Query psy13773
Match_columns 299
No_of_seqs 271 out of 2382
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 20:09:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 7.1E-44 2.4E-48 360.5 8.7 246 2-262 219-528 (806)
2 3cf2_A TER ATPase, transitiona 100.0 3.1E-32 1.1E-36 275.6 3.0 224 1-229 491-769 (806)
3 4b4t_J 26S protease regulatory 100.0 2.9E-30 9.9E-35 242.5 8.4 174 2-205 163-391 (405)
4 1ypw_A Transitional endoplasmi 100.0 9.6E-30 3.3E-34 259.9 9.9 245 3-262 220-528 (806)
5 4b4t_M 26S protease regulatory 100.0 9.3E-29 3.2E-33 235.1 13.5 177 2-208 196-427 (434)
6 4b4t_I 26S protease regulatory 100.0 1.3E-29 4.5E-34 239.0 5.8 181 2-212 197-432 (437)
7 4b4t_L 26S protease subunit RP 99.9 2.9E-28 9.8E-33 231.9 10.6 179 2-210 196-429 (437)
8 4b4t_H 26S protease regulatory 99.9 4.6E-28 1.6E-32 230.4 10.7 174 2-205 224-452 (467)
9 4b4t_K 26S protease regulatory 99.9 2.5E-27 8.7E-32 225.0 11.1 178 2-209 187-421 (428)
10 1xwi_A SKD1 protein; VPS4B, AA 99.9 8.5E-25 2.9E-29 201.3 14.4 221 2-223 27-319 (322)
11 3cf0_A Transitional endoplasmi 99.9 5.2E-24 1.8E-28 194.1 17.3 216 2-222 30-300 (301)
12 2x8a_A Nuclear valosin-contain 99.9 1.8E-24 6.3E-29 194.8 11.3 192 2-212 25-273 (274)
13 2qp9_X Vacuolar protein sortin 99.9 1.6E-23 5.5E-28 195.2 14.8 221 3-224 67-352 (355)
14 3eie_A Vacuolar protein sortin 99.9 4.9E-23 1.7E-27 189.3 13.4 222 2-224 33-319 (322)
15 1ypw_A Transitional endoplasmi 99.9 1E-24 3.6E-29 222.7 1.7 223 2-229 492-769 (806)
16 2zan_A Vacuolar protein sortin 99.9 2.8E-23 9.7E-28 199.0 10.9 220 3-223 150-441 (444)
17 3hu3_A Transitional endoplasmi 99.9 1.8E-22 6.1E-27 195.5 11.5 197 3-217 220-484 (489)
18 3d8b_A Fidgetin-like protein 1 99.8 1.7E-19 5.7E-24 168.1 10.7 202 3-223 100-354 (357)
19 3b9p_A CG5977-PA, isoform A; A 99.8 1.7E-19 6E-24 162.9 9.3 204 3-225 37-294 (297)
20 2ce7_A Cell division protein F 99.8 4.3E-18 1.5E-22 163.9 14.1 192 7-239 35-296 (476)
21 2dhr_A FTSH; AAA+ protein, hex 99.7 2.6E-18 8.9E-23 166.3 9.6 192 7-239 50-311 (499)
22 3vfd_A Spastin; ATPase, microt 99.7 7.8E-18 2.7E-22 158.4 10.8 204 3-225 131-387 (389)
23 3h4m_A Proteasome-activating n 99.7 2.1E-17 7.1E-22 148.3 11.7 188 3-220 33-277 (285)
24 1lv7_A FTSH; alpha/beta domain 99.7 1.4E-16 4.8E-21 141.0 14.8 168 7-204 31-253 (257)
25 1ixz_A ATP-dependent metallopr 99.7 1.9E-16 6.6E-21 139.9 12.8 163 8-200 36-253 (254)
26 4b4t_J 26S protease regulatory 99.6 2.3E-18 7.8E-23 161.8 -5.6 57 204-262 142-199 (405)
27 2qz4_A Paraplegin; AAA+, SPG7, 99.6 4.1E-16 1.4E-20 137.8 9.1 169 7-205 25-251 (262)
28 1iy2_A ATP-dependent metallopr 99.6 1.3E-15 4.5E-20 136.6 12.5 163 8-200 60-277 (278)
29 4b4t_H 26S protease regulatory 99.6 2.8E-17 9.4E-22 156.4 -6.0 57 204-262 203-260 (467)
30 4b4t_M 26S protease regulatory 99.6 4.1E-17 1.4E-21 155.1 -4.9 57 204-262 175-232 (434)
31 4b4t_I 26S protease regulatory 99.6 4.9E-17 1.7E-21 153.4 -4.7 56 205-262 177-233 (437)
32 4b4t_L 26S protease subunit RP 99.6 4.1E-17 1.4E-21 155.2 -5.7 56 204-261 175-231 (437)
33 2r62_A Cell division protease 99.5 2.1E-16 7.3E-21 140.5 -2.2 171 7-207 30-257 (268)
34 4b4t_K 26S protease regulatory 99.5 8E-17 2.7E-21 152.9 -5.6 57 204-262 166-223 (428)
35 1xwi_A SKD1 protein; VPS4B, AA 99.4 1.8E-14 6.2E-19 132.2 -2.4 57 204-262 6-62 (322)
36 1r6b_X CLPA protein; AAA+, N-t 99.3 3.3E-12 1.1E-16 129.6 9.7 60 18-77 204-275 (758)
37 3t15_A Ribulose bisphosphate c 99.3 9E-12 3.1E-16 112.7 9.7 62 16-77 31-92 (293)
38 3pxi_A Negative regulator of g 99.2 5.4E-12 1.9E-16 128.1 5.2 56 19-77 199-264 (758)
39 2x8a_A Nuclear valosin-contain 99.2 2.3E-13 7.8E-18 122.2 -4.4 57 204-262 4-61 (274)
40 3eie_A Vacuolar protein sortin 99.2 6E-13 2E-17 121.9 -2.3 58 203-262 11-68 (322)
41 2qp9_X Vacuolar protein sortin 99.2 5.1E-13 1.7E-17 124.1 -3.3 65 196-262 37-101 (355)
42 2zan_A Vacuolar protein sortin 99.2 1.1E-12 3.8E-17 125.4 -3.1 63 198-262 122-184 (444)
43 3aji_B S6C, proteasome (prosom 99.1 1.6E-11 5.5E-16 90.2 3.5 64 121-215 19-82 (83)
44 3cf0_A Transitional endoplasmi 99.1 5.2E-13 1.8E-17 121.2 -5.7 57 204-262 9-66 (301)
45 3tui_C Methionine import ATP-b 99.1 6.9E-12 2.4E-16 116.6 0.4 160 14-204 47-210 (366)
46 2krk_A 26S protease regulatory 99.1 5.7E-11 1.9E-15 87.9 5.3 66 111-206 10-84 (86)
47 4g1u_C Hemin import ATP-bindin 99.1 2.5E-11 8.7E-16 108.4 1.9 161 14-204 30-194 (266)
48 3vlf_B 26S protease regulatory 99.1 1.5E-10 5.2E-15 86.0 5.8 60 120-209 18-77 (88)
49 3rlf_A Maltose/maltodextrin im 99.1 2.4E-11 8.2E-16 113.6 1.6 155 14-204 22-180 (381)
50 3tif_A Uncharacterized ABC tra 99.1 2.5E-11 8.4E-16 106.5 0.9 162 14-203 24-191 (235)
51 3fvq_A Fe(3+) IONS import ATP- 99.0 3.6E-11 1.2E-15 111.6 0.7 155 14-202 23-183 (359)
52 3kw6_A 26S protease regulatory 99.0 4.8E-10 1.6E-14 81.2 5.9 65 111-205 2-75 (78)
53 1qvr_A CLPB protein; coiled co 99.0 8.2E-10 2.8E-14 113.6 9.1 60 19-78 189-260 (854)
54 2pcj_A ABC transporter, lipopr 99.0 4.6E-11 1.6E-15 104.0 -0.4 159 14-204 23-187 (224)
55 2qi9_C Vitamin B12 import ATP- 99.0 2.2E-10 7.7E-15 101.2 3.4 159 14-204 19-180 (249)
56 1b0u_A Histidine permease; ABC 99.0 1.7E-10 5.8E-15 102.8 2.6 163 14-204 25-200 (262)
57 1z47_A CYSA, putative ABC-tran 99.0 5.5E-11 1.9E-15 110.3 -0.9 152 14-203 34-191 (355)
58 3gfo_A Cobalt import ATP-bindi 99.0 7.4E-11 2.5E-15 105.9 -0.1 159 14-204 27-190 (275)
59 2olj_A Amino acid ABC transpor 99.0 9.6E-11 3.3E-15 104.4 0.7 158 14-204 43-206 (263)
60 2ff7_A Alpha-hemolysin translo 98.9 2.5E-10 8.6E-15 100.8 3.3 150 14-203 28-191 (247)
61 2yyz_A Sugar ABC transporter, 98.9 6.8E-11 2.3E-15 109.9 -0.7 152 14-203 22-179 (359)
62 2it1_A 362AA long hypothetical 98.9 7.2E-11 2.5E-15 109.8 -0.9 152 14-203 22-179 (362)
63 1oxx_K GLCV, glucose, ABC tran 98.9 8.8E-11 3E-15 108.9 -0.3 155 14-204 24-187 (353)
64 1g6h_A High-affinity branched- 98.9 9.9E-11 3.4E-15 103.9 -0.3 160 14-203 26-199 (257)
65 1g29_1 MALK, maltose transport 98.9 8.9E-11 3E-15 109.6 -0.8 154 14-203 22-185 (372)
66 1v43_A Sugar-binding transport 98.9 7.4E-11 2.5E-15 110.1 -1.4 153 14-203 30-187 (372)
67 3b9p_A CG5977-PA, isoform A; A 98.9 3.9E-11 1.3E-15 107.9 -3.5 56 205-262 16-71 (297)
68 3d8b_A Fidgetin-like protein 1 98.9 7E-11 2.4E-15 109.7 -2.2 57 204-262 78-134 (357)
69 3nh6_A ATP-binding cassette SU 98.9 4.5E-10 1.5E-14 102.2 3.1 151 14-204 73-237 (306)
70 2onk_A Molybdate/tungstate ABC 98.9 1.9E-10 6.4E-15 101.2 0.3 151 14-203 18-172 (240)
71 1ji0_A ABC transporter; ATP bi 98.9 2.6E-10 8.9E-15 100.2 0.6 157 14-204 25-186 (240)
72 2ixe_A Antigen peptide transpo 98.9 1.9E-10 6.3E-15 103.0 -0.8 155 14-204 38-203 (271)
73 3d31_A Sulfate/molybdate ABC t 98.9 1.5E-10 5.2E-15 107.1 -1.5 151 14-203 19-173 (348)
74 2ihy_A ABC transporter, ATP-bi 98.9 1.5E-10 5.2E-15 104.0 -1.4 160 14-203 40-207 (279)
75 3gd7_A Fusion complex of cysti 98.8 4.6E-10 1.6E-14 105.4 1.2 120 14-153 40-172 (390)
76 2dzn_B 26S protease regulatory 98.8 8.1E-10 2.8E-14 80.8 2.1 64 121-214 16-80 (82)
77 1vpl_A ABC transporter, ATP-bi 98.8 3.6E-10 1.2E-14 100.3 0.1 154 14-204 34-193 (256)
78 2qz4_A Paraplegin; AAA+, SPG7, 98.8 1.9E-10 6.4E-15 101.2 -2.2 55 205-262 1-56 (262)
79 1mv5_A LMRA, multidrug resista 98.8 6.6E-10 2.3E-14 97.8 1.3 152 14-204 21-186 (243)
80 2ghi_A Transport protein; mult 98.8 1.3E-09 4.4E-14 96.9 3.2 150 14-203 39-201 (260)
81 1sgw_A Putative ABC transporte 98.8 4E-10 1.4E-14 97.4 -0.2 149 14-203 28-179 (214)
82 2yz2_A Putative ABC transporte 98.8 6.5E-10 2.2E-14 99.1 0.9 152 14-203 26-184 (266)
83 2zu0_C Probable ATP-dependent 98.8 7.8E-10 2.7E-14 98.7 1.3 161 14-204 39-211 (267)
84 2d2e_A SUFC protein; ABC-ATPas 98.8 4.2E-10 1.4E-14 99.5 -0.5 161 14-204 22-190 (250)
85 3h4m_A Proteasome-activating n 98.8 9E-11 3.1E-15 104.8 -5.7 57 204-262 11-68 (285)
86 2nq2_C Hypothetical ABC transp 98.8 6.5E-10 2.2E-14 98.5 -0.1 148 14-204 24-175 (253)
87 3b5x_A Lipid A export ATP-bind 98.8 5.7E-09 1.9E-13 102.9 5.9 152 14-204 362-527 (582)
88 2pjz_A Hypothetical protein ST 98.7 1.1E-09 3.8E-14 97.5 0.3 147 14-204 24-175 (263)
89 3b60_A Lipid A export ATP-bind 98.7 5.9E-09 2E-13 102.8 4.9 151 14-203 362-526 (582)
90 3vfd_A Spastin; ATPase, microt 98.7 8.2E-10 2.8E-14 103.5 -2.5 56 205-262 110-165 (389)
91 3qf4_B Uncharacterized ABC tra 98.7 8.2E-09 2.8E-13 102.1 4.1 151 14-204 374-538 (598)
92 4a82_A Cystic fibrosis transme 98.7 6.3E-09 2.2E-13 102.5 3.2 151 14-204 360-524 (578)
93 2yl4_A ATP-binding cassette SU 98.7 7.1E-09 2.4E-13 102.5 3.3 154 14-204 363-530 (595)
94 1lv7_A FTSH; alpha/beta domain 98.6 1.8E-09 6.1E-14 95.1 -2.8 56 204-262 6-62 (257)
95 3hu3_A Transitional endoplasmi 98.6 7.2E-10 2.4E-14 107.1 -5.9 56 205-262 199-255 (489)
96 3qf4_A ABC transporter, ATP-bi 98.6 1.4E-08 4.7E-13 100.3 3.1 151 14-204 362-526 (587)
97 2c9o_A RUVB-like 1; hexameric 98.6 4.8E-08 1.7E-12 93.4 6.1 59 17-76 59-119 (456)
98 3uk6_A RUVB-like 2; hexameric 98.6 1.5E-07 5.1E-12 86.7 8.8 41 19-59 68-110 (368)
99 1g41_A Heat shock protein HSLU 98.6 4E-08 1.4E-12 93.4 5.0 74 6-79 34-110 (444)
100 4akg_A Glutathione S-transfera 98.5 6.9E-08 2.4E-12 108.4 7.3 41 18-58 642-682 (2695)
101 2r62_A Cell division protease 98.5 6.3E-10 2.2E-14 98.5 -7.6 56 204-262 5-61 (268)
102 3j16_B RLI1P; ribosome recycli 98.5 5.2E-08 1.8E-12 96.4 3.8 164 17-204 99-268 (608)
103 4f4c_A Multidrug resistance pr 98.4 1.1E-07 3.8E-12 101.8 5.3 151 14-204 437-601 (1321)
104 3cmw_A Protein RECA, recombina 98.4 7.2E-09 2.5E-13 111.9 -4.4 56 206-263 1016-1100(1706)
105 2ce7_A Cell division protein F 98.4 7.9E-09 2.7E-13 99.4 -3.7 56 204-262 10-66 (476)
106 4f4c_A Multidrug resistance pr 98.4 7.9E-08 2.7E-12 103.0 2.4 154 14-205 1098-1265(1321)
107 3ozx_A RNAse L inhibitor; ATP 98.4 8E-08 2.7E-12 93.8 1.7 141 15-203 288-431 (538)
108 3g5u_A MCG1178, multidrug resi 98.4 1.5E-07 5.2E-12 100.5 3.8 151 14-204 409-573 (1284)
109 2dhr_A FTSH; AAA+ protein, hex 98.3 2.1E-08 7.2E-13 96.9 -2.9 55 205-262 26-81 (499)
110 3syl_A Protein CBBX; photosynt 98.3 5.2E-07 1.8E-11 81.0 6.0 58 20-77 66-130 (309)
111 1ixz_A ATP-dependent metallopr 98.3 1.1E-08 3.7E-13 89.8 -5.6 57 203-262 9-66 (254)
112 3ozx_A RNAse L inhibitor; ATP 98.3 1.5E-07 5E-12 91.9 1.7 34 19-52 23-56 (538)
113 1yqt_A RNAse L inhibitor; ATP- 98.3 2.3E-07 7.9E-12 90.6 2.4 138 17-203 308-447 (538)
114 1yqt_A RNAse L inhibitor; ATP- 98.2 1E-07 3.4E-12 93.2 -0.7 35 17-51 43-77 (538)
115 3g5u_A MCG1178, multidrug resi 98.2 3E-07 1E-11 98.2 2.6 153 14-204 1052-1218(1284)
116 3bk7_A ABC transporter ATP-bin 98.2 2.6E-07 8.9E-12 91.4 1.7 35 17-51 113-147 (607)
117 3bk7_A ABC transporter ATP-bin 98.2 2.9E-07 9.9E-12 91.1 1.9 138 17-203 378-517 (607)
118 3hws_A ATP-dependent CLP prote 98.2 7.5E-07 2.6E-11 82.3 4.4 56 20-75 50-107 (363)
119 1zp6_A Hypothetical protein AT 98.2 7.9E-07 2.7E-11 74.1 4.2 41 17-57 5-45 (191)
120 3ec2_A DNA replication protein 98.2 9.1E-07 3.1E-11 73.3 3.6 35 12-46 29-63 (180)
121 3bos_A Putative DNA replicatio 98.2 7E-06 2.4E-10 70.2 9.2 38 20-57 51-91 (242)
122 1htw_A HI0065; nucleotide-bind 98.2 1.2E-06 4.1E-11 71.8 4.0 45 14-58 26-71 (158)
123 1d2n_A N-ethylmaleimide-sensit 98.1 2.9E-06 1E-10 75.0 6.2 60 18-77 61-121 (272)
124 1jbk_A CLPB protein; beta barr 98.1 3.8E-06 1.3E-10 68.8 5.9 56 19-74 41-108 (195)
125 3vaa_A Shikimate kinase, SK; s 98.1 2.2E-06 7.6E-11 72.3 3.9 40 14-53 18-57 (199)
126 2pze_A Cystic fibrosis transme 98.0 1.4E-06 5E-11 75.6 2.5 41 14-54 27-69 (229)
127 1ofh_A ATP-dependent HSL prote 98.0 5.1E-06 1.8E-10 74.2 6.0 55 20-74 49-105 (310)
128 1iy2_A ATP-dependent metallopr 98.0 1E-07 3.5E-12 84.9 -5.3 55 205-262 35-90 (278)
129 1z6g_A Guanylate kinase; struc 98.0 2.4E-06 8.3E-11 73.4 3.4 38 14-52 16-53 (218)
130 2cbz_A Multidrug resistance-as 98.0 1.4E-06 4.8E-11 76.1 1.9 41 14-54 24-66 (237)
131 3m6a_A ATP-dependent protease 98.0 2.8E-06 9.6E-11 83.0 4.1 38 20-57 107-144 (543)
132 2c9o_A RUVB-like 1; hexameric 98.0 2.3E-07 7.7E-12 88.7 -3.8 51 203-262 30-80 (456)
133 3j16_B RLI1P; ribosome recycli 98.0 1.8E-06 6.1E-11 85.4 2.5 28 22-49 379-406 (608)
134 2iw3_A Elongation factor 3A; a 98.0 4.9E-06 1.7E-10 86.0 5.6 136 14-202 454-593 (986)
135 2p65_A Hypothetical protein PF 98.0 6.1E-06 2.1E-10 67.6 5.0 40 19-58 41-90 (187)
136 2z4s_A Chromosomal replication 98.0 2.1E-05 7E-10 74.8 9.1 39 21-59 130-173 (440)
137 1g41_A Heat shock protein HSLU 97.9 6E-07 2.1E-11 85.4 -2.8 62 191-262 4-67 (444)
138 1um8_A ATP-dependent CLP prote 97.9 1.1E-05 3.8E-10 74.7 5.7 55 20-74 71-127 (376)
139 3tr0_A Guanylate kinase, GMP k 97.9 7E-06 2.4E-10 69.0 3.9 31 16-46 2-32 (205)
140 1znw_A Guanylate kinase, GMP k 97.9 7E-06 2.4E-10 69.7 3.8 31 16-46 15-45 (207)
141 2bbs_A Cystic fibrosis transme 97.9 3.6E-06 1.2E-10 75.8 1.9 41 14-54 57-99 (290)
142 3ux8_A Excinuclease ABC, A sub 97.9 2.6E-06 8.7E-11 85.3 0.6 25 14-38 37-61 (670)
143 4eun_A Thermoresistant glucoki 97.8 1.1E-05 3.7E-10 68.0 4.4 37 19-57 27-63 (200)
144 3c8u_A Fructokinase; YP_612366 97.8 8E-06 2.7E-10 69.4 3.5 40 18-57 19-63 (208)
145 4gp7_A Metallophosphoesterase; 97.8 7.8E-06 2.7E-10 67.4 3.0 29 14-42 2-30 (171)
146 2jeo_A Uridine-cytidine kinase 97.8 1.1E-05 3.7E-10 70.4 3.9 34 14-47 18-51 (245)
147 3co5_A Putative two-component 97.8 4.9E-06 1.7E-10 66.5 1.5 40 20-60 26-65 (143)
148 2kjq_A DNAA-related protein; s 97.8 1.1E-05 3.6E-10 65.3 3.3 38 20-57 35-75 (149)
149 3n70_A Transport activator; si 97.8 1.3E-05 4.3E-10 64.2 3.8 41 19-60 22-65 (145)
150 2v9p_A Replication protein E1; 97.8 1.3E-05 4.4E-10 72.6 4.2 36 14-50 119-154 (305)
151 1l8q_A Chromosomal replication 97.8 1.1E-05 3.6E-10 73.2 3.7 41 20-60 36-79 (324)
152 3uie_A Adenylyl-sulfate kinase 97.8 1.2E-05 4.1E-10 67.8 3.4 40 18-57 22-64 (200)
153 3ux8_A Excinuclease ABC, A sub 97.8 2.7E-05 9.2E-10 77.9 6.4 29 14-42 341-369 (670)
154 3pxg_A Negative regulator of g 97.8 1.8E-05 6E-10 75.9 4.9 56 19-77 199-264 (468)
155 3te6_A Regulatory protein SIR3 97.8 1.8E-05 6.2E-10 72.0 4.7 40 19-58 43-92 (318)
156 1qhx_A CPT, protein (chloramph 97.7 2E-05 6.7E-10 64.7 4.3 33 21-53 3-35 (178)
157 1kag_A SKI, shikimate kinase I 97.7 1.4E-05 4.8E-10 65.3 3.2 30 21-50 4-33 (173)
158 3lnc_A Guanylate kinase, GMP k 97.7 9.4E-06 3.2E-10 70.0 2.3 32 14-45 20-52 (231)
159 2eyu_A Twitching motility prot 97.7 1.8E-05 6.1E-10 70.0 4.1 45 10-54 14-61 (261)
160 1sxj_A Activator 1 95 kDa subu 97.7 2E-05 6.7E-10 76.4 4.7 40 20-59 76-115 (516)
161 1in4_A RUVB, holliday junction 97.7 1.8E-05 6.3E-10 72.2 4.1 31 21-51 51-81 (334)
162 2ehv_A Hypothetical protein PH 97.7 2.3E-05 8E-10 67.6 4.3 27 17-43 26-52 (251)
163 3pfi_A Holliday junction ATP-d 97.7 2.4E-05 8.3E-10 71.0 4.3 38 20-57 54-91 (338)
164 3syl_A Protein CBBX; photosynt 97.7 9.3E-07 3.2E-11 79.4 -5.2 51 209-262 30-84 (309)
165 1y63_A LMAJ004144AAA protein; 97.7 2.1E-05 7.3E-10 65.4 3.4 38 15-52 4-42 (184)
166 1knq_A Gluconate kinase; ALFA/ 97.7 2.9E-05 9.8E-10 63.7 4.0 37 19-57 6-42 (175)
167 4a74_A DNA repair and recombin 97.7 2.1E-05 7.1E-10 67.1 3.2 30 16-45 20-49 (231)
168 1lvg_A Guanylate kinase, GMP k 97.7 2.5E-05 8.5E-10 66.0 3.7 28 19-46 2-29 (198)
169 2rhm_A Putative kinase; P-loop 97.6 3.2E-05 1.1E-09 64.1 4.0 35 18-52 2-36 (193)
170 4fcw_A Chaperone protein CLPB; 97.6 3E-05 1E-09 69.3 4.2 37 21-57 47-86 (311)
171 3a00_A Guanylate kinase, GMP k 97.6 2.8E-05 9.6E-10 64.8 3.7 26 21-46 1-26 (186)
172 2j41_A Guanylate kinase; GMP, 97.6 3E-05 1E-09 65.1 3.8 29 17-45 2-30 (207)
173 3trf_A Shikimate kinase, SK; a 97.6 3.1E-05 1.1E-09 64.0 3.8 33 21-53 5-37 (185)
174 2w58_A DNAI, primosome compone 97.6 3.5E-05 1.2E-09 64.6 4.0 36 22-57 55-93 (202)
175 3b9q_A Chloroplast SRP recepto 97.6 3E-05 1E-09 70.1 3.7 44 14-57 93-138 (302)
176 1ye8_A Protein THEP1, hypothet 97.6 3.5E-05 1.2E-09 64.1 3.7 24 23-46 2-25 (178)
177 1s96_A Guanylate kinase, GMP k 97.6 3.8E-05 1.3E-09 66.2 3.9 30 17-46 12-41 (219)
178 3asz_A Uridine kinase; cytidin 97.6 3.6E-05 1.2E-09 65.0 3.6 28 19-46 4-31 (211)
179 3pvs_A Replication-associated 97.6 6.3E-05 2.2E-09 71.6 5.7 49 22-77 51-99 (447)
180 3b85_A Phosphate starvation-in 97.6 1.1E-05 3.9E-10 68.9 0.3 34 18-52 19-52 (208)
181 3cmw_A Protein RECA, recombina 97.6 7.5E-05 2.6E-09 81.1 6.6 62 18-79 1079-1159(1706)
182 3nwj_A ATSK2; P loop, shikimat 97.6 1.9E-05 6.6E-10 69.5 1.7 39 14-52 38-79 (250)
183 1svm_A Large T antigen; AAA+ f 97.6 4.5E-05 1.5E-09 71.1 4.2 37 15-51 163-199 (377)
184 3vkg_A Dynein heavy chain, cyt 97.6 7.7E-05 2.6E-09 85.0 6.7 56 2-58 584-641 (3245)
185 3euj_A Chromosome partition pr 97.6 4.2E-05 1.4E-09 73.4 4.0 44 14-58 23-68 (483)
186 2pez_A Bifunctional 3'-phospho 97.5 5.4E-05 1.9E-09 62.3 4.1 39 19-57 3-44 (179)
187 3kb2_A SPBC2 prophage-derived 97.5 5.9E-05 2E-09 61.2 4.2 31 23-53 3-33 (173)
188 2bdt_A BH3686; alpha-beta prot 97.5 4.2E-05 1.4E-09 63.5 3.4 36 21-57 2-37 (189)
189 1kgd_A CASK, peripheral plasma 97.5 5.1E-05 1.8E-09 62.8 3.8 27 20-46 4-30 (180)
190 2bjv_A PSP operon transcriptio 97.5 5.7E-05 1.9E-09 66.2 4.3 39 20-58 28-69 (265)
191 2p5t_B PEZT; postsegregational 97.5 5.4E-05 1.9E-09 66.3 3.9 40 18-57 29-68 (253)
192 2r44_A Uncharacterized protein 97.5 4.1E-05 1.4E-09 69.4 3.2 34 21-54 46-79 (331)
193 1hqc_A RUVB; extended AAA-ATPa 97.5 4.3E-05 1.5E-09 68.7 3.3 38 20-57 37-74 (324)
194 2og2_A Putative signal recogni 97.5 4.9E-05 1.7E-09 70.3 3.6 44 14-57 150-195 (359)
195 2obl_A ESCN; ATPase, hydrolase 97.5 9E-05 3.1E-09 68.2 5.4 35 16-50 66-100 (347)
196 3iij_A Coilin-interacting nucl 97.5 5.7E-05 1.9E-09 62.2 3.6 35 19-53 9-43 (180)
197 1lw7_A Transcriptional regulat 97.5 5.8E-05 2E-09 69.8 4.1 38 12-49 159-198 (365)
198 3t61_A Gluconokinase; PSI-biol 97.5 6.9E-05 2.4E-09 63.0 4.2 31 21-51 18-48 (202)
199 1n0w_A DNA repair protein RAD5 97.5 6.5E-05 2.2E-09 64.5 4.0 29 16-44 19-47 (243)
200 1g8p_A Magnesium-chelatase 38 97.5 7.7E-06 2.6E-10 74.4 -2.0 45 204-262 18-62 (350)
201 1sxj_A Activator 1 95 kDa subu 97.5 6.5E-06 2.2E-10 79.8 -2.6 60 200-262 30-94 (516)
202 2cvh_A DNA repair and recombin 97.5 9.4E-05 3.2E-09 62.5 4.8 38 17-54 16-53 (220)
203 2bbw_A Adenylate kinase 4, AK4 97.5 7.6E-05 2.6E-09 64.9 4.3 29 20-48 26-54 (246)
204 3aez_A Pantothenate kinase; tr 97.5 7.2E-05 2.5E-09 67.9 4.1 30 18-47 87-116 (312)
205 2yhs_A FTSY, cell division pro 97.5 5.8E-05 2E-09 72.5 3.7 43 14-56 286-330 (503)
206 1cr0_A DNA primase/helicase; R 97.5 7E-05 2.4E-09 66.9 4.0 33 14-46 28-60 (296)
207 3tau_A Guanylate kinase, GMP k 97.4 9.4E-05 3.2E-09 62.8 4.4 29 19-47 6-34 (208)
208 2gza_A Type IV secretion syste 97.4 3.1E-05 1.1E-09 71.7 1.5 42 12-53 166-209 (361)
209 1gvn_B Zeta; postsegregational 97.4 8.3E-05 2.8E-09 66.6 4.2 39 19-57 31-69 (287)
210 2qby_B CDC6 homolog 3, cell di 97.4 7.1E-05 2.4E-09 68.8 3.8 38 20-57 44-92 (384)
211 3cm0_A Adenylate kinase; ATP-b 97.4 6.1E-05 2.1E-09 62.2 3.0 32 20-51 3-34 (186)
212 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.0001 3.6E-09 62.5 4.5 29 17-45 19-47 (235)
213 2qby_A CDC6 homolog 1, cell di 97.4 6.6E-05 2.3E-09 68.6 3.5 38 19-56 43-86 (386)
214 2ze6_A Isopentenyl transferase 97.4 9.3E-05 3.2E-09 64.9 4.2 32 23-54 3-34 (253)
215 2v1u_A Cell division control p 97.4 5.8E-05 2E-09 69.1 3.0 39 19-57 42-89 (387)
216 2npi_A Protein CLP1; CLP1-PCF1 97.4 5.1E-05 1.7E-09 72.6 2.7 41 14-54 131-175 (460)
217 2dpy_A FLII, flagellum-specifi 97.4 9.7E-05 3.3E-09 70.2 4.6 35 16-50 152-186 (438)
218 3jvv_A Twitching mobility prot 97.4 6E-05 2E-09 69.7 2.9 37 10-46 112-148 (356)
219 1via_A Shikimate kinase; struc 97.4 7.1E-05 2.4E-09 61.4 3.0 30 23-52 6-35 (175)
220 2ewv_A Twitching motility prot 97.4 7.6E-05 2.6E-09 69.4 3.5 37 10-46 125-161 (372)
221 1tue_A Replication protein E1; 97.4 8.7E-05 3E-09 63.3 3.5 32 17-48 54-85 (212)
222 1ofh_A ATP-dependent HSL prote 97.4 1.4E-05 4.9E-10 71.2 -1.5 62 191-262 4-67 (310)
223 4e22_A Cytidylate kinase; P-lo 97.4 0.0001 3.6E-09 64.5 4.1 31 19-49 25-55 (252)
224 2iyv_A Shikimate kinase, SK; t 97.4 8.7E-05 3E-09 61.2 3.3 32 22-53 3-34 (184)
225 2c95_A Adenylate kinase 1; tra 97.4 9.6E-05 3.3E-09 61.3 3.5 34 19-52 7-40 (196)
226 1jjv_A Dephospho-COA kinase; P 97.4 0.00014 4.8E-09 61.2 4.5 28 22-50 3-30 (206)
227 1cke_A CK, MSSA, protein (cyti 97.4 0.00012 4.1E-09 62.3 4.1 30 21-50 5-34 (227)
228 2cdn_A Adenylate kinase; phosp 97.4 0.00012 4.1E-09 61.4 4.0 33 20-52 19-51 (201)
229 2qt1_A Nicotinamide riboside k 97.4 0.0001 3.5E-09 62.1 3.6 34 17-50 17-51 (207)
230 2i3b_A HCR-ntpase, human cance 97.3 0.0001 3.4E-09 62.0 3.4 34 21-55 1-35 (189)
231 3m6a_A ATP-dependent protease 97.3 1.3E-05 4.6E-10 78.1 -2.4 48 207-262 78-125 (543)
232 3kta_A Chromosome segregation 97.3 0.0001 3.5E-09 60.7 3.3 32 15-47 21-52 (182)
233 1tev_A UMP-CMP kinase; ploop, 97.3 0.0001 3.5E-09 60.9 3.3 31 21-51 3-33 (196)
234 2pt7_A CAG-ALFA; ATPase, prote 97.3 3.3E-05 1.1E-09 70.7 0.3 42 14-55 164-207 (330)
235 1kht_A Adenylate kinase; phosp 97.3 0.0001 3.4E-09 60.8 3.2 26 21-46 3-28 (192)
236 3umf_A Adenylate kinase; rossm 97.3 0.00015 5.2E-09 62.3 4.3 41 16-58 24-64 (217)
237 1zuh_A Shikimate kinase; alpha 97.3 0.00012 4.2E-09 59.4 3.6 33 21-53 7-39 (168)
238 1tf7_A KAIC; homohexamer, hexa 97.3 0.00011 3.6E-09 71.4 3.7 43 14-56 31-78 (525)
239 3u61_B DNA polymerase accessor 97.3 0.0001 3.5E-09 66.5 3.3 37 20-56 47-83 (324)
240 1fnn_A CDC6P, cell division co 97.3 0.00013 4.5E-09 66.9 4.1 35 23-57 46-84 (389)
241 1pzn_A RAD51, DNA repair and r 97.3 0.00011 3.9E-09 67.6 3.6 32 14-45 124-155 (349)
242 1ly1_A Polynucleotide kinase; 97.3 0.0001 3.5E-09 60.2 2.9 27 21-47 2-29 (181)
243 1aky_A Adenylate kinase; ATP:A 97.3 0.00013 4.5E-09 62.1 3.6 33 20-52 3-35 (220)
244 1rj9_A FTSY, signal recognitio 97.3 0.00014 4.8E-09 65.8 3.9 38 20-57 101-140 (304)
245 1u0j_A DNA replication protein 97.3 2.5E-05 8.4E-10 69.3 -1.1 21 243-263 102-122 (267)
246 3pfi_A Holliday junction ATP-d 97.3 1.7E-05 5.7E-10 72.1 -2.3 52 201-262 21-72 (338)
247 2if2_A Dephospho-COA kinase; a 97.3 0.00011 3.9E-09 61.5 3.0 29 23-52 3-31 (204)
248 2qm8_A GTPase/ATPase; G protei 97.3 0.00017 5.9E-09 66.0 4.3 33 14-46 48-80 (337)
249 3ney_A 55 kDa erythrocyte memb 97.3 0.00018 6.1E-09 61.0 4.0 32 15-46 13-44 (197)
250 3lw7_A Adenylate kinase relate 97.3 0.00013 4.5E-09 58.9 3.1 30 22-52 2-31 (179)
251 1zd8_A GTP:AMP phosphotransfer 97.3 0.00014 4.7E-09 62.4 3.3 34 19-52 5-38 (227)
252 2qag_B Septin-6, protein NEDD5 97.3 0.00011 3.8E-09 69.4 2.8 32 13-44 32-65 (427)
253 2chg_A Replication factor C sm 97.3 3.8E-05 1.3E-09 64.3 -0.3 47 201-262 9-55 (226)
254 1qf9_A UMP/CMP kinase, protein 97.3 0.00017 5.9E-09 59.4 3.8 33 20-52 5-37 (194)
255 2bwj_A Adenylate kinase 5; pho 97.2 0.00014 4.9E-09 60.4 3.2 32 20-51 11-42 (199)
256 1sxj_D Activator 1 41 kDa subu 97.2 2E-05 6.8E-10 71.7 -2.3 47 201-262 29-75 (353)
257 1tue_A Replication protein E1; 97.2 3.1E-05 1.1E-09 66.0 -1.0 21 241-261 54-74 (212)
258 1sq5_A Pantothenate kinase; P- 97.2 0.00021 7.1E-09 64.5 4.2 28 19-46 78-105 (308)
259 1e6c_A Shikimate kinase; phosp 97.2 0.00014 4.9E-09 59.0 2.9 31 22-52 3-33 (173)
260 3uk6_A RUVB-like 2; hexameric 97.2 1.1E-05 3.8E-10 74.1 -4.3 52 202-262 36-87 (368)
261 1zak_A Adenylate kinase; ATP:A 97.2 0.00015 5E-09 61.9 3.1 32 20-51 4-35 (222)
262 2vli_A Antibiotic resistance p 97.2 0.00016 5.4E-09 59.4 3.1 31 20-50 4-34 (183)
263 2iw3_A Elongation factor 3A; a 97.2 7.9E-05 2.7E-09 77.1 1.4 37 14-50 692-728 (986)
264 2qor_A Guanylate kinase; phosp 97.2 0.0002 6.8E-09 60.3 3.7 30 17-46 8-37 (204)
265 2qgz_A Helicase loader, putati 97.2 0.0002 6.9E-09 64.7 3.9 37 21-57 152-192 (308)
266 2chq_A Replication factor C sm 97.2 3.7E-05 1.2E-09 68.7 -1.0 46 202-262 10-55 (319)
267 1ojl_A Transcriptional regulat 97.2 0.00018 6.3E-09 64.8 3.6 40 19-58 23-65 (304)
268 1ukz_A Uridylate kinase; trans 97.2 0.00022 7.6E-09 59.7 3.8 34 19-52 13-46 (203)
269 1rz3_A Hypothetical protein rb 97.2 0.00026 9E-09 59.6 4.3 30 17-46 18-47 (201)
270 2chg_A Replication factor C sm 97.2 0.00021 7.1E-09 59.7 3.6 24 22-45 39-62 (226)
271 3t15_A Ribulose bisphosphate c 97.2 5.6E-05 1.9E-09 67.8 0.0 22 241-262 32-53 (293)
272 3sop_A Neuronal-specific septi 97.2 0.00018 6.3E-09 63.8 3.3 25 23-47 4-28 (270)
273 2ga8_A Hypothetical 39.9 kDa p 97.2 0.00015 5.2E-09 66.8 2.8 35 17-51 18-54 (359)
274 2pt5_A Shikimate kinase, SK; a 97.2 0.00023 7.9E-09 57.6 3.6 30 23-52 2-31 (168)
275 3e70_C DPA, signal recognition 97.2 0.00018 6.3E-09 65.7 3.2 39 19-57 127-167 (328)
276 3tlx_A Adenylate kinase 2; str 97.2 0.00022 7.6E-09 62.0 3.6 34 19-52 27-60 (243)
277 1m7g_A Adenylylsulfate kinase; 97.2 0.00029 1E-08 59.6 4.3 41 17-57 21-65 (211)
278 3fb4_A Adenylate kinase; psych 97.2 0.00023 7.7E-09 60.3 3.5 30 23-52 2-31 (216)
279 3dl0_A Adenylate kinase; phosp 97.1 0.00021 7.2E-09 60.5 3.3 30 23-52 2-31 (216)
280 3pxi_A Negative regulator of g 97.1 0.00029 9.9E-09 71.3 4.8 40 23-62 523-565 (758)
281 2oap_1 GSPE-2, type II secreti 97.1 0.00011 3.7E-09 71.2 1.5 40 14-53 253-294 (511)
282 1r6b_X CLPA protein; AAA+, N-t 97.1 0.00025 8.6E-09 71.6 4.1 38 22-59 489-526 (758)
283 2wwf_A Thymidilate kinase, put 97.1 0.00023 7.9E-09 59.8 3.2 31 19-49 8-38 (212)
284 1tq4_A IIGP1, interferon-induc 97.1 0.0001 3.5E-09 69.4 1.1 24 23-46 71-94 (413)
285 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00039 1.3E-08 63.2 4.8 38 16-53 118-155 (331)
286 1iqp_A RFCS; clamp loader, ext 97.1 4.5E-05 1.5E-09 68.4 -1.4 47 201-262 17-63 (327)
287 2v54_A DTMP kinase, thymidylat 97.1 0.00034 1.2E-08 58.4 4.1 32 20-51 3-35 (204)
288 1nlf_A Regulatory protein REPA 97.1 0.00025 8.4E-09 62.8 3.3 31 17-47 26-56 (279)
289 3hws_A ATP-dependent CLP prote 97.1 0.00015 5.2E-09 66.7 2.0 62 191-262 4-68 (363)
290 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00041 1.4E-08 60.9 4.6 38 20-57 3-43 (260)
291 3be4_A Adenylate kinase; malar 97.1 0.00025 8.4E-09 60.4 3.0 32 21-52 5-36 (217)
292 1ak2_A Adenylate kinase isoenz 97.1 0.00031 1.1E-08 60.5 3.7 33 20-52 15-47 (233)
293 2yvu_A Probable adenylyl-sulfa 97.1 0.00041 1.4E-08 57.3 4.1 29 18-46 10-38 (186)
294 1uf9_A TT1252 protein; P-loop, 97.1 0.00035 1.2E-08 58.2 3.8 30 20-50 7-36 (203)
295 2f1r_A Molybdopterin-guanine d 97.0 0.00018 6.1E-09 59.5 1.8 36 22-57 3-43 (171)
296 1njg_A DNA polymerase III subu 97.0 0.00037 1.3E-08 58.7 3.8 26 22-47 46-71 (250)
297 1nn5_A Similar to deoxythymidy 97.0 0.0003 1E-08 59.1 3.1 29 19-47 7-35 (215)
298 3tqc_A Pantothenate kinase; bi 97.0 0.00039 1.3E-08 63.3 4.0 27 20-46 91-117 (321)
299 3r20_A Cytidylate kinase; stru 97.0 0.00041 1.4E-08 60.3 3.9 30 20-49 8-37 (233)
300 2plr_A DTMP kinase, probable t 97.0 0.00042 1.4E-08 58.0 3.8 27 21-47 4-30 (213)
301 3pih_A Uvrabc system protein A 97.0 0.001 3.4E-08 68.6 7.3 70 116-203 783-854 (916)
302 2jaq_A Deoxyguanosine kinase; 97.0 0.00042 1.4E-08 57.7 3.7 28 23-50 2-29 (205)
303 1p9r_A General secretion pathw 97.0 0.00041 1.4E-08 65.4 3.9 29 19-47 165-193 (418)
304 1vht_A Dephospho-COA kinase; s 97.0 0.0004 1.4E-08 58.9 3.5 30 20-50 3-32 (218)
305 1sxj_C Activator 1 40 kDa subu 97.0 0.00027 9.2E-09 64.4 2.6 23 24-46 49-71 (340)
306 1e4v_A Adenylate kinase; trans 97.0 0.00038 1.3E-08 59.0 3.2 30 23-52 2-31 (214)
307 1nks_A Adenylate kinase; therm 97.0 0.0004 1.4E-08 57.1 3.2 24 23-46 3-26 (194)
308 1u0j_A DNA replication protein 97.0 0.00058 2E-08 60.4 4.4 27 19-45 102-128 (267)
309 3sr0_A Adenylate kinase; phosp 97.0 0.00047 1.6E-08 58.7 3.6 28 23-50 2-29 (206)
310 2vp4_A Deoxynucleoside kinase; 97.0 0.00037 1.3E-08 60.0 3.0 28 17-44 16-43 (230)
311 1pui_A ENGB, probable GTP-bind 96.9 0.00023 7.8E-09 59.6 1.6 33 13-45 18-50 (210)
312 1q3t_A Cytidylate kinase; nucl 96.9 0.00047 1.6E-08 59.4 3.6 32 19-50 14-45 (236)
313 3cr8_A Sulfate adenylyltranfer 96.9 0.00039 1.3E-08 67.8 3.4 42 17-58 365-410 (552)
314 2pbr_A DTMP kinase, thymidylat 96.9 0.00055 1.9E-08 56.4 3.8 30 23-52 2-34 (195)
315 3crm_A TRNA delta(2)-isopenten 96.9 0.00053 1.8E-08 62.4 3.9 35 21-55 5-39 (323)
316 1qvr_A CLPB protein; coiled co 96.9 0.00046 1.6E-08 70.8 3.9 38 22-59 589-629 (854)
317 1hqc_A RUVB; extended AAA-ATPa 96.9 4.5E-05 1.5E-09 68.6 -3.3 51 202-262 5-55 (324)
318 3ake_A Cytidylate kinase; CMP 96.9 0.00054 1.8E-08 57.3 3.5 29 23-51 4-32 (208)
319 1jbk_A CLPB protein; beta barr 96.9 6.6E-05 2.2E-09 61.3 -2.2 41 208-262 20-60 (195)
320 1sxj_D Activator 1 41 kDa subu 96.9 0.00061 2.1E-08 61.7 3.8 35 22-56 59-99 (353)
321 3lda_A DNA repair protein RAD5 96.9 0.00071 2.4E-08 63.4 4.3 28 16-43 173-200 (400)
322 1sxj_C Activator 1 40 kDa subu 96.9 0.00015 5.1E-09 66.1 -0.4 47 201-262 17-63 (340)
323 2dr3_A UPF0273 protein PH0284; 96.8 0.00076 2.6E-08 57.8 4.2 39 15-53 17-58 (247)
324 4aby_A DNA repair protein RECN 96.8 0.00022 7.4E-09 66.7 0.7 32 14-46 54-85 (415)
325 1u0l_A Probable GTPase ENGC; p 96.8 0.00048 1.7E-08 61.9 3.0 31 19-49 167-197 (301)
326 2grj_A Dephospho-COA kinase; T 96.8 0.00059 2E-08 57.4 3.2 32 21-52 12-43 (192)
327 2rcn_A Probable GTPase ENGC; Y 96.8 0.00062 2.1E-08 62.9 3.6 32 20-51 214-246 (358)
328 2xb4_A Adenylate kinase; ATP-b 96.8 0.00061 2.1E-08 58.3 3.2 28 23-50 2-29 (223)
329 3pvs_A Replication-associated 96.8 8.9E-05 3.1E-09 70.6 -2.3 47 201-262 18-67 (447)
330 1t9h_A YLOQ, probable GTPase E 96.8 0.00021 7E-09 64.7 0.2 32 17-48 169-200 (307)
331 1vma_A Cell division protein F 96.8 0.00087 3E-08 60.5 4.3 31 16-46 99-129 (306)
332 2chq_A Replication factor C sm 96.8 0.00043 1.5E-08 61.6 2.2 34 23-56 40-78 (319)
333 4eaq_A DTMP kinase, thymidylat 96.8 0.00087 3E-08 57.8 4.0 30 18-47 23-52 (229)
334 2z0h_A DTMP kinase, thymidylat 96.8 0.00081 2.8E-08 55.6 3.7 29 23-51 2-33 (197)
335 1um8_A ATP-dependent CLP prote 96.8 7.5E-05 2.6E-09 69.1 -3.0 62 191-262 10-89 (376)
336 3hr8_A Protein RECA; alpha and 96.8 0.00077 2.6E-08 62.2 3.8 52 5-56 42-99 (356)
337 3te6_A Regulatory protein SIR3 96.8 0.00022 7.6E-09 64.8 0.2 20 243-262 43-62 (318)
338 1qhl_A Protein (cell division 96.8 7.3E-05 2.5E-09 64.8 -2.9 41 16-57 23-65 (227)
339 3k1j_A LON protease, ATP-depen 96.8 0.00041 1.4E-08 68.4 2.0 32 16-47 55-86 (604)
340 1nij_A Hypothetical protein YJ 96.8 0.00049 1.7E-08 62.4 2.3 37 21-57 4-50 (318)
341 1uj2_A Uridine-cytidine kinase 96.8 0.00092 3.1E-08 58.2 4.0 30 19-48 20-49 (252)
342 2yv5_A YJEQ protein; hydrolase 96.8 0.00084 2.9E-08 60.4 3.9 30 19-49 163-192 (302)
343 3nbx_X ATPase RAVA; AAA+ ATPas 96.8 0.00061 2.1E-08 65.7 3.1 27 20-46 40-66 (500)
344 3zvl_A Bifunctional polynucleo 96.8 0.00097 3.3E-08 62.7 4.5 33 19-51 256-288 (416)
345 1sxj_E Activator 1 40 kDa subu 96.8 0.00066 2.3E-08 61.7 3.2 23 23-45 38-60 (354)
346 3a8t_A Adenylate isopentenyltr 96.8 0.00079 2.7E-08 61.6 3.7 34 21-54 40-73 (339)
347 1v5w_A DMC1, meiotic recombina 96.7 0.0012 4E-08 60.5 4.8 39 6-44 105-145 (343)
348 3foz_A TRNA delta(2)-isopenten 96.7 0.00095 3.2E-08 60.4 4.0 36 20-55 9-44 (316)
349 2f6r_A COA synthase, bifunctio 96.7 0.001 3.5E-08 59.1 4.2 30 20-50 74-103 (281)
350 3u61_B DNA polymerase accessor 96.7 0.0002 6.8E-09 64.6 -0.5 49 200-262 17-65 (324)
351 1odf_A YGR205W, hypothetical 3 96.7 0.0009 3.1E-08 59.9 3.7 30 18-47 28-57 (290)
352 2z43_A DNA repair and recombin 96.7 0.00098 3.4E-08 60.5 3.9 40 6-45 90-131 (324)
353 1g8p_A Magnesium-chelatase 38 96.7 0.00045 1.5E-08 62.6 1.5 26 21-46 45-70 (350)
354 1sxj_E Activator 1 40 kDa subu 96.7 0.00018 6.1E-09 65.5 -1.2 47 201-262 6-53 (354)
355 3exa_A TRNA delta(2)-isopenten 96.7 0.0012 4.1E-08 59.8 4.2 35 21-55 3-37 (322)
356 1ex7_A Guanylate kinase; subst 96.6 0.0012 4.2E-08 55.2 3.6 24 23-46 3-26 (186)
