHH--HHHhcCCC
Q psy13773 71 DIFDKVTMENFRYAMGKSS--PSALR-----ETIVEVP-NITWEDI---GGLEGVKRELQELVQDVDLNY--IAKVTNGF 137 (299)
Q Consensus 71 ~~f~~a~~~~~~~~~~~~~--~~~~~-----~~l~~l~-~~l~~~~---~r~p~~~~R~~~l~~~v~l~~--LA~~t~gl 137 (299)
.+|+..+. .||..-.... ..... ..+.++. ..+.+++ ...+. ..+...+++.+++.. +.+....|
T Consensus 93 ~~~~~ir~-~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~-~~~~~~~L~~vgL~~l~l~~~~~~L 170 (261)
T cd03271 93 GVFDEIRE-LFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK-IARKLQTLCDVGLGYIKLGQPATTL 170 (261)
T ss_pred HHHHHHHH-hcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh-HHHHHHHHHHcCCchhhhcCccccC
Confidence 56665554 3333211110 00000 0000000 0011110 11122 245556778888865 56667899
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 138 SGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 138 SggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
|+|+.|++....++..- +.....+..+|+.....+.+.+.+.+.|++.+
T Consensus 171 SgGe~QRl~LAraL~~~------------------~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~ 219 (261)
T cd03271 171 SGGEAQRIKLAKELSKR------------------STGKTLYILDEPTTGLHFHDVKKLLEVLQRLV 219 (261)
T ss_pred CHHHHHHHHHHHHHhcC------------------CCCCcEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 99999998866544321 00011244556666666666666767666553
No 437
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.04 E-value=1.2e-05 Score=76.35 Aligned_cols=100 Identities=21% Similarity=0.290 Sum_probs=60.5
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeec-------ccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFIS-------VKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP 90 (299)
Q Consensus 18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~-------i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~ 90 (299)
+..++.+.+.||||.||||+++.||+.+.+.... ....-+...+ ...+++++..+....+ ..
T Consensus 364 i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~----~gtV~~~l~~~~~~~~-------~~ 432 (591)
T COG1245 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDY----DGTVEDLLRSAIRSAF-------GS 432 (591)
T ss_pred eecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCC----CCcHHHHHHHhhhhhc-------cc
Confidence 5678899999999999999999999988765432 1111222221 2234444433221000 00
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKL 152 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~ 152 (299)
+ --..++..-++++.|- +...++|||++|+++..|++.
T Consensus 433 s------------------------~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~ 471 (591)
T COG1245 433 S------------------------YFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALS 471 (591)
T ss_pred c------------------------hhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhc
Confidence 0 0011345567786654 555899999999999887553
No 438
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.00 E-value=7.2e-06 Score=72.12 Aligned_cols=40 Identities=30% Similarity=0.336 Sum_probs=35.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVK 53 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~ 53 (299)
++|.+..++.+.|+|+||+|||||+|.||+.+.+....+.
T Consensus 46 isf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~ 85 (249)
T COG1134 46 ISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVK 85 (249)
T ss_pred ceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEE
Confidence 7888999999999999999999999999998877655544
No 439
>KOG0743|consensus
Probab=97.98 E-value=4.5e-06 Score=79.12 Aligned_cols=47 Identities=30% Similarity=0.521 Sum_probs=40.1
Q ss_pred cChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773 8 EHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKG 54 (299)
Q Consensus 8 ~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~ 54 (299)
...+.|...+..-.++.|||||||||||+++-|||+.+.-..+.+.-
T Consensus 222 k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeL 268 (457)
T KOG0743|consen 222 KGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLEL 268 (457)
T ss_pred hcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeee
Confidence 34567888888888999999999999999999999999877766553
No 440
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.98 E-value=5.1e-06 Score=64.51 Aligned_cols=41 Identities=27% Similarity=0.316 Sum_probs=32.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 58 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~ 58 (299)
+++.+.+++.++|.||||||||||++++. .+.+.+.+.++.
