RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13773
(299 letters)
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 165 bits (421), Expect = 6e-50
Identities = 43/71 (60%), Positives = 51/71 (71%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
PV +P++F G+ GVL GPPGCGKTLLAKA+ANE NFISVKGPELL M+ GE
Sbjct: 28 APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGE 87
Query: 65 SEANVRDIFDK 75
SE VR +F +
Sbjct: 88 SERAVRQVFQR 98
Score = 84.5 bits (210), Expect = 2e-19
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 21/93 (22%)
Query: 121 LVQDVDLNYIAK--VTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAA 178
L DV+L IA + ++GADL+ + + A A+RQ +
Sbjct: 199 LDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR------------------ 240
Query: 179 METEDEDDPVPEITRAHFEEAMRFARRSVNDAD 211
+ + +++ HFEEA + R S++ D
Sbjct: 241 -QKSGNEKGELKVSHKHFEEAFKKVRSSISKKD 272
Score = 55.6 bits (135), Expect = 4e-09
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 98 VEVPNITWEDIGGLEGVKRELQELVQ 123
+ VPN+TW DIG LE ++ EL +
Sbjct: 2 MTVPNVTWADIGALEDIREELTMAIL 27
Score = 27.5 bits (62), Expect = 4.5
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 62 FGESEANVRDIFDKVTMENFRYAMGKSSPSALRE 95
++ KV+ ++F A K S ++
Sbjct: 238 MARQKSGNEKGELKVSHKHFEEAFKKVRSSISKK 271
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 165 bits (419), Expect = 2e-49
Identities = 66/71 (92%), Positives = 70/71 (98%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMWFGE
Sbjct: 33 YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 92
Query: 65 SEANVRDIFDK 75
SEANVR+IFDK
Sbjct: 93 SEANVREIFDK 103
Score = 117 bits (296), Expect = 2e-31
Identities = 75/103 (72%), Positives = 85/103 (82%), Gaps = 5/103 (4%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
+ +DVDL ++AK+TNGFSGADLTEICQRACKLAIR+SIE+EIRRERE+ A
Sbjct: 204 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSA-----M 258
Query: 181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQ 223
+EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQ
Sbjct: 259 EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301
Score = 65.7 bits (161), Expect = 2e-12
Identities = 28/32 (87%), Positives = 30/32 (93%)
Query: 92 ALRETIVEVPNITWEDIGGLEGVKRELQELVQ 123
ALRET+VEVP +TWEDIGGLE VKRELQELVQ
Sbjct: 1 ALRETVVEVPQVTWEDIGGLEDVKRELQELVQ 32
Score = 33.8 bits (78), Expect = 0.054
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 11/57 (19%)
Query: 63 GESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQ 119
E D ++ ++F AM + S ++ DI E + LQ
Sbjct: 256 SAMEVEEDDPVPEIRRDHFEEAMRFARRS-----------VSDNDIRKYEMFAQTLQ 301
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 155 bits (394), Expect = 7e-43
Identities = 66/71 (92%), Positives = 70/71 (98%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMWFGE
Sbjct: 495 YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 554
Query: 65 SEANVRDIFDK 75
SEANVR+IFDK
Sbjct: 555 SEANVREIFDK 565
Score = 129 bits (326), Expect = 9e-34
Identities = 90/141 (63%), Positives = 105/141 (74%), Gaps = 12/141 (8%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
+ +DVDL ++AK+TNGFSGADLTEICQRACKLAIR+SIE+EIRRERE+ + +
Sbjct: 666 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERER-----QTNPSAM 720
Query: 181 TEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFRFPS---- 236
+EDDPVPEI R HFEEAMRFARRSV+D DIRKYEMFAQTLQQSRGFG +FRFPS
Sbjct: 721 EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPSGNQG 779
Query: 237 --NPNQSQSGGPNSAPANESG 255
P+Q GG + E
Sbjct: 780 GAGPSQGSGGGTGGSVYTEDN 800
Score = 108 bits (272), Expect = 1e-26
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 9/89 (10%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
P+ HP F G++P RG+L YGPPG GKTL+A+A+ANE A F + GPE+++ GE
Sbjct: 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281
Query: 65 SEANVRDIFDKVTMENFRYAMGKSSPSAL 93
SE+N+R F++ K++P+ +
Sbjct: 282 SESNLRKAFEEAE---------KNAPAII 301
Score = 79.5 bits (196), Expect = 1e-16
Identities = 37/49 (75%), Positives = 45/49 (91%)
Query: 75 KVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQ 123
VTM++FR+A+ +S+PSALRET+VEVP +TWEDIGGLE VKRELQELVQ
Sbjct: 446 AVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQ 494
Score = 60.6 bits (147), Expect = 2e-10
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 17/114 (14%)
Query: 94 RETIVEVPNITW-EDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKL 152
RE + +P+ T +I L+ + ++ L DVDL +A T+G GADL +C A
Sbjct: 365 REVDIGIPDATGRLEI--LQIHTKNMK-LADDVDLEQVANETHGHVGADLAALCSEAALQ 421
Query: 153 AIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRS 206
AIR+ ++ + E +T F A+ + S
Sbjct: 422 AIRKKMDL-------------IDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462
Score = 47.9 bits (114), Expect = 2e-06
Identities = 6/37 (16%), Positives = 18/37 (48%)
Query: 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQ 123
+ P + + + ++D+GG +++E+V+
Sbjct: 185 EGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVE 221
Score = 39.0 bits (91), Expect = 0.001
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 11/59 (18%)
Query: 64 ESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELV 122
E D ++ ++F AM + S ++ DI E + LQ+
Sbjct: 719 AMEVEEDDPVPEIRRDHFEEAMRFARRS-----------VSDNDIRKYEMFAQTLQQSR 766
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 132 bits (333), Expect = 2e-36
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
PV+ P F K +P+ G+L YGPPG GK+ LAKA+A E + F SV +L++ W GE
Sbjct: 36 LPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 94
Query: 65 SEANVRDIFDK 75
SE V+ +F
Sbjct: 95 SEKLVKQLFAM 105
Score = 105 bits (265), Expect = 8e-27
Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 13/115 (11%)
Query: 124 DVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNP---------- 173
D + +T G+SG+D+ + + A IR+ ++
Sbjct: 206 KEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGD 265
Query: 174 ---AASAAMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQS 225
+ + E ++ P++T F +A++ R +VN+ D+ K E F + Q
Sbjct: 266 DGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320
Score = 57.7 bits (140), Expect = 8e-10
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 93 LRETIVEVPNITWEDIGGLEGVKRELQELVQ 123
+ E PN+ WED+ GLEG K L+E V
Sbjct: 5 FTAILSEKPNVKWEDVAGLEGAKEALKEAVI 35
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 122 bits (307), Expect = 9e-33
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFG 63
P++ P F P RG+L +GPPG GK+ LAKA+A E + F S+ +L++ W G
Sbjct: 30 LPIKFPHLF-TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG 88
Query: 64 ESEANVRDIFDK 75
ESE V+++F
Sbjct: 89 ESEKLVKNLFQL 100
Score = 97.8 bits (244), Expect = 8e-24
Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 19/116 (16%)
Query: 124 DVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAA----- 178
+ D + + T+G+SGAD++ I + A +R+ ++ +
Sbjct: 201 EADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLT 260
Query: 179 --------------METEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQ 220
M+ + P ++ + ++ + +VN+ D+ K + F +
Sbjct: 261 PCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTE 316
Score = 51.6 bits (124), Expect = 8e-08
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 97 IVEVPNITWEDIGGLEGVKRELQELVQ 123
++E PN+ W D+ GLEG K L+E V
Sbjct: 3 VIERPNVKWSDVAGLEGAKEALKEAVI 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 117 bits (296), Expect = 2e-31
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 5 YPVEHPEKFLKF-GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 63
V + FLK ++ + +G G GK+ + + + N I + EL + G
Sbjct: 19 LVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAG 78
Query: 64 ESEANVRDIFDKVTMENFRYAM 85
E +R + + + M
Sbjct: 79 EPAKLIRQRYREAAEIIRKGNM 100
Score = 45.2 bits (107), Expect = 1e-05
Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 15/84 (17%)
Query: 124 DVDLNYIAKVTNGFSGADLTEIC---QRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
+V + K+ + F G + R +R+ + + +
Sbjct: 202 NVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGD---------KLL 252
Query: 181 TEDEDDPV---PEITRAHFEEAMR 201
+ P P++T E
Sbjct: 253 NSFDGPPTFEQPKMTIEKLLEYGN 276
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 116 bits (292), Expect = 5e-31
Identities = 38/69 (55%), Positives = 49/69 (71%)
Query: 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
P++HPE F K G++P +G+L YGPPG GKTLLAKA+A E A FI V G EL+ + GE
Sbjct: 36 PLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEG 95
Query: 66 EANVRDIFD 74
+ V+DIF
Sbjct: 96 ASLVKDIFK 104
Score = 43.8 bits (104), Expect = 3e-05
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIR 155
L +DV+L IAK+T G GA+L IC A AIR
Sbjct: 206 LAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIR 240
Score = 41.5 bits (98), Expect = 2e-04
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 96 TIVEVPNITWEDIGGLEGVKRELQELV 122
+ E PN+ +EDIGGLE +E++E+V
Sbjct: 7 EVDERPNVRYEDIGGLEKQMQEIREVV 33
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 117 bits (295), Expect = 4e-30
Identities = 35/70 (50%), Positives = 50/70 (71%)
Query: 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
P+ HP F G++P RG+L YGPPG GKTL+A+A+ANE A F + GPE+++ GES
Sbjct: 223 PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES 282
Query: 66 EANVRDIFDK 75
E+N+R F++
Sbjct: 283 ESNLRKAFEE 292
Score = 80.6 bits (199), Expect = 3e-17
Identities = 25/41 (60%), Positives = 33/41 (80%)
Query: 75 KVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVK 115
VTM++FR+A+ +S+PSALRET+VEVP +TWEDIGG
Sbjct: 446 AVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSHHH 486