357 1zu4_A FTSY; GTPase, signal re 96.6 0.0014 4.7E-08 59.6 4.1 33 14-46 98-130 (320)
358 1sxj_B Activator 1 37 kDa subu 96.6 0.00026 9E-09 63.2 -0.8 47 201-262 13-59 (323)
359 1sxj_B Activator 1 37 kDa subu 96.6 0.00084 2.9E-08 59.8 2.6 34 23-56 44-82 (323)
360 2fna_A Conserved hypothetical 96.6 0.0014 4.9E-08 58.9 4.1 35 22-56 31-65 (357)
361 3n70_A Transport activator; si 96.6 0.00032 1.1E-08 55.9 -0.3 18 245-262 24-41 (145)
362 3thx_B DNA mismatch repair pro 96.6 0.00098 3.4E-08 68.7 3.2 30 14-43 666-695 (918)
363 2h92_A Cytidylate kinase; ross 96.6 0.0011 3.9E-08 56.0 3.1 31 21-51 3-33 (219)
364 1ltq_A Polynucleotide kinase; 96.6 0.001 3.6E-08 59.1 2.9 24 22-45 3-26 (301)
365 3szr_A Interferon-induced GTP- 96.5 0.00086 2.9E-08 66.2 2.5 34 24-57 48-84 (608)
366 1tf7_A KAIC; homohexamer, hexa 96.5 0.0013 4.4E-08 63.7 3.7 32 15-46 275-306 (525)
367 3co5_A Putative two-component 96.5 0.00026 8.8E-09 56.3 -1.2 17 246-262 28-44 (143)
368 3qf7_A RAD50; ABC-ATPase, ATPa 96.5 0.0012 4E-08 61.1 3.0 57 133-204 276-332 (365)
369 1oix_A RAS-related protein RAB 96.5 0.0013 4.6E-08 54.4 3.1 24 22-45 30-53 (191)
370 1iqp_A RFCS; clamp loader, ext 96.5 0.0017 5.7E-08 58.0 3.9 34 23-56 48-86 (327)
371 3d3q_A TRNA delta(2)-isopenten 96.5 0.0015 5.1E-08 59.8 3.6 33 22-54 8-40 (340)
372 2p65_A Hypothetical protein PF 96.5 0.00015 5.2E-09 59.0 -2.8 18 245-262 43-60 (187)
373 1jr3_A DNA polymerase III subu 96.5 0.0018 6.1E-08 59.0 4.1 27 21-47 38-64 (373)
374 2bjv_A PSP operon transcriptio 96.5 0.00026 8.9E-09 62.0 -1.6 42 209-262 5-46 (265)
375 2px0_A Flagellar biosynthesis 96.5 0.0017 5.8E-08 58.3 3.8 28 19-46 103-130 (296)
376 2zr9_A Protein RECA, recombina 96.5 0.0015 5E-08 60.2 3.4 39 16-54 56-97 (349)
377 2f9l_A RAB11B, member RAS onco 96.5 0.0015 5.1E-08 54.3 3.1 24 22-45 6-29 (199)
378 2qmh_A HPR kinase/phosphorylas 96.4 0.0015 5.2E-08 55.3 3.1 34 20-54 33-66 (205)
379 1np6_A Molybdopterin-guanine d 96.4 0.0021 7.1E-08 53.2 3.9 27 20-46 5-31 (174)
380 2o5v_A DNA replication and rep 96.4 0.0014 4.7E-08 60.6 3.0 28 15-43 21-48 (359)
381 1wb9_A DNA mismatch repair pro 96.4 0.0016 5.6E-08 66.2 3.7 26 19-44 605-630 (800)
382 1f2t_A RAD50 ABC-ATPase; DNA d 96.4 0.0019 6.6E-08 51.8 3.4 25 21-45 23-47 (149)
383 1gtv_A TMK, thymidylate kinase 96.4 0.00085 2.9E-08 56.3 1.3 24 23-46 2-25 (214)
384 1w5s_A Origin recognition comp 96.4 0.0015 5.2E-08 60.3 3.1 36 20-55 49-95 (412)
385 3ec2_A DNA replication protein 96.4 0.00036 1.2E-08 57.3 -1.2 18 245-262 38-55 (180)
386 1w1w_A Structural maintenance 96.4 0.002 6.9E-08 60.6 3.8 32 16-47 21-52 (430)
387 2qen_A Walker-type ATPase; unk 96.4 0.0021 7.1E-08 57.7 3.7 34 21-56 31-64 (350)
388 1njg_A DNA polymerase III subu 96.3 0.0004 1.4E-08 58.5 -1.1 48 201-262 15-62 (250)
389 1d2n_A N-ethylmaleimide-sensit 96.3 0.00043 1.5E-08 60.9 -0.9 19 244-262 63-81 (272)
390 3eph_A TRNA isopentenyltransfe 96.3 0.0022 7.6E-08 60.0 3.8 33 21-53 2-34 (409)
391 1a7j_A Phosphoribulokinase; tr 96.3 0.0012 3.9E-08 59.2 1.7 27 20-46 4-30 (290)
392 1x6v_B Bifunctional 3'-phospho 96.3 0.0026 8.9E-08 62.9 4.3 38 20-57 51-91 (630)
393 3f9v_A Minichromosome maintena 96.3 0.00045 1.5E-08 68.1 -1.3 48 212-262 297-344 (595)
394 3bos_A Putative DNA replicatio 96.3 0.0011 3.7E-08 56.3 1.2 18 245-262 52-69 (242)
395 3thx_A DNA mismatch repair pro 96.3 0.0018 6.1E-08 66.9 3.1 30 14-43 655-684 (934)
396 1jr3_A DNA polymerase III subu 96.2 0.00044 1.5E-08 63.1 -1.4 48 201-262 8-55 (373)
397 1ewq_A DNA mismatch repair pro 96.2 0.0021 7.3E-08 65.0 3.1 30 15-45 571-600 (765)
398 1e69_A Chromosome segregation 96.1 0.002 6.9E-08 58.3 2.4 30 15-45 19-48 (322)
399 2w58_A DNAI, primosome compone 96.1 0.0006 2.1E-08 56.9 -1.1 17 246-262 55-71 (202)
400 2zts_A Putative uncharacterize 96.1 0.0042 1.4E-07 53.0 4.3 27 17-43 26-52 (251)
401 2gj8_A MNME, tRNA modification 96.1 0.003 1E-07 51.3 3.1 25 20-44 3-27 (172)
402 3fdi_A Uncharacterized protein 96.1 0.0042 1.4E-07 52.4 3.9 30 22-51 7-36 (201)
403 1u94_A RECA protein, recombina 96.1 0.0041 1.4E-07 57.3 4.0 49 6-54 45-99 (356)
404 3pxg_A Negative regulator of g 96.0 0.00071 2.4E-08 64.6 -1.2 40 209-262 179-218 (468)
405 2wji_A Ferrous iron transport 96.0 0.0032 1.1E-07 50.6 2.7 23 22-44 4-26 (165)
406 3gmt_A Adenylate kinase; ssgci 96.0 0.0045 1.6E-07 53.5 3.9 31 22-52 9-39 (230)
407 3cmu_A Protein RECA, recombina 96.0 0.0076 2.6E-07 66.5 6.4 41 6-46 1409-1452(2050)
408 1ls1_A Signal recognition part 96.0 0.0046 1.6E-07 55.4 4.0 27 20-46 97-123 (295)
409 1xjc_A MOBB protein homolog; s 96.0 0.0046 1.6E-07 50.9 3.7 26 21-46 4-29 (169)
410 2i1q_A DNA repair and recombin 96.0 0.0039 1.3E-07 56.2 3.6 38 7-44 82-121 (322)
411 1l8q_A Chromosomal replication 96.0 0.00092 3.2E-08 60.2 -0.6 19 244-262 36-54 (324)
412 1a5t_A Delta prime, HOLB; zinc 96.0 0.0046 1.6E-07 56.1 4.0 27 20-46 23-49 (334)
413 3qks_A DNA double-strand break 96.0 0.0042 1.4E-07 52.4 3.4 27 21-47 23-49 (203)
414 2gno_A DNA polymerase III, gam 95.9 0.0095 3.2E-07 53.6 5.9 51 21-76 18-74 (305)
415 2p67_A LAO/AO transport system 95.9 0.0047 1.6E-07 56.4 3.9 30 16-45 51-80 (341)
416 3io5_A Recombination and repai 95.9 0.0041 1.4E-07 56.4 3.3 39 16-55 24-67 (333)
417 2r44_A Uncharacterized protein 95.9 0.00066 2.3E-08 61.3 -2.0 17 246-262 47-63 (331)
418 2o8b_B DNA mismatch repair pro 95.9 0.0044 1.5E-07 64.7 3.8 23 21-44 789-811 (1022)
419 2qgz_A Helicase loader, putati 95.9 0.001 3.5E-08 60.0 -0.8 18 245-262 152-169 (308)
420 1udx_A The GTP-binding protein 95.9 0.0017 5.8E-08 61.2 0.6 32 13-44 149-180 (416)
421 2www_A Methylmalonic aciduria 95.9 0.0052 1.8E-07 56.4 3.9 26 20-45 73-98 (349)
422 2zej_A Dardarin, leucine-rich 95.9 0.0033 1.1E-07 51.5 2.3 22 23-44 4-25 (184)
423 3bh0_A DNAB-like replicative h 95.9 0.0059 2E-07 55.1 4.2 30 16-45 63-92 (315)
424 1ni3_A YCHF GTPase, YCHF GTP-b 95.8 0.0055 1.9E-07 57.2 4.0 27 17-43 16-42 (392)
425 1m8p_A Sulfate adenylyltransfe 95.8 0.0055 1.9E-07 60.0 4.0 39 19-57 394-436 (573)
426 2wjg_A FEOB, ferrous iron tran 95.8 0.0045 1.6E-07 50.4 2.9 23 22-44 8-30 (188)
427 3f9v_A Minichromosome maintena 95.8 0.0022 7.4E-08 63.2 1.1 27 23-49 329-355 (595)
428 3tqf_A HPR(Ser) kinase; transf 95.8 0.0057 1.9E-07 50.6 3.3 25 20-44 15-39 (181)
429 2r6a_A DNAB helicase, replicat 95.8 0.0063 2.1E-07 57.7 4.1 30 16-45 198-227 (454)
430 2qnr_A Septin-2, protein NEDD5 95.8 0.0034 1.2E-07 56.3 2.2 22 23-44 20-41 (301)
431 3ice_A Transcription terminati 95.7 0.007 2.4E-07 56.4 4.2 32 14-45 167-198 (422)
432 1p5z_B DCK, deoxycytidine kina 95.7 0.0034 1.2E-07 54.9 1.7 29 18-46 21-49 (263)
433 2ocp_A DGK, deoxyguanosine kin 95.6 0.0071 2.4E-07 52.0 3.6 26 21-46 2-27 (241)
434 4edh_A DTMP kinase, thymidylat 95.6 0.0079 2.7E-07 51.2 3.8 28 20-47 5-32 (213)
435 3nbx_X ATPase RAVA; AAA+ ATPas 95.6 0.0017 5.7E-08 62.7 -0.7 16 247-262 43-58 (500)
436 3lv8_A DTMP kinase, thymidylat 95.6 0.0075 2.6E-07 52.3 3.5 30 17-46 23-52 (236)
437 2qag_C Septin-7; cell cycle, c 95.6 0.0048 1.7E-07 58.1 2.5 23 23-45 33-55 (418)
438 2ged_A SR-beta, signal recogni 95.5 0.0095 3.2E-07 48.7 3.9 27 19-45 46-72 (193)
439 1j8m_F SRP54, signal recogniti 95.5 0.0069 2.4E-07 54.3 3.2 30 16-46 94-123 (297)
440 2dyk_A GTP-binding protein; GT 95.5 0.0078 2.7E-07 47.4 3.2 22 23-44 3-24 (161)
441 1xp8_A RECA protein, recombina 95.5 0.0085 2.9E-07 55.4 3.9 49 6-54 56-110 (366)
442 3qkt_A DNA double-strand break 95.5 0.0072 2.5E-07 55.0 3.4 24 22-45 24-47 (339)
443 1z2a_A RAS-related protein RAB 95.5 0.0078 2.7E-07 47.6 3.1 23 22-44 6-28 (168)
444 3v9p_A DTMP kinase, thymidylat 95.5 0.0074 2.5E-07 52.0 3.1 28 19-46 23-50 (227)
445 2vf7_A UVRA2, excinuclease ABC 95.5 0.0022 7.6E-08 65.5 -0.3 70 116-203 708-779 (842)
446 1in4_A RUVB, holliday junction 95.4 0.0018 6E-08 58.9 -1.0 17 246-262 52-68 (334)
447 1kao_A RAP2A; GTP-binding prot 95.4 0.0086 3E-07 47.2 3.2 23 22-44 4-26 (167)
448 4fcw_A Chaperone protein CLPB; 95.4 0.0023 8E-08 56.8 -0.2 18 245-262 47-64 (311)
449 2lkc_A Translation initiation 95.4 0.011 3.8E-07 47.4 3.9 26 19-44 6-31 (178)
450 2ce2_X GTPase HRAS; signaling 95.4 0.0082 2.8E-07 47.1 3.0 22 23-44 5-26 (166)
451 3hdt_A Putative kinase; struct 95.4 0.011 3.6E-07 50.8 3.8 31 21-51 14-44 (223)
452 2ygr_A Uvrabc system protein A 95.4 0.0037 1.3E-07 64.6 1.0 69 117-203 842-912 (993)
453 1u8z_A RAS-related protein RAL 95.4 0.0091 3.1E-07 47.1 3.1 23 22-44 5-27 (168)
454 2nzj_A GTP-binding protein REM 95.4 0.008 2.7E-07 48.0 2.8 23 22-44 5-27 (175)
455 3kl4_A SRP54, signal recogniti 95.3 0.0088 3E-07 56.5 3.4 27 20-46 96-122 (433)
456 3tmk_A Thymidylate kinase; pho 95.3 0.012 4E-07 50.3 3.9 28 20-47 4-31 (216)
457 1z0j_A RAB-22, RAS-related pro 95.3 0.0098 3.4E-07 47.1 3.2 24 22-45 7-30 (170)
458 2v1u_A Cell division control p 95.3 0.0027 9.3E-08 57.8 -0.2 43 210-262 19-61 (387)
459 4i1u_A Dephospho-COA kinase; s 95.3 0.017 5.9E-07 49.1 4.9 30 22-52 10-39 (210)
460 1ega_A Protein (GTP-binding pr 95.3 0.0074 2.5E-07 54.1 2.7 24 21-44 8-31 (301)
461 1ek0_A Protein (GTP-binding pr 95.3 0.0097 3.3E-07 47.1 3.1 22 23-44 5-26 (170)
462 1z08_A RAS-related protein RAB 95.3 0.0099 3.4E-07 47.2 3.2 23 22-44 7-29 (170)
463 2axn_A 6-phosphofructo-2-kinas 95.3 0.012 4E-07 57.0 4.2 27 20-46 34-60 (520)
464 2orw_A Thymidine kinase; TMTK, 95.3 0.012 4E-07 48.9 3.7 24 21-44 3-26 (184)
465 1wms_A RAB-9, RAB9, RAS-relate 95.3 0.01 3.4E-07 47.6 3.2 23 22-44 8-30 (177)
466 1upt_A ARL1, ADP-ribosylation 95.3 0.013 4.4E-07 46.6 3.8 25 20-44 6-30 (171)
467 2erx_A GTP-binding protein DI- 95.3 0.0093 3.2E-07 47.3 3.0 23 22-44 4-26 (172)
468 1nrj_B SR-beta, signal recogni 95.3 0.013 4.3E-07 49.1 3.9 26 20-45 11-36 (218)
469 2p5s_A RAS and EF-hand domain 95.3 0.011 3.9E-07 48.7 3.5 31 14-44 21-51 (199)
470 1g8f_A Sulfate adenylyltransfe 95.3 0.0094 3.2E-07 57.5 3.3 29 19-47 393-421 (511)
471 2z4s_A Chromosomal replication 95.2 0.0023 7.8E-08 60.6 -1.0 18 245-262 130-147 (440)
472 1ky3_A GTP-binding protein YPT 95.2 0.011 3.7E-07 47.5 3.2 24 21-44 8-31 (182)
473 1g16_A RAS-related protein SEC 95.2 0.01 3.5E-07 47.1 3.0 23 22-44 4-26 (170)
474 1c9k_A COBU, adenosylcobinamid 95.2 0.01 3.4E-07 49.4 3.0 29 24-53 2-30 (180)
475 1c1y_A RAS-related protein RAP 95.2 0.011 3.7E-07 46.7 3.1 23 22-44 4-26 (167)
476 3ld9_A DTMP kinase, thymidylat 95.2 0.013 4.4E-07 50.4 3.7 29 19-47 19-47 (223)
477 3k53_A Ferrous iron transport 95.2 0.011 3.7E-07 51.9 3.3 23 22-44 4-26 (271)
478 3q85_A GTP-binding protein REM 95.2 0.0097 3.3E-07 47.3 2.7 21 23-43 4-24 (169)
479 2q6t_A DNAB replication FORK h 95.2 0.013 4.5E-07 55.4 4.0 30 16-45 195-224 (444)
480 1r2q_A RAS-related protein RAB 95.2 0.011 3.9E-07 46.7 3.1 23 22-44 7-29 (170)
481 1v5w_A DMC1, meiotic recombina 95.2 0.00081 2.8E-08 61.6 -4.2 33 231-263 105-140 (343)
482 1svi_A GTP-binding protein YSX 95.2 0.016 5.3E-07 47.4 4.0 26 19-44 21-46 (195)
483 2r6f_A Excinuclease ABC subuni 95.1 0.0036 1.2E-07 64.6 0.0 69 117-203 824-894 (972)
484 3bc1_A RAS-related protein RAB 95.1 0.012 4E-07 47.8 3.1 23 22-44 12-34 (195)
485 3lxx_A GTPase IMAP family memb 95.1 0.011 3.6E-07 50.7 3.0 25 21-45 29-53 (239)
486 2fn4_A P23, RAS-related protei 95.1 0.012 4E-07 47.2 3.1 23 22-44 10-32 (181)
487 1ojl_A Transcriptional regulat 95.1 0.0033 1.1E-07 56.5 -0.3 19 244-262 24-42 (304)
488 2hxs_A RAB-26, RAS-related pro 95.1 0.012 4.2E-07 47.1 3.1 23 22-44 7-29 (178)
489 4a1f_A DNAB helicase, replicat 95.1 0.015 5.1E-07 53.2 4.0 29 17-45 42-70 (338)
490 3clv_A RAB5 protein, putative; 95.1 0.012 4.2E-07 47.9 3.2 24 21-44 7-30 (208)
491 4tmk_A Protein (thymidylate ki 95.1 0.015 5.1E-07 49.5 3.7 26 21-46 3-28 (213)
492 2ffh_A Protein (FFH); SRP54, s 95.1 0.014 4.9E-07 54.9 3.9 27 20-46 97-123 (425)
493 2kjq_A DNAA-related protein; s 95.1 0.0039 1.3E-07 49.9 0.0 19 244-262 35-53 (149)
494 1r8s_A ADP-ribosylation factor 95.0 0.013 4.5E-07 46.2 3.1 22 23-44 2-23 (164)
495 4dsu_A GTPase KRAS, isoform 2B 95.0 0.013 4.5E-07 47.3 3.2 23 22-44 5-27 (189)
496 2oil_A CATX-8, RAS-related pro 95.0 0.013 4.4E-07 47.9 3.1 23 22-44 26-48 (193)
497 2y8e_A RAB-protein 6, GH09086P 95.0 0.013 4.3E-07 46.9 3.0 23 22-44 15-37 (179)
498 1z0f_A RAB14, member RAS oncog 95.0 0.013 4.5E-07 46.8 3.1 25 21-45 15-39 (179)
499 2a9k_A RAS-related protein RAL 95.0 0.013 4.5E-07 47.2 3.1 23 22-44 19-41 (187)
500 1bif_A 6-phosphofructo-2-kinas 95.0 0.011 3.9E-07 56.2 3.1 28 19-46 37-64 (469)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=7.1e-44 Score=360.54 Aligned_cols=246 Identities=30% Similarity=0.460 Sum_probs=200.8
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
.|.+|+++|++|..+++.++++||||||||||||+|+|+||++++.+++.++|.++.+++.|++++.++.+|..|...
T Consensus 219 ~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~P 298 (806)
T 3cf2_A 219 MVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP 298 (806)
T ss_dssp HHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred ---------HHhhhhcCCCchhhh----HHHhhc-----------------CccchhhcCC-----------CccHHHHH
Q psy13773 80 ---------NFRYAMGKSSPSALR----ETIVEV-----------------PNITWEDIGG-----------LEGVKREL 118 (299)
Q Consensus 80 ---------~~~~~~~~~~~~~~~----~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~ 118 (299)
.++..+........+ +++..+ ++.++++++| .|+..+|.
T Consensus 299 sIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~ 378 (806)
T 3cf2_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378 (806)
T ss_dssp EEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHH
T ss_pred eEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHH
Confidence 455555444332222 222222 6777777754 68998887
Q ss_pred h---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcc
Q psy13773 119 Q---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP 189 (299)
Q Consensus 119 ~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
+ .+..++++..||.+|+||||+||+.||.+|++.|++|...... ...... ..+.....
T Consensus 379 ~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~------~~~~~~-------~~e~~~~~ 445 (806)
T 3cf2_A 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID------LEDETI-------DAEVMNSL 445 (806)
T ss_dssp HHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGG------GTCCCC-------SHHHHHHC
T ss_pred HHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc------cccccc-------chhhhccc
Confidence 6 3457889999999999999999999999999999998764210 000000 00001124
Q ss_pred cccHHHHHHHHHhccCC-----------CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCC
Q psy13773 190 EITRAHFEEAMRFARRS-----------VNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTG 257 (299)
Q Consensus 190 ~it~~Df~~AL~~~~Ps-----------Vsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg 257 (299)
.|+.+||..|+++++|+ |+|+|||||+++|+++.++|+| |++||++|.. |.+...|+|||||||||
T Consensus 446 ~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~--p~~~p~~f~~~g~~~~~gvLl~GPPGtG 523 (806)
T 3cf2_A 446 AVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQY--PVEHPDKFLKFGMTPSKGVLFYGPPGCG 523 (806)
T ss_dssp EECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTT--TTTCSGGGSSSCCCCCSCCEEESSTTSS
T ss_pred eeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHh--hhhCHHHHHhcCCCCCceEEEecCCCCC
Confidence 68899999999998864 9999999999999999999999 9999999976 78889999999999999
Q ss_pred Ceeee
Q psy13773 258 GILLM 262 (299)
Q Consensus 258 ~~ll~ 262 (299)
||+|-
T Consensus 524 KT~lA 528 (806)
T 3cf2_A 524 KTLLA 528 (806)
T ss_dssp HHHHH
T ss_pred chHHH
Confidence 99874
No 2
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=3.1e-32 Score=275.63 Aligned_cols=224 Identities=69% Similarity=1.107 Sum_probs=123.6
Q ss_pred CeeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773 1 MISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME- 79 (299)
Q Consensus 1 ~~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~- 79 (299)
++|.+|+++|++|..+++.+++++|||||||||||+++++||.+++.+++.+++.++.++|+|+++++++.+|..|+..
T Consensus 491 e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~ 570 (806)
T 3cf2_A 491 ELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA 570 (806)
T ss_dssp TTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcC
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred ----------HHhhhhcCCC---c----hhhhHHHhhc-----------------CccchhhcCC-----------CccH
Q psy13773 80 ----------NFRYAMGKSS---P----SALRETIVEV-----------------PNITWEDIGG-----------LEGV 114 (299)
Q Consensus 80 ----------~~~~~~~~~~---~----~~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~ 114 (299)
.++..|.... . ....++|.++ |+.+|+++.| +|+.
T Consensus 571 P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~ 650 (806)
T 3cf2_A 571 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650 (806)
T ss_dssp SEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----
T ss_pred CceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCH
Confidence 4444443211 1 1122444443 7888888754 6888
Q ss_pred HHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCC
Q psy13773 115 KRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDED 185 (299)
Q Consensus 115 ~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (299)
++|.. .+..++|++.||++|+||||+||+.+|++|++.|+++.++...........+ +. .......
T Consensus 651 ~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~-~~----~~~~~~~ 725 (806)
T 3cf2_A 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTN-PS----AMEVEED 725 (806)
T ss_dssp CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC-cc----ccccccc
Confidence 88876 3456789999999999999999999999999999999875432111110000 00 0011122
Q ss_pred CCcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy13773 186 DPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFG 229 (299)
Q Consensus 186 ~~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~ 229 (299)
...++|+.+||++||++++|||+.+|+..|++|.++|..+.++|
T Consensus 726 ~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~~~~g 769 (806)
T 3cf2_A 726 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG 769 (806)
T ss_dssp --CCC----CCTTTC---------------CCCC----------
T ss_pred cccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCcc
Confidence 34468999999999999999999999999999999999999885
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.9e-30 Score=242.50 Aligned_cols=174 Identities=31% Similarity=0.517 Sum_probs=145.7
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
+|++|+++|++|..+++.+++++|||||||||||+++++||++++.+++.++++++.++|+|++++.++.+|..|+..
T Consensus 163 ~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP 242 (405)
T 4b4t_J 163 VIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAP 242 (405)
T ss_dssp HTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ---------HHhhhhcCCCchh-------hhHHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773 80 ---------NFRYAMGKSSPSA-------LRETIVEV-----------------PNITWEDIGG-----------LEGVK 115 (299)
Q Consensus 80 ---------~~~~~~~~~~~~~-------~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~ 115 (299)
.++..+....... ..+++.++ ++.+|+++.| .|+..
T Consensus 243 ~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~ 322 (405)
T 4b4t_J 243 SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVA 322 (405)
T ss_dssp EEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHH
T ss_pred ceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHH
Confidence 3444433322111 11333332 7888888854 68888
Q ss_pred HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773 116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD 186 (299)
Q Consensus 116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+|.+ .+..++|++.||.+|+||||+||+.+|.+|++.|+++..
T Consensus 323 ~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~---------------------------- 374 (405)
T 4b4t_J 323 ARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERR---------------------------- 374 (405)
T ss_dssp HHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC----------------------------
T ss_pred HHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC----------------------------
Confidence 8876 345788999999999999999999999999999987531
Q ss_pred CcccccHHHHHHHHHhccC
Q psy13773 187 PVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 187 ~~~~it~~Df~~AL~~~~P 205 (299)
..||.+||+.|++++.+
T Consensus 375 --~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 375 --IHVTQEDFELAVGKVMN 391 (405)
T ss_dssp --SBCCHHHHHHHHHHHHH
T ss_pred --CCcCHHHHHHHHHHHhC
Confidence 36999999999998765
No 4
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=9.6e-30 Score=259.90 Aligned_cols=245 Identities=30% Similarity=0.460 Sum_probs=183.7
Q ss_pred eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH---
Q psy13773 3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--- 79 (299)
Q Consensus 3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--- 79 (299)
|.+|+.+|++|.++++.++.+++|+||||||||||+++||++++..++.++|.++.+.+.++.+..++.+|+.+...
T Consensus 220 i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~ 299 (806)
T 1ypw_A 220 VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299 (806)
T ss_dssp HHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred --------HHhhhhcCCCchhhh----HHHhhc-----------------CccchhhcCC-----------CccHHHHHh
Q psy13773 80 --------NFRYAMGKSSPSALR----ETIVEV-----------------PNITWEDIGG-----------LEGVKRELQ 119 (299)
Q Consensus 80 --------~~~~~~~~~~~~~~~----~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~~ 119 (299)
.+...+......... .++..+ ++.+++++.+ .|+..+|.+
T Consensus 300 il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~ 379 (806)
T 1ypw_A 300 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379 (806)
T ss_dssp EEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHH
T ss_pred EEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHH
Confidence 111111111111111 111111 3344444422 567777765
Q ss_pred ---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCccc
Q psy13773 120 ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPE 190 (299)
Q Consensus 120 ---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (299)
.+..++++..++..++||+++|+..++.+|++.++++......... . .+ .........
T Consensus 380 il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~-~----------~~--~~~~~~~~~ 446 (806)
T 1ypw_A 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED-E----------TI--DAEVMNSLA 446 (806)
T ss_dssp HHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH-H----------HC--CHHHHTTCC
T ss_pred HHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhh-h----------cc--chhhhhhhh
Confidence 2345677899999999999999999999999988876431100000 0 00 000011235
Q ss_pred ccHHHHHHHHHhccC-----------CCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCC
Q psy13773 191 ITRAHFEEAMRFARR-----------SVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGG 258 (299)
Q Consensus 191 it~~Df~~AL~~~~P-----------sVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~ 258 (299)
++.+||..++...+| .++|+||+|++++|+.+.+.+.| |++||+.|.+ ++....++||||||||||
T Consensus 447 v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~--~~~~~~~~~~~~~~~~~~vLL~GppGtGK 524 (806)
T 1ypw_A 447 VTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQY--PVEHPDKFLKFGMTPSKGVLFYGPPGCGK 524 (806)
T ss_dssp CCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTS--SSSSCTTTTCCCCCCCCCCCCBCCTTSSH
T ss_pred hhhhhhhccccccCchhhhhhcccCccccccccccchhhhhhHHHHHHh--hhhchHHHHhcCCCCCceeEEECCCCCCH
Confidence 788999999998875 49999999999999999999999 9999999865 567778999999999999
Q ss_pred eeee
Q psy13773 259 ILLM 262 (299)
Q Consensus 259 ~ll~ 262 (299)
|+|.
T Consensus 525 T~La 528 (806)
T 1ypw_A 525 TLLA 528 (806)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9984
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.3e-29 Score=235.12 Aligned_cols=177 Identities=27% Similarity=0.450 Sum_probs=148.5
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
.|++|+++|++|..+++++++++|||||||||||+++++||++++.+++.+++.++.++|+|++++.++.+|..|+..
T Consensus 196 ~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP 275 (434)
T 4b4t_M 196 AIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAP 275 (434)
T ss_dssp HTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred ---------HHhhhhcCCCchh-------hhHHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773 80 ---------NFRYAMGKSSPSA-------LRETIVEV-----------------PNITWEDIGG-----------LEGVK 115 (299)
Q Consensus 80 ---------~~~~~~~~~~~~~-------~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~ 115 (299)
.++..+....... ...++..+ ++.+|+++.| .|+..
T Consensus 276 ~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~ 355 (434)
T 4b4t_M 276 TIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSED 355 (434)
T ss_dssp EEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHH
T ss_pred eEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHH
Confidence 4544443322211 11233322 7888888854 68888
Q ss_pred HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773 116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD 186 (299)
Q Consensus 116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+|.. .+..+++++.||.+|+||||+||+.+|.+|++.|+++..
T Consensus 356 ~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~---------------------------- 407 (434)
T 4b4t_M 356 SRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ---------------------------- 407 (434)
T ss_dssp HHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC----------------------------
T ss_pred HHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC----------------------------
Confidence 8876 345788999999999999999999999999999988642
Q ss_pred CcccccHHHHHHHHHhccCCCC
Q psy13773 187 PVPEITRAHFEEAMRFARRSVN 208 (299)
Q Consensus 187 ~~~~it~~Df~~AL~~~~PsVs 208 (299)
..|+.+||.+|+++++|+.+
T Consensus 408 --~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 408 --SSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp --SSBCHHHHHHHHHSCSSSCC
T ss_pred --CCcCHHHHHHHHHHHhCCCC
Confidence 36899999999999999754
No 6
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-29 Score=238.96 Aligned_cols=181 Identities=27% Similarity=0.487 Sum_probs=149.6
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
.|.+|+++|++|..+++.+++++|||||||||||+|+++||++++.+++.+++.++.++|+|++++.++.+|..|+..
T Consensus 197 ~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP 276 (437)
T 4b4t_I 197 SVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAP 276 (437)
T ss_dssp HHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ---------HHhhhhcCCCch---h----hhHHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773 80 ---------NFRYAMGKSSPS---A----LRETIVEV-----------------PNITWEDIGG-----------LEGVK 115 (299)
Q Consensus 80 ---------~~~~~~~~~~~~---~----~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~ 115 (299)
.++..+...... . ..++|.++ ++.+|+++.| .|+..
T Consensus 277 ~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~ 356 (437)
T 4b4t_I 277 SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS 356 (437)
T ss_dssp EEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHH
T ss_pred cEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHH
Confidence 333333222111 1 11333322 7888988865 68888
Q ss_pred HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773 116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD 186 (299)
Q Consensus 116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+|.+ .+..++|++.||..|+||||+||+.+|.+|++.|+++..
T Consensus 357 ~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~---------------------------- 408 (437)
T 4b4t_I 357 TKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR---------------------------- 408 (437)
T ss_dssp HHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC----------------------------
T ss_pred HHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC----------------------------
Confidence 8876 345688999999999999999999999999999987532
Q ss_pred CcccccHHHHHHHHHhccCCCCHHHH
Q psy13773 187 PVPEITRAHFEEAMRFARRSVNDADI 212 (299)
Q Consensus 187 ~~~~it~~Df~~AL~~~~PsVsw~DI 212 (299)
..||.+||++|++++.|+++.+++
T Consensus 409 --~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 409 --MQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp --SCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred --CccCHHHHHHHHHHHhCCCChhhH
Confidence 368999999999998876554444
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.9e-28 Score=231.94 Aligned_cols=179 Identities=29% Similarity=0.462 Sum_probs=147.4
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
+|.+|+++|++|..+++.+++++|||||||||||+++++||++++.+++.++++++.++|+|++++.++.+|..|+..
T Consensus 196 ~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P 275 (437)
T 4b4t_L 196 VIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEP 275 (437)
T ss_dssp HHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ---------HHhhhhcCCCch---h----hhHHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773 80 ---------NFRYAMGKSSPS---A----LRETIVEV-----------------PNITWEDIGG-----------LEGVK 115 (299)
Q Consensus 80 ---------~~~~~~~~~~~~---~----~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~ 115 (299)
.++..+...... . ...+|.++ ++.+|+++.| .|+..
T Consensus 276 ~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~ 355 (437)
T 4b4t_L 276 CIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEA 355 (437)
T ss_dssp EEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHH
T ss_pred ceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHH
Confidence 344333222211 1 11333332 7888888854 68888
Q ss_pred HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773 116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD 186 (299)
Q Consensus 116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+|.. .+..++|++.+|..|+||||+||+.+|.+|++.|+++..
T Consensus 356 ~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~---------------------------- 407 (437)
T 4b4t_L 356 GRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR---------------------------- 407 (437)
T ss_dssp HHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC----------------------------
T ss_pred HHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC----------------------------
Confidence 8876 345688999999999999999999999999999987532
Q ss_pred CcccccHHHHHHHHHhccCCCCHH
Q psy13773 187 PVPEITRAHFEEAMRFARRSVNDA 210 (299)
Q Consensus 187 ~~~~it~~Df~~AL~~~~PsVsw~ 210 (299)
..|+.+||.+|+++++|+.+-+
T Consensus 408 --~~i~~~d~~~Al~~v~~~~k~e 429 (437)
T 4b4t_L 408 --DHINPDDLMKAVRKVAEVKKLE 429 (437)
T ss_dssp --SSBCHHHHHHHHHHHHHTCC--
T ss_pred --CCCCHHHHHHHHHHHHhccCcc
Confidence 3689999999999998865543
No 8
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.6e-28 Score=230.43 Aligned_cols=174 Identities=29% Similarity=0.506 Sum_probs=145.0
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
.|++|+.+|++|..+++.+++++|||||||||||+|+++||++++.+++.+++.++.++|+|++++.++.+|..|+..
T Consensus 224 ~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP 303 (467)
T 4b4t_H 224 VVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKA 303 (467)
T ss_dssp HTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ---------HHhhhhcCCCchh-------hhHHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773 80 ---------NFRYAMGKSSPSA-------LRETIVEV-----------------PNITWEDIGG-----------LEGVK 115 (299)
Q Consensus 80 ---------~~~~~~~~~~~~~-------~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~ 115 (299)
.++..+....... ...+|.++ ++.+|+++.| .|+..