T Consensus 8 vsl~i~~ge~v~I~GpSGsGKSTLl~~l~----~G~i~~~g~di~ 48 (107)
T cd00820 8 VLVDVYGKVGVLITGDSGIGKTELALELI----KRKHRLVGDDNV 48 (107)
T ss_pred eEEEEcCCEEEEEEcCCCCCHHHHHHHhh----CCeEEEeeEeHH
Confidence 45677889999999999999999999987 344566665553
No 441
>KOG0064|consensus
Probab=97.97 E-value=9.2e-06 Score=78.33 Aligned_cols=32 Identities=31% Similarity=0.667 Sum_probs=29.0
Q ss_pred cCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
+|.+.+|..+||.||||||||+|.|.|++.-.
T Consensus 502 tf~i~~G~hLLItGPNGCGKSSLfRILggLWP 533 (728)
T KOG0064|consen 502 TFQIEPGMHLLITGPNGCGKSSLFRILGGLWP 533 (728)
T ss_pred eEEecCCceEEEECCCCccHHHHHHHHhccCc
Confidence 56789999999999999999999999999654
No 442
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.96 E-value=5.3e-06 Score=72.45 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=32.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFI 50 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i 50 (299)
++|.+.+++.++|.||||||||||+++|++...+...
T Consensus 6 vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG 42 (213)
T PRK15177 6 TDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEG 42 (213)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCC
Confidence 5788899999999999999999999999997654433
No 443
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=97.95 E-value=1.6e-06 Score=83.97 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=37.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l 57 (299)
++|.+.+++.+.|+|.||+|||||+|.|++...+ +.+.+++...
T Consensus 27 v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~ 72 (500)
T COG1129 27 VSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPV 72 (500)
T ss_pred ceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEc
Confidence 6788999999999999999999999999997765 5566776554
No 444
>KOG0059|consensus
Probab=97.94 E-value=4.7e-06 Score=87.21 Aligned_cols=158 Identities=16% Similarity=0.204 Sum_probs=102.1
Q ss_pred hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773 13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP 90 (299)
Q Consensus 13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~ 90 (299)
..++.+++++++.|.|+||+||||+.+++.++..+ +.+.+.+.++..... ..++++ ....|++.+....
T Consensus 583 ~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~------~~~~~~---~iGyCPQ~d~l~~ 653 (885)
T KOG0059|consen 583 GLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTD------FQQVRK---QLGYCPQFDALWE 653 (885)
T ss_pred ceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccc------hhhhhh---hcccCCchhhhhh
Confidence 46778999999999999999999999999997754 556666666644211 001111 1144554433222
Q ss_pred h-hhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 S-ALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER 166 (299)
Q Consensus 91 ~-~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~ 166 (299)
. +.++.+.- ...++..| +..+.++.+++.+++.. ..++..-||||++++|....+...-..
T Consensus 654 ~lT~rEhL~~-----~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~---------- 718 (885)
T KOG0059|consen 654 ELTGREHLEF-----YARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPS---------- 718 (885)
T ss_pred hccHHHHHHH-----HHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCC----------
Confidence 2 12222221 11223333 66677788899999944 456668899999999998765543221
Q ss_pred HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
.+..+++....+|.++.++...+.+.+.
T Consensus 719 -----------vi~LDEPstGmDP~arr~lW~ii~~~~k 746 (885)
T KOG0059|consen 719 -----------VILLDEPSTGLDPKARRHLWDIIARLRK 746 (885)
T ss_pred -----------EEEecCCCCCCCHHHHHHHHHHHHHHHh
Confidence 2445566667788889999888888875
No 445
>KOG0989|consensus
Probab=97.94 E-value=6.1e-06 Score=74.70 Aligned_cols=47 Identities=17% Similarity=-0.009 Sum_probs=39.2
Q ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeee
Q psy13773 200 MRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILL 261 (299)
Q Consensus 200 L~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll 261 (299)
-++++| =+.+|+-|-+.|.+.++.++.- +--+.-|||||||||||..