Score = 58.7 bits (142), Expect = 6e-10
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
L DVDL +A T+G GADL +C A AIR+ ++ I E E + S
Sbjct: 390 LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD-LIDLEDETIDAEVMNS---- 444
Query: 181 TEDEDDPVPEITRAHFEEAMR 201
+T F A+
Sbjct: 445 --------LAVTMDDFRWALS 457
Score = 45.6 bits (108), Expect = 1e-05
Identities = 7/49 (14%), Positives = 18/49 (36%)
Query: 74 DKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELV 122
+ + P + + + ++DIGG +++E+V
Sbjct: 172 PYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMV 220
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 112 bits (281), Expect = 6e-29
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
PV+ P F K +P+ G+L YGPPG GK+ LAKA+A E + F SV +L++ W GE
Sbjct: 69 LPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 127
Query: 65 SEANVRDIFDK 75
SE V+ +F
Sbjct: 128 SEKLVKQLFAM 138
Score = 103 bits (259), Expect = 8e-26
Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 13/123 (10%)
Query: 116 RELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGN--- 172
+ ++ D + +T G+SG+D+ + + A IR+ ++
Sbjct: 231 GDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRK 290
Query: 173 ----------PAASAAMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTL 222
+ + E ++ P++T F +A++ R +VN+ D+ K E F +
Sbjct: 291 LTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDF 350
Query: 223 QQS 225
Q
Sbjct: 351 GQE 353
Score = 60.2 bits (146), Expect = 1e-10
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 63 GESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELV 122
S + I + +N K + + E PN+ WED+ GLEG K L+E V
Sbjct: 8 SGSNGGNKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAV 67
Query: 123 Q 123
Sbjct: 68 I 68
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 108 bits (271), Expect = 9e-28
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
P PE F P++G+L +GPPG GKTLLA+A+A EC A F+++ L + + G+
Sbjct: 39 LPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGD 97
Query: 65 SEANVRDIFDK 75
E VR +F
Sbjct: 98 GEKLVRALFAV 108
Score = 71.6 bits (176), Expect = 1e-14
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 18/97 (18%)
Query: 124 DVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETED 183
L +AK+T+G+SG+DLT + + A IR+ +++
Sbjct: 211 TEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK------------------CL 252
Query: 184 EDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQ 220
+ + IT F +++ RRSV + YE ++Q
Sbjct: 253 DISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQ 289
Score = 50.8 bits (122), Expect = 2e-07
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 90 PSALRETIVEVPNITWEDIGGLEGVKRELQELV 122
L E + + W DI G + K+ LQE+V
Sbjct: 5 QLILDEIVEGGAKVEWTDIAGQDVAKQALQEMV 37
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 106 bits (265), Expect = 1e-26
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
+P+ P+ F P +G+L +GPPG GKTL+ K IA++ A F S+ L + W GE
Sbjct: 102 WPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGE 160
Query: 65 SEANVRDIFDK 75
E VR +F
Sbjct: 161 GEKMVRALFAV 171
Score = 71.7 bits (176), Expect = 2e-14
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 124 DVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETED 183
+ ++ I + ++ FSGAD+T++C+ A IR +I
Sbjct: 273 EEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI------------------ATI 314
Query: 184 EDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQ 220
D V I FE A R R SV+ D+ YE + +
Sbjct: 315 TPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNK 351
Score = 49.0 bits (117), Expect = 7e-07
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 93 LRETIVEVPNITWEDIGGLEGVKRELQELV 122
+ E + P + WEDI G+E K ++E+V
Sbjct: 71 MNEIMDHGPPVNWEDIAGVEFAKATIKEIV 100
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 103 bits (258), Expect = 2e-25
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
P PE F P+RG+L +GPPG GKT+LAKA+A E A F ++ L + + GE
Sbjct: 133 LPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGE 191
Query: 65 SEANVRDIFDK 75
E VR +F
Sbjct: 192 GEKLVRALFAV 202
Score = 70.2 bits (172), Expect = 7e-14
Identities = 19/97 (19%), Positives = 42/97 (43%), Gaps = 18/97 (18%)
Query: 124 DVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETED 183
+L +A++T+G+SG+DLT + + A IR+ +++
Sbjct: 304 QKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVK------------------NM 345
Query: 184 EDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQ 220
+ I + F E+++ +RSV+ + Y + +
Sbjct: 346 SASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNK 382
Score = 52.9 bits (127), Expect = 4e-08
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 75 KVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELV 122
K ++NFR + + E + + ++DI G + K+ LQE+V
Sbjct: 84 KKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIV 131
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 102 bits (255), Expect = 9e-25
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFG 63
P++ P F P RG+L +GPPG GK+ LAKA+A E + F S+ +L++ W G
Sbjct: 152 LPIKFPHLF-TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG 210
Query: 64 ESEANVRDIFDK 75
ESE V+++F
Sbjct: 211 ESEKLVKNLFQL 222
Score = 93.5 bits (232), Expect = 1e-21
Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 19/116 (16%)
Query: 124 DVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAA----- 178
+ D + + T+G+SGAD++ I + A +R+ ++ +
Sbjct: 323 EADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLT 382
Query: 179 --------------METEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQ 220
M+ + P ++ ++ + +VN+ D+ K + F +
Sbjct: 383 PCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTE 438
Score = 54.6 bits (131), Expect = 1e-08
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 84 AMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQ 123
K ++E PN+ W D+ GLEG K L+E V
Sbjct: 112 EKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVI 151
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 93.3 bits (232), Expect = 2e-22
Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 23/121 (19%)
Query: 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
V+ + + P VL GPP GKT LA IA E FI + P+ + + +
Sbjct: 52 LVQQTKNSDRT---PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA 108
Query: 66 EAN-VRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNI----TWEDIGGLEGVKRELQE 120
+ ++ IFD KS S V V +I + IG LQ
Sbjct: 109 KCQAMKKIFDDAY---------KSQLS-----CVVVDDIERLLDYVPIGP-RFSNLVLQA 153
Query: 121 L 121
L
Sbjct: 154 L 154
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 78.0 bits (191), Expect = 3e-16
Identities = 46/272 (16%), Positives = 90/272 (33%), Gaps = 72/272 (26%)
Query: 2 ISTYPVEHPEKFLK-----FGMQPSRGVLFYGPPGCGKTLLAKAIAN----ECQANF--- 49
+ Y V + +LK ++P++ VL G G GKT +A + +C+ +F
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 50 -ISV---KGPE-----LLTMWF---------GESEANVRDIFDKVTMENFRYAMGKSSPS 91
+++ PE L + + + +N++ + E R K +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 92 ALRETIV--EV--PNITWE--DIGGLEGVKRELQELV--QDVDLNYIAKVTNGFSGADLT 143
L +V V W ++ + L+ + +VT+ S A T
Sbjct: 246 CL---LVLLNVQNAKA-WNAFNLS--------CKILLTTRF------KQVTDFLSAATTT 287
Query: 144 EIC--QRACKLAIRQSIE-----TEIRRE---REKLAGNP-AAS--AAMETEDED--DPV 188
I + L + + R + RE L NP S A + D
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 189 PEITRAHFEEAMRFARRSVNDADIRK-YEMFA 219
+ + + + A+ RK ++ +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Score = 36.8 bits (84), Expect = 0.010
Identities = 21/160 (13%), Positives = 42/160 (26%), Gaps = 48/160 (30%)
Query: 104 TWEDIGGLEGVKRELQELVQDVDLNYIAKVTNG-FSGADLTEICQRACKLAIRQSIETEI 162
++DI + V + D + + S ++ I + +
Sbjct: 17 QYKDI-----LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM-------SKDAVSGT 64
Query: 163 RREREKL--AGNPAASAAMETEDEDD------PV------PEITRAHFEEAM-------- 200
R L +E + P+ P + + E
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 201 RFARRSVNDADIRKYEMFAQTLQQSR-----------GFG 229
FA+ +V+ ++ Y Q L + R G G
Sbjct: 125 VFAKYNVS--RLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Score = 30.2 bits (67), Expect = 1.1
Identities = 43/232 (18%), Positives = 73/232 (31%), Gaps = 80/232 (34%)
Query: 43 NECQANFI-------SVKGPE--LLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPS-- 91
E + F S P L +WF +++V + +K + + + S
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--LHKYSLVEKQPKESTI 426
Query: 92 -----------------ALRETIVEVPNIT-----------WED------IG-GLEGVKR 116
AL +IV+ NI + D IG L+ ++
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 117 -ELQELVQDV--DLNYI-AKVTN--------GFSGADLTE-------ICQRACKL-AIRQ 156
E L + V D ++ K+ + G L + IC K +
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 157 SIETEIRREREKLAGNPAAS---AAMETEDEDDPVPEITRAHFEEAMRFARR 205
+I + + E L + A+ EDE A FEEA + +R
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDE---------AIFEEAHKQVQR 589
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 75.0 bits (185), Expect = 6e-16
Identities = 31/66 (46%), Positives = 42/66 (63%)
Query: 9 HPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN 68
PE+FL+ G + +G L GPPGCGKTLLAKA+A E Q F+++ G E + + G A
Sbjct: 27 SPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAAR 86
Query: 69 VRDIFD 74
VR +F
Sbjct: 87 VRSLFK 92
Score = 35.7 bits (83), Expect = 0.011
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 121 LVQDVDL--NYIAKVTNGFSGADLTEICQRACKLAIRQS 157
L Q +A++T GFSGAD+ IC A A R+
Sbjct: 195 LTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG 233
Score = 28.0 bits (63), Expect = 3.9