T Consensus 304 ~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~ 383 (467)
T 4b4t_H 304 CIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLE 383 (467)
T ss_dssp EEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHH
T ss_pred ceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHH
Confidence 3444443322211 11233322 7888888744 68888
Q ss_pred HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773 116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD 186 (299)
Q Consensus 116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+|.+ .+..+++++.||.+|+||||+||+.||.+|++.|+++..
T Consensus 384 ~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~---------------------------- 435 (467)
T 4b4t_H 384 GRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR---------------------------- 435 (467)
T ss_dssp HHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTC----------------------------
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC----------------------------
Confidence 8876 345678999999999999999999999999999988642
Q ss_pred CcccccHHHHHHHHHhccC
Q psy13773 187 PVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 187 ~~~~it~~Df~~AL~~~~P 205 (299)
..|+.+||++|++++.+
T Consensus 436 --~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 436 --KVATEKDFLKAVDKVIS 452 (467)
T ss_dssp --SSBCHHHHHHHHHHHHH
T ss_pred --CccCHHHHHHHHHHHhc
Confidence 35899999999998754
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.5e-27 Score=225.02 Aligned_cols=178 Identities=28% Similarity=0.438 Sum_probs=145.4
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
.|.+|+++|+.|..+++.+++++|||||||||||+++++||++++.+++.+++.++.++|+|++++.++.+|..|+..
T Consensus 187 ~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP 266 (428)
T 4b4t_K 187 AVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAP 266 (428)
T ss_dssp HHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ---------HHhhhhcCCCc---hh----hhHHHhhc-----------------CccchhhcCC------------CccH
Q psy13773 80 ---------NFRYAMGKSSP---SA----LRETIVEV-----------------PNITWEDIGG------------LEGV 114 (299)
Q Consensus 80 ---------~~~~~~~~~~~---~~----~~~~l~~l-----------------~~~l~~~~~r------------~p~~ 114 (299)
.++..+..... .. ..+++.++ ++.+|+++.| +|+.
T Consensus 267 ~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~ 346 (428)
T 4b4t_K 267 SIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDR 346 (428)
T ss_dssp EEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCH
T ss_pred CeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCH
Confidence 44444432211 11 11333332 7778887743 4788
Q ss_pred HHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCC
Q psy13773 115 KRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDED 185 (299)
Q Consensus 115 ~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (299)
.+|.. .+..++|++.||.+|+||||+||+.+|++|++.|+++..
T Consensus 347 ~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~--------------------------- 399 (428)
T 4b4t_K 347 RERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR--------------------------- 399 (428)
T ss_dssp HHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred HHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC---------------------------
Confidence 88765 345688999999999999999999999999999988642
Q ss_pred CCcccccHHHHHHHHHhc-cCCCCH
Q psy13773 186 DPVPEITRAHFEEAMRFA-RRSVND 209 (299)
Q Consensus 186 ~~~~~it~~Df~~AL~~~-~PsVsw 209 (299)
..|+.+||++|+.+. +++.+.
T Consensus 400 ---~~i~~~d~~~A~~~~~~~~~~~ 421 (428)
T 4b4t_K 400 ---YVILQSDLEEAYATQVKTDNTV 421 (428)
T ss_dssp ---SSBCHHHHHHHHHHHSCSCCCS
T ss_pred ---CCCCHHHHHHHHHHhhCccCCc
Confidence 368999999999774 665543
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.92 E-value=8.5e-25 Score=201.28 Aligned_cols=221 Identities=25% Similarity=0.457 Sum_probs=152.6
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh-cCCeecccchhhhhccccccHHHHHHHHHHHHHH-
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMWFGESEANVRDIFDKVTME- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l-~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~- 79 (299)
.|.+|+.+|++|... ..++.+++|+||||||||++++++|.++ +..++.+++.++.+.+.++.+..++.+|..+...
T Consensus 27 ~v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~ 105 (322)
T 1xwi_A 27 AVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105 (322)
T ss_dssp HHHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcC
Confidence 467899999999753 5678999999999999999999999998 7889999999999999999999999999987653
Q ss_pred ----------HHhhhhcCCCchhhh----HHHhhc------------------CccchhhcC-C--------CccHHHHH
Q psy13773 80 ----------NFRYAMGKSSPSALR----ETIVEV------------------PNITWEDIG-G--------LEGVKREL 118 (299)
Q Consensus 80 ----------~~~~~~~~~~~~~~~----~~l~~l------------------~~~l~~~~~-r--------~p~~~~R~ 118 (299)
.+...+......... +++..+ ++.+++++. | .|+..+|.
T Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~ 185 (322)
T 1xwi_A 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARA 185 (322)
T ss_dssp SEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHH
T ss_pred CcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHH
Confidence 222222222111111 122111 444555442 1 67777776
Q ss_pred hhh----------cccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-----------hc----C
Q psy13773 119 QEL----------VQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE--REK-----------LA----G 171 (299)
Q Consensus 119 ~~l----------~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~--~~~-----------~~----~ 171 (299)
..+ +.+.++..|+.+|+||||+|+..+|++|++.|+++......... ... .. +
T Consensus 186 ~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (322)
T 1xwi_A 186 AMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPG 265 (322)
T ss_dssp HHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSS
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccc
Confidence 511 24556789999999999999999999999999998753100000 000 00 0
Q ss_pred Ccccc-cccccC-CCCCCcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q psy13773 172 NPAAS-AAMETE-DEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQ 223 (299)
Q Consensus 172 ~~~~~-~~~~~~-~~~~~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~ 223 (299)
..+.. ..+... .......+|+.+||.+||++++|||+|+|+..|++|.++|.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~ 319 (322)
T 1xwi_A 266 DPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFG 319 (322)
T ss_dssp STTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTC
T ss_pred ccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHc
Confidence 00000 000000 01112357999999999999999999999999999998774
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.91 E-value=5.2e-24 Score=194.09 Aligned_cols=216 Identities=70% Similarity=1.121 Sum_probs=155.7
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
.|.+|+.+|+.|.++++.++.+++|+||||||||+++++||.+++.+++.++|.++.+.+.++.+..++.+|..+...
T Consensus 30 ~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p 109 (301)
T 3cf0_A 30 LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAP 109 (301)
T ss_dssp HHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred HHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCC
Confidence 356789999999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred ---------HHhhhhcCCC-------chhhhHHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773 80 ---------NFRYAMGKSS-------PSALRETIVEV-----------------PNITWEDIGG-----------LEGVK 115 (299)
Q Consensus 80 ---------~~~~~~~~~~-------~~~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~ 115 (299)
.+...+.... ......++..+ ++.+++++.+ .|+.+
T Consensus 110 ~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~ 189 (301)
T 3cf0_A 110 CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 189 (301)
T ss_dssp EEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHH
T ss_pred eEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHH
Confidence 2333322110 01111222211 3445555422 57777
Q ss_pred HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773 116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD 186 (299)
Q Consensus 116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+|.+ .+..++++..++.+++||||+||+.+|.+|++.|+++.+.......... ...+. .. ..+...
T Consensus 190 ~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~-~~~~~---~~-~~~~~~ 264 (301)
T 3cf0_A 190 SRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERER-QTNPS---AM-EVEEDD 264 (301)
T ss_dssp HHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-ccccc---cc-cccccc
Confidence 7765 1235788999999999999999999999999999988764321100000 00000 00 001112
Q ss_pred CcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Q psy13773 187 PVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTL 222 (299)
Q Consensus 187 ~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i 222 (299)
....|+.+||.+||++++|+|+++|+..|++|+++|
T Consensus 265 ~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 265 PVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp -CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 335799999999999999999999999999999987
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.91 E-value=1.8e-24 Score=194.81 Aligned_cols=192 Identities=37% Similarity=0.575 Sum_probs=138.1
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
.|++|+.+|+.|..+++..+.+++|+||||||||||+++||++++.+++.+++.++.+.+.++.++.++.+|+.+...
T Consensus 25 ~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 25 AILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp HHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence 367899999999999999999999999999999999999999999999999999999888888889999999987543
Q ss_pred ---------HHhhhhcCCC----chhhhHHHhhc-----------------CccchhhcCC-----------CccHHHHH
Q psy13773 80 ---------NFRYAMGKSS----PSALRETIVEV-----------------PNITWEDIGG-----------LEGVKREL 118 (299)
Q Consensus 80 ---------~~~~~~~~~~----~~~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~ 118 (299)
.+...+.... .....+.+.++ |+.+|+++.| .|+..+|.
T Consensus 105 ~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~ 184 (274)
T 2x8a_A 105 CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL 184 (274)
T ss_dssp EEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHH
T ss_pred CeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHH
Confidence 1111111000 01111222222 6677777643 68888877
Q ss_pred hh------------hcccCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCC
Q psy13773 119 QE------------LVQDVDLNYIAKVT--NGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDE 184 (299)
Q Consensus 119 ~~------------l~~~v~l~~LA~~t--~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (299)
+. +..++++..+|..+ +||||+||..+|++|++.|+++....... ..
T Consensus 185 ~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~-------------------~~ 245 (274)
T 2x8a_A 185 AILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS-------------------GN 245 (274)
T ss_dssp HHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc-------------------cc
Confidence 51 23578899999875 59999999999999999999876432110 00
Q ss_pred CCCcccccHHHHHHHHHhccCCCCHHHH
Q psy13773 185 DDPVPEITRAHFEEAMRFARRSVNDADI 212 (299)
Q Consensus 185 ~~~~~~it~~Df~~AL~~~~PsVsw~DI 212 (299)
......|+.+||++|+++++|+++.+|+
T Consensus 246 ~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 246 EKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp ----CCBCHHHHHHHHTTCCCCC-----
T ss_pred cccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 0112479999999999999999988764
No 13
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.90 E-value=1.6e-23 Score=195.24 Aligned_cols=221 Identities=30% Similarity=0.505 Sum_probs=147.6
Q ss_pred eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH---
Q psy13773 3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--- 79 (299)
Q Consensus 3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--- 79 (299)
|.+|+.+|++|.. ...++.++||+||+|||||++++++|.+++..++.+++.++.+.+.++.+..++.+|..+...
T Consensus 67 v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~ 145 (355)
T 2qp9_X 67 VILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 145 (355)
T ss_dssp THHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSE
T ss_pred HHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCe
Confidence 5678899999986 557788999999999999999999999999999999999999999999999999999887643
Q ss_pred --------HHhhhhcCCCchhhh----HHHhhc------------------CccchhhcC---------CCccHHHHHhh
Q psy13773 80 --------NFRYAMGKSSPSALR----ETIVEV------------------PNITWEDIG---------GLEGVKRELQE 120 (299)
Q Consensus 80 --------~~~~~~~~~~~~~~~----~~l~~l------------------~~~l~~~~~---------r~p~~~~R~~~ 120 (299)
.+...+......... .++..+ ++.+++++. ..|+..+|...
T Consensus 146 vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~i 225 (355)
T 2qp9_X 146 IIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTM 225 (355)
T ss_dssp EEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHH
T ss_pred EEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHH
Confidence 122111111111111 111111 333444331 26777777652
Q ss_pred h----------cccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHh--c--CCcccc--c
Q psy13773 121 L----------VQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEI-------RREREKL--A--GNPAAS--A 177 (299)
Q Consensus 121 l----------~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~-------~~~~~~~--~--~~~~~~--~ 177 (299)
+ +.+.++..|+.+++||||+||..+|.+|++.|+++...... ....... . +..... .
T Consensus 226 l~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
T 2qp9_X 226 FEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMS 305 (355)
T ss_dssp HHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECC
T ss_pred HHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcc
Confidence 1 34556789999999999999999999999999988653100 0000000 0 000000 0
Q ss_pred ccccCCCCCCcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q psy13773 178 AMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQ 224 (299)
Q Consensus 178 ~~~~~~~~~~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ 224 (299)
+...........+|+.+||..||++++|+|+++|+..|++|+++|..
T Consensus 306 ~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~ 352 (355)
T 2qp9_X 306 WTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 352 (355)
T ss_dssp GGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC-
T ss_pred cccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 00000111234579999999999999999999999999999998854
No 14
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.89 E-value=4.9e-23 Score=189.28 Aligned_cols=222 Identities=29% Similarity=0.495 Sum_probs=151.7
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
.|.+|+.+|++|.. ...++.+++|+||||||||++++++|.+++..++.++|.++.+.+.++.+..++.+|..+...
T Consensus 33 ~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~ 111 (322)
T 3eie_A 33 AVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKP 111 (322)
T ss_dssp HTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCC
Confidence 35678899999877 456788999999999999999999999999999999999999999999999999999988763
Q ss_pred ---------HHhhhhcCCCchh----hhHHHhhc------------------CccchhhcC---------CCccHHHHHh
Q psy13773 80 ---------NFRYAMGKSSPSA----LRETIVEV------------------PNITWEDIG---------GLEGVKRELQ 119 (299)
Q Consensus 80 ---------~~~~~~~~~~~~~----~~~~l~~l------------------~~~l~~~~~---------r~p~~~~R~~ 119 (299)
.+...+....... ...++..+ ++.+++++. ..|+..+|..
T Consensus 112 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~ 191 (322)
T 3eie_A 112 SIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 191 (322)
T ss_dssp EEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHH
T ss_pred eEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHH
Confidence 1211111110000 11111111 334444431 2677777765
Q ss_pred h----------hcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhc----CCccc-cc
Q psy13773 120 E----------LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEI-------RREREKLA----GNPAA-SA 177 (299)
Q Consensus 120 ~----------l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~-------~~~~~~~~----~~~~~-~~ 177 (299)
. .+.+.++..|+.+++||||+|+..+|++|++.|+++..+... ........ +.+.. ..
T Consensus 192 il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (322)
T 3eie_A 192 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEM 271 (322)
T ss_dssp HHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEE
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccc
Confidence 1 124556789999999999999999999999999998763200 00000000 00000 00
Q ss_pred ccc-cCCCCCCcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q psy13773 178 AME-TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQ 224 (299)
Q Consensus 178 ~~~-~~~~~~~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ 224 (299)
.+. .........+||.+||.+|++.++|+|+.+++..|++|.++|..
T Consensus 272 ~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 319 (322)
T 3eie_A 272 SWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 319 (322)
T ss_dssp EGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC-
T ss_pred cccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC
Confidence 000 01111233679999999999999999999999999999998864
No 15
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.89 E-value=1e-24 Score=222.73 Aligned_cols=223 Identities=70% Similarity=1.112 Sum_probs=134.2
Q ss_pred eeeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
.+.+|+.+|+.|.++++.++.+++|+||||||||||+++||+.++.+++.+++.++.+.|+++.+..++.+|+.++..
T Consensus 492 ~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p 571 (806)
T 1ypw_A 492 LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAP 571 (806)
T ss_dssp TTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCS
T ss_pred HHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCC
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred ---------HHhhhhcCCCc---hhhh----HHHhhc-----------------CccchhhcCC-----------CccHH
Q psy13773 80 ---------NFRYAMGKSSP---SALR----ETIVEV-----------------PNITWEDIGG-----------LEGVK 115 (299)
Q Consensus 80 ---------~~~~~~~~~~~---~~~~----~~l~~l-----------------~~~l~~~~~r-----------~p~~~ 115 (299)
.+...+..... .... .++..+ ++.+++++.| .|+..
T Consensus 572 ~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~ 651 (806)
T 1ypw_A 572 CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 651 (806)
T ss_dssp BCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCS
T ss_pred eEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHH
Confidence 22222211110 0111 222222 4556666643 46666
Q ss_pred HHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q psy13773 116 RELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDD 186 (299)
Q Consensus 116 ~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+|.. .+..++++..++..+.||||+|+..+|+.|++.|+++.+............+ +. ........
T Consensus 652 ~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~ 726 (806)
T 1ypw_A 652 SRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTN-PS----AMEVEEDD 726 (806)
T ss_dssp HHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC-----------------------------
T ss_pred HHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc-cc----cccccccc
Confidence 6655 2345678888999999999999999999999999988654321111000000 00 00111122
Q ss_pred CcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy13773 187 PVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFG 229 (299)
Q Consensus 187 ~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~ 229 (299)
....|+.+||.+|++.++|+|+.++|..|+.|.++|..+..||
T Consensus 727 ~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~~~~~~g 769 (806)
T 1ypw_A 727 PVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG 769 (806)
T ss_dssp CCTTTTTTSSCCCCCC---------------------------
T ss_pred ccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhccCC
Confidence 3457999999999999999999999999999999999988774
No 16
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.89 E-value=2.8e-23 Score=199.05 Aligned_cols=220 Identities=26% Similarity=0.473 Sum_probs=141.7
Q ss_pred eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh-cCCeecccchhhhhccccccHHHHHHHHHHHHHH--
Q psy13773 3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMWFGESEANVRDIFDKVTME-- 79 (299)
Q Consensus 3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l-~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-- 79 (299)
|++|+.+|++|.. ...++.++||+||||||||+++++||.++ +..++.+++.++.+.+.++.+..++.+|..+...
T Consensus 150 v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~ 228 (444)
T 2zan_A 150 VILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKP 228 (444)
T ss_dssp HTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCS
T ss_pred HHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCC
Confidence 5688999999875 34677899999999999999999999998 7889999999999999999888999999887653
Q ss_pred ---------HHhhhhcCCCchhhh----HHHhhc------------------CccchhhcCC---------CccHHHHHh
Q psy13773 80 ---------NFRYAMGKSSPSALR----ETIVEV------------------PNITWEDIGG---------LEGVKRELQ 119 (299)
Q Consensus 80 ---------~~~~~~~~~~~~~~~----~~l~~l------------------~~~l~~~~~r---------~p~~~~R~~ 119 (299)
.+...+......... .++..+ ++.+++++.| .|+..+|..
T Consensus 229 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~ 308 (444)
T 2zan_A 229 SIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAA 308 (444)
T ss_dssp EEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHH
T ss_pred eEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHH
Confidence 111111111111111 222211 3444444422 577777765
Q ss_pred hh----------cccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-----------h--c--CC
Q psy13773 120 EL----------VQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRRER--EK-----------L--A--GN 172 (299)
Q Consensus 120 ~l----------~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~--~~-----------~--~--~~ 172 (299)
.+ +.+.++..|+.+|+||||+||..+|++|++.|+++.......... .. . + +.
T Consensus 309 il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (444)
T 2zan_A 309 MFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGD 388 (444)
T ss_dssp HHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTS
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCc
Confidence 11 345677899999999999999999999999999987532000000 00 0 0 00
Q ss_pred cccc--cccccCCCCCCcccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q psy13773 173 PAAS--AAMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQ 223 (299)
Q Consensus 173 ~~~~--~~~~~~~~~~~~~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~ 223 (299)
.+.. .+...........+||.+||.+||++++|||+|+|+..|++|.++|.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~~~ 441 (444)
T 2zan_A 389 PGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFG 441 (444)
T ss_dssp TTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSSCT
T ss_pred ccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHc
Confidence 0000 00000111122358999999999999999999999999999987664
No 17
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.87 E-value=1.8e-22 Score=195.45 Aligned_cols=197 Identities=34% Similarity=0.538 Sum_probs=135.4
Q ss_pred eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH---
Q psy13773 3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--- 79 (299)
Q Consensus 3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--- 79 (299)
|.+|+.+|++|..+++.++.++||+||||||||+++++|+.+++..++.++|.++.+.+.++.+..++.+|..+...
T Consensus 220 i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~ 299 (489)
T 3hu3_A 220 VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299 (489)
T ss_dssp THHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCc
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999988654
Q ss_pred --------HHhhhhcCCCchhhh-------HHHhhc--------------CccchhhcCC-----------CccHHHHHh
Q psy13773 80 --------NFRYAMGKSSPSALR-------ETIVEV--------------PNITWEDIGG-----------LEGVKRELQ 119 (299)
Q Consensus 80 --------~~~~~~~~~~~~~~~-------~~l~~l--------------~~~l~~~~~r-----------~p~~~~R~~ 119 (299)
.+...+......... ..+..+ ++.+++++.+ .|+.++|.+
T Consensus 300 iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~ 379 (489)
T 3hu3_A 300 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379 (489)
T ss_dssp EEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHH
T ss_pred EEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHH
Confidence 222222211111111 111111 3334444422 677777776
Q ss_pred ---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCC-----C
Q psy13773 120 ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDE-----D 185 (299)
Q Consensus 120 ---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 185 (299)
.+..++++..++.++.||+++|+..||.+|++.|+++.... +...+. .
T Consensus 380 IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~------------------i~~~~~~~~~~~ 441 (489)
T 3hu3_A 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDL------------------IDLEDETIDAEV 441 (489)
T ss_dssp HHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTT------------------CCTTCSSCCHHH
T ss_pred HHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccc------------------ccccccccchhh
Confidence 23456788999999999999999999999999998875320 000000 0
Q ss_pred CCcccccHHHHHHHHHhccC-----------CCCHHHHHHHHH
Q psy13773 186 DPVPEITRAHFEEAMRFARR-----------SVNDADIRKYEM 217 (299)
Q Consensus 186 ~~~~~it~~Df~~AL~~~~P-----------sVsw~DIggL~~ 217 (299)
.....|+.+||.+|+++++| +|+|+||||+..
T Consensus 442 ~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 442 MNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp HHHCCBCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred cccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence 11236999999999998874 599999999864
No 18
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.79 E-value=1.7e-19 Score=168.11 Aligned_cols=202 Identities=31% Similarity=0.542 Sum_probs=141.1
Q ss_pred eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH---
Q psy13773 3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--- 79 (299)
Q Consensus 3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--- 79 (299)
|.+|+.+|+.|..+. .++.+++|+||+|||||+++++||..++..++.++|.++...+.++.+..++.+|..+...
T Consensus 100 i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~ 178 (357)
T 3d8b_A 100 VVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPA 178 (357)
T ss_dssp THHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCe
Confidence 456788888887654 6788999999999999999999999999999999999999999998888899999877642
Q ss_pred --------HHhhhhcCCCchhhh----HHHhhc-------------------CccchhhcC---------CCccHHHHHh
Q psy13773 80 --------NFRYAMGKSSPSALR----ETIVEV-------------------PNITWEDIG---------GLEGVKRELQ 119 (299)
Q Consensus 80 --------~~~~~~~~~~~~~~~----~~l~~l-------------------~~~l~~~~~---------r~p~~~~R~~ 119 (299)
.+...+......... .++..+ ++.+++++. ..|+..+|..
T Consensus 179 vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~ 258 (357)
T 3d8b_A 179 VIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQ 258 (357)
T ss_dssp EEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHH
T ss_pred EEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHH
Confidence 121111110000010 111111 233343332 2567776665
Q ss_pred hh----------cccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcc
Q psy13773 120 EL----------VQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP 189 (299)
Q Consensus 120 ~l----------~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
.+ +.+.++..++..+.||+++|+..||..|+..++++....... .+ ......
T Consensus 259 il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~--------------~~----~~~~~~ 320 (357)
T 3d8b_A 259 IVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIA--------------TI----TPDQVR 320 (357)
T ss_dssp HHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------------------------CC
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhc--------------cc----cccccC
Confidence 21 223346789999999999999999999999988754211000 00 011235
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q psy13773 190 EITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQ 223 (299)
Q Consensus 190 ~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~ 223 (299)
+|+.+||.+|+++++|+++.+++..|++|.+.+.
T Consensus 321 ~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g 354 (357)
T 3d8b_A 321 PIAYIDFENAFRTVRPSVSPKDLELYENWNKTFG 354 (357)
T ss_dssp CBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 7999999999999999999999999999998764
No 19
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.79 E-value=1.7e-19 Score=162.94 Aligned_cols=204 Identities=29% Similarity=0.495 Sum_probs=137.0
Q ss_pred eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH---
Q psy13773 3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--- 79 (299)
Q Consensus 3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--- 79 (299)
|.+|+.+|++|..+. .++.+++|+||||||||+++++++..++..++.++|.++...+.+.....++.+|..+...
T Consensus 37 i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (297)
T 3b9p_A 37 VILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPS 115 (297)
T ss_dssp THHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSE
T ss_pred HHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCc
Confidence 456777888887665 4678999999999999999999999999999999999999888888888888888877643
Q ss_pred --------HHhhhhcCCC---chhh-hHHHh---hc-----------------Cccchhhc---------CCCccHHHHH
Q psy13773 80 --------NFRYAMGKSS---PSAL-RETIV---EV-----------------PNITWEDI---------GGLEGVKREL 118 (299)
Q Consensus 80 --------~~~~~~~~~~---~~~~-~~~l~---~l-----------------~~~l~~~~---------~r~p~~~~R~ 118 (299)
.+...+.... .... ..++. .. ++.+++++ .+.|+..+|.
T Consensus 116 vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~ 195 (297)
T 3b9p_A 116 IIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRE 195 (297)
T ss_dssp EEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHH
T ss_pred EEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHH
Confidence 1111110000 0000 01111 11 22333332 2256666665
Q ss_pred hhh----------cccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCc
Q psy13773 119 QEL----------VQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPV 188 (299)
Q Consensus 119 ~~l----------~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
..+ +.+.++..++..+.||+++|+..+|..|+..++++....... .+ .....
T Consensus 196 ~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~--------------~~----~~~~~ 257 (297)
T 3b9p_A 196 LLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK--------------CL----DISAM 257 (297)
T ss_dssp HHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------------------------CCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcc--------------cc----ccccc
Confidence 421 223346789999999999999999999999998764311000 00 01123
Q ss_pred ccccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q psy13773 189 PEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQS 225 (299)
Q Consensus 189 ~~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~t 225 (299)
..|+.+||..|+++++|+++.+++..+++|.+.+.+.
T Consensus 258 ~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~ 294 (297)
T 3b9p_A 258 RAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDI 294 (297)
T ss_dssp CCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC------
T ss_pred CCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCe
Confidence 4799999999999999999999999999999988764
No 20
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.76 E-value=4.3e-18 Score=163.93 Aligned_cols=192 Identities=30% Similarity=0.469 Sum_probs=139.1
Q ss_pred CcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-------
Q psy13773 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME------- 79 (299)
Q Consensus 7 l~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~------- 79 (299)
+..|+.|..+++..+.+++|+||||||||+|+++||++.+..++.++|.++...+.+.....++.+|..+...
T Consensus 35 l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfI 114 (476)
T 2ce7_A 35 LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFI 114 (476)
T ss_dssp HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEE
Confidence 4578889999999999999999999999999999999999999999999999988888888899999988753
Q ss_pred ----HHhhhhcC----CCc---hhhhHHHhhc-----------------CccchhhcCC-----------CccHHHHHh-
Q psy13773 80 ----NFRYAMGK----SSP---SALRETIVEV-----------------PNITWEDIGG-----------LEGVKRELQ- 119 (299)
Q Consensus 80 ----~~~~~~~~----~~~---~~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~~- 119 (299)
.+...+.. ... ....+++..+ ++.+++++.| .|+.++|.+
T Consensus 115 DEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~I 194 (476)
T 2ce7_A 115 DEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKI 194 (476)
T ss_dssp ETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHH
T ss_pred echhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHH
Confidence 11111110 000 0111222211 4445554432 688777765
Q ss_pred --------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccc
Q psy13773 120 --------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEI 191 (299)
Q Consensus 120 --------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 191 (299)
.+..++++..+|..|.||+|+||..+|.+|+..|.++. ...|
T Consensus 195 l~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~------------------------------~~~I 244 (476)
T 2ce7_A 195 LEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG------------------------------RDKI 244 (476)
T ss_dssp HHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------------------------CSSB
T ss_pred HHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC------------------------------CCee
Confidence 23467889999999999999999999999998886532 1368
Q ss_pred cHHHHHHHHHhccCC---------------CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q psy13773 192 TRAHFEEAMRFARRS---------------VNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPN 239 (299)
Q Consensus 192 t~~Df~~AL~~~~Ps---------------Vsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~ 239 (299)
+.+||..|+.++.+. +.|+++|. ..+.| ++.|++-+.
T Consensus 245 ~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~---------a~~~~--~l~~~~~~~ 296 (476)
T 2ce7_A 245 TMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGH---------AVVST--VVPNGEPVH 296 (476)
T ss_dssp CHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHH---------HHHHH--HSTTCCCCC
T ss_pred cHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhh---------HHHhh--ccCCccccc
Confidence 999999999987531 44555554 24677 888877543
No 21
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.74 E-value=2.6e-18 Score=166.32 Aligned_cols=192 Identities=31% Similarity=0.476 Sum_probs=140.0
Q ss_pred CcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-------
Q psy13773 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME------- 79 (299)
Q Consensus 7 l~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~------- 79 (299)
+..|+.|..+++..+.+++|+||||||||||+++||++++.+++.++|.++...+.+.....++.+|+.+...
T Consensus 50 l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 50 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 4567888888888899999999999999999999999999999999999998888888888888888876421
Q ss_pred ----HHhhhhcCC---Cch----hhhHHHhhc-----------------CccchhhcCC-----------CccHHHHHhh
Q psy13773 80 ----NFRYAMGKS---SPS----ALRETIVEV-----------------PNITWEDIGG-----------LEGVKRELQE 120 (299)
Q Consensus 80 ----~~~~~~~~~---~~~----~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~~~ 120 (299)
.+...+... ... ...+++.++ ++.+++++.| .|+..+|.+.
T Consensus 130 DEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~I 209 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 209 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHH
T ss_pred ehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHH
Confidence 111111110 000 111233222 4556655533 6888877762
Q ss_pred ---------hcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccc
Q psy13773 121 ---------LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEI 191 (299)
Q Consensus 121 ---------l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 191 (299)
+..++++..+|..+.||+|+||+.+|.+|+..|.++. ...|
T Consensus 210 L~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~------------------------------~~~I 259 (499)
T 2dhr_A 210 LRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG------------------------------RRKI 259 (499)
T ss_dssp HHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC------------------------------CSSC
T ss_pred HHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC------------------------------CCcc
Confidence 3457788999999999999999999999988775531 1368
Q ss_pred cHHHHHHHHHhccCC---------------CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q psy13773 192 TRAHFEEAMRFARRS---------------VNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPN 239 (299)
Q Consensus 192 t~~Df~~AL~~~~Ps---------------Vsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~ 239 (299)
+.+||.+|++++.+. |.|+++|. ..+.| .+.|++-+.
T Consensus 260 t~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~---------av~~~--~l~~~~~v~ 311 (499)
T 2dhr_A 260 TMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGH---------ALAAH--FLEHADGVH 311 (499)
T ss_dssp CSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHH---------HHHHC--CSSSCCCCC
T ss_pred CHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHH---------HHHHh--hcCCCCeee
Confidence 999999999987532 45667665 24778 888887544
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.73 E-value=7.8e-18 Score=158.36 Aligned_cols=204 Identities=29% Similarity=0.475 Sum_probs=135.2
Q ss_pred eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH---
Q psy13773 3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--- 79 (299)
Q Consensus 3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--- 79 (299)
|.+|+.+|++|..+. .++.++||+||+|||||+++++||.+++..++.++|.++...+.+..+..++.+|..+...
T Consensus 131 ~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~ 209 (389)
T 3vfd_A 131 VILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPS 209 (389)
T ss_dssp THHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSE
T ss_pred HHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCe
Confidence 456777888887765 4578999999999999999999999999999999999999999999999999999887653
Q ss_pred --------HHhhhhcCCCchhhh----HHHhhc-------------------CccchhhcC---------CCccHHHHHh
Q psy13773 80 --------NFRYAMGKSSPSALR----ETIVEV-------------------PNITWEDIG---------GLEGVKRELQ 119 (299)
Q Consensus 80 --------~~~~~~~~~~~~~~~----~~l~~l-------------------~~~l~~~~~---------r~p~~~~R~~ 119 (299)
.+...+......... .++..+ ++.+++++. ..|+.++|..
T Consensus 210 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~ 289 (389)
T 3vfd_A 210 IIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLL 289 (389)
T ss_dssp EEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHH
T ss_pred EEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHH
Confidence 111111110000001 111110 233343332 1577777765
Q ss_pred hh----------cccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcc
Q psy13773 120 EL----------VQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP 189 (299)
Q Consensus 120 ~l----------~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
.+ +.+.++..++..+.||+++++..||..|+..++++..... ...+ ......
T Consensus 290 il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~--------------~~~~----~~~~~~ 351 (389)
T 3vfd_A 290 LLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQ--------------VKNM----SASEMR 351 (389)
T ss_dssp HHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC-----------------CC----SSSCCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhh--------------hhcc----chhhcC
Confidence 22 1223457899999999999999999999999987642100 0000 111235
Q ss_pred cccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q psy13773 190 EITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQS 225 (299)
Q Consensus 190 ~it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~t 225 (299)
.|+.+||..|+++++|+++.+++..|++|.+.+.++
T Consensus 352 ~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~ 387 (389)
T 3vfd_A 352 NIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDT 387 (389)
T ss_dssp CCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC--
T ss_pred CcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCc
Confidence 799999999999999999999999999998887553
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.72 E-value=2.1e-17 Score=148.29 Aligned_cols=188 Identities=36% Similarity=0.551 Sum_probs=129.2
Q ss_pred eeccCcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH---
Q psy13773 3 STYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME--- 79 (299)
Q Consensus 3 v~~pl~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~--- 79 (299)
+.+|+..|+.|..+++..+.+++|+||||||||++++++|..++..++.+++.++...+.+.....++.+|..+...
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (285)
T 3h4m_A 33 VELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPS 112 (285)
T ss_dssp THHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCe
Confidence 45678889999999999999999999999999999999999999999999999999988998888899999877643
Q ss_pred --------HHhhhhcCCC---c----hhhhHHHhhc-----------------CccchhhcC---C--------CccHHH
Q psy13773 80 --------NFRYAMGKSS---P----SALRETIVEV-----------------PNITWEDIG---G--------LEGVKR 116 (299)
Q Consensus 80 --------~~~~~~~~~~---~----~~~~~~l~~l-----------------~~~l~~~~~---r--------~p~~~~ 116 (299)
.+...+.... . ......+..+ ++.+++++. | .|+.++
T Consensus 113 vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~ 192 (285)
T 3h4m_A 113 IIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKG 192 (285)
T ss_dssp EEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHH
T ss_pred EEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHH
Confidence 1221111110 0 0111112111 333333331 1 577777
Q ss_pred HHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCC
Q psy13773 117 ELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDP 187 (299)
Q Consensus 117 R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (299)
|.. .+..++++..++..+.||+++|++.+|..|...|+++..
T Consensus 193 r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~----------------------------- 243 (285)
T 3h4m_A 193 RLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELR----------------------------- 243 (285)
T ss_dssp HHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTC-----------------------------
T ss_pred HHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------------------
Confidence 665 223466889999999999999999999999998877531
Q ss_pred cccccHHHHHHHHHhccC--CCCHHHHHHHHHHHH
Q psy13773 188 VPEITRAHFEEAMRFARR--SVNDADIRKYEMFAQ 220 (299)
Q Consensus 188 ~~~it~~Df~~AL~~~~P--sVsw~DIggL~~vk~ 220 (299)
..|+.+||.+|++++.+ ..+...-.-+..|..
T Consensus 244 -~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~ 277 (285)
T 3h4m_A 244 -DYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYR 277 (285)
T ss_dssp -SSBCHHHHHHHHHHHHHHHCCC------------
T ss_pred -CcCCHHHHHHHHHHHHhccccccCCchHHHHHHH
Confidence 36999999999998753 233333344444443
No 24
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.71 E-value=1.4e-16 Score=141.05 Aligned_cols=168 Identities=34% Similarity=0.560 Sum_probs=119.2
Q ss_pred CcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-------
Q psy13773 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME------- 79 (299)
Q Consensus 7 l~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~------- 79 (299)
+.+|+.|..++...+.+++|+|||||||||++++|++.++.+++.++|.++...+.+.....++.+|+.+...
T Consensus 31 ~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~i 110 (257)
T 1lv7_A 31 LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFI 110 (257)
T ss_dssp HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEE
T ss_pred HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehh
Confidence 5667788888888889999999999999999999999999999999999998888888888999999887642
Q ss_pred ----HHhhhhcCC---Cc----hhhhHHHhhc-----------------CccchhhcCC-----------CccHHHHHh-
Q psy13773 80 ----NFRYAMGKS---SP----SALRETIVEV-----------------PNITWEDIGG-----------LEGVKRELQ- 119 (299)
Q Consensus 80 ----~~~~~~~~~---~~----~~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~~- 119 (299)
.+...+... .. ......+..+ ++.+++++.+ .|+.++|.+
T Consensus 111 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~i 190 (257)
T 1lv7_A 111 DEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQI 190 (257)
T ss_dssp TTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHH
T ss_pred hhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHH
Confidence 111111110 00 0111222111 3444444422 577777754
Q ss_pred --------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccc
Q psy13773 120 --------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEI 191 (299)
Q Consensus 120 --------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 191 (299)
.+..++++..++..+.||+++|+..+|.+|+..|.++.. ..|
T Consensus 191 l~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~------------------------------~~i 240 (257)
T 1lv7_A 191 LKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK------------------------------RVV 240 (257)
T ss_dssp HHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC------------------------------SSB
T ss_pred HHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC------------------------------Ccc
Confidence 233567788999999999999999999999988866421 369
Q ss_pred cHHHHHHHHHhcc
Q psy13773 192 TRAHFEEAMRFAR 204 (299)
Q Consensus 192 t~~Df~~AL~~~~ 204 (299)
+.+||.+|++++.
T Consensus 241 ~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 241 SMVEFEKAKDKIM 253 (257)
T ss_dssp CHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHh
Confidence 9999999998875
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.69 E-value=1.9e-16 Score=139.93 Aligned_cols=163 Identities=37% Similarity=0.589 Sum_probs=117.0
Q ss_pred cChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--------
Q psy13773 8 EHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-------- 79 (299)
Q Consensus 8 ~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-------- 79 (299)
..+..+..+++..+.+++|+||||||||||+++|++.+..+++.+++.++...+.+.....++.+|+.+...
T Consensus 36 ~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~D 115 (254)
T 1ixz_A 36 KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFID 115 (254)
T ss_dssp HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEeh
Confidence 456677777888888899999999999999999999999999999999988877777777888888876421
Q ss_pred ---HHhhhhcCC---Cchh----hhHHHhhc-----------------CccchhhcCC-----------CccHHHHHh--
Q psy13773 80 ---NFRYAMGKS---SPSA----LRETIVEV-----------------PNITWEDIGG-----------LEGVKRELQ-- 119 (299)
Q Consensus 80 ---~~~~~~~~~---~~~~----~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~~-- 119 (299)
.+...+... .... ..+.+..+ |+.+++++.| .|+.++|.+
T Consensus 116 eid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il 195 (254)
T 1ixz_A 116 EIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQIL 195 (254)
T ss_dssp THHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHH
T ss_pred hhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHH
Confidence 121111110 0000 11222111 5556665532 677777765
Q ss_pred -------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCccccc
Q psy13773 120 -------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEIT 192 (299)
Q Consensus 120 -------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 192 (299)
.+..++++..+|.+++||+|+|++.+|.+|+..|.++. ...||
T Consensus 196 ~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~------------------------------~~~I~ 245 (254)
T 1ixz_A 196 RIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG------------------------------RRKIT 245 (254)
T ss_dssp HHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------------------------CSSBC
T ss_pred HHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------------------CCCcC
Confidence 23457789999999999999999999999988876532 13689
Q ss_pred HHHHHHHH
Q psy13773 193 RAHFEEAM 200 (299)
Q Consensus 193 ~~Df~~AL 200 (299)
.+||++|+
T Consensus 246 ~~dl~~a~ 253 (254)
T 1ixz_A 246 MKDLEEAA 253 (254)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999986
No 26
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.3e-18 Score=161.77 Aligned_cols=57 Identities=11% Similarity=0.051 Sum_probs=53.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.|.|+|+|||||+++|++|.+.|+| |++|||+|.. |++-..|+|||||||||||+|-
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~--Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIEL--PVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHH--HHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH--HHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 3789999999999999999999999 9999999987 8888899999999999999973
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.64 E-value=4.1e-16 Score=137.76 Aligned_cols=169 Identities=31% Similarity=0.528 Sum_probs=109.4
Q ss_pred CcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-------
Q psy13773 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME------- 79 (299)
Q Consensus 7 l~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~------- 79 (299)
+..|+.|..+++..+.+++|+||+|||||++++++|.+++..++.++|.++...+.+.....++.+|..+...
T Consensus 25 ~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~i 104 (262)
T 2qz4_A 25 LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYI 104 (262)
T ss_dssp HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEE
Confidence 5667888888889999999999999999999999999999999999999998888888888888888877643
Q ss_pred ----HHhhhhcC--------CCchhhhHHHhhc-----------------CccchhhcC---C--------CccHHHHHh
Q psy13773 80 ----NFRYAMGK--------SSPSALRETIVEV-----------------PNITWEDIG---G--------LEGVKRELQ 119 (299)
Q Consensus 80 ----~~~~~~~~--------~~~~~~~~~l~~l-----------------~~~l~~~~~---r--------~p~~~~R~~ 119 (299)
.+...+.. ........++..+ ++.+++++. | .|+.++|.+
T Consensus 105 Deid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~ 184 (262)
T 2qz4_A 105 DEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERRE 184 (262)
T ss_dssp ECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHH
T ss_pred eCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHH
Confidence 11111100 0011111222211 333334332 2 577777765
Q ss_pred hh---ccc--------CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCc
Q psy13773 120 EL---VQD--------VDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPV 188 (299)
Q Consensus 120 ~l---~~~--------v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
.+ +.. +.+..++..+.||+++|++.+|..|+..|.++..
T Consensus 185 il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~------------------------------ 234 (262)
T 2qz4_A 185 IFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGH------------------------------ 234 (262)
T ss_dssp HHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC------------------------------------
T ss_pred HHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC------------------------------
Confidence 21 111 1236789999999999999999999888876532
Q ss_pred ccccHHHHHHHHHhccC
Q psy13773 189 PEITRAHFEEAMRFARR 205 (299)
Q Consensus 189 ~~it~~Df~~AL~~~~P 205 (299)
..|+.+||..|++++.+
T Consensus 235 ~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 235 TSVHTLNFEYAVERVLA 251 (262)
T ss_dssp --CCBCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcc
Confidence 25889999999998765
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.64 E-value=1.3e-15 Score=136.56 Aligned_cols=163 Identities=37% Similarity=0.590 Sum_probs=115.7
Q ss_pred cChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH--------
Q psy13773 8 EHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-------- 79 (299)
Q Consensus 8 ~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~-------- 79 (299)
..+..+..+++..+.+++|+||||||||||+++|++.+..+++.+++.++...+.+.....+..+|+.+...