T Consensus 27 teKYrP-kt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTSt 73 (346)
T KOG0989|consen 27 TEKYRP-KTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTST 73 (346)
T ss_pred HHHhCC-CcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHH
Confidence 355677 6678999999999999999865 5567789999999999964
No 446
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=97.94 E-value=3.7e-06 Score=71.71 Aligned_cols=123 Identities=18% Similarity=0.275 Sum_probs=74.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc-hhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG-PELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~-~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~ 90 (299)
.+|.+.+++--.|+||||+||||++.+|.+...+ +.+++++ .+|... .+-.+ |+. .++.+++...-
T Consensus 24 ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~----~e~~I------Ar~-GIGRKFQ~PtV 92 (249)
T COG4674 24 LSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKL----PEHRI------ARA-GIGRKFQKPTV 92 (249)
T ss_pred eEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccC----CHHHH------HHh-ccCccccCCee
Confidence 4667889999999999999999999999998765 4566666 555443 11111 221 23333322211
Q ss_pred ---hhhhHHH---hhcCccchhhc--CCCccHHHHHhhhcccCCHHHHHHhc-CCCCHHHHHHHHH
Q psy13773 91 ---SALRETI---VEVPNITWEDI--GGLEGVKRELQELVQDVDLNYIAKVT-NGFSGADLTEICQ 147 (299)
Q Consensus 91 ---~~~~~~l---~~l~~~l~~~~--~r~p~~~~R~~~l~~~v~l~~LA~~t-~glSggDl~~Lv~ 147 (299)
-..++.+ ......++..+ +...+.+.|++.++..+.+...+... .-+|-|+.|.|-.
T Consensus 93 fe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEI 158 (249)
T COG4674 93 FENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEI 158 (249)
T ss_pred hhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhh
Confidence 1111111 11122223322 23566778899999999997766555 4589999888743
No 447
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.93 E-value=6.2e-05 Score=71.50 Aligned_cols=37 Identities=32% Similarity=0.567 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhh-----cCCeecccchh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPE 56 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l-----~~~~i~i~~~~ 56 (299)
.+..++|+||+|+|||++++.++..+ ...+++++|..
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~ 95 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQI 95 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCc
Confidence 44678999999999999999999876 34567787754
No 448
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.91 E-value=1e-05 Score=71.24 Aligned_cols=152 Identities=14% Similarity=0.241 Sum_probs=89.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
.+|.+++++.+.|.|+||+||||++|+|.+.+.+ +.|.+++..+... +.+ + ..+.+..-...+
T Consensus 21 isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~--------~~~---r---IGyLPEERGLy~k 86 (300)
T COG4152 21 ISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE--------IKN---R---IGYLPEERGLYPK 86 (300)
T ss_pred eeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh--------hhh---h---cccChhhhccCcc
Confidence 5678899999999999999999999999998875 5566666554321 100 0 011221111111
Q ss_pred hhhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCH-HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDL-NYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l-~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
......+.-+ ..+...| +...++..+++.+++ ....++.+.+|-|..|.+---++..
T Consensus 87 ~tv~dql~yl-----a~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisavi--------------- 146 (300)
T COG4152 87 MTVEDQLKYL-----AELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVI--------------- 146 (300)
T ss_pred CcHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHh---------------
Confidence 1111111100 0112233 344555677888877 4455666778878777654332211
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
+.|. .+..+++.+..+||+.+-+.+++.+.+.