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 102 NITWEDIGGLEGVKRELQELVQ 123
++++D+ G+ K E++E V
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVD 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 74.6 bits (184), Expect = 8e-16
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 9 HPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN 68
+PE++ G + +GVL GPPG GKTLLAKA+A E F S+ G + M+ G +
Sbjct: 32 YPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASR 91
Query: 69 VRDIFDK 75
VRD+F+
Sbjct: 92 VRDLFET 98
Score = 40.7 bits (96), Expect = 3e-04
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 94 RETIVEVPNITWEDIGGLEG---VKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRAC 150
R+ +V+ P D G V + +L DV+L +AK+T G +GADL I A
Sbjct: 176 RQVLVDKP-----DFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAA 230
Query: 151 KLAIRQS 157
LA R +
Sbjct: 231 LLAGRNN 237
Score = 28.0 bits (63), Expect = 4.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 99 EVPNITWEDIGGLEGVKRELQELVQ 123
E PN+ ++D+ G E K E+ E+V
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVEIVD 28
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 74.3 bits (183), Expect = 8e-16
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 9 HPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN 68
P +F K G + +GVL GPPG GKTLLAKAIA E + F ++ G + + M+ G +
Sbjct: 33 EPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASR 92
Query: 69 VRDIFDK 75
VRD+F++
Sbjct: 93 VRDMFEQ 99
Score = 41.2 bits (97), Expect = 2e-04
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 94 RETIVEVPNITWEDIGGLEG---VKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRAC 150
R+ +V +P D+ G E V L D+D IA+ T GFSGADL + A
Sbjct: 175 RQVVVGLP-----DVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAA 229
Query: 151 KLAIRQS 157
A R +
Sbjct: 230 LFAARGN 236
Score = 27.3 bits (61), Expect = 6.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 101 PNITWEDIGGLEGVKRELQELVQ 123
T+ D+ G + K E+ ELV+
Sbjct: 7 IKTTFADVAGCDEAKEEVAELVE 29
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 73.9 bits (182), Expect = 1e-15
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 9 HPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN 68
+P +F + G + +GVL GPPG GKT LA+A+A E + FI+ G + + M+ G A
Sbjct: 37 NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAAR 96
Query: 69 VRDIFDK 75
VRD+F+
Sbjct: 97 VRDLFET 103
Score = 40.8 bits (96), Expect = 3e-04
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 94 RETIVEVPNITWEDIGGLEG---VKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRAC 150
R+ ++ P D+ G E + + L +DVDL +AK T GF GADL + A
Sbjct: 179 RQIAIDAP-----DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAA 233
Query: 151 KLAIRQS 157
LA R+
Sbjct: 234 LLAAREG 240
Score = 27.3 bits (61), Expect = 5.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 99 EVPNITWEDIGGLEGVKRELQELVQ 123
E P +T++D+ G E K EL+E+V+
Sbjct: 9 EAPKVTFKDVAGAEEAKEELKEIVE 33
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 73.2 bits (180), Expect = 3e-15
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 10 PEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANV 69
P +F + G + +GVL GPPG GKT LA+A+A E + FI+ G + + M+ G A V
Sbjct: 62 PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARV 121
Query: 70 RDIFDK 75
RD+F+
Sbjct: 122 RDLFET 127
Score = 40.4 bits (95), Expect = 4e-04
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 94 RETIVEVPNITWEDIGGLEG---VKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRAC 150
R+ ++ P D+ G E + + L +DVDL +AK T GF GADL + A
Sbjct: 203 RQIAIDAP-----DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAA 257
Query: 151 KLAIRQS 157
LA R+
Sbjct: 258 LLAAREG 264
Score = 28.9 bits (65), Expect = 2.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 86 GKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQ 123
KS L E P +T++D+ G E K EL+E+V+
Sbjct: 24 TKSRARVLTEA----PKVTFKDVAGAEEAKEELKEIVE 57
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 69.9 bits (172), Expect = 1e-13
Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 9 HPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN 68
P KF + G + +G+L GPPG GKTLLA+A+A E F + G + + ++ G A
Sbjct: 37 DPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAAR 96
Query: 69 VRDIFDK 75
VRD+F +
Sbjct: 97 VRDLFAQ 103
Score = 39.9 bits (94), Expect = 6e-04
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQS 157
L +DV+L IAK T GF GADL + A LA R+
Sbjct: 204 LAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG 240
Score = 27.1 bits (61), Expect = 8.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 101 PNITWEDIGGLEGVKRELQELV 122
+T++D+GG E EL+E+V
Sbjct: 11 KRVTFKDVGGAEEAIEELKEVV 32
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 69.5 bits (171), Expect = 2e-13
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 9 HPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN 68
+P +F + G + +GVL GPPG GKT LA+A+A E + FI+ G + + M+ G A
Sbjct: 52 NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAAR 111
Query: 69 VRDIFD 74
VRD+F+
Sbjct: 112 VRDLFE 117
Score = 39.9 bits (94), Expect = 8e-04
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQS 157
L +DVDL +AK T GF GADL + A LA R+
Sbjct: 219 LAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 255
Score = 27.9 bits (63), Expect = 4.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 99 EVPNITWEDIGGLEGVKRELQELV 122
E P +T++D+ G E K EL+E+V
Sbjct: 24 EAPKVTFKDVAGAEEAKEELKEIV 47
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 53.8 bits (129), Expect = 2e-08
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE--CQANFISVKGPELLTMWFGESEANV 69
+ +K R VL GPPG GKT LA AIA E + F + G E+ + ++E
Sbjct: 54 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE--- 110
Query: 70 RDIFDKVTMENFRYAMG 86
V MENFR A+G
Sbjct: 111 ------VLMENFRRAIG 121
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 51.0 bits (122), Expect = 2e-07
Identities = 34/182 (18%), Positives = 66/182 (36%), Gaps = 26/182 (14%)
Query: 8 EHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFI----S-VKGPELLTMWF 62
+ K G R + YGPPG GKT A +A E + + S V+ LL
Sbjct: 64 NSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLL---- 119
Query: 63 GESEANVRDIFDKVTMENFRYAMGKSSPSALRETIV---EVPNITWEDIGGLEGVKRELQ 119
A V++ D +++ + ++ + ++ EV ++ D GG+ +L
Sbjct: 120 ---NAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGV----GQLA 172
Query: 120 ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRR------EREKLAGNP 173
+ + + + N + + + + R+ I+ REK +P
Sbjct: 173 QFCRKTS-TPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP 231
Query: 174 AA 175
Sbjct: 232 NV 233
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding;
HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 48.1 bits (115), Expect = 4e-07
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN------FISVKGPELL 58
F + +G+ F G PG GKT LA A F +L+
Sbjct: 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT--KDLI 79
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 49.8 bits (120), Expect = 5e-07
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISV 52
++ +GPPG GKT LA+ IA A+ +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERI 81
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 48.1 bits (115), Expect = 6e-07
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 17/92 (18%)
Query: 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVT 77
+ +G+ +G G GKT L AIANE +S V ++F +
Sbjct: 51 GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSL--------I----VYVPELFRE-- 96
Query: 78 MENFRYAMGKSSPSALRETIVEVPNITWEDIG 109
++++ + + + I +VP + +D+G
Sbjct: 97 ---LKHSLQDQTMNEKLDYIKKVPVLMLDDLG 125
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 49.1 bits (118), Expect = 7e-07
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57
+LF GP G GKT LA I+ E AN + P +
Sbjct: 58 ILFSGPAGLGKTTLANIISYEMSANIKTTAAPMI 91
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker
B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 49.1 bits (118), Expect = 7e-07
Identities = 19/34 (55%), Positives = 20/34 (58%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57
VL GPPG GKT LA IA+E Q N GP L
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 48.6 bits (115), Expect = 9e-07
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 7 VEHPEKFLKFGM---QPSRGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKGPE 56
+ K G+ P+ + F G PG GKT +A +A + +SV +
Sbjct: 50 LLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109
Query: 57 LLTMWFGESEANVRDIFDK 75
L+ + G + +++ +
Sbjct: 110 LVGQYIGHTAPKTKEVLKR 128
Score = 27.4 bits (60), Expect = 5.7
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 95 ETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY 129
EV ++ GL+ VK ++E + +
Sbjct: 20 SGAKEVLEELDRELIGLKPVKDRIRETAALLLVER 54
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 48.3 bits (116), Expect = 1e-06
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57
+L +GPPG GKT LA IA+E N GP +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI 74
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast
structural genomics consortium (NESG), target HR3102A,
PSI-2; NMR {Homo sapiens}
Length = 86
Score = 44.8 bits (107), Expect = 1e-06
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIR 155
L + ++L IA++ G SGA++ +C A A+R
Sbjct: 29 LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR 63
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} PDB: 2dzo_B
Length = 82
Score = 44.7 bits (106), Expect = 1e-06