T Consensus 60 ~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iD 139 (278)
T 1iy2_A 60 KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFID 139 (278)
T ss_dssp HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEE
T ss_pred HCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehh
Confidence 345667777777788899999999999999999999999999999999988777777777788888877531
Q ss_pred ---HHhhhhcCC---Cch----hhhHHHhhc-----------------CccchhhcCC-----------CccHHHHHh--
Q psy13773 80 ---NFRYAMGKS---SPS----ALRETIVEV-----------------PNITWEDIGG-----------LEGVKRELQ-- 119 (299)
Q Consensus 80 ---~~~~~~~~~---~~~----~~~~~l~~l-----------------~~~l~~~~~r-----------~p~~~~R~~-- 119 (299)
.+...+... ... ...+.+.++ ++.+++++.+ .|+.++|.+
T Consensus 140 eid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il 219 (278)
T 1iy2_A 140 EIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQIL 219 (278)
T ss_dssp THHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHH
T ss_pred hhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHH
Confidence 111111100 000 011222211 5556655422 677777765
Q ss_pred -------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCccccc
Q psy13773 120 -------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEIT 192 (299)
Q Consensus 120 -------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 192 (299)
.+..++++..+|.+++||+|+||+.+|.+|+..|.++. ...|+
T Consensus 220 ~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~------------------------------~~~I~ 269 (278)
T 1iy2_A 220 RIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG------------------------------RRKIT 269 (278)
T ss_dssp HHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------------------------CCSBC
T ss_pred HHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------------------------------CCCcC
Confidence 23457789999999999999999999999988776532 13689
Q ss_pred HHHHHHHH
Q psy13773 193 RAHFEEAM 200 (299)
Q Consensus 193 ~~Df~~AL 200 (299)
.+||.+|+
T Consensus 270 ~~dl~~a~ 277 (278)
T 1iy2_A 270 MKDLEEAA 277 (278)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999986
No 29
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.8e-17 Score=156.42 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=54.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
+|+|+|+|||||+++|++|++.|+| |++|||+|.. |++-..|||||||||||||+|-
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~--pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVEL--PLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHH--HHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHH--HhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 5889999999999999999999999 9999999976 8889999999999999999873
No 30
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.1e-17 Score=155.05 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=53.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
+|.|+|+||||++++|++|.+.|.| |++||++|.. |++-..|||||||||||||+|-
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~--pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVL--PMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHH--HHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHH--HHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 4789999999999999999999999 9999999975 7777889999999999999874
No 31
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.56 E-value=4.9e-17 Score=153.38 Aligned_cols=56 Identities=20% Similarity=0.161 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC-CCCCCCCcccccCCCCCCCeeee
Q psy13773 205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPN-QSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~-~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
|+|+|+|||||+++|++|.+.|+| |++||++|. -|++-..|||||||||||||+|-
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~--Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVEL--PLTHPELYEEMGIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHH--HHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHH--HHhCHHHHHhCCCCCCCCCceECCCCchHHHHH
Confidence 779999999999999999999999 999999997 46777899999999999999874
No 32
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.56 E-value=4.1e-17 Score=155.16 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=52.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILL 261 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll 261 (299)
+|.|+|+|||||+++|++|.+.|+| |++||++|.. |++-..|||||||||||||+|
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~--pl~~p~~f~~~g~~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIEL--PLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHH--HHHCHHHHHHHCCCCCCEEEEESCTTSSHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHH--HHhCHHHHHhCCCCCCCeEEEECCCCCcHHHH
Confidence 4789999999999999999999999 9999999975 677788999999999999986
No 33
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.54 E-value=2.1e-16 Score=140.53 Aligned_cols=171 Identities=32% Similarity=0.542 Sum_probs=117.9
Q ss_pred CcChhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHH-------
Q psy13773 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME------- 79 (299)
Q Consensus 7 l~~p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~------- 79 (299)
+..|+.|..+++..+.+++|+||+|||||++++++|..++..++.++|.++...+.+.....++.+|..+...
T Consensus 30 ~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~i 109 (268)
T 2r62_A 30 LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFI 109 (268)
T ss_dssp HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEE
T ss_pred HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEE
Confidence 5678888888888889999999999999999999999999999999999988877777666667777776542
Q ss_pred ----HHhhhhc--------CCCchhhhHHHhh------------------cCccchhhcCC-----------CccHHHHH
Q psy13773 80 ----NFRYAMG--------KSSPSALRETIVE------------------VPNITWEDIGG-----------LEGVKREL 118 (299)
Q Consensus 80 ----~~~~~~~--------~~~~~~~~~~l~~------------------l~~~l~~~~~r-----------~p~~~~R~ 118 (299)
.+...+. .........++.. .++.+++++.+ .|+.++|.
T Consensus 110 DEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~ 189 (268)
T 2r62_A 110 DEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRV 189 (268)
T ss_dssp SCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHH
T ss_pred eChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHH
Confidence 1111100 0000000011111 13333333321 45655555
Q ss_pred h---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcc
Q psy13773 119 Q---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVP 189 (299)
Q Consensus 119 ~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
+ .+..++++..++..+.||+|+|+..+|.+|+..|..+. ..
T Consensus 190 ~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~------------------------------~~ 239 (268)
T 2r62_A 190 EILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN------------------------------QK 239 (268)
T ss_dssp HHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC------------------------------CC
T ss_pred HHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------------------cC
Confidence 4 12345677889999999999999999999977764321 13
Q ss_pred cccHHHHHHHHHhccCCC
Q psy13773 190 EITRAHFEEAMRFARRSV 207 (299)
Q Consensus 190 ~it~~Df~~AL~~~~PsV 207 (299)
.|+.+||.+|++++.|+.
T Consensus 240 ~i~~~~~~~a~~~~~~~~ 257 (268)
T 2r62_A 240 EVRQQHLKEAVERGIAGL 257 (268)
T ss_dssp SCCHHHHHTSCTTCCCCC
T ss_pred CcCHHHHHHHHHHHhhcc
Confidence 689999999999998864
No 34
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=8e-17 Score=152.90 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=53.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
+|.|+|+|||||+++|++|.+.|.| |++||++|.. |++-.-|+|||||||||||+|-
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~--pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVEL--PLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHH--HHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHH--HHhCHHHHHhCCCCCCceEEEECCCCCCHHHHH
Confidence 4779999999999999999999999 9999999986 7888899999999999999874
No 35
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.37 E-value=1.8e-14 Score=132.22 Aligned_cols=57 Identities=19% Similarity=0.178 Sum_probs=53.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.|+|+|+||+|++++|+.+.+.+.| |++||++|..+.....|+|||||||||||+|.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~--p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVIL--PIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHH--HHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHH--HHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 4789999999999999999999999 99999999977667789999999999999985
No 36
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.31 E-value=3.3e-12 Score=129.61 Aligned_cols=60 Identities=23% Similarity=0.371 Sum_probs=43.5
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHHhh----------cCCeecccchhhh--hccccccHHHHHHHHHHHH
Q psy13773 18 MQPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL--TMWFGESEANVRDIFDKVT 77 (299)
Q Consensus 18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l----------~~~~i~i~~~~l~--~~~~g~~~~~i~~~f~~a~ 77 (299)
...+..++|+||+|||||+++++++..+ +..++.+++..+. ..+.+..+..++.+|..+.
T Consensus 204 ~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~ 275 (758)
T 1r6b_X 204 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE 275 (758)
T ss_dssp SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHS
T ss_pred ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHH
Confidence 3467789999999999999999999976 3344556655554 3566777788888887654
No 37
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.28 E-value=9e-12 Score=112.67 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=54.5
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHH
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVT 77 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~ 77 (299)
.+++.+.+++|+||||||||+++++||..++.+++.++|.++.+.+.|..+..++.+|..+.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~ 92 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 92 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999998874
No 38
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.22 E-value=5.4e-12 Score=128.14 Aligned_cols=56 Identities=23% Similarity=0.473 Sum_probs=38.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhh----------cCCeecccchhhhhccccccHHHHHHHHHHHH
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLTMWFGESEANVRDIFDKVT 77 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l----------~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~ 77 (299)
.....++|+||||||||+++++||..+ +..++.+++ ...+.|+.+..++.+|..+.
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~ 264 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIR 264 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHH
Confidence 456689999999999999999999987 556666666 44566777778888888765
No 39
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.22 E-value=2.3e-13 Score=122.15 Aligned_cols=57 Identities=23% Similarity=0.135 Sum_probs=44.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.|+|+|+||||++++|+++.+.|.| |++||+.|.. ++.-..|+|||||||||||+|.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~--~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILA--PVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTH--HHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH--HhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 4789999999999999999999999 9999997753 5566778999999999999884
No 40
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.21 E-value=6e-13 Score=121.85 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=54.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 203 ARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 203 ~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
-.|.|+|+||+|++++|+.+.+.+.| |++||++|..+.+...|+|||||||||||+|.
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~--~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVIL--PVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHH--HHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHH--HHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 35889999999999999999999999 99999999998888889999999999999875
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.20 E-value=5.1e-13 Score=124.13 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=52.6
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 196 FEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 196 f~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
+...+....|.++|+||+|++++++.+.+.+.| |++||++|..+.+...|+|||||||||||+|.
T Consensus 37 ~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~--~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 37 LSSAILSEKPNVKWEDVAGLEGAKEALKEAVIL--PVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp ----------CCCGGGSCCGGGHHHHHHHHTHH--HHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred HhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHH--HHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 334444455789999999999999999999999 99999999998888889999999999999874
No 42
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.16 E-value=1.1e-12 Score=125.41 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=54.7
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 198 EAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 198 ~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
..+....|.++|+||+|++++|+.+.+.+.| |++||++|..+.....|+|||||||||||+|.
T Consensus 122 ~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~--p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 122 GAIVIERPNVKWSDVAGLEGAKEALKEAVIL--PIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp --CBCCCCCCCGGGSCSCHHHHHHHHHHHTH--HHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred cceeccCCCCCHHHhcCHHHHHHHHHHHHHH--HhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 3344445889999999999999999999999 99999999976666789999999999999874
No 43
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.15 E-value=1.6e-11 Score=90.16 Aligned_cols=64 Identities=28% Similarity=0.422 Sum_probs=49.2
Q ss_pred hcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHH
Q psy13773 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAM 200 (299)
Q Consensus 121 l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL 200 (299)
+..++|+..||.+|+||||+||..+|++|++.|+++. ...|+.+||..|+
T Consensus 19 ~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------------------~~~i~~~df~~Al 68 (83)
T 3aji_B 19 LSEEVDLEDYVARPDKISGADINSICQESGMLAVREN------------------------------RYIVLAKDFEKAY 68 (83)
T ss_dssp BCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC------------------------------CSSBCHHHHHHHH
T ss_pred CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------------------cCCcCHHHHHHHH
Confidence 3468899999999999999999999999999998753 1469999999999
Q ss_pred HhccCCCCHHHHHHH
Q psy13773 201 RFARRSVNDADIRKY 215 (299)
Q Consensus 201 ~~~~PsVsw~DIggL 215 (299)
++++|+++ +++..|
T Consensus 69 ~~~~ps~~-~~l~~y 82 (83)
T 3aji_B 69 KTVIKKDE-QEHEFY 82 (83)
T ss_dssp HHHCC----------
T ss_pred HHHccCch-HHHHhc
Confidence 99999999 776443
No 44
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.15 E-value=5.2e-13 Score=121.18 Aligned_cols=57 Identities=19% Similarity=0.152 Sum_probs=52.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.|.|+|+||+|++++|+.+.+.+.| |++||+.|.+ ++....|+|||||||||||+|.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~--~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQY--PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHH--HHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH--HhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 3789999999999999999999999 9999999875 5677789999999999999985
No 45
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.12 E-value=6.9e-12 Score=116.59 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=97.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|+||||||||||+|+|++...+ +.+.+++.++... ....++.+.. ...+.++.......
T Consensus 47 vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~----~~~~~~~~r~---~Ig~v~Q~~~l~~~ 119 (366)
T 3tui_C 47 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL----SESELTKARR---QIGMIFQHFNLLSS 119 (366)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSC----CHHHHHHHHT---TEEEECSSCCCCTT
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcC----CHHHHHHHhC---cEEEEeCCCccCCC
Confidence 5788899999999999999999999999998765 5577777776543 2222222111 11122211111111
Q ss_pred -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
...+.+.. +.... -....+..+|+..+++.+++..++ ++...||||++|+++.+.++..-.
T Consensus 120 ~TV~env~~-~~~~~--~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P-------------- 182 (366)
T 3tui_C 120 RTVFGNVAL-PLELD--NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP-------------- 182 (366)
T ss_dssp SCHHHHHHH-HHHHS--CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCC--------------
T ss_pred CCHHHHHHH-HHHhc--CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCC--------------
Confidence 11122211 10000 011123456778888888886554 566889999999998766543211
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+...+.+.|++++
T Consensus 183 -------~lLLlDEPTs~LD~~~~~~i~~lL~~l~ 210 (366)
T 3tui_C 183 -------KVLLCDQATSALDPATTRSILELLKDIN 210 (366)
T ss_dssp -------SEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred -------CEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 1244667777888888888888877763
No 46
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.12 E-value=5.7e-11 Score=87.90 Aligned_cols=66 Identities=26% Similarity=0.410 Sum_probs=56.9
Q ss_pred CccHHHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Q psy13773 111 LEGVKRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMET 181 (299)
Q Consensus 111 ~p~~~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (299)
.|+.++|.+ .+..++|++.||.+|+||||+||..||++|++.|+++..
T Consensus 10 ~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~----------------------- 66 (86)
T 2krk_A 10 HPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR----------------------- 66 (86)
T ss_dssp CCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred CcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC-----------------------
Confidence 588888876 234689999999999999999999999999999988641
Q ss_pred CCCCCCcccccHHHHHHHHHhccCC
Q psy13773 182 EDEDDPVPEITRAHFEEAMRFARRS 206 (299)
Q Consensus 182 ~~~~~~~~~it~~Df~~AL~~~~Ps 206 (299)
..|+.+||++|+++++|.
T Consensus 67 -------~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 67 -------VHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp -------SEECHHHHHHHHHHHHCC
T ss_pred -------CCCCHHHHHHHHHHHccC
Confidence 479999999999999874
No 47
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.07 E-value=2.5e-11 Score=108.37 Aligned_cols=161 Identities=14% Similarity=0.129 Sum_probs=97.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-Cc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~ 90 (299)
++|.+.+++.++|+||||||||||+|+|++.+. .+.+.+++.++... ....++. ...+..+.... ..
T Consensus 30 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~----~~~~~~~------~i~~v~q~~~~~~~ 99 (266)
T 4g1u_C 30 VSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSW----QPKALAR------TRAVMRQYSELAFP 99 (266)
T ss_dssp EEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTS----CHHHHHH------HEEEECSCCCCCSC
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC----CHHHHhh------eEEEEecCCccCCC
Confidence 567889999999999999999999999999775 46677887776432 1111111 11122221111 11
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
....+.+..... ........+++..+++.+++..+. +....||||++|+++...++..+-.
T Consensus 100 ~tv~e~l~~~~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~------------- 161 (266)
T 4g1u_C 100 FSVSEVIQMGRA-----PYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQ------------- 161 (266)
T ss_dssp CBHHHHHHGGGT-----TSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCC-------------
T ss_pred CCHHHHHHhhhh-----hcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccc-------------
Confidence 122222211100 011234566777888888885554 4557899999999988765543100
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.......+..+|+....++.+...+.+.|++.+
T Consensus 162 --~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~ 194 (266)
T 4g1u_C 162 --PQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194 (266)
T ss_dssp --SSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHH
T ss_pred --cCCCCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 000011345677777888888888888877663
No 48
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.07 E-value=1.5e-10 Score=85.97 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=50.4
Q ss_pred hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHH
Q psy13773 120 ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEA 199 (299)
Q Consensus 120 ~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~A 199 (299)
.+..++|+..||.+|+||||+||..||.+|++.|+++.. ..|+.+||+.|
T Consensus 18 ~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~------------------------------~~i~~~df~~A 67 (88)
T 3vlf_B 18 SVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR------------------------------KVATEKDFLKA 67 (88)
T ss_dssp CBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC------------------------------SSBCHHHHHHH
T ss_pred CCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc------------------------------ccCCHHHHHHH
Confidence 345789999999999999999999999999999998742 36999999999
Q ss_pred HHhccCCCCH
Q psy13773 200 MRFARRSVND 209 (299)
Q Consensus 200 L~~~~PsVsw 209 (299)
++++++.+..
T Consensus 68 l~~v~~~~~~ 77 (88)
T 3vlf_B 68 VDKVISGYKK 77 (88)
T ss_dssp HHHHTC----
T ss_pred HHHHhcCccc
Confidence 9999987644
No 49
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.07 E-value=2.4e-11 Score=113.58 Aligned_cols=155 Identities=14% Similarity=0.167 Sum_probs=93.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.+.|+||||||||||+|+|++...+ +.+.+++.++...... .+.+..+|+ .....+.
T Consensus 22 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~VfQ----------~~~l~p~ 89 (381)
T 3rlf_A 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQ----------SYALYPH 89 (381)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEEECT----------TCCCCTT
T ss_pred eEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEEEec----------CCcCCCC
Confidence 5778899999999999999999999999998765 5567777766432111 111111111 1111111
Q ss_pred -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
...+.+.. .+........+..+|+..+++.+++..+. ++...||||++|+++...++..-.
T Consensus 90 ltV~eni~~---~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P-------------- 152 (381)
T 3rlf_A 90 LSVAENMSF---GLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP-------------- 152 (381)
T ss_dssp SCHHHHHTH---HHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCC--------------
T ss_pred CCHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCC--------------
Confidence 11111110 00000011123456778888888886554 566889999999998776554311
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.+.+.|++.+
T Consensus 153 -------~lLLLDEPts~LD~~~~~~l~~~l~~l~ 180 (381)
T 3rlf_A 153 -------SVFLLDEPLSNLDAALRVQMRIEISRLH 180 (381)
T ss_dssp -------SEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred -------CEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 1244666777777777777777776653
No 50
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.05 E-value=2.5e-11 Score=106.49 Aligned_cols=162 Identities=12% Similarity=0.117 Sum_probs=95.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|+||||||||||+|+|++...+ +.+.+++.++... ........+.. ...+.++.......
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~----~~~~~~~~~~~--~i~~v~Q~~~l~~~ 97 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDL----DDDELTKIRRD--KIGFVFQQFNLIPL 97 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC----CHHHHHHHHHH--HEEEECTTCCCCTT
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccC----CHHHHHHHhhc--cEEEEecCCccCCC
Confidence 5778899999999999999999999999998765 4566777665432 11222111111 11222222221111
Q ss_pred -hhhHHHhhcCccchh-hcCCCccHHHHHhhhcccCCHHH-H-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 -ALRETIVEVPNITWE-DIGGLEGVKRELQELVQDVDLNY-I-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 92 -~~~~~l~~l~~~l~~-~~~r~p~~~~R~~~l~~~v~l~~-L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
...+.+.. +..... ......+..+++..+++.+++.. + .+....||||++|+++...++..-.
T Consensus 98 ~tv~enl~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p------------ 164 (235)
T 3tif_A 98 LTALENVEL-PLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNP------------ 164 (235)
T ss_dssp SCHHHHHHH-HHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCC------------
T ss_pred CcHHHHHHH-HHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCC------------
Confidence 22222211 000000 00011233456667777777744 3 4567889999999998766543311
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.-+..+|+....++.+.+.+.+.|++.
T Consensus 165 ---------~llllDEPts~LD~~~~~~i~~~l~~l 191 (235)
T 3tif_A 165 ---------PIILADQPTWALDSKTGEKIMQLLKKL 191 (235)
T ss_dssp ---------SEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred ---------CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 135567788888888888888888766
No 51
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.02 E-value=3.6e-11 Score=111.60 Aligned_cols=155 Identities=16% Similarity=0.228 Sum_probs=90.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhcccc--ccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFG--ESEANVRDIFDKVTMENFRYAMGKSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g--~~~~~i~~~f~~a~~~~~~~~~~~~~ 89 (299)
++|.+.+++.+.|+||||||||||+|+|++...+ +.+.+++.++...... ...+.+..+|+ .....
T Consensus 23 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ----------~~~l~ 92 (359)
T 3fvq_A 23 ISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQ----------EGVLF 92 (359)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECT----------TCCCC
T ss_pred eEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeC----------CCcCC
Confidence 5778899999999999999999999999998765 5577777766321000 00111111111 11111
Q ss_pred ch-hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PS-ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 90 ~~-~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
+. ...+.+. +... ..........+|+..+++.+++..++ ++...||||++|+++...++..-.
T Consensus 93 p~ltV~eni~-~~l~--~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P------------ 157 (359)
T 3fvq_A 93 PHLTVYRNIA-YGLG--NGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDP------------ 157 (359)
T ss_dssp TTSCHHHHHH-TTST--TSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC------------
T ss_pred CCCCHHHHHH-HHHH--HcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC------------
Confidence 11 1112221 1100 00011234456788888888886654 566889999999998766554311
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHh
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRF 202 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~ 202 (299)
..+..+|+....++.+.+.+.+.+.+
T Consensus 158 ---------~lLLLDEPts~LD~~~r~~l~~~l~~ 183 (359)
T 3fvq_A 158 ---------ELILLDEPFSALDEQLRRQIREDMIA 183 (359)
T ss_dssp ---------SEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred ---------CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 12445566666666666666655444
No 52
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.00 E-value=4.8e-10 Score=81.19 Aligned_cols=65 Identities=26% Similarity=0.414 Sum_probs=54.3
Q ss_pred CccHHHHHh---------hhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Q psy13773 111 LEGVKRELQ---------ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMET 181 (299)
Q Consensus 111 ~p~~~~R~~---------~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (299)
+|+..+|.+ .+..++++..||.+|+||||+||..+|++|++.|+++..
T Consensus 2 lPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~----------------------- 58 (78)
T 3kw6_A 2 PPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR----------------------- 58 (78)
T ss_dssp CCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred cCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-----------------------
Confidence 466777665 234689999999999999999999999999999988631
Q ss_pred CCCCCCcccccHHHHHHHHHhccC
Q psy13773 182 EDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 182 ~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
..|+.+||..|++++..
T Consensus 59 -------~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 59 -------VHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp -------SEECHHHHHHHHHHHHC
T ss_pred -------CCCCHHHHHHHHHHHHh
Confidence 46999999999998754
No 53
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.98 E-value=8.2e-10 Score=113.55 Aligned_cols=60 Identities=23% Similarity=0.449 Sum_probs=42.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhh----------cCCeecccchhhh--hccccccHHHHHHHHHHHHH
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL--TMWFGESEANVRDIFDKVTM 78 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l----------~~~~i~i~~~~l~--~~~~g~~~~~i~~~f~~a~~ 78 (299)
.....++|+||||||||++++++|..+ +..++.+++..+. ..+.++.+..++.+|..+..
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~ 260 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQ 260 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHT
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHh
Confidence 345679999999999999999999987 5667888888776 45667777888888877653
No 54
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.98 E-value=4.6e-11 Score=103.97 Aligned_cols=159 Identities=13% Similarity=0.157 Sum_probs=94.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|+||||||||||+|+|++.+.+ +.+.+++.++... .......+.. +...+.++......
T Consensus 23 vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~~~~~--~~i~~v~q~~~l~~~ 96 (224)
T 2pcj_A 23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYT----NEKELSLLRN--RKLGFVFQFHYLIPE 96 (224)
T ss_dssp EEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSS----CHHHHHHHHH--HHEEEECSSCCCCTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCC----CHHHHHHHHh--CcEEEEecCcccCCC
Confidence 5677899999999999999999999999998765 4566666655321 1111111110 11112222111111
Q ss_pred hhhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
....+.+.. ... .... ....+++..+++.+++..+ .+....||||+.|+++...++..-
T Consensus 97 ~tv~e~l~~-~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~------------- 158 (224)
T 2pcj_A 97 LTALENVIV-PML----KMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANE------------- 158 (224)
T ss_dssp SCHHHHHHH-HHH----HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTC-------------
T ss_pred CCHHHHHHh-HHH----HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcC-------------
Confidence 112222211 000 0111 2234567778888888554 455678999999998876544321
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
+ .-+..+|+....++.+.+.+.+.|++.+
T Consensus 159 -----p---~lllLDEPt~~LD~~~~~~~~~~l~~l~ 187 (224)
T 2pcj_A 159 -----P---ILLFADEPTGNLDSANTKRVMDIFLKIN 187 (224)
T ss_dssp -----C---SEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred -----C---CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 1 1345677778888888888888887763
No 55
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.96 E-value=2.2e-10 Score=101.24 Aligned_cols=159 Identities=14% Similarity=0.170 Sum_probs=95.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC-CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-h
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA-NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP-S 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~-~ 91 (299)
++|.+.+++.++|.||||||||||+|+|++.+.+ +.+.+++.++... ....++ +...+.++...... .
T Consensus 19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~----~~~~~~------~~i~~v~q~~~~~~~~ 88 (249)
T 2qi9_C 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAW----SATKLA------LHRAYLSQQQTPPFAT 88 (249)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGS----CHHHHH------HHEEEECSCCCCCTTC
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcC----CHHHHh------ceEEEECCCCccCCCC
Confidence 4677899999999999999999999999997654 5556666554321 111111 11122222211111 1
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA 170 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~ 170 (299)
...+.+.. ... ... . .+++..+++.+++..+ .+....||||+.|+++...++..-.+.
T Consensus 89 tv~e~l~~-~~~-----~~~-~-~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~------------- 147 (249)
T 2qi9_C 89 PVWHYLTL-HQH-----DKT-R-TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQ------------- 147 (249)
T ss_dssp BHHHHHHT-TCS-----STT-C-HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTT-------------
T ss_pred cHHHHHHH-hhc-----cCC-c-HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCc-------------
Confidence 22233221 100 011 1 5667777888888554 455678999999999887665542210
Q ss_pred CCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.......+..+|+....++.+.+.+.+.|++.+
T Consensus 148 -~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~ 180 (249)
T 2qi9_C 148 -ANPAGQLLLLDEPMNSLDVAQQSALDKILSALS 180 (249)
T ss_dssp -TCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHH
T ss_pred -CCCCCeEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 000001345778888888899999998888763
No 56
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.96 E-value=1.7e-10 Score=102.76 Aligned_cols=163 Identities=12% Similarity=0.122 Sum_probs=96.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhh-----c-cccccHHHHHHHHHHHHHHHHhhhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT-----M-WFGESEANVRDIFDKVTMENFRYAM 85 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~-----~-~~g~~~~~i~~~f~~a~~~~~~~~~ 85 (299)
++|.+.+++.++|+||||||||||+|+|++.+.+ +.+.+++.++.. . +..........+. +...+.++.
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~v~Q~ 101 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLR---TRLTMVFQH 101 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHH---HHEEEECSS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHh---cceEEEecC
Confidence 5778899999999999999999999999998765 556677765531 0 0000111111111 111222221
Q ss_pred cCCCch-hhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHH--HHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 86 GKSSPS-ALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYI--AKVTNGFSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 86 ~~~~~~-~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~L--A~~t~glSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
...... ...+.+..... ..... .+..+|+..+++.+++..+ .+....||||++|+++...++..-.
T Consensus 102 ~~l~~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p----- 172 (262)
T 1b0u_A 102 FNLWSHMTVLENVMEAPI----QVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEP----- 172 (262)
T ss_dssp CCCCTTSCHHHHHHHHHH----HTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCC-----
T ss_pred cccCCCCcHHHHHHhhHH----HhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCC-----
Confidence 111111 22222211000 00111 2234667788888888554 4566789999999998766554311
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.+.+.|++.+
T Consensus 173 ----------------~lllLDEPts~LD~~~~~~~~~~l~~l~ 200 (262)
T 1b0u_A 173 ----------------DVLLFDEPTSALDPELVGEVLRIMQQLA 200 (262)
T ss_dssp ----------------SEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred ----------------CEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 1245677778888888888888887763
No 57
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.95 E-value=5.5e-11 Score=110.27 Aligned_cols=152 Identities=14% Similarity=0.171 Sum_probs=91.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.+.|.||||||||||+|+|++...+ +.+.+++.++..... ..+.+..+|+ .....+
T Consensus 34 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~Q----------~~~l~~~ 101 (355)
T 1z47_A 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGLVFQ----------NYALFQH 101 (355)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEEECG----------GGCCCTT
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEEEec----------CcccCCC
Confidence 5778899999999999999999999999998765 556677766532110 0011111111 111111
Q ss_pred hhhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
....+.+.- . +. .... .+..+|+..+++.+++..++ ++...||||++|+++...++..-.
T Consensus 102 ltv~eni~~-~--l~--~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P------------ 164 (355)
T 1z47_A 102 MTVYDNVSF-G--LR--EKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRP------------ 164 (355)
T ss_dssp SCHHHHHHH-H--HH--HTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC------------
T ss_pred CCHHHHHHH-H--HH--HcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCC------------
Confidence 111111110 0 00 0111 23356778888888886654 556789999999988765543311
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
..+..+|+....++.+.+.+.+.|++.
T Consensus 165 ---------~lLLLDEP~s~LD~~~r~~l~~~l~~l 191 (355)
T 1z47_A 165 ---------QVLLFDEPFAAIDTQIRRELRTFVRQV 191 (355)
T ss_dssp ---------SEEEEESTTCCSSHHHHHHHHHHHHHH
T ss_pred ---------CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 124466677777777777777777665
No 58
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.95 E-value=7.4e-11 Score=105.86 Aligned_cols=159 Identities=6% Similarity=0.057 Sum_probs=95.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~ 89 (299)
++|.+.+++.++|+||||||||||+|+|++.+.+ +.+.+++.++.. .....+.+.. ...+.++.. ...
T Consensus 27 isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~-----~~~~~~~~~~---~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 27 INMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDY-----SRKGIMKLRE---SIGIVFQDPDNQLF 98 (275)
T ss_dssp EEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCC-----SHHHHHHHHH---SEEEECSSGGGTCC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCc-----ccccHHHHhC---cEEEEEcCcccccc
Confidence 5677899999999999999999999999998765 456677766521 1111111111 111111111 011
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
.....+.+..... ..-....+..+|+..+++.+++..++ +....||||++|+++...++..-.
T Consensus 99 ~~tv~e~l~~~~~---~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P------------- 162 (275)
T 3gfo_A 99 SASVYQDVSFGAV---NMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP------------- 162 (275)
T ss_dssp SSBHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCC-------------
T ss_pred cCcHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCC-------------
Confidence 1112222211000 00001123456777888888886655 455789999999998766554311
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.|.+.|++.+
T Consensus 163 --------~lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 163 --------KVLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp --------SEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred --------CEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 1245677788888888888888877653
No 59
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.95 E-value=9.6e-11 Score=104.43 Aligned_cols=158 Identities=13% Similarity=0.154 Sum_probs=95.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|+||||||||||+|+|++.+.+ +.+.+++.++. . .... ...+. +...+.++.......
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~-~-~~~~---~~~~~---~~i~~v~Q~~~l~~~ 114 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK-A-KDTN---LNKVR---EEVGMVFQRFNLFPH 114 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS-S-TTCC---HHHHH---HHEEEECSSCCCCTT
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC-C-cccc---HHHHh---CcEEEEeCCCcCCCC
Confidence 5778899999999999999999999999998765 55667776553 1 0011 11111 111222221111111
Q ss_pred -hhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 -ALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 92 -~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
...+.+..... ..... .+..+|+..+++.+++..+ .+....||||++|+++...++..-.
T Consensus 115 ~tv~e~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p------------ 178 (263)
T 2olj_A 115 MTVLNNITLAPM----KVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEP------------ 178 (263)
T ss_dssp SCHHHHHHHHHH----HTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC------------
T ss_pred CCHHHHHHHHHH----HHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCC------------
Confidence 22222211000 00111 2234567788888888554 4556789999999998766544311
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.+.+.|++.+
T Consensus 179 ---------~lllLDEPts~LD~~~~~~~~~~l~~l~ 206 (263)
T 2olj_A 179 ---------KIMLFDEPTSALDPEMVGEVLSVMKQLA 206 (263)
T ss_dssp ---------SEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred ---------CEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1355778888888899999998888763
No 60
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.95 E-value=2.5e-10 Score=100.79 Aligned_cols=150 Identities=11% Similarity=0.081 Sum_probs=89.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|+||||||||||+|+|++.+.+ +.+.+++.++... ....++ +...+.++.......
T Consensus 28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~----~~~~~~------~~i~~v~Q~~~l~~~ 97 (247)
T 2ff7_A 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA----DPNWLR------RQVGVVLQDNVLLNR 97 (247)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTS----CHHHHH------HHEEEECSSCCCTTS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhC----CHHHHH------hcEEEEeCCCccccc
Confidence 5677899999999999999999999999998765 4566776665321 111111 111222221111111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKV------------TNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~------------t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
...+.+.. .. . ....+++..+++.+++..+..+ ...||||++|+++...++..-.
T Consensus 98 tv~enl~~-~~-------~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p---- 164 (247)
T 2ff7_A 98 SIIDNISL-AN-------P-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP---- 164 (247)
T ss_dssp BHHHHHTT-TC-------T-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC----
T ss_pred cHHHHHhc-cC-------C-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC----
Confidence 22222211 10 0 0113345555566666555443 3589999999998766543211
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.-+..+|+....++.+.+.+.+.|++.
T Consensus 165 -----------------~lllLDEPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 165 -----------------KILIFDEATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp -----------------SEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred -----------------CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 135567778888888888888887665
No 61
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.94 E-value=6.8e-11 Score=109.87 Aligned_cols=152 Identities=14% Similarity=0.185 Sum_probs=92.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.+.|.||||||||||+|+|++...+ +.+.+++.++..... ..+.+ .+.++.....+.
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~i----------g~v~Q~~~l~~~ 89 (359)
T 2yyz_A 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP--KYREV----------GMVFQNYALYPH 89 (359)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGTTE----------EEECSSCCCCTT
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh--hhCcE----------EEEecCcccCCC
Confidence 5778899999999999999999999999998764 556777766543211 00111 111111111111
Q ss_pred -hhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 -ALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 92 -~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
...+.+. +... ....+ +..+|+..+++.+++..+. ++...||||++|+++...++..-.
T Consensus 90 ltv~eni~-~~~~----~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P------------ 152 (359)
T 2yyz_A 90 MTVFENIA-FPLR----ARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQP------------ 152 (359)
T ss_dssp SCHHHHHH-GGGS----SSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC------------
T ss_pred CCHHHHHH-HHHH----hcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC------------
Confidence 1122221 1100 01112 2245777888888886554 556789999999988765443311
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
..+..+|+....++.+.+.+.+.|++.
T Consensus 153 ---------~lLLLDEP~s~LD~~~r~~l~~~l~~l 179 (359)
T 2yyz_A 153 ---------KVLLFDEPLSNLDANLRMIMRAEIKHL 179 (359)
T ss_dssp ---------SEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred ---------CEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 124466677777777777777777665
No 62
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.93 E-value=7.2e-11 Score=109.82 Aligned_cols=152 Identities=13% Similarity=0.221 Sum_probs=90.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.+.|.||||||||||+|+|++...+ +.+.+++.++..... ..+.+ .+.++.....+.
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~i----------g~v~Q~~~l~~~ 89 (362)
T 2it1_A 22 INLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP--KDRNV----------GLVFQNWALYPH 89 (362)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGTTE----------EEECTTCCCCTT
T ss_pred eEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH--hHCcE----------EEEecCcccCCC
Confidence 5778899999999999999999999999998765 556677766543211 01111 111111111111
Q ss_pred -hhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 -ALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 92 -~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
...+.+.. . + ..... .+..+|+..+++.+++..+. ++...||||++|+++...++..-.+
T Consensus 90 ltv~eni~~-~--~--~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~----------- 153 (362)
T 2it1_A 90 MTVYKNIAF-P--L--ELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPE----------- 153 (362)
T ss_dssp SCHHHHHHH-H--H--HHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCS-----------
T ss_pred CCHHHHHHH-H--H--HhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCC-----------
Confidence 11121110 0 0 00111 23356777888888886554 5567899999999887665443111
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.+.+.|++.
T Consensus 154 ----------lLLLDEP~s~LD~~~r~~l~~~l~~l 179 (362)
T 2it1_A 154 ----------VLLLDEPLSNLDALLRLEVRAELKRL 179 (362)
T ss_dssp ----------EEEEESGGGGSCHHHHHHHHHHHHHH
T ss_pred ----------EEEEECccccCCHHHHHHHHHHHHHH
Confidence 23455666666677777777776665
No 63
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.93 E-value=8.8e-11 Score=108.94 Aligned_cols=155 Identities=12% Similarity=0.166 Sum_probs=94.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhcc---ccccHHHHHHHHHHHHHHHHhhhhcCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMW---FGESEANVRDIFDKVTMENFRYAMGKS 88 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~---~g~~~~~i~~~f~~a~~~~~~~~~~~~ 88 (299)
++|.+.+++.+.|+||||||||||+|+|++...+ +.+.+++.++.... .....+.+ .+.++....
T Consensus 24 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~i----------g~v~Q~~~l 93 (353)
T 1oxx_K 24 VNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI----------GMVFQTWAL 93 (353)
T ss_dssp EEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCE----------EEEETTSCC
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCE----------EEEeCCCcc
Confidence 5778899999999999999999999999998765 55667776653210 00000111 111111111
Q ss_pred Cch-hhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 89 SPS-ALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRR 164 (299)
Q Consensus 89 ~~~-~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~ 164 (299)
.+. ...+.+. +... ....+ +..+|+..+++.+++..++ ++...||||++|+++...++..-.
T Consensus 94 ~~~ltv~eni~-~~~~----~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P--------- 159 (353)
T 1oxx_K 94 YPNLTAFENIA-FPLT----NMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDP--------- 159 (353)
T ss_dssp CTTSCHHHHHH-GGGT----TSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC---------
T ss_pred CCCCCHHHHHH-HHHH----HcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCC---------
Confidence 111 1122221 1100 01112 3356777888889986654 556789999999988765443211
Q ss_pred HHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 165 EREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.+.+.|++.+
T Consensus 160 ------------~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 187 (353)
T 1oxx_K 160 ------------SLLLLDEPFSNLDARMRDSARALVKEVQ 187 (353)
T ss_dssp ------------SEEEEESTTTTSCGGGHHHHHHHHHHHH
T ss_pred ------------CEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 1244667777888888888888877763
No 64
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.92 E-value=9.9e-11 Score=103.94 Aligned_cols=160 Identities=11% Similarity=0.086 Sum_probs=92.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|+||||||||||+|+|++.+.+ +.+.+++.++... ... ..+. ....+.++......
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~----~~~---~~~~--~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK----EPA---ELYH--YGIVRTFQTPQPLKE 96 (257)
T ss_dssp ECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC----CHH---HHHH--HTEEECCCCCGGGGG
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CHH---HHHh--CCEEEEccCCccCCC
Confidence 5678899999999999999999999999998765 5566776655321 100 0000 00011111110000
Q ss_pred hhhhHHHhhcCccchhhc----------CCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDI----------GGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~----------~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
....+.+........... .......+++..+++.+++..++ +....||||++|+++...++..-.
T Consensus 97 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p---- 172 (257)
T 1g6h_A 97 MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNP---- 172 (257)
T ss_dssp SBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC----
T ss_pred CcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCC----
Confidence 111122211000000000 01123346677888888886554 556789999999998766544311
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.-+..+|+....++.+.+.+.+.|++.
T Consensus 173 -----------------~lllLDEPts~LD~~~~~~l~~~l~~l 199 (257)
T 1g6h_A 173 -----------------KMIVMDEPIAGVAPGLAHDIFNHVLEL 199 (257)
T ss_dssp -----------------SEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred -----------------CEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 124467777788888888888877655
No 65
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.92 E-value=8.9e-11 Score=109.63 Aligned_cols=154 Identities=12% Similarity=0.222 Sum_probs=90.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhhcc----ccccHHHHHHHHHHHHHHHHhhhhcC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMW----FGESEANVRDIFDKVTMENFRYAMGK 87 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~----~g~~~~~i~~~f~~a~~~~~~~~~~~ 87 (299)
++|.+.+++.+.|+||||||||||+|+|++...+ +.+.+++.++.... .....+.+ .+.++...
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~i----------g~v~Q~~~ 91 (372)
T 1g29_1 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI----------AMVFQSYA 91 (372)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSE----------EEECSCCC
T ss_pred eEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCE----------EEEeCCCc
Confidence 5778899999999999999999999999998764 55677776653310 00000111 11111111
Q ss_pred CCch-hhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 88 SSPS-ALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIR 163 (299)
Q Consensus 88 ~~~~-~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~ 163 (299)
.-+. ...+.+.- . + ..... .+..+|+..+++.+++..+. ++...||||++|+++...++..-.+
T Consensus 92 l~~~ltv~eni~~-~--~--~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~------- 159 (372)
T 1g29_1 92 LYPHMTVYDNIAF-P--L--KLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQ------- 159 (372)
T ss_dssp CCTTSCHHHHHHH-H--H--HHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCS-------
T ss_pred cCCCCCHHHHHHH-H--H--HHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCC-------
Confidence 1111 11111110 0 0 00111 23356777888888886554 5567899999999987665543111
Q ss_pred HHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 164 REREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.+.+.|++.
T Consensus 160 --------------lLLLDEP~s~LD~~~r~~l~~~l~~l 185 (372)
T 1g29_1 160 --------------VFLMDEPLSNLDAKLRVRMRAELKKL 185 (372)
T ss_dssp --------------EEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred --------------EEEECCCCccCCHHHHHHHHHHHHHH
Confidence 24456666677777777777776665
No 66
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.92 E-value=7.4e-11 Score=110.10 Aligned_cols=153 Identities=13% Similarity=0.221 Sum_probs=91.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.+.|.||||||||||+|+|++...+ +.+.+++.++..... ..+.+..+|+... +. ...
T Consensus 30 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~Q~~~---l~------~~l 98 (372)
T 1v43_A 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP--KDRNISMVFQSYA---VW------PHM 98 (372)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGGTEEEEEC---------------CC
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh--hhCcEEEEecCcc---cC------CCC
Confidence 5778899999999999999999999999998764 556777766543211 0111111121100 00 000
Q ss_pred hhhHHHhhcCccchhhcCCC--ccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~--p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
...+.+. +... .... .+..+|+..+++.+++..++ ++...||||++|+++...++..-.+
T Consensus 99 tv~eni~-~~~~----~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~------------ 161 (372)
T 1v43_A 99 TVYENIA-FPLK----IKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD------------ 161 (372)
T ss_dssp CHHHHHH-TTCC------CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS------------
T ss_pred CHHHHHH-HHHH----hcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC------------
Confidence 1112211 1100 0111 22356778888889986654 5668899999999887665443111
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.+.+.|++.
T Consensus 162 ---------lLLLDEP~s~LD~~~r~~l~~~l~~l 187 (372)
T 1v43_A 162 ---------VLLMDEPLSNLDAKLRVAMRAEIKKL 187 (372)
T ss_dssp ---------EEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred ---------EEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 24456666777777777777777665
No 67
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.91 E-value=3.9e-11 Score=107.94 Aligned_cols=56 Identities=20% Similarity=0.088 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
|.++|+||+|.+.+++.+.+.+.+ |++||++|...-....++|+|||||||||+|.
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~--~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVIL--PSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHH--HHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHh--hhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 669999999999999999999999 99999999855445679999999999999875
No 68
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.90 E-value=7e-11 Score=109.70 Aligned_cols=57 Identities=19% Similarity=0.098 Sum_probs=52.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.|.++|+||.|++.+++.+.+.+.| |+++|++|....+...++|||||||||||+|.
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~--~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVW--PMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHH--HHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHH--HhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 3679999999999999999999999 99999999877677789999999999999874
No 69
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.90 E-value=4.5e-10 Score=102.18 Aligned_cols=151 Identities=13% Similarity=0.212 Sum_probs=88.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|+||||||||||+++|++.+.+ +.|.+++.++... ....++. ...+.++....-..