T Consensus 147 ---HePe---LlILDEPFSGLDPVN~elLk~~I~~lk~ 178 (300)
T COG4152 147 ---HEPE---LLILDEPFSGLDPVNVELLKDAIFELKE 178 (300)
T ss_pred ---cCCC---EEEecCCccCCChhhHHHHHHHHHHHHh
Confidence 1111 3446677788899999999999988874
No 449
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.90 E-value=8.5e-06 Score=64.08 Aligned_cols=32 Identities=38% Similarity=0.616 Sum_probs=27.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFISVKG 54 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~ 54 (299)
.|+|.|+|||||||+++.||..++..++.++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 47899999999999999999998766655543
No 450
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=97.90 E-value=1e-05 Score=56.48 Aligned_cols=36 Identities=36% Similarity=0.633 Sum_probs=31.8
Q ss_pred CcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Q psy13773 187 PVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTL 222 (299)
Q Consensus 187 ~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i 222 (299)
..++|+.+||++||++++|||+.+||..|++|.++|
T Consensus 26 ~~p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~F 61 (62)
T PF09336_consen 26 KEPPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEF 61 (62)
T ss_dssp -HHHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 335799999999999999999999999999999886
No 451
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.88 E-value=1.4e-05 Score=62.91 Aligned_cols=37 Identities=41% Similarity=0.711 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCC---eecccchhh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPEL 57 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~---~i~i~~~~l 57 (299)
+..++|+||+||||||+++.++..+... .+++++...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 5689999999999999999999988764 677776543
No 452
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.86 E-value=9.7e-06 Score=70.07 Aligned_cols=41 Identities=29% Similarity=0.451 Sum_probs=34.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG 54 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~ 54 (299)
++|.+.+++.++|.||||+|||||+++|++...+ +.+.+++
T Consensus 24 ~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g 66 (204)
T cd03250 24 INLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG 66 (204)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC
Confidence 5567899999999999999999999999997654 4455554
No 453
>PRK08118 topology modulation protein; Reviewed
Probab=97.83 E-value=3.7e-05 Score=64.63 Aligned_cols=32 Identities=19% Similarity=0.423 Sum_probs=29.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFISVKG 54 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~ 54 (299)
.|+|+||+||||||+++.|+..++..++.+|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999988888774
No 454
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.79 E-value=0.00027 Score=67.70 Aligned_cols=38 Identities=34% Similarity=0.506 Sum_probs=30.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhh-----cCCeecccchhhhh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLT 59 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l-----~~~~i~i~~~~l~~ 59 (299)
..++|+||+|+|||+|+++++.++ +..++++++.++..
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~ 179 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN 179 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH
Confidence 468999999999999999999976 34567788776543
No 455
>PLN03130 ABC transporter C family member; Provisional
Probab=97.79 E-value=3.6e-05 Score=85.21 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=32.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF 49 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~ 49 (299)
+++.+++|+.++|+||+|||||||+++|.+++....
T Consensus 636 inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~ 671 (1622)
T PLN03130 636 INLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRS 671 (1622)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCC
Confidence 567789999999999999999999999999887543
No 456
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.78 E-value=5.4e-05 Score=63.67 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=37.5
Q ss_pred cCCCCCCcEEEEEcCCCChHHHHHHHHHHhh-cCCeecccchhhhh
Q psy13773 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLT 59 (299)
Q Consensus 15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l-~~~~i~i~~~~l~~ 59 (299)
+..+..++.+-++||||||||||+-.+|+.. +.+.|.+++.++..
T Consensus 19 S~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~ 64 (248)
T COG4138 19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEA 64 (248)
T ss_pred ccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhH
Confidence 3456788999999999999999999999965 46888888877643
No 457
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.78 E-value=1.9e-05 Score=63.85 Aligned_cols=34 Identities=38% Similarity=0.581 Sum_probs=29.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCeecccchh
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 56 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~ 56 (299)
.|+|+||+|||||++++.+|..++..++.+.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~ 34 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSS 34 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecc
Confidence 4899999999999999999999988887776654
No 458
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.74 E-value=3.4e-05 Score=61.31 Aligned_cols=40 Identities=53% Similarity=0.931 Sum_probs=33.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhhh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL 58 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l~ 58 (299)
..+..++|+||+|+|||++++.++..+ +..++.+++.+..