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQ 156
L + DL+ + + SGA + I Q A A+R+
Sbjct: 16 LAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 51
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone,
chaperone-protein binding complex; HET: DNA; 3.80A
{Saccharomyces cerevisiae} PDB: 4a3v_B*
Length = 88
Score = 44.5 bits (106), Expect = 2e-06
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIR 155
+ + + I+++ +GA+L +C A AIR
Sbjct: 19 VERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 53
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 47.5 bits (113), Expect = 2e-06
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 18/96 (18%)
Query: 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMWFGESEANVRDIF 73
++ +G+ YG G GK+ L A+A+E + +S +
Sbjct: 146 QYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTT--------L----LHFPSFA 193
Query: 74 DKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIG 109
V + A+ S + + VP + +DIG
Sbjct: 194 IDV-----KNAISNGSVKEEIDAVKNVPVLILDDIG 224
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Homo sapiens}
Length = 78
Score = 43.6 bits (104), Expect = 2e-06
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIR 155
L + ++L IA++ G SGA++ +C A A+R
Sbjct: 21 LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR 55
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin,
S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B*
2dvw_B*
Length = 83
Score = 43.8 bits (104), Expect = 2e-06
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 30/81 (37%)
Query: 121 LVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAME 180
L ++VDL + SGAD+ ICQ + LA+R R
Sbjct: 19 LSEEVDLEDYVARPDKISGADINSICQESGMLAVR--------ENRYI------------ 58
Query: 181 TEDEDDPVPEITRAHFEEAMR 201
+ FE+A +
Sbjct: 59 ----------VLAKDFEKAYK 69
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 43.4 bits (102), Expect = 2e-05
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFIS 51
GMQ ++ G P GKT L++A+A + +S
Sbjct: 1 GMQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 43.9 bits (103), Expect = 3e-05
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 22 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGP-ELLTMWFGESEANVRDIFDKVTME 79
R LF GP GKT LA A+ C ++V P + L G + +F+ V
Sbjct: 170 RYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGT 228
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 4e-05
Identities = 51/312 (16%), Positives = 95/312 (30%), Gaps = 114/312 (36%)
Query: 54 GPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEG 113
G +L + S+A +D++++ +F+ G S + + ++ P GG +G
Sbjct: 1632 GMDL----YKTSKA-AQDVWNRAD-NHFKDTYGFS----ILDIVINNPVNLTIHFGGEKG 1681
Query: 114 VK-RE----------------LQELVQDVDLNYIAKVTNGFSGA----DLTEICQRA--- 149
+ RE +++ ++++ + T F T+ Q A
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEH-STSYT--FRSEKGLLSATQFTQPALTL 1738
Query: 150 CKLAIRQSIETE-IRREREKLAGNP-------AASA-AMETEDEDDPVPEITRAHFEEAM 200
+ A + ++++ + AG+ A+ A M E +
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS---------------IESLV 1783
Query: 201 R--FAR-RSVNDADIR------KYEMFAQTLQQSRGFGTNFRFPSNPNQSQSGGPNSAPA 251
F R ++ A R Y M A NP + + A
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGMIA----------------INPGRVAASFSQEALQ 1827
Query: 252 N-----ESGTGGILLMFPSN---PNQSQ--SGGPNSA------PANESGTGGI----LQ- 290
TG ++ N NQ Q + G A N I LQ
Sbjct: 1828 YVVERVGKRTGWLV--EIVNYNVENQ-QYVAAGDLRALDTVTNVLNFIKLQKIDIIELQK 1884
Query: 291 ----DEAEDDLY 298
+E E L+
Sbjct: 1885 SLSLEEVEGHLF 1896
Score = 36.6 bits (84), Expect = 0.011
Identities = 23/190 (12%), Positives = 45/190 (23%), Gaps = 73/190 (38%)
Query: 157 SIETEI----------RREREK-LAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205
S+E + + +E+ P + +DE E+ F + +
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV-GKF---LGYVSS 70
Query: 206 SVNDADIRKYEMFAQTLQQSRGFGTNF-----------RFPSNP---------------- 238
V + + +++ F + +
Sbjct: 71 LVEPSKVGQFDQVLNLCLTE--FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 239 -----NQSQSGGPNSA--PANESGTGGILLMFPSNPNQSQSGG--PNSAPANESGTGGIL 289
+ NSA A G ++ +F GG E L
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF---------GGQGNTDDYFEE------L 173
Query: 290 QDEAEDDLYN 299
+ DLY
Sbjct: 174 R-----DLYQ 178
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 43.0 bits (102), Expect = 4e-05
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 25 LFYGPPGCGKTLLAKAIANE 44
LF GPPG GKT A A+A +
Sbjct: 42 LFSGPPGTGKTATAIALARD 61
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 43.1 bits (102), Expect = 6e-05
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 25 LFYGPPGCGKTLLAKAIANE 44
LF GPPG GKT A A+A +
Sbjct: 42 LFSGPPGTGKTATAIALARD 61
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus}
SCOP: a.80.1.1 c.37.1.20
Length = 327
Score = 43.1 bits (102), Expect = 6e-05
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 25 LFYGPPGCGKTLLAKAIANE 44
LF GPPG GKT A A+A E
Sbjct: 50 LFAGPPGVGKTTAALALARE 69
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 40.1 bits (94), Expect = 6e-04
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 10/105 (9%)
Query: 8 EHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE----------CQANFISVKGPEL 57
EH + +K R VL G PG GK++L +A+A N P +
Sbjct: 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRI 106
Query: 58 LTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPN 102
T+ + V +K + + S + + V N
Sbjct: 107 KTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDN 151
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 37.8 bits (88), Expect = 0.003
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 11 EKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 44
KF+ G P +LFYGPPG GKT A+A E
Sbjct: 38 RKFVDEGKLPH--LLFYGPPGTGKTSTIVALARE 69
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 37.0 bits (85), Expect = 0.004
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52
+P+R V+ G G GKT +A +A+E F
Sbjct: 26 GEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEA 60
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman
fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 37.8 bits (88), Expect = 0.004
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 21 SRG-VLFYGPPGCGKTLLAKAIA 42
S V GPPG K+L+A+ +
Sbjct: 40 SGESVFLLGPPGIAKSLIARRLK 62
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 37.0 bits (86), Expect = 0.005
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 44
++ ++ K G P ++ G PG GKT +A+E
Sbjct: 30 IDRLQQIAKDGNMPH--MIISGMPGIGKTTSVHCLAHE 65
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 37.0 bits (85), Expect = 0.005
Identities = 16/115 (13%), Positives = 32/115 (27%), Gaps = 11/115 (9%)
Query: 3 STYPVEHPEKF---------LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVK 53
P E L+ ++ L G GK+ L +A NE I +
Sbjct: 4 DLRPKTRREDIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCR 63
Query: 54 GPELLTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDI 108
EL + + ++ L+ +E ++ ++
Sbjct: 64 --ELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREV 116
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 37.0 bits (85), Expect = 0.006
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 19 QPSRGVLFYGPPGCGKTLLAKAIANECQ 46
+ LF G G GKT ++K I NE +
Sbjct: 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIE 70
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 36.7 bits (85), Expect = 0.007
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 24 VLFYGPPGCGKTLLAKAIANE 44
+LFYGPPG GKT A+ E
Sbjct: 61 MLFYGPPGTGKTSTILALTKE 81
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 35.8 bits (82), Expect = 0.008
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKG 54
+R V GPPG GKT L + +++ + V G
Sbjct: 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 35.8 bits (82), Expect = 0.008
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 10 PEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISV----KGPELLTMWFGES 65
P +F + P+ +L G PG GKT L K +A++ +I+V + +L + E
Sbjct: 2 PLGSPEFMLLPN--ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEY 59
Query: 66 EANVRDI 72
+ + D
Sbjct: 60 DCPILDE 66
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 35.4 bits (81), Expect = 0.009
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM--------WFGESEAN 68
+ +L G PG GK+ +A+A+AN + +L W +S
Sbjct: 6 DLGG-NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQ 64
Query: 69 VRDIFDKVTMENFRYA 84
R I RYA
Sbjct: 65 NRMIMQIAADVAGRYA 80
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 36.2 bits (83), Expect = 0.009
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFIS 51
+ + YG G GKT + K + ++ F+
Sbjct: 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG 75
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 35.5 bits (81), Expect = 0.015
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 4/53 (7%)
Query: 11 EKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN----FISVKGPELLT 59
+L+ G PG GKT+ + + + F+ + G
Sbjct: 34 GNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 35.3 bits (81), Expect = 0.018
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE-SEANVRDIFDKVTMENFR 82
+ F GPP GK++L ++ + + +S W ++ + D T +R
Sbjct: 129 LAFIGPPNTGKSMLCNSLIHFLGGSVLSF-ANHKSHFWLASLADTRAA-LVDDATHACWR 186
Query: 83 Y 83
Y
Sbjct: 187 Y 187
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 35.2 bits (82), Expect = 0.022
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 26 FYGPPGCGKTLLAKAIA 42
GPPG GKT LAK+IA
Sbjct: 113 LAGPPGVGKTSLAKSIA 129
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 34.3 bits (79), Expect = 0.023