T Consensus 73 isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~----~~~~~r~------~i~~v~Q~~~lf~~ 142 (306)
T 3nh6_A 73 VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQV----TQASLRS------HIGVVPQDTVLFND 142 (306)
T ss_dssp EEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSB----CHHHHHH------TEEEECSSCCCCSE
T ss_pred eeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccC----CHHHHhc------ceEEEecCCccCcc
Confidence 5677899999999999999999999999998765 5677788776543 1111111 01122221111111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAKV-----------TNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~~-----------t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
..++.+.- .......+++...++.+++.. +... ...||||+.|+++.+.++..-.
T Consensus 143 Tv~eNi~~---------~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p---- 209 (306)
T 3nh6_A 143 TIADNIRY---------GRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAP---- 209 (306)
T ss_dssp EHHHHHHT---------TSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC----
T ss_pred cHHHHHHh---------hcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCC----
Confidence 22222211 000111223333344444432 2222 2479999999998876554311
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.-+..+|+....++.+...+.++|.+..
T Consensus 210 -----------------~iLlLDEPts~LD~~~~~~i~~~l~~l~ 237 (306)
T 3nh6_A 210 -----------------GIILLDEATSALDTSNERAIQASLAKVC 237 (306)
T ss_dssp -----------------SEEEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred -----------------CEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 1244677778888888888888887764
No 70
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.89 E-value=1.9e-10 Score=101.20 Aligned_cols=151 Identities=15% Similarity=0.223 Sum_probs=92.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+ +.++|+||||||||||+|+|++.+.+ +.+.+++.++.... ...+.+ .+.++.......
T Consensus 18 isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i----------~~v~q~~~l~~~ 84 (240)
T 2onk_A 18 VDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGI----------GFVPQDYALFPH 84 (240)
T ss_dssp EEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCC----------BCCCSSCCCCTT
T ss_pred eEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcE----------EEEcCCCccCCC
Confidence 5677889 99999999999999999999998765 45666765553210 000000 111111111111
Q ss_pred -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
...+.+. +.... ...+...+|+..+++.+++..+ .+....||||++|+++...++..-.
T Consensus 85 ltv~enl~-~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p-------------- 145 (240)
T 2onk_A 85 LSVYRNIA-YGLRN----VERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQP-------------- 145 (240)
T ss_dssp SCHHHHHH-TTCTT----SCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCC--------------
T ss_pred CcHHHHHH-HHHHH----cCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC--------------
Confidence 1222221 11100 0112225667788888888554 4556789999999988766543311
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
..+..+|+....++.+.+.+.+.|++.
T Consensus 146 -------~lllLDEPts~LD~~~~~~~~~~l~~l 172 (240)
T 2onk_A 146 -------RLLLLDEPLSAVDLKTKGVLMEELRFV 172 (240)
T ss_dssp -------SSBEEESTTSSCCHHHHHHHHHHHHHH
T ss_pred -------CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 135567788888888999998888776
No 71
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.87 E-value=2.6e-10 Score=100.21 Aligned_cols=157 Identities=16% Similarity=0.165 Sum_probs=93.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|.||||||||||+|+|++.+.+ +.+.+++.++... ... .... ....+.++.......
T Consensus 25 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~---~~~~--~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK----PAH---VINR--MGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC----CHH---HHHH--TTEEEECSSCCCCTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC----CHH---HHHh--CCEEEEecCCccCCC
Confidence 4677899999999999999999999999998765 4566676655321 111 1100 001122221111111
Q ss_pred -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCC-HHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVD-LNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~-l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
...+.+.. .. .. ........+++..+++.++ +..+ .+....||||++|+++...++..-.
T Consensus 96 ltv~enl~~-~~--~~-~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p------------- 158 (240)
T 1ji0_A 96 LTVYENLMM-GA--YN-RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRP------------- 158 (240)
T ss_dssp SBHHHHHHG-GG--TT-CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCC-------------
T ss_pred CcHHHHHHH-hh--hc-CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCC-------------
Confidence 22222221 10 00 0111233456667777774 7554 4556789999999998766543211
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.+.+.|++.+
T Consensus 159 --------~lllLDEPts~LD~~~~~~l~~~l~~~~ 186 (240)
T 1ji0_A 159 --------KLLMMDEPSLGLAPILVSEVFEVIQKIN 186 (240)
T ss_dssp --------SEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred --------CEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 1355677778888888888888887763
No 72
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.86 E-value=1.9e-10 Score=103.02 Aligned_cols=155 Identities=13% Similarity=0.145 Sum_probs=87.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|+||||||||||+|+|++.+.+ +.+.+++.++... ....++ +...+.++.......
T Consensus 38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~----~~~~~~------~~i~~v~Q~~~l~~~ 107 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY----DHHYLH------TQVAAVGQEPLLFGR 107 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGB----CHHHHH------HHEEEECSSCCCCSS
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccC----CHHHHh------ccEEEEecCCccccc
Confidence 5678899999999999999999999999998764 5566777665321 111111 111222222111112
Q ss_pred hhhHHHhhcCccchhhcCCCccH-H-----HHHhhhcccC--CHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGV-K-----RELQELVQDV--DLNY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEI 162 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~-~-----~R~~~l~~~v--~l~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~ 162 (299)
...+.+...... ...... . .++..+++.+ ++.. +.+....||||++|+++...++..-.
T Consensus 108 tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p------- 175 (271)
T 2ixe_A 108 SFRENIAYGLTR-----TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKP------- 175 (271)
T ss_dssp BHHHHHHTTCSS-----CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCC-------
T ss_pred cHHHHHhhhccc-----CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCC-------
Confidence 222333211000 000010 0 0111223333 2322 23556789999999998765543211
Q ss_pred HHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+...+.+.|++..
T Consensus 176 --------------~lllLDEPts~LD~~~~~~i~~~l~~~~ 203 (271)
T 2ixe_A 176 --------------RLLILDNATSALDAGNQLRVQRLLYESP 203 (271)
T ss_dssp --------------SEEEEESTTTTCCHHHHHHHHHHHHHCT
T ss_pred --------------CEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 1245677778888888888988888874
No 73
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.86 E-value=1.5e-10 Score=107.11 Aligned_cols=151 Identities=15% Similarity=0.233 Sum_probs=92.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.+.|.||||||||||+|+|++...+ +.+.+++.++... .. .+ +...+.++....-+.
T Consensus 19 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~----~~--~~------r~ig~v~Q~~~l~~~ 86 (348)
T 3d31_A 19 LSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL----SP--EK------HDIAFVYQNYSLFPH 86 (348)
T ss_dssp EEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS----CH--HH------HTCEEECTTCCCCTT
T ss_pred eEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC----ch--hh------CcEEEEecCcccCCC
Confidence 5678899999999999999999999999998765 5566777665321 00 00 000111111111111
Q ss_pred -hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 92 -ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 92 -~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
...+.+.- . +. ....+.. +|+..+++.+++..+. ++...||||++|+++...++..-
T Consensus 87 ltv~enl~~-~--~~--~~~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~--------------- 145 (348)
T 3d31_A 87 MNVKKNLEF-G--MR--MKKIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTN--------------- 145 (348)
T ss_dssp SCHHHHHHH-H--HH--HHCCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSC---------------
T ss_pred CCHHHHHHH-H--HH--HcCCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC---------------
Confidence 11122111 0 00 0111222 7778888888886554 55678999999998876544321
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
+ ..+..+|+....++.+.+.+.+.|++.
T Consensus 146 ---P---~lLLLDEP~s~LD~~~~~~l~~~l~~l 173 (348)
T 3d31_A 146 ---P---KILLLDEPLSALDPRTQENAREMLSVL 173 (348)
T ss_dssp ---C---SEEEEESSSTTSCHHHHHHHHHHHHHH
T ss_pred ---C---CEEEEECccccCCHHHHHHHHHHHHHH
Confidence 1 124466777777888888888877766
No 74
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.86 E-value=1.5e-10 Score=104.04 Aligned_cols=160 Identities=13% Similarity=0.128 Sum_probs=89.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcC--CC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK--SS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~--~~ 89 (299)
++|.+.+++.++|+||||||||||+|+|++.+.+ +.+.+++.++... ......++. ...+.++... ..
T Consensus 40 isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~--~~~~~~~~~------~i~~v~Q~~~~~~~ 111 (279)
T 2ihy_A 40 ISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKV--GYSAETVRQ------HIGFVSHSLLEKFQ 111 (279)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC-----CCHHHHHT------TEEEECHHHHTTSC
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccc--cCCHHHHcC------cEEEEEcCcccccC
Confidence 5677899999999999999999999999998765 4566666554300 001111110 0011111100 01
Q ss_pred c-hhhhHHHhhcCccchhhcCC--CccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 P-SALRETIVEVPNITWEDIGG--LEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRE 165 (299)
Q Consensus 90 ~-~~~~~~l~~l~~~l~~~~~r--~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~ 165 (299)
. ....+.+.. .......+.. .....+++..+++.+++..+ .+....||||++|+++...++..-.
T Consensus 112 ~~ltv~enl~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p---------- 180 (279)
T 2ihy_A 112 EGERVIDVVIS-GAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQP---------- 180 (279)
T ss_dssp TTSBHHHHHHT-TC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC----------
T ss_pred CCCCHHHHHHh-hhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCC----------
Confidence 0 122222211 1000000001 12234567778888888654 4556789999999998766554311
Q ss_pred HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
..+..+|+....++.+.+.+.+.|++.
T Consensus 181 -----------~lLlLDEPts~LD~~~~~~l~~~l~~l 207 (279)
T 2ihy_A 181 -----------QVLILDEPAAGLDFIARESLLSILDSL 207 (279)
T ss_dssp -----------SEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred -----------CEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 124566777777777877777776554
No 75
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.84 E-value=4.6e-10 Score=105.37 Aligned_cols=120 Identities=16% Similarity=0.197 Sum_probs=72.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA 92 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~ 92 (299)
++|.+.+++.+.|.||||||||||+|+|++... .+.+.+++.++.... ...++ +...+.++....-...
T Consensus 40 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~----~~~~r------r~ig~v~Q~~~lf~~t 109 (390)
T 3gd7_A 40 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSIT----LEQWR------KAFGVIPQKVFIFSGT 109 (390)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSC----HHHHH------HTEEEESCCCCCCSEE
T ss_pred eeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCC----hHHHh------CCEEEEcCCcccCccC
Confidence 567789999999999999999999999999664 355777777664321 11111 0001111111111111
Q ss_pred hhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHH-hcCC-----------CCHHHHHHHHHHHHHHH
Q psy13773 93 LRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAK-VTNG-----------FSGADLTEICQRACKLA 153 (299)
Q Consensus 93 ~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~-~t~g-----------lSggDl~~Lv~~A~~~a 153 (299)
..+.+.. . .....+++..+++.+++..+.. ...+ ||||+.|+++...++..
T Consensus 110 v~enl~~---------~-~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 110 FRKNLDP---------N-AAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp HHHHHCT---------T-CCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHhhh---------c-cccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 2222210 0 1122456667778888866554 4455 99999999988765543
No 76
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.84 E-value=8.1e-10 Score=80.83 Aligned_cols=64 Identities=23% Similarity=0.252 Sum_probs=48.0
Q ss_pred hcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHH
Q psy13773 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAM 200 (299)
Q Consensus 121 l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL 200 (299)
+..++|+..||.+|+||||+||.++|++|++.|+++.. ..|+.+||..|+
T Consensus 16 ~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~------------------------------~~i~~~df~~Al 65 (82)
T 2dzn_B 16 LAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR------------------------------YVILQSDLEEAY 65 (82)
T ss_dssp ECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC------------------------------SEECHHHHHHHH
T ss_pred CCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc------------------------------CCcCHHHHHHHH
Confidence 44688999999999999999999999999999988631 369999999999
Q ss_pred Hhc-cCCCCHHHHHH
Q psy13773 201 RFA-RRSVNDADIRK 214 (299)
Q Consensus 201 ~~~-~PsVsw~DIgg 214 (299)
+++ +|+++.+++.-
T Consensus 66 ~~v~~~~~~~~~~~~ 80 (82)
T 2dzn_B 66 ATQVKTDNTVDKFDF 80 (82)
T ss_dssp HTTCC----------
T ss_pred HHHHcCcCChHHHHh
Confidence 998 57777666543
No 77
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.84 E-value=3.6e-10 Score=100.34 Aligned_cols=154 Identities=12% Similarity=0.136 Sum_probs=92.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|.||||||||||+|+|++.+.+ +.+.+++.++... ...++ +...+.++.......
T Consensus 34 vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~-----~~~~~------~~i~~v~q~~~l~~~ 102 (256)
T 1vpl_A 34 ISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-----PHEVR------KLISYLPEEAGAYRN 102 (256)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-----HHHHH------TTEEEECTTCCCCTT
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcc-----HHHHh------hcEEEEcCCCCCCCC
Confidence 4678899999999999999999999999998765 4566666554321 01110 011122222111111
Q ss_pred -hhhHHHhhcCccchhhcCCCc--cHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 -ALRETIVEVPNITWEDIGGLE--GVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRRERE 167 (299)
Q Consensus 92 -~~~~~l~~l~~~l~~~~~r~p--~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~ 167 (299)
...+.+... .. ....+ +..+++..+++.+++..+ .+....||||++|+++...++..-
T Consensus 103 ltv~enl~~~-~~----~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~------------- 164 (256)
T 1vpl_A 103 MQGIEYLRFV-AG----FYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVN------------- 164 (256)
T ss_dssp SBHHHHHHHH-HH----HHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTC-------------
T ss_pred CcHHHHHHHH-HH----HcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcC-------------
Confidence 222222110 00 01111 224566677788888554 455678999999998876544321
Q ss_pred HhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 168 KLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
+ ..+..+|+....++.+.+.+.+.|++.+
T Consensus 165 -----p---~lllLDEPts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 165 -----P---RLAILDEPTSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp -----C---SEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred -----C---CEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 1 1345677777888888888888877653
No 78
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.82 E-value=1.9e-10 Score=101.16 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
|.++|+||+|++++|+.+.+.+.| +++|+.|.. |.....++|||||||||||+|.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~---~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY---LKSPERFLQLGAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH---HHCCC------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH---HHCHHHHHHcCCCCCceEEEECCCCCCHHHHH
Confidence 569999999999999999999988 899998854 5566789999999999999874
No 79
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.82 E-value=6.6e-10 Score=97.76 Aligned_cols=152 Identities=13% Similarity=0.168 Sum_probs=85.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+++.++|+||||||||||+++|++...+ +.+.+++.++.........+.+ .+.++....-..
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i----------~~v~q~~~l~~~ 90 (243)
T 1mv5_A 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI----------GFVSQDSAIMAG 90 (243)
T ss_dssp EEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC----------CEECCSSCCCCE
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhE----------EEEcCCCccccc
Confidence 5678899999999999999999999999998754 5677777665321110000001 111111111111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH------------HHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI------------AKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L------------A~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
...+.+.- . . ......+++..+++.+++..+ ......||||+.|+++...++..-.
T Consensus 91 tv~enl~~-~--~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p---- 158 (243)
T 1mv5_A 91 TIRENLTY-G--L-----EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP---- 158 (243)
T ss_dssp EHHHHTTS-C--T-----TSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC----
T ss_pred cHHHHHhh-h--c-----cCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC----
Confidence 12222210 0 0 000112233333333333222 1234689999999998776554311
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.-+..+|+....++.+.+.+.+.|++.+
T Consensus 159 -----------------~lllLDEPts~LD~~~~~~i~~~l~~~~ 186 (243)
T 1mv5_A 159 -----------------KILMLDEATASLDSESESMVQKALDSLM 186 (243)
T ss_dssp -----------------SEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred -----------------CEEEEECCcccCCHHHHHHHHHHHHHhc
Confidence 1245677778888888888888887764
No 80
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.82 E-value=1.3e-09 Score=96.95 Aligned_cols=150 Identities=14% Similarity=0.165 Sum_probs=85.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA 92 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~ 92 (299)
++|.+.+++.++|+||||||||||+|+|++.+. .+.+.+++.++... ....++ +...+.++....-...
T Consensus 39 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~----~~~~~~------~~i~~v~Q~~~l~~~t 108 (260)
T 2ghi_A 39 INFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKY----NRNSIR------SIIGIVPQDTILFNET 108 (260)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGB----CHHHHH------TTEEEECSSCCCCSEE
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhc----CHHHHh------ccEEEEcCCCcccccC
Confidence 567889999999999999999999999999764 35566776655321 111111 0001122111111112
Q ss_pred hhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH------------HhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 93 LRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA------------KVTNGFSGADLTEICQRACKLAIRQSIET 160 (299)
Q Consensus 93 ~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA------------~~t~glSggDl~~Lv~~A~~~a~~r~~~~ 160 (299)
..+.+. +.. .. .. .+++..+++.+++.... ++...||||++|+++...++..-.+
T Consensus 109 v~enl~-~~~------~~-~~-~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~---- 175 (260)
T 2ghi_A 109 IKYNIL-YGK------LD-AT-DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK---- 175 (260)
T ss_dssp HHHHHH-TTC------TT-CC-HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS----
T ss_pred HHHHHh-ccC------CC-CC-HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC----
Confidence 222221 110 00 11 23333444444543332 2346799999999988765543111
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 161 EIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.+..+|+....++.+.+.|.+.|++.
T Consensus 176 -----------------lllLDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 176 -----------------IVIFDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp -----------------EEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred -----------------EEEEECccccCCHHHHHHHHHHHHHh
Confidence 24466777777888888888777665
No 81
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.82 E-value=4e-10 Score=97.41 Aligned_cols=149 Identities=17% Similarity=0.161 Sum_probs=88.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCc-
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSP- 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~- 90 (299)
++|.+.+++.++|+||||||||||+|+|++.+.+ +.+.+++.++. . .+ ....+.++......
T Consensus 28 vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-~--------~~------~~i~~v~q~~~~~~~ 92 (214)
T 1sgw_A 28 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-K--------VK------GKIFFLPEEIIVPRK 92 (214)
T ss_dssp EEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-G--------GG------GGEEEECSSCCCCTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-h--------hc------CcEEEEeCCCcCCCC
Confidence 4677899999999999999999999999998765 45566655432 0 00 00011111111111
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA 170 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~ 170 (299)
....+.+... .... ....+ .+++..+++.+++..+.+....||+|++|+++...++..-
T Consensus 93 ~tv~enl~~~-~~~~---~~~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~---------------- 151 (214)
T 1sgw_A 93 ISVEDYLKAV-ASLY---GVKVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVN---------------- 151 (214)
T ss_dssp SBHHHHHHHH-HHHT---TCCCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSC----------------
T ss_pred CCHHHHHHHH-HHhc---CCchH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhC----------------
Confidence 1122222110 0000 00112 5566677777777444444578999999999876544321
Q ss_pred CCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
+ ..+..+|+....++.+.+.+.+.|++.
T Consensus 152 --p---~lllLDEPts~LD~~~~~~l~~~l~~~ 179 (214)
T 1sgw_A 152 --A---EIYVLDDPVVAIDEDSKHKVLKSILEI 179 (214)
T ss_dssp --C---SEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred --C---CEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 1 135567788888888888888887655
No 82
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.81 E-value=6.5e-10 Score=99.14 Aligned_cols=152 Identities=9% Similarity=0.041 Sum_probs=91.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc--CCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG--KSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~--~~~ 89 (299)
++|.+.+++.++|+||||||||||+|+|++.+.+ +.+.+++.++.. . .+ . +...+.++.. ...
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~-------~---~~-~--~~i~~v~q~~~~~~~ 92 (266)
T 2yz2_A 26 VSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG-------Y---EI-R--RNIGIAFQYPEDQFF 92 (266)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH-------H---HH-G--GGEEEECSSGGGGCC
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch-------H---Hh-h--hhEEEEeccchhhcC
Confidence 5678899999999999999999999999998765 456666554321 0 00 0 0001111110 011
Q ss_pred chhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH--HHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN--YIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRRER 166 (299)
Q Consensus 90 ~~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~--~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~ 166 (299)
.....+.+....... .......+|+..+++.+++. .+. +....||||++|+++...++..-.
T Consensus 93 ~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p----------- 157 (266)
T 2yz2_A 93 AERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEP----------- 157 (266)
T ss_dssp CSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCC-----------
T ss_pred CCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCC-----------
Confidence 112222222111000 01123356777788888886 554 555789999999988766543311
Q ss_pred HHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 167 EKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.-+..+|+....++.+.+.+.+.|++.
T Consensus 158 ----------~lllLDEPts~LD~~~~~~l~~~l~~l 184 (266)
T 2yz2_A 158 ----------DILILDEPLVGLDREGKTDLLRIVEKW 184 (266)
T ss_dssp ----------SEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred ----------CEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 124466777788888888888877665
No 83
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.81 E-value=7.8e-10 Score=98.71 Aligned_cols=161 Identities=16% Similarity=0.176 Sum_probs=92.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh----cCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l----~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~ 89 (299)
++|.+.+++.++|+||||||||||+|+|++.. ..+.+.+++.++... ..... .. ....+.++.....
T Consensus 39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~----~~~~~---~~--~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL----SPEDR---AG--EGIFMAFQYPVEI 109 (267)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGS----CHHHH---HH--HTEEEECSSCCCC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcC----CHHHH---hh--CCEEEEccCcccc
Confidence 46778999999999999999999999999973 246677777665422 11110 00 0001111111111
Q ss_pred ch-hhhHHHhhcCccch--hhcCCC--ccHHHHHhhhcccCCHH-HHHHhc-C-CCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 PS-ALRETIVEVPNITW--EDIGGL--EGVKRELQELVQDVDLN-YIAKVT-N-GFSGADLTEICQRACKLAIRQSIETE 161 (299)
Q Consensus 90 ~~-~~~~~l~~l~~~l~--~~~~r~--p~~~~R~~~l~~~v~l~-~LA~~t-~-glSggDl~~Lv~~A~~~a~~r~~~~~ 161 (299)
.. ...+.+......+. ...... .+..+++..+++.+++. .+..+. . .||||++|+++...++..-.
T Consensus 110 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p------ 183 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEP------ 183 (267)
T ss_dssp TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCC------
T ss_pred ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCC------
Confidence 11 11121111000000 000011 12245677778888884 454444 4 49999999998776554311
Q ss_pred HHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 162 IRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.+.+.|++.+
T Consensus 184 ---------------~lLlLDEPts~LD~~~~~~l~~~l~~l~ 211 (267)
T 2zu0_C 184 ---------------ELCILDESDSGLDIDALKVVADGVNSLR 211 (267)
T ss_dssp ---------------SEEEEESTTTTCCHHHHHHHHHHHHTTC
T ss_pred ---------------CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 1355777888888888999999888764
No 84
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.80 E-value=4.2e-10 Score=99.49 Aligned_cols=161 Identities=13% Similarity=0.119 Sum_probs=86.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHh--hc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANE--CQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS 89 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~--l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~ 89 (299)
++|.+.+++.++|.||||||||||+|+|++. .. .+.+.+++.++... ..... .. ....+.++.....
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~----~~~~~---~~--~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILEL----SPDER---AR--KGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTS----CHHHH---HH--TTBCCCCCCCC-C
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCC----CHHHH---Hh--CcEEEeccCCccc
Confidence 5678899999999999999999999999996 33 46677777665321 11110 00 0001111111111
Q ss_pred c-hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HHHHHh-cCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 90 P-SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NYIAKV-TNG-FSGADLTEICQRACKLAIRQSIETEIRRE 165 (299)
Q Consensus 90 ~-~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~LA~~-t~g-lSggDl~~Lv~~A~~~a~~r~~~~~~~~~ 165 (299)
. ....+.+...............+..+++..+++.+++ ..+..+ ... ||||++|+++...++..-.
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p---------- 162 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP---------- 162 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCC----------
T ss_pred cCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC----------
Confidence 1 1112222110000000000011234566677777787 455444 455 9999999998776554311
Q ss_pred HHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 166 REKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.+.+.|++.+
T Consensus 163 -----------~lllLDEPts~LD~~~~~~l~~~l~~l~ 190 (250)
T 2d2e_A 163 -----------TYAVLDETDSGLDIDALKVVARGVNAMR 190 (250)
T ss_dssp -----------SEEEEECGGGTTCHHHHHHHHHHHHHHC
T ss_pred -----------CEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 1244667777777788888888777663
No 85
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.78 E-value=9e-11 Score=104.80 Aligned_cols=57 Identities=21% Similarity=0.203 Sum_probs=51.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.|+++|+||+|++++++.+.+.+.+ |+++|++|.. +.....++|||||||||||+|.
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVEL--PLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHH--HHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHH--HhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 4789999999999999999999999 9999998765 3466789999999999999875
No 86
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.78 E-value=6.5e-10 Score=98.49 Aligned_cols=148 Identities=11% Similarity=0.046 Sum_probs=87.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCC-chh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSS-PSA 92 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~-~~~ 92 (299)
++|.+.+++.++|+||||||||||+|+|++.+.+....|.... .+ .+.++..... ...
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~----~i-----------------~~v~q~~~~~~~~t 82 (253)
T 2nq2_C 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ----SI-----------------GFVPQFFSSPFAYS 82 (253)
T ss_dssp EEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECS----CE-----------------EEECSCCCCSSCCB
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec----cE-----------------EEEcCCCccCCCCC
Confidence 4677899999999999999999999999998876554442000 00 0001100000 011
Q ss_pred hhHHHhhcCccchhhcC-C-CccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 93 LRETIVEVPNITWEDIG-G-LEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 93 ~~~~l~~l~~~l~~~~~-r-~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
..+.+... ........ . .....+++..+++.+++..+. +....||||+.|+++...++..-.
T Consensus 83 v~enl~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p-------------- 147 (253)
T 2nq2_C 83 VLDIVLMG-RSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASEC-------------- 147 (253)
T ss_dssp HHHHHHGG-GGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTC--------------
T ss_pred HHHHHHHh-hhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCC--------------
Confidence 11111110 00000000 0 122345677778888886544 556789999999998776554311
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++.+.+.+.+.|++.+
T Consensus 148 -------~lllLDEPts~LD~~~~~~l~~~l~~l~ 175 (253)
T 2nq2_C 148 -------KLILLDEPTSALDLANQDIVLSLLIDLA 175 (253)
T ss_dssp -------SEEEESSSSTTSCHHHHHHHHHHHHHHH
T ss_pred -------CEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1355677778888888888888887763
No 87
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.76 E-value=5.7e-09 Score=102.90 Aligned_cols=152 Identities=11% Similarity=0.149 Sum_probs=90.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
+++.+++|+.++|+||||||||||+++|++... .+.+.+++.++... ....++. ...+.++....-..
T Consensus 362 i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~----~~~~~~~------~i~~v~Q~~~l~~~ 431 (582)
T 3b5x_A 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDY----KLTNLRR------HFALVSQNVHLFND 431 (582)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhC----CHHHHhc------CeEEEcCCCccccc
Confidence 567789999999999999999999999999775 46677887766432 1111111 00111111111111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHH------------hcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAK------------VTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~------------~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.- .. .....++++..+++.+++++... ....+|||++|+++...++..-.+
T Consensus 432 tv~eni~~-~~-------~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~--- 500 (582)
T 3b5x_A 432 TIANNIAY-AA-------EGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAP--- 500 (582)
T ss_pred cHHHHHhc-cC-------CCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCC---
Confidence 22222211 00 00112344555556666644332 235799999999987665543111
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++.+.+.+.+++++.+
T Consensus 501 ------------------illlDEpts~LD~~~~~~i~~~l~~~~ 527 (582)
T 3b5x_A 501 ------------------VLILDEATSALDTESERAIQAALDELQ 527 (582)
T ss_pred ------------------EEEEECccccCCHHHHHHHHHHHHHHc
Confidence 244677888888889999999988874
No 88
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.75 E-value=1.1e-09 Score=97.53 Aligned_cols=147 Identities=14% Similarity=0.131 Sum_probs=89.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC--eecccchhhhhccccccHHHHHHHHHHHHHHH-HhhhhcCCCc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANVRDIFDKVTMEN-FRYAMGKSSP 90 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~--~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~-~~~~~~~~~~ 90 (299)
++|.+. ++.++|.||||||||||+|+|++.+ +. .+.+++.++... . ..+.+ . +.++.... .
T Consensus 24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~-~~~~i----------~~~v~Q~~~l-~ 87 (263)
T 2pjz_A 24 INLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--R-NYIRY----------STNLPEAYEI-G 87 (263)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--S-CCTTE----------EECCGGGSCT-T
T ss_pred eeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--H-Hhhhe----------EEEeCCCCcc-C
Confidence 467889 9999999999999999999999987 64 455666554321 0 00001 1 11221111 1
Q ss_pred hhhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13773 91 SALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREK 168 (299)
Q Consensus 91 ~~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~ 168 (299)
....+.+.... . +. ....+++..+++.+++. .+ .+....||||++|+++...++..-.
T Consensus 88 ~tv~enl~~~~----~-~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p------------- 147 (263)
T 2pjz_A 88 VTVNDIVYLYE----E-LK--GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQP------------- 147 (263)
T ss_dssp SBHHHHHHHHH----H-HT--CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCC-------------
T ss_pred CcHHHHHHHhh----h-hc--chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCC-------------
Confidence 11222221100 0 00 11245566677777775 54 4556789999999998766544311
Q ss_pred hcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 169 LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.-+..+|+....++.+.+.+.+.|++.+
T Consensus 148 --------~lllLDEPts~LD~~~~~~l~~~L~~~~ 175 (263)
T 2pjz_A 148 --------EIVGLDEPFENVDAARRHVISRYIKEYG 175 (263)
T ss_dssp --------SEEEEECTTTTCCHHHHHHHHHHHHHSC
T ss_pred --------CEEEEECCccccCHHHHHHHHHHHHHhc
Confidence 1245677778888888888888888764
No 89
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.73 E-value=5.9e-09 Score=102.81 Aligned_cols=151 Identities=13% Similarity=0.125 Sum_probs=91.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
+++.+++|+.++|+||||||||||+++|++...+ +.+.+++.++... ....++. ...+.++....-..
T Consensus 362 v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~----~~~~~~~------~i~~v~Q~~~l~~~ 431 (582)
T 3b60_A 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREY----TLASLRN------QVALVSQNVHLFND 431 (582)
T ss_dssp EEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTB----CHHHHHH------TEEEECSSCCCCSS
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEcccc----CHHHHHh------hCeEEccCCcCCCC
Confidence 5677899999999999999999999999998765 5577787766432 1111111 01122221111112
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKV------------TNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~------------t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.-.. .....++++..+++.+++.+...+ ...+|||+.|+++...++..-.
T Consensus 432 tv~eni~~~~--------~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p---- 499 (582)
T 3b60_A 432 TVANNIAYAR--------TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS---- 499 (582)
T ss_dssp BHHHHHHTTT--------TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC----
T ss_pred CHHHHHhccC--------CCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC----
Confidence 2233322100 001123456666677777554332 2579999999998766554311
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
.-+..+|+....++.+.+.+.+++++.
T Consensus 500 -----------------~illlDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b60_A 500 -----------------PILILDEATSALDTESERAIQAALDEL 526 (582)
T ss_dssp -----------------SEEEEETTTSSCCHHHHHHHHHHHHHH
T ss_pred -----------------CEEEEECccccCCHHHHHHHHHHHHHH
Confidence 124567788888888888888888765
No 90
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.69 E-value=8.2e-10 Score=103.48 Aligned_cols=56 Identities=18% Similarity=0.089 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
+.++|+||.|.+.+++.+.+.+.+ |+.||++|...-....++|||||||||||+|.
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVIL--PSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHH--HHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHH--hccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 559999999999999999999999 99999999876666789999999999999874
No 91
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.68 E-value=8.2e-09 Score=102.12 Aligned_cols=151 Identities=16% Similarity=0.204 Sum_probs=89.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
+++.+++++.++|+||+|||||||+++|++...+ +.+.+++.++... ....++. ...+.++....-..
T Consensus 374 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~----~~~~~r~------~i~~v~Q~~~lf~~ 443 (598)
T 3qf4_B 374 ITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI----KRSSLRS------SIGIVLQDTILFST 443 (598)
T ss_dssp EEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGS----CHHHHHH------HEEEECTTCCCCSS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhC----CHHHHHh------ceEEEeCCCccccc
Confidence 5677899999999999999999999999998765 5577788777543 1111211 11222222111112
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH-H-----------HhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI-A-----------KVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L-A-----------~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.- ......+++....++.+++++. . +....+|||+.|+++...++..-.
T Consensus 444 tv~eni~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p---- 510 (598)
T 3qf4_B 444 TVKENLKY---------GNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANP---- 510 (598)
T ss_dssp BHHHHHHS---------SSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCC----
T ss_pred cHHHHHhc---------CCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC----
Confidence 22222211 0000111223344444444332 2 223579999999998766544311
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.-+..+|+....++.+...+.+++++.+
T Consensus 511 -----------------~illlDEpts~LD~~~~~~i~~~l~~~~ 538 (598)
T 3qf4_B 511 -----------------KILILDEATSNVDTKTEKSIQAAMWKLM 538 (598)
T ss_dssp -----------------SEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred -----------------CEEEEECCccCCCHHHHHHHHHHHHHHc
Confidence 1244677888888888889988888764
No 92
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.67 E-value=6.3e-09 Score=102.50 Aligned_cols=151 Identities=15% Similarity=0.184 Sum_probs=88.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+++++.++|+||||||||||+++|++...+ +.+.+++.++... ....++. ...+.++....-..
T Consensus 360 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~----~~~~~r~------~i~~v~Q~~~l~~~ 429 (578)
T 4a82_A 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF----LTGSLRN------QIGLVQQDNILFSD 429 (578)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGS----CHHHHHH------TEEEECSSCCCCSS
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhC----CHHHHhh------heEEEeCCCccCcc
Confidence 4677899999999999999999999999998765 5677788776542 1111111 01222221111112
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HH-----------HhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IA-----------KVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA-----------~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.- .+.....++....++..++.+ +. ++...+|||+.|+++...++..-.
T Consensus 430 tv~eni~~---------~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p---- 496 (578)
T 4a82_A 430 TVKENILL---------GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNP---- 496 (578)
T ss_dssp BHHHHHGG---------GCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCC----
T ss_pred cHHHHHhc---------CCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCC----
Confidence 22222211 011111233333344444422 22 223579999999998776554311
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.-+..+|+....++.+.+.+.+++++.+
T Consensus 497 -----------------~illlDEpts~LD~~~~~~i~~~l~~~~ 524 (578)
T 4a82_A 497 -----------------PILILDEATSALDLESESIIQEALDVLS 524 (578)
T ss_dssp -----------------SEEEEESTTTTCCHHHHHHHHHHHHHHT
T ss_pred -----------------CEEEEECccccCCHHHHHHHHHHHHHHc
Confidence 1244677778888888888888887664
No 93
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.67 E-value=7.1e-09 Score=102.47 Aligned_cols=154 Identities=12% Similarity=0.102 Sum_probs=92.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+++|+.++|+||||||||||+++|++...+ +.+.+++.++... ....++. ...+.++....-..
T Consensus 363 isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~----~~~~~~~------~i~~v~Q~~~l~~~ 432 (595)
T 2yl4_A 363 FSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQL----NPVWLRS------KIGTVSQEPILFSC 432 (595)
T ss_dssp EEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTB----CHHHHHH------SEEEECSSCCCCSS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhC----CHHHHHh------ceEEEccCCcccCC
Confidence 5677899999999999999999999999998765 5577787766432 1111111 01122221111112
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKV------------TNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA~~------------t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.- ... ......++++..+++.+++.+.... ...||||++|+++...++..-.
T Consensus 433 tv~eni~~-~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p---- 502 (595)
T 2yl4_A 433 SIAENIAY-GAD-----DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNP---- 502 (595)
T ss_dssp BHHHHHHT-TSS-----STTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCC----
T ss_pred CHHHHHhh-cCC-----CccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCC----
Confidence 22233221 000 0001123455556666666443321 2679999999998766554311
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.-+..+|+....++.+.+.+.+++++..
T Consensus 503 -----------------~illlDEpts~LD~~~~~~i~~~l~~~~ 530 (595)
T 2yl4_A 503 -----------------KILLLDEATSALDAENEYLVQEALDRLM 530 (595)
T ss_dssp -----------------SEEEEECCCSSCCHHHHHHHHHHHHHHH
T ss_pred -----------------CEEEEECcccCCCHHHHHHHHHHHHHHh
Confidence 1245778888888899999999998864
No 94
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.60 E-value=1.8e-09 Score=95.07 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=45.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.|.++|+||+|++.+|+.+.+.+.| +++|+.|.. +.+-..|+|+|||||||||+|.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY---LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH---HHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH---HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 3669999999999999999999987 889987764 3344568999999999999874
No 95
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.60 E-value=7.2e-10 Score=107.12 Aligned_cols=56 Identities=16% Similarity=0.123 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC-CCCCCcccccCCCCCCCeeee
Q psy13773 205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQS-QSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~-~~k~s~~l~~g~~gtg~~ll~ 262 (299)
+.++|+||+|++..++.+.+.+.+ |++||++|... .....|+|||||||||||+|.
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~--~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVEL--PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHH--HHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHH--HhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 569999999999999999999999 99999988754 556679999999999999875
No 96
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.60 E-value=1.4e-08 Score=100.31 Aligned_cols=151 Identities=16% Similarity=0.201 Sum_probs=88.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+++++.++|+||+|||||||+++|++...+ +.+.+++.++... ....++. ...+.++....-..
T Consensus 362 isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~----~~~~~r~------~i~~v~Q~~~lf~~ 431 (587)
T 3qf4_A 362 VNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV----KLKDLRG------HISAVPQETVLFSG 431 (587)
T ss_dssp EEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGB----CHHHHHH------HEEEECSSCCCCSE
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccC----CHHHHHh------heEEECCCCcCcCc
Confidence 4677899999999999999999999999998765 5677888877543 1111211 11222222111112
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-H-----------HHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-I-----------AKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-L-----------A~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.- .+.....++....++..++.+ + .++...+||||.|+++...++..-.
T Consensus 432 tv~eni~~---------~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p---- 498 (587)
T 3qf4_A 432 TIKENLKW---------GREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP---- 498 (587)
T ss_dssp EHHHHHTT---------TCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCC----
T ss_pred cHHHHHhc---------cCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCC----
Confidence 22222211 000011122222222222211 1 2344679999999998766544311
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.-+..+|+....++.+.+.+.+++++.+
T Consensus 499 -----------------~illlDEpts~LD~~~~~~i~~~l~~~~ 526 (587)
T 3qf4_A 499 -----------------KVLILDDCTSSVDPITEKRILDGLKRYT 526 (587)
T ss_dssp -----------------SEEEEESCCTTSCHHHHHHHHHHHHHHS
T ss_pred -----------------CEEEEECCcccCCHHHHHHHHHHHHHhC
Confidence 1244677888888889999999988764
No 97
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.57 E-value=4.8e-08 Score=93.40 Aligned_cols=59 Identities=36% Similarity=0.530 Sum_probs=53.6
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHH
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKV 76 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a 76 (299)
+..++.++||+||||||||++++++|..++ ..++.+++.++.+.+.++++. ++.+|..+
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a 119 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRA 119 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHT
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHH
Confidence 455678999999999999999999999998 889999999999999999887 88888876
No 98
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.56 E-value=1.5e-07 Score=86.72 Aligned_cols=41 Identities=34% Similarity=0.613 Sum_probs=32.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhhh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT 59 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~ 59 (299)
.++..++|+||||||||+++++++..++. .++.++|..+..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 45679999999999999999999998874 556666655443
No 99
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.56 E-value=4e-08 Score=93.44 Aligned_cols=74 Identities=23% Similarity=0.385 Sum_probs=56.8
Q ss_pred cCcChhhhhcCCCC-CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh-ccccc-cHHHHHHHHHHHHHH
Q psy13773 6 PVEHPEKFLKFGMQ-PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGE-SEANVRDIFDKVTME 79 (299)
Q Consensus 6 pl~~p~~~~sl~i~-~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~-~~~g~-~~~~i~~~f~~a~~~ 79 (299)
|..++.++..+... ++.+++|+|||||||||++++||..++..++.+++..+.. .|+|. .+..++.+|..+...
T Consensus 34 ~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~ 110 (444)
T 1g41_A 34 RWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL 110 (444)
T ss_dssp HHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH
T ss_pred HHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhc
Confidence 33444444444332 4678999999999999999999999999999999998887 58885 788899999887643
No 100
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.55 E-value=6.9e-08 Score=108.40 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=36.5
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh
Q psy13773 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 58 (299)
Q Consensus 18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~ 58 (299)
+....++++.||+|||||++++.+|..++..++.++|++-.
T Consensus 642 l~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~l 682 (2695)
T 4akg_A 642 LHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSF 682 (2695)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSC
T ss_pred HHhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCC
Confidence 34567899999999999999999999999999999997654
No 101
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.54 E-value=6.3e-10 Score=98.46 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=48.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.|.++|+||.|.+++++.+.+.+.+ ++||+.|.. +.+...|+|||||||||||+|.
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDF---LKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHH---HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH---HHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 4679999999999999999999887 889987754 4455678999999999999985
No 102
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.49 E-value=5.2e-08 Score=96.36 Aligned_cols=164 Identities=13% Similarity=0.187 Sum_probs=83.5
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchh----hhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE----LLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA 92 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~----l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~ 92 (299)
.+.+|+.++|+||||+|||||+|+|++.+.+....+.... +...+.+.. +...|.......+...........
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~ 175 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSE---LQNYFTKMLEDDIKAIIKPQYVDN 175 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTST---HHHHHHHHHHTSCCCEEECCCTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChh---hhhhhhHHHHHhhhhhhchhhhhh
Confidence 3568999999999999999999999998876655553211 011111111 112222111100000000000000
Q ss_pred hhHHHhhcCccchhhc-CCCccHHHHHhhhcccCCHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13773 93 LRETIVEVPNITWEDI-GGLEGVKRELQELVQDVDLNYI-AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLA 170 (299)
Q Consensus 93 ~~~~l~~l~~~l~~~~-~r~p~~~~R~~~l~~~v~l~~L-A~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~ 170 (299)
....+..........+ .......+++..+++.+++..+ .+....||||++|++...+++..-.
T Consensus 176 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p--------------- 240 (608)
T 3j16_B 176 IPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEA--------------- 240 (608)
T ss_dssp HHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCC---------------
T ss_pred hhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCC---------------
Confidence 0000000000000000 0011223566677777888554 4556899999999998776554311
Q ss_pred CCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
..+..+|+....++-+...+.+.+++++
T Consensus 241 ------~llllDEPts~LD~~~~~~l~~~l~~l~ 268 (608)
T 3j16_B 241 ------DVYMFDEPSSYLDVKQRLNAAQIIRSLL 268 (608)
T ss_dssp ------SEEEEECTTTTCCHHHHHHHHHHHHGGG
T ss_pred ------CEEEEECcccCCCHHHHHHHHHHHHHHH
Confidence 1244566666666677777777777664
No 103
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.44 E-value=1.1e-07 Score=101.77 Aligned_cols=151 Identities=13% Similarity=0.190 Sum_probs=91.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+++|+.++|+||+|||||||++.|.+...+ +.+.+++.++... ....++.- ..++++..-.-..
T Consensus 437 isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~----~~~~lr~~------i~~v~Q~~~Lf~~ 506 (1321)
T 4f4c_A 437 MNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDI----NLEFLRKN------VAVVSQEPALFNC 506 (1321)
T ss_dssp EEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTS----CHHHHHHH------EEEECSSCCCCSE
T ss_pred eEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhc----cHHHHhhc------ccccCCcceeeCC
Confidence 5778899999999999999999999999998875 5577888777543 11222210 1222222222222
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HHHHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NYIAKV-----------TNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~LA~~-----------t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.- .+.....+++...++..++ +.+... -..+||||.|+++.+.+...-.