T Consensus 17 ~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 356789999999999999999999988 6677777766543
No 459
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.74 E-value=4e-05 Score=70.81 Aligned_cols=57 Identities=35% Similarity=0.630 Sum_probs=46.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHH
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKV 76 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a 76 (299)
-.++++|+.||||+|||.|+-.||.++| .+|..++++++++.-+.+++...+. |+++
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa-~Rra 121 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQA-LRRA 121 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHHHH-HHHh
Confidence 4689999999999999999999999998 5789999999988766666554443 4433
No 460
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.72 E-value=3.7e-05 Score=71.74 Aligned_cols=54 Identities=41% Similarity=0.658 Sum_probs=40.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHH
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFD 74 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~ 74 (299)
.++++||.||||||||.|+-+||.+++ .+|..++++++++.-+.+++. +.+.|+
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE~-L~qa~R 104 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTEA-LTQAFR 104 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHHH-HHHHHH
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchHH-HHHHHH
Confidence 589999999999999999999999998 578999999998876665554 333444
No 461
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.72 E-value=3.6e-05 Score=84.97 Aligned_cols=40 Identities=28% Similarity=0.488 Sum_probs=33.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceeccc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVK 53 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~ 53 (299)
+++.+++|+.++|+||+|||||||+++|++++.+ +.+.++
T Consensus 657 isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~ 698 (1522)
T TIGR00957 657 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMK 698 (1522)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEEC
Confidence 4677899999999999999999999999998764 444444
No 462
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.71 E-value=2.3e-05 Score=71.49 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=33.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG 54 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~ 54 (299)
++|.+.+++.++|+|+||+|||||+++|++.+.+ +.+.+++
T Consensus 56 vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g 98 (282)
T cd03291 56 INLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG 98 (282)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 4677899999999999999999999999997754 4455543
No 463
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.70 E-value=4.2e-05 Score=63.79 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVK 53 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~ 53 (299)
.++..|+|+|++||||||+++.||..++..++..+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46778999999999999999999999987766543
No 464
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.69 E-value=2.7e-05 Score=75.08 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=42.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC-eecccchhhhhccccccHHHHHHHHHHH
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN-FISVKGPELLTMWFGESEANVRDIFDKV 76 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~-~i~i~~~~l~~~~~g~~~~~i~~~f~~a 76 (299)
+++.+..++.++|+||+|||||||+|........+ .+.+++.++.+.. ......+|.+|+.-
T Consensus 25 Vsl~i~~GEiv~L~G~SGsGKSTLLr~~l~~~~sGg~I~ldg~~~~~~~-~~ai~~LR~VFQ~f 87 (504)
T TIGR03238 25 FNKELPSSSLLFLCGSSGDGKSEILAENKRKFSEGYEFFLDATHSFSPN-KNAMETLDEIFDGF 87 (504)
T ss_pred CceeecCCCEEEEECCCCCCHHHHHhcCCCCCCCCCEEEECCEECCCCC-HHHHHHHHHHHHhh
Confidence 46778999999999999999999999211122234 4788888776531 12334566666643
No 465
>PRK07261 topology modulation protein; Provisional
Probab=97.66 E-value=9.1e-05 Score=62.48 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=29.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCeecccchh
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 56 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~ 56 (299)
.|+|+|++|||||||++.|+..++...+.+|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 4899999999999999999999888777776443
No 466
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.66 E-value=5.3e-05 Score=72.60 Aligned_cols=46 Identities=33% Similarity=0.546 Sum_probs=39.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh-cccccc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGES 65 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~-~~~g~~ 65 (299)
....++|+||+|||||+++++||..++.+++.+++..+.. .|+|..
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d 153 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGED 153 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccch
Confidence 3468999999999999999999999999999999988753 466654
No 467
>KOG0062|consensus
Probab=97.65 E-value=0.00014 Score=70.08 Aligned_cols=29 Identities=34% Similarity=0.480 Sum_probs=26.5
Q ss_pred cCCCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIAN 43 (299)
Q Consensus 15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~ 43 (299)
++.+..|+...|+|+||+|||||+|+|+.
T Consensus 100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 100 NLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 45667889999999999999999999999
No 468
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.63 E-value=2.4e-05 Score=74.88 Aligned_cols=46 Identities=24% Similarity=0.287 Sum_probs=39.4
Q ss_pred hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhh
Q psy13773 13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELL 58 (299)
Q Consensus 13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~ 58 (299)
-++|.+.+++...|.|.||+|||||+++|.+.+.+ +.+.+++..+.
T Consensus 22 ~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~ 69 (501)
T COG3845 22 DVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVR 69 (501)
T ss_pred ceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEec
Confidence 37888999999999999999999999999998765 56777776653
No 469
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.62 E-value=5.7e-05 Score=83.22 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=33.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG 54 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~ 54 (299)
+++.+++|+.++|.||+|||||||+++|++++.+ +.+.+++
T Consensus 445 i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g 487 (1490)
T TIGR01271 445 ISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG 487 (1490)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 4567889999999999999999999999998764 4444543
No 470
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.62 E-value=4.1e-05 Score=66.27 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=28.5
Q ss_pred hhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 12 ~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
...++.+..++.++|.||||+|||||+|+|+...