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 28 GPPGCGKTLLAKAIANECQANFI 50
GP C K+ +A ++ E + I
Sbjct: 8 GPDCCFKSTVAAKLSKELKYPII 30
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 35.1 bits (81), Expect = 0.023
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 23 GVLFYGPPGCGKTLLAKAIA 42
GVL +G G GK+ +A+A
Sbjct: 47 GVLVFGDRGTGKSTAVRALA 66
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 34.9 bits (80), Expect = 0.028
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 24 VLFYGPPGCGKTLLAKAIANE 44
+L YGP G GK A+
Sbjct: 39 LLLYGPNGTGKKTRCMALLES 59
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 34.3 bits (78), Expect = 0.028
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
Query: 28 GPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK 87
G G ++ K +A E +F +L + E R +K N Y +G
Sbjct: 21 REYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQFFRLADEKAGN-NLLYRLGG 79
Query: 88 SSPSALRETIVEVPNITWED 107
L +T +
Sbjct: 80 GRKIDLHSKPSPNDKLTSPE 99
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding,
transcription regulation; 2.10A {Streptomyces
avermitilis ma-4680}
Length = 190
Score = 34.0 bits (78), Expect = 0.030
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 152 LAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRSVNDAD 211
L + + +E++ + G + +E +D+ P + + M F R
Sbjct: 86 LYVFERVESQAGAPDFQ--GCRYLAVQIELKDQAHPASRVAYQIKADLMAFFRSEAERGG 143
Query: 212 IRKYEMFAQTL 222
++ A+ L
Sbjct: 144 ASDPDLLARQL 154
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A
{Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB:
1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 34.7 bits (80), Expect = 0.031
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 25 LFYGPPGCGKTLLAKAIA 42
L PG G L A++
Sbjct: 28 LIQALPGMGDDALIYALS 45
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 34.5 bits (79), Expect = 0.032
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 11 EKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE--CQANFISVKGPELLTMWFGESEA 67
+ ++ G R VL G PG GKT +A +A F ++ G E+ ++ ++EA
Sbjct: 60 LEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA 118
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 34.3 bits (78), Expect = 0.041
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 3 STYPVEHPEKFL-------KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52
T P ++ + F K + L G GK+ + K NE +I +
Sbjct: 5 DTSPKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYL 61
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 33.0 bits (76), Expect = 0.042
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 19 QPSRGVLF-YGPPGCGKTLLAKAIANECQANFISVK 53
++ +G G GK+ L +A + +
Sbjct: 33 HKHGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAA 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 34.1 bits (79), Expect = 0.051
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 25 LFYGPPGCGKTLLAKAIANE 44
LF GP G GKT + ++
Sbjct: 492 LFAGPTGVGKTEVTVQLSKA 511
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 33.9 bits (77), Expect = 0.061
Identities = 10/38 (26%), Positives = 13/38 (34%)
Query: 11 EKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN 48
+K + V GP G G T L K I +
Sbjct: 35 NIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST 72
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 33.5 bits (77), Expect = 0.071
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 11 EKFLKFGMQPSRGVLFYGP-PGCGKTLLAKAIANECQANFI 50
+ G P ++ + P PG GKT +AKA+ ++ A+ +
Sbjct: 39 KSITSKGKIPH--IILHSPSPGTGKTTVAKALCHDVNADMM 77
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 33.3 bits (77), Expect = 0.079
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 24 VLFYGPPGCGKTLLAKAIA 42
+L GP G GKTLLA+ +A
Sbjct: 54 ILLIGPTGSGKTLLAETLA 72
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 33.0 bits (75), Expect = 0.080
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 43
+ + +GP GKT +A+AIA+
Sbjct: 95 GWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 32.7 bits (74), Expect = 0.083
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFI 50
+ G G GK+ +A +A++ A F+
Sbjct: 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 33.4 bits (77), Expect = 0.086
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 24 VLFYGPPGCGKTLLAKAIA 42
+L GP G GKTL+A+ +A
Sbjct: 75 ILLIGPTGSGKTLMAQTLA 93
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 33.3 bits (77), Expect = 0.087
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 25 LFYGPPGCGKTLLAKAIA 42
+F GP G GKT LA+A+A
Sbjct: 525 IFLGPTGVGKTELARALA 542
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 33.3 bits (77), Expect = 0.088
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 21 SRG-VLFYGPPGCGKTLLAKAIANECQANF 49
+ G +L G PG KTL +A +F
Sbjct: 45 TGGHILLEGVPGLAKTLSVNTLAKTMDLDF 74
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 32.7 bits (75), Expect = 0.091
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 28 GPPGCGKTLLAKAIANECQANFISV 52
G GKT LA ++ + ISV
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGISV 53
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 32.3 bits (73), Expect = 0.093
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFR 82
++ G PG GKT L K I I E+ + E R F +T E +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEV-----RDPETKKRTGFRIITTEGKK 56
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 32.0 bits (72), Expect = 0.12
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 17 GMQPSRG--VLFYGPPGCGKTLLAKAIANECQANFI 50
M+ +G +L G PG GKT +A+ IA E
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQH 39
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 32.4 bits (73), Expect = 0.13
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 10 PEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIA 42
P ++ M P G GK++LA +A
Sbjct: 19 PLDYVLPNMVAGTVGALVSPGGAGKSMLALQLA 51
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 32.2 bits (72), Expect = 0.14
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY 83
+L G G GKT + + E Q N + + G + E K ++E +
Sbjct: 35 ILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEY--GKDSVEYTKD 92
Query: 84 AMGKSSPSALRETIVEVPNITWE 106
GK S + + N+ E
Sbjct: 93 FAGKMVESLVTKLSSLGYNLLIE 115
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 31.8 bits (72), Expect = 0.15
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 24 VLFYGPPGCGKTLLAKAIANE 44
+ GP G GK+ K +A +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQ 25
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 32.1 bits (73), Expect = 0.15
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISV 52
++ G PG GK+ +K +A N I V
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILSKNNIDV 35
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 32.9 bits (75), Expect = 0.16
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 13 FLKFGMQPSRGVLFYGPPGCGKTLLAK 39
L + R ++ GPPG GKT+
Sbjct: 1296 VLHAWLSEHRPLILCGPPGSGKTMTLT 1322
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus
thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Length = 311
Score = 32.2 bits (74), Expect = 0.16
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 25 LFYGPPGCGKTLLAKAIAN 43
LF GP G GKT LAK +A
Sbjct: 51 LFLGPTGVGKTELAKTLAA 69
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 32.2 bits (73), Expect = 0.16
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 17 GMQPSRGVLFYGPPGCGKTLLA 38
G VL G G GKT A
Sbjct: 26 GFPEGTTVLLTGGTGTGKTTFA 47
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 31.7 bits (73), Expect = 0.17
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFI 50
M R + GP G GK+ + + +A + F
Sbjct: 1 MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 31.6 bits (72), Expect = 0.20
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 28 GPPGCGKTLLAKAIANECQANFISVKGPELLTM 60
G PG GK+ L+ +A A + E++ M
Sbjct: 29 GAPGSGKSTLSNPLAAALSAQGLPA---EVVPM 58
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 32.2 bits (73), Expect = 0.21
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 17 GMQPSRGVLFYGPPGCGKTLLA 38
G+ R L G G GKTL +
Sbjct: 35 GLPIGRSTLVSGTSGTGKTLFS 56
Score = 30.7 bits (69), Expect = 0.70
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 17 GMQPSRGVLFYGPPGCGKTLLAKAIANE 44
G +L G G GKTLL
Sbjct: 277 GFFKDSIILATGATGTGKTLLVSRFVEN 304
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 31.6 bits (71), Expect = 0.22
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQAN 48
GM V+F G G GKT L + N
Sbjct: 11 GMASM-IVVFVGTAGSGKTTLTGEFGRYLEDN 41
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 31.9 bits (73), Expect = 0.23
Identities = 14/111 (12%), Positives = 35/111 (31%), Gaps = 14/111 (12%)
Query: 28 GPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME-------N 80
G G GK+ K +A + + N P ++ + T
Sbjct: 110 GTNGIGKSTALKILAGKQKPNLGRFDDP--PEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167
Query: 81 FRYAMGKSSPSALRETIVEVP-NITWEDIGGLEGVKRELQELVQDVDLNYI 130
+ + P A++ + +V + E +++ ++ + L +
Sbjct: 168 IKPQYVDNIPRAIKGPVQKVGELLKLRM----EKSPEDVKRYIKILQLENV 214
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits;
transcription/TBP-associated factors, TBP-associated
factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Length = 76
Score = 29.8 bits (67), Expect = 0.23
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 14/59 (23%)
Query: 115 KRELQELVQDVDLNY---------IAKVTNGFSGADLTEICQRACKLA-IRQSIETEIR 163
K++LQ+LV++VD N + ++ + F + + AC+LA R+S E++
Sbjct: 8 KKKLQDLVREVDPNEQLDEDVEEMLLQIADDF----IESVVTAACQLARHRKSSTLEVK 62