T Consensus 507 TI~eNI~~---------g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~---- 573 (1321)
T 4f4c_A 507 TIEENISL---------GKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNP---- 573 (1321)
T ss_dssp EHHHHHHT---------TCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCC----
T ss_pred chhHHHhh---------hcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCC----
Confidence 22222211 1111123445545544444 233333 2459999999998765443211
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.-+..+|+....+.-+...+.++|++..
T Consensus 574 -----------------~IliLDE~tSaLD~~te~~i~~~l~~~~ 601 (1321)
T 4f4c_A 574 -----------------KILLLDEATSALDAESEGIVQQALDKAA 601 (1321)
T ss_dssp -----------------SEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred -----------------CEEEEecccccCCHHHHHHHHHHHHHHh
Confidence 1244667778888889899999998864
No 104
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.43 E-value=7.2e-09 Score=111.93 Aligned_cols=56 Identities=7% Similarity=-0.040 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCCC----------CCCCCC-------------------CCCCCCcccccCCCCC
Q psy13773 206 SVNDADIRKYEMFAQTLQQSRGFGTNFRF----------PSNPNQ-------------------SQSGGPNSAPANESGT 256 (299)
Q Consensus 206 sVsw~DIggL~~vk~~i~~ti~~~~Plk~----------Pe~~~~-------------------~~~k~s~~l~~g~~gt 256 (299)
.|+|+||||++++|++.+++++| |++| |+.|.. |+.|-+.+|+||||||
T Consensus 1016 ~~~~~~~~~~~~~k~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1016 GSSTGSMSAIDENKQKALAAALG--QIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp --------CTTHHHHHHHHHHHH--HHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred CceeeecCCccHHHHHHHHHHHH--HHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 39999999999999999999999 9966 888865 3556667999999999
Q ss_pred CCeeeec
Q psy13773 257 GGILLMF 263 (299)
Q Consensus 257 g~~ll~~ 263 (299)
|||||-.
T Consensus 1094 GKT~la~ 1100 (1706)
T 3cmw_A 1094 GKTTLTL 1100 (1706)
T ss_dssp SHHHHHH
T ss_pred ChHHHHH
Confidence 9999853
No 105
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.43 E-value=7.9e-09 Score=99.35 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=47.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.+.++|+||+|++++|+++.+.+.+ +++|+.|.. +.+-..|+|||||||||||+|.
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~---l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF---LKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH---HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH---hhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 3569999999999999999999988 788886643 4455568999999999999984
No 106
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.39 E-value=7.9e-08 Score=102.96 Aligned_cols=154 Identities=18% Similarity=0.266 Sum_probs=92.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+++|+.++|+|++|||||||+++|.+... .+.|.||+.++... ....+|..+ .+.++....-..
T Consensus 1098 isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i----~~~~lR~~i------~~V~Qdp~LF~g 1167 (1321)
T 4f4c_A 1098 LSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTL----NPEHTRSQI------AIVSQEPTLFDC 1167 (1321)
T ss_dssp EEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTB----CHHHHHTTE------EEECSSCCCCSE
T ss_pred eeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhC----CHHHHHhhe------EEECCCCEeeCc
Confidence 567889999999999999999999999999765 47788999888654 112222110 122222111122
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHH-HHH-----------hcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-IAK-----------VTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~-LA~-----------~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.- .+++ ..-.++++...++..++++ +.. .-..|||||.|++|.+.++.. +
T Consensus 1168 TIreNI~~---gld~----~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr--~--- 1235 (1321)
T 4f4c_A 1168 SIAENIIY---GLDP----SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR--N--- 1235 (1321)
T ss_dssp EHHHHHSS---SSCT----TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS--C---
T ss_pred cHHHHHhc---cCCC----CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh--C---
Confidence 22222210 0111 0011233444444444422 222 224599999999987654432 1
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhccC
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~P 205 (299)
+ .-+..+|.....+.-|...+.++|++...
T Consensus 1236 -------------~---~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~ 1265 (1321)
T 4f4c_A 1236 -------------P---KILLLDEATSALDTESEKVVQEALDRARE 1265 (1321)
T ss_dssp -------------C---SEEEEESCCCSTTSHHHHHHHHHHTTTSS
T ss_pred -------------C---CEEEEeCccccCCHHHHHHHHHHHHHHcC
Confidence 1 12446778888889999999999988653
No 107
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.37 E-value=8e-08 Score=93.79 Aligned_cols=141 Identities=14% Similarity=0.155 Sum_probs=82.2
Q ss_pred cCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC--eecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCchh
Q psy13773 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSA 92 (299)
Q Consensus 15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~--~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~~ 92 (299)
++.+.+++.++|+||||||||||+|+|++.+.+. .+.++...+.-. .... . ......
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~-~q~~-------------------~-~~~~~t 346 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYK-PQRI-------------------F-PNYDGT 346 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEE-CSSC-------------------C-CCCSSB
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEee-chhc-------------------c-cccCCC
Confidence 3446789999999999999999999999987654 344433222100 0000 0 000001
Q ss_pred hhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13773 93 LRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAG 171 (299)
Q Consensus 93 ~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~ 171 (299)
..+.+..... ........+...+++.+++..++ +....||||++|+++...++..-.
T Consensus 347 v~~~l~~~~~------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p---------------- 404 (538)
T 3ozx_A 347 VQQYLENASK------DALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEA---------------- 404 (538)
T ss_dssp HHHHHHHHCS------STTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCC----------------
T ss_pred HHHHHHHhhh------hccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC----------------
Confidence 1111111000 00011223456677778886554 455789999999998776554311
Q ss_pred CcccccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 172 NPAASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
..+..+|+....++.+...+.+.|+++
T Consensus 405 -----~lLlLDEPT~gLD~~~~~~i~~~l~~l 431 (538)
T 3ozx_A 405 -----DLYVLDQPSSYLDVEERYIVAKAIKRV 431 (538)
T ss_dssp -----SEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred -----CEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 124466777777777888888877765
No 108
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.36 E-value=1.5e-07 Score=100.50 Aligned_cols=151 Identities=17% Similarity=0.266 Sum_probs=85.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+++++.++|+||+|||||||+++|++...+ +.+.+++.++... ....++.. ..+.++....-..
T Consensus 409 isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~----~~~~~r~~------i~~v~Q~~~l~~~ 478 (1284)
T 3g5u_A 409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTI----NVRYLREI------IGVVSQEPVLFAT 478 (1284)
T ss_dssp EEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGS----CHHHHHHH------EEEECSSCCCCSS
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhC----CHHHHHhh------eEEEcCCCccCCc
Confidence 5677899999999999999999999999998765 5677888777543 11122110 1222222211112
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHH-HHH-----------HhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN-YIA-----------KVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~-~LA-----------~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
+.++.+.- .+.....+++...++..++. .+. .+...+||||.|+++.+.++..-.+
T Consensus 479 ti~eNi~~---------g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~--- 546 (1284)
T 3g5u_A 479 TIAENIRY---------GREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK--- 546 (1284)
T ss_dssp CHHHHHHH---------HCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCS---
T ss_pred cHHHHHhc---------CCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCC---
Confidence 22222211 00000112222222222221 122 2234799999999988765543111
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
-+..+|+....++-+.+.+.++++...
T Consensus 547 ------------------iliLDEpts~LD~~~~~~i~~~l~~~~ 573 (1284)
T 3g5u_A 547 ------------------ILLLDEATSALDTESEAVVQAALDKAR 573 (1284)
T ss_dssp ------------------EEEEESTTCSSCHHHHHHHHHHHHHHH
T ss_pred ------------------EEEEECCCCCCCHHHHHHHHHHHHHHc
Confidence 244667777777778888888887653
No 109
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.35 E-value=2.1e-08 Score=96.92 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=47.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCeeee
Q psy13773 205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQ-SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~-~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
|.++|+||.|++++|+++.+.+.+ +++|+.|.. +.+-..|+|||||||||||+|.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~---l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF---LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH---HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH---hhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 679999999999999999999887 788886654 4455668999999999999985
No 110
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.33 E-value=5.2e-07 Score=81.03 Aligned_cols=58 Identities=24% Similarity=0.509 Sum_probs=49.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcC-------CeecccchhhhhccccccHHHHHHHHHHHH
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKGPELLTMWFGESEANVRDIFDKVT 77 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~-------~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~ 77 (299)
++..++|+||+|||||++++++|..+.. .++++++.++...+.+.....+..+|..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~ 130 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM 130 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcC
Confidence 4457999999999999999999998742 788899999998888888888888887653
No 111
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.30 E-value=1.1e-08 Score=89.84 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=44.9
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-CCCCCCCCcccccCCCCCCCeeee
Q psy13773 203 ARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNP-NQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 203 ~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~-~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
..|.++|+||+|+++++.++.+.+.+ +.+|+.| .-++.-..|+++|||||||||+|.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF---LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH---HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH---HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 45789999999999999999988776 5555533 224455567999999999999875
No 112
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.30 E-value=1.5e-07 Score=91.94 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=29.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
.+++.++|+||||||||||+|+|++.+.+....+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 4788999999999999999999999887655444
No 113
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.27 E-value=2.3e-07 Score=90.57 Aligned_cols=138 Identities=15% Similarity=0.150 Sum_probs=81.1
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-CchhhhH
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SPSALRE 95 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~~~~~~ 95 (299)
.+.+++.++|+||||||||||+|+|++...+....|....-+. +.++.... ......+
T Consensus 308 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~---------------------~v~Q~~~~~~~~tv~~ 366 (538)
T 1yqt_A 308 EIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA---------------------YKPQYIKADYEGTVYE 366 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEE---------------------EECSSCCCCCSSBHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEE---------------------EEecCCcCCCCCcHHH
Confidence 3578999999999999999999999998765433332100000 00000000 0000111
Q ss_pred HHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy13773 96 TIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPA 174 (299)
Q Consensus 96 ~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~ 174 (299)
.+.... ... ....+++..+++.+++...+ +....||||++|+++...++..-
T Consensus 367 ~~~~~~---~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~-------------------- 419 (538)
T 1yqt_A 367 LLSKID---ASK----LNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRD-------------------- 419 (538)
T ss_dssp HHHHHH---HHH----HTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSC--------------------
T ss_pred HHHhhh---ccC----CCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhC--------------------
Confidence 111000 000 01134556677788885544 45578999999999876544321
Q ss_pred cccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 175 ASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
...+..+|+....++-+.+.+.+.|+++
T Consensus 420 -p~lLlLDEPt~~LD~~~~~~i~~~l~~l 447 (538)
T 1yqt_A 420 -ADIYLLDEPSAYLDVEQRLAVSRAIRHL 447 (538)
T ss_dssp -CSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred -CCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 1135577788888888888999988876
No 114
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.25 E-value=1e-07 Score=93.16 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=30.2
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFIS 51 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~ 51 (299)
.+.+++.++|+||||||||||+|+|++.+.+....
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 47899999999999999999999999987654433
No 115
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.23 E-value=3e-07 Score=98.19 Aligned_cols=153 Identities=12% Similarity=0.187 Sum_probs=85.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--CeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~~~~ 91 (299)
++|.+.+|+.+.|+||+|||||||+++|++...+ +.+.+++.++... ....++. ...+.++....-..
T Consensus 1052 vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~----~~~~~r~------~i~~v~Q~~~l~~~ 1121 (1284)
T 3g5u_A 1052 LSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQL----NVQWLRA------QLGIVSQEPILFDC 1121 (1284)
T ss_dssp CCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSS----CHHHHTT------SCEEEESSCCCCSS
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccC----CHHHHHh------ceEEECCCCccccc
Confidence 5677899999999999999999999999997764 5677888777532 1111111 00111111111111
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCHHHH------------HHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI------------AKVTNGFSGADLTEICQRACKLAIRQSIE 159 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~L------------A~~t~glSggDl~~Lv~~A~~~a~~r~~~ 159 (299)
..++.+.- ... .+..+ .+++...++..++.+. ......||||++|+++...++..-.
T Consensus 1122 ti~eNi~~-~~~-----~~~~~-~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p---- 1190 (1284)
T 3g5u_A 1122 SIAENIAY-GDN-----SRVVS-YEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQP---- 1190 (1284)
T ss_dssp BHHHHHTC-CCS-----SCCCC-HHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCC----
T ss_pred cHHHHHhc-cCC-----CCCCC-HHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCC----
Confidence 22222210 000 00001 1112222222222211 1223469999999999876554311
Q ss_pred HHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 160 TEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
.-+..+|+....++-+.+.+.++|++..
T Consensus 1191 -----------------~iLiLDEpTs~lD~~~~~~i~~~l~~~~ 1218 (1284)
T 3g5u_A 1191 -----------------HILLLDEATSALDTESEKVVQEALDKAR 1218 (1284)
T ss_dssp -----------------SSEEEESCSSSCCHHHHHHHHHHHHHHS
T ss_pred -----------------CEEEEeCCcccCCHHHHHHHHHHHHHhC
Confidence 1245677788888888888998887764
No 116
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.23 E-value=2.6e-07 Score=91.42 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=30.2
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFIS 51 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~ 51 (299)
.+.+++.++|+||||+|||||+|+|++.+.+....
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 46899999999999999999999999987654433
No 117
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.22 E-value=2.9e-07 Score=91.07 Aligned_cols=138 Identities=15% Similarity=0.146 Sum_probs=79.1
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhcCC-CchhhhH
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGKS-SPSALRE 95 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~~~-~~~~~~~ 95 (299)
.+.+++.++|+||||||||||+|+|++.+.+....|....-+. +.++.... ......+
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~---------------------~v~Q~~~~~~~~tv~e 436 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA---------------------YKPQYIKAEYEGTVYE 436 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEE---------------------EECSSCCCCCSSBHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEE---------------------EEecCccCCCCCcHHH
Confidence 3578999999999999999999999998765443332100000 00000000 0000111
Q ss_pred HHhhcCccchhhcCCCccHHHHHhhhcccCCHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy13773 96 TIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIA-KVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPA 174 (299)
Q Consensus 96 ~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l~~LA-~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~ 174 (299)
.+.... ... ....+++..+++.+++..++ +....||||++|+++...++..-
T Consensus 437 ~~~~~~---~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~-------------------- 489 (607)
T 3bk7_A 437 LLSKID---SSK----LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRD-------------------- 489 (607)
T ss_dssp HHHHHH---HHH----HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSC--------------------
T ss_pred HHHhhh---ccC----CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhC--------------------
Confidence 110000 000 00123445566666665444 44578999999999876544321
Q ss_pred cccccccCCCCCCcccccHHHHHHHHHhc
Q psy13773 175 ASAAMETEDEDDPVPEITRAHFEEAMRFA 203 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~it~~Df~~AL~~~ 203 (299)
...+..+|+....++.+...+.+.|+++
T Consensus 490 -p~lLlLDEPt~~LD~~~~~~l~~~l~~l 517 (607)
T 3bk7_A 490 -ADIYLLDEPSAYLDVEQRLAVSRAIRHL 517 (607)
T ss_dssp -CSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred -CCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 1134567777888888888898888876
No 118
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.21 E-value=7.5e-07 Score=82.34 Aligned_cols=56 Identities=30% Similarity=0.544 Sum_probs=46.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhc-ccccc-HHHHHHHHHH
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGES-EANVRDIFDK 75 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~-~~g~~-~~~i~~~f~~ 75 (299)
++..++|+||||||||+++++||..++..++.++|.++... +.|.. ...++.+|..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~ 107 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 107 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHH
Confidence 56789999999999999999999999999999999988743 56654 4556666654
No 119
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.21 E-value=7.9e-07 Score=74.09 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=35.0
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l 57 (299)
.+.+++.++|+|||||||||++++|++.++.+.+.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 35788999999999999999999999987777777776655
No 120
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.16 E-value=9.1e-07 Score=73.30 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=30.6
Q ss_pred hhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 12 ~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
...++.+..+..++|+||+|||||||++++++.+.
T Consensus 29 ~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 29 FVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567778899999999999999999999999773
No 121
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.16 E-value=7e-06 Score=70.17 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchhh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPEL 57 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~l 57 (299)
.+..++|+||+|||||+++++++..+. ..++++++.++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 577999999999999999999999765 34555655543
No 122
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.15 E-value=1.2e-06 Score=71.81 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=36.7
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccchhhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELL 58 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~~l~ 58 (299)
++|.+.+++.++|.||+|||||||+|+|++.+. .+.+.+++.++.
T Consensus 26 vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLV 71 (158)
T ss_dssp HHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCE
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeee
Confidence 577889999999999999999999999999873 244566665554
No 123
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.12 E-value=2.9e-06 Score=74.98 Aligned_cols=60 Identities=33% Similarity=0.475 Sum_probs=43.9
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh-hccccccHHHHHHHHHHHH
Q psy13773 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGESEANVRDIFDKVT 77 (299)
Q Consensus 18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~-~~~~g~~~~~i~~~f~~a~ 77 (299)
..++..++|+||+|||||+++++++...+..++.++|.+.. ..........++.+|..+.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~ 121 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAY 121 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999999999888776532 1111122345666776654
No 124
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.09 E-value=3.8e-06 Score=68.85 Aligned_cols=56 Identities=20% Similarity=0.441 Sum_probs=38.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhh----------cCCeecccchhhhh--ccccccHHHHHHHHH
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLT--MWFGESEANVRDIFD 74 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l----------~~~~i~i~~~~l~~--~~~g~~~~~i~~~f~ 74 (299)
..+..++|+||+|+|||+++++++..+ +..++.+++..+.. .+.+.....++.++.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLN 108 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHH
Confidence 456789999999999999999999986 45567777766642 223333344444444
No 125
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.06 E-value=2.2e-06 Score=72.29 Aligned_cols=40 Identities=33% Similarity=0.457 Sum_probs=30.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVK 53 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~ 53 (299)
++|.+.++..++|+|++||||||+++.|+..++..++..+
T Consensus 18 ~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 18 LYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 5677788899999999999999999999999987776554
No 126
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.04 E-value=1.4e-06 Score=75.59 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=34.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC--eecccc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISVKG 54 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~--~i~i~~ 54 (299)
++|.+.+++.++|.||||||||||+|+|++.+.+. .+.+++
T Consensus 27 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 69 (229)
T 2pze_A 27 INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69 (229)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC
Confidence 56778999999999999999999999999987654 344443
No 127
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.03 E-value=5.1e-06 Score=74.15 Aligned_cols=55 Identities=31% Similarity=0.611 Sum_probs=43.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh-cccccc-HHHHHHHHH
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGES-EANVRDIFD 74 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~-~~~g~~-~~~i~~~f~ 74 (299)
.+..++|+||+|||||+++++++..++..++.++|.++.. .+.+.. ...++.++.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 105 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 105 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHH
Confidence 4678999999999999999999999999999999988765 344432 344555554
No 128
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.03 E-value=1e-07 Score=84.91 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-CCCCCCCCcccccCCCCCCCeeee
Q psy13773 205 RSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNP-NQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 205 PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~-~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
|.++|+||.|++++++++.+.+.+ +.+|..| .-++.-..|+++|||||||||+|.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~---~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF---LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH---HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH---HHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 679999999999999999988766 5555432 223444567999999999999875
No 129
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.02 E-value=2.4e-06 Score=73.43 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=27.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
++|.+.+++.++|+||||||||||+++|++... +.+.+
T Consensus 16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-G~i~~ 53 (218)
T 1z6g_A 16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-NYFYF 53 (218)
T ss_dssp ------CCCCEEEECSTTSSHHHHHHHHHHHST-TTEEE
T ss_pred CceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-CcEEE
Confidence 567889999999999999999999999999773 44444
No 130
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.02 E-value=1.4e-06 Score=76.09 Aligned_cols=41 Identities=29% Similarity=0.552 Sum_probs=34.3
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG 54 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~ 54 (299)
++|.+.+++.++|+||||||||||+|+|++.+.+ +.+.+++
T Consensus 24 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 66 (237)
T 2cbz_A 24 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG 66 (237)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 5678899999999999999999999999998764 4455543
No 131
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.01 E-value=2.8e-06 Score=82.99 Aligned_cols=38 Identities=34% Similarity=0.501 Sum_probs=33.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l 57 (299)
++..++|+||||||||||+++|++.++..++.++|..+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 67899999999999999999999999988888877654
No 132
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.00 E-value=2.3e-07 Score=88.74 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=40.9
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 203 ARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 203 ~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.+|...|+||.|.+++++.+.+.+++ ++. +.....|+|||||||||||+|-
T Consensus 30 ~~~~~~~~~iiG~~~~~~~l~~~~~~---~~~------~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 30 GLAKQAASGLVGQENAREACGVIVEL---IKS------KKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHH---HHT------TCCTTCEEEEECCTTSSHHHHH
T ss_pred cChhhchhhccCHHHHHHHHHHHHHH---HHh------CCCCCCeEEEECCCcCCHHHHH
Confidence 35778899999999999998888776 332 3334568999999999999874
No 133
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.00 E-value=1.8e-06 Score=85.38 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=24.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANECQANF 49 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~ 49 (299)
+.++|+||||||||||+|+|++.+.+..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~ 406 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDE 406 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSB
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 6799999999999999999999876543
No 134
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.99 E-value=4.9e-06 Score=85.97 Aligned_cols=136 Identities=18% Similarity=0.239 Sum_probs=80.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHHHHHHhhhhc-CC-Cch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMG-KS-SPS 91 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~-~~-~~~ 91 (299)
++|.+.+|+.++|+||||||||||+|+|++ + .+.+...... ++ ..+..+.. .. ...
T Consensus 454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--G----~i~g~~~~~~--------~~--------~~~v~q~~~~~~~~l 511 (986)
T 2iw3_A 454 TQLRLKRARRYGICGPNGCGKSTLMRAIAN--G----QVDGFPTQEE--------CR--------TVYVEHDIDGTHSDT 511 (986)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHH--T----CSTTCCCTTT--------SC--------EEETTCCCCCCCTTS
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhC--C----CcCCCccccc--------ee--------EEEEcccccccccCC
Confidence 577889999999999999999999999995 1 1111111000 00 00111100 00 011
Q ss_pred hhhHHHhhcCccchhhcCCCccHHHHHhhhcccCCH-HH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13773 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDL-NY-IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKL 169 (299)
Q Consensus 92 ~~~~~l~~l~~~l~~~~~r~p~~~~R~~~l~~~v~l-~~-LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~ 169 (299)
...+.+.. . .... .+|+..+++.+++ .. +.+....||||++|++....++..-.
T Consensus 512 tv~e~l~~------~-~~~~---~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P-------------- 567 (986)
T 2iw3_A 512 SVLDFVFE------S-GVGT---KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNA-------------- 567 (986)
T ss_dssp BHHHHHHT------T-CSSC---HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTC--------------
T ss_pred cHHHHHHH------h-hcCH---HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCC--------------
Confidence 11122211 0 0111 5677778888888 44 45566889999999998776554311
Q ss_pred cCCcccccccccCCCCCCcccccHHHHHHHHHh
Q psy13773 170 AGNPAASAAMETEDEDDPVPEITRAHFEEAMRF 202 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~ 202 (299)
.-+..+|+....++.+.+.|.+.|++
T Consensus 568 -------~lLLLDEPTs~LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 568 -------DILLLDEPTNHLDTVNVAWLVNYLNT 593 (986)
T ss_dssp -------SEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred -------CEEEEECCccCCCHHHHHHHHHHHHh
Confidence 12446667777777777888887776
No 135
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.97 E-value=6.1e-06 Score=67.57 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhh----------cCCeecccchhhh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL 58 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l----------~~~~i~i~~~~l~ 58 (299)
.....++|+||+|+|||+++++++..+ +..++.+++..+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLI 90 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhh
Confidence 446789999999999999999999987 4455666666554
No 136
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.96 E-value=2.1e-05 Score=74.82 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=32.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhh-----cCCeecccchhhhh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLT 59 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l-----~~~~i~i~~~~l~~ 59 (299)
+..++|+||+|+|||||+++|++.+ +..++++++.++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~ 173 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN 173 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence 4679999999999999999999987 56678888776543
No 137
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.90 E-value=6e-07 Score=85.35 Aligned_cols=62 Identities=10% Similarity=0.013 Sum_probs=50.5
Q ss_pred ccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC--CCCcccccCCCCCCCeeee
Q psy13773 191 ITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQS--GGPNSAPANESGTGGILLM 262 (299)
Q Consensus 191 it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~--k~s~~l~~g~~gtg~~ll~ 262 (299)
+|+.++.+.|. ++|.|.+++|+.+...+.+ |.+++.+|..... ...+||||||||||||++.
T Consensus 4 ~tP~~i~~~Ld--------~~IvGqe~ak~~l~~av~~--~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 4 MTPREIVSELD--------QHIIGQADAKRAVAIALRN--RWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCHHHHHHHHH--------TTCCSCHHHHHHHHHHHHH--HHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHH
T ss_pred CCHHHHHHHHH--------HHhCCHHHHHHHHHHHHHH--HHhhhccccccccccCCceEEEEcCCCCCHHHHH
Confidence 67788888775 5677999999999999999 9888888764432 2468999999999999873
No 138
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.89 E-value=1.1e-05 Score=74.72 Aligned_cols=55 Identities=25% Similarity=0.478 Sum_probs=39.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh-hcccccc-HHHHHHHHH
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGES-EANVRDIFD 74 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~-~~~~g~~-~~~i~~~f~ 74 (299)
.+..++|+||+|||||+++++||..++..++.++|..+. ..+.+.. ...+..++.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 127 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQ 127 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHh
Confidence 456799999999999999999999999999999988775 2344432 334444443
No 139
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.89 E-value=7e-06 Score=68.95 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=25.8
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
+.+.+++.++|.||||||||||+++|++...
T Consensus 2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 2 NAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4566789999999999999999999999753
No 140
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.88 E-value=7e-06 Score=69.69 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=25.7
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
..+.+++.++|+||||||||||+|+|++.+.
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5788999999999999999999999999874
No 141
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.87 E-value=3.6e-06 Score=75.78 Aligned_cols=41 Identities=27% Similarity=0.388 Sum_probs=34.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG 54 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~ 54 (299)
++|.+.+++.++|+||||||||||+|+|++.+.+ +.+.+++
T Consensus 57 isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 99 (290)
T 2bbs_A 57 INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99 (290)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 4677899999999999999999999999998754 4455543
No 142
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.85 E-value=2.6e-06 Score=85.27 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=23.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHH
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLA 38 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLl 38 (299)
++|.+.+++.+.|+||||||||||+
T Consensus 37 vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 37 IDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEEETTSEEEEECSTTSSHHHHH
T ss_pred cEEEECCCCEEEEECCCCCCHHHHh
Confidence 6778899999999999999999997
No 143
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.85 E-value=1.1e-05 Score=68.04 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l 57 (299)
.+++.++|.|||||||||++++|++.++ .+.+++.++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g--~~~i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETG--LEFAEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHC--CEEEEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhC--CeEEccccc
Confidence 5688999999999999999999999884 455555544
No 144
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.84 E-value=8e-06 Score=69.39 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=32.1
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHHhhc-----CCeecccchhh
Q psy13773 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 57 (299)
Q Consensus 18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~-----~~~i~i~~~~l 57 (299)
..++..++|.||||||||||+++|++.+. .+.+.+++..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 46789999999999999999999999876 34555655443
No 145
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.82 E-value=7.8e-06 Score=67.40 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=25.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHH
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIA 42 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La 42 (299)
++|.+.+++.++|+||||||||||++++.
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 46778899999999999999999999744
No 146
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.81 E-value=1.1e-05 Score=70.39 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=27.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
++|.+.++..++|.||+|||||||+++|++.++.
T Consensus 18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp -----CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred eeccCCCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 5677889999999999999999999999998753
No 147
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.80 E-value=4.9e-06 Score=66.55 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=34.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 60 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~ 60 (299)
.+..++|+||+|||||+++++|+.... .++.++|.++...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~ 65 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID 65 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH
Confidence 456799999999999999999999877 8899998876543
No 148
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.79 E-value=1.1e-05 Score=65.34 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL 57 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l 57 (299)
+++.++|+||+|+|||||++++++.+ +...+++++.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence 78899999999999999999999977 333566665544
No 149
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.79 E-value=1.3e-05 Score=64.23 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=33.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhhhhc
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM 60 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l~~~ 60 (299)
..+..++|+||+|||||+++++|+... +..++ ++|..+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~ 65 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA 65 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc
Confidence 345679999999999999999999976 45677 988876543
No 150
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.79 E-value=1.3e-05 Score=72.65 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=32.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFI 50 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i 50 (299)
+++.+++++.++|+||||||||||+++|++.+ .+.+
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I 154 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSV 154 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEE
T ss_pred ceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceE
Confidence 57789999999999999999999999999988 4444
No 151
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.79 E-value=1.1e-05 Score=73.20 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=34.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhhhhc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM 60 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l~~~ 60 (299)
.+..++|+||+|||||||+++++..+ +..++++++.++...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~ 79 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA 79 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
Confidence 35689999999999999999999988 678888888776543
No 152
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.77 E-value=1.2e-05 Score=67.80 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHHhhcC-Ce--ecccchhh
Q psy13773 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQA-NF--ISVKGPEL 57 (299)
Q Consensus 18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~-~~--i~i~~~~l 57 (299)
..++..+.|.||+||||||++++|++.+.. +. +.+++.++
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 467899999999999999999999998842 23 36666655
No 153
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.76 E-value=2.7e-05 Score=77.86 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=26.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHH
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIA 42 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La 42 (299)
++|.+.+++.++|+||||||||||+++|.
T Consensus 341 vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 341 VSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 56778899999999999999999998764
No 154
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.76 E-value=1.8e-05 Score=75.88 Aligned_cols=56 Identities=23% Similarity=0.490 Sum_probs=37.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhh----------cCCeecccchhhhhccccccHHHHHHHHHHHH
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLTMWFGESEANVRDIFDKVT 77 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l----------~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~ 77 (299)
.....++|+||||||||+++++||..+ +..++.+++. ..+.|+.+..++.+|..+.
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~ 264 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIR 264 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHH
Confidence 345689999999999999999999987 5567777776 4556666666777777655
No 155
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.76 E-value=1.8e-05 Score=72.03 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=33.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhc----------CCeecccchhhh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQ----------ANFISVKGPELL 58 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~----------~~~i~i~~~~l~ 58 (299)
..+.+++|+||||||||++++.++.++. ..+++|+|..+.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 5788999999999999999999999883 346788887653
No 156
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.75 E-value=2e-05 Score=64.71 Aligned_cols=33 Identities=12% Similarity=0.345 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVK 53 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~ 53 (299)
+..|+|+|++||||||+++.|+..++..++.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~ 35 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG 35 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEec
Confidence 467999999999999999999999987776544
No 157
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.73 E-value=1.4e-05 Score=65.26 Aligned_cols=30 Identities=27% Similarity=0.658 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFI 50 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i 50 (299)
+..++|+|++||||||++++|++.++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 567999999999999999999999876443
No 158
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.73 E-value=9.4e-06 Score=69.95 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=22.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHH-Hhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIA-NEC 45 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La-~~l 45 (299)
++|.+.+++.++|+||+||||||++++|+ +..
T Consensus 20 ~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 20 GSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 56788899999999999999999999999 875
No 159
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.73 E-value=1.8e-05 Score=70.04 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=35.6
Q ss_pred hhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccc
Q psy13773 10 PEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKG 54 (299)
Q Consensus 10 p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~ 54 (299)
+..+..+.+.++..++|+||+||||||++++|++.+. .+.+.+++
T Consensus 14 ~~vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 14 PDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp CTHHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 4566666788999999999999999999999999764 34444443
No 160
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=2e-05 Score=76.43 Aligned_cols=40 Identities=30% Similarity=0.563 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 59 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~ 59 (299)
....++|+||+|||||++++++|.+++..+++++|.++..
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS 115 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence 4579999999999999999999999998899998876543
No 161
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.72 E-value=1.8e-05 Score=72.24 Aligned_cols=31 Identities=52% Similarity=0.665 Sum_probs=26.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFIS 51 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~ 51 (299)
...++|+||||||||||+++||+.++..+..
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~ 81 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNIHV 81 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 3679999999999999999999998655433
No 162
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.70 E-value=2.3e-05 Score=67.59 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=25.7
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIAN 43 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~ 43 (299)
++.+++.++|+||||||||||+++|+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 789999999999999999999999993
No 163
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.69 E-value=2.4e-05 Score=71.03 Aligned_cols=38 Identities=39% Similarity=0.562 Sum_probs=33.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l 57 (299)
+...++|+||+|||||+++++++..++..++.++|..+
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~ 91 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMI 91 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhc
Confidence 44579999999999999999999999999988887654
No 164
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.68 E-value=9.3e-07 Score=79.35 Aligned_cols=51 Identities=8% Similarity=0.156 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC----CCCCCCCcccccCCCCCCCeeee
Q psy13773 209 DADIRKYEMFAQTLQQSRGFGTNFRFPSNPN----QSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 209 w~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~----~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
|.||.|++++|+.+.+.+.+ +. ++..+. ..-+...++|||||||||||+|.
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~--~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAAL--LL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHH--HH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHH
T ss_pred HHHccChHHHHHHHHHHHHH--HH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHH
Confidence 56899999999999999887 43 333221 11133457999999999999886
No 165
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.67 E-value=2.1e-05 Score=65.38 Aligned_cols=38 Identities=32% Similarity=0.441 Sum_probs=29.7
Q ss_pred cCCCCCCcEEEEEcCCCChHHHHHHHHHHh-hcCCeecc
Q psy13773 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANE-CQANFISV 52 (299)
Q Consensus 15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~-l~~~~i~i 52 (299)
++....+..|+|+|++||||||+++.|+.. ++..++..
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 345556778999999999999999999998 66555544
No 166
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.66 E-value=2.9e-05 Score=63.67 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l 57 (299)
.++..++|+|++||||||++++|++.++. +.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~--~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHA--AFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC--EEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCc--EEEeCccc
Confidence 35778999999999999999999998754 44444443
No 167
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.66 E-value=2.1e-05 Score=67.05 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=27.6
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
-++.+++.++|+||||||||||+++|++..
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999999854
No 168
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.66 E-value=2.5e-05 Score=65.95 Aligned_cols=28 Identities=36% Similarity=0.572 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
++++.++|+||||+|||||+++|++...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4678899999999999999999999753
No 169
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.64 E-value=3.2e-05 Score=64.14 Aligned_cols=35 Identities=31% Similarity=0.456 Sum_probs=29.4
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
+..+..|+|.|++||||||+++.|+..++..++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 35677899999999999999999999887665543
No 170
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.64 E-value=3e-05 Score=69.34 Aligned_cols=37 Identities=38% Similarity=0.531 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchhh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPEL 57 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~l 57 (299)
...++|+||+|||||+++++|+..+. ..++.++|..+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 45799999999999999999999874 34777777665
No 171
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.64 E-value=2.8e-05 Score=64.76 Aligned_cols=26 Identities=38% Similarity=0.625 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
++.++|+||||||||||+++|++.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45789999999999999999999775
No 172
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.63 E-value=3e-05 Score=65.07 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.5
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
.+.++..++|+||+||||||+++.|++.+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45678999999999999999999999987
No 173
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.62 E-value=3.1e-05 Score=63.96 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVK 53 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~ 53 (299)
+..|+|+|++||||||+++.|+..++..++..|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 567999999999999999999999987776554
No 174
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.62 E-value=3.5e-05 Score=64.64 Aligned_cols=36 Identities=44% Similarity=0.577 Sum_probs=29.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchhh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPEL 57 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~l 57 (299)
..++|+||+|+|||+|+++++..+. ..++.+++.++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 7899999999999999999999774 34555665544
No 175
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.61 E-value=3e-05 Score=70.12 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=35.0
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l 57 (299)
.++.+.+++.++|+|||||||||+++.||+.+. .+.+.+.+.++
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 138 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 456678899999999999999999999999775 34455555544
No 176
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.59 E-value=3.5e-05 Score=64.11 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
.++|+||||||||||+++|++.++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999886
No 177
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.59 E-value=3.8e-05 Score=66.16 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=25.6
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
..++++.++|+||||||||||+++|++...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 457899999999999999999999999875
No 178
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.58 E-value=3.6e-05 Score=65.04 Aligned_cols=28 Identities=29% Similarity=0.246 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
.++..++|.||+|||||||+++|++.++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5778999999999999999999999877
No 179
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.58 E-value=6.3e-05 Score=71.64 Aligned_cols=49 Identities=27% Similarity=0.544 Sum_probs=38.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhhccccccHHHHHHHHHHHH
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVT 77 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a~ 77 (299)
..++|+||+||||||++++|+..++..++.+++... ....++.+|..+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-------~~~~ir~~~~~a~ 99 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-------GVKEIREAIERAR 99 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-------CHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-------CHHHHHHHHHHHH
Confidence 579999999999999999999999988888875432 2345666666554
No 180
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.57 E-value=1.1e-05 Score=68.92 Aligned_cols=34 Identities=35% Similarity=0.380 Sum_probs=28.5
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
+.+++.++|+||||||||||+++|++. .+....|
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 578999999999999999999999998 5433333
No 181
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.57 E-value=7.5e-05 Score=81.08 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=47.8
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHHhhcCC-----eecccc--hhhh--------hccccc----cHHHHHHHHHHHHH
Q psy13773 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQAN-----FISVKG--PELL--------TMWFGE----SEANVRDIFDKVTM 78 (299)
Q Consensus 18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~-----~i~i~~--~~l~--------~~~~g~----~~~~i~~~f~~a~~ 78 (299)
++.++.++||||+|||||+|+++++.+...+ |+.+.. .++. ++|+++ .++.++.+|..|+.
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~ 1158 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1158 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHh
Confidence 5677889999999999999999999876544 454443 2333 567777 79999999988875
Q ss_pred H
Q psy13773 79 E 79 (299)
Q Consensus 79 ~ 79 (299)
.
T Consensus 1159 ~ 1159 (1706)
T 3cmw_A 1159 G 1159 (1706)
T ss_dssp T
T ss_pred c
Confidence 4
No 182
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.56 E-value=1.9e-05 Score=69.45 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=33.0
Q ss_pred hcCCCCC---CcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 14 LKFGMQP---SRGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 14 ~sl~i~~---~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
+++.+.+ ++.+.|+|++||||||+++.|+..++..++..
T Consensus 38 ~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 38 KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 4556677 89999999999999999999999998766543
No 183
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.56 E-value=4.5e-05 Score=71.05 Aligned_cols=37 Identities=32% Similarity=0.512 Sum_probs=31.7
Q ss_pred cCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFIS 51 (299)
Q Consensus 15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~ 51 (299)
++++++++.++|+||||||||||+++|++..+...+.
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 4678999999999999999999999999987654443
No 184
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.55 E-value=7.7e-05 Score=84.96 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=42.4
Q ss_pred eeeccCcChhhhhcCC--CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh
Q psy13773 2 ISTYPVEHPEKFLKFG--MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 58 (299)
Q Consensus 2 ~v~~pl~~p~~~~sl~--i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~ 58 (299)
+|+.||+. .-|..+. +....+.++.||.|||||.+++.||..++...+.++|++-.
T Consensus 584 LViTPLTd-rcy~tl~~Al~~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~ 641 (3245)
T 3vkg_A 584 LVQTPLTD-RCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF 641 (3245)
T ss_dssp CCCCHHHH-HHHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC
T ss_pred CcCChHHH-HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC
Confidence 45666654 2333332 34566788999999999999999999999999999987643
No 185
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.55 E-value=4.2e-05 Score=73.42 Aligned_cols=44 Identities=11% Similarity=0.180 Sum_probs=36.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELL 58 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l~ 58 (299)
++|.+.+ +.++|+||||||||||+++|++.+.+ +.+.+++.++.
T Consensus 23 vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 23 RTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred eEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 5677888 99999999999999999999998764 55667666553
No 186
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.54 E-value=5.4e-05 Score=62.35 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=31.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL 57 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l 57 (299)
.++..++|.|++||||||+++.|+..+ +..++.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 357889999999999999999999987 666776665544
No 187
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.54 E-value=5.9e-05 Score=61.19 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFISVK 53 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~ 53 (299)
.|+|.|++||||||+++.|+..++..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999987766554
No 188
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.54 E-value=4.2e-05 Score=63.53 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l 57 (299)
++.++|+|||||||||++++|++.. .+.+.+++.++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-DNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-SSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-CCeEEEcccch
Confidence 4578999999999999999999844 23455665554
No 189
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.53 E-value=5.1e-05 Score=62.83 Aligned_cols=27 Identities=11% Similarity=0.374 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
.++.++|+||||||||||+++|++...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 578899999999999999999999764
No 190
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.53 E-value=5.7e-05 Score=66.25 Aligned_cols=39 Identities=31% Similarity=0.424 Sum_probs=33.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchhhh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELL 58 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~l~ 58 (299)
.+..++|+||+|||||+++++|+.... ..++.++|..+.
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC
Confidence 456899999999999999999999775 468889988763
No 191
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.51 E-value=5.4e-05 Score=66.29 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=33.2
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57 (299)
Q Consensus 18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l 57 (299)
...+..++|.|+|||||||+++.|+..++.+.+.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4567889999999999999999999998766666666554
No 192
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.51 E-value=4.1e-05 Score=69.42 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKG 54 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~ 54 (299)
+..++|+||||||||+++++++..++..++.++|
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEec
Confidence 5689999999999999999999998877776665
No 193
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.51 E-value=4.3e-05 Score=68.70 Aligned_cols=38 Identities=45% Similarity=0.795 Sum_probs=33.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l 57 (299)
.+..++|+||+|||||+++++++..++..++.++|..+
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 74 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI 74 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTC
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 45689999999999999999999999888888877654
No 194
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.50 E-value=4.9e-05 Score=70.34 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=35.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CCeecccchhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPEL 57 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~~i~i~~~~l 57 (299)
.++.+.+++.++|+|||||||||+++.||+.+. .+.+.+.+.++
T Consensus 150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp CCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 456778899999999999999999999999775 34455555544
No 195
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.50 E-value=9e-05 Score=68.25 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=31.4
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFI 50 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i 50 (299)
+.+.+|+.++|+||||||||||+++|++.......
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 77889999999999999999999999998876543
No 196
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.50 E-value=5.7e-05 Score=62.22 Aligned_cols=35 Identities=34% Similarity=0.564 Sum_probs=29.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVK 53 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~ 53 (299)
..+..|+|+|++||||||+++.|+..++..++..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 35677999999999999999999999886665543
No 197
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.50 E-value=5.8e-05 Score=69.77 Aligned_cols=38 Identities=24% Similarity=0.408 Sum_probs=33.1
Q ss_pred hhhcCCCCC--CcEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773 12 KFLKFGMQP--SRGVLFYGPPGCGKTLLAKAIANECQANF 49 (299)
Q Consensus 12 ~~~sl~i~~--~~~vLL~Gp~GsGKTtLlr~La~~l~~~~ 49 (299)
.++++.+.+ ++.++|+||||||||||+++|++.+....