T Consensus 16 v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 16 VANDIDMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred ecceEEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3455667778899999999999999999998744
No 471
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.62 E-value=0.00078 Score=67.25 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=30.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc-----CCeecccchhhhhc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELLTM 60 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~-----~~~i~i~~~~l~~~ 60 (299)
.++|||++|+|||+|+++|+..+. ..++++++.++...
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~e 358 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNE 358 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH
Confidence 489999999999999999999763 45678887776543
No 472
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.62 E-value=7.8e-05 Score=69.76 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=37.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcC-------Ceecccc----hhhhhccccccHHHHHHHH
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKG----PELLTMWFGESEANVRDIF 73 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~-------~~i~i~~----~~l~~~~~g~~~~~i~~~f 73 (299)
..+.++|+||||||||||+++|++.+.. .++.+.+ ..+.....+-....++..|
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~p~~~r~~~ 141 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLHLFPDELREDL 141 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcccCCHHHHHHH
Confidence 4578999999999999999999998875 6666665 3333333333344455544
No 473
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.60 E-value=5e-05 Score=68.52 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=32.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccch
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 55 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~ 55 (299)
..+..++|.||+|||||+++++||..++..++.++|.
T Consensus 19 ~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~ 55 (262)
T TIGR02640 19 KSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGD 55 (262)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 3467899999999999999999999999888888664
No 474
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.60 E-value=5.9e-05 Score=67.83 Aligned_cols=38 Identities=50% Similarity=0.760 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l 57 (299)
.-..+||+||||.|||||++.||++++.++-..++.-+
T Consensus 51 ~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l 88 (332)
T COG2255 51 ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL 88 (332)
T ss_pred CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc
Confidence 45689999999999999999999999987766655443
No 475
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.57 E-value=8.2e-05 Score=77.00 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=41.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh---------hccccccHHHHHHHHHHH
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL---------TMWFGESEANVRDIFDKV 76 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~---------~~~~g~~~~~i~~~f~~a 76 (299)
.+..++|+||||||||+++++||+.++..++.+++..+. ..|.|.....+...|..+
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~ 411 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKA 411 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHh
Confidence 456899999999999999999999999888877543321 234555555555555544
No 476
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.57 E-value=4.8e-05 Score=70.33 Aligned_cols=40 Identities=23% Similarity=0.207 Sum_probs=34.8
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57 (299)
Q Consensus 18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l 57 (299)
+..++.++|.|++||||||+++.||..++..++.|++...
T Consensus 61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~ 100 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSH 100 (327)
T ss_pred HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3457789999999999999999999999999988876544
No 477
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00011 Score=69.41 Aligned_cols=47 Identities=17% Similarity=0.398 Sum_probs=40.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTM 60 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~ 60 (299)
.++.+++++.+.++|++|+||||++|.|-+-+. ++.+.+|+.++...
T Consensus 282 isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~v 330 (497)
T COG5265 282 ISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDV 330 (497)
T ss_pred ccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHh
Confidence 567789999999999999999999999999665 57788898887543
No 478
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.55 E-value=7.7e-05 Score=63.01 Aligned_cols=40 Identities=38% Similarity=0.506 Sum_probs=33.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcC----Ceecccchhhhh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLT 59 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~----~~i~i~~~~l~~ 59 (299)
|-..++|+||+|||||.++++||..+.. .++.+|+..+..
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 3457899999999999999999999985 788888887765
No 479
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.54 E-value=7.3e-05 Score=63.76 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=25.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANF 49 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~ 49 (299)
+..++|+||+|||||||+++|+...+..+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~ 30 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQL 30 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeE
Confidence 56799999999999999999999876543
No 480
>PLN03232 ABC transporter C family member; Provisional
Probab=97.54 E-value=5.9e-05 Score=83.18 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=31.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN 48 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~ 48 (299)
+++.+++|+.++|+||+|||||||+++|.+++...