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 32.1 bits (74), Expect = 0.24
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 25 LFYGPPGCGKTLLAKAIAN 43
LF GP G GKT LAK +A
Sbjct: 592 LFLGPTGVGKTELAKTLAA 610
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 31.2 bits (70), Expect = 0.26
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFI 50
+ ++ G G GK+ + +AIA C FI
Sbjct: 16 RFPGSIVVMGVSGSGKSSVGEAIAEACGYPFI 47
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG,
PRK04182 class ME structural genomics, protein structure
initiative; 2.20A {Eubacterium ventriosum}
Length = 201
Score = 31.2 bits (70), Expect = 0.31
Identities = 23/158 (14%), Positives = 44/158 (27%), Gaps = 17/158 (10%)
Query: 28 GPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK 87
G G L+AK +A S + + + S+ E K
Sbjct: 13 REFGSGGHLVAKKLAEHYNIPLYSKELLDEVAKDGRYSK------------EVLERFDEK 60
Query: 88 SSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQ 147
A I+ E + R+ + + + + V G ++
Sbjct: 61 PMNFAFIPVPAGGTTISLEQ----DIAIRQFNFIRKKANEEKESFVIVGRCAEEILSDNP 116
Query: 148 RACKLAIRQSIETEIRREREKLAGNPAASAAMETEDED 185
I +T+ +R E+ G +A + D
Sbjct: 117 NMISAFILGDKDTKTKRVMERE-GVDEKTALNMMKKMD 153
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase,
family 9, cellobiohydrolase; 2.1A {Clostridium
thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Length = 609
Score = 31.5 bits (71), Expect = 0.32
Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 14/73 (19%)
Query: 227 GFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLMFPSNPNQSQSGGPNSAPANESGTG 286
G+G NP+ S G I SGGPNS + +
Sbjct: 520 GYGERP--LQNPHDRFWTPQTSKRFPAPPPGII------------SGGPNSRFEDPTINA 565
Query: 287 GILQDEAEDDLYN 299
+ +D +
Sbjct: 566 AVKKDTPPQKCFI 578
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 30.8 bits (69), Expect = 0.35
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 25 LFYGPPGCGKTLLA 38
L G PG GKTL
Sbjct: 9 LITGTPGSGKTLKM 22
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural
genomics, center for structural genomics; 2.80A
{Escherichia coli}
Length = 145
Score = 30.2 bits (69), Expect = 0.36
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 24 VLFYGPPGCGKTLLAKAI 41
V YG PG G+ A+ +
Sbjct: 27 VWLYGAPGTGRMTGARYL 44
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding
protein, ring protein, octamer, AAA ATPase; 3.20A {Homo
sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Length = 343
Score = 31.4 bits (71), Expect = 0.36
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQA 47
K L G++ +G GKT L+ + Q
Sbjct: 113 KLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQL 148
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 30.7 bits (70), Expect = 0.37
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 17 GMQPSRGVLFYGPPGCGKTLLA 38
G+ + G PG GKT+ +
Sbjct: 19 GIPQGFFIALTGEPGTGKTIFS 40
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 30.8 bits (70), Expect = 0.37
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 17 GMQPSRGVLFYGPPGCGKTLLA 38
G+ VL G PG GKT+ +
Sbjct: 19 GIPERNVVLLSGGPGTGKTIFS 40
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 30.5 bits (68), Expect = 0.38
Identities = 4/33 (12%), Positives = 15/33 (45%)
Query: 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52
+R ++ G GK+ + + + + +++
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAF 34
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE;
1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 30.6 bits (70), Expect = 0.42
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFI 50
M ++ ++F G G GK+ LA+A+A + F+
Sbjct: 1 MSLAKNIVFIGFMGSGKSTLARALAKDLDLVFL 33
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 30.8 bits (69), Expect = 0.48
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 24 VLFYGPPGCGKTLLAKAIANE 44
+L G PG GK+ A+ +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAK 25
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
c.37.1.20
Length = 212
Score = 30.6 bits (69), Expect = 0.53
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFIS 51
++F GP GK+ + + Q IS
Sbjct: 61 LVFCGPANTGKSYFGMSFIHFIQGAVIS 88
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 30.6 bits (68), Expect = 0.55
Identities = 4/39 (10%), Positives = 10/39 (25%)
Query: 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57
++ K L + +E + + P
Sbjct: 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF 81
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain
III (ATPase domain), ATP-binding, cytoplasm, DNA
replication; HET: ADP; 3.00A {Thermotoga maritima} PDB:
2z4r_A*
Length = 440
Score = 30.7 bits (70), Expect = 0.55
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 25 LF-YGPPGCGKTLLAKAIANECQANFISVK 53
LF YG G GKT L ++I N N ++
Sbjct: 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLR 162
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.60
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 16/45 (35%)
Query: 115 KRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIE 159
K+ L++L + L Y AD A LAI+ ++E
Sbjct: 19 KQALKKLQASLKL-Y----------AD-----DSAPALAIKATME 47
Score = 28.0 bits (61), Expect = 2.4
Identities = 4/6 (66%), Positives = 5/6 (83%)
Query: 246 PNSAPA 251
+SAPA
Sbjct: 34 DDSAPA 39
Score = 28.0 bits (61), Expect = 2.4
Identities = 4/6 (66%), Positives = 5/6 (83%)
Query: 275 PNSAPA 280
+SAPA
Sbjct: 34 DDSAPA 39
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 30.2 bits (69), Expect = 0.63
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 18 MQPSRGVLFY--GPPGCGKTLLAKAIANECQANF-ISV 52
M S GV+ P GCGKT +A + + + N SV
Sbjct: 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSV 59
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 31.0 bits (70), Expect = 0.64
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 13 FLKFGMQPSRGVLFYGPPGCGKTLLAK 39
+ RG++ GPPG GKT++
Sbjct: 1259 IFYDLLNSKRGIILCGPPGSGKTMIMN 1285
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 30.2 bits (67), Expect = 0.77
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGP 55
VL G PGCGKT K I + + P
Sbjct: 164 VLVDGVPGCGKT---KEILSRVNFEEDLILVP 192
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 30.0 bits (66), Expect = 0.87
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY 83
L G PG GKT L AI E Q N I + + + +++K +++
Sbjct: 36 FLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF--KQQHPNFDELVKLYEKDVVKHVTP 93
Query: 84 AMGKSSPSALRETIVEVPNITWEDIGG 110
+ + + + + N+ E G
Sbjct: 94 YSNRMTEAIISRLSDQGYNLVIEGTGR 120
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A
{Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A*
1p73_A* 1p75_A*
Length = 334
Score = 30.1 bits (67), Expect = 0.92
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVT 77
M + G G GK+ + +A+ ++ PE + W R +F+
Sbjct: 4 MVTIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYW--------RTLFETDV 55
Query: 78 MENF 81
+
Sbjct: 56 ISGI 59
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA
binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A
{Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A*
2zuc_A* 2zud_A*
Length = 324
Score = 30.1 bits (68), Expect = 0.95
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 26 FYGPPGCGKTLLAKAIANECQ 46
F+G G GKT L ++ Q
Sbjct: 112 FFGEFGSGKTQLCHQLSVNVQ 132
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 29.4 bits (66), Expect = 1.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 24 VLFYGPPGCGKTLLAKAIA 42
+L G PG GK+ A+
Sbjct: 5 ILTIGCPGSGKSTWAREFI 23
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 30.0 bits (67), Expect = 1.1
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVT 77
S + +G G GK+++A ++ + +W +S + FD T
Sbjct: 150 LDSFFLFLHGRAGSGKSVIASQALSKSD---QLIGINYDSIVWLKDSGTAPKSTFDLFT 205
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 29.8 bits (66), Expect = 1.2
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 19 QPSRGVLFYGPPGCGKTLLAKAIANECQA 47
+ L YG G GKT +A+ + +A
Sbjct: 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 29.6 bits (67), Expect = 1.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 24 VLFYGPPGCGKTLLAKAIA 42
V+ GP G GKT L +AI+
Sbjct: 33 VIILGPNGSGKTTLLRAIS 51
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 29.4 bits (66), Expect = 1.2
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 28 GPPGCGKTLLAKAIANECQANFI 50
G GKT LAK + +
Sbjct: 28 GVTNSGKTTLAKNLQKHLPNCSV 50
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 29.5 bits (67), Expect = 1.2
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 23 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF-GESEANVRDIFDKVTMENF 81
+L GP G GKT +A+ +A A FI V+ + + + G+ ++
Sbjct: 52 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAI 111
Query: 82 RYA 84
Sbjct: 112 DAV 114
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 29.4 bits (66), Expect = 1.3
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 28 GPPGCGKTLLAKAIANECQANFISVKGP 55
G GK+ + I N + +
Sbjct: 29 GGTASGKSSVCAKIVQLLGQNEVDYRQK 56
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric
ring, heptamer, ring, oligomer, RAD51 polymerizat motif;
HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1
c.37.1.11
Length = 349
Score = 29.6 bits (66), Expect = 1.4
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46
G++ +G G GKT LA +A Q
Sbjct: 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 156
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 28.5 bits (64), Expect = 1.4
Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 25/131 (19%)
Query: 9 HPEKFLKFGMQPSRGV-LFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWF 62
H + ++F G+ L G G GK+ L AI +K E