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 357778888 99999999999999999999999877544
No 198
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.49 E-value=6.9e-05 Score=62.96 Aligned_cols=31 Identities=32% Similarity=0.619 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFIS 51 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~ 51 (299)
+..|+|.|++||||||+++.|+..++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4679999999999999999999998755544
No 199
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.49 E-value=6.5e-05 Score=64.52 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=27.0
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
-++.++..++|+||||+|||||++.++..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999999999999984
No 200
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.49 E-value=7.7e-06 Score=74.44 Aligned_cols=45 Identities=18% Similarity=0.008 Sum_probs=33.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 204 RRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 204 ~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.+..+|++|-|.+.+++.+...+.. + ...++|||||||||||+|.
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~--~------------~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVD--P------------GIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHC--G------------GGCCEEEECCGGGCTTHHH
T ss_pred CCCCCchhccChHHHHHHHHHHhhC--C------------CCceEEEECCCCccHHHHH
Confidence 3558899999988888876555433 2 2235999999999999874
No 201
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.49 E-value=6.5e-06 Score=79.80 Aligned_cols=60 Identities=7% Similarity=-0.129 Sum_probs=44.2
Q ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCCCCC----CCCcccccCCCCCCCeeee
Q psy13773 200 MRFARRSVNDADIRKYEMFAQTLQQSRG-FGTNFRFPSNPNQSQS----GGPNSAPANESGTGGILLM 262 (299)
Q Consensus 200 L~~~~PsVsw~DIggL~~vk~~i~~ti~-~~~Plk~Pe~~~~~~~----k~s~~l~~g~~gtg~~ll~ 262 (299)
.++++| .+|+||.|.+..++.+.+.+. | +..+|..|..... ...++|||||||||||+|.
T Consensus 30 ~ekyrP-~~~~dliG~~~~~~~L~~~l~~~--~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 30 TVKYAP-TNLQQVCGNKGSVMKLKNWLANW--ENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp HHHTCC-SSGGGCCSCHHHHHHHHHHHHTH--HHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHH
T ss_pred ccccCC-CCHHHhcCCHHHHHHHHHHHHHh--HhhchhhccccCccCCCCCcEEEEECCCCCCHHHHH
Confidence 456788 689999999999999888765 4 4444455543222 3468999999999999873
No 202
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.48 E-value=9.4e-05 Score=62.48 Aligned_cols=38 Identities=29% Similarity=0.322 Sum_probs=31.6
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKG 54 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~ 54 (299)
++.++..++|+||||+|||||++.++...+...++++.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 68999999999999999999999999844445555553
No 203
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.47 E-value=7.6e-05 Score=64.86 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQAN 48 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~ 48 (299)
.+..++|+|||||||||++++|+..++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 46899999999999999999999877643
No 204
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.46 E-value=7.2e-05 Score=67.89 Aligned_cols=30 Identities=13% Similarity=0.029 Sum_probs=27.4
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
+.++..++|.||||||||||+++|++.+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 678999999999999999999999997753
No 205
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.46 E-value=5.8e-05 Score=72.51 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=34.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPE 56 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~ 56 (299)
++|.+..+..++|+|+||||||||+++|++.+.. +.+.+.+.+
T Consensus 286 Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D 330 (503)
T 2yhs_A 286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330 (503)
T ss_dssp CCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred ceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCc
Confidence 4567788999999999999999999999997753 445554433
No 206
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.46 E-value=7e-05 Score=66.89 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=29.9
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
+++++.+++.++|.||||+|||||+++|+..+.
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999999999999764
No 207
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.44 E-value=9.4e-05 Score=62.75 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
.+++.++|+||+|+||||+++.|+..+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 46889999999999999999999998754
No 208
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.44 E-value=3.1e-05 Score=71.65 Aligned_cols=42 Identities=33% Similarity=0.518 Sum_probs=35.0
Q ss_pred hhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceeccc
Q psy13773 12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVK 53 (299)
Q Consensus 12 ~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~ 53 (299)
.+.++.+.+++.++|.||+|||||||+++|++.+.. +.+.++
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 346778899999999999999999999999998764 445554
No 209
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.44 E-value=8.3e-05 Score=66.58 Aligned_cols=39 Identities=36% Similarity=0.537 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l 57 (299)
..+..++|.|||||||||+++.|+..+....+.|++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 457789999999999999999999987555666765444
No 210
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.43 E-value=7.1e-05 Score=68.77 Aligned_cols=38 Identities=34% Similarity=0.389 Sum_probs=32.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhh-----------cCCeecccchhh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANEC-----------QANFISVKGPEL 57 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l-----------~~~~i~i~~~~l 57 (299)
.+..++|+||+|+|||+++++++..+ +..+++++|...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 92 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV 92 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC
Confidence 45689999999999999999999987 677788887654
No 211
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.43 E-value=6.1e-05 Score=62.17 Aligned_cols=32 Identities=38% Similarity=0.600 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFIS 51 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~ 51 (299)
.+..|+|.|++||||||+++.|+..++..++.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 45679999999999999999999988754443
No 212
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.43 E-value=0.0001 Score=62.50 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=26.8
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
++.+++.++|+||||+|||||+++++...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999999754
No 213
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.43 E-value=6.6e-05 Score=68.64 Aligned_cols=38 Identities=18% Similarity=0.419 Sum_probs=32.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhh------cCCeecccchh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANEC------QANFISVKGPE 56 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l------~~~~i~i~~~~ 56 (299)
..+..++|+||+|+|||||++++++.+ +..+++++|..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 346789999999999999999999987 66778888754
No 214
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.42 E-value=9.3e-05 Score=64.93 Aligned_cols=32 Identities=34% Similarity=0.421 Sum_probs=27.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFISVKG 54 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~ 54 (299)
.++|+||+||||||+++.||..++..++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 58899999999999999999998877766554
No 215
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.42 E-value=5.8e-05 Score=69.12 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=32.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhh---------cCCeecccchhh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPEL 57 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l---------~~~~i~i~~~~l 57 (299)
..+..++|+||+|+|||+++++++..+ +..+++++|...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 456789999999999999999999987 566778887653
No 216
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.42 E-value=5.1e-05 Score=72.56 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=33.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc--CC-e-ecccc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ--AN-F-ISVKG 54 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~--~~-~-i~i~~ 54 (299)
+++.+.+++.++|+||+|||||||+|+|++... .+ . +.+++
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence 567788999999999999999999999999764 23 3 55554
No 217
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.42 E-value=9.7e-05 Score=70.18 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=31.3
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFI 50 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i 50 (299)
|.+.+++.++|+||||||||||+++|++.......
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G 186 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVI 186 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence 77889999999999999999999999998775543
No 218
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.41 E-value=6e-05 Score=69.72 Aligned_cols=37 Identities=30% Similarity=0.380 Sum_probs=30.3
Q ss_pred hhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 10 PEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 10 p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
|+.+.++...++..++|.||+||||||++++|++.+.
T Consensus 112 ~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 112 GEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 4445555556778999999999999999999999765
No 219
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.40 E-value=7.1e-05 Score=61.40 Aligned_cols=30 Identities=33% Similarity=0.603 Sum_probs=26.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
.++|.|++||||||+++.||..++..++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999988665543
No 220
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.39 E-value=7.6e-05 Score=69.36 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=31.6
Q ss_pred hhhhhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 10 PEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 10 p~~~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
|+.+..+.+.++..++|+||+||||||++++|++.+.
T Consensus 125 ~~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 125 PDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp CSSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4455666678899999999999999999999999764
No 221
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.39 E-value=8.7e-05 Score=63.29 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=26.9
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQAN 48 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~ 48 (299)
+++...+++|+|||||||||++.+||+.+.-.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~ 85 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA 85 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35556689999999999999999999987533
No 222
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.39 E-value=1.4e-05 Score=71.18 Aligned_cols=62 Identities=10% Similarity=-0.009 Sum_probs=42.7
Q ss_pred ccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC--CCCCCcccccCCCCCCCeeee
Q psy13773 191 ITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQS--QSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 191 it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~--~~k~s~~l~~g~~gtg~~ll~ 262 (299)
++++++.+.+... |-|.+++++.+...+.. +.+++.+.... -....++|||||||||||.|.
T Consensus 4 ~~~~~l~~~l~~~--------i~G~~~~~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 4 MTPREIVSELDQH--------IIGQADAKRAVAIALRN--RWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCHHHHHHHHHTT--------CCSCHHHHHHHHHHHHH--HHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHH
T ss_pred CCHHHHHHHHhhh--------cCChHHHHHHHHHHHHH--HHhhhhhcccccccCCCceEEEECCCCCCHHHHH
Confidence 5778888888643 44777788888877765 55555543211 123468999999999999874
No 223
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.39 E-value=0.0001 Score=64.50 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANF 49 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~ 49 (299)
.++..|.|.||+||||||+++.|+..++..+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 4678899999999999999999998877543
No 224
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.37 E-value=8.7e-05 Score=61.23 Aligned_cols=32 Identities=19% Similarity=0.466 Sum_probs=27.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANECQANFISVK 53 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~ 53 (299)
..|+|.|++||||||+++.|+..++..++..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35899999999999999999999987766543
No 225
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.37 E-value=9.6e-05 Score=61.33 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=28.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
..+..|+|.|++||||||+++.|+..++..++..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 3567899999999999999999999887665543
No 226
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.37 E-value=0.00014 Score=61.18 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=23.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANECQANFI 50 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i 50 (299)
..++|.|++||||||+++.|++ ++..++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~i 30 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLV 30 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCccc
Confidence 3689999999999999999998 554443
No 227
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.36 E-value=0.00012 Score=62.34 Aligned_cols=30 Identities=33% Similarity=0.506 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFI 50 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i 50 (299)
+..++|.|++||||||+++.|++.++..++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 457999999999999999999998875443
No 228
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.36 E-value=0.00012 Score=61.39 Aligned_cols=33 Identities=36% Similarity=0.492 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
.+..|+|.|++||||||+++.|+..++..++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 456799999999999999999999988665544
No 229
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.36 E-value=0.0001 Score=62.14 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=28.0
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhh-cCCee
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANEC-QANFI 50 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l-~~~~i 50 (299)
.+.++..++|.|++||||||+++.|++.+ +..++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 35677899999999999999999999976 44333
No 230
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.35 E-value=0.0001 Score=62.04 Aligned_cols=34 Identities=35% Similarity=0.625 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhc-CCeecccch
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGP 55 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~i~~~ 55 (299)
++.++|+||||||||||++.|++.+. .+ +.+++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~ 35 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGF 35 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCC-EEEcCE
Confidence 45789999999999999999999763 33 555443
No 231
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.34 E-value=1.3e-05 Score=78.14 Aligned_cols=48 Identities=19% Similarity=0.139 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 207 VNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 207 Vsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
+-|+|+.|++++++.+.+.+.+ +-.+++. +...+|||||||||||+|.
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l--~~~~~~~------~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAV--QKLTKSL------KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHH--HHHSSSC------CSCEEEEESSSSSSHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHH--HHhcccC------CCCEEEEECCCCCCHHHHH
Confidence 5579999999999999998877 5545444 5668999999999999874
No 232
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.34 E-value=0.0001 Score=60.69 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=26.2
Q ss_pred cCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
++.+.++ ..+|+|||||||||++++|+..++.
T Consensus 21 ~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 21 VIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3445555 7899999999999999999997764
No 233
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.34 E-value=0.0001 Score=60.89 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFIS 51 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~ 51 (299)
+..|+|.|++||||||+++.|+..++..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 5679999999999999999999988765543
No 234
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.34 E-value=3.3e-05 Score=70.65 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=34.2
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccch
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGP 55 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~ 55 (299)
.++.+.+++.++|.||+|||||||+++|++.+.. +.+.+++.
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT 207 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESS
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCe
Confidence 4566788999999999999999999999998764 45555543
No 235
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.33 E-value=0.0001 Score=60.82 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
+..|+|.|++||||||+++.|+..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 236
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.33 E-value=0.00015 Score=62.35 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=32.0
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhh
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 58 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~ 58 (299)
-.+..++.|+|+|||||||+|.++.|+..++... |+..++.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 3456788999999999999999999999886544 4444443
No 237
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.33 E-value=0.00012 Score=59.43 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVK 53 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~ 53 (299)
-..++|.|++||||||+++.|+..++..++..|
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 357999999999999999999999988776543
No 238
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.32 E-value=0.00011 Score=71.39 Aligned_cols=43 Identities=26% Similarity=0.314 Sum_probs=34.9
Q ss_pred hcC-CCCCCcEEEEEcCCCChHHHHHHH--HHHhhc--CCeecccchh
Q psy13773 14 LKF-GMQPSRGVLFYGPPGCGKTLLAKA--IANECQ--ANFISVKGPE 56 (299)
Q Consensus 14 ~sl-~i~~~~~vLL~Gp~GsGKTtLlr~--La~~l~--~~~i~i~~~~ 56 (299)
+++ ++.+++.++|+||||||||||+++ +++... .+.+++++.+
T Consensus 31 i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 31 ISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp HTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred hcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 567 789999999999999999999999 567553 5667777654
No 239
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.32 E-value=0.0001 Score=66.52 Aligned_cols=37 Identities=32% Similarity=0.541 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 56 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~ 56 (299)
.+..++++||+|+|||+++++++..++..++++++.+
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence 3457888899999999999999999998888888765
No 240
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.32 E-value=0.00013 Score=66.93 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=29.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh----cCCeecccchhh
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPEL 57 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l----~~~~i~i~~~~l 57 (299)
.++|+||+|+||||++++++..+ +..+++++|...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 89999999999999999999988 345677776543
No 241
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.31 E-value=0.00011 Score=67.57 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=29.5
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
..++++++..++|+||||||||||++.++...
T Consensus 124 L~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 124 LGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999999999976
No 242
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.30 E-value=0.0001 Score=60.18 Aligned_cols=27 Identities=26% Similarity=0.360 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHH-hhcC
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIAN-ECQA 47 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~-~l~~ 47 (299)
+..|+|.|+|||||||+++.|+. .++.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~ 29 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGF 29 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCc
Confidence 35789999999999999999998 4443
No 243
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.29 E-value=0.00013 Score=62.09 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
++..|+|.|++||||||+++.|+..++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 456799999999999999999999988655443
No 244
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.29 E-value=0.00014 Score=65.75 Aligned_cols=38 Identities=24% Similarity=0.228 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL 57 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l 57 (299)
+++.++|+||+||||||++++||+.+.. +.+.+.+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 5789999999999999999999997764 4455555554
No 245
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.29 E-value=2.5e-05 Score=69.32 Aligned_cols=21 Identities=10% Similarity=-0.149 Sum_probs=18.8
Q ss_pred CCCCcccccCCCCCCCeeeec
Q psy13773 243 SGGPNSAPANESGTGGILLMF 263 (299)
Q Consensus 243 ~k~s~~l~~g~~gtg~~ll~~ 263 (299)
.|+.+++||||||||||++..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 778999999999999998753
No 246
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.29 E-value=1.7e-05 Score=72.14 Aligned_cols=52 Identities=13% Similarity=-0.064 Sum_probs=39.4
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.+++| .+|+|+-|.+.+++.+.+.+.. ..... ..-+++|+|||||||||+|.
T Consensus 21 ~~~~p-~~~~~iiG~~~~~~~l~~~l~~--~~~~~-------~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 21 TSLRP-SNFDGYIGQESIKKNLNVFIAA--AKKRN-------ECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp --CCC-CSGGGCCSCHHHHHHHHHHHHH--HHHTT-------SCCCCEEEECSTTSSHHHHH
T ss_pred hccCC-CCHHHhCChHHHHHHHHHHHHH--HHhcC-------CCCCeEEEECcCCCCHHHHH
Confidence 45678 5899999999999999998876 32211 22346999999999999875
No 247
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.28 E-value=0.00011 Score=61.54 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=24.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
.|+|.|++||||||+++.|++ ++..++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 589999999999999999999 76555443
No 248
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.27 E-value=0.00017 Score=66.03 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=29.1
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
+++.+..+..+.|+|+||+|||||+++|++.+.
T Consensus 48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 456678899999999999999999999998664
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.27 E-value=0.00018 Score=60.97 Aligned_cols=32 Identities=16% Similarity=0.401 Sum_probs=25.8
Q ss_pred cCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
++....++.++|+||+|+|||||+++|++...
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34445788999999999999999999998764
No 250
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.26 E-value=0.00013 Score=58.85 Aligned_cols=30 Identities=37% Similarity=0.566 Sum_probs=24.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
..|+|.|++||||||+++.| ..++..++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 36889999999999999999 7776665543
No 251
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.26 E-value=0.00014 Score=62.39 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=27.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
..+..|+|.|++||||||+++.|+..++..++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3457899999999999999999999887655543
No 252
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.25 E-value=0.00011 Score=69.41 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=28.2
Q ss_pred hhcCCCCCCcE--EEEEcCCCChHHHHHHHHHHh
Q psy13773 13 FLKFGMQPSRG--VLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 13 ~~sl~i~~~~~--vLL~Gp~GsGKTtLlr~La~~ 44 (299)
-+++.+.+|.. ++|+||||+|||||+++|++.
T Consensus 32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 35678899999 999999999999999999986
No 253
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.25 E-value=3.8e-05 Score=64.28 Aligned_cols=47 Identities=15% Similarity=0.028 Sum_probs=35.1
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
++++| ..|+++-|-++..+.+.+.+.- . +.+.+++|||||||||.|.
T Consensus 9 ~~~~p-~~~~~~~g~~~~~~~l~~~l~~--~------------~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 9 EKYRP-RTLDEVVGQDEVIQRLKGYVER--K------------NIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp HHTSC-SSGGGCCSCHHHHHHHHHHHHT--T------------CCCCEEEECSTTSSHHHHH
T ss_pred HhcCC-CCHHHHcCcHHHHHHHHHHHhC--C------------CCCeEEEECCCCCCHHHHH
Confidence 34555 6677777888888888887754 1 2345999999999999874
No 254
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.25 E-value=0.00017 Score=59.38 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
.+..|+|.|++||||||+++.|+..++..++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 346799999999999999999999887555443
No 255
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.25 E-value=0.00014 Score=60.41 Aligned_cols=32 Identities=19% Similarity=0.377 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFIS 51 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~ 51 (299)
.+..|+|.|++||||||+++.|+..++..++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 45689999999999999999999998755443
No 256
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.25 E-value=2e-05 Score=71.70 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=37.1
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.+++| .+|+||-|.+++++.+...+.-+ +-+.+|||||||||||+|.
T Consensus 29 ~k~~p-~~~~~i~g~~~~~~~l~~~l~~~--------------~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 29 EKYRP-KNLDEVTAQDHAVTVLKKTLKSA--------------NLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHTCC-SSTTTCCSCCTTHHHHHHHTTCT--------------TCCCEEEECSTTSSHHHHH
T ss_pred HhcCC-CCHHHhhCCHHHHHHHHHHHhcC--------------CCCEEEEECCCCCCHHHHH
Confidence 45677 67899999999999998887651 1235999999999999874
No 257
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.23 E-value=3.1e-05 Score=66.03 Aligned_cols=21 Identities=10% Similarity=0.006 Sum_probs=18.5
Q ss_pred CCCCCCcccccCCCCCCCeee
Q psy13773 241 SQSGGPNSAPANESGTGGILL 261 (299)
Q Consensus 241 ~~~k~s~~l~~g~~gtg~~ll 261 (299)
++.|+.++|+|||||||||.+
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~ 74 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYF 74 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHH
T ss_pred cCCcccEEEEECCCCCCHHHH
Confidence 467889999999999999954
No 258
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.22 E-value=0.00021 Score=64.55 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
..+..++|.||+|||||||+++|++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6788999999999999999999999865
No 259
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.22 E-value=0.00014 Score=59.04 Aligned_cols=31 Identities=23% Similarity=0.562 Sum_probs=26.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
..|+|.|++||||||+++.|+..++..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 3589999999999999999999988665543
No 260
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.22 E-value=1.1e-05 Score=74.09 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=36.1
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 202 FARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 202 ~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.++|..+|+++-|.+..++.+...+.+ ++. +.....++|||||||||||+|.
T Consensus 36 ~~~p~~~~~~ivG~~~~~~~l~~l~~~---~~~------~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 36 ALEPRQASQGMVGQLAARRAAGVVLEM---IRE------GKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TSCBCSEETTEESCHHHHHHHHHHHHH---HHT------TCCTTCEEEEEESTTSSHHHHH
T ss_pred ccCcCcchhhccChHHHHHHHHHHHHH---HHc------CCCCCCEEEEECCCCCCHHHHH
Confidence 456777799998888888775444433 111 1111258999999999999875
No 261
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.22 E-value=0.00015 Score=61.91 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFIS 51 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~ 51 (299)
.+..|+|.|++||||||+++.|+..++..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 45679999999999999999999998864443
No 262
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.21 E-value=0.00016 Score=59.36 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFI 50 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i 50 (299)
.+..|+|.|++||||||+++.|+..++..++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 3567999999999999999999999887665
No 263
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.21 E-value=7.9e-05 Score=77.06 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=32.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFI 50 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i 50 (299)
++|.+.+++.++|+||||||||||+|+|++.+.+...
T Consensus 692 VSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG 728 (986)
T 2iw3_A 692 INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728 (986)
T ss_dssp EEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 5677899999999999999999999999998765443
No 264
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.20 E-value=0.0002 Score=60.35 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=26.1
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
...++..++|+|||||||||+++.|+..+.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346788999999999999999999999774
No 265
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.20 E-value=0.0002 Score=64.68 Aligned_cols=37 Identities=30% Similarity=0.520 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhc----CCeecccchhh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPEL 57 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~----~~~i~i~~~~l 57 (299)
+..++|+||+|+|||+|+++|+..+. ..++++.+.++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 67999999999999999999999765 34445554433
No 266
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.20 E-value=3.7e-05 Score=68.73 Aligned_cols=46 Identities=15% Similarity=0.021 Sum_probs=35.5
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 202 FARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 202 ~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
+++| .+|+|+-|.+++++.+.+.+.. .+.+.+|||||||||||.+.
T Consensus 10 k~~p-~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 10 KYRP-RTLDEVVGQDEVIQRLKGYVER--------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTSC-SSGGGSCSCHHHHHHHHTTTTT--------------TCCCCEEEESSSSSSHHHHH
T ss_pred hcCC-CCHHHHhCCHHHHHHHHHHHhC--------------CCCCeEEEECcCCcCHHHHH
Confidence 4566 6788888988888888877543 23345999999999999764
No 267
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.19 E-value=0.00018 Score=64.79 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=33.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhhh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL 58 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l~ 58 (299)
..+..++|+|++|||||+++++|+... +..++.++|..+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~ 65 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN 65 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC
Confidence 346689999999999999999999965 3568888887653
No 268
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.19 E-value=0.00022 Score=59.71 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
..+..|+|.|++||||||+++.|+..++..++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 3456799999999999999999999887655443
No 269
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.19 E-value=0.00026 Score=59.55 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
....+..++|.|++||||||++++|++.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456788999999999999999999999763
No 270
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.19 E-value=0.00021 Score=59.68 Aligned_cols=24 Identities=50% Similarity=0.773 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
..++|+||+|+|||+++++++..+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 359999999999999999999876
No 271
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.18 E-value=5.6e-05 Score=67.81 Aligned_cols=22 Identities=9% Similarity=-0.136 Sum_probs=18.4
Q ss_pred CCCCCCcccccCCCCCCCeeee
Q psy13773 241 SQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 241 ~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
+.+...|+|||||||||||+|-
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHH
Confidence 4555679999999999999874
No 272
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.18 E-value=0.00018 Score=63.81 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
.++|+||||+|||||+++|++...+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5889999999999999999997654
No 273
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.17 E-value=0.00015 Score=66.80 Aligned_cols=35 Identities=20% Similarity=0.491 Sum_probs=28.5
Q ss_pred CCCCCcE--EEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773 17 GMQPSRG--VLFYGPPGCGKTLLAKAIANECQANFIS 51 (299)
Q Consensus 17 ~i~~~~~--vLL~Gp~GsGKTtLlr~La~~l~~~~i~ 51 (299)
.+..+.. ++|+|++||||||++++||..++..++.
T Consensus 18 ~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 18 RIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp TTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 3445544 9999999999999999999998876644
No 274
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.16 E-value=0.00023 Score=57.59 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=26.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
.|+|.|++||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999988666543
No 275
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.16 E-value=0.00018 Score=65.65 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL 57 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l 57 (299)
.++..++|+|||||||||+++.||+.+.. +.+.+.+.++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~ 167 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDT 167 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecc
Confidence 57899999999999999999999997653 3455555554
No 276
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.16 E-value=0.00022 Score=62.01 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=28.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
.++..|+|.||+||||||+++.|+..++...+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4677899999999999999999999886554433
No 277
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.16 E-value=0.00029 Score=59.62 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=32.6
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhc----CCeecccchhh
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPEL 57 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~----~~~i~i~~~~l 57 (299)
.+.++..++|.|++||||||+++.|+..++ ...+.+++..+
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 356788999999999999999999999775 23666665444
No 278
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.15 E-value=0.00023 Score=60.26 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=25.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
.|+|.|++||||||+++.|+..++...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999887665544
No 279
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.14 E-value=0.00021 Score=60.51 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=25.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
.|+|.|++||||||+++.|+..++...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999887665544
No 280
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.14 E-value=0.00029 Score=71.26 Aligned_cols=40 Identities=33% Similarity=0.561 Sum_probs=34.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhhhhccc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWF 62 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l~~~~~ 62 (299)
.++|+||+|||||+++++|+..+ +..++.++|.++...+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 69999999999999999999987 46789999988876543
No 281
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.14 E-value=0.00011 Score=71.22 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=31.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceeccc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVK 53 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~ 53 (299)
.++.+..+..++|.||+||||||++++|++.+.. +.+.+.
T Consensus 253 l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitie 294 (511)
T 2oap_1 253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp HHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence 3445678889999999999999999999998764 344443
No 282
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.12 E-value=0.00025 Score=71.65 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=34.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhhcCCeecccchhhhh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 59 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~l~~ 59 (299)
..++|+||+|||||+++++++..++..++.++|.++..
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~ 526 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME 526 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcc
Confidence 37999999999999999999999998899999887754
No 283
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.12 E-value=0.00023 Score=59.79 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=26.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANF 49 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~ 49 (299)
..+..|+|.|++||||||+++.|+..++...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4577899999999999999999999876543
No 284
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.11 E-value=0.0001 Score=69.44 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
.++|+||||+|||||+|+|++...
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 999999999999999999999654
No 285
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.11 E-value=0.00039 Score=63.24 Aligned_cols=38 Identities=21% Similarity=0.082 Sum_probs=30.1
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVK 53 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~ 53 (299)
.++.++..++|+||||||||+|+..++...+....+++
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs 155 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYAT 155 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEE
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEE
Confidence 46777888999999999999999999987544434444
No 286
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.11 E-value=4.5e-05 Score=68.38 Aligned_cols=47 Identities=19% Similarity=0.082 Sum_probs=36.6
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
++++| .+|+|+-|.+++++.+...+.- .+-+.+|+|||||||||.+.
T Consensus 17 ~k~~p-~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 17 EKYRP-QRLDDIVGQEHIVKRLKHYVKT--------------GSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp HHTCC-CSTTTCCSCHHHHHHHHHHHHH--------------TCCCEEEEESCTTSSHHHHH
T ss_pred hccCC-CCHHHhhCCHHHHHHHHHHHHc--------------CCCCeEEEECcCCCCHHHHH
Confidence 34667 6788888888899988877654 12346999999999999874
No 287
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.10 E-value=0.00034 Score=58.40 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhh-cCCeec
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANEC-QANFIS 51 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l-~~~~i~ 51 (299)
.+..|.|.|++||||||+++.|+..+ +..++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~ 35 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKY 35 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEE
Confidence 46789999999999999999999987 344443
No 288
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.10 E-value=0.00025 Score=62.83 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=27.9
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
++.+++.++|+||||||||||++.++..+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 6889999999999999999999999986543
No 289
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.09 E-value=0.00015 Score=66.72 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCC---CCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 191 ITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFR---FPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 191 it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk---~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.+++++.+.|.+. |-|.+.+++.+...+.. ..+ .+......-....++|||||||||||++-
T Consensus 4 ~~~~~l~~~l~~~--------i~G~~~~~~~l~~~i~~--~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 4 PTPHEIRNHLDDY--------VIGQEQAKKVLAVAVYN--HYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCHHHHHHHHHHH--------CCSCHHHHHHHHHHHHH--HHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHH
T ss_pred CCHHHHHHHHHhh--------ccCHHHHHHHHHHHHHH--HHhhhccccccccccCCCCeEEEECCCCCCHHHHH
Confidence 4566777777543 45677788887777632 111 11111122234678999999999999873
No 290
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.08 E-value=0.00041 Score=60.93 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHh---hcCCeecccchhh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANE---CQANFISVKGPEL 57 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~---l~~~~i~i~~~~l 57 (299)
.+..|+|.|++||||||+++.|+.. .+..++.++...+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 3567999999999999999999997 4555554454444
No 291
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.08 E-value=0.00025 Score=60.43 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
+..|+|.|++||||||+++.|+..++..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 45789999999999999999999987665544
No 292
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.07 E-value=0.00031 Score=60.45 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
.+..|+|.|++||||||+++.|+..++..++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 456799999999999999999999988655443
No 293
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.06 E-value=0.00041 Score=57.34 Aligned_cols=29 Identities=34% Similarity=0.474 Sum_probs=26.1
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
..++..++|.|++||||||+++.|+..+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35678899999999999999999999875
No 294
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.06 E-value=0.00035 Score=58.16 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFI 50 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i 50 (299)
.+..|+|.|++||||||+++.|+.. +..++
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~i 36 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVL 36 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEE
Confidence 4567999999999999999999998 54443
No 295
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.04 E-value=0.00018 Score=59.52 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=26.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhhcC-----Ceecccchhh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPEL 57 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l~~-----~~i~i~~~~l 57 (299)
+.+.|+|++|||||||++.|++.+.. +.+.+++.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCccc
Confidence 57899999999999999999997753 4566666554
No 296
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.04 E-value=0.00037 Score=58.74 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=23.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
..++|+||+|+||||+++.++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47999999999999999999997753
No 297
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.03 E-value=0.0003 Score=59.12 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=25.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
..+..|+|.|++||||||+++.|+..++.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45778999999999999999999998764
No 298
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.02 E-value=0.00039 Score=63.32 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
.+..++|.||+||||||++++|++.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455899999999999999999999875
No 299
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.02 E-value=0.00041 Score=60.30 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANF 49 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~ 49 (299)
.+..+.|.||+||||||+++.|+..++..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~ 37 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARY 37 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 356899999999999999999999887544
No 300
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.01 E-value=0.00042 Score=58.02 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
+..|+|.|++||||||+++.|+..++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 567999999999999999999998775
No 301
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.01 E-value=0.001 Score=68.58 Aligned_cols=70 Identities=11% Similarity=0.129 Sum_probs=45.5
Q ss_pred HHHhhhcccCCHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccH
Q psy13773 116 RELQELVQDVDLNY--IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITR 193 (299)
Q Consensus 116 ~R~~~l~~~v~l~~--LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~ 193 (299)
.|...++.++++.. +.+....||||+.|++..+.++.. .+.-...+..+|+...+++.+.
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~------------------~p~~p~LLILDEPTsGLD~~~~ 844 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRK------------------RDTGRTLYILDEPTVGLHFEDV 844 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTS------------------CCCSSEEEEEESTTTTCCHHHH
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhh------------------CCCCCCEEEEECCCCCCCHHHH
Confidence 45556777788754 345667899999999887654321 0100123446677777777777
Q ss_pred HHHHHHHHhc
Q psy13773 194 AHFEEAMRFA 203 (299)
Q Consensus 194 ~Df~~AL~~~ 203 (299)
+.+.++|++.
T Consensus 845 ~~L~~lL~~L 854 (916)
T 3pih_A 845 RKLVEVLHRL 854 (916)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7888887765
No 302
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.01 E-value=0.00042 Score=57.66 Aligned_cols=28 Identities=18% Similarity=0.450 Sum_probs=24.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFI 50 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i 50 (299)
.|+|.|++||||||+++.|+..++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 5889999999999999999999886544
No 303
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.99 E-value=0.00041 Score=65.43 Aligned_cols=29 Identities=31% Similarity=0.419 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
.++..++|.||+||||||++++|++.+..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 56778999999999999999999998764
No 304
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.99 E-value=0.0004 Score=58.93 Aligned_cols=30 Identities=33% Similarity=0.337 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFI 50 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i 50 (299)
.+..|+|.|++||||||+++.|+. ++..++
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~i 32 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVI 32 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEE
Confidence 356799999999999999999998 654443
No 305
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.98 E-value=0.00027 Score=64.36 Aligned_cols=23 Identities=57% Similarity=0.921 Sum_probs=21.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhhc
Q psy13773 24 VLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 24 vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
++|+||+||||||+++++|+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 99999999999999999999864
No 306
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.97 E-value=0.00038 Score=59.00 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=25.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
.|+|.|++||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 478999999999999999999887655544
No 307
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.96 E-value=0.0004 Score=57.14 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
.|+|.|++||||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999876
No 308
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.96 E-value=0.00058 Score=60.43 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
++..+++|+||||||||+++++||...
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 445689999999999999999999964
No 309
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.95 E-value=0.00047 Score=58.67 Aligned_cols=28 Identities=43% Similarity=0.608 Sum_probs=24.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFI 50 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i 50 (299)
.++|.|||||||+|.++.|+..++...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 4788999999999999999998875543
No 310
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.95 E-value=0.00037 Score=59.99 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=25.5
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
...++..+.|.|++||||||++++|++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4467889999999999999999999997
No 311
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.95 E-value=0.00023 Score=59.60 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=28.3
Q ss_pred hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
+.++.+..+..++|+|++|+|||||+++|++..
T Consensus 18 l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 18 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred HhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344788899999999999999999999998754
No 312
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.95 E-value=0.00047 Score=59.44 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=27.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFI 50 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i 50 (299)
..+..+.|.|++||||||+++.|+..++..++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 56778999999999999999999998875443
No 313
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.94 E-value=0.00039 Score=67.84 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=33.3
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC---ee-cccchhhh
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQAN---FI-SVKGPELL 58 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~---~i-~i~~~~l~ 58 (299)
.+.++..+.|+|+||||||||+++|++.+... .+ .+++.++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 45688999999999999999999999988642 23 46766553
No 314
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.93 E-value=0.00055 Score=56.41 Aligned_cols=30 Identities=27% Similarity=0.141 Sum_probs=25.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh---cCCeecc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANEC---QANFISV 52 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i 52 (299)
.|+|.|++||||||+++.|+..+ +..++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 47899999999999999999987 5555544
No 315
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.93 E-value=0.00053 Score=62.43 Aligned_cols=35 Identities=34% Similarity=0.551 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccch
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 55 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~ 55 (299)
+..++|+||+||||||+++.||..++..++.+|..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 35799999999999999999999988766666543
No 316
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.92 E-value=0.00046 Score=70.81 Aligned_cols=38 Identities=37% Similarity=0.594 Sum_probs=33.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhhhh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 59 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l~~ 59 (299)
..++|+||+|||||+++++|+..+ +..++.++|..+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 629 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccc
Confidence 489999999999999999999988 56788999887643
No 317
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.91 E-value=4.5e-05 Score=68.59 Aligned_cols=51 Identities=14% Similarity=-0.087 Sum_probs=35.7
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 202 FARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 202 ~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
+++| .+|+++-|.+..++.+.+.+.. ..... ....++|+|||||||||+|.
T Consensus 5 ~~~p-~~~~~~ig~~~~~~~l~~~l~~--~~~~~-------~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 5 ALRP-KTLDEYIGQERLKQKLRVYLEA--AKARK-------EPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCC-CSTTTCCSCHHHHHHHHHHHHH--HHHHC-------SCCCCCEEECCTTCCCHHHH
T ss_pred ccCc-ccHHHhhCHHHHHHHHHHHHHH--HHccC-------CCCCcEEEECCCCCCHHHHH
Confidence 3456 4677887888888888877765 21110 12357999999999999874
No 318
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.90 E-value=0.00054 Score=57.25 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=25.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFIS 51 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i~ 51 (299)
.++|.|++||||||+++.|+..++..++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 78999999999999999999998865543
No 319
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.89 E-value=6.6e-05 Score=61.27 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 208 NDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 208 sw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
+|+++-|-++..+.+.+.+.- ....++++|||||||||.|.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSCHHHHH
T ss_pred cccccccchHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHH
Confidence 344444555555555555422 23467999999999999985
No 320
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.86 E-value=0.00061 Score=61.70 Aligned_cols=35 Identities=34% Similarity=0.673 Sum_probs=27.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhhc------CCeecccchh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANECQ------ANFISVKGPE 56 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l~------~~~i~i~~~~ 56 (299)
..++|+||+|+||||+++++++.+. ..++.+++.+
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 3499999999999999999999864 2455566554
No 321
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.86 E-value=0.00071 Score=63.43 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=25.3
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIAN 43 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~ 43 (299)
-++.++..++|+||||||||||++.++.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3789999999999999999999997763
No 322
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.85 E-value=0.00015 Score=66.11 Aligned_cols=47 Identities=13% Similarity=-0.005 Sum_probs=34.8
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.+++| -+|+++-|-+.+.+.+...+.- .+-+.+|||||||||||.+.
T Consensus 17 ~k~rp-~~~~~~~g~~~~~~~L~~~i~~--------------g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 17 EKYRP-ETLDEVYGQNEVITTVRKFVDE--------------GKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp HHTCC-SSGGGCCSCHHHHHHHHHHHHT--------------TCCCCEEEECSSSSSHHHHH
T ss_pred HHhCC-CcHHHhcCcHHHHHHHHHHHhc--------------CCCceEEEECCCCCCHHHHH
Confidence 35677 5677777778888888877754 12234899999999999764
No 323
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.85 E-value=0.00076 Score=57.75 Aligned_cols=39 Identities=28% Similarity=0.338 Sum_probs=30.5
Q ss_pred cCCCCCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeeccc
Q psy13773 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVK 53 (299)
Q Consensus 15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~ 53 (299)
..++.++..++|+||||+|||||+..++... +...++++
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4578999999999999999999988777643 33455554
No 324
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.85 E-value=0.00022 Score=66.69 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=27.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
+++.+.++ .++|+||||+|||||+++|+..++
T Consensus 54 v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 54 LELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred EEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 35667788 999999999999999999988765
No 325
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.85 E-value=0.00048 Score=61.91 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANF 49 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~ 49 (299)
..++.+.|.||||+|||||+++|++...+..
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~ 197 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRV 197 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCCCC-
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccccccc
Confidence 4578999999999999999999999776543
No 326
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.82 E-value=0.00059 Score=57.39 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
-..|+|.|++||||||+++.|+..++..++..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 35789999999999999999999877655543
No 327
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.82 E-value=0.00062 Score=62.85 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhc-CCeec
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQ-ANFIS 51 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~-~~~i~ 51 (299)
.++.++|+||||+|||||+++|++... .....
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~ 246 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTND 246 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCC
Confidence 578999999999999999999999766 44333
No 328
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.81 E-value=0.00061 Score=58.30 Aligned_cols=28 Identities=25% Similarity=0.568 Sum_probs=24.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANFI 50 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~i 50 (299)
.|+|.|++||||||+++.|+..++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4789999999999999999998875443
No 329
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.81 E-value=8.9e-05 Score=70.60 Aligned_cols=47 Identities=19% Similarity=0.053 Sum_probs=35.2
Q ss_pred HhccCCCCHHHHHHHHHHH---HHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 201 RFARRSVNDADIRKYEMFA---QTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 201 ~~~~PsVsw~DIggL~~vk---~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.+++| -+++|+-|.+.+. +.+...+.-+ +-+++|||||||||||+|.
T Consensus 18 ~r~rP-~~l~~ivGq~~~~~~~~~L~~~i~~~--------------~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 18 ARMRP-ENLAQYIGQQHLLAAGKPLPRAIEAG--------------HLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp HHTCC-CSTTTCCSCHHHHSTTSHHHHHHHHT--------------CCCEEEEECSTTSSHHHHH
T ss_pred HHhCC-CCHHHhCCcHHHHhchHHHHHHHHcC--------------CCcEEEEECCCCCcHHHHH
Confidence 45677 6777777777777 6677776651 2268999999999999874
No 330
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.80 E-value=0.00021 Score=64.73 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQAN 48 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~ 48 (299)
.+.+++.++|+||||+|||||+++|++.....
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~ 200 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLR 200 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccccc
Confidence 34578999999999999999999999876543
No 331
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.80 E-value=0.00087 Score=60.54 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=27.0
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
+...+++.++|+|++|+||||+++.||..+.
T Consensus 99 ~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 99 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 3456788999999999999999999999764
No 332
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.79 E-value=0.00043 Score=61.63 Aligned_cols=34 Identities=44% Similarity=0.732 Sum_probs=27.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc-----CCeecccchh
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPE 56 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~-----~~~i~i~~~~ 56 (299)
.++|+||+|+|||+++++++..+. ..++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 78 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence 499999999999999999999862 2355666554
No 333
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.79 E-value=0.00087 Score=57.81 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=26.7
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
+..+..|.|.|++||||||+++.|+..+..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 347889999999999999999999998864
No 334
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.78 E-value=0.00081 Score=55.64 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=24.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh---cCCeec
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANEC---QANFIS 51 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~ 51 (299)
.|+|.|++||||||+++.|+..+ +..++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 47899999999999999999988 665553
No 335
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.78 E-value=7.5e-05 Score=69.07 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=39.2
Q ss_pred ccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC------------------CCCCCCCCCcccccC
Q psy13773 191 ITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSN------------------PNQSQSGGPNSAPAN 252 (299)
Q Consensus 191 it~~Df~~AL~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~------------------~~~~~~k~s~~l~~g 252 (299)
.+.+++.+.|.+ +|-|.+++|+.+...+.+ +++.... +...-+...++||||
T Consensus 10 ~~~~~l~~~L~~--------~viGq~~ak~~l~~~~~~--~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~G 79 (376)
T 1um8_A 10 PAPKELKAVLDN--------YVIGQEQAKKVFSVAVYN--HYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIG 79 (376)
T ss_dssp CCHHHHHHHHHT--------TCCSCHHHHHHHHHHHHH--HHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEEC
T ss_pred CCHHHHHHHHhh--------HccCcHHHHHHHHHHHHH--HHHHHHhhhhhhhccccccccccccccccccCCCCEEEEC
Confidence 456777777764 344778888888877643 2222211 011123456899999
Q ss_pred CCCCCCeeee
Q psy13773 253 ESGTGGILLM 262 (299)
Q Consensus 253 ~~gtg~~ll~ 262 (299)
|||||||+|.
T Consensus 80 p~GtGKT~la 89 (376)
T 1um8_A 80 PTGSGKTLMA 89 (376)
T ss_dssp CTTSSHHHHH
T ss_pred CCCCCHHHHH
Confidence 9999999873
No 336
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.78 E-value=0.00077 Score=62.21 Aligned_cols=52 Identities=23% Similarity=0.207 Sum_probs=38.0
Q ss_pred ccCcChhhhhcC---CCCCCcEEEEEcCCCChHHHHHHHHHHhhc---CCeecccchh
Q psy13773 5 YPVEHPEKFLKF---GMQPSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPE 56 (299)
Q Consensus 5 ~pl~~p~~~~sl---~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~---~~~i~i~~~~ 56 (299)
+|.-.+++-.-+ ++.++..++|+||||||||||+.+++..+. ...++++...