T Consensus 636 inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~ 670 (1495)
T PLN03232 636 INLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA 670 (1495)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc
Confidence 46778999999999999999999999999988653
No 481
>PRK06762 hypothetical protein; Provisional
Probab=97.52 E-value=9.7e-05 Score=61.56 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l 57 (299)
+..++|.|++||||||+++.|+..++.+.+.++...+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~ 38 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV 38 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence 4678999999999999999999998666666664443
No 482
>PRK04195 replication factor C large subunit; Provisional
Probab=97.52 E-value=8.5e-05 Score=72.80 Aligned_cols=37 Identities=41% Similarity=0.750 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l 57 (299)
...++|+||+|+||||+++++|++++..++++++++.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 6789999999999999999999999988888876653
No 483
>PRK13949 shikimate kinase; Provisional
Probab=97.52 E-value=9.8e-05 Score=62.18 Aligned_cols=31 Identities=39% Similarity=0.585 Sum_probs=28.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFISVK 53 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~ 53 (299)
.|+|+|++||||||+++.||..++..++..|
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999998877766
No 484
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.51 E-value=0.00016 Score=69.22 Aligned_cols=45 Identities=33% Similarity=0.558 Sum_probs=37.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh-cccccc
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGES 65 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~-~~~g~~ 65 (299)
...+||+||+|||||+++++||..++.++..+++..+.. .|+|..
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d 161 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGED 161 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccccccc
Confidence 358999999999999999999999998888888877653 466654
No 485
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.49 E-value=2.9e-05 Score=78.58 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 206 SVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 206 sVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.++|+||.|++..+.++.+.+.+ +++|+.|.. +.+-..|+|++||||||||++.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~---~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~ 202 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY---LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 202 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH---hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 48899999999999999999988 677876642 2333468999999999999874
No 486
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=4.1e-05 Score=73.02 Aligned_cols=51 Identities=10% Similarity=-0.060 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 208 NDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 208 sw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.|+||.|.+.+++.|...+.. +..|+..|... .-.++|||||||+|||.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~--~~~~~~~~~~~--l~ha~Lf~Gp~G~GKt~lA 53 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARA--ARADVAAAGSG--MTHAWLFTGPPGSGRSVAA 53 (394)
T ss_pred hhhhccChHHHHHHHHHHHHh--ccccccccCCC--CCeEEEEECCCCCcHHHHH
Confidence 599999999999999999998 77777776543 3467999999999999654
No 487
>KOG0927|consensus
Probab=97.48 E-value=0.0004 Score=67.41 Aligned_cols=147 Identities=16% Similarity=0.175 Sum_probs=81.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSAL 93 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~~ 93 (299)
.+|++.+...+.++||||||||||++.+...+.+....+....-... . .|..-.. .+ ...+...+
T Consensus 409 l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~---------~-~y~Qh~~----e~-ldl~~s~l 473 (614)
T KOG0927|consen 409 LNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKL---------P-RYNQHLA----EQ-LDLDKSSL 473 (614)
T ss_pred hhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccc---------h-hhhhhhH----hh-cCcchhHH
Confidence 34678889999999999999999999999998877666653221110 0 1110000 00 00011111
Q ss_pred hHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13773 94 RETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN--YIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAG 171 (299)
Q Consensus 94 ~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~--~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~ 171 (299)
...+..+++ ..+.+-...++..+++. ........+|.||.++|+-.....-..+
T Consensus 474 e~~~~~~~~---------~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~--------------- 529 (614)
T KOG0927|consen 474 EFMMPKFPD---------EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPH--------------- 529 (614)
T ss_pred HHHHHhccc---------cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCc---------------
Confidence 111111111 12233334566667773 2334457899999998875432221111
Q ss_pred CcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 172 NPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
.+..+++......-+.+-+.+||+++.-
T Consensus 530 ------lLlLDEPtnhLDi~tid~laeaiNe~~G 557 (614)
T KOG0927|consen 530 ------LLLLDEPTNHLDIETIDALAEAINEFPG 557 (614)
T ss_pred ------EEEecCCCcCCCchhHHHHHHHHhccCC
Confidence 1334556666666677778888888753
No 488
>PRK03839 putative kinase; Provisional
Probab=97.48 E-value=9.7e-05 Score=62.49 Aligned_cols=31 Identities=26% Similarity=0.510 Sum_probs=27.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFISVK 53 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~ 53 (299)
.|+|+|+|||||||+++.||..++..++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4889999999999999999999998877665
No 489
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.47 E-value=0.00013 Score=61.51 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVK 53 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~ 53 (299)
++.++|.|+|||||||+++.|+..++..++.++
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~ 34 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFG 34 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccC
Confidence 568999999999999999999998876555443
No 490
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.47 E-value=6.6e-05 Score=60.64 Aligned_cols=23 Identities=43% Similarity=0.852 Sum_probs=21.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhhc
Q psy13773 24 VLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 24 vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
|+++|+|||||||+++.++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999999887
No 491
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00014 Score=61.16 Aligned_cols=53 Identities=23% Similarity=0.428 Sum_probs=38.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME 79 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~ 79 (299)
..+.|+|++|+||||+.|.||..++.+|+..| .+.....+ ..+..+|..-...