Sbjct: 14 HSDTVVEF----KEGINLIIGQNGSGKSSLLDAI---LVGLYWPLRIKDIKKDEFTK--V 64
Query: 63 GESEANVRDIFDKVTMENFRY----AMGKSSPSALRETIVEVPNITWEDIGGLEGVKREL 118
G + + IF+K + +Y K S + + W+ + E + +
Sbjct: 65 GARDTYIDLIFEK---DGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHV--TEPSSKAI 119
Query: 119 QELVQDVDLNY 129
++ + + Y
Sbjct: 120 SAFMEKL-IPY 129
>3owq_A LIN1025 protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG, unknown FUN; 2.61A {Listeria innocua}
PDB: 3nro_A
Length = 321
Score = 29.3 bits (66), Expect = 1.5
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 94 RETIVEVPNITWEDI------GGLEGVKRELQELVQDVDLNYIAKV-TNGF 137
R+T V+ N I GG G +++L+ V ++Y + GF
Sbjct: 113 RDTKVDYGNGDIGKINASYSNGGPSGTVSAVEKLMPGVPVDYFISINMEGF 163
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 28.8 bits (64), Expect = 1.5
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 93 LRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKL 152
LRE + E+ +D LE + ++++ + KL
Sbjct: 98 LREELDEIEQA--KDEARLESFIKRVKKMFDT----RHQLMVEQLDNETWDAAADTCRKL 151
Query: 153 AIRQSIETEIRREREKL 169
+ + + EKL
Sbjct: 152 RFLDKLRSSAEQLEEKL 168
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH
oxidoreductase-oxidoreductase inhibitor complex; HET:
FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Length = 352
Score = 29.4 bits (67), Expect = 1.5
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 34 KTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIF---DKVTMENFRYAMGKSSP 90
K ++ +A A +A I++ P G + R+ + R +
Sbjct: 138 KQMVQRAEALGFKALVITIDTP-----VLGNRRRDKRNQLNLEANILKAALRALKEEKPT 192
Query: 91 SALRETIVEVPNITWEDI 108
++ + + W D+
Sbjct: 193 QSVPVLFPK-ASFCWNDL 209
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 29.0 bits (65), Expect = 1.5
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 28 GPPGCGKTLLAKAIANECQANFISVKGP 55
G GK+ + + I N + +
Sbjct: 32 GGTASGKSTVCEKIMELLGQNEVEQRQR 59
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 29.1 bits (66), Expect = 1.5
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQAN--FIS 51
YGP GKT LA ++
Sbjct: 23 TQVYGPYASGKTTLALQTGLLSGKKVAYVD 52
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A*
3mrs_A 3n2e_A*
Length = 168
Score = 28.7 bits (65), Expect = 1.5
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 28 GPPGCGKTLLAKAIANECQANFI 50
G G GK+ LA+ + + +
Sbjct: 14 GFMGSGKSSLAQELGLALKLEVL 36
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 29.2 bits (66), Expect = 1.6
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 28 GPPGCGKTLLAKAIANECQAN--FISVKGPELLT---MWFGESEANVRDIFDKVTMENF 81
GP G GKT A+ + E A+ ++ + L F + V+ + + +
Sbjct: 301 GPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDAL 359
Score = 28.5 bits (64), Expect = 2.8
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 9/106 (8%)
Query: 28 GPPGCGKTLLAKAIANECQANFISVKGP---ELLTMWFGESEANVRDIFDKVTMENFRYA 84
G G GKT + K +A E NF + + F E + + F ++ N
Sbjct: 32 GKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE--IYNYFKEL-YSNELKI 88
Query: 85 MGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI 130
+ K E + T +I + + E+ + +++ +
Sbjct: 89 VHK---IQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNL 131
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia
chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 28.7 bits (65), Expect = 1.6
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 28 GPPGCGKTLLAKAIANECQANFI 50
G GCG T + + +A F+
Sbjct: 9 GARGCGMTTVGRELARALGYEFV 31
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition
domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus
fulgidus} SCOP: c.37.1.19
Length = 237
Score = 28.5 bits (64), Expect = 2.3
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 11 EKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN 48
E++L RG + P G GKT +A A NE
Sbjct: 103 ERWLVDK----RGCIV-LPTGSGKTHVAMAAINELSTP 135
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural
genomics, PSI-2, protein structure initiative; 1.38A
{Streptomyces coelicolor A3}
Length = 221
Score = 28.3 bits (63), Expect = 2.6
Identities = 9/52 (17%), Positives = 14/52 (26%)
Query: 171 GNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTL 222
G +A E D PV AH + + + + L
Sbjct: 130 GCAFLNAVAEYPDPAHPVHRAVLAHRQWFLDTVTELLAQVGDGDGVAAGRHL 181
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase
(oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP:
c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Length = 370
Score = 28.3 bits (64), Expect = 3.1
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 34 KTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIF---DKVTMENFRYA----MG 86
L+ +A +A ++V P G EA++++ F +T++NF M
Sbjct: 139 AQLVRRAERAGFKAIALTVDTP-----RLGRREADIKNRFVLPPFLTLKNFEGIDLGKMD 193
Query: 87 KSSPSALRETIVEV--PNITWEDI 108
K++ S L + +++W+D+
Sbjct: 194 KANDSGLSSYVAGQIDRSLSWKDV 217
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 28.6 bits (64), Expect = 3.2
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 10/45 (22%)
Query: 18 MQPSRGVLF-YGPPGCGKTLLAKAIAN---------ECQANFISV 52
++ G + +G GCGK++LA +++SV
Sbjct: 143 LKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSV 187
>3bos_A Putative DNA replication factor; P-loop containing nucleoside
triphosphate hydrolases, struct genomics; HET: MSE CDP;
1.75A {Shewanella amazonensis} PDB: 3sc3_A
Length = 242
Score = 28.0 bits (63), Expect = 3.2
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 25 LF-YGPPGCGKTLLAKAIANE 44
++ +GP G+T L A
Sbjct: 55 IYLWGPVKSGRTHLIHAACAR 75
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 27.5 bits (62), Expect = 3.4
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFI 50
+ + G G GKT + +A +
Sbjct: 2 KKNLTNIYLIGLMGAGKTSVGSQLAKLTKRILY 34
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 27.6 bits (62), Expect = 3.5
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 28 GPPGCGKTLLAKAIANECQANFI 50
G PG GK+ + + +A +
Sbjct: 9 GLPGSGKSTIGRRLAKALGVGLL 31
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 27.6 bits (62), Expect = 3.5
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 28 GPPGCGKTLLAKAIANECQANFI 50
G G GKT L KA A + FI
Sbjct: 32 GYMGAGKTTLGKAFARKLNVPFI 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 28.5 bits (63), Expect = 3.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 28 GPPGCGKTLLAKAIANECQANFISVKG 54
GP GCGK+ L +AIAN F + +
Sbjct: 468 GPNGCGKSTLMRAIANGQVDGFPTQEE 494
Score = 27.3 bits (60), Expect = 8.7
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 44
+ F S + GP G GK+ L + E
Sbjct: 692 INFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722
>2eyu_A Twitching motility protein PILT; pilus retraction motor,
C-terminal domain PILT, protein transport; 1.87A
{Aquifex aeolicus}
Length = 261
Score = 28.0 bits (63), Expect = 3.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 10 PEKFLKFGMQPSRG-VLFYGPPGCGK-TLLA 38
P+K L+ + G +L GP G GK T +A
Sbjct: 14 PDKVLELCHRK-MGLILVTGPTGSGKSTTIA 43
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold,
nucleotidyl transferase, structural genomic protein
structure initiative; HET: APK MSE; 2.40A {Mycobacterium
tuberculosis}
Length = 310
Score = 28.0 bits (63), Expect = 3.7
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 126 DLNYIAKVTNGFSGADLTEICQRACKLAIRQS 157
L + +V G S +L + + L +S
Sbjct: 223 GLQFAGRVGTGLSERELANLKEMLAPLHTDES 254
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 28.3 bits (63), Expect = 3.9
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 21 SRGVLFYGPPGCGKTLLAKAIAN 43
V YG GCGK++LA
Sbjct: 147 PGWVTIYGMAGCGKSVLAAEAVR 169
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+,
helix-turn-helix, nucleotide-binding, DNA binding, REP
initiation, DNA binding protein; HET: ADP; 2.70A
{Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB:
3r8f_A* 2hcb_A*
Length = 324
Score = 27.9 bits (63), Expect = 3.9
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 25 LF-YGPPGCGKTLLAKAIANE 44
+F YG G GKT L +A NE
Sbjct: 40 IFIYGSVGTGKTHLLQAAGNE 60
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups,
carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Length = 321
Score = 28.0 bits (62), Expect = 4.0
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 20/74 (27%)
Query: 11 EKFLKFGMQPSRGVLF-YGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANV 69
+FL ++ G GK+ ++ + LL+ W V
Sbjct: 81 YQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLK-------------ALLSRWPDHPNVEV 127
Query: 70 RDIFDKVTMENFRY 83
+T + F Y
Sbjct: 128 ------ITTDGFLY 135
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 27.6 bits (61), Expect = 4.3
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 28 GPPGCGKTLLAKAIANECQANFISVKGPELLTMW 61
G G GK+ ++ I+ + E +
Sbjct: 7 GTVGAGKSTISAEISKKLGYEIF----KEPVEEN 36
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 27.8 bits (61), Expect = 4.3
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 24 VLFYGPPGCGKTLLAKAIAN 43
V+ G GKT L++ + +
Sbjct: 141 VVIVGGSQTGKTSLSRTLCS 160
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 27.9 bits (62), Expect = 4.4
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 11 EKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIA 42
+ KF + V G G GKT ++ A A
Sbjct: 4 KDLFKFNKGKTTFVFIGGKGGVGKTTISAATA 35
>3co5_A Putative two-component system transcriptional RES regulator;
structural genomics, APC89341.1; 2.40A {Neisseria
gonorrhoeae}
Length = 143
Score = 27.2 bits (61), Expect = 4.4
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 24 VLFYGPPGCGKTLLAKAI 41
V G G +A+
Sbjct: 30 VFLTGEAGSPFETVARYF 47