T Consensus 42 i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 42 IPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp ECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 344455554434 588999999999999999999999998653 3455666443
No 337
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.00022 Score=64.82 Aligned_cols=20 Identities=15% Similarity=-0.002 Sum_probs=17.0
Q ss_pred CCCCcccccCCCCCCCeeee
Q psy13773 243 SGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 243 ~k~s~~l~~g~~gtg~~ll~ 262 (299)
.+.+++++|||||||||++.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 45678999999999999864
No 338
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.77 E-value=7.3e-05 Score=64.78 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=26.9
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC--Ceecccchhh
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL 57 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~--~~i~i~~~~l 57 (299)
+.+.. ..++|+||||||||||+++|++.+.+ +.+.+++.++
T Consensus 23 ~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 23 FDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp ECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 44443 56789999999999999999998764 3455555544
No 339
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.76 E-value=0.00041 Score=68.43 Aligned_cols=32 Identities=34% Similarity=0.567 Sum_probs=27.7
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
+.+..+..++|+||||||||||+++|++.+..
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 34567789999999999999999999998754
No 340
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.76 E-value=0.00049 Score=62.40 Aligned_cols=37 Identities=32% Similarity=0.312 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhh----------cCCeecccchhh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPEL 57 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l----------~~~~i~i~~~~l 57 (299)
-..++|.|++|+|||||++.|.+.. ..+.+.|++..+
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l 50 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI 50 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence 3578999999999999999999865 345566666554
No 341
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.76 E-value=0.00092 Score=58.21 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=25.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCC
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQAN 48 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~ 48 (299)
..+..|+|.|++||||||+++.|+..++..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 345679999999999999999999988754
No 342
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.76 E-value=0.00084 Score=60.40 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=25.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANF 49 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~ 49 (299)
..+..++|.||||+|||||+++|+ ...+..
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~ 192 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRT 192 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcc
Confidence 457899999999999999999999 766443
No 343
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.76 E-value=0.00061 Score=65.71 Aligned_cols=27 Identities=33% Similarity=0.667 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
.+..++|+||||||||+++++|+..++
T Consensus 40 ~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 40 SGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred cCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 456899999999999999999999874
No 344
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.76 E-value=0.00097 Score=62.72 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=27.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFIS 51 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~ 51 (299)
..+..|+|+|+|||||||+++.|+..++..++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 456789999999999999999999987654443
No 345
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.76 E-value=0.00066 Score=61.70 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
.++|+||+|+||||+++++++.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999999954
No 346
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.75 E-value=0.00079 Score=61.60 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKG 54 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~ 54 (299)
+..|+|+||+|||||+|+..||..++..+|..|.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 4579999999999999999999998865555443
No 347
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.74 E-value=0.0012 Score=60.50 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=30.8
Q ss_pred cCcChhhhhcC--CCCCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773 6 PVEHPEKFLKF--GMQPSRGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 6 pl~~p~~~~sl--~i~~~~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
|.-.+.+-.-+ ++.++..++|+||+|+|||+|+..+|..
T Consensus 105 ~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 105 TTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred ecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33344443333 6899999999999999999999999986
No 348
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.74 E-value=0.00095 Score=60.37 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccch
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 55 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~ 55 (299)
.+..++|.||+|||||+|+..||..++..++..|..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 356789999999999999999999887666655543
No 349
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.73 E-value=0.001 Score=59.14 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCee
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFI 50 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i 50 (299)
.+..|+|.|++||||||+++.|+ .++..++
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~i 103 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYII 103 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCCcEE
Confidence 45679999999999999999999 5665443
No 350
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.73 E-value=0.0002 Score=64.58 Aligned_cols=49 Identities=12% Similarity=-0.037 Sum_probs=37.2
Q ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 200 MRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 200 L~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.++++| .+++|+-|.+++++.+.+.+.-+ +..+.+|+|||||||||.+.
T Consensus 17 ~~k~rP-~~~~~ivg~~~~~~~l~~~l~~~-------------~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 17 EQKYRP-STIDECILPAFDKETFKSITSKG-------------KIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp HHHSCC-CSTTTSCCCHHHHHHHHHHHHTT-------------CCCSEEEECSSTTSSHHHHH
T ss_pred HHhhCC-CCHHHHhCcHHHHHHHHHHHHcC-------------CCCeEEEeeCcCCCCHHHHH
Confidence 355777 67888888888888888887631 22256789999999999874
No 351
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.71 E-value=0.0009 Score=59.95 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=26.2
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
-..+..|+|.|++|||||||++.|+..+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 356788999999999999999999998753
No 352
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.70 E-value=0.00098 Score=60.46 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=31.3
Q ss_pred cCcChhhhhc--CCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 6 PVEHPEKFLK--FGMQPSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 6 pl~~p~~~~s--l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
|.-.+.+-.- -++.++..++|+||||+|||+|+..++...
T Consensus 90 ~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 90 STGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp CCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 3334444333 378999999999999999999999999864
No 353
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.69 E-value=0.00045 Score=62.58 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
...++|+||+|||||+++++++..+.
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34699999999999999999999875
No 354
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.68 E-value=0.00018 Score=65.54 Aligned_cols=47 Identities=15% Similarity=0.010 Sum_probs=34.4
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHhh-cCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 201 RFARRSVNDADIRKYEMFAQTLQQSR-GFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 201 ~~~~PsVsw~DIggL~~vk~~i~~ti-~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
++++| .+++|+-|.+++.+.+...+ .- .+-+.+++|||||||||+|.
T Consensus 6 ~kyrP-~~~~~~vg~~~~~~~l~~~~~~~--------------~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 6 DKYRP-KSLNALSHNEELTNFLKSLSDQP--------------RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp TTTCC-CSGGGCCSCHHHHHHHHTTTTCT--------------TCCCCEEEECSTTSSHHHHH
T ss_pred hccCC-CCHHHhcCCHHHHHHHHHHHhhC--------------CCCCeEEEECCCCCCHHHHH
Confidence 35667 56788878888888887765 22 12234999999999999875
No 355
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.67 E-value=0.0012 Score=59.80 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccch
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 55 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~ 55 (299)
+..++|.||+|||||+|+..||..++..++..|..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 45788999999999999999999887555554443
No 356
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.62 E-value=0.0012 Score=55.19 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
-|+|+||+|+|||||++.|.....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 388999999999999999987653
No 357
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.61 E-value=0.0014 Score=59.63 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=28.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
.++.+.+++.++++|++|+||||++..||..+.
T Consensus 98 l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 98 IDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp CCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345567889999999999999999999999764
No 358
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.58 E-value=0.00026 Score=63.17 Aligned_cols=47 Identities=19% Similarity=0.037 Sum_probs=34.7
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.+++| .+|+++-|-++..+.+.+.+.- .+-+.+|+|||||||||.+.
T Consensus 13 ~~~~p-~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 13 EKYRP-QVLSDIVGNKETIDRLQQIAKD--------------GNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp HHTCC-SSGGGCCSCTHHHHHHHHHHHS--------------CCCCCEEEECSTTSSHHHHH
T ss_pred HhcCC-CCHHHHHCCHHHHHHHHHHHHc--------------CCCCeEEEECcCCCCHHHHH
Confidence 34666 5677777888888888887654 12234999999999999863
No 359
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.58 E-value=0.00084 Score=59.81 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=26.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc-----CCeecccchh
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPE 56 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~-----~~~i~i~~~~ 56 (299)
.++|+||+|+|||+++++++..+. ..++++++.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 399999999999999999999862 3355566543
No 360
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.58 E-value=0.0014 Score=58.92 Aligned_cols=35 Identities=23% Similarity=0.181 Sum_probs=29.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhhcCCeecccchh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 56 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~ 56 (299)
..++|+||+|+|||+|++.++.......+++++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 58999999999999999999998766666666543
No 361
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.58 E-value=0.00032 Score=55.90 Aligned_cols=18 Identities=17% Similarity=-0.003 Sum_probs=15.5
Q ss_pred CCcccccCCCCCCCeeee
Q psy13773 245 GPNSAPANESGTGGILLM 262 (299)
Q Consensus 245 ~s~~l~~g~~gtg~~ll~ 262 (299)
...||+|||||||||++-
T Consensus 24 ~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CSCEEEESSTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 356999999999999874
No 362
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.56 E-value=0.00098 Score=68.69 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=26.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 43 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~ 43 (299)
++|.+..++.++|+||||+||||++|+++.
T Consensus 666 vsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 666 TDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 456677889999999999999999999985
No 363
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.56 E-value=0.0011 Score=55.96 Aligned_cols=31 Identities=26% Similarity=0.510 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFIS 51 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~ 51 (299)
+..+.|.|++||||||+++.|+..++..++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 3568999999999999999999988755543
No 364
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.55 E-value=0.001 Score=59.12 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
..|+|.|+|||||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999999863
No 365
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.54 E-value=0.00086 Score=66.24 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=25.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhh---cCCeecccchhh
Q psy13773 24 VLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL 57 (299)
Q Consensus 24 vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l 57 (299)
++|+||+|||||||+++|++.. ..+.+.+++.++
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL 84 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence 9999999999999999999976 345566665553
No 366
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.54 E-value=0.0013 Score=63.71 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=28.9
Q ss_pred cCCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
+.++.++..++|.|+||||||||++++++...
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999998654
No 367
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.51 E-value=0.00026 Score=56.34 Aligned_cols=17 Identities=12% Similarity=-0.037 Sum_probs=15.0
Q ss_pred CcccccCCCCCCCeeee
Q psy13773 246 PNSAPANESGTGGILLM 262 (299)
Q Consensus 246 s~~l~~g~~gtg~~ll~ 262 (299)
..||+|||||||||++-
T Consensus 28 ~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVA 44 (143)
T ss_dssp SCEEEEEETTCCHHHHH
T ss_pred CcEEEECCCCccHHHHH
Confidence 46999999999999874
No 368
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.49 E-value=0.0012 Score=61.10 Aligned_cols=57 Identities=11% Similarity=0.118 Sum_probs=36.4
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHHHHHHHHHhcc
Q psy13773 133 VTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFAR 204 (299)
Q Consensus 133 ~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~~~ 204 (299)
....||||+.|++....++...+ .. ...+ ..+..+|+....++.+.+.+.+.|++++
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~-~~-----------~~~p---~~lllDEpt~~LD~~~~~~~~~~l~~l~ 332 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAE-VA-----------SGRL---DAFFIDEGFSSLDTENKEKIASVLKELE 332 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHH-HT-----------TTTC---CEEEEESCCTTSCHHHHHHHHHHHHGGG
T ss_pred CchhCCHHHHHHHHHHHHHHhhh-cc-----------cCCC---CEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 34579999999988766554222 11 0111 1344667777777788888888888764
No 369
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.49 E-value=0.0013 Score=54.37 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
-.++|+|++|+|||||++.+++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999999854
No 370
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.49 E-value=0.0017 Score=57.96 Aligned_cols=34 Identities=44% Similarity=0.741 Sum_probs=26.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcC-----Ceecccchh
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPE 56 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~-----~~i~i~~~~ 56 (299)
.++|+||+|+|||+++++++..+.. .++.+++.+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 5999999999999999999998632 245555543
No 371
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.48 E-value=0.0015 Score=59.83 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=27.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKG 54 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~ 54 (299)
..|+|.||+|||||||++.||..++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 478999999999999999999998755554443
No 372
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.48 E-value=0.00015 Score=59.03 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=15.9
Q ss_pred CCcccccCCCCCCCeeee
Q psy13773 245 GPNSAPANESGTGGILLM 262 (299)
Q Consensus 245 ~s~~l~~g~~gtg~~ll~ 262 (299)
..++++|||||||||.|.
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 567999999999999885
No 373
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.47 E-value=0.0018 Score=59.05 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
+..++|+||+|+|||+++++++..+..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999997753
No 374
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.47 E-value=0.00026 Score=61.96 Aligned_cols=42 Identities=12% Similarity=-0.039 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 209 DADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 209 w~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
++++-|.....+.+.+.+.. -.. ....+|+|||||||||+|.
T Consensus 5 f~~~ig~~~~~~~~~~~~~~--~~~----------~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSH--LAP----------LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp -----CCCHHHHHHHHHHHH--HTT----------SCSCEEEECCTTSCHHHHH
T ss_pred cccceeCCHHHHHHHHHHHH--HhC----------CCCCEEEECCCCCcHHHHH
Confidence 44444555555555555443 122 2358999999999999874
No 375
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.46 E-value=0.0017 Score=58.29 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
.+++.++|+|++|+||||++..||..+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999998764
No 376
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.46 E-value=0.0015 Score=60.15 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=31.1
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccc
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG 54 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~ 54 (299)
-++.++..++|+||||+|||||+..++... +...++++.
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 468899999999999999999999998754 234555553
No 377
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.45 E-value=0.0015 Score=54.28 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
-.++|+|++|+|||||++++++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999999853
No 378
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.44 E-value=0.0015 Score=55.30 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcCCeecccc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKG 54 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~ 54 (299)
.+.+++|.||+|+|||+|+..|+.... .++.-|.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 478899999999999999999998765 4444443
No 379
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.44 E-value=0.0021 Score=53.18 Aligned_cols=27 Identities=26% Similarity=0.146 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
....++|.|++|+|||||++.|+..+.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 346789999999999999999998753
No 380
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.42 E-value=0.0014 Score=60.56 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=23.8
Q ss_pred cCCCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIAN 43 (299)
Q Consensus 15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~ 43 (299)
++.+.++ .++|+||||+||||++++|+.
T Consensus 21 ~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 21 TLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 4455566 889999999999999999996
No 381
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.41 E-value=0.0016 Score=66.21 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
..++.++|+||||+||||++|+|++.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 57789999999999999999999984
No 382
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.39 E-value=0.0019 Score=51.80 Aligned_cols=25 Identities=32% Similarity=0.297 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
+...+|+||||+||||++.+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3478899999999999999998755
No 383
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.39 E-value=0.00085 Score=56.32 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
.|+|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999875
No 384
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.39 E-value=0.0015 Score=60.29 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=28.3
Q ss_pred CCcEEEE--EcCCCChHHHHHHHHHHhhc---------CCeecccch
Q psy13773 20 PSRGVLF--YGPPGCGKTLLAKAIANECQ---------ANFISVKGP 55 (299)
Q Consensus 20 ~~~~vLL--~Gp~GsGKTtLlr~La~~l~---------~~~i~i~~~ 55 (299)
.+..++| +||+|+|||+|++.++..+. ..+++++|.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF 95 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECC
Confidence 4567888 99999999999999998763 345666653
No 385
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.37 E-value=0.00036 Score=57.35 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=16.5
Q ss_pred CCcccccCCCCCCCeeee
Q psy13773 245 GPNSAPANESGTGGILLM 262 (299)
Q Consensus 245 ~s~~l~~g~~gtg~~ll~ 262 (299)
..++++|||||||||+|+
T Consensus 38 g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp CCEEEECCSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 568999999999999987
No 386
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.36 E-value=0.002 Score=60.65 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=27.3
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
+.+..+..++|+||||+|||||+++|+..++.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 44556789999999999999999999997754
No 387
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.35 E-value=0.0021 Score=57.75 Aligned_cols=34 Identities=29% Similarity=0.235 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeecccchh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 56 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~~~~ 56 (299)
+..++|+||+|+|||+|++.++...+ .+++++..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~ 64 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRE 64 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeec
Confidence 47899999999999999999998864 55666543
No 388
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.34 E-value=0.0004 Score=58.53 Aligned_cols=48 Identities=19% Similarity=0.095 Sum_probs=32.8
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
.+.+| -.++++-|-+...+.+.+.+..+ +....+++|||||||||.|.
T Consensus 15 ~~~~p-~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 15 RKWRP-QTFADVVGQEHVLTALANGLSLG-------------RIHHAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp HHTCC-CSGGGCCSCHHHHHHHHHHHHHT-------------CCCSEEEEECSTTSCHHHHH
T ss_pred hccCC-ccHHHHhCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHH
Confidence 34555 45666767777777777776541 11246899999999999874
No 389
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.34 E-value=0.00043 Score=60.85 Aligned_cols=19 Identities=11% Similarity=-0.067 Sum_probs=16.4
Q ss_pred CCCcccccCCCCCCCeeee
Q psy13773 244 GGPNSAPANESGTGGILLM 262 (299)
Q Consensus 244 k~s~~l~~g~~gtg~~ll~ 262 (299)
...++|||||||||||+|.
T Consensus 63 ~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SEEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 3458999999999999874
No 390
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.32 E-value=0.0022 Score=60.00 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVK 53 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~ 53 (299)
...|+|.||+|+|||||++.||..++..++..|
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 457889999999999999999998875555444
No 391
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.31 E-value=0.0012 Score=59.20 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
.+..|+|.|++||||||+++.|+..++
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345799999999999999999999776
No 392
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.30 E-value=0.0026 Score=62.88 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccchhh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL 57 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~~~l 57 (299)
.+..|+|.|.+||||||+++.|+..+ +..++.+++..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 56789999999999999999999988 777777775544
No 393
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.27 E-value=0.00045 Score=68.10 Aligned_cols=48 Identities=13% Similarity=0.005 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 212 IRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 212 IggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
|-|.+++|+.+.-.+.-|.+-..++ ...+....+||+||||||||+|.
T Consensus 297 I~G~e~vk~al~~~l~~g~~~~~~~---~~~r~~~~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 297 IYGHWELKEALALALFGGVPKVLED---TRIRGDIHILIIGDPGTAKSQML 344 (595)
T ss_dssp TSCCHHHHHHHTTTTTCCCCEETTT---TEECCSCCEEEEESSCCTHHHHH
T ss_pred hcChHHHHHHHHHHHhCCCcccccC---CCcCCCcceEEECCCchHHHHHH
Confidence 4466777877754433211111222 44555669999999999999884
No 394
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.26 E-value=0.0011 Score=56.28 Aligned_cols=18 Identities=11% Similarity=-0.086 Sum_probs=16.0
Q ss_pred CCcccccCCCCCCCeeee
Q psy13773 245 GPNSAPANESGTGGILLM 262 (299)
Q Consensus 245 ~s~~l~~g~~gtg~~ll~ 262 (299)
..++++|||||||||.|.
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999875
No 395
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.26 E-value=0.0018 Score=66.90 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=25.6
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 43 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~ 43 (299)
++|.+..++.++|.||||+||||++|+++.
T Consensus 655 isl~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 655 VYFEKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345567789999999999999999999954
No 396
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.25 E-value=0.00044 Score=63.12 Aligned_cols=48 Identities=19% Similarity=0.095 Sum_probs=35.3
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 201 RFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 201 ~~~~PsVsw~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
++++| .+|+|+-|-+++.+.+...+.-+ +....+|+|||||||||.+.
T Consensus 8 ~k~rp-~~~~~~vg~~~~~~~L~~~l~~~-------------~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 8 RKWRP-QTFADVVGQEHVLTALANGLSLG-------------RIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp HHTCC-CSTTTSCSCHHHHHHHHHHHHHT-------------CCCSEEEEESCTTSSHHHHH
T ss_pred HhhCC-CchhhccCcHHHHHHHHHHHHhC-------------CCCeEEEEECCCCCCHHHHH
Confidence 45677 46777878888888888877541 11236899999999999874
No 397
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.20 E-value=0.0021 Score=65.01 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=25.6
Q ss_pred cCCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
++.+. ++.++|.||||+||||++|+|++..
T Consensus 571 disl~-g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 571 DLEMA-HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eccCC-CcEEEEECCCCCChHHHHHHHHhhh
Confidence 34445 8999999999999999999999854
No 398
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.14 E-value=0.002 Score=58.28 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=24.8
Q ss_pred cCCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 15 sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
++.+.++ ..+|+||||+|||+|+.+|...+
T Consensus 19 ~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 19 LIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred EEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 3455555 89999999999999999999654
No 399
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.13 E-value=0.0006 Score=56.94 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=15.8
Q ss_pred CcccccCCCCCCCeeee
Q psy13773 246 PNSAPANESGTGGILLM 262 (299)
Q Consensus 246 s~~l~~g~~gtg~~ll~ 262 (299)
.++++|||||||||.|+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999986
No 400
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.12 E-value=0.0042 Score=53.05 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIAN 43 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~ 43 (299)
++.++..++|+|+||+|||+++..+|.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999999999988764
No 401
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.11 E-value=0.003 Score=51.28 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
++..++|+|++|+|||||++.+++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999975
No 402
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.08 E-value=0.0042 Score=52.40 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=27.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANECQANFIS 51 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~ 51 (299)
..|.|.|+.||||||+++.||..++..++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 479999999999999999999999988763
No 403
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.05 E-value=0.0041 Score=57.33 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=36.1
Q ss_pred cCcChhhhhcC---CCCCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccc
Q psy13773 6 PVEHPEKFLKF---GMQPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG 54 (299)
Q Consensus 6 pl~~p~~~~sl---~i~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~ 54 (299)
|.-.+.+-.-+ ++.++..++|+|++|+|||||+..++... +...++++.
T Consensus 45 ~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 45 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 33444444434 58899999999999999999999998754 345566664
No 404
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.03 E-value=0.00071 Score=64.64 Aligned_cols=40 Identities=13% Similarity=0.000 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 209 DADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 209 w~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
+++|=|-++..+.+.+.+.- +...++|||||||||||+|.
T Consensus 179 ld~iiGr~~~i~~l~~~l~r--------------~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHH
T ss_pred CCCccCcHHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHH
Confidence 34444445555555555433 33457899999999999874
No 405
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.00 E-value=0.0032 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
..++|+|++|+|||||++.+++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999874
No 406
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.00 E-value=0.0045 Score=53.50 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=26.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
..+.|.|+|||||||+++.|+..++...+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 4588999999999999999999987665543
No 407
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.00 E-value=0.0076 Score=66.52 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=32.7
Q ss_pred cCcChhhhhcCC---CCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 6 PVEHPEKFLKFG---MQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 6 pl~~p~~~~sl~---i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
|.-++++-.-++ +.++++++|+||||||||+|+.+++.+..
T Consensus 1409 sTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1409 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp CCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444555554444 89999999999999999999999988654
No 408
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.00 E-value=0.0046 Score=55.40 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
+++.++++|++|+||||+++.||..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999764
No 409
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.99 E-value=0.0046 Score=50.86 Aligned_cols=26 Identities=19% Similarity=0.055 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
...+.|.|++|+||||++..|+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 35789999999999999999998764
No 410
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.99 E-value=0.0039 Score=56.23 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=30.2
Q ss_pred CcChhhhhcC--CCCCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773 7 VEHPEKFLKF--GMQPSRGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 7 l~~p~~~~sl--~i~~~~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
.-.+.+-.-+ +++++..++|+|+||+|||+|+..+|..
T Consensus 82 TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 82 TSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp CSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3344443333 6889999999999999999999999975
No 411
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.99 E-value=0.00092 Score=60.24 Aligned_cols=19 Identities=21% Similarity=-0.008 Sum_probs=16.5
Q ss_pred CCCcccccCCCCCCCeeee
Q psy13773 244 GGPNSAPANESGTGGILLM 262 (299)
Q Consensus 244 k~s~~l~~g~~gtg~~ll~ 262 (299)
...++++|||||||||+|+
T Consensus 36 ~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp SCSSEEEECSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3468999999999999986
No 412
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.97 E-value=0.0046 Score=56.13 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
.+..++|+||+|+|||++++++|..+.
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHh
Confidence 345799999999999999999999765
No 413
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.97 E-value=0.0042 Score=52.41 Aligned_cols=27 Identities=30% Similarity=0.210 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
+...+|+||||+||||++.+|.-.+..
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 357889999999999999999876653
No 414
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.95 E-value=0.0095 Score=53.60 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=33.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhh------cCCeecccchhhhhccccccHHHHHHHHHHH
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANEC------QANFISVKGPELLTMWFGESEANVRDIFDKV 76 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l------~~~~i~i~~~~l~~~~~g~~~~~i~~~f~~a 76 (299)
...++|+||+|+|||+++++++..+ ...+++++..+- ......++.+.+.+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~id~ir~li~~~ 74 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIGIDDIRTIKDFL 74 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCCHHHHHHHHHHH
Confidence 4589999999999999999999864 234555553210 11233466666544
No 415
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.94 E-value=0.0047 Score=56.38 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=26.4
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
+.+..+..++|.|++|+||||++++|+..+
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 455778899999999999999999999865
No 416
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.91 E-value=0.0041 Score=56.44 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=29.0
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhh-----cCCeecccch
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGP 55 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l-----~~~~i~i~~~ 55 (299)
-++.++ .++|+||||+|||||+-.++... +...++|+..
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 358888 79999999999999977776643 2345666643
No 417
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.90 E-value=0.00066 Score=61.33 Aligned_cols=17 Identities=12% Similarity=0.018 Sum_probs=15.1
Q ss_pred CcccccCCCCCCCeeee
Q psy13773 246 PNSAPANESGTGGILLM 262 (299)
Q Consensus 246 s~~l~~g~~gtg~~ll~ 262 (299)
.++|||||||||||+|.
T Consensus 47 ~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSV 63 (331)
T ss_dssp CCEEEESCCCHHHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 38999999999999874
No 418
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.88 E-value=0.0044 Score=64.69 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
++.++|+||||+||||++|+| +.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HH
T ss_pred CcEEEEECCCCCChHHHHHHH-HH
Confidence 789999999999999999999 53
No 419
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.87 E-value=0.001 Score=60.00 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=16.4
Q ss_pred CCcccccCCCCCCCeeee
Q psy13773 245 GPNSAPANESGTGGILLM 262 (299)
Q Consensus 245 ~s~~l~~g~~gtg~~ll~ 262 (299)
..+++||||||||||.|+
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999986
No 420
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.87 E-value=0.0017 Score=61.18 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=28.1
Q ss_pred hhcCCCCCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773 13 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 13 ~~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
-+++.++.+..++|+|+||+|||||+++|++.
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 35667788889999999999999999999875
No 421
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.86 E-value=0.0052 Score=56.35 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
.+..+.|+|+||+|||||+++|++.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999999864
No 422
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.86 E-value=0.0033 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
.++|+|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 423
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.86 E-value=0.0059 Score=55.08 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=27.3
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
.++.++..++|.|+||+|||+|+..+|...
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999998754
No 424
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.84 E-value=0.0055 Score=57.20 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHH
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIAN 43 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~ 43 (299)
.+..+..++|+|+||+|||||+++|++
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 456788999999999999999999998
No 425
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.81 E-value=0.0055 Score=60.02 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=31.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhc----CCeecccchhh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPEL 57 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~----~~~i~i~~~~l 57 (299)
..+..|+|.|.+||||||+++.|+..++ ..++.+++..+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 3457889999999999999999999886 45666665443
No 426
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.81 E-value=0.0045 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
..++|+|++|+|||||++.+++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999974
No 427
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.80 E-value=0.0022 Score=63.20 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=24.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhcCCe
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANECQANF 49 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l~~~~ 49 (299)
.+||+||||||||+|+++|+..++...
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~ 355 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAV 355 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEE
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCce
Confidence 799999999999999999999876433
No 428
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.78 E-value=0.0057 Score=50.63 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
.+.+++|.|+||+||||++..+...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 5789999999999999999999874
No 429
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.77 E-value=0.0063 Score=57.73 Aligned_cols=30 Identities=33% Similarity=0.415 Sum_probs=27.6
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
.++.++..++|.|+||+|||||+..++...
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999854
No 430
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.76 E-value=0.0034 Score=56.34 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
.|+|+|++|+|||||+++|++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4699999999999999999874
No 431
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.75 E-value=0.007 Score=56.40 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=28.4
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
..+.+.+|..++|+||+|||||||++.|++.+
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 44677889999999999999999999999865
No 432
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.67 E-value=0.0034 Score=54.87 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 18 i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
...+..|.|.|+.||||||+++.|+..+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35678899999999999999999999873
No 433
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.62 E-value=0.0071 Score=52.00 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
+..|.|.|+.||||||+++.|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56789999999999999999999884
No 434
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.61 E-value=0.0079 Score=51.21 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
.+..|.|.|++||||||+++.|+..+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5778999999999999999999998753
No 435
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.59 E-value=0.0017 Score=62.67 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=14.8
Q ss_pred cccccCCCCCCCeeee
Q psy13773 247 NSAPANESGTGGILLM 262 (299)
Q Consensus 247 ~~l~~g~~gtg~~ll~ 262 (299)
.+|||||||||||+|.
T Consensus 43 ~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp EEEEECCSSSSHHHHH
T ss_pred eeEeecCchHHHHHHH
Confidence 7999999999999874
No 436
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.57 E-value=0.0075 Score=52.29 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
....+..|.|.|++||||||+++.|+..+.
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334577899999999999999999999775
No 437
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.57 E-value=0.0048 Score=58.06 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
.|+|+|+||+|||||+++|++..
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999999864
No 438
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.0095 Score=48.69 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
.....|+++|++|+|||||++.+++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344579999999999999999998753
No 439
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.52 E-value=0.0069 Score=54.31 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=25.3
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
+... +..+++.|++|+||||++..||..+.
T Consensus 94 ~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 94 PDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp CSSS-SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred cCCC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3434 78899999999999999999998764
No 440
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.52 E-value=0.0078 Score=47.37 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
.++++|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 441
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.52 E-value=0.0085 Score=55.36 Aligned_cols=49 Identities=27% Similarity=0.317 Sum_probs=35.7
Q ss_pred cCcChhhhhcC---CCCCCcEEEEEcCCCChHHHHHHHHHHhh---cCCeecccc
Q psy13773 6 PVEHPEKFLKF---GMQPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG 54 (299)
Q Consensus 6 pl~~p~~~~sl---~i~~~~~vLL~Gp~GsGKTtLlr~La~~l---~~~~i~i~~ 54 (299)
|.-.+.+-.-+ ++.++..++|+|++|+|||+|+..++... +...++|+.
T Consensus 56 ~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 56 STGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 44445544333 58899999999999999999999988754 334555654
No 442
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.51 E-value=0.0072 Score=55.02 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
...+|+||||+||||++.+|+-.+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999986533
No 443
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.49 E-value=0.0078 Score=47.64 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
-.|+++|++|+|||||++.+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 444
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.49 E-value=0.0074 Score=52.03 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
..+..|.|.|++||||||+++.|+..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4677899999999999999999999875
No 445
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.47 E-value=0.0022 Score=65.47 Aligned_cols=70 Identities=9% Similarity=0.117 Sum_probs=44.5
Q ss_pred HHHhhhcccCCHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccH
Q psy13773 116 RELQELVQDVDLNY--IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITR 193 (299)
Q Consensus 116 ~R~~~l~~~v~l~~--LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~ 193 (299)
+|...+++.+++.. +.+....||||+.|+|....++.. .+.-...+..+|+....++-+.
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~------------------~p~~p~lLILDEPTsGLD~~~~ 769 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRR------------------SGRGGTVYVLDEPTTGLHPADV 769 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSS------------------CCSSCEEEEEECTTTTCCHHHH
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHh------------------CCCCCCEEEEECCCCCCCHHHH
Confidence 45667778888865 345667899999999987653321 0000123446666666666677
Q ss_pred HHHHHHHHhc
Q psy13773 194 AHFEEAMRFA 203 (299)
Q Consensus 194 ~Df~~AL~~~ 203 (299)
+.+.+.|++.
T Consensus 770 ~~l~~lL~~L 779 (842)
T 2vf7_A 770 ERLQRQLVKL 779 (842)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776655
No 446
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.45 E-value=0.0018 Score=58.93 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=15.2
Q ss_pred CcccccCCCCCCCeeee
Q psy13773 246 PNSAPANESGTGGILLM 262 (299)
Q Consensus 246 s~~l~~g~~gtg~~ll~ 262 (299)
..++||||||||||+|.
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999874
No 447
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.43 E-value=0.0086 Score=47.16 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
-.|+++|++|+|||||++.+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 448
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.43 E-value=0.0023 Score=56.83 Aligned_cols=18 Identities=17% Similarity=-0.012 Sum_probs=15.4
Q ss_pred CCcccccCCCCCCCeeee
Q psy13773 245 GPNSAPANESGTGGILLM 262 (299)
Q Consensus 245 ~s~~l~~g~~gtg~~ll~ 262 (299)
...+||+||||||||+|.
T Consensus 47 ~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SEEEEEESCSSSSHHHHH
T ss_pred ceEEEEECCCCcCHHHHH
Confidence 346999999999999874
No 449
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.43 E-value=0.011 Score=47.36 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
.....|+|+|++|+|||||++.+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999873
No 450
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.42 E-value=0.0082 Score=47.15 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 451
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.38 E-value=0.011 Score=50.84 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhcCCeec
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQANFIS 51 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~ 51 (299)
...|.|.|++||||||+++.||..++..++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 4578999999999999999999999877644
No 452
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.37 E-value=0.0037 Score=64.64 Aligned_cols=69 Identities=9% Similarity=0.070 Sum_probs=44.2
Q ss_pred HHhhhcccCCHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHH
Q psy13773 117 ELQELVQDVDLNY--IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRA 194 (299)
Q Consensus 117 R~~~l~~~v~l~~--LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 194 (299)
+...+++.+++.. +.+....||||+.|+|....++.. .+.-...+..+|+....++.+.+
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~------------------~p~~p~lLILDEPTsGLD~~~~~ 903 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQK------------------RSTGRTVYILDEPTTGLHFDDIR 903 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSS------------------CCCSSEEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHh------------------CCCCCCEEEEECCCCCCCHHHHH
Confidence 4456777788864 345567899999999987654331 00001234466777777777777
Q ss_pred HHHHHHHhc
Q psy13773 195 HFEEAMRFA 203 (299)
Q Consensus 195 Df~~AL~~~ 203 (299)
.+.+.|++.
T Consensus 904 ~l~~lL~~L 912 (993)
T 2ygr_A 904 KLLNVINGL 912 (993)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777665
No 453
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.37 E-value=0.0091 Score=47.08 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
-.|+++|++|+|||||++.+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 454
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.36 E-value=0.008 Score=48.02 Aligned_cols=23 Identities=43% Similarity=0.652 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
-.|+|+|++|+|||||++.+.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999999874
No 455
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.34 E-value=0.0088 Score=56.52 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
++..+++.|++|+||||++..||..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478899999999999999999998663
No 456
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.33 E-value=0.012 Score=50.33 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
.+..|.|.|++||||||+++.|+..+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5788999999999999999999998875
No 457
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.32 E-value=0.0098 Score=47.14 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
-.|+++|++|+|||||++.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 458
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.32 E-value=0.0027 Score=57.80 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCeeee
Q psy13773 210 ADIRKYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLM 262 (299)
Q Consensus 210 ~DIggL~~vk~~i~~ti~~~~Plk~Pe~~~~~~~k~s~~l~~g~~gtg~~ll~ 262 (299)
+++-|-++..+.+.+.+.- -+. ......+++|||||||||.|.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~--~~~--------~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAP--ALR--------GEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGG--GTS--------SCCCCCEEECBCTTSSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH--HHc--------CCCCCcEEEECCCCCCHHHHH
Confidence 4455555556666555432 111 133568999999999999885
No 459
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.32 E-value=0.017 Score=49.11 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=24.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhhcCCeecc
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANECQANFISV 52 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~l~~~~i~i 52 (299)
-.|.|+|..||||||+++.++. ++..++..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vida 39 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDT 39 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEEC
Confidence 4689999999999999999998 66555443
No 460
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.32 E-value=0.0074 Score=54.06 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
...++|+|+||+|||||+++|.+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 347999999999999999999985
No 461
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.31 E-value=0.0097 Score=47.08 Aligned_cols=22 Identities=14% Similarity=0.360 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
.|+++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 462
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.31 E-value=0.0099 Score=47.21 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
-.|+++|++|+|||||++.+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 463
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.31 E-value=0.012 Score=57.01 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
.+..|+|+|.||+||||+++.|+..++
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456889999999999999999999875
No 464
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.30 E-value=0.012 Score=48.85 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
+..++++||+|+||||++..++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999998666554
No 465
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.30 E-value=0.01 Score=47.60 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
-.|+++|++|+|||||++.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 466
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.30 E-value=0.013 Score=46.56 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
....|+++|++|+|||||++.+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4557999999999999999999763
No 467
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.29 E-value=0.0093 Score=47.29 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
-.|+++|++|+|||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999873
No 468
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.26 E-value=0.013 Score=49.06 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
....++|+|++|+|||||++.+++..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999854
No 469
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.26 E-value=0.011 Score=48.74 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=21.8
Q ss_pred hcCCCCCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 14 ~sl~i~~~~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
.++.-...-.|+|+|++|+|||||++.+...
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3333345668999999999999999999864
No 470
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.25 E-value=0.0094 Score=57.50 Aligned_cols=29 Identities=7% Similarity=0.069 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
..+..|.|.|.+||||||++++|+..++.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999999874
No 471
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.24 E-value=0.0023 Score=60.62 Aligned_cols=18 Identities=17% Similarity=-0.021 Sum_probs=16.1
Q ss_pred CCcccccCCCCCCCeeee
Q psy13773 245 GPNSAPANESGTGGILLM 262 (299)
Q Consensus 245 ~s~~l~~g~~gtg~~ll~ 262 (299)
-..+++|||||||||.|+
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999986
No 472
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.23 E-value=0.011 Score=47.49 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
.-.|+++|++|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999874
No 473
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.23 E-value=0.01 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
-.|+++|++|+|||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 474
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.23 E-value=0.01 Score=49.37 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=24.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhhcCCeeccc
Q psy13773 24 VLFYGPPGCGKTLLAKAIANECQANFISVK 53 (299)
Q Consensus 24 vLL~Gp~GsGKTtLlr~La~~l~~~~i~i~ 53 (299)
++++|++|||||+++..++.. +...+++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yia 30 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIA 30 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEe
Confidence 789999999999999999987 65666665
No 475
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.22 E-value=0.011 Score=46.74 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
-.++++|++|+|||||++.+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999873
No 476
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.20 E-value=0.013 Score=50.39 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhcC
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQA 47 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~~ 47 (299)
..+..|.|.|++||||||+++.|+..+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45778899999999999999999997754
No 477
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.18 E-value=0.011 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
..|+|.|++|+|||||++++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999975
No 478
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.17 E-value=0.0097 Score=47.27 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q psy13773 23 GVLFYGPPGCGKTLLAKAIAN 43 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~ 43 (299)
.|+|+|++|+|||||++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999975
No 479
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.17 E-value=0.013 Score=55.36 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=27.1
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 16 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 16 l~i~~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
.++.++..++|.|+||+|||+|+..+|...
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999998754
No 480
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.17 E-value=0.011 Score=46.66 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
-.|+++|++|+|||||++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999873
No 481
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.17 E-value=0.00081 Score=61.60 Aligned_cols=33 Identities=12% Similarity=-0.101 Sum_probs=26.4
Q ss_pred CCCCCC---CCCCCCCCCCcccccCCCCCCCeeeec
Q psy13773 231 NFRFPS---NPNQSQSGGPNSAPANESGTGGILLMF 263 (299)
Q Consensus 231 Plk~Pe---~~~~~~~k~s~~l~~g~~gtg~~ll~~ 263 (299)
|+-.|+ +..-|+.+.+-+++|||||+|||.|..
T Consensus 105 ~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 105 TTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp CCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred ecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 555554 445688999999999999999998864
No 482
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.16 E-value=0.016 Score=47.36 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHh
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
.....|+|+|++|+|||||++.+.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999874
No 483
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.15 E-value=0.0036 Score=64.55 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=44.0
Q ss_pred HHhhhcccCCHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcccccHH
Q psy13773 117 ELQELVQDVDLNY--IAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRA 194 (299)
Q Consensus 117 R~~~l~~~v~l~~--LA~~t~glSggDl~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 194 (299)
+...+++.+++.. +.+....||||+.|+|....++.. .+.-...+..+|+....++.+.+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~------------------~p~~p~lLILDEPTsGLD~~~~~ 885 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHR------------------RSNGRTLYILDEPTTGLHVDDIA 885 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSS------------------CCCSCEEEEEECTTTTCCHHHHH
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhc------------------CCCCCCEEEEECCCCCCCHHHHH
Confidence 4456677777754 445667899999999987654431 01001234466777777777777
Q ss_pred HHHHHHHhc
Q psy13773 195 HFEEAMRFA 203 (299)
Q Consensus 195 Df~~AL~~~ 203 (299)
.+.+.|++.
T Consensus 886 ~l~~lL~~L 894 (972)
T 2r6f_A 886 RLLDVLHRL 894 (972)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777665
No 484
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.13 E-value=0.012 Score=47.75 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
-.|+|+|++|+|||||++.+.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999973
No 485
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.12 E-value=0.011 Score=50.72 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
...|+|+|++|+|||||+++|.+..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCC
Confidence 3578999999999999999999843
No 486
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.12 E-value=0.012 Score=47.23 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
..|+++|++|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 487
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.11 E-value=0.0033 Score=56.47 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=16.2
Q ss_pred CCCcccccCCCCCCCeeee
Q psy13773 244 GGPNSAPANESGTGGILLM 262 (299)
Q Consensus 244 k~s~~l~~g~~gtg~~ll~ 262 (299)
....+|+|||||||||++.
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 3568999999999999873
No 488
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.09 E-value=0.012 Score=47.10 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
-.|+++|++|+|||||++.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 489
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.09 E-value=0.015 Score=53.15 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=26.9
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 17 GMQPSRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 17 ~i~~~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
++.++..++|.|+||+|||||+..+|...
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999998854
No 490
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.08 E-value=0.012 Score=47.87 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
.-.|+++|++|+|||||++.+.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999985
No 491
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.07 E-value=0.015 Score=49.53 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
+..|.|.|++||||||+++.|+..+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999775
No 492
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.06 E-value=0.014 Score=54.93 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 20 PSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 20 ~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
++..++++|++|+||||++..||..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999999999765
No 493
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.05 E-value=0.0039 Score=49.95 Aligned_cols=19 Identities=26% Similarity=0.221 Sum_probs=16.6
Q ss_pred CCCcccccCCCCCCCeeee
Q psy13773 244 GGPNSAPANESGTGGILLM 262 (299)
Q Consensus 244 k~s~~l~~g~~gtg~~ll~ 262 (299)
+...++++||+|+|||.|+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4568999999999999876
No 494
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.05 E-value=0.013 Score=46.25 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q psy13773 23 GVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 23 ~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
.++++|++|+|||||++.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999863
No 495
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.04 E-value=0.013 Score=47.34 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
-.|+++|++|+|||||++.+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 496
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.03 E-value=0.013 Score=47.95 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
-.|+|+|++|+|||||++.+.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 497
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.03 E-value=0.013 Score=46.94 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
-.|+++|++|+|||||++.+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 498
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.02 E-value=0.013 Score=46.79 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhh
Q psy13773 21 SRGVLFYGPPGCGKTLLAKAIANEC 45 (299)
Q Consensus 21 ~~~vLL~Gp~GsGKTtLlr~La~~l 45 (299)
.-.|+++|++|+|||||++.+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998743
No 499
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.02 E-value=0.013 Score=47.17 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHh
Q psy13773 22 RGVLFYGPPGCGKTLLAKAIANE 44 (299)
Q Consensus 22 ~~vLL~Gp~GsGKTtLlr~La~~ 44 (299)
..|+|+|++|+|||||++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999874
No 500
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.00 E-value=0.011 Score=56.17 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHHhhc
Q psy13773 19 QPSRGVLFYGPPGCGKTLLAKAIANECQ 46 (299)
Q Consensus 19 ~~~~~vLL~Gp~GsGKTtLlr~La~~l~ 46 (299)
..+..|+|+|.+||||||+++.|+..++
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456789999999999999999999775
Done!