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D--~~Ie~~~g---~sI~eIF~~~GE~ 55 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD--QEIEKRTG---MSIAEIFEEEGEE 55 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch--HHHHHHHC---cCHHHHHHHHhHH
Confidence 45899999999999999999999999998776 22222222 3466677654443
No 492
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.45 E-value=0.0001 Score=63.57 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=28.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
.++.+.++ .++|+||||+|||||+++|+..++.
T Consensus 16 ~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~ 48 (197)
T cd03278 16 TTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGE 48 (197)
T ss_pred eeeecCCC-cEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45567777 8999999999999999999987753
No 493
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.45 E-value=0.00012 Score=63.96 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=32.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchhhh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELL 58 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~l~ 58 (299)
..+..++|+||+|||||+++++++.... ..+++++|.++.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 4567899999999999999999998763 456778877664
No 494
>PRK06217 hypothetical protein; Validated
Probab=97.45 E-value=0.00012 Score=62.26 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=27.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFISVK 53 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~ 53 (299)
.|+|.|++||||||+++.|+..++..++..|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999988777665
No 495
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.45 E-value=0.00014 Score=61.68 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l 57 (299)
.++.++|+|+|||||||++++|++.++.. .+++.++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~--~i~gd~~ 37 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAK--FIDGDDL 37 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCE--EECCccc
Confidence 46789999999999999999999988764 4454443
No 496
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.44 E-value=0.00012 Score=68.02 Aligned_cols=35 Identities=51% Similarity=0.736 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKG 54 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~ 54 (299)
+...++|+||+|+|||++++++|.+++..+..+++
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~ 84 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSG 84 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEec
Confidence 35689999999999999999999999876655544
No 497
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.43 E-value=0.00014 Score=71.71 Aligned_cols=34 Identities=38% Similarity=0.601 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
.+.+.++|+||+||||||++++||.+++..+.+.
T Consensus 43 ~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 43 SPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred CCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 3456888999999999999999999999877665
No 498
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.43 E-value=9.1e-05 Score=63.23 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=30.0
Q ss_pred hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
|..+.+..+..++|.||+||||||++++|++.+..
T Consensus 17 ~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 17 YLWLAVEARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 34456788999999999999999999999997754
No 499
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.00015 Score=67.96 Aligned_cols=61 Identities=21% Similarity=0.316 Sum_probs=47.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHH
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTM 78 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~ 78 (299)
+++.++.|+.|.|+|.|||||||+++.+-+... .+.|.+|+..+..+ +...-|.+|.....
T Consensus 342 iNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e----~ledYR~LfSavFs 404 (546)
T COG4615 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAE----QLEDYRKLFSAVFS 404 (546)
T ss_pred eeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCC----CHHHHHHHHHHHhh
Confidence 567789999999999999999999999999765 46677787766443 45556666665443
No 500
>PF13173 AAA_14: AAA domain
Probab=97.41 E-value=0.00016 Score=57.82 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPEL 57 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l 57 (299)
++.++|+||+||||||+++.++..+. ...+++++.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP 40 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence 46799999999999999999998776 66777776554
Done!