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 27.4 bits (60), Expect = 4.9
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 28 GPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENF 81
G GK+ K + ++ E + W A + ++ N
Sbjct: 9 GNIAVGKSTFVKLLTKTYPEWHVA---TEPVATWQNIQAAGNQKACTAQSLGNL 59
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter
pomeroyi DSS, structural genomics, PSI-2, protein
structure initiative; HET: MES; 1.90A {Silicibacter
pomeroyi}
Length = 194
Score = 27.3 bits (61), Expect = 4.9
Identities = 7/36 (19%), Positives = 8/36 (22%)
Query: 163 RREREKLAGNPAASAAMETEDEDDPVPEITRAHFEE 198
R + G P S E D F
Sbjct: 95 NRAKITRYGCPVGSLCTELSKLDHAAQGQANGLFTL 130
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase,
hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex
aeolicus} PDB: 2eww_A* 2gsz_A*
Length = 372
Score = 27.6 bits (62), Expect = 4.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 10 PEKFLKFGMQPSRG-VLFYGPPGCGK-TLLA 38
P+K L+ + G +L GP G GK T +A
Sbjct: 125 PDKVLELCHRK-MGLILVTGPTGSGKSTTIA 154
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP;
1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB:
1fl9_A
Length = 158
Score = 27.2 bits (61), Expect = 5.0
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 11 EKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIA 42
E LK + + V G G GKT L + +
Sbjct: 23 EILLKLHTEKAIMVYLNGDLGAGKTTLTRGML 54
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate
metabolism, magnesium, metal-binding, multifunctional
enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A
1kkm_A*
Length = 205
Score = 27.3 bits (60), Expect = 5.3
Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 7/74 (9%)
Query: 22 RGVLFYGPPGCGKTLLAKAIANECQ------ANFISVKGPELLTMWFGESEANVRDIFDK 75
GVL G G GK+ A + + + + + +++ +I
Sbjct: 35 LGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGL 94
Query: 76 VTMENFRYAMGKSS 89
+ + G +
Sbjct: 95 -GIIDVMNLFGAGA 107
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 27.6 bits (61), Expect = 5.6
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 21 SRGVLFYGPPGCGKT-LLAKAIANECQANF 49
R +L G G GK+ LL +
Sbjct: 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGD 82
>3io5_A Recombination and repair protein; storage dimer, inactive
conformation, RECA like core domain, binding, DNA
damage, DNA recombination; 2.40A {Enterobacteria phage
T4}
Length = 333
Score = 27.5 bits (61), Expect = 5.7
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANF 49
GMQ ++ GP K+ + + +
Sbjct: 25 GMQSGL-LILAGPSKSFKSNFGLTMVSSYMRQY 56
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion
ATPase, ATP-binding, FIMB nucleotide-binding, transport;
HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB:
3jvu_A*
Length = 356
Score = 27.5 bits (62), Expect = 5.7
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 10 PEKFLKFGMQPSRG-VLFYGPPGCGK-TLLA 38
E F + P RG VL GP G GK T LA
Sbjct: 112 GEVFKRVSDVP-RGLVLVTGPTGSGKSTTLA 141
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 27.2 bits (61), Expect = 5.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 28 GPPGCGKTLLAKAIANE 44
G GKT LA+A+A
Sbjct: 13 GGTASGKTTLAQALART 29
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 27.1 bits (61), Expect = 5.9
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 22 RGVLFY--GPPGCGKTLLAKAIANECQANF-ISV 52
RG+L GP G GK + +A+ + + +F S+
Sbjct: 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSI 40
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 27.5 bits (60), Expect = 6.4
Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 11/153 (7%)
Query: 146 CQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDE-------DDPVPEITRAHFEE 198
C+ +C A+ + ++ + +++K A + + D PVP++ +F+
Sbjct: 161 CRGSCSRALAREVDLKDYEDQQKQLEQVIAKDLLPSRDRQHLPLIKMKPVPDLVPGNFKS 220
Query: 199 AMRFARRSVND-ADIRKYEMFAQTLQQSRG--FGTNFRFPSNPNQSQSGGPNSAPANESG 255
++ D+ + M + + G+ + +S ++ N SG
Sbjct: 221 QLQKVPPEWKALTDMPQMRMELERPGGNEITRGGSTSYGTGSETESPRNPSSAGSWN-SG 279
Query: 256 TGGILLMFPSNPNQSQSGGPNSAPANESGTGGI 288
+ G NP S +GG + SG G
Sbjct: 280 SSGPGSTGNRNPGSSGTGGTATWKPGSSGPGST 312
>3ice_A Transcription termination factor RHO; transcription, ATPase,
hexamer, helicase, RNA, RECA, OB fold ATP-binding,
hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli
k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Length = 422
Score = 27.2 bits (61), Expect = 6.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 29 PPGCGKTLLAKAIANECQAN 48
PP GKT+L + IA N
Sbjct: 182 PPKAGKTMLLQNIAQSIAYN 201
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 26.9 bits (59), Expect = 6.7
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVK 53
V+ G PG G T ++ + + ++ K
Sbjct: 6 VVVTGVPGVGSTTSSQLAMDNLRKEGVNYK 35
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA
capture mechanism, ATP-binding, hydrolase,
nucleotide-binding, RN binding; 2.35A {Thermotoga
maritima}
Length = 427
Score = 27.2 bits (61), Expect = 7.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 29 PPGCGKTLLAKAIANECQAN 48
PP GKT + K IAN N
Sbjct: 183 PPKAGKTTILKEIANGIAEN 202
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 26.8 bits (59), Expect = 7.0
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 105 WEDIGGLEGVKRELQELVQDVD---LNYIAKVTNGFSGADLTEICQRACKLAIRQSIETE 161
E + + L V +Y+A++ + ++ + KL ++ E
Sbjct: 105 LESVTACADPEAALVAFDTKVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNE 164
Query: 162 IRREREKLAG 171
+ R ++L G
Sbjct: 165 VERVEDQLLG 174
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 27.1 bits (61), Expect = 7.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 28 GPPGCGKTLLAKAIA 42
G GCGKT L + +A
Sbjct: 37 GASGCGKTTLLRCLA 51
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel
beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A
{Aspergillus aculeatus} SCOP: b.80.1.3
Length = 422
Score = 27.1 bits (60), Expect = 7.6
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 15/52 (28%)
Query: 69 VRDI-FDKVTMENFRYA---------MGKSSPSALRETIVEVPNITWEDIGG 110
V ++ + Y+ M + V++ NIT ++ G
Sbjct: 261 VSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGDG-----VQLNNITVKNWKG 307
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural
genomics, midwest center for structura genomics, protein
structure initiative; 1.85A {Streptococcus mutans}
Length = 217
Score = 26.9 bits (59), Expect = 8.0
Identities = 13/111 (11%), Positives = 33/111 (29%), Gaps = 17/111 (15%)
Query: 135 NGFSGADLTEICQRA------------CKLAIRQSIETEIRREREKLAGNPAASAAMETE 182
+ EI ++A K I ++ ++R + A + ++
Sbjct: 42 KTYFNVTTNEIAKKADVSVGTLYAYFASKEDILTAL---LKRYNDFFLT--TIFADINSQ 96
Query: 183 DEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQQSRGFGTNFR 233
D D + + + + + + EM A + Q++
Sbjct: 97 DSLDRFKKNPKEWLNVLINQLLAAEDKIFHAQIEMLAYAIPQAKALLEEHN 147
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 27.3 bits (61), Expect = 8.6
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 28 GPPGCGKTLLAKAIA 42
GP G GKT K +A
Sbjct: 389 GPNGIGKTTFVKMLA 403
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural
genom protein structure initiative; 1.80A {Pseudomonas
aeruginosa} SCOP: a.4.1.9 a.121.1.1
Length = 235
Score = 26.6 bits (58), Expect = 8.7
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 12/100 (12%)
Query: 136 GFSGADLTEICQRAC------------KLAIRQSIETEIRREREKLAGNPAASAAMETED 183
GF+ L I +A K A+ Q++ + + E
Sbjct: 24 GFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRFLGPFCASLEKELDRRQAKPEA 83
Query: 184 EDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMFAQTLQ 223
+ + ++ +AM RS ND I + Q
Sbjct: 84 QHATLEDLLHLLVSQAMAVKPRSGNDLSIFMRLLGLAFSQ 123
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 26.9 bits (59), Expect = 9.0
Identities = 3/25 (12%), Positives = 7/25 (28%)
Query: 28 GPPGCGKTLLAKAIANECQANFISV 52
G G G + + + +
Sbjct: 12 GSSGAGTSTVKHTFDQIFRREGVKA 36
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1,
structural genomics, structural genom consortium, SGC,
oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB:
2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Length = 392
Score = 26.8 bits (60), Expect = 9.4
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
Query: 34 KTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIF---DKVTMENFRYAMGKSSP 90
K L+ +A +A F++V P + G +VR+ F ++ M+NF + SP
Sbjct: 163 KKLVRQAEKMGYKAIFVTVDTP-----YLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSP 217
Query: 91 -------SALRETIVEV--PNITWEDI 108
S L + + P+I+WEDI
Sbjct: 218 EENFGDDSGLAAYVAKAIDPSISWEDI 244
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A*
3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A*
1q1b_A
Length = 381
Score = 26.7 bits (60), Expect = 9.6
Identities = 11/15 (73%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Query: 24 VLFYGPPGCGK-TLL 37
V+F GP GCGK TLL
Sbjct: 32 VVFVGPSGCGKSTLL 46
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 26.3 bits (59), Expect = 10.0
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 28 GPPGCGKTLLAKAIANECQANFI 50
G GK+ + ++ F
Sbjct: 7 GFMCSGKSTVGSLLSRSLNIPFY 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.382
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,543,122
Number of extensions: 270477
Number of successful extensions: 1054
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 261
Length of query: 299
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 206
Effective length of database: 4,105,140
Effective search space: 845658840
Effective search space used: 845658840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.6 bits)